Query 037142
Match_columns 383
No_of_seqs 261 out of 2033
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 09:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 6.8E-57 1.5E-61 394.4 33.3 359 1-365 136-495 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.1E-56 4.6E-61 364.1 25.8 356 1-360 141-500 (526)
3 KOG0166 Karyopherin (importin) 100.0 8.9E-45 1.9E-49 318.3 24.2 338 8-362 100-442 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 5.7E-45 1.2E-49 297.4 14.8 341 5-360 102-447 (526)
5 PLN03200 cellulose synthase-in 100.0 2.5E-36 5.4E-41 302.3 32.2 378 1-382 173-675 (2102)
6 PLN03200 cellulose synthase-in 100.0 9.1E-34 2E-38 284.1 35.4 337 5-359 392-767 (2102)
7 KOG4224 Armadillo repeat prote 100.0 8.5E-30 1.8E-34 210.5 25.3 338 1-359 152-496 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.9E-28 4.2E-33 202.5 22.3 293 4-304 195-496 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.6E-24 3.4E-29 201.7 27.8 329 5-359 319-652 (708)
10 PF05804 KAP: Kinesin-associat 99.9 5.1E-21 1.1E-25 178.4 27.1 349 1-378 275-640 (708)
11 KOG1048 Neural adherens juncti 99.8 2.3E-19 5.1E-24 163.7 21.8 340 2-359 260-687 (717)
12 PF10508 Proteasom_PSMB: Prote 99.8 4.1E-17 9E-22 150.7 27.7 334 15-358 75-422 (503)
13 KOG2122 Beta-catenin-binding p 99.8 1.4E-17 3.1E-22 159.1 16.3 341 4-358 222-603 (2195)
14 PF04826 Arm_2: Armadillo-like 99.7 1.3E-15 2.8E-20 126.5 21.0 240 98-347 9-253 (254)
15 KOG4199 Uncharacterized conser 99.7 3.6E-15 7.8E-20 123.1 22.9 285 10-299 138-442 (461)
16 KOG1222 Kinesin associated pro 99.7 4.6E-16 1E-20 134.2 17.5 326 7-359 335-666 (791)
17 PF10508 Proteasom_PSMB: Prote 99.7 1.6E-14 3.4E-19 133.7 28.6 328 19-364 40-374 (503)
18 KOG4199 Uncharacterized conser 99.7 1.8E-14 3.9E-19 119.1 25.0 318 15-354 102-442 (461)
19 KOG4500 Rho/Rac GTPase guanine 99.7 1.1E-15 2.3E-20 130.1 18.2 325 9-352 79-427 (604)
20 PRK09687 putative lyase; Provi 99.7 6.2E-15 1.4E-19 125.4 21.8 255 17-353 23-279 (280)
21 KOG2122 Beta-catenin-binding p 99.7 2.5E-15 5.4E-20 144.1 17.8 267 36-304 317-604 (2195)
22 KOG1048 Neural adherens juncti 99.7 4.4E-14 9.6E-19 129.6 22.6 303 17-338 233-617 (717)
23 KOG4500 Rho/Rac GTPase guanine 99.6 3E-14 6.5E-19 121.5 19.2 330 1-349 113-468 (604)
24 PF04826 Arm_2: Armadillo-like 99.6 2.8E-14 6.1E-19 118.5 17.5 227 13-248 8-252 (254)
25 PRK09687 putative lyase; Provi 99.6 6.3E-14 1.4E-18 119.2 17.6 225 17-298 54-279 (280)
26 KOG1293 Proteins containing ar 99.6 3.9E-13 8.5E-18 120.6 21.6 342 1-359 35-536 (678)
27 cd00256 VATPase_H VATPase_H, r 99.6 4.4E-12 9.6E-17 112.3 27.6 322 17-355 53-424 (429)
28 KOG2023 Nuclear transport rece 99.6 4.8E-14 1E-18 126.2 14.3 317 17-361 128-510 (885)
29 PRK13800 putative oxidoreducta 99.6 5E-13 1.1E-17 132.5 22.7 274 15-381 619-893 (897)
30 KOG0168 Putative ubiquitin fus 99.6 3.7E-13 8E-18 123.6 19.6 307 16-338 210-654 (1051)
31 KOG2171 Karyopherin (importin) 99.6 2.2E-12 4.7E-17 122.9 25.2 322 17-359 118-507 (1075)
32 cd00020 ARM Armadillo/beta-cat 99.5 1.9E-13 4.2E-18 102.3 11.6 118 140-258 3-120 (120)
33 cd00020 ARM Armadillo/beta-cat 99.5 6.7E-13 1.4E-17 99.3 13.6 117 182-300 3-119 (120)
34 KOG2171 Karyopherin (importin) 99.5 2.4E-11 5.2E-16 116.0 25.7 303 18-340 160-529 (1075)
35 PF01602 Adaptin_N: Adaptin N 99.5 1.4E-11 3E-16 116.8 22.9 295 17-359 42-336 (526)
36 PRK13800 putative oxidoreducta 99.4 4.1E-11 8.9E-16 119.0 25.1 246 16-353 651-896 (897)
37 KOG1293 Proteins containing ar 99.4 7.2E-12 1.6E-16 112.6 17.4 299 3-304 167-536 (678)
38 PF01602 Adaptin_N: Adaptin N 99.4 1.1E-10 2.3E-15 110.8 22.4 255 18-303 80-335 (526)
39 PTZ00429 beta-adaptin; Provisi 99.4 7.3E-10 1.6E-14 105.8 27.7 259 19-303 70-328 (746)
40 KOG1222 Kinesin associated pro 99.3 2E-09 4.4E-14 93.8 24.9 304 7-338 294-601 (791)
41 cd00256 VATPase_H VATPase_H, r 99.3 4.8E-10 1E-14 99.5 20.4 293 6-301 85-425 (429)
42 KOG2160 Armadillo/beta-catenin 99.3 2.2E-10 4.8E-15 96.9 16.8 190 112-304 94-285 (342)
43 KOG2023 Nuclear transport rece 99.3 9.3E-11 2E-15 105.6 14.5 269 18-304 175-508 (885)
44 KOG2759 Vacuolar H+-ATPase V1 99.3 8.8E-09 1.9E-13 88.6 25.2 323 17-356 65-438 (442)
45 PF03224 V-ATPase_H_N: V-ATPas 99.3 9.1E-11 2E-15 102.6 13.3 237 9-249 44-305 (312)
46 KOG2160 Armadillo/beta-catenin 99.2 5.8E-10 1.3E-14 94.4 15.3 168 6-174 113-283 (342)
47 KOG0168 Putative ubiquitin fus 99.2 6.3E-10 1.4E-14 102.9 16.3 272 7-282 244-653 (1051)
48 KOG2759 Vacuolar H+-ATPase V1 99.2 9.6E-10 2.1E-14 94.3 15.1 240 18-259 115-439 (442)
49 COG5369 Uncharacterized conser 99.2 3E-10 6.6E-15 100.0 11.5 306 36-354 408-739 (743)
50 KOG0946 ER-Golgi vesicle-tethe 99.2 4.1E-08 8.9E-13 90.6 24.7 333 18-360 23-403 (970)
51 PTZ00429 beta-adaptin; Provisi 99.2 3.4E-08 7.5E-13 94.6 25.5 219 18-257 106-325 (746)
52 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.1E-08 2.4E-13 89.5 18.5 221 112-350 68-308 (312)
53 KOG0946 ER-Golgi vesicle-tethe 99.0 2.4E-07 5.1E-12 85.7 24.9 297 7-307 52-405 (970)
54 KOG1241 Karyopherin (importin) 99.0 5.2E-08 1.1E-12 89.7 20.1 281 18-306 173-482 (859)
55 KOG1062 Vesicle coat complex A 99.0 7.6E-08 1.6E-12 89.1 20.7 277 23-327 113-435 (866)
56 KOG1059 Vesicle coat complex A 99.0 1.8E-07 3.9E-12 85.6 21.1 223 98-359 141-368 (877)
57 KOG1241 Karyopherin (importin) 98.9 7.7E-08 1.7E-12 88.5 17.2 285 14-306 357-673 (859)
58 KOG3678 SARM protein (with ste 98.9 1.9E-07 4.1E-12 81.6 17.7 274 9-298 172-449 (832)
59 KOG2973 Uncharacterized conser 98.9 1.9E-06 4E-11 71.5 22.1 274 62-359 6-318 (353)
60 KOG3678 SARM protein (with ste 98.9 2.2E-07 4.7E-12 81.2 17.1 246 98-360 177-455 (832)
61 KOG1062 Vesicle coat complex A 98.9 5E-07 1.1E-11 83.9 19.8 217 70-301 117-379 (866)
62 KOG0213 Splicing factor 3b, su 98.8 5.2E-07 1.1E-11 83.1 19.1 243 97-356 795-1065(1172)
63 KOG1242 Protein containing ada 98.8 1.8E-06 3.9E-11 78.4 21.2 316 18-359 97-447 (569)
64 KOG1059 Vesicle coat complex A 98.8 1.3E-06 2.8E-11 80.3 19.3 219 61-303 146-367 (877)
65 KOG1061 Vesicle coat complex A 98.7 6.7E-07 1.5E-11 82.9 16.1 263 18-305 50-312 (734)
66 KOG0213 Splicing factor 3b, su 98.7 1E-06 2.2E-11 81.3 16.7 263 18-302 800-1066(1172)
67 KOG1242 Protein containing ada 98.7 1.2E-05 2.5E-10 73.3 23.1 277 18-306 135-449 (569)
68 COG5181 HSH155 U2 snRNP splice 98.7 1.1E-06 2.4E-11 79.3 15.8 265 18-305 605-874 (975)
69 PF00514 Arm: Armadillo/beta-c 98.7 5.4E-08 1.2E-12 56.7 4.9 41 6-46 1-41 (41)
70 COG5181 HSH155 U2 snRNP splice 98.7 6.9E-06 1.5E-10 74.4 20.1 240 100-356 603-870 (975)
71 PF14664 RICTOR_N: Rapamycin-i 98.6 2.9E-05 6.4E-10 69.0 23.4 331 5-355 13-363 (371)
72 KOG1517 Guanine nucleotide bin 98.6 8.4E-07 1.8E-11 84.6 13.6 218 15-234 510-750 (1387)
73 KOG0212 Uncharacterized conser 98.6 2.4E-06 5.3E-11 76.4 15.6 318 16-360 83-410 (675)
74 KOG4413 26S proteasome regulat 98.6 0.00011 2.4E-09 61.9 24.1 328 18-354 83-437 (524)
75 COG5215 KAP95 Karyopherin (imp 98.6 6.9E-06 1.5E-10 73.8 17.7 275 21-302 137-438 (858)
76 KOG1517 Guanine nucleotide bin 98.5 5.8E-06 1.3E-10 79.1 16.7 223 34-259 487-733 (1387)
77 COG1413 FOG: HEAT repeat [Ener 98.5 2.9E-05 6.2E-10 69.2 20.7 209 17-292 43-264 (335)
78 KOG1824 TATA-binding protein-i 98.5 3.5E-06 7.6E-11 79.8 15.0 273 21-307 9-292 (1233)
79 KOG4646 Uncharacterized conser 98.5 7.3E-07 1.6E-11 64.5 7.8 129 59-189 16-144 (173)
80 COG5215 KAP95 Karyopherin (imp 98.5 3.3E-05 7.2E-10 69.6 19.3 273 20-306 180-484 (858)
81 KOG2734 Uncharacterized conser 98.5 0.00034 7.3E-09 61.3 24.8 263 3-304 111-403 (536)
82 TIGR02270 conserved hypothetic 98.5 4E-05 8.7E-10 68.9 20.1 221 17-302 54-297 (410)
83 KOG4646 Uncharacterized conser 98.5 3.7E-06 8.1E-11 60.9 10.4 154 186-355 16-169 (173)
84 TIGR02270 conserved hypothetic 98.4 7.1E-05 1.5E-09 67.4 20.8 152 60-257 55-206 (410)
85 KOG2973 Uncharacterized conser 98.4 7.4E-05 1.6E-09 62.3 19.1 269 20-301 6-315 (353)
86 KOG1824 TATA-binding protein-i 98.4 4.3E-05 9.4E-10 72.7 18.7 268 63-356 9-286 (1233)
87 KOG0212 Uncharacterized conser 98.4 0.00011 2.4E-09 66.2 20.1 271 18-302 168-445 (675)
88 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2.8E-05 6.1E-10 65.0 15.4 267 75-357 123-429 (432)
89 PF00514 Arm: Armadillo/beta-c 98.4 8.3E-07 1.8E-11 51.6 4.7 41 218-258 1-41 (41)
90 PF05536 Neurochondrin: Neuroc 98.4 4.8E-05 1E-09 71.3 18.7 236 18-258 6-261 (543)
91 KOG1240 Protein kinase contain 98.4 2.6E-05 5.6E-10 76.0 16.9 295 19-356 424-725 (1431)
92 KOG1789 Endocytosis protein RM 98.4 0.00035 7.5E-09 67.7 23.7 292 3-300 1799-2165(2235)
93 KOG1077 Vesicle coat complex A 98.3 9.6E-05 2.1E-09 68.3 19.1 278 63-380 115-426 (938)
94 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00014 3.1E-09 64.7 19.8 239 100-360 24-273 (371)
95 PF12348 CLASP_N: CLASP N term 98.3 3.9E-06 8.5E-11 70.2 9.7 191 27-225 17-215 (228)
96 KOG0211 Protein phosphatase 2A 98.3 6.3E-05 1.4E-09 72.1 18.0 302 19-351 357-659 (759)
97 KOG4413 26S proteasome regulat 98.3 0.00022 4.8E-09 60.1 18.4 263 79-356 62-333 (524)
98 KOG1789 Endocytosis protein RM 98.3 0.00012 2.6E-09 70.7 18.4 303 17-338 1771-2141(2235)
99 COG5369 Uncharacterized conser 98.3 3.2E-06 6.9E-11 75.3 7.6 146 159-305 404-549 (743)
100 KOG1061 Vesicle coat complex A 98.2 3.1E-05 6.7E-10 72.3 13.9 182 17-215 86-267 (734)
101 KOG2259 Uncharacterized conser 98.2 1.1E-05 2.4E-10 73.6 10.6 219 64-302 203-440 (823)
102 KOG1077 Vesicle coat complex A 98.2 0.00028 6E-09 65.4 19.4 260 24-304 118-401 (938)
103 KOG2259 Uncharacterized conser 98.2 1.9E-05 4E-10 72.3 11.3 246 22-292 203-466 (823)
104 KOG1240 Protein kinase contain 98.2 2.6E-05 5.7E-10 75.9 12.5 233 17-259 462-726 (1431)
105 COG5240 SEC21 Vesicle coat com 98.2 0.00041 8.8E-09 62.9 18.5 286 27-360 274-559 (898)
106 COG5231 VMA13 Vacuolar H+-ATPa 98.1 4.4E-05 9.6E-10 63.9 11.6 230 27-258 159-428 (432)
107 KOG1058 Vesicle coat complex C 98.1 0.00019 4.2E-09 66.8 16.6 93 243-359 373-466 (948)
108 COG1413 FOG: HEAT repeat [Ener 98.1 0.00086 1.9E-08 59.7 20.8 219 17-301 74-304 (335)
109 KOG1060 Vesicle coat complex A 98.1 0.00057 1.2E-08 64.2 19.4 275 61-372 37-336 (968)
110 PF13646 HEAT_2: HEAT repeats; 98.1 9.3E-06 2E-10 56.6 6.0 87 61-169 1-88 (88)
111 PF13646 HEAT_2: HEAT repeats; 98.1 1.1E-05 2.4E-10 56.2 6.4 87 103-212 1-88 (88)
112 COG5096 Vesicle coat complex, 98.1 0.00055 1.2E-08 65.3 19.1 138 21-174 59-196 (757)
113 smart00185 ARM Armadillo/beta- 98.1 1.1E-05 2.4E-10 46.9 5.3 39 7-45 2-40 (41)
114 PF12348 CLASP_N: CLASP N term 98.1 4.7E-05 1E-09 63.7 11.0 182 69-259 16-207 (228)
115 KOG0567 HEAT repeat-containing 98.1 0.0011 2.4E-08 54.3 18.0 255 19-354 5-278 (289)
116 KOG1943 Beta-tubulin folding c 98.1 0.00076 1.6E-08 65.6 19.8 260 17-300 341-610 (1133)
117 KOG1060 Vesicle coat complex A 98.0 0.004 8.8E-08 58.8 23.3 314 1-359 79-461 (968)
118 KOG0211 Protein phosphatase 2A 98.0 0.00024 5.2E-09 68.2 15.8 316 11-360 270-629 (759)
119 PF05536 Neurochondrin: Neuroc 98.0 0.0024 5.2E-08 60.1 21.0 237 61-304 7-264 (543)
120 PF13513 HEAT_EZ: HEAT-like re 98.0 1.3E-05 2.8E-10 50.1 4.3 55 201-256 1-55 (55)
121 PF08569 Mo25: Mo25-like; Int 97.9 0.00057 1.2E-08 59.8 14.7 227 52-284 69-313 (335)
122 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.00013 2.8E-09 51.2 8.2 95 203-301 2-96 (97)
123 PF11841 DUF3361: Domain of un 97.9 0.00083 1.8E-08 51.2 13.1 131 138-269 5-142 (160)
124 PF13513 HEAT_EZ: HEAT-like re 97.8 7.3E-05 1.6E-09 46.7 6.1 55 115-171 1-55 (55)
125 KOG1991 Nuclear transport rece 97.8 0.0054 1.2E-07 59.4 20.3 280 17-305 410-715 (1010)
126 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00013 2.9E-09 51.2 7.2 87 77-165 3-89 (97)
127 PF10165 Ric8: Guanine nucleot 97.7 0.0072 1.6E-07 55.7 19.8 255 4-259 9-338 (446)
128 KOG1248 Uncharacterized conser 97.7 0.01 2.2E-07 58.8 21.2 226 70-304 664-901 (1176)
129 KOG2062 26S proteasome regulat 97.7 0.0021 4.6E-08 60.1 15.3 163 101-289 519-682 (929)
130 PF12460 MMS19_C: RNAPII trans 97.7 0.032 6.9E-07 51.2 23.3 313 19-358 1-396 (415)
131 COG5240 SEC21 Vesicle coat com 97.7 0.0033 7.2E-08 57.2 15.5 194 62-283 267-461 (898)
132 KOG0915 Uncharacterized conser 97.6 0.0016 3.4E-08 65.6 14.5 188 100-295 997-1196(1702)
133 COG5096 Vesicle coat complex, 97.6 0.0045 9.7E-08 59.3 16.8 168 153-357 28-196 (757)
134 smart00185 ARM Armadillo/beta- 97.6 0.00018 3.9E-09 41.7 5.1 38 220-257 3-40 (41)
135 KOG1967 DNA repair/transcripti 97.6 0.00092 2E-08 63.9 12.1 187 20-213 818-1021(1030)
136 PF12717 Cnd1: non-SMC mitotic 97.6 0.0053 1.2E-07 49.0 14.6 93 30-131 1-93 (178)
137 KOG1058 Vesicle coat complex C 97.6 0.0033 7.2E-08 59.0 14.5 220 19-260 245-465 (948)
138 KOG2734 Uncharacterized conser 97.6 0.012 2.5E-07 52.1 17.0 182 119-304 102-309 (536)
139 PF12717 Cnd1: non-SMC mitotic 97.5 0.013 2.8E-07 46.7 16.1 93 114-217 1-93 (178)
140 KOG1078 Vesicle coat complex C 97.5 0.015 3.3E-07 55.0 18.2 285 21-357 249-533 (865)
141 PF11841 DUF3361: Domain of un 97.5 0.0041 8.9E-08 47.5 12.1 125 51-176 3-134 (160)
142 KOG1248 Uncharacterized conser 97.5 0.0073 1.6E-07 59.7 16.3 240 27-270 664-910 (1176)
143 PF09759 Atx10homo_assoc: Spin 97.4 0.0014 3E-08 46.0 8.4 67 203-270 2-70 (102)
144 KOG0915 Uncharacterized conser 97.4 0.0075 1.6E-07 61.1 16.0 326 16-360 955-1310(1702)
145 PF04078 Rcd1: Cell differenti 97.4 0.0067 1.4E-07 50.2 13.3 164 205-374 68-241 (262)
146 PF08569 Mo25: Mo25-like; Int 97.4 0.01 2.2E-07 52.1 15.0 210 138-360 70-287 (335)
147 KOG4653 Uncharacterized conser 97.4 0.0031 6.7E-08 60.1 12.4 222 23-256 733-962 (982)
148 KOG2274 Predicted importin 9 [ 97.4 0.021 4.4E-07 55.1 17.8 250 17-270 530-792 (1005)
149 KOG2956 CLIP-associating prote 97.4 0.015 3.2E-07 51.9 15.8 178 71-259 298-478 (516)
150 KOG2274 Predicted importin 9 [ 97.4 0.009 1.9E-07 57.4 15.4 221 29-256 503-732 (1005)
151 KOG0414 Chromosome condensatio 97.4 0.0032 6.9E-08 62.0 12.8 160 18-198 920-1083(1251)
152 KOG3036 Protein involved in ce 97.4 0.014 3.1E-07 47.5 14.3 158 204-372 96-268 (293)
153 PF10165 Ric8: Guanine nucleot 97.4 0.041 8.9E-07 50.8 19.5 258 81-357 2-338 (446)
154 KOG4151 Myosin assembly protei 97.3 0.015 3.2E-07 55.3 16.0 203 92-303 495-701 (748)
155 PF05918 API5: Apoptosis inhib 97.3 0.024 5.1E-07 52.8 17.0 246 29-304 34-300 (556)
156 KOG4535 HEAT and armadillo rep 97.3 0.0025 5.5E-08 56.7 10.0 274 20-299 298-601 (728)
157 KOG2025 Chromosome condensatio 97.3 0.058 1.2E-06 50.8 19.0 130 75-213 61-190 (892)
158 PF09759 Atx10homo_assoc: Spin 97.3 0.00098 2.1E-08 46.8 6.1 58 1-58 12-71 (102)
159 PF05004 IFRD: Interferon-rela 97.3 0.084 1.8E-06 46.1 19.4 198 103-305 45-261 (309)
160 PF12460 MMS19_C: RNAPII trans 97.2 0.029 6.2E-07 51.5 16.9 189 61-260 191-396 (415)
161 KOG1991 Nuclear transport rece 97.2 0.041 8.9E-07 53.7 17.9 313 21-353 466-797 (1010)
162 PF12719 Cnd3: Nuclear condens 97.2 0.11 2.3E-06 45.4 19.6 171 100-284 25-209 (298)
163 COG5116 RPN2 26S proteasome re 97.2 0.0048 1E-07 56.2 11.1 158 104-287 519-677 (926)
164 KOG4151 Myosin assembly protei 97.2 0.0019 4E-08 61.1 9.0 226 6-239 493-722 (748)
165 COG5656 SXM1 Importin, protein 97.2 0.17 3.6E-06 48.2 21.0 282 16-306 407-716 (970)
166 PF05004 IFRD: Interferon-rela 97.2 0.019 4.2E-07 50.0 14.6 194 62-258 46-257 (309)
167 PF11698 V-ATPase_H_C: V-ATPas 97.2 0.00086 1.9E-08 48.4 5.0 73 186-258 43-115 (119)
168 KOG3036 Protein involved in ce 97.2 0.036 7.7E-07 45.2 14.3 127 3-131 107-248 (293)
169 KOG2032 Uncharacterized conser 97.1 0.082 1.8E-06 47.7 17.5 265 17-301 254-531 (533)
170 KOG1566 Conserved protein Mo25 97.1 0.047 1E-06 46.3 15.1 206 50-260 70-288 (342)
171 KOG0567 HEAT repeat-containing 97.1 0.063 1.4E-06 44.4 15.3 196 14-257 64-279 (289)
172 PF06025 DUF913: Domain of Unk 97.1 0.21 4.5E-06 45.0 22.4 161 36-198 3-208 (379)
173 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.0025 5.4E-08 46.1 6.4 70 273-355 44-114 (119)
174 KOG4653 Uncharacterized conser 97.1 0.023 5E-07 54.5 14.2 219 70-300 737-963 (982)
175 KOG1243 Protein kinase [Genera 97.0 0.034 7.3E-07 52.3 15.0 194 98-306 327-520 (690)
176 PF07814 WAPL: Wings apart-lik 97.0 0.094 2E-06 47.0 17.6 276 19-305 23-359 (361)
177 KOG2032 Uncharacterized conser 97.0 0.12 2.7E-06 46.6 17.7 171 80-257 237-414 (533)
178 KOG0414 Chromosome condensatio 97.0 0.0087 1.9E-07 59.1 11.4 140 200-368 936-1078(1251)
179 KOG1020 Sister chromatid cohes 96.9 0.61 1.3E-05 48.2 25.0 107 17-131 816-922 (1692)
180 KOG1943 Beta-tubulin folding c 96.9 0.29 6.4E-06 48.5 20.8 156 97-259 337-501 (1133)
181 KOG2611 Neurochondrin/leucine- 96.9 0.3 6.5E-06 44.1 19.0 234 21-259 15-275 (698)
182 KOG2062 26S proteasome regulat 96.9 0.19 4.2E-06 47.7 18.2 177 145-359 520-698 (929)
183 PF05918 API5: Apoptosis inhib 96.9 0.061 1.3E-06 50.2 15.2 123 72-213 34-159 (556)
184 KOG4535 HEAT and armadillo rep 96.8 0.00079 1.7E-08 59.8 2.8 184 72-259 403-604 (728)
185 PF12719 Cnd3: Nuclear condens 96.8 0.036 7.7E-07 48.4 12.9 170 17-198 26-209 (298)
186 PF02985 HEAT: HEAT repeat; I 96.8 0.0017 3.7E-08 34.8 2.8 29 18-46 1-29 (31)
187 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.56 1.2E-05 46.3 21.3 184 10-197 110-330 (802)
188 PF04078 Rcd1: Cell differenti 96.7 0.039 8.5E-07 45.8 11.7 183 73-259 8-219 (262)
189 PF08045 CDC14: Cell division 96.7 0.056 1.2E-06 45.2 12.7 105 246-364 108-215 (257)
190 PF14500 MMS19_N: Dos2-interac 96.7 0.31 6.6E-06 41.5 19.1 224 20-261 2-240 (262)
191 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.39 8.5E-06 47.3 19.9 239 100-359 116-409 (802)
192 KOG1967 DNA repair/transcripti 96.7 0.0089 1.9E-07 57.6 8.5 151 16-168 866-1019(1030)
193 KOG3665 ZYG-1-like serine/thre 96.7 0.12 2.7E-06 50.3 16.4 175 167-354 494-695 (699)
194 KOG2956 CLIP-associating prote 96.6 0.081 1.8E-06 47.4 13.5 176 30-216 300-477 (516)
195 KOG2025 Chromosome condensatio 96.6 0.68 1.5E-05 44.1 21.2 103 59-168 85-188 (892)
196 PF11701 UNC45-central: Myosin 96.6 0.012 2.5E-07 45.8 7.3 144 147-298 6-156 (157)
197 PF11701 UNC45-central: Myosin 96.6 0.019 4E-07 44.7 8.4 147 187-353 4-156 (157)
198 COG5098 Chromosome condensatio 96.5 0.13 2.8E-06 48.5 14.6 156 19-194 894-1053(1128)
199 KOG1820 Microtubule-associated 96.5 0.081 1.8E-06 51.9 13.9 190 17-216 253-443 (815)
200 PF02985 HEAT: HEAT repeat; I 96.3 0.0075 1.6E-07 32.2 3.6 30 102-131 1-30 (31)
201 PF14668 RICTOR_V: Rapamycin-i 96.3 0.042 9.2E-07 36.0 7.6 66 204-272 4-70 (73)
202 KOG1078 Vesicle coat complex C 96.3 1.1 2.4E-05 43.1 22.2 72 100-177 244-315 (865)
203 KOG1020 Sister chromatid cohes 96.3 0.091 2E-06 53.7 12.9 166 119-304 795-963 (1692)
204 KOG2999 Regulator of Rac1, req 96.2 1 2.2E-05 41.6 19.0 166 102-270 84-254 (713)
205 KOG1243 Protein kinase [Genera 96.2 0.076 1.7E-06 50.0 11.2 194 141-361 327-520 (690)
206 PF11707 Npa1: Ribosome 60S bi 96.1 0.9 1.9E-05 40.3 21.7 163 188-360 58-241 (330)
207 KOG3665 ZYG-1-like serine/thre 96.1 0.29 6.2E-06 47.9 15.2 196 40-255 494-694 (699)
208 PF08045 CDC14: Cell division 96.0 0.063 1.4E-06 44.9 9.1 86 6-91 122-209 (257)
209 COG5116 RPN2 26S proteasome re 96.0 0.037 8E-07 50.7 8.1 126 16-158 550-676 (926)
210 KOG1820 Microtubule-associated 96.0 0.18 3.9E-06 49.6 13.3 192 100-302 252-444 (815)
211 PF11864 DUF3384: Domain of un 95.9 0.81 1.7E-05 42.8 17.0 252 29-300 41-329 (464)
212 PF06025 DUF913: Domain of Unk 95.7 1.1 2.5E-05 40.3 16.4 144 161-306 77-237 (379)
213 KOG2999 Regulator of Rac1, req 95.6 0.52 1.1E-05 43.4 13.4 156 19-176 85-245 (713)
214 PF01603 B56: Protein phosphat 95.5 0.43 9.3E-06 43.7 13.3 238 13-265 129-376 (409)
215 PF08506 Cse1: Cse1; InterPro 95.4 0.65 1.4E-05 41.7 13.9 158 126-296 195-370 (370)
216 COG5218 YCG1 Chromosome conden 95.4 2.2 4.9E-05 39.9 17.0 131 74-211 61-194 (885)
217 PLN03076 ARF guanine nucleotid 95.4 1.9 4.1E-05 46.7 18.8 272 28-305 1148-1493(1780)
218 KOG1566 Conserved protein Mo25 95.3 0.75 1.6E-05 39.3 12.6 202 100-306 78-291 (342)
219 PF12530 DUF3730: Protein of u 95.3 1.5 3.3E-05 36.7 16.7 203 61-286 2-217 (234)
220 COG5098 Chromosome condensatio 95.2 0.11 2.4E-06 48.9 8.3 131 200-359 909-1040(1128)
221 PF14668 RICTOR_V: Rapamycin-i 95.1 0.097 2.1E-06 34.4 5.7 57 34-91 4-60 (73)
222 KOG2137 Protein kinase [Signal 95.1 1.2 2.7E-05 42.5 14.7 133 144-285 389-521 (700)
223 PF11707 Npa1: Ribosome 60S bi 95.0 2.4 5.3E-05 37.6 16.2 157 146-302 58-238 (330)
224 PF08506 Cse1: Cse1; InterPro 94.9 2.7 5.8E-05 37.9 16.0 212 115-351 110-370 (370)
225 PF14500 MMS19_N: Dos2-interac 94.8 2.2 4.8E-05 36.3 17.8 221 64-304 4-240 (262)
226 PF11865 DUF3385: Domain of un 94.8 0.28 6E-06 38.3 8.6 145 17-172 10-156 (160)
227 KOG1848 Uncharacterized conser 94.8 1.7 3.6E-05 44.8 15.5 102 70-172 852-957 (1610)
228 PF01603 B56: Protein phosphat 94.8 0.92 2E-05 41.5 13.1 233 57-305 131-374 (409)
229 KOG2137 Protein kinase [Signal 94.7 0.78 1.7E-05 43.7 12.5 139 96-244 384-523 (700)
230 PF06371 Drf_GBD: Diaphanous G 94.7 0.05 1.1E-06 43.8 4.4 82 6-88 96-186 (187)
231 PF13251 DUF4042: Domain of un 94.6 0.37 8.1E-06 38.2 9.0 111 103-218 42-176 (182)
232 PF12530 DUF3730: Protein of u 94.6 2.3 5E-05 35.6 16.3 202 19-243 2-217 (234)
233 PF04063 DUF383: Domain of unk 94.6 0.34 7.4E-06 38.9 8.8 126 26-154 4-157 (192)
234 PF11865 DUF3385: Domain of un 94.6 0.36 7.9E-06 37.6 8.8 37 186-222 10-46 (160)
235 PF04063 DUF383: Domain of unk 94.6 0.29 6.3E-06 39.3 8.3 124 155-281 6-156 (192)
236 cd03568 VHS_STAM VHS domain fa 94.2 0.35 7.5E-06 36.9 7.7 75 230-304 38-113 (144)
237 PLN03076 ARF guanine nucleotid 94.1 2.6 5.6E-05 45.8 16.1 201 71-281 1148-1402(1780)
238 PRK14707 hypothetical protein; 93.9 12 0.00026 41.0 21.4 314 19-352 207-525 (2710)
239 KOG1949 Uncharacterized conser 93.8 1.1 2.4E-05 42.7 11.4 184 20-213 177-367 (1005)
240 cd03567 VHS_GGA VHS domain fam 93.7 0.46 1E-05 35.9 7.4 75 230-304 39-119 (139)
241 cd03568 VHS_STAM VHS domain fa 93.6 0.52 1.1E-05 35.9 7.7 78 273-362 38-116 (144)
242 COG5209 RCD1 Uncharacterized p 93.5 0.95 2.1E-05 36.7 9.1 136 204-350 117-262 (315)
243 PF10363 DUF2435: Protein of u 93.4 0.67 1.5E-05 32.2 7.4 68 62-131 6-73 (92)
244 KOG2933 Uncharacterized conser 93.4 0.64 1.4E-05 39.6 8.4 145 100-259 87-235 (334)
245 cd03569 VHS_Hrs_Vps27p VHS dom 93.2 0.67 1.5E-05 35.3 7.8 75 230-304 42-117 (142)
246 KOG2933 Uncharacterized conser 93.2 0.58 1.3E-05 39.9 7.8 145 61-216 90-234 (334)
247 cd03569 VHS_Hrs_Vps27p VHS dom 93.1 0.76 1.6E-05 35.0 7.9 77 273-361 42-119 (142)
248 PRK14707 hypothetical protein; 93.1 16 0.00036 40.1 22.2 310 23-351 337-650 (2710)
249 PF10363 DUF2435: Protein of u 93.0 0.56 1.2E-05 32.6 6.5 72 146-220 5-76 (92)
250 PF12031 DUF3518: Domain of un 93.0 1.1 2.4E-05 36.9 8.9 127 115-243 80-230 (257)
251 PF01347 Vitellogenin_N: Lipop 92.8 0.65 1.4E-05 45.3 9.2 167 101-297 395-585 (618)
252 PF12231 Rif1_N: Rap1-interact 92.8 7.4 0.00016 35.2 19.6 267 30-301 59-352 (372)
253 smart00638 LPD_N Lipoprotein N 92.6 2.9 6.3E-05 40.4 13.2 135 102-256 394-543 (574)
254 PF06371 Drf_GBD: Diaphanous G 92.6 0.38 8.2E-06 38.7 6.2 81 134-215 97-186 (187)
255 KOG1832 HIV-1 Vpr-binding prot 92.6 7.9 0.00017 38.4 15.2 323 29-359 365-776 (1516)
256 PF13251 DUF4042: Domain of un 92.6 2.5 5.3E-05 33.7 10.3 112 20-131 43-175 (182)
257 COG5209 RCD1 Uncharacterized p 92.4 1.3 2.7E-05 36.0 8.4 137 161-300 117-267 (315)
258 COG5218 YCG1 Chromosome conden 92.4 1.1 2.5E-05 41.7 9.2 104 228-350 90-193 (885)
259 KOG1993 Nuclear transport rece 92.3 12 0.00026 36.6 17.4 270 20-300 529-811 (978)
260 PF01347 Vitellogenin_N: Lipop 92.2 1.1 2.5E-05 43.6 9.9 136 102-256 432-587 (618)
261 cd03567 VHS_GGA VHS domain fam 92.0 1.3 2.8E-05 33.5 7.8 76 273-360 39-120 (139)
262 KOG2611 Neurochondrin/leucine- 91.9 8.9 0.00019 35.2 13.8 136 104-243 14-166 (698)
263 smart00638 LPD_N Lipoprotein N 91.3 6.8 0.00015 37.9 14.0 168 100-297 356-541 (574)
264 cd03572 ENTH_epsin_related ENT 91.1 4.5 9.8E-05 29.7 9.5 89 252-358 24-121 (122)
265 cd03561 VHS VHS domain family; 90.8 2.5 5.3E-05 31.8 8.3 76 273-360 38-116 (133)
266 smart00288 VHS Domain present 90.7 1.2 2.6E-05 33.5 6.5 78 273-362 38-117 (133)
267 cd03561 VHS VHS domain family; 90.3 6 0.00013 29.7 10.0 76 230-305 38-116 (133)
268 KOG1992 Nuclear export recepto 90.2 20 0.00044 35.3 20.9 128 29-171 17-153 (960)
269 smart00288 VHS Domain present 89.5 2.9 6.2E-05 31.5 7.8 73 231-303 39-113 (133)
270 PF08167 RIX1: rRNA processing 89.4 3.8 8.3E-05 32.1 8.7 110 18-131 26-144 (165)
271 COG5656 SXM1 Importin, protein 89.2 23 0.0005 34.6 17.5 121 93-218 400-530 (970)
272 PF14726 RTTN_N: Rotatin, an a 89.2 4.7 0.0001 28.3 8.0 70 270-353 28-97 (98)
273 KOG1949 Uncharacterized conser 89.1 20 0.00042 34.8 14.0 146 64-215 179-330 (1005)
274 KOG1822 Uncharacterized conser 89.0 30 0.00065 37.7 16.4 272 21-301 880-1189(2067)
275 PF06685 DUF1186: Protein of u 88.8 6.6 0.00014 33.0 10.0 131 14-148 70-201 (249)
276 PF08324 PUL: PUL domain; Int 88.7 0.99 2.2E-05 38.7 5.5 161 32-194 78-252 (268)
277 KOG1992 Nuclear export recepto 88.5 27 0.0006 34.5 15.2 159 17-177 498-672 (960)
278 PF10521 DUF2454: Protein of u 88.2 3.6 7.8E-05 35.6 8.5 93 119-215 98-202 (282)
279 PF06685 DUF1186: Protein of u 88.0 10 0.00022 32.0 10.6 72 144-227 73-153 (249)
280 PF11864 DUF3384: Domain of un 87.8 24 0.00052 33.1 22.5 146 59-216 176-330 (464)
281 KOG0413 Uncharacterized conser 87.4 2.7 5.9E-05 41.7 7.7 131 30-174 944-1074(1529)
282 KOG1993 Nuclear transport rece 87.4 32 0.00069 34.0 22.2 261 30-303 500-771 (978)
283 KOG1525 Sister chromatid cohes 87.1 44 0.00095 35.4 16.4 148 144-302 259-406 (1266)
284 PF13001 Ecm29: Proteasome sta 86.9 13 0.00029 35.2 12.1 223 112-361 248-493 (501)
285 PF12074 DUF3554: Domain of un 86.7 23 0.00049 31.6 14.8 195 59-260 22-237 (339)
286 PF12830 Nipped-B_C: Sister ch 86.7 15 0.00032 29.5 11.4 66 61-131 10-75 (187)
287 PF03378 CAS_CSE1: CAS/CSE pro 86.2 28 0.00061 32.2 13.5 277 19-304 28-327 (435)
288 PF00790 VHS: VHS domain; Int 86.0 6 0.00013 30.0 7.7 74 230-303 43-120 (140)
289 PF12830 Nipped-B_C: Sister ch 85.9 16 0.00036 29.3 12.0 107 19-131 10-123 (187)
290 PF00790 VHS: VHS domain; Int 85.9 2.4 5.3E-05 32.2 5.6 78 273-362 43-124 (140)
291 KOG2199 Signal transducing ada 85.8 3.7 8E-05 36.3 7.0 94 230-327 46-140 (462)
292 KOG1525 Sister chromatid cohes 85.4 54 0.0012 34.8 16.9 147 186-356 259-405 (1266)
293 PF10274 ParcG: Parkin co-regu 85.4 11 0.00024 30.0 8.9 81 144-226 38-119 (183)
294 KOG0413 Uncharacterized conser 84.9 4.7 0.0001 40.2 7.9 130 158-302 945-1074(1529)
295 PF09324 DUF1981: Domain of un 84.9 1.2 2.7E-05 30.4 3.2 71 56-126 14-84 (86)
296 cd03565 VHS_Tom1 VHS domain fa 84.8 11 0.00023 28.7 8.5 74 231-304 40-118 (141)
297 PF03378 CAS_CSE1: CAS/CSE pro 83.6 22 0.00048 32.9 11.5 114 62-176 29-149 (435)
298 KOG1848 Uncharacterized conser 83.0 33 0.00072 36.1 13.0 100 27-131 852-959 (1610)
299 PF08324 PUL: PUL domain; Int 82.8 7.4 0.00016 33.3 7.9 183 62-247 66-263 (268)
300 KOG0891 DNA-dependent protein 82.8 6.4 0.00014 43.9 8.8 197 59-259 565-764 (2341)
301 KOG2073 SAP family cell cycle 82.7 57 0.0012 32.9 18.7 194 100-301 189-396 (838)
302 PF09758 FPL: Uncharacterised 82.7 10 0.00022 29.0 7.4 127 217-353 14-146 (149)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 82.4 9.4 0.0002 27.7 7.2 71 273-355 38-114 (115)
304 PF10274 ParcG: Parkin co-regu 82.1 12 0.00027 29.7 8.0 75 229-304 38-112 (183)
305 PF12463 DUF3689: Protein of u 82.1 25 0.00053 30.7 10.5 126 10-136 2-178 (303)
306 KOG0301 Phospholipase A2-activ 82.0 23 0.0005 34.0 10.8 172 30-209 557-739 (745)
307 PF10521 DUF2454: Protein of u 81.9 18 0.00038 31.3 9.9 73 230-302 120-204 (282)
308 cd08050 TAF6 TATA Binding Prot 81.9 24 0.00051 31.6 10.8 139 63-214 182-338 (343)
309 cd03565 VHS_Tom1 VHS domain fa 81.8 14 0.0003 28.1 8.1 78 273-362 39-121 (141)
310 PF11229 DUF3028: Protein of u 81.7 46 0.00099 31.1 14.7 196 100-304 96-309 (589)
311 PF04499 SAPS: SIT4 phosphatas 81.7 39 0.00085 31.7 12.5 94 262-355 52-147 (475)
312 PF08167 RIX1: rRNA processing 81.5 24 0.00051 27.7 10.6 116 98-218 22-145 (165)
313 KOG4464 Signaling protein RIC- 81.3 22 0.00047 32.1 9.9 155 62-217 48-232 (532)
314 KOG2199 Signal transducing ada 79.8 5.8 0.00013 35.2 6.0 80 273-364 46-126 (462)
315 PF04499 SAPS: SIT4 phosphatas 79.6 13 0.00028 34.8 8.7 85 220-304 53-151 (475)
316 PF12463 DUF3689: Protein of u 79.5 40 0.00086 29.4 10.9 123 53-176 3-176 (303)
317 PF12031 DUF3518: Domain of un 78.9 9.5 0.00021 31.7 6.6 127 32-160 81-232 (257)
318 PF13001 Ecm29: Proteasome sta 78.8 34 0.00075 32.5 11.4 173 29-216 249-443 (501)
319 PF08767 CRM1_C: CRM1 C termin 78.2 35 0.00077 30.1 10.6 139 32-174 42-195 (319)
320 KOG0891 DNA-dependent protein 78.0 13 0.00029 41.6 9.2 200 17-219 565-766 (2341)
321 cd03572 ENTH_epsin_related ENT 77.6 26 0.00056 25.8 10.0 90 206-300 20-118 (122)
322 PF12074 DUF3554: Domain of un 77.4 43 0.00094 29.8 11.2 212 17-240 22-255 (339)
323 PF12726 SEN1_N: SEN1 N termin 77.2 14 0.00031 36.9 8.8 162 191-371 446-618 (727)
324 cd08050 TAF6 TATA Binding Prot 77.1 33 0.00072 30.7 10.2 96 60-157 211-322 (343)
325 KOG0392 SNF2 family DNA-depend 77.1 32 0.00068 35.9 10.7 233 17-260 77-327 (1549)
326 PF08389 Xpo1: Exportin 1-like 76.4 8.5 0.00018 29.2 5.7 142 116-296 3-148 (148)
327 PF04821 TIMELESS: Timeless pr 75.9 42 0.0009 28.8 10.2 76 285-360 133-212 (266)
328 PF14726 RTTN_N: Rotatin, an a 75.6 24 0.00052 24.8 7.1 65 227-293 28-92 (98)
329 PF04388 Hamartin: Hamartin pr 75.4 22 0.00048 35.0 9.3 92 20-111 69-162 (668)
330 PF12726 SEN1_N: SEN1 N termin 75.2 95 0.0021 31.2 19.3 124 145-271 442-567 (727)
331 PF09324 DUF1981: Domain of un 75.2 17 0.00037 24.8 6.2 67 14-85 14-84 (86)
332 KOG2149 Uncharacterized conser 75.1 51 0.0011 29.7 10.5 132 102-238 59-191 (393)
333 KOG2149 Uncharacterized conser 75.0 14 0.00031 33.0 7.1 133 145-281 59-191 (393)
334 PF07814 WAPL: Wings apart-lik 75.0 65 0.0014 29.1 15.3 93 102-196 22-116 (361)
335 PF11229 DUF3028: Protein of u 74.7 75 0.0016 29.8 14.4 212 59-282 97-330 (589)
336 KOG2038 CAATT-binding transcri 74.7 93 0.002 30.8 12.6 115 145-270 305-422 (988)
337 KOG0301 Phospholipase A2-activ 74.6 76 0.0016 30.8 11.9 130 17-155 589-727 (745)
338 PF08767 CRM1_C: CRM1 C termin 74.2 62 0.0014 28.6 11.8 160 75-238 42-220 (319)
339 KOG2011 Sister chromatid cohes 72.3 50 0.0011 34.0 10.8 136 154-300 297-434 (1048)
340 smart00802 UME Domain in UVSB 72.1 25 0.00053 25.3 6.6 80 186-270 11-95 (107)
341 PF14225 MOR2-PAG1_C: Cell mor 72.0 62 0.0014 27.6 14.4 165 31-216 76-254 (262)
342 PF12054 DUF3535: Domain of un 71.8 87 0.0019 29.2 12.7 108 31-145 101-211 (441)
343 PF04388 Hamartin: Hamartin pr 71.7 78 0.0017 31.3 12.0 156 101-281 4-161 (668)
344 PF12231 Rif1_N: Rap1-interact 70.0 86 0.0019 28.4 21.6 219 73-301 59-303 (372)
345 PF08216 CTNNBL: Catenin-beta- 69.9 8.2 0.00018 27.5 3.7 43 119-163 64-106 (108)
346 KOG1087 Cytosolic sorting prot 69.4 21 0.00045 33.2 7.1 74 273-358 39-114 (470)
347 PF14666 RICTOR_M: Rapamycin-i 68.5 68 0.0015 26.7 10.4 128 73-215 77-224 (226)
348 PF08064 UME: UME (NUC010) dom 67.9 34 0.00073 24.5 6.7 80 186-270 11-95 (107)
349 KOG2229 Protein required for a 67.4 1.1E+02 0.0024 28.7 18.1 102 21-130 20-129 (616)
350 KOG4464 Signaling protein RIC- 67.0 1E+02 0.0022 28.1 13.0 137 146-283 47-198 (532)
351 KOG4524 Uncharacterized conser 66.6 15 0.00032 36.9 5.8 93 100-195 802-898 (1014)
352 PF08711 Med26: TFIIS helical 65.7 22 0.00048 21.5 4.7 35 320-354 13-48 (53)
353 PF09758 FPL: Uncharacterised 65.6 41 0.00089 25.8 6.9 124 48-171 15-147 (149)
354 KOG2005 26S proteasome regulat 65.4 1.4E+02 0.0031 29.2 11.9 207 146-353 50-293 (878)
355 KOG2213 Apoptosis inhibitor 5/ 63.8 1.1E+02 0.0025 27.6 15.7 55 73-131 37-91 (460)
356 PF08713 DNA_alkylation: DNA a 63.6 56 0.0012 26.6 8.3 75 61-143 122-196 (213)
357 KOG1832 HIV-1 Vpr-binding prot 61.9 31 0.00067 34.6 6.9 94 29-131 674-774 (1516)
358 PF08216 CTNNBL: Catenin-beta- 61.1 12 0.00025 26.8 3.1 41 248-290 65-105 (108)
359 PF04064 DUF384: Domain of unk 61.1 38 0.00082 21.1 5.9 46 317-362 9-55 (58)
360 KOG1924 RhoA GTPase effector D 60.5 1.9E+02 0.004 28.9 13.3 141 202-351 207-359 (1102)
361 PF01365 RYDR_ITPR: RIH domain 60.2 38 0.00082 27.7 6.6 102 8-112 34-153 (207)
362 KOG1788 Uncharacterized conser 60.0 92 0.002 32.3 9.7 125 110-240 476-600 (2799)
363 PF12783 Sec7_N: Guanine nucle 59.7 34 0.00074 26.8 6.0 75 100-176 72-149 (168)
364 PF14663 RasGEF_N_2: Rapamycin 58.4 23 0.00049 25.8 4.4 38 18-56 9-46 (115)
365 PF01417 ENTH: ENTH domain; I 57.8 23 0.00049 26.2 4.4 98 241-357 15-122 (125)
366 KOG2676 Uncharacterized conser 56.4 12 0.00025 33.0 2.9 62 164-226 376-439 (478)
367 PF08064 UME: UME (NUC010) dom 56.3 61 0.0013 23.2 6.3 88 59-151 11-103 (107)
368 PF12054 DUF3535: Domain of un 56.1 1.8E+02 0.0038 27.2 13.1 80 115-198 101-180 (441)
369 PF08623 TIP120: TATA-binding 56.0 42 0.00091 26.4 5.7 96 113-214 39-145 (169)
370 PF11791 Aconitase_B_N: Aconit 55.8 30 0.00064 26.5 4.6 45 246-302 80-124 (154)
371 KOG0392 SNF2 family DNA-depend 53.6 51 0.0011 34.6 7.1 111 187-304 817-928 (1549)
372 PF08389 Xpo1: Exportin 1-like 53.2 39 0.00084 25.5 5.3 125 32-168 3-148 (148)
373 KOG2213 Apoptosis inhibitor 5/ 52.7 1.8E+02 0.0039 26.4 18.6 130 32-173 39-180 (460)
374 cd00197 VHS_ENTH_ANTH VHS, ENT 52.4 86 0.0019 22.6 9.7 69 230-298 38-112 (115)
375 PF03130 HEAT_PBS: PBS lyase H 52.0 12 0.00027 18.9 1.5 26 76-111 1-26 (27)
376 PF12765 Cohesin_HEAT: HEAT re 50.9 24 0.00053 20.2 2.8 27 325-351 16-42 (42)
377 KOG1087 Cytosolic sorting prot 50.7 46 0.001 31.0 6.0 69 18-86 39-109 (470)
378 KOG2229 Protein required for a 50.6 80 0.0017 29.6 7.2 112 187-303 17-131 (616)
379 KOG4524 Uncharacterized conser 50.2 67 0.0015 32.6 7.2 95 145-240 804-900 (1014)
380 PLN03205 ATR interacting prote 50.0 2E+02 0.0044 26.2 13.6 158 145-304 324-519 (652)
381 smart00567 EZ_HEAT E-Z type HE 49.7 29 0.00064 17.8 2.9 28 75-112 2-29 (30)
382 KOG2085 Serine/threonine prote 48.4 2.2E+02 0.0047 26.1 13.0 42 48-90 166-207 (457)
383 PF11791 Aconitase_B_N: Aconit 46.6 1.3E+02 0.0029 23.1 7.7 47 160-218 79-125 (154)
384 COG5537 IRR1 Cohesin [Cell div 45.9 2.9E+02 0.0063 26.8 11.6 132 73-215 288-421 (740)
385 PF12783 Sec7_N: Guanine nucle 45.1 70 0.0015 25.0 5.7 80 9-91 65-148 (168)
386 PF12397 U3snoRNP10: U3 small 44.3 1.2E+02 0.0027 22.0 9.7 67 230-303 7-76 (121)
387 PF08713 DNA_alkylation: DNA a 44.3 1.7E+02 0.0037 23.7 11.6 142 102-270 52-195 (213)
388 KOG1791 Uncharacterized conser 43.7 1.5E+02 0.0033 32.1 8.7 195 10-206 1432-1649(1758)
389 PF07539 DRIM: Down-regulated 43.2 1.5E+02 0.0032 22.6 6.8 83 16-111 16-98 (141)
390 KOG2549 Transcription initiati 43.2 3E+02 0.0066 26.3 10.5 139 64-215 212-369 (576)
391 KOG2676 Uncharacterized conser 43.1 17 0.00037 32.0 1.9 56 1-56 382-439 (478)
392 PF14631 FancD2: Fanconi anaem 42.9 2.7E+02 0.0059 30.6 10.9 139 102-249 436-574 (1426)
393 KOG2073 SAP family cell cycle 42.7 3.9E+02 0.0084 27.4 12.6 224 51-282 182-430 (838)
394 KOG0889 Histone acetyltransfer 42.6 7.1E+02 0.015 30.3 14.1 183 97-282 1122-1329(3550)
395 smart00509 TFS2N Domain in the 42.6 77 0.0017 21.0 4.6 36 319-354 34-69 (75)
396 PF07571 DUF1546: Protein of u 42.0 99 0.0022 21.4 5.3 58 72-129 18-77 (92)
397 PF14225 MOR2-PAG1_C: Cell mor 41.5 2.3E+02 0.0049 24.3 17.8 66 272-355 188-253 (262)
398 KOG2549 Transcription initiati 41.1 3.3E+02 0.0071 26.0 11.7 109 61-171 241-368 (576)
399 KOG1788 Uncharacterized conser 39.7 4.9E+02 0.011 27.6 17.4 131 18-155 467-600 (2799)
400 PF01365 RYDR_ITPR: RIH domain 39.0 1.2E+02 0.0025 24.8 6.3 95 115-216 75-169 (207)
401 cd00183 TFIIS_I N-terminal dom 39.0 95 0.0021 20.5 4.7 35 320-354 37-71 (76)
402 KOG1822 Uncharacterized conser 38.9 6.2E+02 0.014 28.6 19.4 266 32-305 799-1092(2067)
403 KOG1988 Uncharacterized conser 38.5 3.3E+02 0.0071 27.7 9.7 165 28-215 113-280 (970)
404 COG5095 TAF6 Transcription ini 38.3 2.7E+02 0.0059 24.3 8.6 142 62-215 200-358 (450)
405 PF06743 FAST_1: FAST kinase-l 38.1 1.1E+02 0.0025 19.8 5.2 65 80-146 4-68 (71)
406 PF06012 DUF908: Domain of Unk 37.1 1.1E+02 0.0025 27.1 6.3 56 285-357 1-56 (329)
407 PF15573 Imm27: Immunity prote 37.0 80 0.0017 25.9 4.6 30 62-91 49-78 (259)
408 KOG2011 Sister chromatid cohes 35.0 3.7E+02 0.0081 28.2 9.8 131 200-353 300-432 (1048)
409 PF12397 U3snoRNP10: U3 small 34.5 1.8E+02 0.0039 21.1 9.3 66 145-216 7-74 (121)
410 PF14676 FANCI_S2: FANCI solen 33.8 1E+02 0.0022 24.0 4.7 82 163-253 74-156 (158)
411 PF06012 DUF908: Domain of Unk 33.3 2.1E+02 0.0045 25.5 7.3 60 32-92 237-300 (329)
412 COG5101 CRM1 Importin beta-rel 32.2 5E+02 0.011 25.5 12.3 101 30-131 496-600 (1053)
413 PF09450 DUF2019: Domain of un 31.5 3.5 7.7E-05 29.2 -3.2 55 323-377 41-97 (106)
414 COG5101 CRM1 Importin beta-rel 31.5 1.6E+02 0.0034 28.7 6.3 113 61-176 483-602 (1053)
415 KOG2085 Serine/threonine prote 31.3 4.2E+02 0.0091 24.4 14.7 51 4-54 164-214 (457)
416 smart00802 UME Domain in UVSB 29.9 2.1E+02 0.0046 20.5 7.3 88 59-151 11-103 (107)
417 COG5537 IRR1 Cohesin [Cell div 29.8 5.4E+02 0.012 25.1 10.1 105 21-129 279-385 (740)
418 PF14631 FancD2: Fanconi anaem 29.6 7E+02 0.015 27.6 11.3 129 70-206 445-573 (1426)
419 KOG2038 CAATT-binding transcri 29.4 6.1E+02 0.013 25.6 18.0 102 18-129 305-408 (988)
420 PF03542 Tuberin: Tuberin; In 29.3 4E+02 0.0087 24.1 8.3 57 115-176 211-267 (356)
421 KOG2152 Sister chromatid cohes 29.2 6E+02 0.013 25.5 15.1 54 35-88 347-404 (865)
422 COG5234 CIN1 Beta-tubulin fold 29.1 2.5E+02 0.0054 27.8 7.2 226 19-259 248-492 (993)
423 cd06561 AlkD_like A new struct 29.0 2.1E+02 0.0045 22.9 6.2 74 147-227 108-181 (197)
424 KOG2022 Nuclear transport rece 28.9 6.6E+02 0.014 25.8 10.7 149 19-173 464-619 (982)
425 PF10257 RAI16-like: Retinoic 28.2 4.5E+02 0.0097 23.7 13.2 172 51-238 1-181 (353)
426 PF01465 GRIP: GRIP domain; I 28.2 1.3E+02 0.0029 17.6 4.4 33 21-53 11-43 (46)
427 KOG1988 Uncharacterized conser 28.1 6.7E+02 0.015 25.7 16.2 165 76-259 40-207 (970)
428 PF15573 Imm27: Immunity prote 27.1 3.6E+02 0.0079 22.3 7.0 73 19-111 48-121 (259)
429 PF14868 DUF4487: Domain of un 27.0 4.8E+02 0.01 25.3 8.8 68 64-131 484-553 (559)
430 PF07923 N1221: N1221-like pro 26.3 1.9E+02 0.0042 25.2 5.8 53 17-69 60-126 (293)
431 KOG2175 Protein predicted to b 26.2 5.5E+02 0.012 24.1 9.8 104 250-358 138-244 (458)
432 PF04869 Uso1_p115_head: Uso1 26.1 4.6E+02 0.01 23.2 13.5 144 114-258 51-231 (312)
433 KOG4231 Intracellular membrane 26.1 2.2E+02 0.0047 26.9 6.0 65 150-215 334-398 (763)
434 cd06561 AlkD_like A new struct 25.6 3.5E+02 0.0075 21.5 9.5 72 62-140 108-179 (197)
435 PF14868 DUF4487: Domain of un 24.9 4.3E+02 0.0094 25.6 8.1 76 100-176 478-555 (559)
436 TIGR03504 FimV_Cterm FimV C-te 24.5 1.5E+02 0.0032 17.2 3.2 27 327-353 17-43 (44)
437 PF04510 DUF577: Family of unk 24.4 3.6E+02 0.0078 21.4 14.4 153 188-356 5-164 (174)
438 PF04510 DUF577: Family of unk 23.7 3.7E+02 0.0081 21.3 9.6 114 186-302 42-165 (174)
439 KOG3687 Tuberin - Rap/ran-GTPa 23.1 83 0.0018 32.2 3.1 102 183-286 422-528 (1697)
440 PF07539 DRIM: Down-regulated 23.1 1.7E+02 0.0037 22.2 4.3 34 323-356 13-46 (141)
441 PF11640 TAN: Telomere-length 22.9 3.6E+02 0.0078 20.8 8.4 111 61-173 6-140 (155)
442 KOG0803 Predicted E3 ubiquitin 22.7 1E+03 0.022 26.0 14.5 189 19-216 43-263 (1312)
443 PF14666 RICTOR_M: Rapamycin-i 22.5 4.6E+02 0.01 21.9 14.3 129 200-355 77-224 (226)
444 PF03542 Tuberin: Tuberin; In 22.3 5.9E+02 0.013 23.1 11.2 144 18-175 142-305 (356)
445 PLN03205 ATR interacting prote 22.0 2.3E+02 0.005 25.8 5.3 112 187-300 324-445 (652)
446 cd03571 ENTH_epsin ENTH domain 21.9 3.4E+02 0.0073 20.1 6.0 74 273-357 38-119 (123)
447 PF04869 Uso1_p115_head: Uso1 21.7 5.7E+02 0.012 22.6 15.0 148 157-306 51-236 (312)
448 PF14663 RasGEF_N_2: Rapamycin 21.2 3.3E+02 0.0072 19.7 10.5 102 230-357 9-111 (115)
449 KOG4231 Intracellular membrane 21.0 1E+02 0.0022 28.9 3.1 66 20-87 331-397 (763)
450 cd03562 CID CID (CTD-Interacti 20.9 3.2E+02 0.007 19.5 8.0 88 72-169 17-104 (114)
451 KOG1086 Cytosolic sorting prot 20.8 5.1E+02 0.011 24.0 7.1 38 323-360 169-206 (594)
452 PF11935 DUF3453: Domain of un 20.7 5.1E+02 0.011 21.7 7.5 73 280-357 1-73 (239)
453 PF07923 N1221: N1221-like pro 20.5 2.8E+02 0.0061 24.2 5.7 54 185-239 59-126 (293)
454 PF12243 CTK3: CTD kinase subu 20.4 3.9E+02 0.0085 20.3 9.4 100 237-355 16-118 (139)
455 COG5095 TAF6 Transcription ini 20.1 6E+02 0.013 22.3 8.0 71 61-131 232-317 (450)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-57 Score=394.39 Aligned_cols=359 Identities=62% Similarity=0.917 Sum_probs=340.4
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+|+++++..+.+++.|++|.|++++.+++.+++++|+|+|+|++.+++.+|+.++..|++++|+.++..+....+.+++
T Consensus 136 nIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~ 215 (514)
T KOG0166|consen 136 NIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA 215 (514)
T ss_pred HHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999544445789999
Q ss_pred HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142 81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS 159 (383)
Q Consensus 81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 159 (383)
+|+|+|+|++. |.+....+..++|.|..++.+.|+++..+++|++.+|+.+ +++.++.+++.|++|.|+++|.++++.
T Consensus 216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-~ne~iq~vi~~gvv~~LV~lL~~~~~~ 294 (514)
T KOG0166|consen 216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-SNEKIQMVIDAGVVPRLVDLLGHSSPK 294 (514)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHccchHHHHHHHcCCCcc
Confidence 99999999998 8888889999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
++.+|+++++|++.+++...+.+++.|+++.+..++...+...++++|+|+++|+++++.+.++.+++.|++|.|+.+++
T Consensus 295 v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 295 VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 99999999999999999999999999999999999995537779999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY 319 (383)
Q Consensus 240 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 319 (383)
+.+.++|++|+|+|+|++..++++++.++++.|++++|+++|...|.++...++.++.+++..++..... ++ +.+
T Consensus 375 ~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~ 449 (514)
T KOG0166|consen 375 TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPL 449 (514)
T ss_pred ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877642 11 789
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCcc
Q 037142 320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPG 365 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 365 (383)
..+++++||+++++.|+.|++++|+++|..+++.||.+++++....
T Consensus 450 ~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~ 495 (514)
T KOG0166|consen 450 AIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQ 495 (514)
T ss_pred HHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccccccc
Confidence 9999999999999999999999999999999999999987665544
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-56 Score=364.08 Aligned_cols=356 Identities=52% Similarity=0.794 Sum_probs=336.1
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRI 79 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~ 79 (383)
|++|++..+.+.+++.|++|.|+++|.++..++++++.|+|+|++.+++.+|+.+++.|++++++.++.++. +..+.++
T Consensus 141 NiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 141 NIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred hhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999996443 5689999
Q ss_pred HHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142 80 ATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ 158 (383)
Q Consensus 80 a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 158 (383)
+.|+|+|+|+.. |.+....++..+|.|.+++.+.|+++...|+|++.+++.+ +.+.++.+.+.|+.+.|+++|.+++.
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCccc
Confidence 999999999988 7888888999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
.++.++++.++|++.+++...+.+++.|+++.+..+|+++ .+.+|+++||+++|+++++.+.++.+++.+++|.|+.+|
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999999999999 889999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142 239 QNAVFYIKKEAAWAISNATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDV 316 (383)
Q Consensus 239 ~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 316 (383)
...+..+|++|||++.|.++++ .++.++++++.|++++|+++|...+..+.+.++.++.|++..++.+...+. ...
T Consensus 379 s~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~ni 456 (526)
T COG5064 379 SSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNI 456 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCc
Confidence 9999999999999999999876 578999999999999999999999999999999999999999887654322 245
Q ss_pred cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 317 NQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 317 ~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
+.+..+++++||++.+.+++++.+..|+.+|..+++.||++++.
T Consensus 457 n~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 457 NIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred cHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 67899999999999999999999999999999999999988763
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-45 Score=318.33 Aligned_cols=338 Identities=28% Similarity=0.401 Sum_probs=306.9
Q ss_pred HHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 8 EDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 8 ~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
.....++..|++|.|+++|.. .++.++..|+|+|.|+++++++..+.+++.|.++.+++++ .+++..++++|+|+|+|
T Consensus 100 ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgN 178 (514)
T KOG0166|consen 100 PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL-SSPSADVREQAVWALGN 178 (514)
T ss_pred CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh-cCCcHHHHHHHHHHHhc
Confidence 456777888999999999985 6799999999999999999999999999999999999999 79999999999999999
Q ss_pred hcCCCCCC-ChhhhhchhHHHHHhhccCCH-HHHHHHHHHHHHhccCC-CchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142 87 LCGGKPRP-IFDQVRPCLPTLAQLVHSNDE-HVMSNACWGLSLLCDGG-KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ 163 (383)
Q Consensus 87 l~~~~~~~-~~~~~~~~i~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~ 163 (383)
++.+++.. +.....|+++.|+.++..++. ...+++.|+|.|+|+++ +++....+ ..++|.|..++.+.|+++...
T Consensus 179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~D 256 (514)
T KOG0166|consen 179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTD 256 (514)
T ss_pred cccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHH
Confidence 99999554 566669999999999997775 89999999999999994 22333333 247999999999999999999
Q ss_pred HHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCc
Q 037142 164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAV 242 (383)
Q Consensus 164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~ 242 (383)
++|++++|+.+.++.++.+++.|+++.|+.+|.+. +..++..|+++++|++.+++...+.+++.|++|.|..++. ++.
T Consensus 257 a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~ 335 (514)
T KOG0166|consen 257 ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK 335 (514)
T ss_pred HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999998 567
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142 243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL 322 (383)
Q Consensus 243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (383)
..+|++|||+|+|++.+ +.++++.+++.|++|.|+.+++..+.++++.|+|++.|++..+..+ -..+
T Consensus 336 ~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~------------qi~y 402 (514)
T KOG0166|consen 336 ESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE------------QIKY 402 (514)
T ss_pred hhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH------------HHHH
Confidence 77999999999999996 7899999999999999999999999999999999999999866644 4667
Q ss_pred HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 037142 323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGP 362 (383)
Q Consensus 323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 362 (383)
+.+.|.++.+.+++..++.++...+++.+++++..++...
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999887776444
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.7e-45 Score=297.36 Aligned_cols=341 Identities=25% Similarity=0.347 Sum_probs=308.1
Q ss_pred CChHHHHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHH
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLA-SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWT 83 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~ 83 (383)
.+......++++|++|.|++++. .+..-.+..|+|+|+|++++.....+.+++.|.+|.++++| .+++.+++++++|+
T Consensus 102 E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL-~s~~~~V~eQavWA 180 (526)
T COG5064 102 ETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLL-SSTEDDVREQAVWA 180 (526)
T ss_pred ccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHH-cCchHHHHHHHHHH
Confidence 34456778999999999999994 57888999999999999999989999999999999999999 78899999999999
Q ss_pred HHhhcCCCCC-CChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCc-hHHHHHHHhCcHHHHHHhcCCCChh
Q 037142 84 LSNLCGGKPR-PIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKN-DEIQAVIEAGVCPRLVKLLGHPSQS 159 (383)
Q Consensus 84 L~~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~~~ 159 (383)
|+|++.+++. ++.....|+++.++.++.++. ..+.+++.|+|.|+|+++++ +.-..+.. .+|.|.+++.+.|++
T Consensus 181 LGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiys~D~e 258 (526)
T COG5064 181 LGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYSRDPE 258 (526)
T ss_pred hccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhhcCHH
Confidence 9999999954 467777999999999998764 58999999999999998533 33333433 689999999999999
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
+...|+|++.+++.+..+.++.+++.|+.+.|+.+|+++ +..++..+++.++|++.+++...+.+++.|+++.+-.+|+
T Consensus 259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs 337 (526)
T COG5064 259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS 337 (526)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY 319 (383)
Q Consensus 240 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 319 (383)
++...+|++|||+|+|++.. +.++++.+++.+++|+|+.++..-+..+++.|||++.|....+.. .+..
T Consensus 338 ~~ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~----------~PD~ 406 (526)
T COG5064 338 SPKENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN----------RPDI 406 (526)
T ss_pred ChhhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC----------CchH
Confidence 99999999999999999987 579999999999999999999999999999999999999876553 3457
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
.+++.+.|++..|+++++-.+..|.+.+++.+++....++-
T Consensus 407 iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 407 IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred HHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 88899999999999999999999999999999988877763
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=302.32 Aligned_cols=378 Identities=21% Similarity=0.208 Sum_probs=307.5
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|++..++.....+++.|++|.|+++|+++++.++..|+++|.+++...++.+..+++.|+++.|+++|.++.+..+++.|
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~A 252 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA 252 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHH
Confidence 45665555667789999999999999999999999999999999988788999999999999999999555677999999
Q ss_pred HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCC---------HHHHHHHHHHHHHhccCCCchHHH------------
Q 037142 81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSND---------EHVMSNACWGLSLLCDGGKNDEIQ------------ 138 (383)
Q Consensus 81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~---------~~~~~~~~~~l~~l~~~~~~~~~~------------ 138 (383)
+|+|.||+.++ ..+......|++|.|++++..++ ..+++++.|+|.|+|.+ ....+.
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg-~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG-MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-chhhHHHHHHhhcccchH
Confidence 99999999986 34455556999999999997544 45689999999999875 111000
Q ss_pred -------------------------------------------------------------------HHHHhCcHHHHHH
Q 037142 139 -------------------------------------------------------------------AVIEAGVCPRLVK 151 (383)
Q Consensus 139 -------------------------------------------------------------------~~~~~~~i~~l~~ 151 (383)
.+.+.+.++.|+.
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~ 411 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence 0001122334444
Q ss_pred hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142 152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI 231 (383)
Q Consensus 152 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l 231 (383)
+|...+.+++..++++|++++.++++..+.+.+.|+++.|+.+|.++ ++..++.++++++|++.++++.+..+++.|++
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 55555677888999999999988888888899999999999999998 99999999999999999998999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCc
Q 037142 232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLE-REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTD 310 (383)
Q Consensus 232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 310 (383)
|.|+++|.+++.+++++|+|+|+|++.+ .++++.++ +.|++++|+++|++++++++..++++|.+++..++..+...
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~--~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCH--SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 9999999999999999999999999986 35555555 68999999999999999999999999999987554332110
Q ss_pred C-----CC------------------Cccc-HHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC------
Q 037142 311 T-----DI------------------GDVN-QYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV------ 360 (383)
Q Consensus 311 ~-----~~------------------~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~------ 360 (383)
. .. ...+ ...+.....|+++.|.+|++++++++++.|..+|.+||.....
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 0 00 0000 0111122468999999999999999999999999999986643
Q ss_pred -----CCCcccccccccccchhhhccC
Q 037142 361 -----GPQPGLLYAGNEENEEEDALGV 382 (383)
Q Consensus 361 -----~~~~~~~~~~~~~~~~~~~~~~ 382 (383)
.|+..+++++++..+.++||++
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL 675 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARAL 675 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHH
Confidence 6888999999999999999985
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=284.08 Aligned_cols=337 Identities=18% Similarity=0.191 Sum_probs=298.9
Q ss_pred CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL 84 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L 84 (383)
+++..++.+.+.|+++.|+.+|...+.++|.+++|+|.+++.++.+.++.+.+.|+++.|+++| .+++...++.++|++
T Consensus 392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L 470 (2102)
T PLN03200 392 GNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALL 470 (2102)
T ss_pred CChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 5677788888999999999999999999999999999999999899999999999999999999 577899999999999
Q ss_pred HhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH-HHHhCcHHHHHHhcCCCChhhHH
Q 037142 85 SNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA-VIEAGVCPRLVKLLGHPSQSVLT 162 (383)
Q Consensus 85 ~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~i~~l~~~L~~~~~~v~~ 162 (383)
++++..+. .+......|++|.|++++.+++..+++.++|+|.|++.+ +++++. +.+.|+++.|+++|++++++.+.
T Consensus 471 ~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~--~~qir~iV~~aGAIppLV~LL~sgd~~~q~ 548 (2102)
T PLN03200 471 AILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH--SEDIRACVESAGAVPALLWLLKNGGPKGQE 548 (2102)
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 99998663 344555699999999999999999999999999999987 445555 44779999999999999999999
Q ss_pred HHHHHHhhhhcCCCcc-------------------------------------ccceecCCChHHHHHhhccccchhHHH
Q 037142 163 QALHTVGNIARGDYSQ-------------------------------------TLYIINCGALPYLLGLLIDNHKTSIKN 205 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~-------------------------------------~~~l~~~~~i~~l~~ll~~~~~~~~~~ 205 (383)
.++++|.+++...+.. .+.....|+++.|..++.++ ++.+++
T Consensus 549 ~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk 627 (2102)
T PLN03200 549 IAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQE 627 (2102)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHH
Confidence 9999999996432211 01112458999999999999 999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC
Q 037142 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD 285 (383)
Q Consensus 206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 285 (383)
.|+|+|.|++.++++..+.++..|++++++.++++++.+++++|+|+|.|++...+..+...+++.|++++|++++++++
T Consensus 628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d 707 (2102)
T PLN03200 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS 707 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998777788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 286 PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 286 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.+++..++.+|.+++..++. ...+.+.|+++.|.+++++++++.++.|..+|..+.....
T Consensus 708 ~~v~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 708 IEVAEQAVCALANLLSDPEV--------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred hHHHHHHHHHHHHHHcCchH--------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99999999999999987653 3336688999999999999999999999999988876654
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.5e-30 Score=210.49 Aligned_cols=338 Identities=19% Similarity=0.238 Sum_probs=289.5
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+++. ++++..+...|++.++.++-++.+..+|.++..+|.|++.. .+.|+.++..|++|.|++++ ++.|..++..+
T Consensus 152 nLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll-~s~d~dvqyyc 228 (550)
T KOG4224|consen 152 NLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLL-KSGDLDVQYYC 228 (550)
T ss_pred hhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhh-ccCChhHHHHH
Confidence 56666 78899999999999999988889999999999999999964 58999999999999999999 78899999999
Q ss_pred HHHHHhhcCCCCCCChhhhhc--hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142 81 TWTLSNLCGGKPRPIFDQVRP--CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ 158 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~--~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 158 (383)
+.+++|++.+...+......+ .+|.|+.++.++++.++.++..+|.+++.. .+.+..+.+.|.+|.++++|+++..
T Consensus 229 ttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~ 306 (550)
T KOG4224|consen 229 TTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMG 306 (550)
T ss_pred HHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcch
Confidence 999999998864444444444 999999999999999999999999999987 7788889999999999999999988
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
........|++|++-+.-+. -.+.+.|++.+|+.+|...++++++..|..+|.|++..+......+++.|.+|.+..++
T Consensus 307 plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 307 PLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL 385 (550)
T ss_pred hHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH
Confidence 88889999999999765533 45889999999999999886788999999999999998888899999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccH
Q 037142 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQ 318 (383)
Q Consensus 239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 318 (383)
.++..+++.+...+++.++.+ ......+.+.|+++.|+.++.+.+.+++-++..+|.|+...-+ .
T Consensus 386 lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-------------~ 450 (550)
T KOG4224|consen 386 LDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-------------H 450 (550)
T ss_pred hcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-------------H
Confidence 999999999999999999887 4667888999999999999999999999999999999987433 3
Q ss_pred HHHHHHHh-----ccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 319 YAQLVEEA-----KGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 319 ~~~~l~~~-----~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
|.++++-- |.-..|.+++.+.+..+...+.+.+..+..+.+
T Consensus 451 YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 451 YARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 44433221 233345566666666677777777766666554
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-28 Score=202.53 Aligned_cols=293 Identities=20% Similarity=0.262 Sum_probs=260.7
Q ss_pred CCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhcCCCChhHHHHHH
Q 037142 4 SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLNNHENLSMKRIAT 81 (383)
Q Consensus 4 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~~~~~~~~~~a~ 81 (383)
+++.|+++.++..|++|.|+.+++++|+++|.++..++++++-+ ...|+.+.+.+ .++.|++++ ++++..++.+|.
T Consensus 195 Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~ 272 (550)
T KOG4224|consen 195 THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAG 272 (550)
T ss_pred hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHH
Confidence 35789999999999999999999999999999999999999975 47888888888 999999999 788999999999
Q ss_pred HHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC-Chhh
Q 037142 82 WTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP-SQSV 160 (383)
Q Consensus 82 ~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~-~~~v 160 (383)
-+|.|++.+..........|.+|.++++++++..........|+.|++.+ +-+-..+.+.|++.+|+.+|+.. +.++
T Consensus 273 lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih--plNe~lI~dagfl~pLVrlL~~~dnEei 350 (550)
T KOG4224|consen 273 LALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH--PLNEVLIADAGFLRPLVRLLRAGDNEEI 350 (550)
T ss_pred HHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc--cCcccceecccchhHHHHHHhcCCchhh
Confidence 99999999976666677799999999999988878888888999999987 55666788899999999999984 5669
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
+-.|..+|++|+...+.....+.+.|.++.+..++.+. .-.++.+.-.+++.++... ..+..+.+.|++|.|+.+..+
T Consensus 351 qchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 351 QCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred hhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCc
Confidence 99999999999988888888899999999999999998 8999999999999887654 778899999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLER------EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
.+.+++..|+.+|.|++.. .++...+++ .|+-..|..++.+.+..++..+.|.+..+++...
T Consensus 429 ~s~Ev~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 429 ESEEVRGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred cchhhcccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987 455555554 2566679999999999999999999999987543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=1.6e-24 Score=201.71 Aligned_cols=329 Identities=20% Similarity=0.186 Sum_probs=276.7
Q ss_pred CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL 84 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L 84 (383)
-..+++..+.+.|+++.|.+++.+++.+++..++++|.|++.+ ++.|..++..|++|.|+.+|. + +..+..++.+|
T Consensus 319 i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iL 394 (708)
T PF05804_consen 319 IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK-D--PNFREVALKIL 394 (708)
T ss_pred CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHH
Confidence 3578999999999999999999999999999999999999986 488999999999999999994 3 34567799999
Q ss_pred HhhcCCCCCCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142 85 SNLCGGKPRPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ 163 (383)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~ 163 (383)
.+++.+...+......+++|.+.+++.. +++.+...+++.+.|++.+ ..+.+.+++.++++.|+...-...+.+
T Consensus 395 y~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~--~rnaqlm~~g~gL~~L~~ra~~~~D~l--- 469 (708)
T PF05804_consen 395 YNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN--KRNAQLMCEGNGLQSLMKRALKTRDPL--- 469 (708)
T ss_pred HHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC--HHHHHHHHhcCcHHHHHHHHHhcccHH---
Confidence 9999988777777778999999997664 5677788889999999987 678888888888999988775543323
Q ss_pred HHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--
Q 037142 164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-- 241 (383)
Q Consensus 164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-- 241 (383)
.++.++|++.+++.....+. +++..++..+..+.+++...+++++|+|+...+.+..+.+-+.+++|.+.+.+..+
T Consensus 470 LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 470 LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 46799999988865444333 57788888888776889999999999999887656666666789999999999764
Q ss_pred chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142 242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY 319 (383)
Q Consensus 242 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 319 (383)
.+++..+++.+++.++.. +.....+.+.|+++.|++++.. +|.+++.+.++++++++.+.+..
T Consensus 548 ~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------- 612 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------- 612 (708)
T ss_pred ChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------
Confidence 568999999999999975 7888888899999999999985 47899999999999999875533
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
..++.+.+....+.++.+++|.+|++.|..+|+-..+.++
T Consensus 613 ~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 613 EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 3456788999999999999999999999998887777765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=5.1e-21 Score=178.41 Aligned_cols=349 Identities=16% Similarity=0.131 Sum_probs=274.6
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+|. +++....+.+.|+++.|+++|++++.++...++++|.+++... +++..+.+.|+++.|.+++ ++++..++..+
T Consensus 275 NLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl-~s~~~~l~~~a 351 (708)
T PF05804_consen 275 NLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLL-PSENEDLVNVA 351 (708)
T ss_pred HHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHh-cCCCHHHHHHH
Confidence 3444 6788999999999999999999999999999999999999764 7899999999999999999 78889999999
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChh
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQS 159 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~ 159 (383)
+++|.||+.+...+......|++|.|+.++.++ ..+..++.+|++++.. ++....+..++++|.+++++-. +++.
T Consensus 352 LrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d--d~~r~~f~~TdcIp~L~~~Ll~~~~~~ 427 (708)
T PF05804_consen 352 LRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD--DEARSMFAYTDCIPQLMQMLLENSEEE 427 (708)
T ss_pred HHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC--HhhHHHHhhcchHHHHHHHHHhCCCcc
Confidence 999999999987777777899999999999865 4666789999999986 5666677778899999998655 6777
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
+...++..+.|++.+.. +.+.+.+.++++.|+.......++ -.+..+.|++.+++.....+. +++..|+.++.
T Consensus 428 v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~ 500 (708)
T PF05804_consen 428 VQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVS 500 (708)
T ss_pred ccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhh
Confidence 77778888999986654 557788888899999876655232 245789999988755554443 36777777776
Q ss_pred c-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142 240 N-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDV 316 (383)
Q Consensus 240 ~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 316 (383)
. .+.+..-++..+|+|+... +....+.+-+.+++|.|.+.+..+ ++++...++-.+..++..
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-------------- 565 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-------------- 565 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--------------
Confidence 5 4788999999999999876 334455555689999999999754 457888888888877742
Q ss_pred cHHHHHHHHhccHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCCCC-----------CCCcccccccccccchhh
Q 037142 317 NQYAQLVEEAKGLEKIENLQRH--DNYEIHEKSAKILETYWCGRVV-----------GPQPGLLYAGNEENEEED 378 (383)
Q Consensus 317 ~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 378 (383)
+....++.+.|.++.|.+++.. +++++.-+....+..+...++. .-+..+.++.|.+.|..+
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~ 640 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVC 640 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHH
Confidence 2356778899999999999775 4567767777777777666542 333445555666666543
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=2.3e-19 Score=163.68 Aligned_cols=340 Identities=19% Similarity=0.184 Sum_probs=264.7
Q ss_pred ccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH--HHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR--FRDLVLGEAALIPLLTQLNNHENLSMKRI 79 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~~L~~~~~~~~~~~ 79 (383)
+|.++.+-+..+-+.|.|+.|+.+|.+...+++.+|+++|.|+..+... .+-.+.+.++++.++++|....|.++++.
T Consensus 260 lcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~ 339 (717)
T KOG1048|consen 260 LCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVREL 339 (717)
T ss_pred HHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHH
Confidence 3567788888999999999999999999999999999999999976554 88889999999999999977789999999
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc----------C----CHHHHHHHHHHHHHhccCCCchHHHHHHH-hC
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS----------N----DEHVMSNACWGLSLLCDGGKNDEIQAVIE-AG 144 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~----------~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~ 144 (383)
+..+|+||++.+ ......+...+..|..-+-. + +.++..++..||.|++.. ..+..+.+.+ .|
T Consensus 340 iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~-~~eaR~~mr~c~G 417 (717)
T KOG1048|consen 340 ITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSA-GQEAREQMRECDG 417 (717)
T ss_pred HHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccch-hHHHHHHHhhccc
Confidence 999999999984 33444556666666654431 1 367899999999999986 5566666654 58
Q ss_pred cHHHHHHhcCC------CChhhHHHHHHHHhhhhcCCCcc----------------------------------------
Q 037142 145 VCPRLVKLLGH------PSQSVLTQALHTVGNIARGDYSQ---------------------------------------- 178 (383)
Q Consensus 145 ~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~~~~~---------------------------------------- 178 (383)
++..|+..+++ .|....+++...++|+++.-...
T Consensus 418 LIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~ 497 (717)
T KOG1048|consen 418 LIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCD 497 (717)
T ss_pred hHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhccc
Confidence 89999988863 56778899999999998543300
Q ss_pred -------------ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH----HHHHHH-HhcCChHHHHHHhhc
Q 037142 179 -------------TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR----EQIQAV-IDAGLIGPLVNLLQN 240 (383)
Q Consensus 179 -------------~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~----~~~~~~-~~~~~l~~L~~ll~~ 240 (383)
...+.+..+++.-..++....++.+.+.++++|.|++++.. .....+ .+..+++.++++++.
T Consensus 498 ~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~ 577 (717)
T KOG1048|consen 498 DLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN 577 (717)
T ss_pred ccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc
Confidence 01122223444444555444378899999999999998653 344444 478899999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC------CHHHHHHHHHHHHHHHHhchhcccCcCCCC
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP------DPQIVTVCLKALENILKVGEAEKNTDTDIG 314 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 314 (383)
++..+...++.+|.|++.+ .. .+.++..++++.|++.|... +.++...++..|.+++......
T Consensus 578 ~~~~vv~s~a~~LrNls~d--~r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~n-------- 646 (717)
T KOG1048|consen 578 DDSDVVRSAAGALRNLSRD--IR-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLN-------- 646 (717)
T ss_pred CCchHHHHHHHHHhhhccC--ch-hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHH--------
Confidence 9999999999999999987 23 44445688999999999754 3588889999999999654432
Q ss_pred cccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCC
Q 037142 315 DVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 315 ~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 359 (383)
.+-+.+.+++++|.-+..+. ++++.+.|...+..++...+
T Consensus 647 -----Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 647 -----AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred -----HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 33355888999999997764 45788999999999988776
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.81 E-value=4.1e-17 Score=150.73 Aligned_cols=334 Identities=18% Similarity=0.184 Sum_probs=260.1
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
..+..+.|...|.++++.+|..+++.+++++.++......+.+.++++.++.++ .+++..+...|+.+|.+++...+..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhH
Confidence 346778889999999999999999999999988888888888899999999999 7889999999999999999876555
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
...+..+.++.|..++...+..+|..+..++.+++.. +++....+.+.|+++.++..++++|.-++..++.+|..++.
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 4455567789999999888889999999999999988 77888888889999999999999999999999999999998
Q ss_pred CCccccceecCCChHHHHHhhccccchh-----HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTS-----IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEA 249 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~-----~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 249 (383)
.++..+.+.+.|+++.+..++.+..... +....+...++++...+...... -..++..+.+++.+.++..+..|
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL-YPAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHH
Confidence 6667788899999999999997652222 22334467788877443333221 13466777788888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHH-HHc-----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHH
Q 037142 250 AWAISNATFGGTHEQIKYL-ERE-----GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLV 323 (383)
Q Consensus 250 ~~~l~~l~~~~~~~~~~~l-~~~-----~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 323 (383)
..+++.++.. .+....+ ... .++........++..+++..++.++.+++......+... -.......+
T Consensus 311 ~dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~----i~~~~~~w~ 384 (503)
T PF10508_consen 311 FDTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND----ILSITESWY 384 (503)
T ss_pred HHHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH----HHHHHHHHH
Confidence 9999999966 5666666 332 245555666667788999999999999987655322110 001111112
Q ss_pred HHh--ccHH-HHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 324 EEA--KGLE-KIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 324 ~~~--~~~~-~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
... +... .+..++.+|=++++..+..++..++...
T Consensus 385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 222 2233 6778888898999999999998887765
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=1.4e-17 Score=159.14 Aligned_cols=341 Identities=19% Similarity=0.156 Sum_probs=266.3
Q ss_pred CCChHHHHHHHhCCChHHHHHhhCC---CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHH------HH----hcC
Q 037142 4 SKTLEDKKAVVDHGAVPIFVKLLAS---PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLL------TQ----LNN 70 (383)
Q Consensus 4 ~~~~~~~~~~~~~g~i~~L~~lL~~---~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~------~~----L~~ 70 (383)
+.+++.+..+...|.++.|+++|.. .+.+.+..|-.+|.||....++....-.+..++..|= .. ++.
T Consensus 222 Sss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqa 301 (2195)
T KOG2122|consen 222 SSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQA 301 (2195)
T ss_pred ccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999975 3568899999999999976665444333333333322 11 111
Q ss_pred -------CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc---------C---CHHHHHHHHHHHHHhccC
Q 037142 71 -------HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS---------N---DEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 71 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~---------~---~~~~~~~~~~~l~~l~~~ 131 (383)
.++..-...|+.+|..++.+.+.+.....-|+++.+..|+.- + ...+|+++..+|.||+.+
T Consensus 302 r~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFG 381 (2195)
T KOG2122|consen 302 RGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFG 381 (2195)
T ss_pred cCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccc
Confidence 112233335666677777766555666668888888887761 1 267999999999999998
Q ss_pred CCchHHHHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC-CccccceecCCChHHHHHhhccccchhHHHHHHH
Q 037142 132 GKNDEIQAVI-EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD-YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACW 209 (383)
Q Consensus 132 ~~~~~~~~~~-~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~ 209 (383)
+..+...++ ..|++..++..|.+..+++......+|+||+=.- .+....+-+.|-+..|..+.-....+...+..+.
T Consensus 382 -Dv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS 460 (2195)
T KOG2122|consen 382 -DVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS 460 (2195)
T ss_pred -cccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence 655555554 4599999999999988899999999999999444 4445555667888888887655547788999999
Q ss_pred HHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcC----chhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcC
Q 037142 210 IISNITAGNREQIQAVI-DAGLIGPLVNLLQNA----VFYIKKEAAWAISNATFGG--THEQIKYLEREGCIKPLCDLLL 282 (383)
Q Consensus 210 ~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~ 282 (383)
+|+||+.++.+++..|. -.|.+..|+.+|... ...+-+.|..+|.|..... +..+.+.+.+.+++..|+..|+
T Consensus 461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence 99999998888888887 478899999999753 5567788888888876543 4577888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 283 CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 283 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
+..-.++-++|.+|+||...+..+| ++|++.|.+..|.+|+++++..|..-+...|.++...-
T Consensus 541 S~SLTiVSNaCGTLWNLSAR~p~DQ-------------q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 541 SHSLTIVSNACGTLWNLSARSPEDQ-------------QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hcceEEeecchhhhhhhhcCCHHHH-------------HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999998877765 56999999999999999999999999988888887654
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.73 E-value=1.3e-15 Score=126.50 Aligned_cols=240 Identities=18% Similarity=0.167 Sum_probs=192.7
Q ss_pred hhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 98 QVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 98 ~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
...+-++.++.+|+ +.|+.+++.++.++.+.+.. +.+...+.+.|+++.+..+|.++++.++..|+.++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 34667889999998 56899999999999999876 6778888899999999999999999999999999999987765
Q ss_pred ccccceecCCChHHHHHh-hccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 177 SQTLYIINCGALPYLLGL-LIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~l-l~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
...+ ++. .++.+.+. .+.+-+..++..++++|.|++..+ +....+ .+.++.++.++.+++..+|..+..+|.|
T Consensus 87 n~~~--Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 NQEQ--IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hHHH--HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4332 332 45555554 344347899999999999998665 333333 3479999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcccCcC-CCCcccHHHHHHHHhc-cHHHH
Q 037142 256 ATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEKNTDT-DIGDVNQYAQLVEEAK-GLEKI 332 (383)
Q Consensus 256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~L 332 (383)
++.+ +...+.++..++...++.+++.+ +.++...++..+.|+...-.+....+. +.........+|.+.+ ..++|
T Consensus 161 LS~n--p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 161 LSEN--PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL 238 (254)
T ss_pred hccC--HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence 9987 78899999999999999999876 668889999999999776554433322 2334555667777777 78899
Q ss_pred HHHhcCCCHHHHHHH
Q 037142 333 ENLQRHDNYEIHEKS 347 (383)
Q Consensus 333 ~~l~~~~~~~v~~~a 347 (383)
..+.+|++++|+.+.
T Consensus 239 ~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 239 QALANHPDPEVKEQV 253 (254)
T ss_pred HHHHcCCCHHHhhhc
Confidence 999999999998764
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=3.6e-15 Score=123.10 Aligned_cols=285 Identities=17% Similarity=0.175 Sum_probs=231.0
Q ss_pred HHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037142 10 KKAVVDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL 87 (383)
Q Consensus 10 ~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l 87 (383)
...+.+..+...++++|.. .+.++-...+.++..-+...+.+|+.+++.++++.+.+.|+......+.+.+.|++.-+
T Consensus 138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l 217 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL 217 (461)
T ss_pred CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 3456777888999999865 67788888888888888778899999999999999998886555557889999999999
Q ss_pred cCCCCCCC----------hhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-
Q 037142 88 CGGKPRPI----------FDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH- 155 (383)
Q Consensus 88 ~~~~~~~~----------~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~- 155 (383)
..++..+. .+...+++..|...++- -+|.+...++.+|..++-. ++.++.+.+.|++..++.++.+
T Consensus 218 ~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr--~E~C~~I~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 218 LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR--DEICKSIAESGGLDTLLRCIDDS 295 (461)
T ss_pred cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHhhh
Confidence 88764332 12235678888888873 3688999999999999987 7899999999999999999988
Q ss_pred CChh---hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc-cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142 156 PSQS---VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI 231 (383)
Q Consensus 156 ~~~~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l 231 (383)
.+.. ....+++.|+.++ ++++....+++.|+.+.++.++. +..+|.+...++.+++-++...|+....+++.|+-
T Consensus 296 n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a 374 (461)
T KOG4199|consen 296 NEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAA 374 (461)
T ss_pred chhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchH
Confidence 3333 4567888888887 45557778999999999998774 44489999999999999999999999999999999
Q ss_pred HHHHHHhhc-C-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037142 232 GPLVNLLQN-A-VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299 (383)
Q Consensus 232 ~~L~~ll~~-~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l 299 (383)
...++.|+. + ...+++.|||+|.|++.. +.++...++. .+++.|+...+..++.+...+-.+|.-+
T Consensus 375 ~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 375 DLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 999999974 3 678999999999999987 4567777666 4678888888888777776666666544
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.6e-16 Score=134.18 Aligned_cols=326 Identities=17% Similarity=0.132 Sum_probs=255.8
Q ss_pred hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
.+++..+.+.|+++.|++++..++++++...+..+.|++.++ ..+..++..|.+|.+..+|.++ .-...|+..+..
T Consensus 335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d---~~~~iA~~~lYh 410 (791)
T KOG1222|consen 335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSD---TKHGIALNMLYH 410 (791)
T ss_pred ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCc---ccchhhhhhhhh
Confidence 467888999999999999999999999999999999999876 7888899999999999999432 234567888888
Q ss_pred hcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHH
Q 037142 87 LCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQA 164 (383)
Q Consensus 87 l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a 164 (383)
++.+...+.......+++.+.+.+- ..+.++-...+....|+|.+ ..+.+.+++...+..|+..- +..|+ + .
T Consensus 411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln--kRNaQlvceGqgL~~LM~ra~k~~D~-l---L 484 (791)
T KOG1222|consen 411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN--KRNAQLVCEGQGLDLLMERAIKSRDL-L---L 484 (791)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc--cccceEEecCcchHHHHHHHhcccch-H---H
Confidence 9888766666777889999887665 44566666666666788876 45666677766677776654 44443 2 3
Q ss_pred HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--c
Q 037142 165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA--V 242 (383)
Q Consensus 165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--~ 242 (383)
...+++++.+.......+++ .+.-|...++...++....+++++++|+.-.+-+....+.+.+.+|.+-..+..+ .
T Consensus 485 mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e 562 (791)
T KOG1222|consen 485 MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE 562 (791)
T ss_pred HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc
Confidence 56788898887765555554 4666777777665788899999999999887767777777899999999999864 5
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142 243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA 320 (383)
Q Consensus 243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 320 (383)
.++..+.+.+++.++.. ......+...++++.|+++++. .|.+.+.+.+..+..++..... ..
T Consensus 563 ddLvL~~vi~~GT~a~d--~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~ 627 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMARD--LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RR 627 (791)
T ss_pred hhhhhHHHHHhhhhhhh--hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HH
Confidence 56888888888888865 5666677788999999999985 4778888999999999886322 23
Q ss_pred HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
-++.+...--.+.+|.+..|.+|++.|...|.-..+.++
T Consensus 628 ~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 628 LMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 456777777889999999999999999988887766665
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.72 E-value=1.6e-14 Score=133.73 Aligned_cols=328 Identities=16% Similarity=0.145 Sum_probs=250.2
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC-CChh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR-PIFD 97 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~ 97 (383)
.+.+..+|++.+.+....++.+|..+.... ..... ..+..+.|...| .++++.++..+++.+.++..++.. ....
T Consensus 40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 40 EPVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 345778888888888899999999988643 22222 345677888888 688999999999999999987633 2334
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
...++++.++.++.+++.++...|+.+|..++.. +.....+.+.+..+.|..++..+++.++..++.++.+++..+++
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 4488999999999999999999999999999987 55666777878889999999998889999999999999999888
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHH------HHHHH
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIK------KEAAW 251 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~------~~a~~ 251 (383)
......+.|+++.++..+.++ |.-++.+++.++..++. .+...+.+.+.|+++.|..++.+...+.+ -..+.
T Consensus 194 ~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 888888899999999999997 99999999999999998 56888999999999999999976422211 22346
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH
Q 037142 252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK 331 (383)
Q Consensus 252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (383)
+.++++.. ++....... ..++..+.+++.+.|+..+..|+.++..+....+..+... ....+.+.. .+..
T Consensus 272 f~g~la~~-~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~--~~~~~~~~~------~l~~ 341 (503)
T PF10508_consen 272 FFGNLARV-SPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLL--QKQGPAMKH------VLKA 341 (503)
T ss_pred HHHHHHhc-ChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHH--hhcchHHHH------HHHH
Confidence 67777775 233332211 2367778888899999999999999999986554332110 000011111 2344
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCc
Q 037142 332 IENLQRHDNYEIHEKSAKILETYWCGRVVGPQP 364 (383)
Q Consensus 332 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 364 (383)
+-....++..+++-++...+..++....+++..
T Consensus 342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~ 374 (503)
T PF10508_consen 342 IGDAIKSGSTELKLRALHALASILTSGTDRQDN 374 (503)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence 445566677888999999999988766553333
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.8e-14 Score=119.05 Aligned_cols=318 Identities=14% Similarity=0.187 Sum_probs=245.1
Q ss_pred hCCChHHHHHhhC---CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCC
Q 037142 15 DHGAVPIFVKLLA---SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGG 90 (383)
Q Consensus 15 ~~g~i~~L~~lL~---~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~ 90 (383)
..|..+.++..+. +++..+...++.+|..+....|++ .+..+...++.+|..+ .+.++....+..+..-|..
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3567777666654 477888999999999998776654 4566788889998643 4667777777777777766
Q ss_pred CCCC-ChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCc---------hHHHHHHHhCcHHHHHHhcCC-CCh
Q 037142 91 KPRP-IFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKN---------DEIQAVIEAGVCPRLVKLLGH-PSQ 158 (383)
Q Consensus 91 ~~~~-~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~---------~~~~~~~~~~~i~~l~~~L~~-~~~ 158 (383)
.+.. ......++.+.+.+.+... ...+.+.++|+++.+... ++ ...+.+...|++..|++.++- -+|
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 6443 4444578899998777643 456888999999998865 22 344567777888999999876 468
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH---HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI---KNYACWIISNITAGNREQIQAVIDAGLIGPLV 235 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~---~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~ 235 (383)
.+....+.+|..++-.++ ..+.+.+.|+++.++.++.+..+... .+.++..|+.++ ++++.+..+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence 899999999999987655 55668899999999999987524444 456777788774 5669999999999999999
Q ss_pred HHhh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhchhcccCcC
Q 037142 236 NLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD--PQIVTVCLKALENILKVGEAEKNTDT 311 (383)
Q Consensus 236 ~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~ 311 (383)
.++. ..++.+..+++.+++.++.. .+++...+++.|+-...++.++..+ ..++.++++++.|++..+.....
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR-~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~--- 410 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLR-SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT--- 410 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhc-CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc---
Confidence 9985 46899999999999999988 5788888899999999999888653 47999999999999987665433
Q ss_pred CCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
.+ -..|++.|.+.-...++.....+..+|..+
T Consensus 411 ----------~~-l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 411 ----------IL-LANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred ----------hH-HhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 23 445568888887777877777777777654
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-15 Score=130.12 Aligned_cols=325 Identities=15% Similarity=0.095 Sum_probs=233.7
Q ss_pred HHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-----C-CChhHHHHHHH
Q 037142 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-----H-ENLSMKRIATW 82 (383)
Q Consensus 9 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----~-~~~~~~~~a~~ 82 (383)
.+++-++.+.++.|.+..++++.++-.+++++|+|++.++.+.|..+.+.|+-..++.+|+. . .+.+....+..
T Consensus 79 F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g 158 (604)
T KOG4500|consen 79 FRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFG 158 (604)
T ss_pred HHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHH
Confidence 34444667788888888888999999999999999999999999999999998888888841 1 14467777888
Q ss_pred HHHhhcCCC-CCCChhhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchH-HHHHHHhCcHHHHHHhcCC-CC
Q 037142 83 TLSNLCGGK-PRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDE-IQAVIEAGVCPRLVKLLGH-PS 157 (383)
Q Consensus 83 ~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~i~~l~~~L~~-~~ 157 (383)
.|.|..-++ .-+.+....|+++.|...+. -++...-+.......++... -.+. .....+..+.-.+++++.+ -+
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~-~~e~~~~~~~d~sl~~~l~~ll~~~v~ 237 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF-VCEMLYPFCKDCSLVFMLLQLLPSMVR 237 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH-HHHhhhhhhccchHHHHHHHHHHHhhc
Confidence 899988876 33345556899998888876 33445555555555554433 1221 2223344556667777755 45
Q ss_pred hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc-------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC-
Q 037142 158 QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-------TSIKNYACWIISNITAGNREQIQAVIDAG- 229 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-------~~~~~~a~~~l~nl~~~~~~~~~~~~~~~- 229 (383)
+.+..-++..+...+.++. ..-.+.+.|.+..++.++..-.+ -.+...++....-+..++ +..+++...+
T Consensus 238 ~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~ 315 (604)
T KOG4500|consen 238 EDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQ 315 (604)
T ss_pred cchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcH
Confidence 6677778888888886655 44458888999999988865211 122233444444444555 5666777544
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhch
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-----PDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~al~~l~~l~~~~~ 304 (383)
+++.+..++.+.+......+..+|+|+++. ...+.++++.+++..|++++.. ++.+++..++.+|.|+...-.
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~--D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARR--DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 899999999999999999999999999998 5778888999999999998863 466889999999999986433
Q ss_pred hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 037142 305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILE 352 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 352 (383)
+ ...+...|..+.+...+....+.+..+-...+.
T Consensus 394 n--------------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlr 427 (604)
T KOG4500|consen 394 N--------------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLR 427 (604)
T ss_pred c--------------hhhccccchHHHHHHHHHhcCCcchHHHHHHHH
Confidence 2 223567788887777777666666555555544
No 20
>PRK09687 putative lyase; Provisional
Probab=99.70 E-value=6.2e-15 Score=125.36 Aligned_cols=255 Identities=17% Similarity=0.133 Sum_probs=199.1
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
--++.|.+.|.+.+..++..|++.|..+.. ..+++.+..++ .++++.++..++++|+.+......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELC-SSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccc---
Confidence 358899999999999999999999998763 23466777877 788999999999999998753211
Q ss_pred hhhhchhHHHHHh-hccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 97 DQVRPCLPTLAQL-VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 97 ~~~~~~i~~l~~l-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
....++.|..+ ++++++.++..++.+|++++.. ..... ...++.+...+.++++.|+..+..+|+.+.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~~~-----~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKK-NPLYS-----PKIVEQSQITAFDKSTNVRFAVAFALSVIN--- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-ccccc-----hHHHHHHHHHhhCCCHHHHHHHHHHHhccC---
Confidence 33577888877 6788999999999999999755 21111 124566778888999999999999997653
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
+...++.|+.++.++ ++.+|..|+.+|+.+...++ ...+.|+..+.+.+..||..|+++|+.
T Consensus 157 --------~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 157 --------DEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred --------CHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 124689999999998 99999999999999944443 356678889999999999999999998
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH
Q 037142 256 ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL 335 (383)
Q Consensus 256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l 335 (383)
+-.. ..++.|++.+++++ ++..++.+|..+-. ...++.|.++
T Consensus 219 ~~~~------------~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------------------~~a~p~L~~l 260 (280)
T PRK09687 219 RKDK------------RVLSVLIKELKKGT--VGDLIIEAAGELGD------------------------KTLLPVLDTL 260 (280)
T ss_pred cCCh------------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------------------HhHHHHHHHH
Confidence 6421 36889999998866 55667777765532 2346788888
Q ss_pred hc-CCCHHHHHHHHHHHHH
Q 037142 336 QR-HDNYEIHEKSAKILET 353 (383)
Q Consensus 336 ~~-~~~~~v~~~a~~~l~~ 353 (383)
++ +++..|..++.+.+..
T Consensus 261 ~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 261 LYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HhhCCChhHHHHHHHHHhc
Confidence 86 8899999999988764
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=2.5e-15 Score=144.14 Aligned_cols=267 Identities=19% Similarity=0.178 Sum_probs=220.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-----------CCChhHHHHHHHHHHhhcCCCCC-C-Chhhhhch
Q 037142 36 QSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-----------HENLSMKRIATWTLSNLCGGKPR-P-IFDQVRPC 102 (383)
Q Consensus 36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----------~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~~~~~ 102 (383)
.|+..|..++. ++++|..+.+.|++..+-.++.- .....+++.+..+|.||...+.. + ...-..|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 45566666665 46999999999999999887731 12457899999999999988732 2 33345899
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCCccccc
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDYSQTLY 181 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 181 (383)
+..++..+.+...++....+.+|.||+...+......+.+.|-+..|+.+- +......+...+.+||||+.+..+++..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 999999999999999999999999999873334445566778888887764 4466688999999999999888877776
Q ss_pred eecC-CChHHHHHhhcccc---chhHHHHHHHHHHHHh---cCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142 182 IINC-GALPYLLGLLIDNH---KTSIKNYACWIISNIT---AGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254 (383)
Q Consensus 182 l~~~-~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 254 (383)
+... |.+..|+.+|+... .-.+.+.+-++|.|.. +.+..+++.+.+++++..|++.|.+.+..+..++|.+|+
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 7664 88999999997541 3467778888888765 456788888899999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
||... +++..+.|++.|.++.|..++.+++..+..-+..+|.|++.+-.
T Consensus 556 NLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 556 NLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99988 57889999999999999999999999999999999999998654
No 22
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.65 E-value=4.4e-14 Score=129.60 Aligned_cols=303 Identities=17% Similarity=0.175 Sum_probs=223.5
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC---
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR--- 93 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~--- 93 (383)
--+|..+.+|.++++.+|..|+..+..++..+.+.+..+...|+|+.|+.+| ++.+.+++.+|+++|.||......
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll-~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALL-DHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHh-cCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 3467788999999999999999999999999999999999999999999999 789999999999999999988743
Q ss_pred CChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--------------CCh
Q 037142 94 PIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--------------PSQ 158 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--------------~~~ 158 (383)
.-.....++++.++++++. .|.++++.+...|+||+.. +.....++.+ .++.|..-+-. .+.
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence 2333448999999999985 7899999999999999976 3333334443 56666665422 135
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhcc-----ccchhHHHHHHHHHHHHhcCCH-----HHH-----
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLID-----NHKTSIKNYACWIISNITAGNR-----EQI----- 222 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~-----~~~~~~~~~a~~~l~nl~~~~~-----~~~----- 222 (383)
.+...+.++|+|++....+..+.+-+. |+++.|+..+++ ..+....++++.++.|+...-. ...
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 788999999999998766666666664 889999988862 2256677888888888863211 000
Q ss_pred ---------------------HH----------------------HHhcCChHHHHHHh-hcCchhHHHHHHHHHHHhcC
Q 037142 223 ---------------------QA----------------------VIDAGLIGPLVNLL-QNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 223 ---------------------~~----------------------~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~ 258 (383)
.. +....++..=..++ .+.+..+.+.++.+|.|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 00 00000111212223 24577888999999999988
Q ss_pred CCC---HHHHHHH-HHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142 259 GGT---HEQIKYL-EREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN 334 (383)
Q Consensus 259 ~~~---~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 334 (383)
... ......+ .++.+.++|+++++.++..++..+..+|.|+...... ...+ ..++++.|.+
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--------------k~li-gk~a~~~lv~ 613 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--------------KELI-GKYAIPDLVR 613 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--------------hhhh-hcchHHHHHH
Confidence 752 2233333 5688999999999999999999999999999875432 2223 3556666666
Q ss_pred HhcC
Q 037142 335 LQRH 338 (383)
Q Consensus 335 l~~~ 338 (383)
.+..
T Consensus 614 ~Lp~ 617 (717)
T KOG1048|consen 614 CLPG 617 (717)
T ss_pred hCcC
Confidence 6554
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.64 E-value=3e-14 Score=121.46 Aligned_cols=330 Identities=14% Similarity=0.129 Sum_probs=245.1
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCC-------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-CCC
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLAS-------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-NHE 72 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~-------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~ 72 (383)
|+|+.+.|+|..+.+.|+-..++..|+. .+.+...-++..|.|..-++++++..+++.|+++.|...+. ..+
T Consensus 113 NiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~q 192 (604)
T KOG4500|consen 113 NICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQ 192 (604)
T ss_pred hhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccc
Confidence 8899999999999999998888888764 22467777889999999999999999999999999988773 345
Q ss_pred ChhHHHHHHHHHHhhcCCCC--CCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142 73 NLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL 149 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l 149 (383)
+.+.-+.......|+.+-.. ..+......+.-.+++++.. ..+.+.+.+...+...+++ +.-.-.+.+.|.+..+
T Consensus 193 Naa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen--d~Vkl~la~~gl~e~~ 270 (604)
T KOG4500|consen 193 NAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN--DLVKLSLAQNGLLEDS 270 (604)
T ss_pred cHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC--cceeeehhhcchHHHH
Confidence 66666776666666654331 12333445666677777764 4577888888899999876 3444456777888888
Q ss_pred HHhcCC-C-------ChhhHHHHHHHHhhhhcCCCccccceecCC-ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142 150 VKLLGH-P-------SQSVLTQALHTVGNIARGDYSQTLYIINCG-ALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE 220 (383)
Q Consensus 150 ~~~L~~-~-------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~ 220 (383)
..+++. + .......++....-+..+++.. +.+...+ +++.+.+.+.++ +..+...+.-+++|++..+ .
T Consensus 271 ~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~ 347 (604)
T KOG4500|consen 271 IDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-D 347 (604)
T ss_pred HHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-h
Confidence 888765 2 2233344555555555666543 3354444 899999999999 9999999999999999877 6
Q ss_pred HHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 037142 221 QIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA 295 (383)
Q Consensus 221 ~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~ 295 (383)
....+++.+++..|++++.. ++.+++..++.+|.|++.- ......+...|+.+.++.+++...|.++..-+..
T Consensus 348 ~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgT 425 (604)
T KOG4500|consen 348 ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGT 425 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHH
Confidence 67788899999999999864 4778889999999999875 4567777899999999999999999888888888
Q ss_pred HHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHH-HHHHHHH
Q 037142 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYE-IHEKSAK 349 (383)
Q Consensus 296 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~-v~~~a~~ 349 (383)
+.-+...-++ ..+++..+-..+++|.+-..+++.. |.-....
T Consensus 426 lrM~~d~qe~------------~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnR 468 (604)
T KOG4500|consen 426 LRMIRDSQEY------------IACELAKNPELFEKLVDWSKSPDFAGVAGESNR 468 (604)
T ss_pred HHHHHhchHH------------HHHHHhcCHHHHHHHHHhhhCCccchhhhhhhH
Confidence 7655543221 2345555556677777777777664 4333333
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=2.8e-14 Score=118.54 Aligned_cols=227 Identities=20% Similarity=0.198 Sum_probs=174.9
Q ss_pred HHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 13 VVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 13 ~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
+++.+-++.|+.+|+. .||.+++.|+.++++.+.. +..++.+.+.|+++.+..+| +++++.++..|++++.|++...
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCCh
Confidence 3667788999999996 7999999999999998764 58999999999999999999 7899999999999999999876
Q ss_pred CCCChhhhhchhHHHHHhhcc--CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHh
Q 037142 92 PRPIFDQVRPCLPTLAQLVHS--NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG 169 (383)
Q Consensus 92 ~~~~~~~~~~~i~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~ 169 (383)
+.... +...++.+.+...+ -+.+++..++.+|.+++.. ++....+. +.++.++.+|.+++..++..++++|.
T Consensus 86 en~~~--Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 86 ENQEQ--IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhHHH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44332 34456666654443 3688999999999999865 33434443 36899999999999999999999999
Q ss_pred hhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-------------HHHHHHH-h-cCChHHH
Q 037142 170 NIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-------------EQIQAVI-D-AGLIGPL 234 (383)
Q Consensus 170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-------------~~~~~~~-~-~~~l~~L 234 (383)
||+.+.. ..+.++..+++..++.++....+.++...++..+.|+..+-. .....++ + ..+.+.|
T Consensus 160 nLS~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 160 NLSENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL 238 (254)
T ss_pred HhccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence 9997655 556688889999999999887578889999999999964211 1111222 2 2245556
Q ss_pred HHHhhcCchhHHHH
Q 037142 235 VNLLQNAVFYIKKE 248 (383)
Q Consensus 235 ~~ll~~~~~~v~~~ 248 (383)
..+..|++++||..
T Consensus 239 ~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 239 QALANHPDPEVKEQ 252 (254)
T ss_pred HHHHcCCCHHHhhh
Confidence 66666666666654
No 25
>PRK09687 putative lyase; Provisional
Probab=99.61 E-value=6.3e-14 Score=119.24 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=179.0
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
.+++.+.+++.++++.+|..++++|+.+...... ....++.|..++.+++++.++..++.+|++++......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 4678888999999999999999999998753211 11346777777557889999999999999997543211
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
...+++.+...+.++++.++..++++|..+... ..++.|+.+|.++++.|+..+..+|+.+...++
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~------------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE------------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH------------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 233666777888899999999999999776533 267999999999999999999999999843222
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
..++.|+..+.+. ++.+|..|++.|+.+-. ...+|.|+..+.+++ ++..++.+|+++
T Consensus 192 ---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 192 ---------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred ---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 5688899999988 99999999999998632 246888899998766 678899999998
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHH
Q 037142 257 TFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALEN 298 (383)
Q Consensus 257 ~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~ 298 (383)
... ..++.|..+++ ++|+.++..+.++|..
T Consensus 249 g~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 249 GDK------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred CCH------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 642 25888999986 7899999999988753
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.59 E-value=3.9e-13 Score=120.55 Aligned_cols=342 Identities=16% Similarity=0.168 Sum_probs=222.8
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC-hhHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN-LSMK 77 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~-~~~~ 77 (383)
|++.+.+++...+++.|.++.+..+++. ..++.+...+.+++............+.+.+.++.|+++| +++| ..++
T Consensus 35 N~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LL-s~sD~~~~l 113 (678)
T KOG1293|consen 35 NLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLL-SESDSLNVL 113 (678)
T ss_pred chhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHh-cCcchHhHH
Confidence 6777888888899999999999999986 4566776777778888877778888899999999999999 6666 8899
Q ss_pred HHHHHHHHhhcCCCCCCChh---hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH-----
Q 037142 78 RIATWTLSNLCGGKPRPIFD---QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL----- 149 (383)
Q Consensus 78 ~~a~~~L~~l~~~~~~~~~~---~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l----- 149 (383)
...+.++.++.+..+..+.. ....+++.+..++..+...+...-+....+++.. .+.....+.+|+.+.+
T Consensus 114 e~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~--~~hq~Il~Na~i~ekI~~l~~ 191 (678)
T KOG1293|consen 114 EKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST--KDHQLILCNAGILEKINILLM 191 (678)
T ss_pred HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc--chhhheeccccchhhHHHHHH
Confidence 99999999998877443322 2355666655555523333333333333333333 1222222223332222
Q ss_pred ----------------------------------------------HHhcCCCChhhHHHHHHHHhhhhcCCCccc----
Q 037142 150 ----------------------------------------------VKLLGHPSQSVLTQALHTVGNIARGDYSQT---- 179 (383)
Q Consensus 150 ----------------------------------------------~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~---- 179 (383)
..++++++.+.+..++.++-++...+.+..
T Consensus 192 ~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~ 271 (678)
T KOG1293|consen 192 YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPW 271 (678)
T ss_pred hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccccccccc
Confidence 333344455555555555555553331000
Q ss_pred -cceecCC----------------------------------------------ChHHHHHhhc----------------
Q 037142 180 -LYIINCG----------------------------------------------ALPYLLGLLI---------------- 196 (383)
Q Consensus 180 -~~l~~~~----------------------------------------------~i~~l~~ll~---------------- 196 (383)
..+.+.| .++...+++.
T Consensus 272 ~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~ 351 (678)
T KOG1293|consen 272 WFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLIL 351 (678)
T ss_pred ceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHH
Confidence 0000110 0111111110
Q ss_pred ------------------------------------cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142 197 ------------------------------------DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 197 ------------------------------------~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
.. +.....+++-++.+++..-......+-...+..+|++++..
T Consensus 352 l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d 430 (678)
T KOG1293|consen 352 LNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD 430 (678)
T ss_pred hhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC
Confidence 01 23344445544544443222222222245678899999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA 320 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 320 (383)
++..|+..+..+|+|+...-+ .....++.+|+++.+.+++.+.++.++..++|+|.++.-.++... .
T Consensus 431 p~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~------------k 497 (678)
T KOG1293|consen 431 PEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE------------K 497 (678)
T ss_pred cchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH------------H
Confidence 999999999999999987643 567788899999999999999999999999999999987665432 1
Q ss_pred HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
..+-.--+...|..+.++|+..|++.|.+++.++..+..
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 222222245788999999999999999999999988843
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.59 E-value=4.4e-12 Score=112.28 Aligned_cols=322 Identities=16% Similarity=0.173 Sum_probs=235.9
Q ss_pred CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhc-----CChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142 17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGE-----AALIPLLTQLNNHENLSMKRIATWTLSNLCGG 90 (383)
Q Consensus 17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (383)
..+..|+.+++. .++++..+++..+..+..+++.....+.+. ....+++.+| ..+|.-+...++.+++.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 568888899886 788999999999999998887766666653 4667788888 567889999999999999876
Q ss_pred CCCCCh-hhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHH
Q 037142 91 KPRPIF-DQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALH 166 (383)
Q Consensus 91 ~~~~~~-~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~ 166 (383)
.+.... ......++.+...+++. +...+..++.++..+.+. ++....+.+.++++.|+.+|+. .+.+++..++-
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~--~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV--DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC--chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 543322 12233555666666654 477788888999999987 4555667777889999999986 35689999999
Q ss_pred HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC------HHHHHHHHhcCChHHHHHHhhc
Q 037142 167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN------REQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~------~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
+++.++...+ ....+...++++.++.+++....+++.+-++.++.|+...+ ......+++.|+.+.+-.+...
T Consensus 210 ~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred HHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 9999997665 44556677999999999988778999999999999998742 2344555677776655554443
Q ss_pred --CchhHHHHHHHH-------HHHhcC--------------CC----C----HHHHHHHHHc--CChHHHHhhcC-CCCH
Q 037142 241 --AVFYIKKEAAWA-------ISNATF--------------GG----T----HEQIKYLERE--GCIKPLCDLLL-CPDP 286 (383)
Q Consensus 241 --~~~~v~~~a~~~-------l~~l~~--------------~~----~----~~~~~~l~~~--~~i~~L~~ll~-~~~~ 286 (383)
.++++....-.. +..++. .. + .++...+-++ .++..|+++++ +.|+
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 355444322111 111110 00 0 2344454443 36788999885 5678
Q ss_pred HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142 287 QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355 (383)
Q Consensus 287 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 355 (383)
.+...||.=++.+++..+. -+..+...|+-+.+.+|+.|+|++|+..|+.++..+.
T Consensus 369 ~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888899999999986542 3556889999999999999999999999999988764
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.8e-14 Score=126.16 Aligned_cols=317 Identities=15% Similarity=0.177 Sum_probs=220.3
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHh----cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLG----EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~ 92 (383)
.++|.|.++|.+++...++-|+.+|..+++++++.-+.-.. .-.+|.++++. +++++.+|..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 36789999999999999999999999999988765543111 12478888998 78899999999999998887654
Q ss_pred CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
..-...+..++..+..+-.+.++++|+++|.++..|... -.+....... ++++.+++.-++.|.+|...||.....++
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 444555577888888888899999999999999999987 3333333322 58889999999999999999999999998
Q ss_pred cCCCccccceecC---CChHHHHHhhcccc--------------------------------------------------
Q 037142 173 RGDYSQTLYIINC---GALPYLLGLLIDNH-------------------------------------------------- 199 (383)
Q Consensus 173 ~~~~~~~~~l~~~---~~i~~l~~ll~~~~-------------------------------------------------- 199 (383)
.... ... ++.. .++|.|+.-+....
T Consensus 285 eqpi-~~~-~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 285 EQPI-CKE-VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred cCcC-cHH-HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 7652 222 2221 33444443222110
Q ss_pred -----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCC----hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142 200 -----KTSIKNYACWIISNITAGNREQIQAVIDAGL----IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER 270 (383)
Q Consensus 200 -----~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~ 270 (383)
+..+|+.++.+|.-++ .++...+ +|.|-+.|.+....+|+.++.+++.++.++-......+-+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe 434 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE 434 (885)
T ss_pred ccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH
Confidence 0234444333333333 2223334 4445555556789999999999999998764444444443
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 037142 271 EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKI 350 (383)
Q Consensus 271 ~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~ 350 (383)
++|.|+++|.++.+-||...+|.|.++....-.... ...+..+ ++.|.+.+-+.+..|++.|--+
T Consensus 435 --Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-------~~~f~pv------L~~ll~~llD~NK~VQEAAcsA 499 (885)
T KOG2023|consen 435 --LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-------DEYFKPV------LEGLLRRLLDSNKKVQEAACSA 499 (885)
T ss_pred --HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-------HhhhHHH------HHHHHHHHhcccHHHHHHHHHH
Confidence 799999999999999999999999988765433221 0111222 2333333446788999999888
Q ss_pred HHHhcCCCCCC
Q 037142 351 LETYWCGRVVG 361 (383)
Q Consensus 351 l~~~~~~~~~~ 361 (383)
...+-++..++
T Consensus 500 fAtleE~A~~e 510 (885)
T KOG2023|consen 500 FATLEEEAGEE 510 (885)
T ss_pred HHHHHHhccch
Confidence 87776665543
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=5e-13 Score=132.47 Aligned_cols=274 Identities=16% Similarity=0.131 Sum_probs=192.9
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
+.+.++.|++.|.++++.+|..|+..|+.+.. .+.++.|...| ++++..++..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccC--
Confidence 45678899999999999999999999998752 24578899999 78899999999999988854321
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
..+.+...++++++.++..++.+|..+... + ...++..|.++++.++..++.+|+.+-
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAG-D------------AALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccC-C------------HHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 125677888888999999999888877543 1 234567788888888888888887651
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 254 (383)
-.+.+...+.++ ++.+|..++.+|+.+.... ...++.|..++.++++.+|..|+.+|+
T Consensus 743 ------------~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg 800 (897)
T PRK13800 743 ------------DVESVAGAATDE-NREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALA 800 (897)
T ss_pred ------------CcHHHHHHhcCC-CHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 123456677777 8888888888888775432 123566777777788888888888887
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN 334 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 334 (383)
.+.... ..+..+...+.++++.++..|+++|..+-. ...++.|..
T Consensus 801 ~~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------------------~~a~~~L~~ 845 (897)
T PRK13800 801 ELGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAA------------------------DVAVPALVE 845 (897)
T ss_pred hcCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------------------cchHHHHHH
Confidence 775320 123456667777777888888887764421 112366677
Q ss_pred HhcCCCHHHHHHHHHHHHHhc-CCCCCCCCcccccccccccchhhhcc
Q 037142 335 LQRHDNYEIHEKSAKILETYW-CGRVVGPQPGLLYAGNEENEEEDALG 381 (383)
Q Consensus 335 l~~~~~~~v~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (383)
++.+++..|+..|...|-.+- .......+...+.+.+...|..++.+
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~a 893 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRA 893 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777888888888888877751 11122444455555566666665544
No 30
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.7e-13 Score=123.61 Aligned_cols=307 Identities=18% Similarity=0.187 Sum_probs=235.5
Q ss_pred CCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 16 HGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 16 ~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
.-++|.|+.+|+. .+.++...|+++|.+++..-|.-...+++.++||.|+.-|..-+=.++.++++.+|-.|++..+
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 3468999999997 7799999999999999998888899999999999999988555567889999999999998754
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
......|++-..+..+..-...+++.|+.+..|+|....++....+.+ .+|.|..+|...|.+....++-++..++.+
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 335568899999999998889999999999999998756667777776 589999999999999999999999998844
Q ss_pred ---CCccccceecCCChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhc--------------------
Q 037142 175 ---DYSQTLYIINCGALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDA-------------------- 228 (383)
Q Consensus 175 ---~~~~~~~l~~~~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~-------------------- 228 (383)
.++..+++...|++....+++.-.+ +..+....++.++.++.+++.....+...
T Consensus 366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas 445 (1051)
T KOG0168|consen 366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANAS 445 (1051)
T ss_pred cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccc
Confidence 4445556677777777776665321 11222223333333332222211111111
Q ss_pred --------------------------------------------------------------------------------
Q 037142 229 -------------------------------------------------------------------------------- 228 (383)
Q Consensus 229 -------------------------------------------------------------------------------- 228 (383)
T Consensus 446 ~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t 525 (1051)
T KOG0168|consen 446 LHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGT 525 (1051)
T ss_pred cccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCccc
Confidence
Q ss_pred -----------------------------CChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHH
Q 037142 229 -----------------------------GLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLERE-GCIKPL 277 (383)
Q Consensus 229 -----------------------------~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~-~~i~~L 277 (383)
.++|.|+++..+ .++.||..+..+|..+....+.+.+..++.+ ++-..+
T Consensus 526 ~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~l 605 (1051)
T KOG0168|consen 526 SRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHL 605 (1051)
T ss_pred chhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHH
Confidence 135556666554 4789999999999999988888998888874 566667
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142 278 CDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH 338 (383)
Q Consensus 278 ~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 338 (383)
--++.++|..+..-|+....-+++.-+ +.|...|..+|++..+.+|...
T Consensus 606 AG~lsskD~~vlVgALQvAEiLmeKlp------------d~F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 606 AGMLSSKDLTVLVGALQVAEILMEKLP------------DTFSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred HhhhhcCCCeeEeehHHHHHHHHHHhH------------HHhhhhHhhhhHHHHHHHHhcc
Confidence 779999999999999998888887544 4578889999999999999773
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.2e-12 Score=122.93 Aligned_cols=322 Identities=14% Similarity=0.142 Sum_probs=226.0
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC--C
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP--R 93 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~--~ 93 (383)
++++.|++..+++++..|+.|+.+|..+...-.. .+..+ ..+.+.+.+.+ .+++..++..++++++.++...+ .
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTM-TDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHhccch
Confidence 4577788888999999999999999998853221 11111 12244556666 45544599999999999987664 2
Q ss_pred CChhhhhchhHHHH----HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHH
Q 037142 94 PIFDQVRPCLPTLA----QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALHT 167 (383)
Q Consensus 94 ~~~~~~~~~i~~l~----~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~~ 167 (383)
.........+|.++ ..+..+|......++.++..++.. .+...+...+. +++..+...++ -++.+|..|+.+
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~-~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES-EPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh-chHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHH
Confidence 22333355555544 445567777788899999999987 66666655543 66666666665 357788888888
Q ss_pred HhhhhcCCCcccccee--------------------------------------------------cCC-------ChHH
Q 037142 168 VGNIARGDYSQTLYII--------------------------------------------------NCG-------ALPY 190 (383)
Q Consensus 168 L~~l~~~~~~~~~~l~--------------------------------------------------~~~-------~i~~ 190 (383)
|..++..-+...+... .-| +++.
T Consensus 273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~ 352 (1075)
T KOG2171|consen 273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEA 352 (1075)
T ss_pred HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHH
Confidence 8777654221110000 000 1334
Q ss_pred HHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142 191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER 270 (383)
Q Consensus 191 l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~ 270 (383)
+..++.+. +...|++++.+|+.++.|+.+.....++ .+++.++..+.++++.||..|+.+++.++..-.+...++ ..
T Consensus 353 l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~ 429 (1075)
T KOG2171|consen 353 LEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HH 429 (1075)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HH
Confidence 45566677 8999999999999999999877766443 588888999999999999999999999998865444444 55
Q ss_pred cCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHH-HHHHHhcCCCHHHHHHHH
Q 037142 271 EGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE-KIENLQRHDNYEIHEKSA 348 (383)
Q Consensus 271 ~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~L~~l~~~~~~~v~~~a~ 348 (383)
..+++.|+..+++. ++.++..|..++.|+.+.+.+.. ..+|...+ ++ ++..|..++.+.+++.+.
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~--------l~pYLd~l-----m~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI--------LEPYLDGL-----MEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH--------HHHHHHHH-----HHHHHHHHhcCCchhHHHHHH
Confidence 57888899988875 66999999999999999888764 23444444 34 677788888899999998
Q ss_pred HHHHHhcCCCC
Q 037142 349 KILETYWCGRV 359 (383)
Q Consensus 349 ~~l~~~~~~~~ 359 (383)
..|-.....-+
T Consensus 497 taIasvA~AA~ 507 (1075)
T KOG2171|consen 497 TAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHh
Confidence 77765444433
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.52 E-value=1.9e-13 Score=102.27 Aligned_cols=118 Identities=32% Similarity=0.480 Sum_probs=109.6
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142 140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
+.+.|+++.++.++.++++.++..++++|++++...+.....+.+.|+++.+.+++.++ ++.++..++++|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 45678999999999999999999999999999998777778888889999999999998 99999999999999999887
Q ss_pred HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
.....+.+.|+++.+..++.+.+..+++.++|++.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999873
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=6.7e-13 Score=99.33 Aligned_cols=117 Identities=32% Similarity=0.521 Sum_probs=108.5
Q ss_pred eecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC
Q 037142 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT 261 (383)
Q Consensus 182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 261 (383)
+.+.|+++.+++++.++ ++.++..+++++++++..+++....+++.++++.+.+++.++++.++..|+|+|+|++.. .
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-P 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-c
Confidence 45779999999999998 899999999999999999889999999999999999999999999999999999999987 4
Q ss_pred HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142 262 HEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 262 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~ 300 (383)
+.....+.+.|+++.|.+.+.+.+.+++..++++|.+++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 567777788999999999999999999999999999986
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.4e-11 Score=116.02 Aligned_cols=303 Identities=18% Similarity=0.190 Sum_probs=215.7
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCC---hHHHHHHHhcCChHHHHHHhc---CCCChhHHHHHHHHHHhhcCCC
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAES---PRFRDLVLGEAALIPLLTQLN---NHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~---~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
+.+.|.+.+.+++..+|..|+++++.++... ...++.+ ...+|.++..+. +..+......++.+|..+....
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~--~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF--RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH--HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 4556677777766669999999999988544 2333333 245666766663 3446666778888888888877
Q ss_pred CCCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHH--HHh------------------------
Q 037142 92 PRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAV--IEA------------------------ 143 (383)
Q Consensus 92 ~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~------------------------ 143 (383)
|..-......++...+....++ +..+|..|+.++..+++. .+...+.. .-.
T Consensus 238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 7666666677888888888765 488999998888887765 22111110 000
Q ss_pred ------------------------C-------cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHH
Q 037142 144 ------------------------G-------VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLL 192 (383)
Q Consensus 144 ------------------------~-------~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~ 192 (383)
| +++.+-.++.++++.-+.+++.+|+.++.+..+.....++ .+++.++
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl 395 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVL 395 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHH
Confidence 0 3444555667788888999999999999888766554333 5677788
Q ss_pred HhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037142 193 GLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLERE 271 (383)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~ 271 (383)
..+.++ ++.||..|+.+++.++..-....+.-....+.+.|+..+.+ .+++++.+|+.++.|+...+..+.+...++
T Consensus 396 ~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd- 473 (1075)
T KOG2171|consen 396 NGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD- 473 (1075)
T ss_pred hhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-
Confidence 888999 99999999999999998665666666667788889988876 588999999999999998886666655443
Q ss_pred CChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC
Q 037142 272 GCIK-PLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN 340 (383)
Q Consensus 272 ~~i~-~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 340 (383)
+++. .+..++.++.+.+++.++.+|..........-. +|...+ ++.|...+...+
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~---------pY~d~~-----Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI---------PYFDRL-----MPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH---------hHHHHH-----HHHHHHHHhCCC
Confidence 4666 445566678889999999999999987654321 233333 567776655544
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.47 E-value=1.4e-11 Score=116.77 Aligned_cols=295 Identities=22% Similarity=0.240 Sum_probs=219.3
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
-+.+..++++.+++...+.-+.-++..+...+++.... ++..+.+-| .++++.++..|+.++++++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl-~~~n~~~~~lAL~~l~~i~~~------ 109 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDL-NSPNPYIRGLALRTLSNIRTP------ 109 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHH-CSSSHHHHHHHHHHHHHH-SH------
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhh-cCCCHHHHHHHHhhhhhhccc------
Confidence 36777888888899999999999999999887773333 256777888 688999999999999999843
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
.....+++.+.+++.++++.+|+.|+.++..+... .++.... . +++.+..++.++++.++..|+.++..+ ..++
T Consensus 110 ~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVED---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHH---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 45677899999999999999999999999999976 4433322 2 578999999999999999999999999 2232
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
.....+. ...++.+..++... ++..+..+++++..++...+..... ..+++.+..++++.++.|..+|+.++..+
T Consensus 184 ~~~~~~~-~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 184 DSYKSLI-PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHTTHH-HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhH-HHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 2111111 13345555555677 9999999999999998877655522 44677888888899999999999999998
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh
Q 037142 257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ 336 (383)
Q Consensus 257 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~ 336 (383)
... ..... .+++.|..++.++++.++..++..|..++...... +. ...-.+.-+.
T Consensus 259 ~~~--~~~~~-----~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~----------------v~--~~~~~~~~l~ 313 (526)
T PF01602_consen 259 SPS--PELLQ-----KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA----------------VF--NQSLILFFLL 313 (526)
T ss_dssp SSS--HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH----------------HG--THHHHHHHHH
T ss_pred hcc--hHHHH-----hhHHHHHHHhhcccchhehhHHHHHHHhhcccchh----------------hh--hhhhhhheec
Confidence 865 33222 37889999999999999999999999888754111 11 1112233444
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCC
Q 037142 337 RHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 337 ~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.+++..|+.++.+++..+....+
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HHH
T ss_pred CCCChhHHHHHHHHHhhcccccc
Confidence 47777788888877777665543
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.45 E-value=4.1e-11 Score=119.02 Aligned_cols=246 Identities=15% Similarity=0.156 Sum_probs=194.1
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
.+.++.|.+.|+++++.+|..|+.+|..+.... ...+.|...| +++++.++..++.+|..+....
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~---- 715 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHL-GSPDPVVRAAALDVLRALRAGD---- 715 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHh-cCCCHHHHHHHHHHHHhhccCC----
Confidence 467899999999999999999999999885321 1135677888 6789999999999998875321
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
...+++.+.++++.++..++.+|..+.. .+.+...+.++++.|+..++.+|+.+....
T Consensus 716 -------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 716 -------AALFAAALGDPDHRVRIEAVRALVSVDD---------------VESVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred -------HHHHHHHhcCCCHHHHHHHHHHHhcccC---------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 2457788999999999999999987531 134677899999999999999999885432
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
. ..++.|..+++++ ++.+|..++.+|+.+.... ...+.+...+.++++.||..|+.+|+.
T Consensus 774 ~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 774 A---------PAGDAVRALTGDP-DPLVRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAG 833 (897)
T ss_pred c---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 2 3378888999998 9999999999999885321 123457788889999999999999988
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH
Q 037142 256 ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL 335 (383)
Q Consensus 256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l 335 (383)
+... ..++.|..+++++++.|+..|+++|..+- .+ ....+.|...
T Consensus 834 l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~~---------------------~~a~~~L~~a 878 (897)
T PRK13800 834 AAAD------------VAVPALVEALTDPHLDVRKAAVLALTRWP--GD---------------------PAARDALTTA 878 (897)
T ss_pred cccc------------chHHHHHHHhcCCCHHHHHHHHHHHhccC--CC---------------------HHHHHHHHHH
Confidence 7532 24689999999999999999999998861 11 1124667788
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 037142 336 QRHDNYEIHEKSAKILET 353 (383)
Q Consensus 336 ~~~~~~~v~~~a~~~l~~ 353 (383)
+++++.+|+..|...|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999988863
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.44 E-value=7.2e-12 Score=112.58 Aligned_cols=299 Identities=15% Similarity=0.122 Sum_probs=204.1
Q ss_pred cCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHH---HHhcCChHHHHHH----HhcCChH--HHHHHhcCCCC
Q 037142 3 ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALG---NIAAESPRFRDLV----LGEAALI--PLLTQLNNHEN 73 (383)
Q Consensus 3 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~---~l~~~~~~~~~~~----~~~g~i~--~L~~~L~~~~~ 73 (383)
+++.++.+..+.+.|+.+.+.-++..-....|..|+.++. ++...++.....+ ...|+.+ .+.+++ ++++
T Consensus 167 ~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~-k~~~ 245 (678)
T KOG1293|consen 167 LSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLL-KDPD 245 (678)
T ss_pred ccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhh-hCCC
Confidence 5566788888999999999988888878899999999999 7777766555443 3456555 344555 7777
Q ss_pred hhHHHHHHHHHHhhcCCCCCC----C-hhhhhch---------------------------hHHHHHhhcc-CC------
Q 037142 74 LSMKRIATWTLSNLCGGKPRP----I-FDQVRPC---------------------------LPTLAQLVHS-ND------ 114 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~~~~----~-~~~~~~~---------------------------i~~l~~ll~~-~~------ 114 (383)
...+..++.++.++...+... . ......+ .-.+..+.+. .+
T Consensus 246 ~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 246 FSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred ccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 888888888888887765111 0 0111110 0000101110 01
Q ss_pred -HHHHHHHHHHHHHhccCCCchHHHH----------------------HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142 115 -EHVMSNACWGLSLLCDGGKNDEIQA----------------------VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 115 -~~~~~~~~~~l~~l~~~~~~~~~~~----------------------~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l 171 (383)
.+.....+.+-+.+... ....... +.+......+.......|...+.+++.++.++
T Consensus 326 ~~~~~~ellf~~~sl~a~-~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAAS-DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhHHHHHHHHHHHhhc-chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 11111222222233322 1111111 11111112222223346778888999999888
Q ss_pred hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHH
Q 037142 172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAW 251 (383)
Q Consensus 172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 251 (383)
+..-......+-...+..++++++..+ +..++..+++++.|++..-...+..++..|+++.+..++.+.++.+|..+.|
T Consensus 405 srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~ 483 (678)
T KOG1293|consen 405 SRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLW 483 (678)
T ss_pred HHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHH
Confidence 865554444455668899999999888 9999999999999999877788999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
+|.++..+++..........=....+..+..++++.|++++...+.|++..+.
T Consensus 484 ~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 484 VLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 99999998765555555555556667778889999999999999999997643
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.38 E-value=1.1e-10 Score=110.77 Aligned_cols=255 Identities=22% Similarity=0.235 Sum_probs=190.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
++..+.+=|.++++.++..|+++++++. +++..+.+ ++.+.+++ .++++.+|+.|+.++..+....|..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~--- 148 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDL--- 148 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCC---
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHH---
Confidence 5677778888999999999999999998 45555554 67888999 6889999999999999999875432
Q ss_pred hhhc-hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 98 QVRP-CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 98 ~~~~-~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
... .++.+.+++.++++.++..|+.++..+ .. +++....+.. ..++.+..++...++..+..+++.+..++...+
T Consensus 149 -~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~-~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 149 -VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIP-KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp -HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHH-HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred -HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHH-HHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 222 799999999999999999999999999 33 2322222222 256777777788999999999999999886655
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
..... ..+++.+..++.+. ++.+..+++.++..+.... . .-..+++.|..++.++++.+|..++.+|..+
T Consensus 225 ~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 225 EDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred hhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 43311 35788888888888 9999999999999886644 3 2234677899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 257 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
+... +... . .....+..+..++++.++..++..+..++...
T Consensus 295 ~~~~-~~~v----~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 295 AQSN-PPAV----F-NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp CCHC-HHHH----G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred hccc-chhh----h-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 8763 1221 2 12222333334788899999999999888643
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.38 E-value=7.3e-10 Score=105.77 Aligned_cols=259 Identities=16% Similarity=0.094 Sum_probs=190.4
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
++-.++++.+++.+++..+.-.+.+++...++..-. ++..+.+-+ .++|+.+|..|+++++++... ..
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl-~d~Np~IRaLALRtLs~Ir~~------~i 137 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDT-TNSSPVVRALAVRTMMCIRVS------SV 137 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHcCCcH------HH
Confidence 444556667778888888888888888766554322 256677777 688999999999999987654 34
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
...+++.+.+.+.+.++-+|+.|+.++..+... +++ .+.+.++++.+..+|.+.|+.|+.+|+.+|..+....+..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 566788888999999999999999999999876 332 3344578899999999999999999999999998665532
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
.. ...+.+..++..+... ++..+...+.+|......++... ..++..+...+++.++.|.-+|+.++.++..
T Consensus 214 l~--l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 214 IE--SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred hH--HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 21 2234566677777766 78888888888866543332222 2457778888999999999999999999987
Q ss_pred CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
..+++...... ..+-++++.++ +++++++..++..+..++...
T Consensus 286 ~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 286 RCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred cCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence 64444333322 12446677764 577899999998887777644
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2e-09 Score=93.80 Aligned_cols=304 Identities=15% Similarity=0.101 Sum_probs=221.7
Q ss_pred hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
...-..+...+++..|++.|..++.++...+...|..++-.. +.+..+.+.|+++.|++++ ..++++++...+..+.|
T Consensus 294 ~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klf-p~~h~dL~~~tl~LlfN 371 (791)
T KOG1222|consen 294 ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLF-PIQHPDLRKATLMLLFN 371 (791)
T ss_pred hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhc-CCCCHHHHHHHHHHhhh
Confidence 344456788899999999999999999999999999998654 6788888899999999999 78899999999999999
Q ss_pred hcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHH
Q 037142 87 LCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQAL 165 (383)
Q Consensus 87 l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~ 165 (383)
++.+...+...+..|.+|.+..++.++.. ..-|...++.++.. +.....+.-...++.++..+-+ .+.+|-...+
T Consensus 372 lSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d--D~~K~MfayTdci~~lmk~v~~~~~~~vdl~li 447 (791)
T KOG1222|consen 372 LSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD--DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI 447 (791)
T ss_pred ccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC--cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 99998777777889999999999986652 23356677777765 4555566666788888876654 4445544444
Q ss_pred HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-Cchh
Q 037142 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFY 244 (383)
Q Consensus 166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~ 244 (383)
..--|+|.+. .+.+.+.+..++..|+...-...+. --...+.|++.+.......+++ .+..|..++.. .+..
T Consensus 448 a~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~ 520 (791)
T KOG1222|consen 448 ALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSES 520 (791)
T ss_pred HHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHH
Confidence 3335666443 3566677777888888754333133 2345778888876555555554 34556666654 5667
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142 245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL 322 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (383)
.-.++..+++|+... +-+..+.+-+.+++|.+-..+..+ ..+++...+-++..+.... ....+
T Consensus 521 F~~EClGtlanL~v~-dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--------------~cA~L 585 (791)
T KOG1222|consen 521 FGLECLGTLANLKVT-DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--------------DCARL 585 (791)
T ss_pred HHHHHHHHHhhcccC-CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--------------HHHHH
Confidence 888999999999875 334555666789999999988754 4456666666666665432 35667
Q ss_pred HHHhccHHHHHHHhcC
Q 037142 323 VEEAKGLEKIENLQRH 338 (383)
Q Consensus 323 l~~~~~~~~L~~l~~~ 338 (383)
+..+|.++.+.+|+..
T Consensus 586 la~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQA 601 (791)
T ss_pred hCccccHHHHHHHHHh
Confidence 8888899999988764
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.31 E-value=4.8e-10 Score=99.51 Aligned_cols=293 Identities=17% Similarity=0.145 Sum_probs=200.8
Q ss_pred ChHHHHHHHhC-----CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 6 TLEDKKAVVDH-----GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 6 ~~~~~~~~~~~-----g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
++.....|.+. +....|+.+|..+|.-++..|+.+|+.+....+.........-.++.+...+++..+...+..+
T Consensus 85 ~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 164 (429)
T cd00256 85 DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTA 164 (429)
T ss_pred chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHH
Confidence 34445555553 5778888999999999999999999999865433211111111234455566333457788889
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS 157 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~ 157 (383)
+.++..+....+.+......++++.|..+++.. +.+++.+++.|++-++-. .+........++++.++++++. ..
T Consensus 165 v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~l~~i~k~s~K 242 (429)
T cd00256 165 ARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN--PHAAEVLKRLSLIQDLSDILKESTK 242 (429)
T ss_pred HHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc--HHHHHhhccccHHHHHHHHHHhhhh
Confidence 999999999876665555677999999999853 579999999999999976 4455566667899999999987 67
Q ss_pred hhhHHHHHHHHhhhhcCCC------ccccceecCCChHHHHHhhccc-cchhHHHHHHHH-------HHHHhc-------
Q 037142 158 QSVLTQALHTVGNIARGDY------SQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWI-------ISNITA------- 216 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~-------l~nl~~------- 216 (383)
.++..-++.+|.|+..... .....+++.|+.+.+-.+-... .|+++....-.. +..++.
T Consensus 243 EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~E 322 (429)
T cd00256 243 EKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSE 322 (429)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999996432 1223345556555444333221 133333221111 111110
Q ss_pred -----------C-C----HHHHHHHHhcC--ChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 037142 217 -----------G-N----REQIQAVIDAG--LIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPL 277 (383)
Q Consensus 217 -----------~-~----~~~~~~~~~~~--~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L 277 (383)
+ + .++...+-+.+ ++..|++++. +.++.+-.-||.=|+.++..- |.....+-+.|+=..+
T Consensus 323 l~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~v 401 (429)
T cd00256 323 LRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRV 401 (429)
T ss_pred HhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHH
Confidence 0 0 12333333322 4778899985 457788888899999999873 5666666678999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 278 CDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 278 ~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
++++.++|++|+.+|+.|+..++-
T Consensus 402 M~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 402 MRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.2e-10 Score=96.86 Aligned_cols=190 Identities=19% Similarity=0.206 Sum_probs=163.5
Q ss_pred cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHH
Q 037142 112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYL 191 (383)
Q Consensus 112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l 191 (383)
+.+++-++.++.-|..++.+ -++...++..|++..++..+.+++..++..|+++|+..+.+++...+.+++.|+++.|
T Consensus 94 s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 44678888888889888886 5677788888999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 037142 192 LGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAISNATFGGTHEQIKYLE 269 (383)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~l~ 269 (383)
+..++++.+..++..|+++++.+...++.....+...+++..|.+++++ .+...+..++..+..+.... ......+.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHH
Confidence 9999987677888999999999999999999999998899999999998 57888999999999998763 33333444
Q ss_pred HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 270 REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 270 ~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
..++...+..+..+.+.++...++.++..++....
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 56777777788888888999999888877776443
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9.3e-11 Score=105.56 Aligned_cols=269 Identities=16% Similarity=0.204 Sum_probs=187.1
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
.+|.|+++.+++++.+|..|+.++..+.-..+..-..-+ ..+++.+..+- +++++++|.+.+.++..|....+.+-..
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 589999999999999999999999887754333222222 23466666666 7889999999999999999877666666
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH--hCcHHHHHHhcCCCC------------------
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE--AGVCPRLVKLLGHPS------------------ 157 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~i~~l~~~L~~~~------------------ 157 (383)
-..++++++++..++.|+++...||.+...++.. + .....+.. ..++|.|+.-+.-++
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeq-p-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-P-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-c-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 6689999999999999999999999999999987 3 22222211 135666665543211
Q ss_pred --------------------------------------hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH----hh
Q 037142 158 --------------------------------------QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG----LL 195 (383)
Q Consensus 158 --------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~----ll 195 (383)
.+++...+.+|..++. +....+++.+++ .|
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHL 402 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHc
Confidence 2233333333333321 122234444444 44
Q ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHh--cCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHcC
Q 037142 196 IDNHKTSIKNYACWIISNITAGNREQIQAVID--AGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQIKYLEREG 272 (383)
Q Consensus 196 ~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~~~ 272 (383)
.+. +..+|+.++.++|.++.|.-+ .++. ..++|.++.+|.+..+-||..+||+|+..+...- .+..+++..
T Consensus 403 ~~~-~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-- 476 (885)
T KOG2023|consen 403 SSE-EWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-- 476 (885)
T ss_pred Ccc-hhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--
Confidence 566 889999999999999976522 2222 2468899999999999999999999999876531 112223222
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++..|+..+-+++.+|++.|+.++..+-+...
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 55566666668889999999999998877544
No 44
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.27 E-value=8.8e-09 Score=88.55 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=222.8
Q ss_pred CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHH------HhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC
Q 037142 17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLV------LGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG 89 (383)
Q Consensus 17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~------~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~ 89 (383)
..+..|+.+++. ..++....++..+..+...+......+ .+.-.-...+.+| ...+.-+.+...++++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHH
Confidence 357788888887 556777777777777665543222211 1223356778888 56778888889999999987
Q ss_pred CCCCCChh-hhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-C-CChhhHHHHH
Q 037142 90 GKPRPIFD-QVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-H-PSQSVLTQAL 165 (383)
Q Consensus 90 ~~~~~~~~-~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-~-~~~~v~~~a~ 165 (383)
..+..... ...-....+...+++ .++.-...++.||..+... ++....+....++..++..+. . .+.+++...+
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 76333211 112233344445554 5677888889999999987 344444445556677777773 3 6788999999
Q ss_pred HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH------HHHHHHHhcCChHHHHHHhh
Q 037142 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR------EQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~------~~~~~~~~~~~l~~L~~ll~ 239 (383)
.+++.|+.+.. ..+.+...+.++.|..+++....+.|.+-++.++.|+....+ +....++..++.+.+-.+-.
T Consensus 222 fciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 222 FCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 99999986554 456666679999999999887789999999999999987663 44556667777766666554
Q ss_pred c--CchhHHHHHHHHH-------HHhcCC--------------CC--------HHHHHHHHHc--CChHHHHhhcCCC-C
Q 037142 240 N--AVFYIKKEAAWAI-------SNATFG--------------GT--------HEQIKYLERE--GCIKPLCDLLLCP-D 285 (383)
Q Consensus 240 ~--~~~~v~~~a~~~l-------~~l~~~--------------~~--------~~~~~~l~~~--~~i~~L~~ll~~~-~ 285 (383)
. .++++....-..- ..+++. ++ .+++..+-++ .++..|+.+|+.+ |
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND 380 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence 3 3444443322221 111111 00 2334444432 4788899999865 6
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 286 PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 286 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
|.+...|+.-+..+++..+ .....+...||-+.+.+|++|+|++|+..|..++..+..
T Consensus 381 p~iL~VAc~DIge~Vr~yP-------------~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYP-------------EGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCc-------------hHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8888889999999998644 456779999999999999999999999999998887654
No 45
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.27 E-value=9.1e-11 Score=102.57 Aligned_cols=237 Identities=19% Similarity=0.241 Sum_probs=164.1
Q ss_pred HHHHHHhC---CChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHh------cCChHHHHHHhcCCCChhHH
Q 037142 9 DKKAVVDH---GAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLG------EAALIPLLTQLNNHENLSMK 77 (383)
Q Consensus 9 ~~~~~~~~---g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~~L~~~~~~~~~ 77 (383)
.+..+++. +....++.+|+. +++++..+++..+..+..+++...+.+.. .....++++++ +.+|..++
T Consensus 44 ~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~ 122 (312)
T PF03224_consen 44 ERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQ 122 (312)
T ss_dssp ------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHH
T ss_pred HHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHH
Confidence 34445553 346677777764 68999999999999999888777766654 23678888988 67799999
Q ss_pred HHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc----cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc
Q 037142 78 RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH----SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL 153 (383)
Q Consensus 78 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L 153 (383)
..++.+++.+....+........+.++.+++.+. +++.+.+..++.++.++.+. ++....+.+.++++.+...+
T Consensus 123 ~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 123 LKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chhHHHHHhcCcHHHHHHHH
Confidence 9999999999998766655433455566665555 45567889999999999986 67777788889999999999
Q ss_pred ------CC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH-HHHHH
Q 037142 154 ------GH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE-QIQAV 225 (383)
Q Consensus 154 ------~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~-~~~~~ 225 (383)
.. .+.+++..++.++|.++...+ ....+.+.++++.+..+++....+++.+-++.++.|++...++ ....+
T Consensus 201 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m 279 (312)
T PF03224_consen 201 RKQATNSNSSGIQLQYQALLCLWLLSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM 279 (312)
T ss_dssp H---------HHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred HhhcccCCCCchhHHHHHHHHHHHHhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22 567889999999999986554 5555777889999999998877899999999999999986643 77777
Q ss_pred HhcCChHHHHHHhhc--CchhHHHHH
Q 037142 226 IDAGLIGPLVNLLQN--AVFYIKKEA 249 (383)
Q Consensus 226 ~~~~~l~~L~~ll~~--~~~~v~~~a 249 (383)
+..++++.+-.+... .|+++....
T Consensus 280 v~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 280 VLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 788888777776654 467766543
No 46
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.8e-10 Score=94.38 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=141.4
Q ss_pred ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS 85 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~ 85 (383)
+-++.+.++..|+...++.++++.+..+|..|+|+++.++..+|...+.+++.|+++.|+..+..+.+..++..|+.+++
T Consensus 113 ~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Ais 192 (342)
T KOG2160|consen 113 DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAIS 192 (342)
T ss_pred hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999977778889999999999
Q ss_pred hhcCCC-CCCChhhhhchhHHHHHhhcc--CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 037142 86 NLCGGK-PRPIFDQVRPCLPTLAQLVHS--NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162 (383)
Q Consensus 86 ~l~~~~-~~~~~~~~~~~i~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~ 162 (383)
++.++. +........++...|...+++ .+...+..++..+..+... .......+...++...+..+....+.++..
T Consensus 193 sLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e 271 (342)
T KOG2160|consen 193 SLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSLGFQRVLENLISSLDFEVNE 271 (342)
T ss_pred HHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHhhhhHHHHHHhhccchhhhH
Confidence 999998 555666667789999999998 5688999999999999977 444444555556666666667777888888
Q ss_pred HHHHHHhhhhcC
Q 037142 163 QALHTVGNIARG 174 (383)
Q Consensus 163 ~a~~~L~~l~~~ 174 (383)
.++.++..+...
T Consensus 272 ~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 272 AALTALLSLLSE 283 (342)
T ss_pred HHHHHHHHHHHH
Confidence 888777666543
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.3e-10 Score=102.90 Aligned_cols=272 Identities=19% Similarity=0.242 Sum_probs=199.1
Q ss_pred hHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142 7 LEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS 85 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~ 85 (383)
|+....+++.++||.|++-|-. +..++-++++.+|..|+... -+.+++.|++...+.+| +.....+++.|+.+..
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~Lsyl-DFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYL-DFFSIHAQRVALAIAA 319 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5567788999999999988876 89999999999999999754 34678899999999999 6778899999999999
Q ss_pred hhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC--CchHHHHHHHhCcHHHHHHhcCCCC----hh
Q 037142 86 NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG--KNDEIQAVIEAGVCPRLVKLLGHPS----QS 159 (383)
Q Consensus 86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~i~~l~~~L~~~~----~~ 159 (383)
|+|..-+......+...+|.|..+++..|....+.++-++..++.++ .++..+.++.+|++....+++.-.. ..
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 99998777777888999999999999999999999999999998764 3466677788888887777765321 11
Q ss_pred hHHHHHHHHhhhhcCCCccc------------------------------------------------------------
Q 037142 160 VLTQALHTVGNIARGDYSQT------------------------------------------------------------ 179 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~------------------------------------------------------------ 179 (383)
+..-..+.+..++.+.+...
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~ 479 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAV 479 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeeh
Confidence 11111222222222111100
Q ss_pred -----------------------------------------------------------cceec----------CCChHH
Q 037142 180 -----------------------------------------------------------LYIIN----------CGALPY 190 (383)
Q Consensus 180 -----------------------------------------------------------~~l~~----------~~~i~~ 190 (383)
..++. ..++++
T Consensus 480 ~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpV 559 (1051)
T KOG0168|consen 480 DCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPV 559 (1051)
T ss_pred hhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHH
Confidence 00000 013566
Q ss_pred HHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037142 191 LLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYL 268 (383)
Q Consensus 191 l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l 268 (383)
|+++..+.-++.||+.++.+|..++. .+.+.+..++ +.++-..+..++.+.+..+-.-|..+.--++..-..-....+
T Consensus 560 LveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F 639 (1051)
T KOG0168|consen 560 LVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSF 639 (1051)
T ss_pred HHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhH
Confidence 67777666689999999999999875 4557777777 567777888888888888777776666666655444455666
Q ss_pred HHcCChHHHHhhcC
Q 037142 269 EREGCIKPLCDLLL 282 (383)
Q Consensus 269 ~~~~~i~~L~~ll~ 282 (383)
...|++..+-++..
T Consensus 640 ~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 640 RREGVFHAVKQLSV 653 (1051)
T ss_pred hhhhHHHHHHHHhc
Confidence 67788877777765
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.19 E-value=9.6e-10 Score=94.34 Aligned_cols=240 Identities=16% Similarity=0.090 Sum_probs=183.8
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
.-+.++.+|...+.-+...+.+++..++...........-.=....|-..++++.+......++++|..+...++.+...
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 46778999999999999999999999885432211110000012334555655567888889999999999988777666
Q ss_pred hhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcC
Q 037142 98 QVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 98 ~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~ 174 (383)
...+++..++..+. ..+..++.+.+.|++-|+-+ +...+.+...+.++.+..++++ ...+|..-++.+++|++..
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn--~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN--PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC--HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67788888888773 33689999999999999987 5555666666899999999987 5678888899999999876
Q ss_pred CCcc------ccceecC---------------------------------------------------------------
Q 037142 175 DYSQ------TLYIINC--------------------------------------------------------------- 185 (383)
Q Consensus 175 ~~~~------~~~l~~~--------------------------------------------------------------- 185 (383)
.++. ...++..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 6421 1111111
Q ss_pred -------------CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHH
Q 037142 186 -------------GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA 252 (383)
Q Consensus 186 -------------~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 252 (383)
.+++.|+.+|.++.+|.+...||.-++..+...|+.+..+.+.|+=..+++++++++++||.+|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 2366777888777568888899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 037142 253 ISNATFG 259 (383)
Q Consensus 253 l~~l~~~ 259 (383)
+..+..+
T Consensus 433 vQ~lm~~ 439 (442)
T KOG2759|consen 433 VQKLMVH 439 (442)
T ss_pred HHHHHhh
Confidence 9877643
No 49
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3e-10 Score=99.96 Aligned_cols=306 Identities=14% Similarity=0.113 Sum_probs=211.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCC
Q 037142 36 QSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSND 114 (383)
Q Consensus 36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~ 114 (383)
.++.+|..++..-...|..+.+..+.+.|+++| +.|+..+...+...++|+...- +-.......+++..+.+++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 344555566665567777888889999999999 7777778888888888888765 33345556899999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC---ccccceecCC----
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY---SQTLYIINCG---- 186 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~~---- 186 (383)
..++.+..|+++.+..+ +....+ .....-++..++.+..+++..+++.++..|+|+..+.. +....+++..
T Consensus 487 daLqans~wvlrHlmyn-cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 487 DALQANSEWVLRHLMYN-CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhcchhhhhhhhhc-CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 99999999999999877 443322 23344467999999999999999999999999986433 3444444432
Q ss_pred ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcC--c---------hhHHHHHHHHHH
Q 037142 187 ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNA--V---------FYIKKEAAWAIS 254 (383)
Q Consensus 187 ~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~--~---------~~v~~~a~~~l~ 254 (383)
+.+.+.+.+... +|-.....++.+.++++.++.....++ +..++..+..+|... . ..+-.--..+..
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 445566666677 777888889999999998877666666 566777777766421 1 111111223333
Q ss_pred HhcCCCCHHHHHHHHHcCCh--HHHHhhcC---CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccH
Q 037142 255 NATFGGTHEQIKYLEREGCI--KPLCDLLL---CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGL 329 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i--~~L~~ll~---~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (383)
++..+. +.... +.. |++=..=+ .++.++-....|.+.|+.......+. ..+....++.+.+.|.-
T Consensus 645 ~l~e~~--d~f~r----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~v----tratveR~~iL~~~G~~ 714 (743)
T COG5369 645 NLSENS--DKFKR----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEV----TRATVERIQILCANGIR 714 (743)
T ss_pred cccccc--ccccc----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCcc----chhhHHHHHHHHHccHH
Confidence 443321 11111 111 22221111 23446777788888776554333322 23455778899999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 330 EKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 330 ~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
+-++.++.+.+..|++++-.+|..+
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.1e-08 Score=90.59 Aligned_cols=333 Identities=16% Similarity=0.165 Sum_probs=240.1
Q ss_pred ChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCC---
Q 037142 18 AVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKP--- 92 (383)
Q Consensus 18 ~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~--- 92 (383)
.|+.|+.-+.+ .-.+=|..|++.|..++. ++|..+...| .+++++.|+.+ .|+++...++.++.++..+..
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 47778777765 456779999999999984 7888887666 78999999755 489999999999999987662
Q ss_pred ---CCC------------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH-HhCcHHHHHHhcCCC
Q 037142 93 ---RPI------------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPRLVKLLGHP 156 (383)
Q Consensus 93 ---~~~------------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~i~~l~~~L~~~ 156 (383)
... +....+.+..++..+...|..+|..++..+..+....+.+....+. ...++..++.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 111 0112578888999999999999999999999998873444444433 345789999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142 157 SQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDAGLIGP 233 (383)
Q Consensus 157 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~ 233 (383)
..-++..++..|..++..++...+.+.=.+++..|.+++.... ..-|...|+..+.|+...+..+...+.+.+.+|.
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 8899999999999999888866665555688999999997532 3468889999999999988788888889999999
Q ss_pred HHHHhhc---Cch--------hH--HHHHHHHHHHhcCCCC-----HHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHH
Q 037142 234 LVNLLQN---AVF--------YI--KKEAAWAISNATFGGT-----HEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCL 293 (383)
Q Consensus 234 L~~ll~~---~~~--------~v--~~~a~~~l~~l~~~~~-----~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al 293 (383)
|..++.- ++. ++ ...+..++..+...++ ....+.+.+.+++..|+.++-++ ..+++..++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 9988863 221 11 1345556666665442 22334566789999999988776 458888899
Q ss_pred HHHHHHHHhchhcccCcCC---CCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 037142 294 KALENILKVGEAEKNTDTD---IGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 294 ~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
-++.++++.+...|..|.+ .+..++.- ..+-.+..+.++ .....+-.+...+..|+.+.++
T Consensus 339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~------sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 339 ITVAEVVRGNARNQDEFADVTAPSIPNPRP------SIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred HHHHHHHHhchHHHHHHhhccCCCCCCCcc------chhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 9999999887776654331 01111000 011122334333 3445666667777777766553
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=99.15 E-value=3.4e-08 Score=94.55 Aligned_cols=219 Identities=17% Similarity=0.117 Sum_probs=152.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+++.|.+=+.++++.+|-.|++.++.+-. ++..+.+ ++.+.+.+ .+.++.+|+.|+.++.++....|. ..
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l-----~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pe--lv 175 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYT-----LEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ--LF 175 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHH-----HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc--cc
Confidence 46777888888999999999999998763 3433333 46677888 688999999999999999876543 23
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
...+.++.+.+++.+.++.+..+|+.+|..+... .+..... ..+.+..++..+.+-++..+...+.+|......++.
T Consensus 176 ~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~-~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~ 252 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY-GSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE 252 (746)
T ss_pred cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh-CchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH
Confidence 3457888999999999999999999999999876 4433332 234567788888777788888888888654322211
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
. . ..++..+.+.+++. ++.|...|++++.++.... ++...... ..+-+.++.+ .++++++|.-+...|.-+
T Consensus 253 e---~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 253 S---A--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHAL 324 (746)
T ss_pred H---H--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHH
Confidence 1 1 25677888888898 9999999999999887542 23222221 1122344444 334556666665555444
Q ss_pred c
Q 037142 257 T 257 (383)
Q Consensus 257 ~ 257 (383)
+
T Consensus 325 ~ 325 (746)
T PTZ00429 325 L 325 (746)
T ss_pred H
Confidence 4
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.10 E-value=1.1e-08 Score=89.52 Aligned_cols=221 Identities=18% Similarity=0.226 Sum_probs=162.3
Q ss_pred cCCHHHHHHHHHHHHHhccCCCchHHHHHHH------hCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC
Q 037142 112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIE------AGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185 (383)
Q Consensus 112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~------~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 185 (383)
+.+.++.++++..+..+... .+...+.+.. ...+..++.++.++|..+...++..+..+....+....... .
T Consensus 68 ~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~ 145 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K 145 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H
T ss_pred cCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H
Confidence 46889999999999999987 5555555544 12578888899999999999999999999877664433211 2
Q ss_pred CChHHHHHhhcc----ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh------h-cCchhHHHHHHHHHH
Q 037142 186 GALPYLLGLLID----NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL------Q-NAVFYIKKEAAWAIS 254 (383)
Q Consensus 186 ~~i~~l~~ll~~----~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll------~-~~~~~v~~~a~~~l~ 254 (383)
+.++.++..+.+ + +..++..++.+++++.. .+..+..+.+.++++.+.+++ . ....++..+++.++.
T Consensus 146 ~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 456666666654 4 56778899999999975 458899999999999999999 2 247889999999999
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHH
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIE 333 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~ 333 (383)
-++.. ++....+.+.++++.|.++++. ...++...++.++.|++..... .+...+..+|+.+.+.
T Consensus 224 lLSF~--~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~------------~~~~~mv~~~~l~~l~ 289 (312)
T PF03224_consen 224 LLSFE--PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK------------SNIELMVLCGLLKTLQ 289 (312)
T ss_dssp HHTTS--HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST------------THHHHHHHH-HHHHHH
T ss_pred HHhcC--HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH------------HHHHHHHHccHHHHHH
Confidence 99986 7888888888899999999984 5678999999999999975442 2566677899999999
Q ss_pred HHhcC--CCHHHHHHHHHH
Q 037142 334 NLQRH--DNYEIHEKSAKI 350 (383)
Q Consensus 334 ~l~~~--~~~~v~~~a~~~ 350 (383)
.|... .|+++.+--..+
T Consensus 290 ~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 290 NLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHSS--SSHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 88765 577776544433
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.4e-07 Score=85.75 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=212.8
Q ss_pred hHHHHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCh----------------HHHHHHH-hcCChHHHHHH
Q 037142 7 LEDKKAVVDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESP----------------RFRDLVL-GEAALIPLLTQ 67 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~----------------~~~~~~~-~~g~i~~L~~~ 67 (383)
.++|..+.-+ +++.|++.|.. .|+++...++.++.++...++ ...+.++ ..+.|..++..
T Consensus 52 rkYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~ 130 (970)
T KOG0946|consen 52 RKYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS 130 (970)
T ss_pred HHHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHH
Confidence 3455555544 57888888875 889999999999999875431 1222333 45778888999
Q ss_pred hcCCCChhHHHHHHHHHHhhcCCCCCCChh---hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC
Q 037142 68 LNNHENLSMKRIATWTLSNLCGGKPRPIFD---QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG 144 (383)
Q Consensus 68 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 144 (383)
+ ...|-.+|..++..+.++.+..|..... ....++..+..++.+....+|..++..|..+.+. ++.-.+.+.-..
T Consensus 131 ~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~-n~~IQKlVAFEN 208 (970)
T KOG0946|consen 131 L-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD-NSSIQKLVAFEN 208 (970)
T ss_pred H-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc-CchHHHHHHHHH
Confidence 8 6778999999999999998876544222 2277899999999999999999999999999998 443333444456
Q ss_pred cHHHHHHhcCC----CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc--ch--------h--HHHHHH
Q 037142 145 VCPRLVKLLGH----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH--KT--------S--IKNYAC 208 (383)
Q Consensus 145 ~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~--~~--------~--~~~~a~ 208 (383)
++..|+.++.. +..-|...|+..|.||..++..+.+.+.+.+.++.|..+|.... +. + -...++
T Consensus 209 aFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~L 288 (970)
T KOG0946|consen 209 AFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEAL 288 (970)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHH
Confidence 89999999976 23467889999999999998888888889999999997775321 21 1 123466
Q ss_pred HHHHHHhcC-CH-----HHHHHHHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCCCHHHHHHHHHcC--------
Q 037142 209 WIISNITAG-NR-----EQIQAVIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGGTHEQIKYLEREG-------- 272 (383)
Q Consensus 209 ~~l~nl~~~-~~-----~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~-------- 272 (383)
.+++.++.. +. .....+...+++..|..++.++ ..+|+.++..+++++.+.+ ......+.+..
T Consensus 289 qivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 289 QIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN-ARNQDEFADVTAPSIPNPR 367 (970)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCc
Confidence 666666642 21 2223455788999999998776 6789999999999999874 34444444321
Q ss_pred --ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcc
Q 037142 273 --CIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEK 307 (383)
Q Consensus 273 --~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~ 307 (383)
++-.++.+..+. .+..|..+++++..++-....-+
T Consensus 368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 122244444444 56788888899888876555433
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=5.2e-08 Score=89.65 Aligned_cols=281 Identities=14% Similarity=0.111 Sum_probs=185.6
Q ss_pred ChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 18 AVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL-IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 18 ~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i-~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
++..+++-... ++..+|..|..+|.|-......+-..=.+.+++ +..++.- ++++.+++..|+.+|..+..-....
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~~ 251 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYEF 251 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 667888888888887552111111111123332 3334444 7889999999999999988654222
Q ss_pred C-hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH---HHHHH---------------hCcHHHHHHhcCC
Q 037142 95 I-FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI---QAVIE---------------AGVCPRLVKLLGH 155 (383)
Q Consensus 95 ~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~---------------~~~i~~l~~~L~~ 155 (383)
- .-....++..-+.-++++++++..+++..-+++|.. .-+.. ....+ .+++|.|+++|.+
T Consensus 252 m~~yM~~alfaitl~amks~~deValQaiEFWsticeE-EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 252 MEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE-EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 1 112244666666777889999999999888888854 11100 01111 1467788888843
Q ss_pred -------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 037142 156 -------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228 (383)
Q Consensus 156 -------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~ 228 (383)
++++...+|-.||.-++....+. ++. .+++.+-.-++++ +..-|..+..+++.+..+....+..-+-.
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~ 405 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVI 405 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHh
Confidence 45677778888888777554432 222 3444444556677 89999999999999999887777777788
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 306 (383)
+.+|.++.++.+++..+|..+.|+++.++................++.++.-+ ...|.+-.+++|++.++++.....
T Consensus 406 qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 406 QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999774322222222233455555555 356788999999999999765543
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=7.6e-08 Score=89.13 Aligned_cols=277 Identities=15% Similarity=0.181 Sum_probs=189.1
Q ss_pred HHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142 23 VKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC 102 (383)
Q Consensus 23 ~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 102 (383)
.+=|++.+.-++-.|+.+|++++. ++... ...|.+-+++ ++.++.+++.|+.+...+.+..| ...+.+
T Consensus 113 knDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll-~~~~~~irKKA~Lca~r~irK~P----~l~e~f 180 (866)
T KOG1062|consen 113 KNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLL-QHRDPYIRKKAALCAVRFIRKVP----DLVEHF 180 (866)
T ss_pred HhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCc----hHHHHh
Confidence 333456777888899999999985 34333 3357778888 67899999999999999998765 345678
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---------------CChhhHHHHHHH
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---------------PSQSVLTQALHT 167 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---------------~~~~v~~~a~~~ 167 (383)
++...+++.+.+..+....+..+..+|.. .++....+.+ +++.++..|+. ++|-++..+++.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 88888899988888888888888888887 6666666655 56666666641 577888888888
Q ss_pred HhhhhcCCCccccceec--------------CC---ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---
Q 037142 168 VGNIARGDYSQTLYIIN--------------CG---ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID--- 227 (383)
Q Consensus 168 L~~l~~~~~~~~~~l~~--------------~~---~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~--- 227 (383)
|+.|-.++++..+.+-+ .| ..+.+..++.=..+..+|.-|+.+|+.+..+.+.+..++.=
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L 337 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNML 337 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhH
Confidence 88887776654321110 00 01111111111114566666666666665554433332211
Q ss_pred -------cCC----hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142 228 -------AGL----IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296 (383)
Q Consensus 228 -------~~~----l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l 296 (383)
..+ =..+++++++++..+|+.|......+... .++.. .++-|++.|...+++.+..+...+
T Consensus 338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~---~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I 409 (866)
T KOG1062|consen 338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE---SNVRV-----MVKELLEFLESSDEDFKADIASKI 409 (866)
T ss_pred HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc---ccHHH-----HHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 12578899999999999999999888854 44555 366788888888999999888888
Q ss_pred HHHHHhchhcccCcCCCCcccHHHHHHHHhc
Q 037142 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAK 327 (383)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (383)
..+++....++ .+..+.+.++|...|
T Consensus 410 ~~laEkfaP~k-----~W~idtml~Vl~~aG 435 (866)
T KOG1062|consen 410 AELAEKFAPDK-----RWHIDTMLKVLKTAG 435 (866)
T ss_pred HHHHHhcCCcc-----hhHHHHHHHHHHhcc
Confidence 88887665543 455677777777776
No 56
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.8e-07 Score=85.64 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=174.3
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
..+++.+-+..++.+..+-+|..|+..++.++.. .++..+. .+|.|.+-|.++|+.|+.+|...++.|+..++.
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLk-YPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLK-YPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 3456778888999999999999999999999987 4544443 579999999999999999999999999988885
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-chhHHHHHHHHHH--
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-VFYIKKEAAWAIS-- 254 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~-- 254 (383)
..- .+.|.+.+++.+..+..+....+..+++|+.-.|.... .+++++-+++++. -..+-.+++.++.
T Consensus 215 nyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 215 NYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred ccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 433 45788999998776899999999999999987766554 4677899999875 4556666666653
Q ss_pred HhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHH
Q 037142 255 NATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKI 332 (383)
Q Consensus 255 ~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L 332 (383)
++.... ...-++. ++..|--++.+.|+.++..++-++..++...++. +... .+.+
T Consensus 285 s~s~g~~d~~asiqL-----CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----------------Vqa~--kdlI 341 (877)
T KOG1059|consen 285 SMSSGMSDHSASIQL-----CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----------------VQAH--KDLI 341 (877)
T ss_pred hhccCCCCcHHHHHH-----HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----------------HHHh--HHHH
Confidence 333332 2223333 5778888899999999999999999999765542 1111 3567
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 333 ENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 333 ~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.+++.+.++.|+-+|++++..+...++
T Consensus 342 lrcL~DkD~SIRlrALdLl~gmVskkN 368 (877)
T KOG1059|consen 342 LRCLDDKDESIRLRALDLLYGMVSKKN 368 (877)
T ss_pred HHHhccCCchhHHHHHHHHHHHhhhhh
Confidence 789999999999999999998887776
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.7e-08 Score=88.54 Aligned_cols=285 Identities=17% Similarity=0.244 Sum_probs=189.2
Q ss_pred HhCCChHHHHHh----hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC
Q 037142 14 VDHGAVPIFVKL----LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG 89 (383)
Q Consensus 14 ~~~g~i~~L~~l----L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~ 89 (383)
+...+++..+.+ ++++|+.-++.|+.+++.+..+....+..-+..++++.++.++ .++...++..+.|+++.++.
T Consensus 357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHh
Confidence 334555555444 5568999999999999999987777776666788899999999 58888889999999999998
Q ss_pred CCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCch----H-----HHHHHHhCcHHHHHHhcCC---
Q 037142 90 GKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND----E-----IQAVIEAGVCPRLVKLLGH--- 155 (383)
Q Consensus 90 ~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~----~-----~~~~~~~~~i~~l~~~L~~--- 155 (383)
..+.. ......+.++.++.-+. +.|.+..++||++.+|+.. ..+ + ...+++. ++..|++.-..
T Consensus 436 ~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea-~~eA~~s~~qt~~~t~~y~~-ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 436 FLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA-AYEAAVSNGQTDPATPFYEA-IIGSLLKVTDRADG 512 (859)
T ss_pred hchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH-HHHhccCCCCCCccchhHHH-HHHHHHhhcccccc
Confidence 87533 22333455555555444 4578999999999999954 111 1 1112221 33333333332
Q ss_pred CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH---------hhccc---cchhHHHHHHHHHHHHhcCCHHHHH
Q 037142 156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG---------LLIDN---HKTSIKNYACWIISNITAGNREQIQ 223 (383)
Q Consensus 156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~---------ll~~~---~~~~~~~~a~~~l~nl~~~~~~~~~ 223 (383)
.+.+.|..+..+|..+..+.++..-..+. ++...++. .++.. +-..++..-+.+|..+.+..+..+.
T Consensus 513 nqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~ 591 (859)
T KOG1241|consen 513 NQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIR 591 (859)
T ss_pred chhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 45789999999999999877654332221 22222222 22111 0234556666777766653322222
Q ss_pred HHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc-CCCCHHHHHHHHHHHHHHHH
Q 037142 224 AVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL-LCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 224 ~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~~l~~l~~ 301 (383)
... ..++..+++++.+ .+..+..+|..+++.++..-+....+++-. +.|.|..-| ...+..|...+......+++
T Consensus 592 ~~~-d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n~~e~qVc~~aVglVgdl~r 668 (859)
T KOG1241|consen 592 EVS-DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSNFQEYQVCAAAVGLVGDLAR 668 (859)
T ss_pred hHH-HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 222 2356677778877 466788999999999988766677777655 788888888 45678899999999888887
Q ss_pred hchhc
Q 037142 302 VGEAE 306 (383)
Q Consensus 302 ~~~~~ 306 (383)
.-+.+
T Consensus 669 aL~~~ 673 (859)
T KOG1241|consen 669 ALEDD 673 (859)
T ss_pred HHHhh
Confidence 65543
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.90 E-value=1.9e-07 Score=81.59 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=190.5
Q ss_pred HHHHHHhCCChHHHHHhhCCCCh--HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 9 DKKAVVDHGAVPIFVKLLASPSD--DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 9 ~~~~~~~~g~i~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
.+..+...|.+..|++++.+++. .++.+|.+.|..+.. .++++.+.+.| +..++.+-+....++..+..+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 45667778999999999998664 559999999998874 47888888877 56666666556678999999999999
Q ss_pred hcCCCCC-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 037142 87 LCGGKPR-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL 165 (383)
Q Consensus 87 l~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~ 165 (383)
+..++.. .......+++..++.-.+..++.+.++++.+|.|++.+......+.+++..+.+.|+.+-.+.|+-.+..||
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999843 445556899999999999999999999999999999763455666788887888888888888888999999
Q ss_pred HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhH
Q 037142 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI 245 (383)
Q Consensus 166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 245 (383)
-+.+.++.+.+.. ..+.+.|.+..+-.++.+- ++..... --...+.+. ....++.|+.++++...+.
T Consensus 329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~-DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASL-DPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEA 395 (832)
T ss_pred HHHhhhhhhhhhh-HHHhhccchhhhhhhhhcc-Ccchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhh
Confidence 9999998765532 3355566665555555544 3321111 111122221 1234677888888766665
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 037142 246 KKEAAWAISNATFGGTHEQ-IKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN 298 (383)
Q Consensus 246 ~~~a~~~l~~l~~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~ 298 (383)
+--+++-++.=+...+... .+.+-+-|.++.|-++..+++.---.-|-.+|.-
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtv 449 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTV 449 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 5555554444333222222 2333456889999998887665433445555543
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.9e-06 Score=71.54 Aligned_cols=274 Identities=14% Similarity=0.182 Sum_probs=180.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 141 (383)
..++.++ .++++.++..|+..+..+.......-.......++.+.+++...++ .+.++.++.|++.. ..-.+.+.
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~--~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK--EELRKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh--HHHHHHHH
Confidence 4578888 7888999999999998888772222223336688889999998777 78899999999976 44445555
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccccee------cCCChHHHHHhhccccch-hHHHHHHHHHHHH
Q 037142 142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYII------NCGALPYLLGLLIDNHKT-SIKNYACWIISNI 214 (383)
Q Consensus 142 ~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~------~~~~i~~l~~ll~~~~~~-~~~~~a~~~l~nl 214 (383)
.. ++..++..+.++.......++..+.|++...+.....+. +.|.++....+...+.+. .-......++.|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 55 788888888888777888899999999976654322211 134555555555443121 2234456677788
Q ss_pred hcCCHHHHHHHHhcCCh--HHHHHHhhcCchhHHHH-HHHHHHHhcCCCCHHHHHHHHH--cCChHHH------------
Q 037142 215 TAGNREQIQAVIDAGLI--GPLVNLLQNAVFYIKKE-AAWAISNATFGGTHEQIKYLER--EGCIKPL------------ 277 (383)
Q Consensus 215 ~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~l~~--~~~i~~L------------ 277 (383)
+... ..+..+.+...+ ..+..+ .+.+..+|+. .+.+|-|+|... .....++. .++++.+
T Consensus 160 s~~~-~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 160 SQFE-AGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred hhhh-hhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 6654 556565544422 222222 2345566654 477788877552 22222222 1222222
Q ss_pred ---------HhhcC-----CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH-hcCCCHH
Q 037142 278 ---------CDLLL-----CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL-QRHDNYE 342 (383)
Q Consensus 278 ---------~~ll~-----~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l-~~~~~~~ 342 (383)
++.+. .+++.+++.-+.+|..++.. ..-++.++.-|+.+.+.++ ...++++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--------------~~GRe~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--------------RAGREVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--------------hHhHHHHHhcCchHHHHHHhcCCCcHH
Confidence 13332 34678999999999988863 3356779999999999888 5568899
Q ss_pred HHHHHHHHHHHhcCCCC
Q 037142 343 IHEKSAKILETYWCGRV 359 (383)
Q Consensus 343 v~~~a~~~l~~~~~~~~ 359 (383)
+++.|..+.+-+..++.
T Consensus 302 ~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 302 IREACEQVVQMLVRLEP 318 (353)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999998888877443
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.87 E-value=2.2e-07 Score=81.19 Aligned_cols=246 Identities=11% Similarity=0.118 Sum_probs=177.2
Q ss_pred hhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcC
Q 037142 98 QVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~ 174 (383)
...+++..|++++..++ ..++..+...|..+... ++...+...| ...++.+-+. +.++.....+..|.++-.+
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 34678899999999776 45688999999888754 5666666655 4566665554 5567888899999999999
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
+++..+.++..|+++.++...... ++.+.+.+.-+|+|++. +.......+++..+-+.|+.+..+.+.-.|..||.++
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 998999999999999999999988 89999999999999986 4456777788888888999998888999999999999
Q ss_pred HHhcCCCCHHHHHHHHHcC---ChHHHHhhcCCC--------------------------CHHHHHHHHHHHHHHHHhch
Q 037142 254 SNATFGGTHEQIKYLEREG---CIKPLCDLLLCP--------------------------DPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 254 ~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~--------------------------~~~v~~~al~~l~~l~~~~~ 304 (383)
+.++.+ .+.-..+...| ++++++..++-. +...-.+++.++.-.++...
T Consensus 332 ~vlat~--KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI 409 (832)
T KOG3678|consen 332 AVLATN--KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI 409 (832)
T ss_pred hhhhhh--hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH
Confidence 999976 34434333344 334444433210 00111224444444444332
Q ss_pred hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
+. ...-.+.|.+.|.++.|.++..+++.--...|..+|. ..+++-.
T Consensus 410 Ks---------~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt-viGEEVP 455 (832)
T KOG3678|consen 410 KS---------LQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT-VIGEEVP 455 (832)
T ss_pred HH---------hccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HhccccC
Confidence 21 1113567899999999999999998877777777776 3344333
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5e-07 Score=83.89 Aligned_cols=217 Identities=15% Similarity=0.180 Sum_probs=147.2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL 149 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l 149 (383)
++.+.-++..|+.+|++++.. +....+.|-+.+++++.++-+++.|+.|...+.+. .++..+. +++..
T Consensus 117 ~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~-----f~~~~ 184 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEH-----FVIAF 184 (866)
T ss_pred cCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHH-----hhHHH
Confidence 456778888999999999875 45577889999999999999999999999999987 5544443 57788
Q ss_pred HHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc--------------ccchhHHHHHHHHHHHHh
Q 037142 150 VKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID--------------NHKTSIKNYACWIISNIT 215 (383)
Q Consensus 150 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~--------------~~~~~~~~~a~~~l~nl~ 215 (383)
..+|.+.+..|....+..+..+|..+++....+-+ .++-++..|++ -.+|.++...++.|+-+.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 88999999999999999999999877655554443 45555555532 117889999999999998
Q ss_pred cCCHHHHHHHHh------------cC-C----hHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC-----
Q 037142 216 AGNREQIQAVID------------AG-L----IGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREG----- 272 (383)
Q Consensus 216 ~~~~~~~~~~~~------------~~-~----l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~----- 272 (383)
.++++..+.+-+ .+ + .+.+..++. .++..+|..|+-+|+.+..+.+ .+++++.=+.
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d-~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD-NNIRYVALNMLLRVV 341 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc-cceeeeehhhHHhhh
Confidence 876554443321 00 1 112222222 2456677777777777766532 3333221000
Q ss_pred ---------ChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 273 ---------CIKPLCDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 273 ---------~i~~L~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
=-..++++++++|..++..|+..+..++.
T Consensus 342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 12346667777777777777777776664
No 62
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.84 E-value=5.2e-07 Score=83.08 Aligned_cols=243 Identities=14% Similarity=0.067 Sum_probs=161.1
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc-hHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
.....++..++..|+++.+.++.+++..+..++.-... ..-+.+...| -.|.+.|..+.+++.-..+.++..++..-
T Consensus 795 pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 795 PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 34456777888899999999999999999888854101 1111222223 35788899999999999999988887433
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
.-....---.+++|.|..+|++. +..++.+++..++.++...++..-.--=..+--.|+++|...+..+|+.|..+++.
T Consensus 873 gm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred cccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 21111112248899999999999 99999999999999997665421100001123346777788899999999999998
Q ss_pred hcCCCCHHH-HHHHHH-----------------------c---CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhccc
Q 037142 256 ATFGGTHEQ-IKYLER-----------------------E---GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKN 308 (383)
Q Consensus 256 l~~~~~~~~-~~~l~~-----------------------~---~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~ 308 (383)
++...++.. ...+++ + .++|.|++-...++..||.-.+.+++.++++.....+
T Consensus 952 IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 952 IAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred HHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 876544332 222211 1 2566666666677888999999999999987665543
Q ss_pred CcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 309 TDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
.+ +. ...+.|++-+-+.+.--++.|..++..+.-
T Consensus 1032 dY--------iy------av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1032 DY--------IY------AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hH--------HH------HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 21 11 123555555555555556666666655543
No 63
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.8e-06 Score=78.38 Aligned_cols=316 Identities=16% Similarity=0.115 Sum_probs=198.6
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+++.|..-++.+++.+|.....+|..+........ ...+.+.+.+++ +..+..-+..+.+.++.+..+. .....
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll-~~~~~~~~~~aa~~~ag~v~g~-~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELL-TSTKIAERAGAAYGLAGLVNGL-GIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHh-ccccHHHHhhhhHHHHHHHcCc-HHhhh
Confidence 46677777778889999999888876653211110 112356677888 4677788888999999888775 22334
Q ss_pred hhhchhHHHHHhhccCCHHHHHH-HHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSN-ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
...+++..+.+.+.+......+. +..+....+..-....-..+. .++|.++....+..+.++.++..+...+...-+
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 44778888888888776544443 333333322220111111122 256777888888888999998888877765433
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
...- .-+++.++.-+... ....+..++..++.++...+..... .-..++|.+.+.|.+..+++|+.+..++.++
T Consensus 249 ~~aV----K~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 249 AYAV----KLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred cchh----hHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 2111 12455555555555 6788899999999988776555443 3467999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHcC----------------------------------ChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 257 TFGGTHEQIKYLEREG----------------------------------CIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 257 ~~~~~~~~~~~l~~~~----------------------------------~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
+...+...++.++... ++|.|.+-+...+..++..++..+.|++.-
T Consensus 323 ~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 323 GSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred HHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 8765444455421100 222233333334445556666666666654
Q ss_pred chhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 303 GEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
-+..+. ..+|...+ ++.+......+.++++..+..+|........
T Consensus 403 veDp~~-------lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 403 VEDPKD-------LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hcCHHH-------HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 422211 12222222 5777777788899999988888855544443
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.3e-06 Score=80.29 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=168.3
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
-+.++.+| ++..+-++..|+.++..++...| ......+|.|..-|.++|+.++..|..+++.|++. ++.++-.
T Consensus 146 a~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK-nPknyL~- 218 (877)
T KOG1059|consen 146 ADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK-NPQNYLQ- 218 (877)
T ss_pred HHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh-CCccccc-
Confidence 45677888 67788999999999999987654 34577899999999999999999999999999998 6555443
Q ss_pred HHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHH--HHHhcC
Q 037142 141 IEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWII--SNITAG 217 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l--~nl~~~ 217 (383)
+.|.+.++|.+ +|..+....+..+++|+.-.+.. ...+++++..++.++.-..+..+++.++ +++..+
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh-----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 46888888866 67789999999999998666632 2367889999998875567777777665 344444
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297 (383)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~ 297 (383)
.++....+ .-.+..|-.++.+.++.+|.-++.+++.++... +...+. --..++.+|.+.|+.++..|+..+.
T Consensus 290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-PKAVQA-----HKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-HHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence 32222221 114667788888999999999999999998653 333333 3567889999999999999999999
Q ss_pred HHHHhc
Q 037142 298 NILKVG 303 (383)
Q Consensus 298 ~l~~~~ 303 (383)
-++...
T Consensus 362 gmVskk 367 (877)
T KOG1059|consen 362 GMVSKK 367 (877)
T ss_pred HHhhhh
Confidence 888643
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=6.7e-07 Score=82.95 Aligned_cols=263 Identities=19% Similarity=0.152 Sum_probs=192.8
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
.++-++++....|-+++..+---+.+.+...|.... +++..++.-. .++++.++..|++..+.+-.+ .
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~-~d~np~iR~lAlrtm~~l~v~------~ 117 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDC-EDPNPLIRALALRTMGCLRVD------K 117 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccC-CCCCHHHHHHHhhceeeEeeh------H
Confidence 456666667777778888887888888876655332 3455566665 677899999988887776654 3
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
....++..+.++++++++.++..+..+..++-.. ..+.+.+.|+++.|..++.++++.|..+|+.+|..+....++
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~----~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI----DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC----ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 5567888999999999999999999999988865 346667789999999999999999999999999999877664
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
..-..+....+..++..+... ++.-+...+.++.+....++...+. ++..+...+.+.+..+...+..++.++.
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCcccccHHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 222233334556666666555 6666777777777766655433333 4557777888888888888888888887
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
... ..........+-++|+.++.... +++..++.=+.-++...+.
T Consensus 268 ~~~--~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 268 KYL--KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHH--HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH
Confidence 652 23444445568888999888777 8888888777777766553
No 66
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.71 E-value=1e-06 Score=81.27 Aligned_cols=263 Identities=16% Similarity=0.103 Sum_probs=171.7
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHH--HHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCC
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRF--RDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRP 94 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~ 94 (383)
++...+..|++.++.+|.+|+..++.++.--..+ -+.+-..|+ .|...| ....+++.-..+.++..++... ...
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhccccc
Confidence 3556667788899999999999999887321111 122333453 367777 5667788777777666665433 222
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh-CcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA-GVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~ 173 (383)
..--+.+++|.|...|++....++++++..++.++.. .++.+.. .+. .+-=.|+++|+..+.+++.++..+++.++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v~a-REWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYVSA-REWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3334688999999999999999999999999999987 4432211 110 122356788888899999999999999974
Q ss_pred CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
.-. -..++..|+.-|+.. +...|.....+++-.+..+.. ..++|.|+.=...++..|+.-...++
T Consensus 955 aIG-------PqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 955 AIG-------PQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred hcC-------HHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHH
Confidence 321 113455555555444 333333333333333322211 23566666666678888999888888
Q ss_pred HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
+.+-.........++.. +.|.|-+.|.+.|.--+..|..++..+.-.
T Consensus 1020 sf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 88876644444555544 788888888888887777777777666644
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.2e-05 Score=73.27 Aligned_cols=277 Identities=17% Similarity=0.144 Sum_probs=183.0
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHH-HHHHHHHhhcCCCCCCCh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR-IATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~-~a~~~L~~l~~~~~~~~~ 96 (383)
..+.+.++++..+..-+..+.+.+..+..+. ....+.+.+++..+...+. +.+....+ .++.+....+..-.....
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~-dk~~~~~re~~~~a~~~~~~~Lg~~~E 211 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAII-DKKSALNREAALLAFEAAQGNLGPPFE 211 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhc-ccchhhcHHHHHHHHHHHHHhcCCCCC
Confidence 4556667777766777788888888777553 3445556788888888884 44333333 233333333333222223
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
......+|.++..+.+..+.+|..+..+...+-+..+....+. ++|.++.-+.+..++....++..++.++...+
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 3445677777777778888999888888877765522223333 45666666655688889999999999988777
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc--CCHHHHHHHHh--------c------------------
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA--GNREQIQAVID--------A------------------ 228 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--~~~~~~~~~~~--------~------------------ 228 (383)
.... ..-..++|.+.+.|.++ ++.+|+.+..++..++. .+++ ++.++. .
T Consensus 287 ~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 287 KQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred HHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 5554 34457899999999999 99999999999988764 2222 222211 0
Q ss_pred ----CChHHHHHHhhc----CchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037142 229 ----GLIGPLVNLLQN----AVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299 (383)
Q Consensus 229 ----~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l 299 (383)
--+..++.+++. .+..+++.++..+.|++.-- ++.....++. .++|-|-..+.+..|++|..+.++|+.+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 113344445443 46788899999999998754 3444433332 2677777777778899999999999988
Q ss_pred HHhchhc
Q 037142 300 LKVGEAE 306 (383)
Q Consensus 300 ~~~~~~~ 306 (383)
.+..+..
T Consensus 443 ~e~~g~~ 449 (569)
T KOG1242|consen 443 LERLGEV 449 (569)
T ss_pred HHHHHhh
Confidence 8865544
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.68 E-value=1.1e-06 Score=79.32 Aligned_cols=265 Identities=16% Similarity=0.150 Sum_probs=175.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcC---ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CC
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAE---SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PR 93 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~ 93 (383)
++...+++|.+..+.+|.+|+...+.++.- ..+ .+.+...|. .|.+-| ....+++....+.++..+.... -.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 567788899999999999999988887631 111 123333453 356666 4556777777777776665543 22
Q ss_pred CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh-CcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA-GVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
.-+.-+.+++|.|...+++....+..+.+..+..+|.. .++.+.. .+. .+-=.|+..|++.+.+++.+|..+++.++
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~-~peyi~~-rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMN-SPEYIGV-REWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc-CcccCCH-HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 23345689999999999999999999999999999987 4442211 110 12235778888899999999999999987
Q ss_pred cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHH
Q 037142 173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA 252 (383)
Q Consensus 173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 252 (383)
..-. -..++..|+.-|+.. +...|.....+++-.+..+. -..++|.|+.=...++..++.-...+
T Consensus 759 ~aiG-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 759 RAIG-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred hhcC-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHH
Confidence 4322 123455566655544 33333333334443332221 12356666665566788899888888
Q ss_pred HHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 253 ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 253 l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
++.+-.........++.. +.|.|-+.+.+.|+--+..|...+..+.-.+..
T Consensus 824 m~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 824 MCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 888876644444555544 678888889888887787787777777765543
No 69
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.67 E-value=5.4e-08 Score=56.72 Aligned_cols=41 Identities=44% Similarity=0.866 Sum_probs=39.1
Q ss_pred ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA 46 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~ 46 (383)
+++++..+++.|++|.|+++|++++++++..|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999973
No 70
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.66 E-value=6.9e-06 Score=74.43 Aligned_cols=240 Identities=15% Similarity=0.077 Sum_probs=159.6
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
..++..++++++++.+.++.+++.....++.-- .-.....+...| -.|.+.|..+.+++.-..+.+++.+.....-.
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 567778889999999999999998888776430 011122333333 35788888999999999999998887543322
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
..+---.|++|.+.++|.+. +..+..+.+..++.++..+++..-.--=..+--.|++.|.+.+.++|+.|..+++.++.
T Consensus 681 ~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 22222348999999999999 99999999999999998766522110001123357777888899999999999988876
Q ss_pred CCCHHHH-HHHH----------------------H-c---CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcC
Q 037142 259 GGTHEQI-KYLE----------------------R-E---GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDT 311 (383)
Q Consensus 259 ~~~~~~~-~~l~----------------------~-~---~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 311 (383)
..++... ..++ + . .++|.|+.-...++..+|.-.+++++.++++..+....+
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY- 838 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY- 838 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH-
Confidence 5443322 2111 1 1 256666666667778899999999999998766543221
Q ss_pred CCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
+.. ..+.|++-+.+.++--++.|...+..+.-
T Consensus 839 -------vy~------itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 839 -------VYS------ITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred -------HHH------hhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 111 13455555555666556666666655543
No 71
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.64 E-value=2.9e-05 Score=68.97 Aligned_cols=331 Identities=15% Similarity=0.040 Sum_probs=205.1
Q ss_pred CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHH
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWT 83 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~ 83 (383)
++++.+..+.-....+.+..++-+.+.+++..+.+++..+..+. +..+.+.+.++--.++.-|..+ .+..-+++|+..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl 91 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL 91 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence 34545555555555666665554555999999999999988764 5666677777656666767443 345558899999
Q ss_pred HHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142 84 LSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ 163 (383)
Q Consensus 84 L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~ 163 (383)
+..+..... .....-.+++..++.+.++.+...+..++.+++.++-. ++ +.+...|++..+.+.+.++..++...
T Consensus 92 iR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P---~lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 92 IRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALL-NP---ELVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CH---HHHHHcCCHHHHHHHHHhccHhHHHH
Confidence 988887632 22234578999999999999999999999999999976 33 56667799999999998877678888
Q ss_pred HHHHHhhhhcCCCccccceecCCChHHHHHhhccc------cch--hHHHHHHHHHHHHhcCCHHHHHHHHh-cCChHHH
Q 037142 164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN------HKT--SIKNYACWIISNITAGNREQIQAVID-AGLIGPL 234 (383)
Q Consensus 164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~------~~~--~~~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L 234 (383)
.+.++..+..... ..+.+...--++.++.-+.+. .+. .....+..++..+...-+...-.-.+ ..++..|
T Consensus 167 l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 167 LLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred HHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 8888888875544 333233222344444444322 022 23344555555554433222211112 2578889
Q ss_pred HHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhchh
Q 037142 235 VNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER------EGCIKPLCDLL---LCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 235 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~------~~~i~~L~~ll---~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
+..+..+++++|+.....+..+..-..+........ .+-+..--++- ........... .-=.+++.
T Consensus 246 v~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~---- 320 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVN---- 320 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHH----
Confidence 999999999999999988888876543322222111 11110000000 00000000000 00001111
Q ss_pred cccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 037142 306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYW 355 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~ 355 (383)
+...-....|.++|.++.|.++..+. ++.+..+|.-+|..++
T Consensus 321 --------~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 321 --------HYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred --------HHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11122445578999999999998876 8889999998887664
No 72
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=8.4e-07 Score=84.61 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=164.9
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC--ChhHHHHHHHHHHhhcCCCC
Q 037142 15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE--NLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~--~~~~~~~a~~~L~~l~~~~~ 92 (383)
.-|++|..+++|+++-.+++.--+.+...|..-++.++..+++.++-..+++.|..++ +++-+..|+++|+.++.+.+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 3499999999999999999999999999988877889888888888888999995423 45778899999999998853
Q ss_pred CCC-hhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142 93 RPI-FDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170 (383)
Q Consensus 93 ~~~-~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~ 170 (383)
.-+ .....+.+.+++.++.++ .+-++..++-||+.|-.+ .....-.-...+..+.|...|.++-++|+.+|+.+|+.
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d-~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED-YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh-cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 333 333477889999999985 688999999999999987 44433334455788999999999999999999999999
Q ss_pred hhcCC----Cccccce------------ecCCCh---HHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142 171 IARGD----YSQTLYI------------INCGAL---PYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI 231 (383)
Q Consensus 171 l~~~~----~~~~~~l------------~~~~~i---~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l 231 (383)
+..+. ++..... .+..+. -.++.+++.. .+-++.+...+++.++.+.......+.-....
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~ 747 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL 747 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence 98752 2222211 111112 2455666777 88899999999999988776665555444444
Q ss_pred HHH
Q 037142 232 GPL 234 (383)
Q Consensus 232 ~~L 234 (383)
+..
T Consensus 748 ~~~ 750 (1387)
T KOG1517|consen 748 PES 750 (1387)
T ss_pred cch
Confidence 433
No 73
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.4e-06 Score=76.39 Aligned_cols=318 Identities=12% Similarity=0.034 Sum_probs=199.4
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC-C
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR-P 94 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~-~ 94 (383)
.+++++.+.++.+++..+|..|+..+.|++.-.. ......-..+...+.++. .+.+..++ .+...+-.+..+-.. .
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVTES 159 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcccc
Confidence 4788999999999999999999999999985211 001111122334445554 34455444 445666666665522 2
Q ss_pred -ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc-hHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 95 -IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 95 -~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
...-..+++|.+...+...++..|.....-+..+-.. ++ +.+..+ ..+++-|+.+|.+++++|+..+=.++.++.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl--~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYL--PSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcc--hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2445588999999999999999999998888888765 22 222222 247888999999999999977666666554
Q ss_pred c---CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch-hHHHH
Q 037142 173 R---GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF-YIKKE 248 (383)
Q Consensus 173 ~---~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~ 248 (383)
. +++... --...++.++.-+.++ ++.++..|+.-+..++.-.+... ...-.|++..+..++.+... .++..
T Consensus 237 ~eI~s~P~s~---d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSSM---DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHHhcCcccc---CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHH
Confidence 2 233221 1235678888888888 99999998877777776443221 11235667777777766544 35554
Q ss_pred HHHH---HHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH
Q 037142 249 AAWA---ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE 325 (383)
Q Consensus 249 a~~~---l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 325 (383)
+... +..++.. +...+.+--..++..|...+.++..+.+..++.-+..+....+..- ..+ .
T Consensus 312 a~~~n~~l~~l~s~--~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql------------~~h--~ 375 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSS--ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL------------LVH--N 375 (675)
T ss_pred HHHHHHHHHHHHhh--hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh------------hhh--c
Confidence 4333 2233322 1222221112467778888888888899888877776666544321 111 1
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 326 AKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 326 ~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
...++.|..-+.+.+++|..++..++.....+.+.
T Consensus 376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 12234444445566777778888888777776654
No 74
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00011 Score=61.88 Aligned_cols=328 Identities=13% Similarity=0.064 Sum_probs=205.7
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh--HHHHHH--HhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP--RFRDLV--LGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR 93 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--~~~~~~--~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (383)
..+.|..-|..++..++..++..++-+..+++ ...+.. ++.|+.+.++.++ -.+|.++...|...+..++..+..
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHHH
Confidence 45556666667888999999999999987665 444443 4789999999999 577889999999999999886533
Q ss_pred CChhhhhchhHHHH--HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhh
Q 037142 94 PIFDQVRPCLPTLA--QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGN 170 (383)
Q Consensus 94 ~~~~~~~~~i~~l~--~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~ 170 (383)
....+.+.....+- .+.-..+.-+|..+...+..+..- ++........+|++..+..-|+. .|.-|+..++.....
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 22233333333321 222233456677788888888877 67777778888999888887876 777788888888888
Q ss_pred hhcCCCccccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhc----C--CHH-HHHHHHhcCChHHHHHHhhcCc
Q 037142 171 IARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITA----G--NRE-QIQAVIDAGLIGPLVNLLQNAV 242 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~----~--~~~-~~~~~~~~~~l~~L~~ll~~~~ 242 (383)
+++. ....+.+.+.|+++.+..++... .+|.-+..++...+.+.. . +++ ..+.++ -+++...+++..++
T Consensus 241 Laet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnD 317 (524)
T KOG4413|consen 241 LAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMND 317 (524)
T ss_pred HHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCC
Confidence 8743 33556678889999999988643 144444445544444321 1 111 111111 13445566677789
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC--hH-HHHhhcCCCCHHHHHHHHHHHHHHHHhch--hcccCcCCCCccc
Q 037142 243 FYIKKEAAWAISNATFGGTHEQIKYLEREGC--IK-PLCDLLLCPDPQIVTVCLKALENILKVGE--AEKNTDTDIGDVN 317 (383)
Q Consensus 243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~--i~-~L~~ll~~~~~~v~~~al~~l~~l~~~~~--~~~~~~~~~~~~~ 317 (383)
+.....|+.+++.+.++ .+..+.+.+.|- .. .+.+..+.....-+..++.+|.++...-. .++... -....
T Consensus 318 pdaieaAiDalGilGSn--teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitD--gkaee 393 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSN--TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITD--GKAEE 393 (524)
T ss_pred chHHHHHHHHHHhccCC--cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccc--cHHHH
Confidence 99999999999999876 466677666553 22 23444443333335556666666654211 111110 00111
Q ss_pred HHHHHHHHh-------ccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 318 QYAQLVEEA-------KGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 318 ~~~~~l~~~-------~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
..+..+.+. ...+....++.+|.++++-.+.+.+..+
T Consensus 394 rlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi 437 (524)
T KOG4413|consen 394 RLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI 437 (524)
T ss_pred HHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence 111111111 2334455678888999988887666544
No 75
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.58 E-value=6.9e-06 Score=73.77 Aligned_cols=275 Identities=12% Similarity=0.081 Sum_probs=179.7
Q ss_pred HHHHhhCC-CChHHHHHHHHHHHHHhcC-ChHHHHHHHhcCChHHH-HHHhcCCCChhHHHHHHHHHHhhcCC-CC-CCC
Q 037142 21 IFVKLLAS-PSDDIRMQSVWALGNIAAE-SPRFRDLVLGEAALIPL-LTQLNNHENLSMKRIATWTLSNLCGG-KP-RPI 95 (383)
Q Consensus 21 ~L~~lL~~-~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L-~~~L~~~~~~~~~~~a~~~L~~l~~~-~~-~~~ 95 (383)
.++....+ +....+.+++.++++++.. .|+.-...- +.++-.+ ..-++..++..+|-.++.+|.+-+.. .. ...
T Consensus 137 ~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s-N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~ 215 (858)
T COG5215 137 EMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS-NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCY 215 (858)
T ss_pred HHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh-hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333 4567888899999998853 342211111 1222223 33444556788888899988873221 11 111
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
.....-+++.....-+.+|.+++..+..|+..+-.- ..+..+...+.-+.......++++++++...+......+|...
T Consensus 216 E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L-yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEe 294 (858)
T COG5215 216 EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML-YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEE 294 (858)
T ss_pred hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 122244666677777788999999999999988754 3455555556556677788899999999999999888887543
Q ss_pred Cccc---ccee-----c--------CCChHHHHHhhccc------cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142 176 YSQT---LYII-----N--------CGALPYLLGLLIDN------HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP 233 (383)
Q Consensus 176 ~~~~---~~l~-----~--------~~~i~~l~~ll~~~------~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~ 233 (383)
-+.. +.+- + .+++|.++++|... ++..+-..|..+|.-.+... .+.+++. ++..
T Consensus 295 id~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~F 370 (858)
T COG5215 295 IDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGF 370 (858)
T ss_pred hhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHH
Confidence 2211 0011 1 13678888888641 14456666666776665422 1222222 4555
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 234 LVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 234 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
+-+-+.+++..-|+.|+.+++.+....+..+..+++. ..+|.+...+.++.-.++..+.|++..+...
T Consensus 371 vEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 371 VEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 5556677888999999999999999877777777654 5788888888877778888999999888764
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=5.8e-06 Score=79.12 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhh-hchhHHHHHhhcc
Q 037142 34 RMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQV-RPCLPTLAQLVHS 112 (383)
Q Consensus 34 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~l~~ll~~ 112 (383)
|..|+..|+.+..-.+-.....+.-|+.|.++++| +++-.+++-..+++-+.+..-++.++...+ .++-.+.++.+.+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL-QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL-QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh-ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 56677778887776667777777889999999999 677788888888887887776666655554 4555666666665
Q ss_pred -C--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHhhhhcCCCccccceecCCCh
Q 037142 113 -N--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP-SQSVLTQALHTVGNIARGDYSQTLYIINCGAL 188 (383)
Q Consensus 113 -~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 188 (383)
+ +++-+..++.+|..++++ ..-..+...+.+++...+..|.++ .+-++..++-+|+.|=.+.+...-.-.+.+..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 2 358889999999999998 666777788888999999999885 68888889999999987777655555667889
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcC----CHHHHHHH------------HhcCCh---HHHHHHhhcCchhHHHHH
Q 037142 189 PYLLGLLIDNHKTSIKNYACWIISNITAG----NREQIQAV------------IDAGLI---GPLVNLLQNAVFYIKKEA 249 (383)
Q Consensus 189 ~~l~~ll~~~~~~~~~~~a~~~l~nl~~~----~~~~~~~~------------~~~~~l---~~L~~ll~~~~~~v~~~a 249 (383)
+.|..+|+++ -++||.+|+++|+.+..+ .++..... ++..+. -.+..+++.+++-+|.+.
T Consensus 645 ekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 645 EKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 9999999998 999999999999998764 22222222 122222 256667778899999999
Q ss_pred HHHHHHhcCC
Q 037142 250 AWAISNATFG 259 (383)
Q Consensus 250 ~~~l~~l~~~ 259 (383)
+.++..+...
T Consensus 724 ~v~ls~~~~g 733 (1387)
T KOG1517|consen 724 VVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.53 E-value=2.9e-05 Score=69.16 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=157.5
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
..++.+.+.+.+.++.++..|.+.++.+.. ...++.+..++ .+.+..++..++.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l-~d~~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELL-SDEDPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHh-cCCCHHHHHHHHHHHHccCCh------
Confidence 367888899999899999999999777653 23578899999 788899999999988887643
Q ss_pred hhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC------------hhhHHH
Q 037142 97 DQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS------------QSVLTQ 163 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~------------~~v~~~ 163 (383)
..++.++.++. +.+..++..+.++|..+-.. ..+..++..+.++. ..++..
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE------------RALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch------------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 27788899888 68999999999999998865 13566666666644 145666
Q ss_pred HHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142 164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF 243 (383)
Q Consensus 164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 243 (383)
+...++.+- +...++.+...+.+. ...+|..+..+++.+...+ ..+.+.+...+.+++.
T Consensus 169 a~~~l~~~~-----------~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 169 AAEALGELG-----------DPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL 227 (335)
T ss_pred HHHHHHHcC-----------ChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH
Confidence 666665543 124578888899888 8899999999999987654 3455678888889999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC 292 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 292 (383)
.+|..++.+++.+-... ....+...+...+..+...+
T Consensus 228 ~vr~~~~~~l~~~~~~~------------~~~~l~~~l~~~~~~~~~~~ 264 (335)
T COG1413 228 EVRKAALLALGEIGDEE------------AVDALAKALEDEDVILALLA 264 (335)
T ss_pred HHHHHHHHHhcccCcch------------hHHHHHHHHhccchHHHHHH
Confidence 99999999998875431 35556666666665555443
No 78
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.52 E-value=3.5e-06 Score=79.75 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=165.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR 100 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 100 (383)
.|.+.+.++|.+.|..|..-|.+=...+...-+.=-+..++..++++| ++.+.+++..|+.+++-++..- ......
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsKv---ke~~le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSKV---KEDQLE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhhc---hHHHHH
Confidence 577788889999999988766442211111111111345678899999 7889999999999999999543 233344
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC----cHHHHHHhcCC--CChhhHHHHHHHHhhhhcC
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG----VCPRLVKLLGH--PSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~i~~l~~~L~~--~~~~v~~~a~~~L~~l~~~ 174 (383)
.++.-|..-+-++..+.+.-..-.|.....+ -++......... +.|.+...+.. +...++-.++..++.+...
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~n-l~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIAN-LPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhc-CCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 5555555554444444444444444333322 111111122222 44555555433 4445788888888777654
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWA 252 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~ 252 (383)
.....-. +..+++..++.-+.+. ...+|+.++.+|+.++... ...... ++..|.+-+.. .....-+.-..+
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCCchHHHHHHHHH
Confidence 4432221 4456777788888888 8999999999999998643 222222 22333333332 344444445666
Q ss_pred HHHhcCCCCHHHHHHHHHcCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhchhcc
Q 037142 253 ISNATFGGTHEQIKYLEREGCIKPLCDLL---LCPDPQIVTVCLKALENILKVGEAEK 307 (383)
Q Consensus 253 l~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~al~~l~~l~~~~~~~~ 307 (383)
|+.++...+...-..+ ..+++.+.+.. +..+.++++.++.++..++..++.+-
T Consensus 237 l~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei 292 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI 292 (1233)
T ss_pred HHHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh
Confidence 6666654332222221 34788888877 67788999999999999999988764
No 79
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.50 E-value=7.3e-07 Score=64.51 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=107.5
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
+.+..|+.-.+...+.+.+++...-|+|++-++.........+++...+..+..++..+.+.++..|+|+|-. ..+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHHH
Confidence 4466777777667799999999999999999876656666788999999999999999999999999999986 77888
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP 189 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 189 (383)
.+.+.+.+|.++..+.++...+...++.++..++...-.....+....+++
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR 144 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence 899999999999999999999999999999999866654444444433333
No 80
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.48 E-value=3.3e-05 Score=69.56 Aligned_cols=273 Identities=14% Similarity=0.108 Sum_probs=175.5
Q ss_pred HHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh----HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 20 PIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL----IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 20 ~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i----~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
.....-++. ++..+|..|+.+|.+-.. ..+..+...+-. +..+..- +.++.+++..+..+|..+..-....
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~kim~LyY~f 255 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKIMMLYYKF 255 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444 667788888888877321 222222222222 2233443 6789999999999998887644221
Q ss_pred -ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH---------------HHHHhCcHHHHHHhcCC---
Q 037142 95 -IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ---------------AVIEAGVCPRLVKLLGH--- 155 (383)
Q Consensus 95 -~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------~~~~~~~i~~l~~~L~~--- 155 (383)
......-......+.+++++.++...+...-..+|....+.... ...-..++|.++.+|..
T Consensus 256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 22222445555667788999999999888777777541110000 00112378899999854
Q ss_pred ----CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142 156 ----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI 231 (383)
Q Consensus 156 ----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l 231 (383)
+++++-..|..||..++....+. +++ .++..+-.-+.++ +..-|+.+..+++.+..+..+....-+-+..+
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd~---i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V~qal 410 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGDK---IMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIVPQAL 410 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhhH---hHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhh
Confidence 46677788888887777554421 222 2344444555667 88889999999999998877766666667789
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHh-hcC--CCCHHHHHHHHHHHHHHHHhchhc
Q 037142 232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCD-LLL--CPDPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~-ll~--~~~~~v~~~al~~l~~l~~~~~~~ 306 (383)
|.+...+.++...++..++|+++.++.. ....++ .+-++..++ ++. .+.|.+..++.|...|++....+.
T Consensus 411 p~i~n~m~D~~l~vk~ttAwc~g~iad~-----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a 484 (858)
T COG5215 411 PGIENEMSDSCLWVKSTTAWCFGAIADH-----VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKA 484 (858)
T ss_pred HHHHHhcccceeehhhHHHHHHHHHHHH-----HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhh
Confidence 9999999999999999999999999854 222222 333333322 221 346677888999999999875543
No 81
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00034 Score=61.31 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=168.7
Q ss_pred cCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh---------HHHHHHHhcCChHHHHHHhcCCCC
Q 037142 3 ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP---------RFRDLVLGEAALIPLLTQLNNHEN 73 (383)
Q Consensus 3 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~~L~~~~~ 73 (383)
.++-|+.-..+++.++++.|+.+|.+++.+|....+..|..++..+. ...+.+++.++++.|++-+ ..-|
T Consensus 111 lAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv-eRLd 189 (536)
T KOG2734|consen 111 LATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV-ERLD 189 (536)
T ss_pred hhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH-HHhh
Confidence 34568888899999999999999999999999999999999885431 1222233333333333333 1112
Q ss_pred hhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc
Q 037142 74 LSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL 153 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L 153 (383)
+.+++. ..-...++..+-|+... .+.....+++.|.+..|+.-+
T Consensus 190 Esvkee-----------------------------------a~gv~~~L~vveNlv~~-r~~~~~~~~e~~ll~WLL~rl 233 (536)
T KOG2734|consen 190 ESVKEE-----------------------------------ADGVHNTLAVVENLVEV-RPAICTEIVEQGLLSWLLKRL 233 (536)
T ss_pred hcchhh-----------------------------------hhhhHHHHHHHHHHHhc-cHHHHHHHHHhhHHHHHHHHH
Confidence 222221 12233445555666665 566666777778877777755
Q ss_pred CC--CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc-----c---ccchhHHHHHHHHHHHHhcCCHHHHH
Q 037142 154 GH--PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-----D---NHKTSIKNYACWIISNITAGNREQIQ 223 (383)
Q Consensus 154 ~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~-----~---~~~~~~~~~a~~~l~nl~~~~~~~~~ 223 (383)
.. +-......+..++..+...++.....+-+..+++.++.-+. + .......++...+|+.+... +..+.
T Consensus 234 ~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~ 312 (536)
T KOG2734|consen 234 KGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRE 312 (536)
T ss_pred hcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhh
Confidence 43 34455677778888777777666666666788888877663 1 11234455566666665544 47788
Q ss_pred HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcC-CC---------CHHHHHHH
Q 037142 224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDLLL-CP---------DPQIVTVC 292 (383)
Q Consensus 224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~-~~---------~~~v~~~a 292 (383)
.++...++..+.-+++. ....+..|..+|-....+. ..+.+..+++..+...++.+.- .+ ..+.-+..
T Consensus 313 ~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv 391 (536)
T KOG2734|consen 313 RFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHV 391 (536)
T ss_pred hhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHH
Confidence 88877777666555555 5567778888998888764 3467777788766666665433 21 22455667
Q ss_pred HHHHHHHHHhch
Q 037142 293 LKALENILKVGE 304 (383)
Q Consensus 293 l~~l~~l~~~~~ 304 (383)
+..|+.++..+.
T Consensus 392 ~siiaSl~~~~~ 403 (536)
T KOG2734|consen 392 CSILASLLRNLD 403 (536)
T ss_pred HHHHHHHHHhcc
Confidence 777888877653
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.48 E-value=4e-05 Score=68.94 Aligned_cols=221 Identities=19% Similarity=0.073 Sum_probs=156.1
Q ss_pred CChHHHHHhhC-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 17 GAVPIFVKLLA-SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
.+++.++..|. +.+.+++..+++++. ..+.+ ..+..|+..| .+.++.++..+..+|+.+-..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVL-QAGPEGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHh-cCCCHHHHHHHHHHHhcCCch-----
Confidence 45778888884 577888777666654 22221 1278899999 677888999999998865433
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
...+.|..++++.++.++..++.++...... ..+.+..+|+++++.++..++++++.+-..
T Consensus 117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------------PGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred -----HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 3778899999999999998888766653322 346788888999999999999999887521
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH------------------h----cCChHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI------------------D----AGLIGP 233 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~------------------~----~~~l~~ 233 (383)
..++.|...+.+. ++.||..|++.++.+.. +.....+. . ...++.
T Consensus 178 ----------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~ 244 (410)
T TIGR02270 178 ----------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAW 244 (410)
T ss_pred ----------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHH
Confidence 3466777888888 99999999998876632 11111111 1 123444
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 234 LVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 234 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
|..+++++ .++..++++++.+-.. ..++.|+..+.+.. +...|.+++..++-.
T Consensus 245 L~~ll~d~--~vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 245 LRELLQAA--ATRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred HHHHhcCh--hhHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 55555543 3888888888877543 25778888876544 888899999988853
No 83
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.45 E-value=3.7e-06 Score=60.92 Aligned_cols=154 Identities=8% Similarity=0.040 Sum_probs=121.7
Q ss_pred CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265 (383)
Q Consensus 186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 265 (383)
+.+..|+.-.....+.+.++....-|.|.+. +|.+-..+.+.++++.+++.+..++..++..+...|||+|.. +...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHH
Confidence 4455666655555488888888888888865 457777888999999999999999999999999999999976 7888
Q ss_pred HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 037142 266 KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHE 345 (383)
Q Consensus 266 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~ 345 (383)
+.+.+.++++.++..+.++...+...++.++..+...+. ..+..+-...+++.+++.-.+.+-+.+.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-------------t~r~ell~p~Vv~~v~r~~~s~s~~~rn 159 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-------------TERDELLSPAVVRTVQRWRESKSHDERN 159 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-------------chhHHhccHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999988888888888876654322 2344455666777777777777777777
Q ss_pred HHHHHHHHhc
Q 037142 346 KSAKILETYW 355 (383)
Q Consensus 346 ~a~~~l~~~~ 355 (383)
.|...++.+.
T Consensus 160 La~~fl~~~~ 169 (173)
T KOG4646|consen 160 LASAFLDKHV 169 (173)
T ss_pred HHHHHHHhhc
Confidence 7877777654
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.44 E-value=7.1e-05 Score=67.35 Aligned_cols=152 Identities=16% Similarity=0.056 Sum_probs=118.0
Q ss_pred ChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142 60 ALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA 139 (383)
Q Consensus 60 ~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (383)
.++.++..|..+++.++...+++++... +.+ ..+..++..+.+.++.++..+..+|..+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~--------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-------- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--EDA--------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR-------- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CCh--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch--------
Confidence 4677888885566677777666655422 211 1488999999999999999999999876643
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142 140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
+..+.|..+|+++++.++..++.+++... ....+.+..++++. ++.++..++++++.+...
T Consensus 117 ----~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 ----QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHE-DALVRAAALRALGELPRR-- 177 (410)
T ss_pred ----HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCC-CHHHHHHHHHHHHhhccc--
Confidence 35688999999999999998887776621 12367888999988 999999999999988643
Q ss_pred HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
..++.|...+.+.++.||..|++++..+-
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 35666788899999999999999997774
No 85
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=7.4e-05 Score=62.31 Aligned_cols=269 Identities=16% Similarity=0.144 Sum_probs=165.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHH-hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVL-GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
.-++.++.+.+|.++..|...+..++.. ..+...- ..-.++.+.+++. ..++ .+.|+.++.|++.+... ....
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~-~~~~--~~~a~~alVnlsq~~~l-~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK-DLDP--AEPAATALVNLSQKEEL-RKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc-Cccc--ccHHHHHHHHHHhhHHH-HHHH
Confidence 4578899999999999999999988865 2222111 1234677888884 4333 77899999999988522 2333
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH--HH----hCcHHHHHHhcCCC-C-hhhHHHHHHHHhh
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV--IE----AGVCPRLVKLLGHP-S-QSVLTQALHTVGN 170 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~----~~~i~~l~~~L~~~-~-~~v~~~a~~~L~~ 170 (383)
...++..+...+.+....+-..+|..+.|+++. +....... .. +|++.....+..++ + .--.......+.|
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~-~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSRD-DDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhccC-chHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 334777777777777778888999999999987 33222221 11 34433333344332 1 1223455667777
Q ss_pred hhcCCCccccceecCCC--hHHHHHhhccccchhHHHH-HHHHHHHHhcCCHHHHHHHHh--cCChHHHH----------
Q 037142 171 IARGDYSQTLYIINCGA--LPYLLGLLIDNHKTSIKNY-ACWIISNITAGNREQIQAVID--AGLIGPLV---------- 235 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~--i~~l~~ll~~~~~~~~~~~-a~~~l~nl~~~~~~~~~~~~~--~~~l~~L~---------- 235 (383)
++..... ...+..... ...+..+- +. +..+|+. .+++|.|++... .....+++ .+++|.+.
T Consensus 159 ls~~~~g-R~l~~~~k~~p~~kll~ft-~~-~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 159 LSQFEAG-RKLLLEPKRFPDQKLLPFT-SE-DSQVRRGGVAGTLKNCCFDA-KLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred Hhhhhhh-hhHhcchhhhhHhhhhccc-cc-chhhhccchHHHHHhhhccc-hhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 7754432 233333332 22333332 33 5566554 678888887654 22233332 22233322
Q ss_pred -----------HHhh-----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHH
Q 037142 236 -----------NLLQ-----NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALEN 298 (383)
Q Consensus 236 -----------~ll~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~ 298 (383)
+++. .+++.+|+.-..+|..+|.. ...++.+.+.|+.+.+-.+-+.. +++++..+-.....
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3332 24779999999999999876 78899989999999888887764 66666655444444
Q ss_pred HHH
Q 037142 299 ILK 301 (383)
Q Consensus 299 l~~ 301 (383)
+++
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 443
No 86
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.40 E-value=4.3e-05 Score=72.70 Aligned_cols=268 Identities=14% Similarity=0.109 Sum_probs=161.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142 63 PLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141 (383)
Q Consensus 63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 141 (383)
.|++.+ .++|.++|-.|+.=|.+=..+. -..+.......+..+++++++.+.+++..|..|++-++.....+....
T Consensus 9 ~Llekm-tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~-- 85 (1233)
T KOG1824|consen 9 NLLEKM-TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET-- 85 (1233)
T ss_pred HHHHHc-cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH--
Confidence 466677 5778888888887665443333 333555567899999999999999999999999999996523333333
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc-----ccchhHHHHHHHHHHHHhc
Q 037142 142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID-----NHKTSIKNYACWIISNITA 216 (383)
Q Consensus 142 ~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~-----~~~~~~~~~a~~~l~nl~~ 216 (383)
+++.|..-+-++..+.+.-+.-.|.....+-+.......-..+.+.+...+.+ .....++..++..++-+..
T Consensus 86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 34455555444443344332222222222222222233444445555444432 2134588888888877654
Q ss_pred CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHH
Q 037142 217 GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKA 295 (383)
Q Consensus 217 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~ 295 (383)
.-....-. +..+++..++.-+.++..-+|+.|+.+|+.++..++.....+ ++..|.+-|..+ .+.....-+.+
T Consensus 163 r~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 163 RFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred hhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCCchHHHHHHHHH
Confidence 33222211 344556666667778888999999999999998877665555 466666666543 34444445667
Q ss_pred HHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh---cCCCHHHHHHHHHHHHHhcC
Q 037142 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ---RHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 296 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~---~~~~~~v~~~a~~~l~~~~~ 356 (383)
|..+++..+.+... +.. ..++.+.++. +..++++++.+.+.++.|..
T Consensus 237 l~~i~r~ag~r~~~---------h~~-----~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGS---------HLD-----KIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHhcchhhc---------ccc-----hhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 77777665543211 111 1234445555 66667777777777766543
No 87
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00011 Score=66.20 Aligned_cols=271 Identities=10% Similarity=0.030 Sum_probs=170.3
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI 95 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 95 (383)
.+|.|-+-+...++..|...+.-|..+-...+ +....+ ..+++.|+..| .+++.+++..+=.+++++...- ..+.
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45555555556788888887766666554322 111111 24567788899 6778888877766666654432 1222
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh-hHHHHHH---HHhhh
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALH---TVGNI 171 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~-v~~~a~~---~L~~l 171 (383)
.......++.++..+.++++.++..|+.-+..+..- . +..-...-+|++..++.++.++++. +...+.. .+..+
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i-~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI-P-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcC-C-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 224567899999999999999998887777766654 2 2222233357888888888886653 4333322 22233
Q ss_pred hcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHH
Q 037142 172 ARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAA 250 (383)
Q Consensus 172 ~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 250 (383)
+..... .+. ++. .+++.+...++++ ....|..++.-+..+-...+. ........+++.|..-+.+.+..+...+.
T Consensus 323 ~s~~~~-~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 323 VSSERL-KEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred Hhhhhh-ccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 322211 111 333 4678888888888 889999988777766543322 22223567888999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 251 WAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 251 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
..++++|...+..+... ++..|++++..+..-+...+-..+.+++..
T Consensus 399 ~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 399 SLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 99999998753322211 345566666555444455565566665543
No 88
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.39 E-value=2.8e-05 Score=65.00 Aligned_cols=267 Identities=14% Similarity=0.091 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142 75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154 (383)
Q Consensus 75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~ 154 (383)
..+..-..++.....+.+........-+...|-++++.-++-.+.-+..++.++.-. .....-...+..+-.+++..++
T Consensus 123 ~~k~~f~~vf~~~~~~~~~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~ 201 (432)
T COG5231 123 KHKKEFLSVFKQMLKDNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQ 201 (432)
T ss_pred HHHHHHHHHHHHHccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHH
Confidence 344444555555555543332222223444555566666666788888999998865 2222223345456677888887
Q ss_pred C--CChhhHHHHHHHHhhhhcCCCccccceec--CCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHH-hc
Q 037142 155 H--PSQSVLTQALHTVGNIARGDYSQTLYIIN--CGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVI-DA 228 (383)
Q Consensus 155 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~-~~ 228 (383)
. ++.+++...+-+++.++.+.. ..+ .++ ...+.-++.+.+....+.+-+-++.++.|++... ...+..+. .+
T Consensus 202 n~vg~~qlQY~SL~~iw~lTf~~~-~aq-di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~ 279 (432)
T COG5231 202 NYVGVKQLQYNSLIIIWILTFSKE-CAQ-DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLN 279 (432)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhc
Confidence 6 678899999999999986543 332 222 1345666666665547788888999999998733 23444443 44
Q ss_pred CChHHHHHHhhc--CchhHHHHHHHHHHHhcCC---------------------CC--------HHHHHHHHH--cCChH
Q 037142 229 GLIGPLVNLLQN--AVFYIKKEAAWAISNATFG---------------------GT--------HEQIKYLER--EGCIK 275 (383)
Q Consensus 229 ~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~---------------------~~--------~~~~~~l~~--~~~i~ 275 (383)
++.+..-.++.. .+.+++...-..=..+..+ .. ..++..+.+ ..++.
T Consensus 280 ~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k 359 (432)
T COG5231 280 DISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVK 359 (432)
T ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHH
Confidence 455555444443 2444443322211111100 00 122333333 24677
Q ss_pred HHHhhcCCCCHH-HHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 276 PLCDLLLCPDPQ-IVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 276 ~L~~ll~~~~~~-v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
.|...++...+. ....|+.-+..+++. .++...++...|+-+.+.+|++|++++|+-.|..++..+
T Consensus 360 ~L~~~lq~n~~nt~i~vAc~Di~~~Vr~-------------~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 360 VLKKYLQSNNPNTWICVACSDIFQLVRA-------------SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHhcCCCCceEeeeHhhHHHHHHh-------------CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 788888876665 344567777777764 345677899999999999999999999999999988876
Q ss_pred cCC
Q 037142 355 WCG 357 (383)
Q Consensus 355 ~~~ 357 (383)
.+.
T Consensus 427 i~~ 429 (432)
T COG5231 427 ISS 429 (432)
T ss_pred Hhh
Confidence 543
No 89
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.38 E-value=8.3e-07 Score=51.65 Aligned_cols=41 Identities=41% Similarity=0.611 Sum_probs=38.0
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
+++.++.+++.|++|.|+.++.+++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788899999999999999999999999999999999973
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.37 E-value=4.8e-05 Score=71.27 Aligned_cols=236 Identities=15% Similarity=0.119 Sum_probs=166.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHH---HHHHHhcCChHHHHHHhcCC------CChhHHHHHHHHHHhhc
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRF---RDLVLGEAALIPLLTQLNNH------ENLSMKRIATWTLSNLC 88 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~~L~~~------~~~~~~~~a~~~L~~l~ 88 (383)
.++.-+++|+..+++-+..++..+.++...++.. ++.+.+.=+...+-++|+.. +....+.-++.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3566678899888888889999999999766532 33466665578888888431 34577888999999999
Q ss_pred CCCCCCChhhhhchhHHHHHhhccCCH-HHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142 89 GGKPRPIFDQVRPCLPTLAQLVHSNDE-HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT 167 (383)
Q Consensus 89 ~~~~~~~~~~~~~~i~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~ 167 (383)
.++.......+-+-+|.++..+...+. ++...++.+|..++.. ++..+.+.+.|.++.|.+.+.+ .+.....++.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 976555556678899999999987776 9999999999999965 7888999999999999999988 55678888888
Q ss_pred HhhhhcCCCccccceecC----CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH-HHHHHhcC----ChHHHHHHh
Q 037142 168 VGNIARGDYSQTLYIINC----GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ-IQAVIDAG----LIGPLVNLL 238 (383)
Q Consensus 168 L~~l~~~~~~~~~~l~~~----~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~-~~~~~~~~----~l~~L~~ll 238 (383)
+.+++.......-. -.. .++..+...+... ....+...+..|+.+....+.. ........ +..-+..++
T Consensus 163 L~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 163 LLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 88887654311110 111 3345555555555 6677888899999887655211 11112223 344455566
Q ss_pred hc-CchhHHHHHHHHHHHhcC
Q 037142 239 QN-AVFYIKKEAAWAISNATF 258 (383)
Q Consensus 239 ~~-~~~~v~~~a~~~l~~l~~ 258 (383)
.+ ..+.-|..+....+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 55 356667766666666543
No 91
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.37 E-value=2.6e-05 Score=76.01 Aligned_cols=295 Identities=14% Similarity=0.102 Sum_probs=187.0
Q ss_pred hHHHHHhhCC-CChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC----C
Q 037142 19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK----P 92 (383)
Q Consensus 19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~----~ 92 (383)
++.+...+.. ...+.+..|+..|..++... .+.+ =..++|.++.++ .++...++..|+.+|..+.... +
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 5556666655 66788899999999888522 1211 134689999999 7888999999998887776433 2
Q ss_pred CCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142 93 RPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l 171 (383)
.....+..-++|.|..++.+ ....+|..-+.+|..|+.. . ..+.+.+.-.....++.+++.+. ...
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t-A----~rFle~~q~~~~~g~~n~~nset-------~~~- 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT-A----YRFLELTQELRQAGMLNDPNSET-------APE- 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH-H----HHHHHHHHHHHhcccccCccccc-------ccc-
Confidence 33445558899999999998 4566787888888888854 2 12222222223333455544430 000
Q ss_pred hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHH
Q 037142 172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAW 251 (383)
Q Consensus 172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 251 (383)
...+...+.+.+ ++-.....++.++ ++.|++.-+..|.-||..-. +.--+.-+++.|+..|++.+..+|-.-..
T Consensus 566 -~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 566 -QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred -cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHh
Confidence 011111111221 2334555666666 78888888888777764211 11112336889999999998888876555
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH
Q 037142 252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK 331 (383)
Q Consensus 252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (383)
.|.-++..-+..- .+..++|.|.+-+.++++-|...|++++..+++.+--++. .+.++ ++.
T Consensus 640 sI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------~v~~i------~~~ 700 (1431)
T KOG1240|consen 640 SIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------AVKDI------LQD 700 (1431)
T ss_pred hccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------HHHHH------HHh
Confidence 5554433322111 2345788888999999999999999999999986543321 12222 345
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 332 IENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 332 L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
...++-|||.=|++.+..+|.....
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHh
Confidence 5677889999999999887765443
No 92
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00035 Score=67.65 Aligned_cols=292 Identities=14% Similarity=0.149 Sum_probs=187.6
Q ss_pred cCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHH
Q 037142 3 ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATW 82 (383)
Q Consensus 3 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~ 82 (383)
++.+.+-.+.++..|.+..|+.+|.+. |..|..++..|..+++. ++..+..++.|++..+..++..+.....+.+++.
T Consensus 1799 ~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAe 1876 (2235)
T KOG1789|consen 1799 ATANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAE 1876 (2235)
T ss_pred HhcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHH
Confidence 344556667788899999999999764 57799999999999975 4777777889999999999887888889999999
Q ss_pred HHHhhcCCC---CCCChhhh-----------hchhHHHHHhhcc--CCHHH------HHHHHHHHHHhcc----CC---C
Q 037142 83 TLSNLCGGK---PRPIFDQV-----------RPCLPTLAQLVHS--NDEHV------MSNACWGLSLLCD----GG---K 133 (383)
Q Consensus 83 ~L~~l~~~~---~~~~~~~~-----------~~~i~~l~~ll~~--~~~~~------~~~~~~~l~~l~~----~~---~ 133 (383)
.++.+..+. |......+ .+.-...+..++. ++|++ +......+..+.. +. +
T Consensus 1877 LlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p 1956 (2235)
T KOG1789|consen 1877 LLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDP 1956 (2235)
T ss_pred HHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999998876 32222111 1112223334431 22221 1112222222111 00 0
Q ss_pred c------h-------------------------------HHHHHHHhCcHHHHHHhcCCCCh--hhHHHHHHHHhhhhcC
Q 037142 134 N------D-------------------------------EIQAVIEAGVCPRLVKLLGHPSQ--SVLTQALHTVGNIARG 174 (383)
Q Consensus 134 ~------~-------------------------------~~~~~~~~~~i~~l~~~L~~~~~--~v~~~a~~~L~~l~~~ 174 (383)
. + +-+.+. .++++.+.+++..+++ ........++-.|...
T Consensus 1957 ~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL-~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~ 2035 (2235)
T KOG1789|consen 1957 TVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL-TELLEKVLELMSRPTPEQHELDLLTKAFVELVRH 2035 (2235)
T ss_pred cccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHH-HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHh
Confidence 0 0 000111 1345666666655332 2333333444555566
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 254 (383)
.+...+++-..|.+|.++..+... +..+-..|++++..++.+. ...+.+.....+..++..|...- ....-|+.+|-
T Consensus 2036 hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2036 HPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALK 2112 (2235)
T ss_pred CcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHH
Confidence 777777788889999999999887 7777799999999997654 66777777777777888776543 23337788888
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCCCC-------HHHHHHHHHHHHHHH
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPD-------PQIVTVCLKALENIL 300 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------~~v~~~al~~l~~l~ 300 (383)
.+......+.....++.|+++.|+.+|+... ...+.....+|...+
T Consensus 2113 R~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk~~~ 2165 (2235)
T KOG1789|consen 2113 RLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDALKSAI 2165 (2235)
T ss_pred HHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHHHHHHH
Confidence 8876655566666678999999999998532 233444455554444
No 93
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=9.6e-05 Score=68.26 Aligned_cols=278 Identities=14% Similarity=0.132 Sum_probs=171.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
.+-+-| .+.|+....-|+.+++|+.... .....-+-+-+++-+.+ .-+++.++.|+..|.+. .++.+..
T Consensus 115 ~iknDL-~srn~~fv~LAL~~I~niG~re------~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~-spDl~~~- 185 (938)
T KOG1077|consen 115 SIKNDL-SSRNPTFVCLALHCIANIGSRE------MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRK-SPDLVNP- 185 (938)
T ss_pred HHHhhh-hcCCcHHHHHHHHHHHhhccHh------HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhc-CccccCh-
Confidence 344444 4567888889999999988653 22223344446776554 67889999999999987 5443332
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc-----------------cccchhH
Q 037142 141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-----------------DNHKTSI 203 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~-----------------~~~~~~~ 203 (383)
.+..++++++|.+.+-.+..++...+-.++...++... +.++.-+.-|. -+ .|.+
T Consensus 186 --~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP-~PWL 257 (938)
T KOG1077|consen 186 --GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVP-APWL 257 (938)
T ss_pred --hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCC-ChHH
Confidence 35678999999999999999999999999877665433 22332222221 13 6788
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcC--ch-----hHHHHHHHHHHHhcCCC--CHHHHHHHHHcCC
Q 037142 204 KNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNA--VF-----YIKKEAAWAISNATFGG--THEQIKYLEREGC 273 (383)
Q Consensus 204 ~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~--~~-----~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~ 273 (383)
+...++.|.++-.. ++..+..+.+ +++.+....+.+ +. ..+....+-..+++.+- .++.... .
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~ 330 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----A 330 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----H
Confidence 88999999888432 2233333322 333333333311 11 22222233334444332 2232222 6
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHH
Q 037142 274 IKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILE 352 (383)
Q Consensus 274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~ 352 (383)
+..|.+++.+.++.+|.-++..++.++..... ...+... .+.+...+. .++-.|+++|.++|.
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--------------~davK~h--~d~Ii~sLkterDvSirrravDLLY 394 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFS--------------IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLY 394 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccch--------------HHHHHHH--HHHHHHHhccccchHHHHHHHHHHH
Confidence 78899999999999999999999888875321 1122222 234444444 788889999999999
Q ss_pred HhcCCCCC----CCCcccccccccccchhhhc
Q 037142 353 TYWCGRVV----GPQPGLLYAGNEENEEEDAL 380 (383)
Q Consensus 353 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 380 (383)
.+.+.++. +.+-+.+..++..+|++-+.
T Consensus 395 ~mcD~~Nak~IV~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 395 AMCDVSNAKQIVAELLQYLETADYSIREEIVL 426 (938)
T ss_pred HHhchhhHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 98888763 33334444566666655443
No 94
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.33 E-value=0.00014 Score=64.67 Aligned_cols=239 Identities=15% Similarity=0.111 Sum_probs=171.9
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhhhcCCCc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l~~~~~~ 177 (383)
....+.+..++-+++.+++..+..++..+..+ .+..+.+.+.++--.++..|..+ +..=+.+|++.++.+......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 33444555455555599999999999999987 67778888877766677777664 344567999999999865332
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
.+ .+..|++..++.+..+. ++.++..|+.++..++-.+|+. +...|++..|.+.+.++..++....+.++..+.
T Consensus 102 -~~-~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 102 -PK-EIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred -cc-cCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 12 34668999999999998 9999999999999999877653 467999999999998887778888999999998
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhcCCC-------CH--HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhcc
Q 037142 258 FGGTHEQIKYLEREGCIKPLCDLLLCP-------DP--QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKG 328 (383)
Q Consensus 258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (383)
.. +...+++...--+..++.-+.+. +. +-...+..++..+++.-++.-.. -..+..+
T Consensus 176 d~--p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l------------~~~~~~~ 241 (371)
T PF14664_consen 176 DS--PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL------------SMNDFRG 241 (371)
T ss_pred CC--cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee------------ecCCchH
Confidence 76 55566554433344444433222 22 24455677777777653322110 0112246
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 329 LEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 329 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
++.|.+.+..|+.++++...+++..+|.-...
T Consensus 242 lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 77788889999999999999999999887653
No 95
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.33 E-value=3.9e-06 Score=70.24 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=121.6
Q ss_pred CCCChHHHHHHHHHHHHHhcCC--hHHHHHHHh--cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142 27 ASPSDDIRMQSVWALGNIAAES--PRFRDLVLG--EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC 102 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~--~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 102 (383)
.+.+++.|..|+.-|..+.... ......+.. ..++..+...+ ++....+...|+.++..++......-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5689999999999999988654 222232221 14556777777 566778999999999999876533333345789
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccce
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYI 182 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 182 (383)
+|.|++.+.++...++..+..+|..++.. .+ ....+ ..+.+...+.+.++.++..++..+..+....+.....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~-~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIES-CS-YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTT-S--H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHH-CC-cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 99999999999999999999999999987 33 11111 25677788899999999999999999986655222223
Q ss_pred ecC----CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHH
Q 037142 183 INC----GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAV 225 (383)
Q Consensus 183 ~~~----~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~ 225 (383)
-.. .+++.+...+.+. ++.+|..|-.++..+....++....+
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 222 3677788888888 99999999999988865544444433
No 96
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=6.3e-05 Score=72.07 Aligned_cols=302 Identities=17% Similarity=0.131 Sum_probs=196.6
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
++.+..++++...+.+..++.-...++. .+......+....+++.+-.+. .+.+..++...+..+..+.--.+ ...
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCc
Confidence 3444445555445555555444444442 1112223333344455555555 56677777766665555543322 223
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
.+....|.....+++.++.++.+..+.+..+-...+........+ ..+|.+..+-.+...+++.+.++.+..++....
T Consensus 434 ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~-slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 434 TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN-SLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh-hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 456788899999999999999999988766554423344444444 377888888888889999999999999885544
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
..+++...-+.+...+.+. ...+++.|...+..++.... ..-.....++.+.....++++..|...+.++.-++
T Consensus 512 --~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 2244444555666666666 77899999998888875322 11122345667777776778889998888888776
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc
Q 037142 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR 337 (383)
Q Consensus 258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~ 337 (383)
...+.+ +....+++.+.++..+..+.|+..+++.+..+...-... ..+.-..+.++.+..
T Consensus 586 ~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 586 EVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----------------VRDEEVLPLLETLSS 645 (759)
T ss_pred HHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----------------HHHHHHHHHHHHhcc
Confidence 543322 233347999999999999999999999999888754432 233444566777777
Q ss_pred CCCHHHHHHHHHHH
Q 037142 338 HDNYEIHEKSAKIL 351 (383)
Q Consensus 338 ~~~~~v~~~a~~~l 351 (383)
+++-+++..|..+.
T Consensus 646 d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 646 DQELDVRYRAILAF 659 (759)
T ss_pred CcccchhHHHHHHH
Confidence 77777777766544
No 97
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.00022 Score=60.11 Aligned_cols=263 Identities=15% Similarity=0.132 Sum_probs=186.1
Q ss_pred HHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc----hHHHHHHHhCcHHHHHHhcC
Q 037142 79 IATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN----DEIQAVIEAGVCPRLVKLLG 154 (383)
Q Consensus 79 ~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~i~~l~~~L~ 154 (383)
-++.+|-.+.... .......+..|.|..-+..++..++.-+|..+..+..+ .+ ..+..++..++++.++.++.
T Consensus 62 lcVscLERLfkak--egahlapnlmpdLQrGLiaddasVKiLackqigcilEd-cDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 62 LCVSCLERLFKAK--EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED-CDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred hHHHHHHHHHhhc--cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc-CchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 3677777777643 22334567778888888888889999999988888876 33 33445667899999999999
Q ss_pred CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH--hhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142 155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG--LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG 232 (383)
Q Consensus 155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~--ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~ 232 (383)
.+|.+|...+...+..++.... ....+++....+.+-. +.... +.-.|...+..+-.+.+-++......-..|.+.
T Consensus 139 geddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLld 216 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLD 216 (524)
T ss_pred CCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence 9999999999999999986544 3444666666654432 22333 667788888888888888888888888899999
Q ss_pred HHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhchhcccC
Q 037142 233 PLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALENILKVGEAEKNT 309 (383)
Q Consensus 233 ~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~ 309 (383)
.|..=|.. .+.-++..+......++.. ....+++.+.|+++.+++.+. +.+|--+..++-....++....-...
T Consensus 217 lLeaElkGteDtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv- 293 (524)
T KOG4413|consen 217 LLEAELKGTEDTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV- 293 (524)
T ss_pred HHHHHhcCCcceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc-
Confidence 88888876 5777888888888888765 556778888999999999886 44555555566666666644322211
Q ss_pred cCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 310 DTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
.....++.+. -.++.-.++.+..+++..+.|.+.+-.+=.
T Consensus 294 -----seeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 294 -----SEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred -----CHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 1112222221 134555677788888888888887765433
No 98
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00012 Score=70.68 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=197.1
Q ss_pred CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
|.++.+..++.. .+++++..|+..+..++.. .++...+...|.+..|+.+|. .-+..+..++.+|.-+++......
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLH--S~PS~R~~vL~vLYAL~S~~~i~k 1847 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLH--SQPSMRARVLDVLYALSSNGQIGK 1847 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHh--cChHHHHHHHHHHHHHhcCcHHHH
Confidence 788888888875 8899999999998888764 478888889999999999993 356789999999999998754434
Q ss_pred hhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCC---CchHHH----------HHHHhCcHHHHHHhcCC--CCh-
Q 037142 96 FDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGG---KNDEIQ----------AVIEAGVCPRLVKLLGH--PSQ- 158 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~---~~~~~~----------~~~~~~~i~~l~~~L~~--~~~- 158 (383)
.....|++..+..++- ++.++.+.+++..+..+..++ +.-.+. ..... .-+..++.+.. ++|
T Consensus 1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPE 1926 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPE 1926 (2235)
T ss_pred HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcc
Confidence 4455777777776665 567899999999999988652 110110 11111 12445555543 222
Q ss_pred -----hhHHHHHHHHhhhhcC-------CCcc-------------------------ccceec------------CCChH
Q 037142 159 -----SVLTQALHTVGNIARG-------DYSQ-------------------------TLYIIN------------CGALP 189 (383)
Q Consensus 159 -----~v~~~a~~~L~~l~~~-------~~~~-------------------------~~~l~~------------~~~i~ 189 (383)
..+......+..++.. ++.. ...+.+ .+.++
T Consensus 1927 LiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLe 2006 (2235)
T KOG1789|consen 1927 LIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLE 2006 (2235)
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHH
Confidence 2233333334433310 0000 000000 12244
Q ss_pred HHHHhhcccc-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037142 190 YLLGLLIDNH-KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYL 268 (383)
Q Consensus 190 ~l~~ll~~~~-~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l 268 (383)
.+.+++..+. +...-.--..++-.+....+...+.+-..|-+|.++..+...+..+-+.|..+|..++.+ .-....+
T Consensus 2007 k~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen--~~C~~AM 2084 (2235)
T KOG1789|consen 2007 KVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN--QFCCDAM 2084 (2235)
T ss_pred HHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc--cHHHHHH
Confidence 4555554331 222222233344455566677777777889999999999887777778999999999987 4667777
Q ss_pred HHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142 269 EREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH 338 (383)
Q Consensus 269 ~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 338 (383)
.....+..++..++... +..--|+.+|.+++...... -..+.+ .+|.++.|..|++.
T Consensus 2085 A~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~e-----------LVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGE-----------LVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred hccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHH-----------HHHHHh-ccCcHHHHHHHhcc
Confidence 77777888888776443 33447889999998743322 234444 78899999888774
No 99
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=3.2e-06 Score=75.30 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=121.9
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
.-..+++.+|..++.........+.+..+.+.|+++|+.+ +..+...+...+.|.+..-......++..+++..++.++
T Consensus 404 l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v 482 (743)
T COG5369 404 LDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV 482 (743)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh
Confidence 3445667777777765555555677888999999999988 888888899999998876667778888999999999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
.+.+..++....|++.++..++.....-.++...++..++++..+++..++.+++..+.|+.....+
T Consensus 483 ~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~k 549 (743)
T COG5369 483 MSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSK 549 (743)
T ss_pred hcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccc
Confidence 9999999999999999999987555455556778899999999999999999999999999985554
No 100
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=3.1e-05 Score=72.29 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=116.6
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
++++.+++=.++++|.+|..|++.++.+--+ ...+.+ ..++.+.+ ++.++.++..+..+..++-..+ .+.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey~-----~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~--~~~ 155 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEYL-----CDPLLKCL-KDDDPYVRKTAAVCVAKLFDID--PDL 155 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHHH-----HHHHHHhc-cCCChhHHHHHHHHHHHhhcCC--hhh
Confidence 4667777777889999999999988876532 333333 57889999 6888999999999999988764 344
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
....|+++.|..++.++++.+..+|+.++..+... .............+..++..+..-+..-+...+.++.+....++
T Consensus 156 ~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~-~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSNPMVVANALAALSEIHES-HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh-CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 55689999999999999999999999999999976 32111111111233444444444445555555555555443332
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
...+ .++..+...+.+. ++.+...+..++.++.
T Consensus 235 ~ea~-----~i~~r~~p~Lqh~-n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 235 REAE-----DICERLTPRLQHA-NSAVVLSAVKVILQLV 267 (734)
T ss_pred hhHH-----HHHHHhhhhhccC-CcceEeehHHHHHHHH
Confidence 1111 2344444455554 4444444554444444
No 101
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.1e-05 Score=73.64 Aligned_cols=219 Identities=15% Similarity=0.139 Sum_probs=143.2
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC--Cc--h-HHH
Q 037142 64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG--KN--D-EIQ 138 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~--~~--~-~~~ 138 (383)
++.+. .+.+..++.+|+..+..|.... ...........+++.+++..+|..|...+....... +. + .-.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 44554 5667777777777777766532 122335666778889999999999876665544331 11 1 111
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHH-HHHHHHHH--h
Q 037142 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNY-ACWIISNI--T 215 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~-a~~~l~nl--~ 215 (383)
.+.+. .+..+.+.+.+-+..|+..|.++|+.+-.-+++...+.++..++ +-+... ..... .-...++. +
T Consensus 277 kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlm----s~lRRk---r~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 277 KLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLM----SRLRRK---RTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHh----hhhhhh---hhcccchHHHHhcCCcc
Confidence 23333 67888999999999999999999998876666544444433222 211110 11111 11111111 1
Q ss_pred c-----------CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC
Q 037142 216 A-----------GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP 284 (383)
Q Consensus 216 ~-----------~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 284 (383)
. ..++....++.+|.-..++.-+.+.-.+||+.|+..++.++.+ ++..... .+..|++++.++
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccH
Confidence 0 1123445566788888888888888999999999999999986 3454444 588999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 037142 285 DPQIVTVCLKALENILKV 302 (383)
Q Consensus 285 ~~~v~~~al~~l~~l~~~ 302 (383)
...|+..|+.+|..+...
T Consensus 423 ~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999888865
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00028 Score=65.35 Aligned_cols=260 Identities=13% Similarity=0.088 Sum_probs=166.7
Q ss_pred HhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142 24 KLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKPRPIFDQVRPC 102 (383)
Q Consensus 24 ~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 102 (383)
+=|.+.|+.-+..|+.+++|+.+ .+.++.+. +.+-++|-+.. ..-++..++-+|..|.+..|. .....+-
T Consensus 118 nDL~srn~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD--l~~~~~W 188 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD--LVNPGEW 188 (938)
T ss_pred hhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc--ccChhhH
Confidence 33455777888889999999874 35555553 23335663333 345677888888888887543 3334566
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-------------CCChhhHHHHHHHHh
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-------------HPSQSVLTQALHTVG 169 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-------------~~~~~v~~~a~~~L~ 169 (383)
+..++.++.+.+..+...+...+..++.. .++........ .+..|..... -+.|.+....++.|.
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~-~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq 266 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKK-NPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQ 266 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHc-CCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHH
Confidence 78899999999999999999999999987 66555543322 2333333221 167888999999998
Q ss_pred hhhcCCCccccceecCCChHHHHHhhcccc---------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142 170 NIARGDYSQTLYIINCGALPYLLGLLIDNH---------KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~---------~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
++-.-.+.... ....+.+-.+|...+ +...+...++-.-+++.+-+..-+.+ ......|.+++.+
T Consensus 267 ~~p~~~D~~~r----~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~ 340 (938)
T KOG1077|consen 267 IYPTPEDPSTR----ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSH 340 (938)
T ss_pred hCCCCCCchHH----HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhc
Confidence 87422221111 112223333332110 22334445555556655433333333 2357788999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhch
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~ 304 (383)
....+|.-|...++.++... ..... ++.. ...++..|+ .+|..++..|+..|+-++....
T Consensus 341 rE~NiRYLaLEsm~~L~ss~--~s~da-vK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 341 RETNIRYLALESMCKLASSE--FSIDA-VKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred ccccchhhhHHHHHHHHhcc--chHHH-HHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 99999999999999999873 22222 2222 778888888 7799999999999999986544
No 103
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.9e-05 Score=72.25 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=147.3
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHH---HHHHhhcCCC---CCCC
Q 037142 22 FVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIAT---WTLSNLCGGK---PRPI 95 (383)
Q Consensus 22 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~---~~L~~l~~~~---~~~~ 95 (383)
+..+..+.|+.++.+|+..|..+... ....+.+ ....++++ ++.+..++..|+ |..+|.+-.+ ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~-----Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKAC-----YSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc-ccccHHH-----HHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 34444445555555555555444431 1222222 34567777 677788888774 5556666222 1122
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHhhhh--
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-HPSQSVLTQALHTVGNIA-- 172 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-~~~~~v~~~a~~~L~~l~-- 172 (383)
....-.++..+...+.+-...+|..|+.+|+.+-.- +.+.+....+..++..+-..-. +.-+.-. ..=+..+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms~lRRkr~ahkrpk~l----~s~GewSsG 350 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMSRLRRKRTAHKRPKAL----YSSGEWSSG 350 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhhhhhhhhhcccchHHH----HhcCCcccC
Confidence 334456777888888888999999999999887765 4455555444333331111100 0111111 0001011
Q ss_pred ---------cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142 173 ---------RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF 243 (383)
Q Consensus 173 ---------~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 243 (383)
...+.....++..|.-..++.-+.+. -.+||.+|+..++.|+..++..... .+..|++++++...
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHH
Confidence 11222334467778888899988888 8899999999999999988776654 46689999999999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC 292 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 292 (383)
.||..|..+|..++.+.. ++...++.++..|.+.++++++..
T Consensus 425 ~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999988876531 112234445555555555555433
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.18 E-value=2.6e-05 Score=75.93 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=154.4
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhc---CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC----
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAA---ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG---- 89 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~---- 89 (383)
.++|.++.++.++..++|..|+.+|..+.. +-+..-..+...=++|.|-.++.++....++..-+..|+.|+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 579999999999999999999999988753 1111112222233467777777433444444443444444321
Q ss_pred --------------CCCCC---C--------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC
Q 037142 90 --------------GKPRP---I--------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG 144 (383)
Q Consensus 90 --------------~~~~~---~--------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 144 (383)
+.+.. . ......+-.....++.++++-+++..+..|.-||..+...... .-
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN----D~ 617 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN----DV 617 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc----cc
Confidence 11111 0 0111334444556777778888888888888888542111111 13
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
+++.|+.+|.+.|+.++.+-...|..++-.-. ..-.+..++|.|.+-|.+. .+.|...|++++.-++...--.+..
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHH
Confidence 78899999999999999888887776653322 1124557889999999998 9999999999999998644222222
Q ss_pred HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
+ ..+++....++-+++..+|..++.+|......
T Consensus 694 v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 694 V--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred H--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2 33566777788899999999999999888754
No 105
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00041 Score=62.89 Aligned_cols=286 Identities=12% Similarity=0.177 Sum_probs=162.2
Q ss_pred CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHH
Q 037142 27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTL 106 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l 106 (383)
++.-+.++..+++.+..++..+ ...... ...+..|-.+| +++....+-.|+++|..++...|... ..+=+-+
T Consensus 274 s~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv----~vcN~ev 345 (898)
T COG5240 274 SDKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV----SVCNKEV 345 (898)
T ss_pred cCcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee----eecChhH
Confidence 3344678888888888877543 111111 12355666667 67788888899999999988765432 2233445
Q ss_pred HHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCC
Q 037142 107 AQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG 186 (383)
Q Consensus 107 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 186 (383)
-.++.+.+..+...|+..|..-. ..+.+..++. .++.+++=+.++-..+...+++.|+.. .+.... .
T Consensus 346 EsLIsd~Nr~IstyAITtLLKTG---t~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~---Fp~k~~-----s 412 (898)
T COG5240 346 ESLISDENRTISTYAITTLLKTG---TEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLL---FPSKKL-----S 412 (898)
T ss_pred HHHhhcccccchHHHHHHHHHcC---chhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhh---CcHHHH-----H
Confidence 56777777777666665554433 4456665543 244555544444444444444444433 332211 3
Q ss_pred ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 037142 187 ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIK 266 (383)
Q Consensus 187 ~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 266 (383)
.+..|...|.+...-+.+..++.+++.+....|+.++.. +..|...+.+. +..+-++..|+-+...+....-
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~- 484 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRAKT- 484 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC-
Confidence 355555555444366778888888888877766666544 33455555432 2223344444444433210000
Q ss_pred HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142 267 YLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK 346 (383)
Q Consensus 267 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~ 346 (383)
....+.++.+-+--++.-++..|+.||..+.-....- +........|.+++++++++|+++
T Consensus 485 ---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------------~~~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 485 ---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------------VSPQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred ---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------------ccHHHHHHHHHHHhhcccHHHHHH
Confidence 0112333333333456678888888887776432221 112233467789999999999999
Q ss_pred HHHHHHHhcCCCCC
Q 037142 347 SAKILETYWCGRVV 360 (383)
Q Consensus 347 a~~~l~~~~~~~~~ 360 (383)
|.-.+..+-..+.-
T Consensus 546 Asf~l~~~~~~da~ 559 (898)
T COG5240 546 ASFLLRNMRLSDAC 559 (898)
T ss_pred HHHHHHhhhhhhhh
Confidence 99888876654443
No 106
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.15 E-value=4.4e-05 Score=63.86 Aligned_cols=230 Identities=15% Similarity=0.110 Sum_probs=149.3
Q ss_pred CCCChHHHHHHHHHHHHHhcCChHHHHHHH-hcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCC-Chhhhhchh
Q 037142 27 ASPSDDIRMQSVWALGNIAAESPRFRDLVL-GEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRP-IFDQVRPCL 103 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i 103 (383)
+.-++-.+.-|+.++.++... ++.|+..- +...-..++..++++ .+.+++...+.++..+...+... .....-..+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334455677888999998865 46665543 333445677777433 25778888888888888765222 122234566
Q ss_pred HHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHhhhhcC-----
Q 037142 104 PTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---PSQSVLTQALHTVGNIARG----- 174 (383)
Q Consensus 104 ~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---~~~~v~~~a~~~L~~l~~~----- 174 (383)
..++++.+.. ...+.+-++..+.+++...+...+....-.|-+...++.|.. .|.+++...-..=..+..+
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 6677777644 577888899999999974133445544444434455555543 4555544332222111111
Q ss_pred -----------------CCccc--------cceec--CCChHHHHHhhccccchh-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037142 175 -----------------DYSQT--------LYIIN--CGALPYLLGLLIDNHKTS-IKNYACWIISNITAGNREQIQAVI 226 (383)
Q Consensus 175 -----------------~~~~~--------~~l~~--~~~i~~l~~ll~~~~~~~-~~~~a~~~l~nl~~~~~~~~~~~~ 226 (383)
+++.. ..+.+ ..+++.|..+++.. ++. ....||.-+..++...|+....+.
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11111 11111 13577888888887 555 566788889999999999999999
Q ss_pred hcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 227 DAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 227 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
+.|+=..++++++|++++||-+|..++..+..
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999877653
No 107
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00019 Score=66.81 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142 243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL 322 (383)
Q Consensus 243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (383)
.+.|..-..++..++.. -++.... +++.|++.+.+.++..-...+..+...++..++.+ ..
T Consensus 373 ~~yRqlLiktih~cav~-Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-------------~~ 433 (948)
T KOG1058|consen 373 GKYRQLLIKTIHACAVK-FPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-------------AS 433 (948)
T ss_pred hHHHHHHHHHHHHHhhc-ChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-------------HH
Confidence 34455666666666554 2333333 68888888888877666666666666665444321 11
Q ss_pred HHHhccHHHH-HHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 323 VEEAKGLEKI-ENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 323 l~~~~~~~~L-~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
+ +++| +.+-.-...++.+-|.+++-.|.+...
T Consensus 434 i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 434 I-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred H-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 1 1222 222333566677777777777777665
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.13 E-value=0.00086 Score=59.75 Aligned_cols=219 Identities=24% Similarity=0.289 Sum_probs=156.6
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
-.++.+..++.+.++.+|..|+.+|+.+-.. ..++.++.++..+++..++..+.++|+.+-...
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----- 137 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGELGDP-----------EAVPPLVELLENDENEGVRAAAARALGKLGDER----- 137 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----
Confidence 4688999999999999999999988887632 347889999955789999999999999987643
Q ss_pred hhhhchhHHHHHhhccCC------------HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142 97 DQVRPCLPTLAQLVHSND------------EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a 164 (383)
.+..+...+.+.. ..++..+...+..+-.. ..++.+...+.+.+..++..+
T Consensus 138 -----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~------------~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 138 -----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP------------EAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred -----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh------------hhhHHHHHHHhCchHHHHHHH
Confidence 3666667766654 13555555555555533 357888999999999999999
Q ss_pred HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142 165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY 244 (383)
Q Consensus 165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 244 (383)
..+|+.+.... ..+.+.+...+.+. +..++..++..++.+-... ..+.+...+...+..
T Consensus 201 a~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~ 259 (335)
T COG1413 201 ASALGQLGSEN---------VEAADLLVKALSDE-SLEVRKAALLALGEIGDEE-----------AVDALAKALEDEDVI 259 (335)
T ss_pred HHHHHHhhcch---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccCcch-----------hHHHHHHHHhccchH
Confidence 99999887554 24567888888888 9999999999998875422 345667777777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
++..+.......-. ......+...+.+....++..+..++..+..
T Consensus 260 ~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 260 LALLAAAALGALDL------------AEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHHhcccCc------------hhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 77666666551110 0123445555555666666666666655543
No 109
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00057 Score=64.16 Aligned_cols=275 Identities=18% Similarity=0.154 Sum_probs=184.7
Q ss_pred hHHHHHHhcCCCChhHHHHHHH-HHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATW-TLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA 139 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (383)
-..|.++| ++.....+..|+. +++.++.+. ..+..+|.+++...+++.++++-+---|...++. .+ +...
T Consensus 37 ~~dL~~lL-dSnkd~~KleAmKRIia~iA~G~------dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe-qp-dLAL 107 (968)
T KOG1060|consen 37 HDDLKQLL-DSNKDSLKLEAMKRIIALIAKGK------DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE-QP-DLAL 107 (968)
T ss_pred hHHHHHHH-hccccHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-CC-Ccee
Confidence 35688899 5555555556655 555566553 2677999999999999999999998888888876 22 2222
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142 140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
+ -+..+-+-|+++|+.++..|+++|..+=- . ++..-.+-.+-++..+. .+.||+.|+.++-.+=.-.+
T Consensus 108 L----SIntfQk~L~DpN~LiRasALRvlSsIRv------p-~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 108 L----SINTFQKALKDPNQLIRASALRVLSSIRV------P-MIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred e----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------h-hHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCCh
Confidence 2 36788899999999999999988876521 0 11111223334455566 89999999999999877666
Q ss_pred HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037142 220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l 299 (383)
+....+ +..+-.+|.+.++.|...|+.+.-.+| ++....+.. -...|+.++.+-+.--|...+..|.+.
T Consensus 176 e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evC----PerldLIHk--nyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 176 EQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVC----PERLDLIHK--NYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred hhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhc----hhHHHHhhH--HHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 666544 446777888999999999999998887 455665543 578899999887776677788888887
Q ss_pred HHhchhcccCcC-----------------CCCcc---cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 300 LKVGEAEKNTDT-----------------DIGDV---NQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 300 ~~~~~~~~~~~~-----------------~~~~~---~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
++..-....... .+..+ +.-.++| ++....|+.+.++.|...+.++...+....+
T Consensus 245 AR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lL-----L~stkpLl~S~n~sVVmA~aql~y~lAP~~~ 319 (968)
T KOG1060|consen 245 ARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLL-----LQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ 319 (968)
T ss_pred HHhcCCCccccccccccCcccccccccccccCCCcccCccHHHH-----HHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence 764322210000 00011 1112222 2445567778888888888877776666654
Q ss_pred C----CCCccccccccc
Q 037142 360 V----GPQPGLLYAGNE 372 (383)
Q Consensus 360 ~----~~~~~~~~~~~~ 372 (383)
. +++.+++|+-.+
T Consensus 320 ~~~i~kaLvrLLrs~~~ 336 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNRE 336 (968)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 3 667777766443
No 110
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.10 E-value=9.3e-06 Score=56.59 Aligned_cols=87 Identities=26% Similarity=0.356 Sum_probs=70.5
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
++.|++.|.+++++.++..++++|+.+. ....++.+..+++++++.++..++++|..+...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~--------- 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGDP--------- 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---------
Confidence 5789999967889999999999999543 235799999999999999999999999987522
Q ss_pred HHhCcHHHHHHhcCCCC-hhhHHHHHHHHh
Q 037142 141 IEAGVCPRLVKLLGHPS-QSVLTQALHTVG 169 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~~~-~~v~~~a~~~L~ 169 (383)
..++.|.+++.+++ ..++..+..+|+
T Consensus 62 ---~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 ---EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 36889999998854 556888888774
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.09 E-value=1.1e-05 Score=56.18 Aligned_cols=87 Identities=29% Similarity=0.420 Sum_probs=70.5
Q ss_pred hHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccc
Q 037142 103 LPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181 (383)
Q Consensus 103 i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 181 (383)
+|.|++.+ +++++.++..++++|+.+... ..++.+..+++++++.++..++.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57888888 788999999999999855321 25799999999999999999999999873
Q ss_pred eecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142 182 IINCGALPYLLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
....++.|..++.++.+..+|..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12468899999988746677999988875
No 112
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00055 Score=65.32 Aligned_cols=138 Identities=19% Similarity=0.187 Sum_probs=103.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR 100 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 100 (383)
-+++...+.|.+++...-.-|.+++...|+.... .+..+.+-+ +++|+.+|..|+++++.+-.. ....
T Consensus 59 dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl-~d~N~~iR~~AlR~ls~l~~~------el~~ 126 (757)
T COG5096 59 DVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDL-QDPNEEIRGFALRTLSLLRVK------ELLG 126 (757)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhc-cCCCHHHHHHHHHHHHhcChH------HHHH
Confidence 3344444556666666666666666555532222 245666677 789999999999999886543 5668
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
.+++.+.+++.++++.+|+.|+.++..+-+- ++ ..+.+.|.+..+..++.++||.+...|+.++..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999999999999999966 33 3344557888888899999999999999999988643
No 113
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=98.09 E-value=1.1e-05 Score=46.89 Aligned_cols=39 Identities=41% Similarity=0.744 Sum_probs=36.8
Q ss_pred hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh
Q 037142 7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIA 45 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~ 45 (383)
++++..+++.|+++.|++++.+++++++..|+|+|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999999999987
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.08 E-value=4.7e-05 Score=63.72 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=118.5
Q ss_pred cCCCChhHHHHHHHHHHhhcCCC-CCCChhh----hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh
Q 037142 69 NNHENLSMKRIATWTLSNLCGGK-PRPIFDQ----VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA 143 (383)
Q Consensus 69 ~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~----~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 143 (383)
.++.+.+.+..++.-|..++... +...... ...++..+...+.+....+...++.++..++.. .........+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~-l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ-LGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH-HGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhHhHHHHHHH
Confidence 35678899999999999988776 2221111 234556777788888889999999999999976 44445555554
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCC-hHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142 144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA-LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222 (383)
Q Consensus 144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~ 222 (383)
++|.|+..+.+++..++..+..+|..++...+.. ..+ ++.+.....+. ++.+|..++..+..+....+...
T Consensus 95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----
T ss_pred -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchH
Confidence 8899999999999999999999999998755411 123 56666777788 99999999999998876554111
Q ss_pred HHHH----hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 223 QAVI----DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 223 ~~~~----~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
..+- -..+.+.+...+.++++++|..|-.++..+...
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 134677888889999999999998888887544
No 115
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0011 Score=54.31 Aligned_cols=255 Identities=17% Similarity=0.241 Sum_probs=161.7
Q ss_pred hHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 19 VPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 19 i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
+..+.+.|.. ....-+..|+..|.++... +.+..+.+.. .+.+...+...+.+|+......
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~~----- 67 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAF-IDDSALLKHELAYVLGQMQDED----- 67 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhc-ccchhhhccchhhhhhhhccch-----
Confidence 3445555543 2334455566666666532 2255566665 3445667778888888877543
Q ss_pred hhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 97 DQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
.+|.+...+.+. .+-+|..+..+|..+... ...+.+-++.+++...|+..+..++..+-..
T Consensus 68 -----Av~~l~~vl~desq~pmvRhEAaealga~~~~------------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 68 -----AVPVLVEVLLDESQEPMVRHEAAEALGAIGDP------------ESLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred -----hhHHHHHHhcccccchHHHHHHHHHHHhhcch------------hhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 788899888855 478889999999988833 3456666777777777777777777666421
Q ss_pred CCcc----cccee--------cCCChHHHHHhhc-cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142 175 DYSQ----TLYII--------NCGALPYLLGLLI-DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241 (383)
Q Consensus 175 ~~~~----~~~l~--------~~~~i~~l~~ll~-~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 241 (383)
+.-. ...+. ..+-+..+-..+. .+...--|..+.+.|.|+.. ++. +..+.+-+..+
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Eea---------I~al~~~l~~~ 199 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EEA---------INALIDGLADD 199 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HHH---------HHHHHHhcccc
Confidence 1100 00011 1122333333333 33123345667777777632 232 33445556667
Q ss_pred chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142 242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY 319 (383)
Q Consensus 242 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 319 (383)
+.-.|.+++++++++-+.. .++.|.+.|. .+++-+|..|..||.-+.
T Consensus 200 SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa------------------- 248 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIA------------------- 248 (289)
T ss_pred hHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc-------------------
Confidence 8889999999999997542 3666666654 357889999999998765
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
....++.|+++.+.+.+-|++.|.-.++-+
T Consensus 249 -----~e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 249 -----DEDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -----CHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 333467788999999999999998887643
No 116
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00076 Score=65.56 Aligned_cols=260 Identities=14% Similarity=0.131 Sum_probs=164.9
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
++++.|...+++.|..++=.|+..++.++...| +..+ .++...++++..-++...-+.++-+|+.++... -..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-----~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLl 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-----QVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLL 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-----HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccc
Confidence 577888888899999999999999999997655 2222 345666776643345666778999999999865 112
Q ss_pred hhhhhchhHHHHHhhc--------cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142 96 FDQVRPCLPTLAQLVH--------SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT 167 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~ 167 (383)
......++|.+.+-+. +....+|..||.+++.+++.+.+...+.+...-.-..+...+.+.+-+.+.+|..+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 2334567777777665 23468999999999999987333333433332122234455677888999999988
Q ss_pred HhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHH-hhcCchhHH
Q 037142 168 VGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNL-LQNAVFYIK 246 (383)
Q Consensus 168 L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~ 246 (383)
+....--..+.. .+++.+ .....- .-..+.++...+..-.+..+..++.++++ ++.. +.+=+..+|
T Consensus 495 lqE~VGR~~n~p------~Gi~Li-s~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 495 LQENVGRQGNFP------HGISLI-STIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHhccCCCCC------Cchhhh-hhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHH
Confidence 876652211110 122221 222211 23345555666665555555666655543 2222 445588999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142 247 KEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 247 ~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~ 300 (383)
..++++|.+++.. ..+......++++++...+.+...+..+..+...++
T Consensus 562 elaa~aL~~Ls~~-----~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 562 ELAAYALHKLSLT-----EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHHHh-----hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 9999999998754 233344568888998888888776665544444443
No 117
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.004 Score=58.75 Aligned_cols=314 Identities=16% Similarity=0.201 Sum_probs=182.0
Q ss_pred CccCCChHHHHHHH-------h--CC----ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHH
Q 037142 1 SIASKTLEDKKAVV-------D--HG----AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ 67 (383)
Q Consensus 1 n~~~~~~~~~~~~~-------~--~g----~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~ 67 (383)
|+|+++.|.++.+. + .+ -|..|.+-|+++++.+|--|+++|..+=- .++..=++-.+-++
T Consensus 79 NVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~ 151 (968)
T KOG1060|consen 79 NVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKA 151 (968)
T ss_pred HhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHH
Confidence 67888888776543 1 12 27788888899999999888888775531 11100001122233
Q ss_pred hcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHH
Q 037142 68 LNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCP 147 (383)
Q Consensus 68 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~ 147 (383)
. .++.+-+|..|+.++-.+-.-.+. ....++..+-.++.+.++-+.-.|..++..+| ++..+.+-. -..
T Consensus 152 ~-~D~s~yVRk~AA~AIpKLYsLd~e----~k~qL~e~I~~LLaD~splVvgsAv~AF~evC----PerldLIHk--nyr 220 (968)
T KOG1060|consen 152 V-TDPSPYVRKTAAHAIPKLYSLDPE----QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVC----PERLDLIHK--NYR 220 (968)
T ss_pred h-cCCcHHHHHHHHHhhHHHhcCChh----hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhc----hhHHHHhhH--HHH
Confidence 3 677889999999999888765432 22367788888999999999999999999998 345555533 467
Q ss_pred HHHHhcCCCChhhHHHHHHHHhhhhcCC---Cccccc----------------------eecCC---ChHHHHHhhcccc
Q 037142 148 RLVKLLGHPSQSVLTQALHTVGNIARGD---YSQTLY----------------------IINCG---ALPYLLGLLIDNH 199 (383)
Q Consensus 148 ~l~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~~~~----------------------l~~~~---~i~~l~~ll~~~~ 199 (383)
.+..+|.+-+..-+..++..|...+.+. +..... ..+.+ ++...-.++.+.
T Consensus 221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~- 299 (968)
T KOG1060|consen 221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR- 299 (968)
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-
Confidence 8888888866666666777776666321 100000 00100 123334566677
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC----------------CCHH
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG----------------GTHE 263 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~----------------~~~~ 263 (383)
++.+..+++.+...++..+. . ..++..|+.+|.++ ..+|......|..++.. .++.
T Consensus 300 n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~ 371 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT 371 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence 88899999999988875431 1 23456677766543 23333333333333321 0111
Q ss_pred HHH--------HHHHcC----ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH
Q 037142 264 QIK--------YLEREG----CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK 331 (383)
Q Consensus 264 ~~~--------~l~~~~----~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (383)
+.. .+.... +++-+..-.++.|.++...++.+|..+....... ..-.+.-
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv------------------~~tCL~g 433 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV------------------TDTCLNG 433 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch------------------hhHHHHH
Confidence 111 111111 1222222333444455555666666665433221 2234566
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 332 IENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 332 L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
|..++.+.+..|...+...|..+...+-
T Consensus 434 Lv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 434 LVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 6777777777777777777777766553
No 118
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=0.00024 Score=68.21 Aligned_cols=316 Identities=16% Similarity=0.098 Sum_probs=208.4
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc--CCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037142 11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA--ESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL 87 (383)
Q Consensus 11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~--~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l 87 (383)
+....+++++.+.++..+..+.++..|...+.++.. +.+ +..+ .+.+.+++.. ++.+..++.........+
T Consensus 270 ~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~-----~~~~~l~~~~-~d~~~~v~~~~~~~~~~L 343 (759)
T KOG0211|consen 270 SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK-----SLTESLVQAV-EDGSWRVSYMVADKFSEL 343 (759)
T ss_pred HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh-----hhhHHHHHHh-cChhHHHHHHHhhhhhhH
Confidence 477888999999999999888999999988888774 222 2222 2234455544 333333333222222111
Q ss_pred ---------------------------------------cCCC--CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHH
Q 037142 88 ---------------------------------------CGGK--PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS 126 (383)
Q Consensus 88 ---------------------------------------~~~~--~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~ 126 (383)
+... +.........++|.+..+..+.++.++...+..+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 344 SSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred HHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 1111 01111223455677777777888888888887777
Q ss_pred HhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHH
Q 037142 127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNY 206 (383)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~ 206 (383)
.+.-. .+ ....++ ...|.+...+++.++.|+......+..+-..++..-........++.+..+-... ...++.+
T Consensus 424 ~~~p~-~~--k~~ti~-~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~a 498 (759)
T KOG0211|consen 424 GLSPI-LP--KERTIS-ELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLA 498 (759)
T ss_pred ccCcc-CC--cCcCcc-ccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHH
Confidence 77643 11 111122 3678888899999999999988777666544443333344556677788777776 7889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 037142 207 ACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP 286 (383)
Q Consensus 207 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 286 (383)
.++.+-.++.... ..+++...-+.+...+.+....+++.|+..+.-++...+.+ . .....++.++.+...++.
T Consensus 499 il~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---w-~~~~~i~k~L~~~~q~~y 571 (759)
T KOG0211|consen 499 ILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE---W-ARLEEIPKLLAMDLQDNY 571 (759)
T ss_pred HHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc---h-hHHHhhHHHHHHhcCccc
Confidence 9999988875432 44455556666777777888999999999998887653311 1 112357777777766677
Q ss_pred HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 287 QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 287 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
..|...+.++..++...++. +.....++.+.++..++.++|+-.+.+.+..+...-..
T Consensus 572 ~~R~t~l~si~~la~v~g~e----------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 572 LVRMTTLFSIHELAEVLGQE----------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred chhhHHHHHHHHHHHHhccH----------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 78888888888777765543 33444578889999999999999999988887766553
No 119
>PF05536 Neurochondrin: Neurochondrin
Probab=97.97 E-value=0.0024 Score=60.11 Aligned_cols=237 Identities=16% Similarity=0.079 Sum_probs=156.8
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC----hhhhhchhHHHHHhhcc-------CCHHHHHHHHHHHHHhc
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI----FDQVRPCLPTLAQLVHS-------NDEHVMSNACWGLSLLC 129 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~i~~l~~ll~~-------~~~~~~~~~~~~l~~l~ 129 (383)
+...+++| +..+.+-+-.++..+.+++...+... .....-+.+.+-+++.+ +....+.-++..|..+|
T Consensus 7 l~~c~~lL-~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLL-KSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHh-ccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45667777 45554456667777778777653221 12334567788888886 23566777888888888
Q ss_pred cCCCch-HHHHHHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHH
Q 037142 130 DGGKND-EIQAVIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYA 207 (383)
Q Consensus 130 ~~~~~~-~~~~~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a 207 (383)
.. +.- ....+.. -+|.++..+.+.+. .+...++.+|..++ ..++..+.+++.|.++.|.+.+.+ .+.....+
T Consensus 86 ~~-~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 RD-PELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred CC-hhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 75 221 1133443 58999999988766 99999999999999 556677789999999999999876 45678889
Q ss_pred HHHHHHHhcCCHHHHHH---HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHH----HHHHHHHcCChHHHHhh
Q 037142 208 CWIISNITAGNREQIQA---VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHE----QIKYLEREGCIKPLCDL 280 (383)
Q Consensus 208 ~~~l~nl~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~----~~~~l~~~~~i~~L~~l 280 (383)
+.++.+++......... -.-..+++.+...+.......+-+++..|..+....+.. ....-.-..+...+.++
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 99998887643211100 001234566666666667778888899999998764211 01111112355566677
Q ss_pred cCCC-CHHHHHHHHHHHHHHHHhch
Q 037142 281 LLCP-DPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 281 l~~~-~~~v~~~al~~l~~l~~~~~ 304 (383)
++++ .+.-|..++.....++...+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 7765 45667778888877777633
No 120
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=1.3e-05 Score=50.13 Aligned_cols=55 Identities=27% Similarity=0.492 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 201 TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 201 ~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
+.+|..|+++|++++...+..... ....+++.|..++.+++..||..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998877666665 4456899999999998889999999999875
No 121
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.91 E-value=0.00057 Score=59.76 Aligned_cols=227 Identities=13% Similarity=0.066 Sum_probs=157.2
Q ss_pred HHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh----hhh----hchhHHHHHhhccCCHHHHHHHHH
Q 037142 52 RDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF----DQV----RPCLPTLAQLVHSNDEHVMSNACW 123 (383)
Q Consensus 52 ~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~----~~~i~~l~~ll~~~~~~~~~~~~~ 123 (383)
...+...+.+..|+..| ..-+-+.+..+..+..++.+....... ... ..++..|+...+ ++++...+..
T Consensus 69 a~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ 145 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGD 145 (335)
T ss_dssp HHHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHH
T ss_pred HHHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHH
Confidence 34456778888999998 677889999999999999988733321 111 234444444444 5566667777
Q ss_pred HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC---CChHHHHHhhccccc
Q 037142 124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC---GALPYLLGLLIDNHK 200 (383)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~~ 200 (383)
.|...++. ....+.+.....+..++..+..++-++...|..++..+..........++.. .++.....++.++ +
T Consensus 146 mlRec~k~--e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-N 222 (335)
T PF08569_consen 146 MLRECIKH--ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-N 222 (335)
T ss_dssp HHHHHTTS--HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-S
T ss_pred HHHHHHhh--HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-C
Confidence 78888876 5666777777888999999999999999999999999876655454445543 3566778888888 9
Q ss_pred hhHHHHHHHHHHHHhcCC--HHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHH--cCC
Q 037142 201 TSIKNYACWIISNITAGN--REQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG--THEQIKYLER--EGC 273 (383)
Q Consensus 201 ~~~~~~a~~~l~nl~~~~--~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~--~~~ 273 (383)
.-+++.++..|+.+.... -......+ +..-+..++.+|.+.+..++-+|..++--+..+. +++....+.. ..+
T Consensus 223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kL 302 (335)
T PF08569_consen 223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKL 302 (335)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHH
T ss_pred eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 999999999999997543 23333333 5667999999999999999999999998888775 3343344333 245
Q ss_pred hHHHHhhcCCC
Q 037142 274 IKPLCDLLLCP 284 (383)
Q Consensus 274 i~~L~~ll~~~ 284 (383)
+..|-++..+.
T Consensus 303 l~fl~~f~~~~ 313 (335)
T PF08569_consen 303 LRFLKDFHTDR 313 (335)
T ss_dssp HHHHHTTTTT-
T ss_pred HHHHHhCCCCC
Confidence 66666655544
No 122
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.87 E-value=0.00013 Score=51.24 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC
Q 037142 203 IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL 282 (383)
Q Consensus 203 ~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 282 (383)
.|+.++..|+.++.+-+......+ ..++++++..+.+++.+||..||.+|.|++.....+....+ ..+++.|.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence 366777888887665444443333 34889999999999999999999999999876444444443 348999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 037142 283 CPDPQIVTVCLKALENILK 301 (383)
Q Consensus 283 ~~~~~v~~~al~~l~~l~~ 301 (383)
+.++.|+..| ..|-++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999988755 66666653
No 123
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.87 E-value=0.00083 Score=51.20 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=105.9
Q ss_pred HHHHHhCcHHHHHHhcCCCC------hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHH
Q 037142 138 QAVIEAGVCPRLVKLLGHPS------QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWI 210 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~ 210 (383)
..++..++++.|++++.++. .++...++.++..|..+.- ..-..++..++..+...+.... +..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45667788999999998854 4888899999999998753 2233566678889998887653 68899999999
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 037142 211 ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLE 269 (383)
Q Consensus 211 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~ 269 (383)
|-+++..++.....+-+.=-++.|+..++.++++++..|...+-.+....++...+.+.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99999988777777777777999999999999999999999999888777666665443
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=7.3e-05 Score=46.68 Aligned_cols=55 Identities=29% Similarity=0.480 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l 171 (383)
+.+|..++++|.+++.. ..+....... .+++.|..+|+++++.|+..++++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999999877 5555555444 4899999999999999999999999875
No 125
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0054 Score=59.41 Aligned_cols=280 Identities=14% Similarity=0.145 Sum_probs=167.4
Q ss_pred CChHHHHHhhC------C--CChHHHHHHHHHHHHHhc---CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142 17 GAVPIFVKLLA------S--PSDDIRMQSVWALGNIAA---ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS 85 (383)
Q Consensus 17 g~i~~L~~lL~------~--~~~~i~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~ 85 (383)
|+++.+++.|. . .++.-.+-|+..++++++ ..+.++ ..++.-+++.++-.+ +++--.++..|+|+++
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f-~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEF-QSPYGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhh-cCchhHHHHHHHHHHH
Confidence 56666677776 2 345666778888888873 121222 223344456666677 6777789999999999
Q ss_pred hhcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCCCChhhHH
Q 037142 86 NLCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPSQSVLT 162 (383)
Q Consensus 86 ~l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~~~~~v~~ 162 (383)
.++.-. ..+......++....+++. +++..++..++.+|..+..+ .......+..+ ++++.++.+.+.-+.+...
T Consensus 488 ~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~-~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 488 QFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN-QEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc-chhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 999553 3444556778888888888 77899999999999999877 33222222221 3566667777765545555
Q ss_pred HHHHH-HhhhhcCCCccccceecCCChHHHHHhhcc---c--cchhHHHHHHHHHHHHhc------CCHHHHHHHHhcCC
Q 037142 163 QALHT-VGNIARGDYSQTLYIINCGALPYLLGLLID---N--HKTSIKNYACWIISNITA------GNREQIQAVIDAGL 230 (383)
Q Consensus 163 ~a~~~-L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~---~--~~~~~~~~a~~~l~nl~~------~~~~~~~~~~~~~~ 230 (383)
..+.. ++.++..-....-.+.+ .+.....+++.+ . .+..=...|.++|..+.. ..++..+. ++..+
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~ 643 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIV 643 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence 44443 34443322222111221 344556666653 1 122334445555544431 22222222 23445
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
++.+-.++.+.-.++-++++..+..++... ++--..+.+ +.+.+.+.++....+.-....-+|.|++..+..
T Consensus 644 l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 644 LPVIGFILKNDITDFYEELLEIVSSLTFLS-KEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence 666666677777778888888777776542 222223333 677777777777666677777778888777665
No 126
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.79 E-value=0.00013 Score=51.16 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC
Q 037142 77 KRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP 156 (383)
Q Consensus 77 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~ 156 (383)
|.-++.+|+..+..-+.........++|.++..+.++|..+|..+|.+|++++.. ..+..-.... .+++.|.+++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~-~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFN-EIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHcCC
Confidence 4566777777766654555556688999999999999999999999999999976 3332222222 4788999999999
Q ss_pred ChhhHHHHH
Q 037142 157 SQSVLTQAL 165 (383)
Q Consensus 157 ~~~v~~~a~ 165 (383)
+++|+..|.
T Consensus 81 d~~Vr~~a~ 89 (97)
T PF12755_consen 81 DENVRSAAE 89 (97)
T ss_pred chhHHHHHH
Confidence 999887763
No 127
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.74 E-value=0.0072 Score=55.67 Aligned_cols=255 Identities=15% Similarity=0.087 Sum_probs=158.8
Q ss_pred CCChHHHHHHHhCCChHHHHHhh----------CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC--
Q 037142 4 SKTLEDKKAVVDHGAVPIFVKLL----------ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-- 71 (383)
Q Consensus 4 ~~~~~~~~~~~~~g~i~~L~~lL----------~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-- 71 (383)
++++.....+.....+..|.++- ...++.+...|++||.|+...++..|..+.+.|..+.++..|+..
T Consensus 9 sRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~ 88 (446)
T PF10165_consen 9 SRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSD 88 (446)
T ss_pred ccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccc
Confidence 45566666666666677776665 237899999999999999999999999999999999999999643
Q ss_pred --CChhHHHHHHHHHHhhcCCCCCCChhh--hhchhHHHHHhh----cc-------------CCHHHHHHHHHHHHHhcc
Q 037142 72 --ENLSMKRIATWTLSNLCGGKPRPIFDQ--VRPCLPTLAQLV----HS-------------NDEHVMSNACWGLSLLCD 130 (383)
Q Consensus 72 --~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~l~~ll----~~-------------~~~~~~~~~~~~l~~l~~ 130 (383)
.+.++.-...++|.-++...+...... ..+++..+...+ .. .+.+....++..+.|+..
T Consensus 89 ~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~ 168 (446)
T PF10165_consen 89 SSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITL 168 (446)
T ss_pred cCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhh
Confidence 256666667777776665543322122 134555544433 21 145667888899999987
Q ss_pred CCCchHHH-HHHH--hCcHHHHHHhcC---C--CChhhHHHHHHHHhhhhcCCCcc-----------ccceecCCChHHH
Q 037142 131 GGKNDEIQ-AVIE--AGVCPRLVKLLG---H--PSQSVLTQALHTVGNIARGDYSQ-----------TLYIINCGALPYL 191 (383)
Q Consensus 131 ~~~~~~~~-~~~~--~~~i~~l~~~L~---~--~~~~v~~~a~~~L~~l~~~~~~~-----------~~~l~~~~~i~~l 191 (383)
. .+.... .... ..++..+..++. . +.......+..+|.++-...... .-.......+..+
T Consensus 169 ~-~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~L 247 (446)
T PF10165_consen 169 H-YPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERL 247 (446)
T ss_pred c-cCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHH
Confidence 6 332221 1111 013344444421 1 33456777778887773211111 0011223456666
Q ss_pred HHhhcc----cc---chhHHHHHHHHHHHHhcCCHHHHHHHHh----------------cCChHHHHHHhhcCchhHHHH
Q 037142 192 LGLLID----NH---KTSIKNYACWIISNITAGNREQIQAVID----------------AGLIGPLVNLLQNAVFYIKKE 248 (383)
Q Consensus 192 ~~ll~~----~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~v~~~ 248 (383)
+.+|.. .. -.......+.+|.+++..+...+..+.. ..+-..|+.++.++.+.+|..
T Consensus 248 l~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~ 327 (446)
T PF10165_consen 248 LDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDA 327 (446)
T ss_pred HHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHH
Confidence 666642 10 1245667888888888876555444432 123456888888888899999
Q ss_pred HHHHHHHhcCC
Q 037142 249 AAWAISNATFG 259 (383)
Q Consensus 249 a~~~l~~l~~~ 259 (383)
+...+..+|..
T Consensus 328 vaellf~Lc~~ 338 (446)
T PF10165_consen 328 VAELLFVLCKE 338 (446)
T ss_pred HHHHHHHHHhh
Confidence 98888888744
No 128
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.01 Score=58.80 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=146.2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHH
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCP 147 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~ 147 (383)
++.+..++..+..+|..++...+.. .......+...+.+-+++.+...+...+.++..+....+.+....+.. .++
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence 4447789999999999999874222 222335566667777777788888888888888887612233333333 345
Q ss_pred HHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCC------ChHHHHHhhc----cccchhHHHHHHHHHHHHhcC
Q 037142 148 RLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG------ALPYLLGLLI----DNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 148 ~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~------~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~ 217 (383)
.++-.+++.|...+..+..+|..++. ++...+.| .+..++..+. .+ ...+....+.++..+...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHH
Confidence 55555588888899999998888872 11111111 3333333332 33 333333335566666543
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297 (383)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~ 297 (383)
.........-.++++.+..++.++++++++.|+.++..++...+........ ..+++.++.+.++....++..+...+.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222222222345566666777899999999999999999876555544432 247888889888888899999999999
Q ss_pred HHHHhch
Q 037142 298 NILKVGE 304 (383)
Q Consensus 298 ~l~~~~~ 304 (383)
.+++..+
T Consensus 895 kLirkfg 901 (1176)
T KOG1248|consen 895 KLIRKFG 901 (1176)
T ss_pred HHHHHhC
Confidence 9988655
No 129
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0021 Score=60.11 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=112.8
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
++=+.+-+++.+.|+-+|.....++.---.+ ..+ .+.+..|++. .++.|++|+.+|.-+|+.++..+++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G--Tgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVG--TGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhc--cCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--
Confidence 4556677788888888888776665432222 111 1356777777 6778999999999999999876663
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
..+..+++|+...++.||..+..+|+-.|++.... ..+..|-.+..++..-||+.|+.+++-+...
T Consensus 589 -------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 589 -------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred -------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 36667788877769999999999999988875321 1344555666778888999999998888765
Q ss_pred CCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 037142 260 GTHEQIKYLEREGCIKPLCDLLLCPDPQIV 289 (383)
Q Consensus 260 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 289 (383)
.++...... .++.+.+.+.+.+++.+..
T Consensus 655 ~t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 655 QTEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred cccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 543333331 2456667777766655443
No 130
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.70 E-value=0.032 Score=51.23 Aligned_cols=313 Identities=17% Similarity=0.150 Sum_probs=171.0
Q ss_pred hHHHHHhhCCCCh---HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-
Q 037142 19 VPIFVKLLASPSD---DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP- 94 (383)
Q Consensus 19 i~~L~~lL~~~~~---~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~- 94 (383)
+|.|+..|.+.++ .-...++.+|..++....-+..... ..+..+........+......++.++.++.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 4678888877544 6788899999999976543333322 444444444433446667777777887776654211
Q ss_pred ---Chhhh--hchhHHHHHhhcc-----C--CHHHHHHHHHHHHHhccCCCchHHHHHHHh-------------------
Q 037142 95 ---IFDQV--RPCLPTLAQLVHS-----N--DEHVMSNACWGLSLLCDGGKNDEIQAVIEA------------------- 143 (383)
Q Consensus 95 ---~~~~~--~~~i~~l~~ll~~-----~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~------------------- 143 (383)
..... ..++|.+...... . ++.+...+...+..+.+..+.+..+.+.+.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~ 158 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSS 158 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccc
Confidence 12222 2266666665531 1 244444444444444443222222222210
Q ss_pred -------C-----------------------cHHHHHHhcC-CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHH
Q 037142 144 -------G-----------------------VCPRLVKLLG-HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLL 192 (383)
Q Consensus 144 -------~-----------------------~i~~l~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~ 192 (383)
. ++..++.+.. .+++..+..++++++.++...+... .. ..+++.+.
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~ 235 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLL 235 (415)
T ss_pred ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHH
Confidence 0 1222222221 2345556666666666664321111 00 02233333
Q ss_pred Hhh-ccccchhHHHHHH----HHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC------
Q 037142 193 GLL-IDNHKTSIKNYAC----WIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG------ 260 (383)
Q Consensus 193 ~ll-~~~~~~~~~~~a~----~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~------ 260 (383)
..+ ... .+..+..++ |+...+.. +++. .. .++..|+.++.+ +++...|+..+.-+....
T Consensus 236 ~~~~~~~-~~~~~~~~~~~~~Wi~KaLv~R~~~~-~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~ 306 (415)
T PF12460_consen 236 QSISSSE-DSELRPQALEILIWITKALVMRGHPL-AT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNK 306 (415)
T ss_pred hhhcccC-CcchhHHHHHHHHHHHHHHHHcCCch-HH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCc
Confidence 333 122 333344443 34433333 3322 21 234567777765 667778888887776651
Q ss_pred -CHHHHHHHHHc----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH
Q 037142 261 -THEQIKYLERE----GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL 335 (383)
Q Consensus 261 -~~~~~~~l~~~----~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l 335 (383)
+....+.+.+. .++|.|++..+..+.+.+...+.||..+++..+... +...+. ..++.|.+-
T Consensus 307 ~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v-----------l~~~l~--~LlPLLlqs 373 (415)
T PF12460_consen 307 ENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV-----------LLPELP--TLLPLLLQS 373 (415)
T ss_pred cccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH-----------HHHHHH--HHHHHHHHH
Confidence 12334444443 357777777777777788889999999998766432 222222 245777777
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCC
Q 037142 336 QRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 336 ~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
++.++.+++..+..++..+..+.
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHcC
Confidence 88999999999999999888776
No 131
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0033 Score=57.24 Aligned_cols=194 Identities=15% Similarity=0.071 Sum_probs=103.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 141 (383)
|.|-.+| ++.-+.+.-.+++.+..++..+ .........+..|-.++++.....|-.|...|..++-. .+..+. .
T Consensus 267 pfL~~wl-s~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~-~P~kv~-v- 340 (898)
T COG5240 267 PFLNSWL-SDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK-YPQKVS-V- 340 (898)
T ss_pred HHHHHHh-cCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh-CCceee-e-
Confidence 4445555 3433455556666666666543 22334566777777788888888888888888888865 222221 1
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH
Q 037142 142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221 (383)
Q Consensus 142 ~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~ 221 (383)
+-+.+=.++.+.+..+...|...|.. .+.++.+..+ +..+..++++- +...+.-++.++..++..-+.-
T Consensus 341 ---cN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrL-----v~~I~sfvhD~-SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 341 ---CNKEVESLISDENRTISTYAITTLLK--TGTEETIDRL-----VNLIPSFVHDM-SDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred ---cChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHH-----HHHHHHHHHhh-ccCceEEeHHHHHHHHhhCcHH
Confidence 23445556666677776666655533 3444444322 22333333333 3334444444444444333332
Q ss_pred HHHHHhcCChHHHHHHh-hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC
Q 037142 222 IQAVIDAGLIGPLVNLL-QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC 283 (383)
Q Consensus 222 ~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 283 (383)
...+ +..|...| +.+..+.|+.++.+|..+..+. ++.... .+..|+..+.+
T Consensus 410 ~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~-p~skEr-----aLe~LC~fIED 461 (898)
T COG5240 410 KLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMEND-PDSKER-----ALEVLCTFIED 461 (898)
T ss_pred HHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhC-chHHHH-----HHHHHHHHHhh
Confidence 3222 33444444 3456777777777777777663 333333 34556666643
No 132
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0016 Score=65.64 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=111.6
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
..++|.|.+.=.+++..++..-...-..|... +..-...... .++..|+.-|.+..++|++++|.+|..|..+.+...
T Consensus 997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred HHhhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence 45666666666688877765544444444433 2333333333 478888889999999999999999999998765321
Q ss_pred cceecC--CChHHHHHhhccccchhHHHHH---HHHHHHHhcC-----CHHHHHHHHhcCChHHHHHH-hhcCchhHHHH
Q 037142 180 LYIINC--GALPYLLGLLIDNHKTSIKNYA---CWIISNITAG-----NREQIQAVIDAGLIGPLVNL-LQNAVFYIKKE 248 (383)
Q Consensus 180 ~~l~~~--~~i~~l~~ll~~~~~~~~~~~a---~~~l~nl~~~-----~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~ 248 (383)
+.+. .+-..+...+.+- .+.+|+.| +.+++.++.. ++.....++ ..++|.|++= +-+.-.++|+-
T Consensus 1075 --~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~ 1150 (1702)
T KOG0915|consen 1075 --VKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRF 1150 (1702)
T ss_pred --HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHH
Confidence 1111 1222333344444 67788775 4555555421 111111111 2234444331 11457899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH-HHHH
Q 037142 249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTV-CLKA 295 (383)
Q Consensus 249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~-al~~ 295 (383)
+..++..++...+......+. ..++.|++....-++.+..+ ++.+
T Consensus 1151 si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1151 SIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred HHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh
Confidence 999999999875544444433 37888999888777766544 4444
No 133
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0045 Score=59.34 Aligned_cols=168 Identities=13% Similarity=0.122 Sum_probs=116.9
Q ss_pred cCCCChhhHHHHH-HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142 153 LGHPSQSVLTQAL-HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI 231 (383)
Q Consensus 153 L~~~~~~v~~~a~-~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l 231 (383)
+.+.++.-+..|+ +++..++.+++ .. ..++.+++...+. +.++++-.-.-+-+++...|+..-. .+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATR-DVELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 5555555555555 44566655554 11 2455566666666 8888888888888888877643322 24
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcC
Q 037142 232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDT 311 (383)
Q Consensus 232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 311 (383)
+.+.+=++++++.+|..|..+++.+-. ++.... +++++.+++.++++.||+.|..|+.++.+.+...
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~---~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l----- 161 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV---KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL----- 161 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh---HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----
Confidence 456666777888888888888877642 233333 5788888888888888888888888888765433
Q ss_pred CCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
..+.|....+..+..+.++.|...|...+....++
T Consensus 162 -----------~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 -----------YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----------hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777888888888888888888888777766655
No 134
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.62 E-value=0.00018 Score=41.66 Aligned_cols=38 Identities=53% Similarity=0.654 Sum_probs=35.0
Q ss_pred HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
+.+..+.+.|+++.|++++.+++.++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46777889999999999999999999999999999986
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.62 E-value=0.00092 Score=63.94 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=136.8
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHH-------------HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFR-------------DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~-------------~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
..|+.+|+ ++++-..+..++.-+..|++..+ +.+. ..++|.+++.+ ...+...+..-..+|++
T Consensus 818 ~klld~Ls--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLS--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcC--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 34444444 35666677777777776665333 2222 45788899988 46677888899999999
Q ss_pred hcCCCCCCC-hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC---hhhHH
Q 037142 87 LCGGKPRPI-FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS---QSVLT 162 (383)
Q Consensus 87 l~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~---~~v~~ 162 (383)
...+.|... ......++|.|++.+.-.|..++..+..++..+... .+.....-.++ ++|.++.+=++.+ -.++.
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~-~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE-SETLQTEHLST-LVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh-ccccchHHHhH-HHHHHHhcCCCCCcchhHHHH
Confidence 988766542 223478999999999999999999999999888765 34444444443 7788887777755 56889
Q ss_pred HHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN 213 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n 213 (383)
.|+.+|..+.+.-|...-...+..++..+.+.|.++ ..-+|++|.++=.+
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 999999999986555544456668899999999998 88999999876443
No 136
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.58 E-value=0.0053 Score=48.97 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHh
Q 037142 30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQL 109 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~l 109 (383)
++.+|..++-+++.++...+...+ ..++.+...| +++++.+|++|+.+|..|...+..+. ...++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHH
Confidence 578999999999999965544333 2368899999 78899999999999999987653221 12344777888
Q ss_pred hccCCHHHHHHHHHHHHHhccC
Q 037142 110 VHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 110 l~~~~~~~~~~~~~~l~~l~~~ 131 (383)
+.+++++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999965
No 137
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0033 Score=58.99 Aligned_cols=220 Identities=13% Similarity=0.092 Sum_probs=135.6
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
+..+..+|.+.++.++..|+..|..++.+....+.. ...+++++-+.++..++-..+.-|..+.. .....
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence 455566666666677777777776666543222211 24455555444444444444444444441 12234
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
..+.+--+++++.++|.+++..++.....|....+-+.+-.+.+..+...--. =.+++.+-+...+++++..+...++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 56677778888999999999999999888886511122222222111111000 01245566888899999998776654
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhc
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNAT 257 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~ 257 (383)
.. .+++.+++.+.+. ++.-....+..+.......|..+..+ +..|.+-+.. .+.++.+.|+|.++.-+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 43 6789999999988 88777777777777766665555444 4455555543 57788889999999988
Q ss_pred CCC
Q 037142 258 FGG 260 (383)
Q Consensus 258 ~~~ 260 (383)
...
T Consensus 463 e~~ 465 (948)
T KOG1058|consen 463 EGL 465 (948)
T ss_pred hhh
Confidence 763
No 138
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.012 Score=52.06 Aligned_cols=182 Identities=16% Similarity=0.172 Sum_probs=132.9
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC---------ccccceecCCChH
Q 037142 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY---------SQTLYIINCGALP 189 (383)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~l~~~~~i~ 189 (383)
..++.-+.-++.. ++.+..+++...++.++.+|.++|..+..+.+..+..++..+- ..+..+++.++++
T Consensus 102 hd~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 102 HDIIQEMHVLATM--PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred HHHHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 3455566667766 7788888999999999999999999999999999999984321 2245567778889
Q ss_pred HHHHhhccccchhHHH------HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHHHHHHHHHHHhcCCCC
Q 037142 190 YLLGLLIDNHKTSIKN------YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAISNATFGGT 261 (383)
Q Consensus 190 ~l~~ll~~~~~~~~~~------~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~ 261 (383)
.|+..+..- ++.++. ..+..+-|++.-.+.....+.+.|.+..|..-+.. +-...+..|...++-+..+++
T Consensus 180 LLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 180 LLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 998888765 555554 46677888888888888888888888887774432 344566777778877777644
Q ss_pred HHHHHHHHHcCChHHHHhhcC---CCC------HHHHHHHHHHHHHHHHhch
Q 037142 262 HEQIKYLEREGCIKPLCDLLL---CPD------PQIVTVCLKALENILKVGE 304 (383)
Q Consensus 262 ~~~~~~l~~~~~i~~L~~ll~---~~~------~~v~~~al~~l~~l~~~~~ 304 (383)
+....+..-+++..+++-+. ..+ .+...+...+|+.++....
T Consensus 259 -e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~ 309 (536)
T KOG2734|consen 259 -ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA 309 (536)
T ss_pred -hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh
Confidence 45666667788888887653 333 2556677778887776544
No 139
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.52 E-value=0.013 Score=46.74 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH
Q 037142 114 DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG 193 (383)
Q Consensus 114 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ 193 (383)
++.+|.+++.+++.++.. .+. +++. .++.+...|+++++.|+..|+.+|..|...+.-. .+..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r-~~~----~ve~-~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-YPN----LVEP-YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-CcH----HHHh-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 578999999999999976 332 2332 5799999999999999999999999998654311 22233478888
Q ss_pred hhccccchhHHHHHHHHHHHHhcC
Q 037142 194 LLIDNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 194 ll~~~~~~~~~~~a~~~l~nl~~~ 217 (383)
++.++ ++.++..|..++..+...
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 88888 999999999999998765
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.015 Score=54.99 Aligned_cols=285 Identities=13% Similarity=0.121 Sum_probs=161.5
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR 100 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 100 (383)
.+=.++.+....+...|++++.++....+.. .. ..+..|--++ +++...+|-.|+++|..++...|... .
T Consensus 249 fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~---pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v----~ 318 (865)
T KOG1078|consen 249 FLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LA---PAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAV----T 318 (865)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhccccCHhh--cc---hHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccc----c
Confidence 3334445567788888888888877543221 11 1344444445 67778888888888888887664321 2
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccc
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 180 (383)
..-.-|-.++.+.+..+...+..++..-. ....+..+... ++.++.=+.++..-+...+.++|+.. .+
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG---~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~---fp---- 386 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTG---TESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLK---FP---- 386 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhc---chhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhh---cc----
Confidence 23334556666666666555555554433 23444444332 34444445555555555555554433 22
Q ss_pred ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 181 ~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
....+.+..|..+|.....-+.+.....++..++..+++.++. ++..|...+.+. +...-+...+.-+...+
T Consensus 387 -~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~Eg 458 (865)
T KOG1078|consen 387 -RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEG 458 (865)
T ss_pred -HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccC
Confidence 1223556666677665546677788888888877766555543 344455555432 22233444444443322
Q ss_pred CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC
Q 037142 261 THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN 340 (383)
Q Consensus 261 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 340 (383)
. ........+..+.....-.+..++..|..++.++...++... ....-.|.+++.+++
T Consensus 459 P----~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D~D 516 (865)
T KOG1078|consen 459 P----KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLNDSD 516 (865)
T ss_pred C----CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcCch
Confidence 1 000112344455555555677888889999998883332221 122456778899999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 037142 341 YEIHEKSAKILETYWCG 357 (383)
Q Consensus 341 ~~v~~~a~~~l~~~~~~ 357 (383)
++++++|.-.+..+-+.
T Consensus 517 devRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 517 DEVRDRATFYLKNLEEK 533 (865)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999888776633
No 141
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.50 E-value=0.0041 Score=47.48 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=99.7
Q ss_pred HHHHHHhcCChHHHHHHhcCCCC-----hhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC--CHHHHHHHHH
Q 037142 51 FRDLVLGEAALIPLLTQLNNHEN-----LSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACW 123 (383)
Q Consensus 51 ~~~~~~~~g~i~~L~~~L~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~ 123 (383)
+...++..|++..|++++.+... .++...++.++..|..+.-.........++..+...++.+ |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788999999999954432 4777888999999998864445555577888888888743 6899999999
Q ss_pred HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
.|-++..+ ++.....+.+.=-++.|+..|+.++++++.+++..+..|-...+
T Consensus 83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99999998 66667777777778999999999999999999998887765544
No 142
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0073 Score=59.68 Aligned_cols=240 Identities=13% Similarity=0.055 Sum_probs=145.9
Q ss_pred CCCChHHHHHHHHHHHHHhcCChHHHHHHHhc--CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142 27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGE--AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP 104 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 104 (383)
++.+..+|..+.++|..++... ......... .+-..|.+-+ ++.+...+...+.+|..+....+..........++
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3457899999999999998752 222111110 1122333333 34456677777888888877655333344444444
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhc--cCC---CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 105 TLAQLVHSNDEHVMSNACWGLSLLC--DGG---KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 105 ~l~~ll~~~~~~~~~~~~~~l~~l~--~~~---~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
-++-.++..+...++.+..+|..++ ... .++.....++. +++.+...+-.+...+....+-++..+.....+..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444448888999999999999888 110 01111222221 34444444433444343333445555544333221
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
..-.=.++++.+..+|.+. ++.++..|++.+..++..-++..-......+++.+..+.++....+|..+-..+-.++..
T Consensus 821 d~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1111124455566667788 999999999999999987766665555556899999988888888999888888888776
Q ss_pred CCHHHHHHHHH
Q 037142 260 GTHEQIKYLER 270 (383)
Q Consensus 260 ~~~~~~~~l~~ 270 (383)
.+.+.++.+..
T Consensus 900 fg~~eLe~~~p 910 (1176)
T KOG1248|consen 900 FGAEELESFLP 910 (1176)
T ss_pred hCHHHHHhhCH
Confidence 66565555443
No 143
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.45 E-value=0.0014 Score=46.05 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142 203 IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLER 270 (383)
Q Consensus 203 ~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~ 270 (383)
++...+++++|++..++.....+.+.++++.++.... ..+|-+|+.|.+++.|++.. +++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-NPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-CHHHHHHHHh
Confidence 4678899999999999999999999999999999875 46899999999999999988 4566555443
No 144
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0075 Score=61.07 Aligned_cols=326 Identities=14% Similarity=0.124 Sum_probs=183.2
Q ss_pred CCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 16 HGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 16 ~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
-+.+-.|+++-++ ..+.-+.-|+..++.++....+--+..+ ...||.|.+.= .+|+..++.....+-..|..++...
T Consensus 955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKV 1032 (1702)
T ss_pred hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHH
Confidence 3456667777665 4566677788888888854322111111 23456666664 6788887765544444444443333
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH---HHHHHhhh
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ---ALHTVGNI 171 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~---a~~~L~~l 171 (383)
.......+++-|+.-+.+..+.+|+.+|.+|..|.++.+.+....... .++..+++.+++=.+.|+.+ ++.+|+.+
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp-elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP-ELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557888888888889999999999999999998833333222222 35666677776645556655 56666666
Q ss_pred hcCCCccccceecCCChHHHHHhhc-----cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch---
Q 037142 172 ARGDYSQTLYIINCGALPYLLGLLI-----DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF--- 243 (383)
Q Consensus 172 ~~~~~~~~~~l~~~~~i~~l~~ll~-----~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--- 243 (383)
+..--+.....-...+++.+++++- +. -+.+|..++.++..++...+...... -...+|.|++....-.+
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~-v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSK-VNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccc-hHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHH
Confidence 5221111221112234555555543 44 67899999999999997765533222 23356666665554322
Q ss_pred --------hHHHHHHHHHHHhcCCCCH--HHHHHHHH-------cCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchh
Q 037142 244 --------YIKKEAAWAISNATFGGTH--EQIKYLER-------EGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 244 --------~v~~~a~~~l~~l~~~~~~--~~~~~l~~-------~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~ 305 (383)
.+..+|...+..=+..+++ +.+..++. ...+|.+.++++.+ .-..+..+...+..++.....
T Consensus 1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~ 1269 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS 1269 (1702)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc
Confidence 2223333332222211111 11111111 13567777777654 335566666677777766554
Q ss_pred cccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
+-.+ +...+ +..+.....+.++.+++....++-.++....+
T Consensus 1270 emtP---------~sgKl-----l~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1270 EMTP---------YSGKL-----LRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred ccCc---------chhHH-----HHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 4322 22222 34455556667888877777666666655544
No 145
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.43 E-value=0.0067 Score=50.22 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 037142 205 NYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCD 279 (383)
Q Consensus 205 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ 279 (383)
.+|+..+..++.+ ++.+..+++.++.-.|...++.. -..+|-.+..+++.+...++++.+.++.+.+++|..++
T Consensus 68 cnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 4456666666664 58888999999988888888643 45789999999999999888999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 280 LLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 280 ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.++.++.-.+-.|...+..++..+.+..... ...+.+..+..- .-..+..+.+++++.+.+.......++.+...
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC---~t~eRf~av~~v--L~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVGLNYIC---QTAERFFAVAMV--LNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHT---SSHHHHHHHHHH--HHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhHHHHHh---cCHHHHHHHHHH--HHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 9999988888889999999998766544321 112222222211 12334567888999888888888887777765
Q ss_pred C-----CCCccccccccccc
Q 037142 360 V-----GPQPGLLYAGNEEN 374 (383)
Q Consensus 360 ~-----~~~~~~~~~~~~~~ 374 (383)
. +-+|..+|+++...
T Consensus 222 ar~aL~~~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 222 AREALRQCLPDQLRDGTFSN 241 (262)
T ss_dssp HHHHHHHHS-GGGTSSTTTT
T ss_pred HHHHHHHhCcHHHhcHHHHH
Confidence 2 55677777775543
No 146
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.40 E-value=0.01 Score=52.08 Aligned_cols=210 Identities=12% Similarity=0.081 Sum_probs=148.0
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc-----cceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT-----LYIINCGALPYLLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
..++..+.+..++..|..-+-+.+..+..++.++........ +.+.. ..-+.+..++....++++...+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 345556789999999999888999999999999986544331 11221 112222233333325566666666777
Q ss_pred HHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 037142 213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLLLCPDPQIV 289 (383)
Q Consensus 213 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~ 289 (383)
.++.. +.....++....+..+.+.+..++.++...|..++..+.... +.....++.. .++...-.++.+++.=++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 66654 577788888888889999999999999999999999976653 4444444442 467778889999999999
Q ss_pred HHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 290 TVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 290 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
.+++..|..++...... ....+++.+..-+..+..++.+++..|+-.|..+..-|......
T Consensus 227 rqslkLL~ellldr~n~----------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNF----------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHSGGGH----------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred hhhHHHHHHHHHchhHH----------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999999754432 34567787888888899999999999999999999888777654
No 147
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0031 Score=60.10 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=143.3
Q ss_pred HHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142 23 VKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC 102 (383)
Q Consensus 23 ~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 102 (383)
+..+.++-+-++-+++..|..+.+.. +-...+...+++...+..| .+.|+-+--+|+..+..+|...| ..+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~i 803 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------EDI 803 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hhh
Confidence 34445566778999999999999644 4455566678889999999 67888888899998888887533 457
Q ss_pred hHHHHHhhccCC----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 103 LPTLAQLVHSND----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 103 i~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
+|.+.....+.. ++-+..+-.++.++... -.+......+ -++..++...++++..-+..++..++++|.-....
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa-~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA-LGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHH-hccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 788877544221 34455555666666654 2333333323 36777888888888888999999999999654422
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhc---CChHHHHHHhh-cCchhHHHHHHHHHH
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA---GLIGPLVNLLQ-NAVFYIKKEAAWAIS 254 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~-~~~~~v~~~a~~~l~ 254 (383)
....+. .++..++.+...+....+|++|+..+..+-.+.....-.+... +....+..... +++..+|..|+.++-
T Consensus 882 vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 221111 2345556666666578899999999999877655444443321 12223333332 345567777766664
Q ss_pred Hh
Q 037142 255 NA 256 (383)
Q Consensus 255 ~l 256 (383)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 33
No 148
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.40 E-value=0.021 Score=55.06 Aligned_cols=250 Identities=12% Similarity=0.122 Sum_probs=150.6
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHh-cCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL-NNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L-~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
+++..|.++......++......+|...+.-+++..... +.-+.|..+.+. +.+.|+.+...+-.++-.++... .+.
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~ 607 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANY 607 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhh
Confidence 566778888887788888888889998888777765544 345556655554 34557777666666666666531 222
Q ss_pred hhhhhchhHHHHHhhccCC----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhh
Q 037142 96 FDQVRPCLPTLAQLVHSND----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGN 170 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~ 170 (383)
-......+|.+++.+..++ .....-++..|..+.++.+++..+.++.. .+|++.++.-+ +|......+-.||+.
T Consensus 608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRA 686 (1005)
T ss_pred cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHH
Confidence 2344678999999998665 77778888888888887566655666665 77888887654 788899999999999
Q ss_pred hhcCCCccccceecCCChH--HHHHhhccccchhHHHHHHHHHHHHh----cCCHHHHHHHHhcCChHH-HHHHhhcCch
Q 037142 171 IARGDYSQTLYIINCGALP--YLLGLLIDNHKTSIKNYACWIISNIT----AGNREQIQAVIDAGLIGP-LVNLLQNAVF 243 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~i~--~l~~ll~~~~~~~~~~~a~~~l~nl~----~~~~~~~~~~~~~~~l~~-L~~ll~~~~~ 243 (383)
+.....+....--..++.. .++..++.--++..-..++..+|.++ ..-+.....-++. ++.. +.++-+....
T Consensus 687 ~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~l 765 (1005)
T KOG2274|consen 687 LISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETL 765 (1005)
T ss_pred HHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhH
Confidence 8866543322222222222 33333321113333334444444443 2211111111111 2222 3333344677
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLER 270 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~ 270 (383)
++-..-..+++++...........+.+
T Consensus 766 sviQsLi~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 766 SVIQSLIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 788888888888887744344444433
No 149
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.40 E-value=0.015 Score=51.89 Aligned_cols=178 Identities=11% Similarity=0.063 Sum_probs=116.0
Q ss_pred CCChhHHHHHHH-HHHhhcCCCCCCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142 71 HENLSMKRIATW-TLSNLCGGKPRPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR 148 (383)
Q Consensus 71 ~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~ 148 (383)
++..+-+..|+. ...-++.++..........++..+++.+.+ .+...+.-++..|..++.. .......-.+. .+..
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-Q~~~l~DstE~-ai~K 375 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN-QPARLFDSTEI-AICK 375 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh-chHhhhchHHH-HHHH
Confidence 334455666666 444445544333444456677788888887 7888999999999999987 33322222222 4566
Q ss_pred HHHhcCCCChhhHHHHHH-HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037142 149 LVKLLGHPSQSVLTQALH-TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID 227 (383)
Q Consensus 149 l~~~L~~~~~~v~~~a~~-~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~ 227 (383)
+++.-.+.++++...|.. ++..++.+.+.. .+..+..++.+. ++..-..++..+..++..-+..--..+-
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 667667766666666554 455566655532 255566666666 7777777777777777532221111123
Q ss_pred cCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 228 AGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 228 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
..+.|.+++...+.+..||+.|+++|..+...
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 56899999999999999999999999888644
No 150
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.39 E-value=0.009 Score=57.38 Aligned_cols=221 Identities=15% Similarity=0.082 Sum_probs=141.8
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ 108 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ 108 (383)
..+-++..|++++...++- ..-.. ...+++..|+++. ...+.++....+.+|+..+..+|.......+.+.|....
T Consensus 503 ~~~~~ki~a~~~~~~~~~~--~vl~~-~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKV--KVLLS-LQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred CCCchhHHHHHHHHhccCc--eeccc-cchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 3445566666666555521 11111 1235667777777 556788888999999999998887777777888888777
Q ss_pred hhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC----hhhHHHHHHHHhhhhcCCCccccce
Q 037142 109 LVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS----QSVLTQALHTVGNIARGDYSQTLYI 182 (383)
Q Consensus 109 ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l 182 (383)
++. ++||.+...+-.++..++.. ..+...+.+. .+|.++..|..++ .....-++..|..+.++.+.-....
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~ 655 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL 655 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence 664 67788877777777777764 3344444443 7899999998865 6677778888887887655433333
Q ss_pred ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH--HHHHHhhc-CchhHHHHHHHHHHHh
Q 037142 183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG--PLVNLLQN-AVFYIKKEAAWAISNA 256 (383)
Q Consensus 183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~--~L~~ll~~-~~~~v~~~a~~~l~~l 256 (383)
+-.-.++++.++.-++.+..+...+--+|+.+.....+....--..++.. .+++.++. -+++.-..++..++.+
T Consensus 656 l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~l 732 (1005)
T KOG2274|consen 656 LICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPL 732 (1005)
T ss_pred HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHH
Confidence 33356777777665554788888888888888876655554444333333 55554442 1333333444444433
No 151
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.0032 Score=62.03 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=124.4
Q ss_pred ChHHHHHhhC----CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142 18 AVPIFVKLLA----SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR 93 (383)
Q Consensus 18 ~i~~L~~lL~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (383)
..|.+++..+ .++|++|..|.-+|+.+..-+.++.+.- .+.|+..+.+++++.++.+++-+++-++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4566666663 3789999999999999987665554443 689999998899999999999999999876543
Q ss_pred CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142 94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~ 173 (383)
.....-+.+...+.+.++.+|+.+..++.+|..+ ..+--.|.++.+..+|.+++.++..-|=..+..|+.
T Consensus 995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 3445667788888999999999999999999976 233345899999999999999999888888888875
Q ss_pred CCCccccceecCCChHHHHHhhccc
Q 037142 174 GDYSQTLYIINCGALPYLLGLLIDN 198 (383)
Q Consensus 174 ~~~~~~~~l~~~~~i~~l~~ll~~~ 198 (383)
.... +. +++|-++.-|++.
T Consensus 1065 k~n~----iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGNT----IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred cccc----hh--hhchHHHHhhccC
Confidence 4432 22 3566666666544
No 152
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.38 E-value=0.014 Score=47.46 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142 204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC 278 (383)
Q Consensus 204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~ 278 (383)
..+++..+..++++ ++.+..+++..+--.+..+|.. +..-.|-.+..+|+.+..+++.+.+..+...+++|..+
T Consensus 96 VcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 34555556656555 4778888888887778888764 35679999999999999999889999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccH-----HHHHHHhcCCCHHHHHHHHHHHHH
Q 037142 279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGL-----EKIENLQRHDNYEIHEKSAKILET 353 (383)
Q Consensus 279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~L~~l~~~~~~~v~~~a~~~l~~ 353 (383)
+.++.++...+..|...+..++..+.. ...+++-.+.-..+ ..+.++.+.++..+.+-+.....+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~G----------L~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlr 244 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVG----------LYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLR 244 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhcccc----------HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999998899999999988876543 34445444333222 233466777888877776666666
Q ss_pred hcCCCC-----CCCCccccccccc
Q 037142 354 YWCGRV-----VGPQPGLLYAGNE 372 (383)
Q Consensus 354 ~~~~~~-----~~~~~~~~~~~~~ 372 (383)
+-+... ..-+|+.+|+++.
T Consensus 245 Lsdnprar~aL~~clPd~Lrd~tf 268 (293)
T KOG3036|consen 245 LSDNPRARAALRSCLPDQLRDGTF 268 (293)
T ss_pred hcCCHHHHHHHHhhCcchhccchH
Confidence 555443 2456677777654
No 153
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.38 E-value=0.041 Score=50.77 Aligned_cols=258 Identities=15% Similarity=0.044 Sum_probs=158.7
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhh----------ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLV----------HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV 150 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll----------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~ 150 (383)
+.+|.-++++...........++..|.++. ...++.+...|+.||+|+... .+...+.+.+.|..+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-SPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHH
Confidence 344555555554444444556666666665 245789999999999999988 667777788889999999
Q ss_pred HhcCCC-----ChhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhcc----------------ccchhHHHHHH
Q 037142 151 KLLGHP-----SQSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLID----------------NHKTSIKNYAC 208 (383)
Q Consensus 151 ~~L~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~----------------~~~~~~~~~a~ 208 (383)
..|+.. +.++....++.|.-++.........+++. +++..+...+.. +.+.....+++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999875 78888889999988887766666556554 677776665531 01344567889
Q ss_pred HHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---------cCchhHHHHHHHHHHHhcCCCCHHHHHHH-----------
Q 037142 209 WIISNITAGNREQIQAVIDAGLIGPLVNLLQ---------NAVFYIKKEAAWAISNATFGGTHEQIKYL----------- 268 (383)
Q Consensus 209 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---------~~~~~v~~~a~~~l~~l~~~~~~~~~~~l----------- 268 (383)
+++-|+....+..... .....++.++.++. .+.......++-+|.|+-.. ....+
T Consensus 161 KllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~----~~~~l~~~~~~~~~~~ 235 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE----CLDSLLSPKFQQSSLF 235 (446)
T ss_pred HHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH----HHhhhhcccCCccccc
Confidence 9999998655433320 11223444444332 12456777788888877322 11111
Q ss_pred ---HHcCChHHHHhhcCC-----CCH---HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH------------
Q 037142 269 ---EREGCIKPLCDLLLC-----PDP---QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE------------ 325 (383)
Q Consensus 269 ---~~~~~i~~L~~ll~~-----~~~---~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~------------ 325 (383)
.....+..|+++|+. .+. +...=.+..|.++++.... .++.++.
T Consensus 236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~-------------~Rk~lr~~lLP~~~Dr~~~ 302 (446)
T PF10165_consen 236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE-------------VRKYLRARLLPPDKDRKKP 302 (446)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH-------------HHHHHHHHhCCChhhcccC
Confidence 111234555555531 111 2233345555566554321 2222222
Q ss_pred ----hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 326 ----AKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 326 ----~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
...--+|.++..++...++..+..++-.+...
T Consensus 303 ~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 303 PEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhh
Confidence 24566788899999888988888877655443
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.015 Score=55.27 Aligned_cols=203 Identities=14% Similarity=-0.008 Sum_probs=142.8
Q ss_pred CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHH-HhccCCCchHHHHHHHhCcHHHHHHhcCCCC-hhhHHHHHHHHh
Q 037142 92 PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS-LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS-QSVLTQALHTVG 169 (383)
Q Consensus 92 ~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~-~~v~~~a~~~L~ 169 (383)
..+......++...|+.+...+.++.+..+..+|. .+.-. ..... ..++.+...+..+. .--...++.++.
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~~~~~-----~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--GERSY-----EVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--CCchh-----hhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 34455566899999999999888888888888887 22221 11111 23445544444432 222355788999
Q ss_pred hhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCChHHHHHHhhcCchhHHHH
Q 037142 170 NIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID-AGLIGPLVNLLQNAVFYIKKE 248 (383)
Q Consensus 170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~ 248 (383)
||+..++...+.+.+.-.++.+-.++..+ ++..+..++..+.|+..++.-....+.+ ...++.....+..........
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99988877777788877788788888888 9999999999999999888677777776 455666666666666777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 249 AAWAISNATFGGTHEQIKYLE-REGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 249 a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
++.++..++... ...+.... -......+..++.+++++++...+..+.|+....
T Consensus 647 ~a~a~a~I~sv~-~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~ 701 (748)
T KOG4151|consen 647 GAGALAAITSVV-ENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL 701 (748)
T ss_pred ccccccchhhcc-hhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence 777776555542 23333222 2457888999999999999999999988865543
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.32 E-value=0.024 Score=52.81 Aligned_cols=246 Identities=14% Similarity=0.106 Sum_probs=133.6
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ 108 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ 108 (383)
+++..+..|+..+..+...-|+..+.. +..++.+. .+.+..+|.+|+..|-.+|.+.+ ..+..+..+|.+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 678899999999999999888887766 57899999 78899999999999999999854 346778999999
Q ss_pred hhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC---CCChhhHHHHHHHHhhhhcCCC-cccc--ce
Q 037142 109 LVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG---HPSQSVLTQALHTVGNIARGDY-SQTL--YI 182 (383)
Q Consensus 109 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~---~~~~~v~~~a~~~L~~l~~~~~-~~~~--~l 182 (383)
+|.++++.-...+-++|..+... ++. +.+..++..+. .+++.++..++..|..=...-. +... .-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~-d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQ-DPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH--HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred HHhcccHHHHHHHHHHHHHHHhc-CcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 99999988888888888888765 221 12334444443 4677899999888854432211 1110 01
Q ss_pred ecCCChHHHHHhhccccchhHHHHHHHHHHHHhc----CCHHHHHHHHhcCChHHHHHHh------hcCchhHHHHHHH-
Q 037142 183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITA----GNREQIQAVIDAGLIGPLVNLL------QNAVFYIKKEAAW- 251 (383)
Q Consensus 183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~v~~~a~~- 251 (383)
.+.-++..+.++|.+- ...--...+.+|..+-. ......+.+++ .+.+.. ...+++.-.....
T Consensus 175 ~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~Idrli~C 248 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESIDRLISC 248 (556)
T ss_dssp HHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHHHHHHHH
Confidence 1122344555566543 33333344455555543 23344444432 222222 1122222222222
Q ss_pred ---HHHHhcCCC-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 252 ---AISNATFGG-THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 252 ---~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++--+.... +.....++++ .++|.+-++ +.+.+...+..+..++.++.
T Consensus 249 ~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~ 300 (556)
T PF05918_consen 249 LRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCG 300 (556)
T ss_dssp HHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT--
T ss_pred HHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCC
Confidence 222223332 4455556555 466655555 44556667777777776654
No 156
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0025 Score=56.71 Aligned_cols=274 Identities=15% Similarity=0.130 Sum_probs=146.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhc-----CChHHHHHHHhcCChHHH------HHHhcCCCChhHHHHHHHHHHhhc
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAA-----ESPRFRDLVLGEAALIPL------LTQLNNHENLSMKRIATWTLSNLC 88 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~-----~~~~~~~~~~~~g~i~~L------~~~L~~~~~~~~~~~a~~~L~~l~ 88 (383)
..+...+.+.++.++.++..++..+.. +.|+..+.-...|.+-.+ -...-++.-...+..++.++.++.
T Consensus 298 RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~ 377 (728)
T KOG4535|consen 298 RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSIL 377 (728)
T ss_pred HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcC
Confidence 344445566789999999988877652 223222222222211111 111213334456667777888877
Q ss_pred CCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142 89 GGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT 167 (383)
Q Consensus 89 ~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~ 167 (383)
... ...+.......+-.+..+-.+++.-++..|..++.-+.-+ +.-......-......+...+.+..-..+..+.++
T Consensus 378 ~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaawt 456 (728)
T KOG4535|consen 378 PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWS 456 (728)
T ss_pred chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHH
Confidence 654 2212211222222333333344455666677776666655 33222222222356777777888788899999999
Q ss_pred HhhhhcC----CCc---cccceecCCChHHHHHhh--ccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH----H
Q 037142 168 VGNIARG----DYS---QTLYIINCGALPYLLGLL--IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP----L 234 (383)
Q Consensus 168 L~~l~~~----~~~---~~~~l~~~~~i~~l~~ll--~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~----L 234 (383)
++|++.. -+. ....+.. -.+..++... .+..+.+|+.++.++|+|+. +..+.+.+.+.-.. +
T Consensus 457 lgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnll----Qvlq~i~~~~~~e~~~~~~ 531 (728)
T KOG4535|consen 457 LGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLL----QFLQPIEKPTFAEIIEESI 531 (728)
T ss_pred hhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH----HHHHHhhhccHHHHHHHHH
Confidence 9999732 221 1111110 0112222211 12227889999999999996 33333333222111 1
Q ss_pred HHHhh----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHH
Q 037142 235 VNLLQ----NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENI 299 (383)
Q Consensus 235 ~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l 299 (383)
..++. .....||-+||++++|+..+..-.....=....+++.|..++. ..+.+++.+|..+|..-
T Consensus 532 ~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 532 QALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 12222 3478999999999999987732111111011235677777765 45778888887777543
No 157
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.058 Score=50.81 Aligned_cols=130 Identities=19% Similarity=0.134 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142 75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154 (383)
Q Consensus 75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~ 154 (383)
.+.+.+..++..+-.. ........+.+..+++...+++..+|..++..|..+... ...+...+-.++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~--d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQL--DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhcc--CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHh
Confidence 4444444555444433 223446788889999999999999999999999999875 233333333357788888899
Q ss_pred CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142 155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN 213 (383)
Q Consensus 155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n 213 (383)
+..+.|+..|+.+|+.+-..+.+ -+..+...+..+++.+++++||+.++..+.+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999999999998532211 1235678888889888799999998765543
No 158
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.28 E-value=0.00098 Score=46.81 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=51.9
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCChHHHHHHHhc
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLA--SPSDDIRMQSVWALGNIAAESPRFRDLVLGE 58 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 58 (383)
|++.++++.+..+.+.|++|.++.... +.+|-+++.|++++.+++..+++.++.+.+.
T Consensus 12 nl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 12 NLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 678899999999999999999999865 4889999999999999999999988877643
No 159
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.28 E-value=0.084 Score=46.11 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=121.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCC-chHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC--CCccc
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGK-NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG--DYSQT 179 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~ 179 (383)
+.-.+..+.+.....|+.++..+..+..... .+.+..-.. .++..+...++.+..+-+..|+++++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~-tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRE-TLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3444455566778999999999998886511 122222122 3678888888887766667788888777644 22333
Q ss_pred cceecCCChHHHHHhhcccc-chhHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHH--hhc----------Cch
Q 037142 180 LYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNL--LQN----------AVF 243 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~l--l~~----------~~~ 243 (383)
..+++ .+.+.|...+.+.. ....|..++.+|+-++. ..++.....++ .+..++.. ... +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 33443 46777888877652 34566667767766543 33333332211 22222221 111 134
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
.+...|+.+-+-+....+...+....+ ..++.|..+|++.+.+||..|..+|.-+.+....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 577777666565665544444444333 4689999999999999999999999988876653
No 160
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.24 E-value=0.029 Score=51.51 Aligned_cols=189 Identities=16% Similarity=0.095 Sum_probs=118.7
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhh-cc----CCHHHHHHHHHHHHHhccCCCch
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV-HS----NDEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll-~~----~~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
+..++.+.....++..+..++.+++.+.-.-+.. .....++..+...+ .. ..+...+...|....+.-. .++
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R-~~~ 267 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR-GHP 267 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc-CCc
Confidence 3344444434445666777777777776542111 13344445444444 21 2245556666777666654 333
Q ss_pred HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc--------ccceecC----CChHHHHHhhccccchhH
Q 037142 136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ--------TLYIINC----GALPYLLGLLIDNHKTSI 203 (383)
Q Consensus 136 ~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~l~~~----~~i~~l~~ll~~~~~~~~ 203 (383)
.... ++..++.++.+ +++...+.+.+..+....++. ++.+.+. .++|.+++..... +...
T Consensus 268 ~~~~-----~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~ 339 (415)
T PF12460_consen 268 LATE-----LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEI 339 (415)
T ss_pred hHHH-----HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chhh
Confidence 3222 46778888877 567888888888888663322 2222222 2456666666666 5558
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142 204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
+...+.+++++..+-|...-.---..++|.+++.+..++.+++..+..++..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888899999998876543322223558999999999899999999999999998774
No 161
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.041 Score=53.65 Aligned_cols=313 Identities=16% Similarity=0.154 Sum_probs=174.0
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC---hh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI---FD 97 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~ 97 (383)
.+...++++.--+|..|||.++.+++.+ +++...-..+++...+.|.++.+-.++..|+.+|..+.++.+..+ ..
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 3334445555678999999999999432 222222234456677788667788899999999999998875442 23
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHH-HHhccCCCchHHHHHHHhCcHHHHHHhcCC------CChhhHHHHHHHHhh
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGL-SLLCDGGKNDEIQAVIEAGVCPRLVKLLGH------PSQSVLTQALHTVGN 170 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~------~~~~v~~~a~~~L~~ 170 (383)
.+.++++-++++.+.-+.+....+...+ +..+.. -.+....++.+ +.....+++.. .++.=...|.++|+.
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseE-lsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEE-LSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHh-hchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 3466666677777655544444444333 233332 22222333333 55666667663 122233445555554
Q ss_pred hh---cCCCccccce--ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhH
Q 037142 171 IA---RGDYSQTLYI--INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI 245 (383)
Q Consensus 171 l~---~~~~~~~~~l--~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 245 (383)
+. ..-++....+ ++..+++.+-.++++. -.++-++++..+.+++...++..-.+ =++++.+.+.+......-
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dy 698 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDY 698 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHH
Confidence 43 1112111111 2223455555666666 67777888888877766543332222 235677777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142 246 KKEAAWAISNATFGGTHEQIKYLE-REGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL 322 (383)
Q Consensus 246 ~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (383)
-....-++.|....+.+.....-. -.-+...+..++.++ ...=.+.|++.+..++-.+.. + .+++...
T Consensus 699 f~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~--------~dq~ipl 769 (1010)
T KOG1991|consen 699 FTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-L--------LDQYIPL 769 (1010)
T ss_pred HHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-c--------HhhHhHH
Confidence 788889999998776543222110 011233334444442 223345577777777766554 2 3344555
Q ss_pred HHHhccHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 037142 323 VEEAKGLEKIENLQR-HDNYEIHEKSAKILET 353 (383)
Q Consensus 323 l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~~ 353 (383)
|.+. .+.++.. .++...+..+.+...+
T Consensus 770 f~~~----a~~~l~~~~e~s~~~~~~leVvin 797 (1010)
T KOG1991|consen 770 FLEL----ALSRLTREVETSELRVMLLEVVIN 797 (1010)
T ss_pred HHHH----HHHHHhccccchHHHHHHHHHHHH
Confidence 5332 2334444 4555666777765543
No 162
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.22 E-value=0.11 Score=45.44 Aligned_cols=171 Identities=17% Similarity=0.093 Sum_probs=115.8
Q ss_pred hchhHHHH-HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC-c
Q 037142 100 RPCLPTLA-QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY-S 177 (383)
Q Consensus 100 ~~~i~~l~-~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~-~ 177 (383)
.++++.++ ..+++.++.+|+.++.|++-.|-- +.+.... .++.+...+..+++.++..+++++.-+....+ .
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 35554444 788899999999999999998876 3322222 46777888877899999999999988873322 1
Q ss_pred cccce-------ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCChHHHHHHhhc----CchhH
Q 037142 178 QTLYI-------INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID-AGLIGPLVNLLQN----AVFYI 245 (383)
Q Consensus 178 ~~~~l-------~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~----~~~~v 245 (383)
..... -...+++.+...+.+. ++.++..++..++.+..... +.+ ..++..|+-+..+ ++..+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~L 172 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQRL 172 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHHH
Confidence 11111 1235678888888888 88999999999988764331 111 3345555555543 35788
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC
Q 037142 246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP 284 (383)
Q Consensus 246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 284 (383)
|+.-..++-..+.. ++.+. ..+...+++.+..+.+..
T Consensus 173 rQ~L~~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 173 RQCLSVFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence 88888888888876 34443 445556777777776643
No 163
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0048 Score=56.23 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=112.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCccccce
Q 037142 104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQTLYI 182 (383)
Q Consensus 104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 182 (383)
..+.+++.+.++-+|.....++.---.+ .. ..+++..+++. .++.++.|+.+|.-+|+.+|..+.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~G--Tg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVG--TG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhc--CC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 3566677778877777766655433222 11 12567788887 677899999999999999986554
Q ss_pred ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCH
Q 037142 183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTH 262 (383)
Q Consensus 183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 262 (383)
..+...+++|+.+.+..+|.....+|+-.|++..... .+..|-.++.+++.-||+.|+.+++-+...+++
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 4566677788777689999999999998888764322 345666778888999999999999998877654
Q ss_pred HHHHHHHHcCChHHHHhhcCCCCHH
Q 037142 263 EQIKYLEREGCIKPLCDLLLCPDPQ 287 (383)
Q Consensus 263 ~~~~~l~~~~~i~~L~~ll~~~~~~ 287 (383)
+.-... .++++.+.+++.+++.+
T Consensus 655 ~Lnp~v--~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 655 ELNPNV--KRIIKKFNRVIVDKHES 677 (926)
T ss_pred ccChhH--HHHHHHHHHHHhhhhHh
Confidence 433332 24677777777666543
No 164
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.0019 Score=61.09 Aligned_cols=226 Identities=14% Similarity=0.066 Sum_probs=149.9
Q ss_pred ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHH-HHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALG-NIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL 84 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L 84 (383)
....+...|+.|+.+.|..+...+.+..+..+..+|. .+...... -..+++++.+.+.++..-.-.-.++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3445566788899999999998888888888888887 33322111 1234556666663222222233677889
Q ss_pred HhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH-hCcHHHHHHhcCCCChhhHH
Q 037142 85 SNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE-AGVCPRLVKLLGHPSQSVLT 162 (383)
Q Consensus 85 ~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~l~~~L~~~~~~v~~ 162 (383)
.||+..+ ..+........++.+-.++..+++..+..++..+.||..+ +.-....+.+ ....+.....+...+.....
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 9998877 3334444466777778888899999999999999999987 3333333444 23445555566666666777
Q ss_pred HHHHHHhhhhcCCCcccc-ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 163 QALHTVGNIARGDYSQTL-YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~-~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
++++++..+.....+.+. ...-......+..++.+. ++.++...++.+.|+.....+....++....++.+..+-.
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777777756555444444 222235677888888888 9999999999999976666566666666666655555433
No 165
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.17 Score=48.17 Aligned_cols=282 Identities=14% Similarity=0.091 Sum_probs=164.4
Q ss_pred CCChHHHHHhhCC-----C---ChHHHHHHHHHHHHHhc--CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142 16 HGAVPIFVKLLAS-----P---SDDIRMQSVWALGNIAA--ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS 85 (383)
Q Consensus 16 ~g~i~~L~~lL~~-----~---~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~ 85 (383)
+|+++.+...|.. + ++.-.+-|++.+.++.+ ..+.....+++.-+++.++..+ +++---++..++..++
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 5889999998842 1 23344556777776654 2223334445555667777777 5666778999999999
Q ss_pred hhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCCCChhhHHH
Q 037142 86 NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPSQSVLTQ 163 (383)
Q Consensus 86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~~~~~v~~~ 163 (383)
.+..+ .++......+.+....++++++..++..|+.++..+..+ ......+..+ +.++.++.+-+.-+.++...
T Consensus 486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~--~q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN--EQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc--hhhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 99554 344455677888888899999999999999999988876 2222333332 23333333334434444444
Q ss_pred HHHHH-hhhhcCCCccccceecC---CChHHHHHhhcccc-----chhHHHHHHHHHHHHhc------CCHHHHHHHHhc
Q 037142 164 ALHTV-GNIARGDYSQTLYIINC---GALPYLLGLLIDNH-----KTSIKNYACWIISNITA------GNREQIQAVIDA 228 (383)
Q Consensus 164 a~~~L-~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~-----~~~~~~~a~~~l~nl~~------~~~~~~~~~~~~ 228 (383)
++..+ ..++..-......+... .+++....++..++ .++-+..|.+.|..+.. ..+..... +..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEV 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHH
Confidence 44333 22332211111111110 12223333333221 12345556666655432 22222222 234
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhchhc
Q 037142 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP-QIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~al~~l~~l~~~~~~~ 306 (383)
...|.+--++.+.-.+.-.+|+..+-+.+.. ...+.. +.=|+.+.+.+++.+..+ .....+..++.|++.++...
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~--skeI~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFM--SKEIEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH--HHHhhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence 4566666667777788888899888777654 122221 123567777777777764 56677889999999988654
No 166
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.20 E-value=0.019 Score=50.04 Aligned_cols=194 Identities=14% Similarity=0.100 Sum_probs=116.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh--hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-CchHHH
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD--QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-KNDEIQ 138 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~ 138 (383)
...+..+ .+.....|..++..+.++.......+.. ....+++.+.+.++.+..+-+..++.++.-++... ..+...
T Consensus 46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3444555 3456788899999888888765333222 23567888888888777655666767666665431 224445
Q ss_pred HHHHhCcHHHHHHhcCCCC--hhhHHHHHHHHhhhhcCCCccccceec-CCChHHHHH--hhcc---------ccchhHH
Q 037142 139 AVIEAGVCPRLVKLLGHPS--QSVLTQALHTVGNIARGDYSQTLYIIN-CGALPYLLG--LLID---------NHKTSIK 204 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~l~~--ll~~---------~~~~~~~ 204 (383)
.+++. +.|.|...+.++. ..++..++.+|+.++.-.......+.. ...+..+.. ..+. .+++.+.
T Consensus 125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 55554 7788888888744 456667776777665322211111110 011221111 1111 1135678
Q ss_pred HHHHHHHHHHhcCCHH-HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 205 NYACWIISNITAGNRE-QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 205 ~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
..|+.+-+-|...-+. ...... ...++.|..+|.+++..||..|..+|+-+..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8888777776654333 233322 3468999999999999999999999987753
No 167
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.17 E-value=0.00086 Score=48.40 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=61.4
Q ss_pred CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+=..++.+|.+++++||.+|..++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4688899999555488888899999999999888888777789999999999999999999999999987753
No 168
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.15 E-value=0.036 Score=45.24 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=98.4
Q ss_pred cCCChHHHHHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhH
Q 037142 3 ASKTLEDKKAVVDHGAVPIFVKLLAS-----PSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSM 76 (383)
Q Consensus 3 ~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~ 76 (383)
|| +++.+..|.+..+=-.|-.+|.. +.+-+|..++.+++.+.. ++.+....++..+++|..++.+ ...++..
T Consensus 107 AS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GSelS 184 (293)
T KOG3036|consen 107 AS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGSELS 184 (293)
T ss_pred hc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hcccHHH
Confidence 44 58999999999887777777753 567899999999999986 4556777888899999999999 6778888
Q ss_pred HHHHHHHHHhhcCCCCCCChhh--------hhchh-HHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 77 KRIATWTLSNLCGGKPRPIFDQ--------VRPCL-PTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 77 ~~~a~~~L~~l~~~~~~~~~~~--------~~~~i-~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
+..|..++..+..++....... +...+ ..+.++.+.+++.+.++++.+..+++.+
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999988874432221 12222 2334555678899999999999999976
No 169
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.082 Score=47.68 Aligned_cols=265 Identities=14% Similarity=0.082 Sum_probs=141.4
Q ss_pred CChHHHHHhh----CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142 17 GAVPIFVKLL----ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 17 g~i~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~ 92 (383)
|.+..++..+ .+++..++..|+++|++.++..|.-..... .-.+..++.-|.+..+.+++..++.+|..+.....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 4444444443 347789999999999999987443322222 22355666666466689999999999998887543
Q ss_pred CCChh-hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH-HHH--hCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 93 RPIFD-QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA-VIE--AGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 93 ~~~~~-~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~--~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
..+.. ..-++.-.+..+..+.+++.+..+...+..|+.. .....+. +.+ .+-...++-.+.++++.+. .||+..
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l-~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~ 410 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL-AGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSE 410 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH-cCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHH
Confidence 32211 1233444466677789999999998888877754 2222222 221 1122344455566777664 455555
Q ss_pred hhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHH-----HHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS-----NITAGNREQIQAVIDAGLIGPLVNLLQNAVF 243 (383)
Q Consensus 169 ~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~-----nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 243 (383)
...+.-+-. .+.+..++... - +....-...+- .+....++.......+ ...++++.-+
T Consensus 411 ~~~c~p~l~----------rke~~~~~q~~-l-d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~-----~~~~f~sswe 473 (533)
T KOG2032|consen 411 LRTCYPNLV----------RKELYHLFQES-L-DTDMARFQAFYNQWCIQLNHIHPDILMLLLTE-----DQHIFSSSWE 473 (533)
T ss_pred HHhcCchhH----------HHHHHHHHhhh-h-HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHh-----chhheecchH
Confidence 444422211 11222222211 0 00000111111 1222222322222211 1122333344
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
.+|..|...-.++..+..+..+...--.-+...|-.+...+-++++..+..|+..+..
T Consensus 474 ~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 474 QVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 6777777666666654333333332222345556666677888999999999887764
No 170
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=97.11 E-value=0.047 Score=46.29 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=147.3
Q ss_pred HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CC--Chhhh---hchhHHHHHhhccCCHHHHHHHHH
Q 037142 50 RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RP--IFDQV---RPCLPTLAQLVHSNDEHVMSNACW 123 (383)
Q Consensus 50 ~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~--~~~~~---~~~i~~l~~ll~~~~~~~~~~~~~ 123 (383)
.....+.+.|.+..+++.+ ..-+-+.+..++.+..++-..+- .+ ..... ..++..+++--.+ .+++...+..
T Consensus 70 qLtqef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ 147 (342)
T KOG1566|consen 70 QLTQEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGN 147 (342)
T ss_pred HHHHHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHH
Confidence 3445567889999999999 66678888889998888877652 22 11122 2344444444222 4777777777
Q ss_pred HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCC----hHHHHHhhcccc
Q 037142 124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA----LPYLLGLLIDNH 199 (383)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----i~~l~~ll~~~~ 199 (383)
.+....++ ....+.+..+.-+.....+++.++-++...|..++..+.......+..++..+. .+.--.++.+.
T Consensus 148 mlrEcirh--e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~- 224 (342)
T KOG1566|consen 148 MLRECIRH--EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE- 224 (342)
T ss_pred HHHHHHhh--HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-
Confidence 77777776 556666777778889999999999899999999998887555444443443322 34455667777
Q ss_pred chhHHHHHHHHHHHHhcCC---HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142 200 KTSIKNYACWIISNITAGN---REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
+.-++..+...++.+..+. ....+++-...-+..++.+|++++..++-+|..+..-+..+.
T Consensus 225 Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 9999999999999987543 233444445677999999999999999999999988888775
No 171
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.063 Score=44.40 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=126.8
Q ss_pred HhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 14 VDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
-+...++.++..|.+ +.|-+|..|..+|+.+. +. ..++.+-+.. +++-.++++.+..++..+-..+
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~----------~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP----------ESLEILTKYI-KDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch----------hhHHHHHHHh-cCCccccchHHHHHHHHHHHhh
Confidence 345678999999876 66888999999999887 22 3456666666 6777777777766666653221
Q ss_pred ---------------CCCChhhhhchhHHHHHhhccCC-HH-HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142 92 ---------------PRPIFDQVRPCLPTLAQLVHSND-EH-VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154 (383)
Q Consensus 92 ---------------~~~~~~~~~~~i~~l~~ll~~~~-~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~ 154 (383)
|... ...+-+.-+...+.+.+ +. -+..+...|.|+-.. + .+..+.+-+.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E---e---------aI~al~~~l~ 197 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE---E---------AINALIDGLA 197 (289)
T ss_pred ccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH---H---------HHHHHHHhcc
Confidence 1111 11122333433333332 22 344555555555432 1 3566777777
Q ss_pred CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142 155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP 233 (383)
Q Consensus 155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~ 233 (383)
.++.-.++.+..+++.+-. .-.++.+.+.|.. ..++-+|..|+.+|+.++.. + .++.
T Consensus 198 ~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~v 255 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEV 255 (289)
T ss_pred cchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHH
Confidence 7888888999999987742 2347777776643 33788999999999998742 2 4556
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhc
Q 037142 234 LVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 234 L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
|...+.++.+-|++.+..++.-+-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 677788888888888888776554
No 172
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.08 E-value=0.21 Score=45.01 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-------C------------------CCC--------hhHHHHHHH
Q 037142 36 QSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-------N------------------HEN--------LSMKRIATW 82 (383)
Q Consensus 36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-------~------------------~~~--------~~~~~~a~~ 82 (383)
.|+..|-.+....+.....+.+.+++..+++.+. + ..+ ..+.+..+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 4556666666555555666677777777776652 1 000 133444556
Q ss_pred HHHhhcC-CC--CCCChhhh--hchhHHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142 83 TLSNLCG-GK--PRPIFDQV--RPCLPTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154 (383)
Q Consensus 83 ~L~~l~~-~~--~~~~~~~~--~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~ 154 (383)
++..+.. .. .......+ ..+...|...+++. .+.+...++..+..+..+ .+.....+.+.|+++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n-ePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN-EPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc-CCchhHHHHHcCChHHHHHHHh
Confidence 6666666 22 22222222 34455555666654 388999999999999998 8888899999999999999988
Q ss_pred -C---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc
Q 037142 155 -H---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198 (383)
Q Consensus 155 -~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~ 198 (383)
. ++.++....-.+|+.+|-+.. ..+.+.+.+.++.+++++.++
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCH
Confidence 4 677888888899999987665 455577889999999888764
No 173
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.06 E-value=0.0025 Score=46.07 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=57.4
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 351 (383)
++..|+++|. +.|+.+...|+.-|..+++..+. -+.++...|+.+.+.+|+.|+|++|+..|+..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5788888884 45788888899999999987543 356689999999999999999999999999998
Q ss_pred HHhc
Q 037142 352 ETYW 355 (383)
Q Consensus 352 ~~~~ 355 (383)
..+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 174
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.023 Score=54.48 Aligned_cols=219 Identities=12% Similarity=0.101 Sum_probs=136.7
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL 149 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l 149 (383)
.++.+.++..++..+..+.+...........+++.+.+..+++.|+-+--+++..+..||.. .+ ..++|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~--------e~il~dL 807 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YP--------EDILPDL 807 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cc--------hhhHHHH
Confidence 35567788899999999998654556666789999999999999999999999988888876 22 2356666
Q ss_pred HHh-cCC---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHH
Q 037142 150 VKL-LGH---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAV 225 (383)
Q Consensus 150 ~~~-L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~ 225 (383)
.+. ... ..++.+...-.++.+++..-.+....... -++..+++.+.++ +...|..++..+++++....-.....
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 663 322 11233333345555555433332222222 4566677777777 88889999999999986432211111
Q ss_pred HhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHH--HHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHH
Q 037142 226 IDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYL--EREGCIKPLCDLLLCP-DPQIVTVCLKALENIL 300 (383)
Q Consensus 226 ~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~ 300 (383)
+ +.++..++.+.. ++++.+|+.|+..+..+..+.+.+....+ .-.+....+....... +..++..+..++..+-
T Consensus 886 ~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 886 F-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred H-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 1 223444455444 46889999999999999876543333322 1123444455544443 4445555655555443
No 175
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.03 E-value=0.034 Score=52.28 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=140.8
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
...+++|.|++++...|..+|...+.-+-..... .-+..++..++|.+...+.+.++.++...+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 5578999999999999999998888777776654 223455567899999999999999999999999998854332
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
. .++...++.+..+-.+. +..+|.+..-+++.++....... .+.-.......-+.++-..-|..+.++++...
T Consensus 403 ~---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 R---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred h---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 2 34445566666665544 88899999999998876532222 12222334444567777788888888887776
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 306 (383)
..-+.. . +...+++.++-+..+++..++..|..++..+.....+.
T Consensus 476 ~~~~~~---~-va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQS---E-VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchh---h-hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 543211 1 23458888999998999999999998888888765554
No 176
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=97.03 E-value=0.094 Score=47.01 Aligned_cols=276 Identities=19% Similarity=0.152 Sum_probs=145.2
Q ss_pred hHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH-HHHHHhhcCCCCCCCh
Q 037142 19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA-TWTLSNLCGGKPRPIF 96 (383)
Q Consensus 19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a-~~~L~~l~~~~~~~~~ 96 (383)
+..++.=+.+ ....+|..++--|..-+. ++.++..+...|.+..+++.+...++..+...+ +.++.-++.+.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 556777777776766665 579999999999999999999544444344433 4445555555444333
Q ss_pred hhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc---C------CCChhhHHHHHH
Q 037142 97 DQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL---G------HPSQSVLTQALH 166 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L---~------~~~~~v~~~a~~ 166 (383)
.........+.+++... ......... .. .........+ .....+...+ . +...+-+..++.
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 33456667767777611 100000000 00 0001111110 0111111111 1 123344555666
Q ss_pred HHhhhh--------------cCCCccccceecCCChHHHHHhhcc----cc-----------chhHHHHHHHHHHHHhcC
Q 037142 167 TVGNIA--------------RGDYSQTLYIINCGALPYLLGLLID----NH-----------KTSIKNYACWIISNITAG 217 (383)
Q Consensus 167 ~L~~l~--------------~~~~~~~~~l~~~~~i~~l~~ll~~----~~-----------~~~~~~~a~~~l~nl~~~ 217 (383)
++-.++ ...+...+.+.+.|+++.++..+.. .. +-.....++++|-|.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 665553 1112234556667889999888752 10 112345578888888876
Q ss_pred CHHHHHHHHh--cCChHHHHHHh-h---cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH------HHhh-cC--
Q 037142 218 NREQIQAVID--AGLIGPLVNLL-Q---NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP------LCDL-LL-- 282 (383)
Q Consensus 218 ~~~~~~~~~~--~~~l~~L~~ll-~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~------L~~l-l~-- 282 (383)
+.+...++.. .+.++.+...+ . ....++...++.++.|++.++ ++.+..+...++... -+.. +.
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~ 331 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLP 331 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhccccccc
Confidence 6666666653 33333333332 2 233445677899999999874 344444443322211 1111 11
Q ss_pred -----CCCHHHHHHHHHHHHHHHHhchh
Q 037142 283 -----CPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 283 -----~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
....+...-++.++.|+++.++.
T Consensus 332 ~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 332 NYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred ccccccccchHHHHHHHhHHHheeeCcc
Confidence 11236677788888898876543
No 177
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.12 Score=46.59 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=100.7
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CCh
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQ 158 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~ 158 (383)
-...++.+.............+.+..+..-..+++..++..++.+|.+.+.+ .++........ .+..++.-|.+ .+.
T Consensus 237 d~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~-~ldaii~gL~D~~~~ 314 (533)
T KOG2032|consen 237 DIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTT-QLDAIIRGLYDDLNE 314 (533)
T ss_pred HHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHH-HHHHHHHHHhcCCcc
Confidence 3344444444332222233345555555555677889999999999999998 66666665554 45566655554 668
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCC---ChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHHHHHh--cCChH
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCG---ALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQAVID--AGLIG 232 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~--~~~l~ 232 (383)
+|.-.++.+|..+....... -+..+ +...+..++.+. ++++|..+...++.++.... ...+.+.+ .+...
T Consensus 315 ~V~leam~~Lt~v~~~~~~~---~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~ 390 (533)
T KOG2032|consen 315 EVQLEAMKCLTMVLEKASND---DLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA 390 (533)
T ss_pred HHHHHHHHHHHHHHHhhhhc---chhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc
Confidence 89888888888776432211 12222 334556677777 99999999999988875221 11111111 22233
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 233 PLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 233 ~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
.+...++++++.+-. ||.+....+
T Consensus 391 ~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 391 PLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred cceeeeCCCChHHHH-HHHHHHHhc
Confidence 444445566665544 444444444
No 178
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.0087 Score=59.15 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=110.5
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC 278 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~ 278 (383)
+|.++.+|.-+++.++.-+.+..+. -+|.|+.+|. ++++.+|-.++.+++-++-.- +..+. ..-+.|.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f-pnlie-----~~T~~Ly 1004 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF-PNLIE-----PWTEHLY 1004 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc-ccccc-----hhhHHHH
Confidence 7899999999999998777665543 4788999997 789999999999999998652 22222 2577899
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
..+.+.++.+++.|+..+..++- ..+++--|.+..+-.++.+++++|+..|......+-..+
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLIL------------------ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLIL------------------NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHH------------------hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999985 345777888888999999999999999986666666555
Q ss_pred C--CCCCccccc
Q 037142 359 V--VGPQPGLLY 368 (383)
Q Consensus 359 ~--~~~~~~~~~ 368 (383)
+ +.-+|+.+.
T Consensus 1067 n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1067 NTIYNLLPDILS 1078 (1251)
T ss_pred cchhhhchHHHH
Confidence 4 244444433
No 179
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.95 E-value=0.61 Score=48.18 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=77.5
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
+.+..++..+..+...+|..|++||..+...++.... ...+-..+..-+ .+....+|+.|+..++......+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~---- 887 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIP---- 887 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccH----
Confidence 4667777888888899999999999999987665332 123333445555 45567889999998887765443
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
.........+..-+.++...+|+.++..++.+|..
T Consensus 888 e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 888 ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 23344556666777788888999999999988876
No 180
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.29 Score=48.53 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=102.4
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~ 175 (383)
...+.++..|+..+++.|..++..++..+..++.. .+ ..+.+ .++...++++.. ++++..+-++-+|+.++...
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r-lp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR-LP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc-Cc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 34467888888889999999999999999999987 33 22222 245666665554 45778889999999998432
Q ss_pred CccccceecCCChHHHHHhhccc-------cchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDN-------HKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKK 247 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~-------~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 247 (383)
=-....+ ..+++.+++-+..+ ....+|..|++++..++... +.....+++.=.-..|...+.+++..+|+
T Consensus 412 lLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 1111100 14566666665432 14578999999999998743 34344433322223344556678889999
Q ss_pred HHHHHHHHhcCC
Q 037142 248 EAAWAISNATFG 259 (383)
Q Consensus 248 ~a~~~l~~l~~~ 259 (383)
.|..++......
T Consensus 490 AAsAAlqE~VGR 501 (1133)
T KOG1943|consen 490 AASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHHhcc
Confidence 998888766543
No 181
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.91 E-value=0.3 Score=44.11 Aligned_cols=234 Identities=14% Similarity=0.131 Sum_probs=143.4
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCCh---HHHHHHHhcCChHHHHHHhcC------CCChhHHHHHHHHHHhhcCCC
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESP---RFRDLVLGEAALIPLLTQLNN------HENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~~L~~------~~~~~~~~~a~~~L~~l~~~~ 91 (383)
.+..+++..+++-|..|+...+.+....+ ..++.+.+.=+.+.+-+++.. .++.-.+..++.+|..+|+..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 36677777888889999999999986543 456667777667888888842 234445677888999999987
Q ss_pred CCCChhhhhchhHHHHHhhccC---C----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh-HHH
Q 037142 92 PRPIFDQVRPCLPTLAQLVHSN---D----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV-LTQ 163 (383)
Q Consensus 92 ~~~~~~~~~~~i~~l~~ll~~~---~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~ 163 (383)
+-.....+-+-||.++.++... | ..+...+..+|..++.. +.....++..|.++.+.++-.-++.+- ..-
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~--e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA--EAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC--CchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 6556666678899999998732 2 34778888999999987 667788888999999987765443222 233
Q ss_pred HHHHHhhhhcCCC---ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH--HHHHHHHhcC----ChHHH
Q 037142 164 ALHTVGNIARGDY---SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR--EQIQAVIDAG----LIGPL 234 (383)
Q Consensus 164 a~~~L~~l~~~~~---~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~--~~~~~~~~~~----~l~~L 234 (383)
++..+.-.....+ +....+. .++..+..=+... +...+.+.|+.|..+..... -........+ ...-+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~ 249 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV 249 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence 3443333332221 1111111 1122222222334 66788889999986543322 1111111111 12234
Q ss_pred HHHhhcC-chhHHHHHHHHHHHhcCC
Q 037142 235 VNLLQNA-VFYIKKEAAWAISNATFG 259 (383)
Q Consensus 235 ~~ll~~~-~~~v~~~a~~~l~~l~~~ 259 (383)
..++.+. .+.-|..|.....|+++.
T Consensus 250 ~~IL~~kv~p~qr~pAL~Laa~~~hi 275 (698)
T KOG2611|consen 250 VAILQNKVAPSQRLPALILAANMMHI 275 (698)
T ss_pred HHHHhcccCchhcChHHHHHHHHHHH
Confidence 5556543 555666666666666544
No 182
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.19 Score=47.69 Aligned_cols=177 Identities=18% Similarity=0.103 Sum_probs=108.8
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
.=+.+-+++.+.|+-++.....++..-=.+.. +.+.+..|+..--++.+.+||+.|.-+|+-++..+++.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence 33455666777788777776655532211111 23567777777433449999999999999988877553
Q ss_pred HHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 225 VIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 225 ~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
.+..+.+|. +-++.||.-|+.+|+-.|........ +..|-.+..++..-||+.|+-++.-++...
T Consensus 590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA--------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA--------INLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH--------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 455566665 56999999999999998887432221 333333444566678888988888777654
Q ss_pred hhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH-HHhcCCCC
Q 037142 304 EAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL-ETYWCGRV 359 (383)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l-~~~~~~~~ 359 (383)
...-.. . -.|+.+.+.+++..++++.--+--.+| +.+.+.+.
T Consensus 656 t~~~~p--------k------v~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGG 698 (929)
T KOG2062|consen 656 TEQLCP--------K------VNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGG 698 (929)
T ss_pred ccccCc--------h------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCC
Confidence 332211 1 122345667777777776533333333 44444443
No 183
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.86 E-value=0.061 Score=50.19 Aligned_cols=123 Identities=19% Similarity=0.268 Sum_probs=86.5
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH
Q 037142 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK 151 (383)
Q Consensus 72 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~ 151 (383)
.+...++-|...+.....+-| .....++..++.+.+++|..+|.+|+..|..+|.. .++.+.. +...|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP----~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP----DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSK-----VADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G----GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhH-----HHHHHHH
Confidence 368889999999999988765 34567899999999999999999999999999987 5555554 4678999
Q ss_pred hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc---cccchhHHHHHHHHHHH
Q 037142 152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI---DNHKTSIKNYACWIISN 213 (383)
Q Consensus 152 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~---~~~~~~~~~~a~~~l~n 213 (383)
+|.++++.-...+=.+|..+...++. +.+..+..-+. .. ++.+|+.++..|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~-de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSG-DEQVRERALKFLRE 159 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS--HHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccC-chHHHHHHHHHHHH
Confidence 99999887777777777777655553 34555555554 45 78899999988754
No 184
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.00079 Score=59.80 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=113.0
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC----CCchH--HHHHHHhC
Q 037142 72 ENLSMKRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG----GKNDE--IQAVIEAG 144 (383)
Q Consensus 72 ~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~----~~~~~--~~~~~~~~ 144 (383)
.+.-++..|++++.-+.-+.. ..+.....+....++..+.++....+..++|++++++.. .++.. ...+.. .
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-L 481 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-H
Confidence 344456677778777777763 335556678888888888888899999999999998742 11111 111111 1
Q ss_pred cHHHHHHhcC---CCChhhHHHHHHHHhhhhcCCCccc---cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 145 VCPRLVKLLG---HPSQSVLTQALHTVGNIARGDYSQT---LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 145 ~i~~l~~~L~---~~~~~v~~~a~~~L~~l~~~~~~~~---~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
.+..+...-. -++++|+..+.++|+|+..--+... ......+.+..+......+....|+-++|.+++|+..+.
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 2333333221 2678999999999999974322110 001111222222222222336789999999999998754
Q ss_pred HHHHHHHHh----cCChHHHHHHhh-cCchhHHHHHHHHHHHhcCC
Q 037142 219 REQIQAVID----AGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 219 ~~~~~~~~~----~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~ 259 (383)
.- .+.+ ..+++.|..++. +.+.+||..|+.+|..-...
T Consensus 562 a~---~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 562 AL---PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cc---cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 11 1122 234566666664 57999999999999877654
No 185
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.81 E-value=0.036 Score=48.39 Aligned_cols=170 Identities=16% Similarity=0.051 Sum_probs=107.3
Q ss_pred CChHHHH-HhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-
Q 037142 17 GAVPIFV-KLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP- 94 (383)
Q Consensus 17 g~i~~L~-~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~- 94 (383)
+++..|+ ..+.+.++.+|+.++.+||-++--+.+..... ++.+.+.+ +..+..++..|+.++.-+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444443 66778999999999999999997655443333 56778888 4558999999999998887644211
Q ss_pred -Ch-------hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHH
Q 037142 95 -IF-------DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLT 162 (383)
Q Consensus 95 -~~-------~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~ 162 (383)
+. .....++..+.+.+.+.+++++..++..++.|... ..-.. ...++..|+-..-+ ++..++.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~-~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS-GRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-CCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 11 12356888889999999999999999999998765 21111 01233444333332 3455555
Q ss_pred HHHHHHhhhhcCCCccccceecCCChHHHHHhhccc
Q 037142 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~ 198 (383)
.....+-.++...+.... .+...+++.+..+....
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 555555666655543332 33344555555554433
No 186
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.78 E-value=0.0017 Score=34.78 Aligned_cols=29 Identities=38% Similarity=0.669 Sum_probs=25.7
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAA 46 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~ 46 (383)
++|.++++++++++++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999874
No 187
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.74 E-value=0.56 Score=46.28 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=115.7
Q ss_pred HHHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CCCC----hhHH
Q 037142 10 KKAVVDHGAVPIFVKLLAS-----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NHEN----LSMK 77 (383)
Q Consensus 10 ~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~~~----~~~~ 77 (383)
...+.+.|++..++.++.+ ...+.....+..|..++.- +.+|+.+++.|+++.|++.+. .... ..+.
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 4556678999999999986 2335566666766666654 689999999999999998884 2322 5666
Q ss_pred HHHHHHHHhhcCCCCCCChh-------------hhhchhHHHHHhhcc----CCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 78 RIATWTLSNLCGGKPRPIFD-------------QVRPCLPTLAQLVHS----NDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 78 ~~a~~~L~~l~~~~~~~~~~-------------~~~~~i~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
+..+.++..+.......... ....-+..+++.+.+ .++.+....+..|-+|+.+ ..+..+.+
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G-~~e~m~~L 267 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG-NEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC-CHHHHHHH
Confidence 66666666655433111000 022336666666663 4689999999999999998 77777766
Q ss_pred HHhCcHHHHHHhcCC--CChhhHHHHHHHHhhhhcCCC------ccccceecCCChHHHHHhhcc
Q 037142 141 IEAGVCPRLVKLLGH--PSQSVLTQALHTVGNIARGDY------SQTLYIINCGALPYLLGLLID 197 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~--~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~i~~l~~ll~~ 197 (383)
++. + ...+++=+- ....--...+.+++.++.+-+ ...+.+++.|++...+..|..
T Consensus 268 v~~-F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 268 VEH-F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred HHH-H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 654 2 332232111 111111234667777765433 234556778888877777653
No 188
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.74 E-value=0.039 Score=45.81 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCChhhh--hchhHHHHHh-------hccCC--H---HHHHHHHHHHHHhccCCCchHHH
Q 037142 73 NLSMKRIATWTLSNLCGGKPRPIFDQV--RPCLPTLAQL-------VHSND--E---HVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~l~~l-------l~~~~--~---~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
+++.++.|+.-|+.--+..+....... .|.+..+++= +..+. . .-..+++..+..++.+ ++-..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh--petr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH--PETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH---TTTHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC--hHHHH
Confidence 566677776666554433232222222 3444444331 12221 2 3334455556677777 56667
Q ss_pred HHHHhCcHHHHHHhcCCC-----ChhhHHHHHHHHhhhhcCCC-ccccceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142 139 AVIEAGVCPRLVKLLGHP-----SQSVLTQALHTVGNIARGDY-SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~-----~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
.+.++.+.-.+..+|... -+.++-.++++++.++..++ +.+..+.+.+++|..+..+..+ ++--+..|.+++.
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlq 164 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQ 164 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHH
Confidence 788888877788888652 36788899999999996544 5567778899999999999998 8888999999998
Q ss_pred HHhcCCHHHHHHHHh--------cCChHHHHHH-hhcCchhHHHHHHHHHHHhcCC
Q 037142 213 NITAGNREQIQAVID--------AGLIGPLVNL-LQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 213 nl~~~~~~~~~~~~~--------~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~ 259 (383)
.+...+ ....++-+ ..++..++.- ...+++.+-+..+.+-..++.+
T Consensus 165 KIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 165 KILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 886543 33333321 1234444433 3457889999999999999987
No 189
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.74 E-value=0.056 Score=45.18 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHH
Q 037142 246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVE 324 (383)
Q Consensus 246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (383)
...|..+|.-++--. +.....+.+...+..+++++. ...+.++..++.+|..++...+.+ .+.|+
T Consensus 108 i~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~FE 173 (257)
T PF08045_consen 108 IALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDFE 173 (257)
T ss_pred HHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHHH
Confidence 344556666665543 455666667899999999995 467899999999999888765543 55699
Q ss_pred HhccHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCCCCCCc
Q 037142 325 EAKGLEKIENLQRHD--NYEIHEKSAKILETYWCGRVVGPQP 364 (383)
Q Consensus 325 ~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~ 364 (383)
+.+|+..+..+..+. +.+++-++...|.-|..++.+....
T Consensus 174 ~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~ 215 (257)
T PF08045_consen 174 ELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPP 215 (257)
T ss_pred HhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCc
Confidence 999999999997764 5679999999999888888765443
No 190
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.73 E-value=0.31 Score=41.47 Aligned_cols=224 Identities=13% Similarity=0.019 Sum_probs=139.9
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
..|-..|.++++.+|..|+..|+.+...-+.. .+...-+..|+.++.+. .|......++..+..+.... ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 45667888999999999999999887543321 12233355666655321 25555666677777777443 222222
Q ss_pred hhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC
Q 037142 99 VRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 99 ~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~ 175 (383)
...++..+.+... +.....|..+...+..+..+ ..+....+- .+++..+++.+.. .||+-...+...+..+....
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~-~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN-HREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH-hHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 3344444444333 22367788888888888866 333333332 3477778888866 78999889999888887655
Q ss_pred CccccceecCCChHHHHHhhcc--------cc-c--hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142 176 YSQTLYIINCGALPYLLGLLID--------NH-K--TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY 244 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~--------~~-~--~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 244 (383)
+. ....+-+.+.+.. +. + .-.+..--..|.+....++... .-.+|.|++-|.++...
T Consensus 156 ~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 156 DI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPS 223 (262)
T ss_pred cc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcH
Confidence 41 2345555555431 11 1 1234444455555555554443 33688999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 037142 245 IKKEAAWAISNATFGGT 261 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~ 261 (383)
+|..+..+|..++..-+
T Consensus 224 ~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 224 VKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 99999999988876533
No 191
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.70 E-value=0.39 Score=47.31 Aligned_cols=239 Identities=17% Similarity=0.173 Sum_probs=147.6
Q ss_pred hchhHHHHHhhcc-----CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC----CCC----hhhHHHHHH
Q 037142 100 RPCLPTLAQLVHS-----NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG----HPS----QSVLTQALH 166 (383)
Q Consensus 100 ~~~i~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~----~~~----~~v~~~a~~ 166 (383)
.|++..++.++.+ .+.+....++..|...+.- ..+.+.+.+.+.++.|+..+. .+. ..+....+.
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv--~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV--KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4577777777763 3456777777778777765 678888888999999988874 333 677777777
Q ss_pred HHhhhhcCCCcc-c---cceecC--------CChHHHHHhhccc---cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142 167 TVGNIARGDYSQ-T---LYIINC--------GALPYLLGLLIDN---HKTSIKNYACWIISNITAGNREQIQAVIDAGLI 231 (383)
Q Consensus 167 ~L~~l~~~~~~~-~---~~l~~~--------~~i~~l~~ll~~~---~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l 231 (383)
++..+....... . ...... ..+..+++.+.+. .++.+....+++|.+++.++++..+.++++ +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 777766332211 1 001111 2255566666543 168889999999999999998888877653 1
Q ss_pred HHHHHHhhc-----CchhHHHHHHHHHHHhcCCC-----CHHHHHHHHHcCChHHHHhhcCCC--------CHHH-----
Q 037142 232 GPLVNLLQN-----AVFYIKKEAAWAISNATFGG-----THEQIKYLEREGCIKPLCDLLLCP--------DPQI----- 288 (383)
Q Consensus 232 ~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v----- 288 (383)
....++=.- ++..+. +.+++.++... +......+++.|++...++.+... +++-
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 222222111 122232 33444443321 356778888999999888766432 2222
Q ss_pred ---HHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 037142 289 ---VTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 289 ---~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
...++..|.-++......| .+...++++.+-.|-. +.+..|-..|..+|+.+.+.++
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ--------------~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQ--------------LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHH--------------HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 2345555665655443332 2345566666666633 3367799999999998888665
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.68 E-value=0.0089 Score=57.56 Aligned_cols=151 Identities=20% Similarity=0.166 Sum_probs=116.7
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
..++|.|++.+.+.+...+..-+.+|.++...-|...-.---...+|.|++.| +-+|..++..+..++.-+....+...
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccc
Confidence 46899999999987777888888889888876554221111134577888888 78899999999999988887766666
Q ss_pred hhhhhchhHHHHHhhccCC---HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 96 FDQVRPCLPTLAQLVHSND---EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
......++|.++.+=.+.+ ..+|..|+.++..+.+..+......... .++..+...|.++..-+|..|.++=
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~-~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP-LVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH-HHHHHhhhccCcHHHHHHHHHHHHh
Confidence 6677889999999888665 7899999999999999525544444444 4889999999999988998887653
No 193
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.67 E-value=0.12 Score=50.31 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=111.0
Q ss_pred HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCC-hHHHHHHhhc-Cchh
Q 037142 167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL-IGPLVNLLQN-AVFY 244 (383)
Q Consensus 167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~-l~~L~~ll~~-~~~~ 244 (383)
++++++..++.....+++.|++..+..++..-.+..++..+++.++|++...+........... ...+..++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889998888889999999999999999986558899999999999998643221111111101 1122223333 2336
Q ss_pred HHHHHHHHHHHhcCCCC-------HH-HHHHH--------------HHcCChHH-HHhhcC-CCCHHHHHHHHHHHHHHH
Q 037142 245 IKKEAAWAISNATFGGT-------HE-QIKYL--------------EREGCIKP-LCDLLL-CPDPQIVTVCLKALENIL 300 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~-------~~-~~~~l--------------~~~~~i~~-L~~ll~-~~~~~v~~~al~~l~~l~ 300 (383)
.-..|+..++.+..++. .+ ..+.+ .....+.+ +..++. +..+..+..|+|++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 66677777777766421 01 11111 11122333 545554 456788999999999999
Q ss_pred HhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 037142 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETY 354 (383)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~ 354 (383)
+..+ .+.+.+.+.|+++.+.++-.. ...++...+..++...
T Consensus 654 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 654 EQNK-------------EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HcCh-------------hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 7543 366778899998988877433 3445666666666543
No 194
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.62 E-value=0.081 Score=47.39 Aligned_cols=176 Identities=13% Similarity=0.160 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142 30 SDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ 108 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ 108 (383)
..+-+..|+.-|..+.. ++....+... ..++..+++.|.++.+...+..|+++|..++...+.+-.....-.+..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 45566777775555443 3333333222 233567888886557889999999999999999876655555667777777
Q ss_pred hhccCCHHHHHHHHHHH-HHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCC
Q 037142 109 LVHSNDEHVMSNACWGL-SLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA 187 (383)
Q Consensus 109 ll~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 187 (383)
.-.+.+.++...|.... ..++.. .+.. .+..+..++...|......++..+..++..-+..--..+=..+
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~-~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~di 449 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASH-LPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDI 449 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhh-Cchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhh
Confidence 77777766666665543 344443 2211 2233444444467677777888888887543311111122367
Q ss_pred hHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 188 LPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
.|.+++...+. +..+|+.|+++|-.+..
T Consensus 450 aP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 88888888888 99999999999987763
No 195
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.68 Score=44.05 Aligned_cols=103 Identities=20% Similarity=0.169 Sum_probs=78.6
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
|.+..+++.. .+++..++..++..|..+.......+.....++...+..-+.+..+.+|.+|..+|+.+-....++...
T Consensus 85 ~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~ 163 (892)
T KOG2025|consen 85 GTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP 163 (892)
T ss_pred HHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence 3344445554 567889999999999999986666677788899999999999999999999999999998541222222
Q ss_pred HHHHhCcHHHHHHhcCC-CChhhHHHHHHHH
Q 037142 139 AVIEAGVCPRLVKLLGH-PSQSVLTQALHTV 168 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L 168 (383)
+...+..+++. ++++|+..++..+
T Consensus 164 ------v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 164 ------VVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ------HHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 34566666654 8899999887665
No 196
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.56 E-value=0.012 Score=45.81 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=99.4
Q ss_pred HHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 147 PRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 147 ~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
..++..|. ...++++..++-++..+... ..+ -...-+-+.+...+... +.+-...++.++..+-...++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLDA---ARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444443 35677888888888777411 111 11112334444555555 6667888999999999999999888
Q ss_pred HH-hcCChHHHHHHhh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHH-HHHHHHHHHHH
Q 037142 225 VI-DAGLIGPLVNLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQ-IVTVCLKALEN 298 (383)
Q Consensus 225 ~~-~~~~l~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~al~~l~~ 298 (383)
++ ..|+++.+..++. ..+..+...++.+|..-|.. +.+...+..++++.|-+.++. ++.. ++..|+-+|+.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 88 7889999999998 67888999999998887765 444544556789999999964 4555 77777766654
No 197
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.56 E-value=0.019 Score=44.68 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=98.5
Q ss_pred ChHHHHHhhcc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142 187 ALPYLLGLLID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265 (383)
Q Consensus 187 ~i~~l~~ll~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 265 (383)
-++.++..+.. ...+++|..+..++..+. +...+. ....+-+.+-..+..++.+-...++.++..+--. .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 35556666654 337889999999998884 222222 2333445556666666677788888999888766 45655
Q ss_pred HHHH-HcCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh-cCCCH
Q 037142 266 KYLE-REGCIKPLCDLLL--CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ-RHDNY 341 (383)
Q Consensus 266 ~~l~-~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~~~~~ 341 (383)
..++ ..|+++.+..+.. +++..++..++.+|..-+.... .+. +....+++-|+++. .++++
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--------------~r~-~I~~~~~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--------------CRT-FISKNYVSWLKELYKNSKDD 143 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--------------HHH-CCHHHCHHHHHHHTTTCC-H
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--------------HHH-HHHHHHHHHHHHHHccccch
Confidence 5555 5799999999998 7788888888888865553222 233 33555679999998 46666
Q ss_pred H-HHHHHHHHHHH
Q 037142 342 E-IHEKSAKILET 353 (383)
Q Consensus 342 ~-v~~~a~~~l~~ 353 (383)
. ++-+|.-.|.+
T Consensus 144 ~~ir~~A~v~L~K 156 (157)
T PF11701_consen 144 SEIRVLAAVGLCK 156 (157)
T ss_dssp H-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6 78888777654
No 198
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.52 E-value=0.13 Score=48.48 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=113.6
Q ss_pred hHHHHHhhCC----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 19 VPIFVKLLAS----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 19 i~~L~~lL~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
-|...+..++ +|++++..|.-+|..+..-+.++... .+|.++..+.+++++.++.+|+-.++-+.....
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN-- 966 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN-- 966 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehh--
Confidence 3444445544 78999999999999887644444332 368999999779999999999988887765321
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
......-.+|.+-+.+.+..+++.++.++.++.-. .. +--.|-.+.+..+|.++|.++..-|-..+..++..
T Consensus 967 --~~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 967 --TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred --hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 12344567788888899999999999999998854 11 11236789999999999999998888888888865
Q ss_pred CCccccceecCCChHHHHHh
Q 037142 175 DYSQTLYIINCGALPYLLGL 194 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~l 194 (383)
+... -.|+++....+
T Consensus 1039 dNt~-----yn~fidifs~l 1053 (1128)
T COG5098 1039 DNTM-----YNGFIDIFSTL 1053 (1128)
T ss_pred ccch-----hhhhHHHHHHc
Confidence 5432 23666554433
No 199
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.49 E-value=0.081 Score=51.90 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=135.9
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
.+-+.|-.-+.+.++.-|..|+..+........ ........|.+-.++.....+.|..+...++.+|..++........
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 344556666777899999999999988876543 1111111244455555555677888899999999999987655566
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
....+.+|.++..+.+....++..+..++-..+.. .+ . ....+.+...+++.++.++..+...+.......+
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-~~--l-----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-TP--L-----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-cc--H-----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 66788999999999998888888888777776643 11 1 1357888999999999999998877776665444
Q ss_pred -ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 177 -SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 177 -~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
.....-.-.+.++.++....+. +..||..|..+++-+..
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 2222222235677788888888 99999999999988764
No 200
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.34 E-value=0.0075 Score=32.25 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=26.3
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
++|.+.++++++++++|..++++|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998854
No 201
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.32 E-value=0.042 Score=36.04 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037142 204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREG 272 (383)
Q Consensus 204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~ 272 (383)
.+.++|++++++... .....+.+.++++.++++.. ++...+|-.|.++|+-++.. .+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHHcC
Confidence 578999999998754 66666667899999999987 57899999999999999876 67777666555
No 202
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1.1 Score=43.14 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=54.8
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
....+.+-.++.++...+...++.++.++... .. +.+.. .+..+-.++.++..-++.+|.++|..++...+.
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~-~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNT-NS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhcccc-CH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 45677777888888889999999999888865 22 22222 467777888889999999999999999866654
No 203
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.26 E-value=0.091 Score=53.73 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=112.7
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc
Q 037142 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198 (383)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~ 198 (383)
.++.|....++.. .+..+.+ + +++..++..+..+...++..|++||..++..++. .+....+...+..-+.+.
T Consensus 795 ~~a~li~~~la~~--r~f~~sf-D-~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHA--RSFSQSF-D-PYLKLILSVLGENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDS 867 (1692)
T ss_pred hhHHHHHHHHHhh--hHHHHhh-H-HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccc
Confidence 3455555555543 2222222 2 4678888999999999999999999999987763 233344455555666666
Q ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142 199 HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC 278 (383)
Q Consensus 199 ~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~ 278 (383)
...||++|+..+|..+...++...... ..+..-+.+....||+.+...+..+|... +.... ....+.
T Consensus 868 -sasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~--pdf~~-----i~~~ca 934 (1692)
T KOG1020|consen 868 -SASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEET--PDFSK-----IVDMCA 934 (1692)
T ss_pred -hhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhC--CChhh-----HHHHHH
Confidence 889999999999999887777665543 35666667788899999999999998763 12222 233444
Q ss_pred hhcC---CCCHHHHHHHHHHHHHHHHhch
Q 037142 279 DLLL---CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 279 ~ll~---~~~~~v~~~al~~l~~l~~~~~ 304 (383)
+++. +++..++.-+...+.+++....
T Consensus 935 kmlrRv~DEEg~I~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 935 KMLRRVNDEEGNIKKLVRETFLKLWFTPV 963 (1692)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHhccCC
Confidence 4443 3333478888888888775443
No 204
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.19 E-value=1 Score=41.55 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=121.8
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC----hhhHHHHHHHHhhhhcCCCc
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS----QSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~----~~v~~~a~~~L~~l~~~~~~ 177 (383)
....+...+.++++..+..+...+..++.. ......++....+..|..++.+++ ..+...++.++..+..+.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 345567777788877777788888888876 778888888778899999998854 46777778888777655431
Q ss_pred cccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 178 QTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
.-..+...++.....+.... .+..+-..|+..+-+++.+++...+.+.+.--+..|+..++..+..++..|...+-.+
T Consensus 162 -sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 -SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred -eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 12223334454444444221 1567788899999999999988888888888899999999999999999988888888
Q ss_pred cCCCCHHHHHHHHH
Q 037142 257 TFGGTHEQIKYLER 270 (383)
Q Consensus 257 ~~~~~~~~~~~l~~ 270 (383)
.....+...+.+.+
T Consensus 241 ~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 241 FRKAPDDKRFEMAK 254 (713)
T ss_pred HhhCChHHHHHHHH
Confidence 77665555555544
No 205
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.17 E-value=0.076 Score=50.03 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=136.3
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142 141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE 220 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~ 220 (383)
++.+++|.++++.+..|..+|...+.-+-.+..+ ..+..++..+++.+...+.+. ++.+|+..+.++..++..-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL-- 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKL-- 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhh--
Confidence 4457899999999999999998777777666543 334567778999999999999 9999999999999988532
Q ss_pred HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142 221 QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 221 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~ 300 (383)
-...++...+..+..+-.+.+..+|.....+++.++....+..++. -....+.+.++++-...+..+.+++..-.
T Consensus 401 -~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~----vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 401 -SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKR----VLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred -chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcc----ccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 1123344455566665556778899998888888886643333222 23444555566665667887877776655
Q ss_pred HhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG 361 (383)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 361 (383)
+..+... + ....++.+.-+.-+++..++..|...+..|....+..
T Consensus 476 ~~~~~~~-----------v-----a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE-----------V-----ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh-----------h-----hhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5433221 1 2233577777788888999999999999888776543
No 206
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.13 E-value=0.9 Score=40.31 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=122.6
Q ss_pred hHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHh-cCC-hHHHHHHhhcC-----c--------hhHHHHHHH
Q 037142 188 LPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVID-AGL-IGPLVNLLQNA-----V--------FYIKKEAAW 251 (383)
Q Consensus 188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~-~~~-l~~L~~ll~~~-----~--------~~v~~~a~~ 251 (383)
++.+...|... ...+...+++.|..++. .+......+++ -++ .+.+..++... . +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 78888999888 78888899999999998 66677777763 233 34555555321 1 289999999
Q ss_pred HHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHH
Q 037142 252 AISNATFGGTHEQIKYLER-EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE 330 (383)
Q Consensus 252 ~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 330 (383)
.+..+...+++.....+++ .+.+..+++-+..+++++....+..+..-+-....-.+ ...-.+-+...+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r---------~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR---------STKCKLFNEWTLS 207 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh---------hhhhhhcCHHHHH
Confidence 9888888878887777776 67888999999998889999999999865544433221 1222344666788
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHHhcCCCCC
Q 037142 331 KIENLQRHDNY----EIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 331 ~L~~l~~~~~~----~v~~~a~~~l~~~~~~~~~ 360 (383)
.|..+-...++ .+.+.+...+..++.+...
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 88888887777 8999999999999887654
No 207
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.07 E-value=0.29 Score=47.87 Aligned_cols=196 Identities=20% Similarity=0.182 Sum_probs=122.8
Q ss_pred HHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH--HHHHhhccC-CHH
Q 037142 40 ALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP--TLAQLVHSN-DEH 116 (383)
Q Consensus 40 ~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~l~~ll~~~-~~~ 116 (383)
+|.+++.+.++..+.+++.|+...+..+++.....++...++..+.|++...+..........+. ....++..- +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 77788889999999999999999999999766788999999999999998764443332222222 333333333 346
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHH-HHHhh
Q 037142 117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPY-LLGLL 195 (383)
Q Consensus 117 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~-l~~ll 195 (383)
.-..++..+..+... .++.... +. -+.+......++...... . ........+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~-~~~~~~~----~~-----------r~~~~~~l~e~i~~~~~~---~-~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSD-SEKTTEC----VF-----------RNSVNELLVEAISRWLTS---E-IRVINDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhC-CCcCccc----cc-----------hHHHHHHHHHHhhccCcc---c-eeehhhhhcchhHHHHh
Confidence 777777777777655 2211000 01 111222222222222111 1 11222223333 55566
Q ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHH
Q 037142 196 IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISN 255 (383)
Q Consensus 196 ~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~ 255 (383)
..+..+..+.+|+|++.+++..+++....+.+.++++.+.+.-.. ....++.++...+-+
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 555478899999999999999988888888889998888876543 255566666555543
No 208
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.02 E-value=0.063 Score=44.86 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=74.7
Q ss_pred ChHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHH
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWT 83 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~ 83 (383)
+|..+..+.+...++.|+.+|+. ..+.++..++.+|..+.-+++.+...+-+.+++..++.++++.+ +.+++-.++.+
T Consensus 122 Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EF 201 (257)
T PF08045_consen 122 HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEF 201 (257)
T ss_pred CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHH
Confidence 57788999999999999999954 78999999999999999899999999999999999999996443 77888888888
Q ss_pred HHhhcCCC
Q 037142 84 LSNLCGGK 91 (383)
Q Consensus 84 L~~l~~~~ 91 (383)
|.-.....
T Consensus 202 L~fyl~~E 209 (257)
T PF08045_consen 202 LYFYLMPE 209 (257)
T ss_pred HHHHHccc
Confidence 87776654
No 209
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.037 Score=50.71 Aligned_cols=126 Identities=17% Similarity=0.296 Sum_probs=93.0
Q ss_pred CCChHHHHHh-hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 16 HGAVPIFVKL-LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 16 ~g~i~~L~~l-L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
.|++..+++. .++.+++++..|.-+|+-++.+++ ..++..+++|.++.+..++.-.+.+|+-.|....
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G-- 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTG-- 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--
Confidence 4567777777 677899999999999999987653 4567788888777899999999999998887752
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ 158 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 158 (383)
...++..|-.+..+.+.-+|..|+-++..+..+ .++....-+. ++...+.+.+.+...
T Consensus 619 ----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q-~n~~Lnp~v~-~I~k~f~~vI~~Khe 676 (926)
T COG5116 619 ----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQ-CNPELNPNVK-RIIKKFNRVIVDKHE 676 (926)
T ss_pred ----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh-cCcccChhHH-HHHHHHHHHHhhhhH
Confidence 233677788888888889999999999888766 3333222222 356666666665443
No 210
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.98 E-value=0.18 Score=49.56 Aligned_cols=192 Identities=16% Similarity=0.101 Sum_probs=128.6
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
..+-+.+..-+.+.++.-+..++..+...... .......- ..+.+..++.. +.+.|..+...++.+|..++......
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~~~~~~~-~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEE-AKKEIVKG-YTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhc-cccccccC-cchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 44555566666788899999999998888876 33011111 11233333333 35578888999999999998665433
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
...+. .+.++.++..+... ...++..+..++-.++...+ -....+.+...+.+.++.++.++...+.....
T Consensus 330 ~~~~~-~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 330 FRKYA-KNVFPSLLDRLKEK-KSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hHHHH-HhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 32222 25678888888877 78888877777665554221 13356778888999999999997777766665
Q ss_pred CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
..++.....-.-.++++.++....+.+.+||..|..++.-+...
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 53322222212245788899999999999999999998877764
No 211
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.92 E-value=0.81 Score=42.76 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=140.6
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ 108 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ 108 (383)
..++.|..++..|..+........ ...+ ..+.+.+.....++....-+.+|..|+.+.... ..+..++.|.+..
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~ 114 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDSSS-GLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLS 114 (464)
T ss_pred CCHHHHHHHHHHHHHHHHcccccc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHH
Confidence 456788888888888876442211 1111 123444444444433445556666666654222 2345666676665
Q ss_pred hhcc---------------------------CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhh
Q 037142 109 LVHS---------------------------NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSV 160 (383)
Q Consensus 109 ll~~---------------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v 160 (383)
.+.. .+.......+..+.++... +......-.-.+++..++.+. +..++..
T Consensus 115 wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKf-n~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 115 WLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKF-NFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 5531 1234455566666666665 322222111123555655553 3355556
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
...++..+-.+..... +-.+.++.++..|.+.. ...+...+..++.|++...-. +..+..|..+|.
T Consensus 194 i~~~L~vldaii~y~~------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~ 260 (464)
T PF11864_consen 194 IEACLSVLDAIITYGD------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHHHcCc------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccH-------HHHHHHHHHHHc
Confidence 6777777766654221 11233455555554320 336777888899999864411 224556777773
Q ss_pred c------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC--ChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142 240 N------AVFYIKKEAAWAISNATFGGTHEQIKYLEREG--CIKPLCDLLLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 240 ~------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~--~i~~L~~ll~~~~~~v~~~al~~l~~l~ 300 (383)
+ .+..+-+-|+..+..+....+......+--.- +++.+...++.+++.+-..++..+.+++
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 2 24566678888888887664333333322223 7888888888888777777777777777
No 212
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.69 E-value=1.1 Score=40.34 Aligned_cols=144 Identities=13% Similarity=0.201 Sum_probs=102.7
Q ss_pred HHHHHHHHhhhhc---CCCccccceec-CCChHHHHHhhcccc--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142 161 LTQALHTVGNIAR---GDYSQTLYIIN-CGALPYLLGLLIDNH--KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL 234 (383)
Q Consensus 161 ~~~a~~~L~~l~~---~~~~~~~~l~~-~~~i~~l~~ll~~~~--~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L 234 (383)
....++.+..+.. +.....+.+++ ..+...|..++.+.. .+.+-..|+.++..+....|.....+.+.|+.+.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 4445566666655 33344555666 556667777776542 46788889999999999988888888899999999
Q ss_pred HHHhh-c---CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH-------HHHHHHHHHHHHHHHhc
Q 037142 235 VNLLQ-N---AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP-------QIVTVCLKALENILKVG 303 (383)
Q Consensus 235 ~~ll~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-------~v~~~al~~l~~l~~~~ 303 (383)
++.+. . ++.++-...-.+++.+|-+ ....+.+.+.+.++.+++++.+++. +.-...-.++..++++.
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicLN--~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICLN--NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhcC--HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 99988 4 3566666667778888876 7889999999999999999976543 22233344566666655
Q ss_pred hhc
Q 037142 304 EAE 306 (383)
Q Consensus 304 ~~~ 306 (383)
+..
T Consensus 235 p~L 237 (379)
T PF06025_consen 235 PSL 237 (379)
T ss_pred HHH
Confidence 544
No 213
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.56 E-value=0.52 Score=43.41 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=116.0
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC---ChhHHHHHHHHHHhhcCCCCCCC
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE---NLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~---~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
...+.+.+.+++..-+..|..-|..++.+. .+...++...++..|.+++.+.. ..++...++.++..+..+.-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 456778888888888888999999998764 77777888888999999995332 35677777888888777653222
Q ss_pred hhhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142 96 FDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~ 173 (383)
......++.....+.+ ..+..+...|+..+-++..+ ++.....+.+.--++.++..++..+..+...|+..+..+..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~-s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG-SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC-ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 2333444444444443 33567788888889888887 66677778888889999999999999999998888887775
Q ss_pred CCC
Q 037142 174 GDY 176 (383)
Q Consensus 174 ~~~ 176 (383)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 544
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.50 E-value=0.43 Score=43.67 Aligned_cols=238 Identities=12% Similarity=0.041 Sum_probs=137.5
Q ss_pred HHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142 13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 13 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~ 92 (383)
.++...+..|+.++.++|+.-|.....+|.++-......|..+. ..+...+.+++.......-...++.+++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 44556678899999999999999999999998865556666554 33456677777545555667788888888887653
Q ss_pred CCC-hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142 93 RPI-FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170 (383)
Q Consensus 93 ~~~-~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~ 170 (383)
.+- .....-....++.+.+.+. .........++...+.. ++..... ++..++..--..++.=....+.-+..
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 232 2222333455556666554 34456666677666655 3332222 23444444444554444445555555
Q ss_pred hhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---cCChHHHHHHhhc-----Cc
Q 037142 171 IARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---AGLIGPLVNLLQN-----AV 242 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~-----~~ 242 (383)
+...-+...-.-+...+...+..++++. +..|.+.|+....|= ... .++. ..++|.+..-+.. =+
T Consensus 282 il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 282 ILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----YFL-SLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----HHH-HHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----HHH-HHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 5543321111111123456677778888 888888888765432 222 2222 2356677776643 16
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHH
Q 037142 243 FYIKKEAAWAISNATFGGTHEQI 265 (383)
Q Consensus 243 ~~v~~~a~~~l~~l~~~~~~~~~ 265 (383)
..+|..|..++.-+... ++...
T Consensus 355 ~~Vr~~a~~vl~~l~~~-d~~lf 376 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEM-DPKLF 376 (409)
T ss_dssp TTHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CHHHH
Confidence 78999998888888765 34433
No 215
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.44 E-value=0.65 Score=41.71 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=94.9
Q ss_pred HHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc----c-cc
Q 037142 126 SLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI----D-NH 199 (383)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~----~-~~ 199 (383)
-+++-. +.-..+.+..-.+.+-.-+.. +...-+.+|+..+..++...+.....+ +...+..++. + ..
T Consensus 195 Pnl~~~---e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~ 267 (370)
T PF08506_consen 195 PNLCLR---EEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSN 267 (370)
T ss_dssp HHHS-----HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT
T ss_pred CccCCC---HHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcc
Confidence 355543 333344444556666666654 345667889999999986543222111 1223333443 1 12
Q ss_pred chhHHHHHHHHHHHHhcCCHH------------HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHH
Q 037142 200 KTSIKNYACWIISNITAGNRE------------QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKY 267 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 267 (383)
+..-+..|+..++.++..... ....++...++|.|. --.+..+-+|..|++.+..+...-+++....
T Consensus 268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~ 346 (370)
T PF08506_consen 268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ 346 (370)
T ss_dssp -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH
Confidence 567778899999999864421 345556666777666 2224578899999999999987755544443
Q ss_pred HHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142 268 LEREGCIKPLCDLLLCPDPQIVTVCLKAL 296 (383)
Q Consensus 268 l~~~~~i~~L~~ll~~~~~~v~~~al~~l 296 (383)
+++.++..|.+++.-|...|..++
T Consensus 347 -----~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 -----IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -----HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -----HHHHHHHHhCCCCcchhhhhhhhC
Confidence 799999999999988888887664
No 216
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.42 E-value=2.2 Score=39.86 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhhcCCC-CCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142 74 LSMKRIATWTLSNLCGGK-PRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV 150 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~-~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~ 150 (383)
+.+-...+.++..+.... +.. ....+.+.+..+++...+++..+|..++..|..+... -..+....-.|++..+.
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLS 138 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence 334444455555544422 222 1456688888999999999999999999999998876 33444544556888888
Q ss_pred HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHH
Q 037142 151 KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWII 211 (383)
Q Consensus 151 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l 211 (383)
.-+-+-.+-|+..|+.+|+.+-....+. +......+..+++.+++..+|..|+--+
T Consensus 139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 139 ERLFDREKAVRREAVKVLCYYQEMELNE-----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 8888889999999999999886333221 1234556777777766888888876544
No 217
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.37 E-value=1.9 Score=46.71 Aligned_cols=272 Identities=9% Similarity=0.092 Sum_probs=148.8
Q ss_pred CCChHHHHHHHHHHHHHhcC---ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142 28 SPSDDIRMQSVWALGNIAAE---SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP 104 (383)
Q Consensus 28 ~~~~~i~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 104 (383)
+.+..+...|+..|..++.. .++....-....++.++..++.++.+.++++..+.++.++.......-......++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 45677888888888887742 222222223345677888888667788999999999999876543222223355666
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhccCCCchHH-----HHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC---
Q 037142 105 TLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI-----QAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD--- 175 (383)
Q Consensus 105 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~--- 175 (383)
.+.....+.++.+...+..++..+... .-..+ ..+. .++..+..+... .+.++--.|+..|++++..-
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d-~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIRE-YFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHh-hhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence 666566677788888888888877644 11101 1111 234445445443 34566677777777652110
Q ss_pred C------------------------ccccceec-----CCChHHH---HHhhccccchhHHHHHHHHHHHHhcC-----C
Q 037142 176 Y------------------------SQTLYIIN-----CGALPYL---LGLLIDNHKTSIKNYACWIISNITAG-----N 218 (383)
Q Consensus 176 ~------------------------~~~~~l~~-----~~~i~~l---~~ll~~~~~~~~~~~a~~~l~nl~~~-----~ 218 (383)
+ .....+.+ ...++.| ..+..+. +.+||..|+.+|-.+... +
T Consensus 1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 00000001 1123333 3334555 899999999988776532 2
Q ss_pred HHHHHHHHhcCChHHHHHHhhcC-----------------------chhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCC
Q 037142 219 REQIQAVIDAGLIGPLVNLLQNA-----------------------VFYIKKEAAWAISNATFGG--THEQIKYLEREGC 273 (383)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~ll~~~-----------------------~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~ 273 (383)
++.=..++. +++-++++.+++. +..+...+..+|.+++.-- --+.+..++ .++
T Consensus 1384 ~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~~~ 1461 (1780)
T PLN03076 1384 LPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-KKV 1461 (1780)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 222222333 3444455444321 0012233333444443210 011122222 245
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 274 IKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
+..|..++..++..+-..+..+|.+++.....
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 55666666677778888889999999876553
No 218
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.26 E-value=0.75 Score=39.31 Aligned_cols=202 Identities=10% Similarity=0.082 Sum_probs=139.1
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc----hHHHHHHHh-CcHHHHHHhcCCC-ChhhHHHHHHHHhhhhc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN----DEIQAVIEA-GVCPRLVKLLGHP-SQSVLTQALHTVGNIAR 173 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~-~~i~~l~~~L~~~-~~~v~~~a~~~L~~l~~ 173 (383)
.+....+++.+..-+.+.+.+++....++-+. .- .....+... .++..++.. .. .+++.-.+-..+.....
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~-qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcir 154 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRR-QVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIR 154 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHh-hcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHh
Confidence 56788899999988999999999999888865 22 222222221 233333333 12 35666666666666554
Q ss_pred CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCC---hHH-HHHHhhcCchhHHHHH
Q 037142 174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL---IGP-LVNLLQNAVFYIKKEA 249 (383)
Q Consensus 174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~---l~~-L~~ll~~~~~~v~~~a 249 (383)
+.. ..+.+....-+......+..+ .-++...|..+...+..........++..+. ++. --.++.++++-+|..+
T Consensus 155 he~-LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 155 HEF-LAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred hHH-HHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 433 444556666677777777777 7788888888888877665555556654332 333 5567788999999999
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142 250 AWAISNATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 250 ~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 306 (383)
..+++.+.... .....+++.+-.-+..++.+|+++...+|..|-....-++....+.
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~ 291 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP 291 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC
Confidence 99999987653 3344555554567889999999999999999999998887765544
No 219
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.26 E-value=1.5 Score=36.67 Aligned_cols=203 Identities=17% Similarity=0.107 Sum_probs=121.9
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
++.|+.-+.+..+++.+...+.+|..++.+. . .....++..+..+.+.++.+...-+...+..+-.. .+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHH---
Confidence 3455554657778999999999999999875 1 33455777777777777777766677777777765 32221
Q ss_pred HHhCcHHHHHHh-----c---C--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh-ccccchhHHHHHHH
Q 037142 141 IEAGVCPRLVKL-----L---G--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL-IDNHKTSIKNYACW 209 (383)
Q Consensus 141 ~~~~~i~~l~~~-----L---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~~~~~~a~~ 209 (383)
+.++.++.. . . +...+.......+++.+|...++.- ..+++.+..++ .+. ++..+..++.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~-~~~~~alale 144 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSC-DEVAQALALE 144 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 123333333 1 1 1344555666678888887777521 24678888888 666 8888889999
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcCCCCH
Q 037142 210 IISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDLLLCPDP 286 (383)
Q Consensus 210 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~ 286 (383)
.+..++... ...+ ......+..-+.. ..+.+.+..+..+..+.... +.+.... ....++..+-+...+.+.
T Consensus 145 ~l~~Lc~~~---vvd~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 145 ALAPLCEAE---VVDF--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHh---hccH--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhcccccc
Confidence 999988321 1111 1122233333322 35555555555555444433 2333333 344577777777776654
No 220
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.19 E-value=0.11 Score=48.92 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC 278 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~ 278 (383)
++.++..|.-+|..+..-+.+... .-+|.++..|. +++|.+|..|+..++.++..-+ ..+.. .-..|.
T Consensus 909 d~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN-~~~de-----~t~yLy 977 (1128)
T COG5098 909 DEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN-TTADE-----HTHYLY 977 (1128)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh-hhhHH-----HHHHHH
Confidence 788999999888888765544442 34788999997 7999999999999998875421 22222 356777
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
+-+.+.+..|+..|+..+..++-.+. +.--|-...+..++..++.+|.+.|--.+..+...+
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq------------------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQ------------------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccc------------------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 88888999999999999999886554 333444566777788888888887776666665555
Q ss_pred C
Q 037142 359 V 359 (383)
Q Consensus 359 ~ 359 (383)
+
T Consensus 1040 N 1040 (1128)
T COG5098 1040 N 1040 (1128)
T ss_pred c
Confidence 4
No 221
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.12 E-value=0.097 Score=34.37 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 34 RMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 34 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
...|+|+++++++. +.....+.+.++++.++++..+++...+|-.|.++|+-++...
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 56799999999974 3555566667999999999988888999999999999998764
No 222
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.06 E-value=1.2 Score=42.50 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=91.5
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHH
Q 037142 144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ 223 (383)
Q Consensus 144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~ 223 (383)
.++|.|...+++.+..++..++..+..+...-+ -.+++.-+++.+..+.....+..++..++-+++.++. ..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD 461 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLD 461 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHH
Confidence 488899999999999999999999999886544 2245566788887765444488999999999998872 222
Q ss_pred HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC
Q 037142 224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD 285 (383)
Q Consensus 224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 285 (383)
...-...+..+.......++.+......+..++..... .. ..+....++|.++-+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhccc
Confidence 21112234445555556788888888888777766532 11 33344567888777776554
No 223
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.98 E-value=2.4 Score=37.57 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=109.2
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHhhhhc-CCCccccceecC-C-ChHHHHHhhcccc----c--------hhHHHHHHHH
Q 037142 146 CPRLVKLLGHPSQSVLTQALHTVGNIAR-GDYSQTLYIINC-G-ALPYLLGLLIDNH----K--------TSIKNYACWI 210 (383)
Q Consensus 146 i~~l~~~L~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~-~i~~l~~ll~~~~----~--------~~~~~~a~~~ 210 (383)
++.+...|....+.+...+++.|..++. ........+.+. + -.+.+..++.... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888888888888999999999997 444444444332 2 1334444543210 1 2788887766
Q ss_pred HHH-HhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHH-hcCCC--CHHHHHHHHHcCChHHHHhhcCCCC
Q 037142 211 ISN-ITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISN-ATFGG--THEQIKYLEREGCIKPLCDLLLCPD 285 (383)
Q Consensus 211 l~n-l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~ 285 (383)
+.. +..+++..+..++ +.+.+..+..-|...++++......++.. +.... +......+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 544 5557777887877 56667888888888888888888888875 43332 3455556666778889999888777
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 037142 286 P----QIVTVCLKALENILKV 302 (383)
Q Consensus 286 ~----~v~~~al~~l~~l~~~ 302 (383)
+ .+...+-..|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 7888888888888754
No 224
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.88 E-value=2.7 Score=37.89 Aligned_cols=212 Identities=16% Similarity=0.196 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-----CChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALP 189 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 189 (383)
..++..++..+...+.. ..+....+... ++..+.++|.. ..+.+...++..|..++.... ....+...+.++
T Consensus 110 ~kvK~~i~~~~~ly~~k-Y~e~f~~~l~~-fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~-~~~lf~~~~~L~ 186 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEK-YEEEFEPFLPT-FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPH-HKNLFENKPHLQ 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH-HHTTT-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh-HHHHhCCHHHHH
Confidence 34555666666665554 34444444332 55666666644 235666778888877664322 221122222222
Q ss_pred HH-----HHhhc----------------------cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---
Q 037142 190 YL-----LGLLI----------------------DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ--- 239 (383)
Q Consensus 190 ~l-----~~ll~----------------------~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~--- 239 (383)
.+ ++.+. ..+...-|.+|+..+..++...++....++ ...+..++.
T Consensus 187 ~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~ 262 (370)
T PF08506_consen 187 QIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYA 262 (370)
T ss_dssp HHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHh
Confidence 22 22221 111345677888888888854333332222 223333333
Q ss_pred ---cCchhHHHHHHHHHHHhcCCCCH------H-----HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 240 ---NAVFYIKKEAAWAISNATFGGTH------E-----QIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 240 ---~~~~~v~~~a~~~l~~l~~~~~~------~-----~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
+.+.+-|..|...++.++..+.. . +...+....++|-|. --.+..|-++..|++.+..+-..-++
T Consensus 263 ~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~ 341 (370)
T PF08506_consen 263 SNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK 341 (370)
T ss_dssp H-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H
T ss_pred hCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH
Confidence 24677888899999999876521 0 345556666777776 22345677788888888777654332
Q ss_pred cccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 037142 306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 351 (383)
.+ -.+.++.+.+.+.+++.-|+..|..++
T Consensus 342 ~~-----------------l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 EQ-----------------LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HH-----------------HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 21 223568889999999999988887543
No 225
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.82 E-value=2.2 Score=36.31 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=133.0
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142 64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 141 (383)
|=..| .+++..+|..++.+|+.+...-+.. ......-++.....-+ .|......++.++..+... ..-.... .
T Consensus 4 Lg~~L-tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~-~~~~~~~-~ 78 (262)
T PF14500_consen 4 LGEYL-TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKM-KNFSPES-A 78 (262)
T ss_pred hhhhh-CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhC-cCCChhh-H
Confidence 44556 5778999999999999888765422 1222233333334433 3555555557777766644 2211111 1
Q ss_pred HhCcHHHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142 142 EAGVCPRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 142 ~~~~i~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
..++..+.+... .--...|..+...+..+..+...... -...+++..++..+....||+-...+...+..+...-+
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 113444444332 23456788888888888866443222 22346788888888877788888888887777765432
Q ss_pred HHHHHHHhcCChHHHHHHhhc-------C---ch--hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 037142 220 EQIQAVIDAGLIGPLVNLLQN-------A---VF--YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQ 287 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~-------~---~~--~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 287 (383)
+ ....+.+.+.+.. + ++ -.+..-..+|.++... ++..... .+|.|++-|.++.+.
T Consensus 157 ------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~~-----~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 157 ------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAPF-----AFPLLLEKLDSTSPS 223 (262)
T ss_pred ------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHHH-----HHHHHHHHHcCCCcH
Confidence 1 3344445554431 1 21 2334444555555443 3455444 799999999999999
Q ss_pred HHHHHHHHHHHHHHhch
Q 037142 288 IVTVCLKALENILKVGE 304 (383)
Q Consensus 288 v~~~al~~l~~l~~~~~ 304 (383)
++..++..|...+...+
T Consensus 224 ~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 224 VKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 99999999988887543
No 226
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.82 E-value=0.28 Score=38.27 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=82.4
Q ss_pred CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
..++.|+++|+. .++.+|.+++++||.+..-+|...+.+... .+ ..-....+......... + ....+..+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~---~-~~~~~~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP---M-MGISPSSE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh---h-ccCCCchH
Confidence 356788888886 579999999999999987666544432211 11 00000111111111111 1 11112233
Q ss_pred hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 96 FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
......++..|.+.++++. ..-...++.++.++... ....+...... ++|.++..++..++..++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~-l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS-LGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-cCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444667778888888665 33334456666655543 22233333333 7899999999877788888877777664
No 227
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=1.7 Score=44.79 Aligned_cols=102 Identities=6% Similarity=0.050 Sum_probs=58.6
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcH
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVC 146 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i 146 (383)
..+..+++...+.++.++..............+++.+-...... ...+.+.+..++.-++.. .-+....-+-.+++
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssD-fLqSLp~sci~~li 930 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSD-FLQSLPTSCILDLI 930 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhc-chhcCChHHHHHHH
Confidence 34456677777778888776542222222345555555544433 456777777777777755 22222222222456
Q ss_pred HHHHHhcCC-CChhhHHHHHHHHhhhh
Q 037142 147 PRLVKLLGH-PSQSVLTQALHTVGNIA 172 (383)
Q Consensus 147 ~~l~~~L~~-~~~~v~~~a~~~L~~l~ 172 (383)
..+..+-+. .|-++--.|+..+++++
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHH
Confidence 666666544 66677777888787776
No 228
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.76 E-value=0.92 Score=41.53 Aligned_cols=233 Identities=13% Similarity=0.036 Sum_probs=132.3
Q ss_pred hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCch
Q 037142 57 GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 57 ~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
+...+..|+.++ +++|+.-|...-.+|.++....+.........+...+.+.+... ...-...++..++.+..+...+
T Consensus 131 ~~~fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 131 DQKFIKKLLELF-DSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp -HHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred CHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 344567788888 78899889998888888877655555555566777777777633 4555666777777777662222
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHH
Q 037142 136 EIQAVIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI 214 (383)
Q Consensus 136 ~~~~~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl 214 (383)
..+.... -+...++.+.+.+.- ........++..++..++.... .++..++..--.. ++.-...-+.-+..+
T Consensus 210 lk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~-----~~i~~llk~WP~t-~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 210 LKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAE-----PVIKGLLKHWPKT-NSQKEVLFLNELEEI 282 (409)
T ss_dssp --HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHH-----HHHHHHHHHS-SS--HHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH-----HHHHHHHHhCCCC-CchhHHHHHHHHHHH
Confidence 2222111 133455666666443 3345566677777766664332 2334444444333 343344455556666
Q ss_pred hcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhc----C-CCC
Q 037142 215 TAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLL----L-CPD 285 (383)
Q Consensus 215 ~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll----~-~~~ 285 (383)
...- +..... +...++..+..++.+.+.+|.+.|+....| +....++.. .++|.++..+ + +-+
T Consensus 283 l~~~~~~~f~~-i~~~lf~~la~ci~S~h~qVAErAl~~w~n-------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 283 LEVLPPEEFQK-IMVPLFKRLAKCISSPHFQVAERALYFWNN-------EYFLSLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HTT--HHHHHH-HHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHhcCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 5533 232222 234467788888999999999988766532 222222322 2455555443 3 236
Q ss_pred HHHHHHHHHHHHHHHHhchh
Q 037142 286 PQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 286 ~~v~~~al~~l~~l~~~~~~ 305 (383)
..++..+..++..+...+..
T Consensus 355 ~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp TTHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHhCHH
Confidence 68898899998888775543
No 229
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.68 E-value=0.78 Score=43.75 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=97.0
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~ 174 (383)
..+...++|.|..-+++.+..++..++..+..+++. -+ ...+ ..-++|.+..+. ++.+..++..++-|++.++..
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~v-k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFV-KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHH-HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 345578899999999999999999999999998876 22 2333 334778877763 457889999999999999832
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY 244 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 244 (383)
-+. ..-...+..+....... ++.+....+++..++....... ..++-++++|.++.+...+...
T Consensus 460 lD~----~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 460 LDK----AAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHH----HHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence 221 11112344555555666 8889998888888887644332 4455677899998888765433
No 230
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.68 E-value=0.05 Score=43.81 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=63.0
Q ss_pred ChHHHHHHHhCCChHHHHHhhCC---------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhH
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLAS---------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM 76 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~---------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~ 76 (383)
+......|++.|++..|++.|.. .+.+++..++.||..+..........+-..+.+..++..| .+++..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence 45678899999999999998853 3457889999999999876544444444568899999999 6889999
Q ss_pred HHHHHHHHHhhc
Q 037142 77 KRIATWTLSNLC 88 (383)
Q Consensus 77 ~~~a~~~L~~l~ 88 (383)
+..++.+|+.+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 231
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.64 E-value=0.37 Score=38.24 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC-------------------cHHHHHHhcCC-CChhhHH
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG-------------------VCPRLVKLLGH-PSQSVLT 162 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-------------------~i~~l~~~L~~-~~~~v~~ 162 (383)
.+.+.-++.++++.+|..++.++..+.++ .........+.. +-..|+..|.. .+..+..
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 34455566688999999999999999987 443333322111 12234444554 5788999
Q ss_pred HHHHHHhhhhcCCCccccceecCCChHH----HHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 163 QALHTVGNIARGDYSQTLYIINCGALPY----LLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~----l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
..++++..++...+... ++.|+++. +..++.+. |.+++..++.+++.+....
T Consensus 121 q~lK~la~Lv~~tPY~r---L~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHR---LPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHccCChhh---cCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 99999999998877432 23455544 45566777 9999999999999887643
No 232
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.62 E-value=2.3 Score=35.59 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=114.9
Q ss_pred hHHHHH-hhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 19 VPIFVK-LLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 19 i~~L~~-lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
++.|+. .-+..+++.+...+.+|..++..+..... -++..+..+. +.+.......+...+..+-...+. .+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r-~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLV-EQGSLELRYVALRLLTLLWKANDR-HF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCch-HH-
Confidence 344554 44458999999999999999976511111 1234455555 455555556677777777665421 11
Q ss_pred hhhchhHHHHHh--------hc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHH
Q 037142 98 QVRPCLPTLAQL--------VH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALH 166 (383)
Q Consensus 98 ~~~~~i~~l~~l--------l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~ 166 (383)
+.+..++.. .. +...+.......++..+|.. .++ ....+++.+..+| ++.++.++..++.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p~-----~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS-RPD-----HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-Chh-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 333333333 01 22355556666788889987 333 1223678888888 7888889999999
Q ss_pred HHhhhhcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHHHHHhcCChHHHHHHhhcCch
Q 037142 167 TVGNIARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQAVIDAGLIGPLVNLLQNAVF 243 (383)
Q Consensus 167 ~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~ 243 (383)
+|..++... +++. ..-..+.+-++.+..+.+....+..+..+..+.- ..........++..+.++..+.+.
T Consensus 145 ~l~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 145 ALAPLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 999998322 2221 2234455555555456666655555554443221 111122344556666666655443
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.59 E-value=0.34 Score=38.91 Aligned_cols=126 Identities=15% Similarity=0.086 Sum_probs=80.9
Q ss_pred hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc----------------CChHHHHHHhcC-----CCChhHHHHHHHHH
Q 037142 26 LASPSDDIRMQSVWALGNIAAESPRFRDLVLGE----------------AALIPLLTQLNN-----HENLSMKRIATWTL 84 (383)
Q Consensus 26 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~----------------g~i~~L~~~L~~-----~~~~~~~~~a~~~L 84 (383)
+.++.......++..|.|++..+...+ .+++. ..+..|+.++.+ .....-....+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 334555677888899999998654433 22222 245666776644 12344566788999
Q ss_pred HhhcCCCCCCChhhh--hch--hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH---hCcHHHHHHhcC
Q 037142 85 SNLCGGKPRPIFDQV--RPC--LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE---AGVCPRLVKLLG 154 (383)
Q Consensus 85 ~~l~~~~~~~~~~~~--~~~--i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~i~~l~~~L~ 154 (383)
.|++.....+..... .+. +..|+.+.++.+..-|.-++.+|.|+|-. .+....+.. -+++|.++.-|.
T Consensus 83 ~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 83 ANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhcc
Confidence 999998765554443 233 77788888888888888899999999976 344444433 245555544443
No 234
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.59 E-value=0.36 Score=37.60 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=29.4
Q ss_pred CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222 (383)
Q Consensus 186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~ 222 (383)
.+++.|+.+++++.+..+|.++++++|.+.+-+|...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~ 46 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKH 46 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH
Confidence 4577888888887679999999999999987665433
No 235
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.56 E-value=0.29 Score=39.30 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=77.4
Q ss_pred CCChhhHHHHHHHHhhhhcCCCcccc---------------ceecCCChHHHHHhhcc-----ccchhHHHHHHHHHHHH
Q 037142 155 HPSQSVLTQALHTVGNIARGDYSQTL---------------YIINCGALPYLLGLLID-----NHKTSIKNYACWIISNI 214 (383)
Q Consensus 155 ~~~~~v~~~a~~~L~~l~~~~~~~~~---------------~l~~~~~i~~l~~ll~~-----~~~~~~~~~a~~~l~nl 214 (383)
+++......++..|.|++........ ...+...+..|+..+.. .....-......++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 33444555566667777654432211 01122356777777765 11344566788899999
Q ss_pred hcCCHHHHHHHHh--cCC--hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH---cCChHHHHhhc
Q 037142 215 TAGNREQIQAVID--AGL--IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER---EGCIKPLCDLL 281 (383)
Q Consensus 215 ~~~~~~~~~~~~~--~~~--l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~---~~~i~~L~~ll 281 (383)
+... +.++.+++ .+. +..|.....+.+..-|.-++.+|-|+|-. .+....++. -++++.|+--+
T Consensus 86 S~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 SQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred cCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhc
Confidence 7764 88888884 344 77888888888777788889999999987 344455554 24445444433
No 236
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.20 E-value=0.35 Score=36.89 Aligned_cols=75 Identities=7% Similarity=-0.017 Sum_probs=64.1
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhch
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~ 304 (383)
.+..|..-+.+.++.+...|...|-.++.+++......+.+.+++..|..++.. .++.|+..++..+........
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 345566677788999999999999999999988888888889999999999987 688999999998888776544
No 237
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.07 E-value=2.6 Score=45.75 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=114.4
Q ss_pred CCChhHHHHHHHHHHhhcCCCCC----CChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCc
Q 037142 71 HENLSMKRIATWTLSNLCGGKPR----PIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGV 145 (383)
Q Consensus 71 ~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 145 (383)
+++..+...|+..|..++...-. ....+...++..+..++. +.+.++++.++.|+.++... ...++ .+ +
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s-~~~nI----kS-G 1221 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS-RVNNV----KS-G 1221 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHhhh----hc-C
Confidence 34667777888888787764411 223444677888887776 55689999999999998865 22222 23 4
Q ss_pred HHHHHHhcC----CCChhhHHHHHHHHhhhhcCCCccccceec--C----CChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 146 CPRLVKLLG----HPSQSVLTQALHTVGNIARGDYSQTLYIIN--C----GALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 146 i~~l~~~L~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~----~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
.+.++..+. ++++.+...+..++..++...-. .+.. . ..+..+..+.....+.++-..|+..|.+++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 677777765 46788888899888877643211 1111 1 234444444444424555566666666552
Q ss_pred c----CCH-----------------------HHHHHHH-----hcCChHHHHH---HhhcCchhHHHHHHHHHHHhcCCC
Q 037142 216 A----GNR-----------------------EQIQAVI-----DAGLIGPLVN---LLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 216 ~----~~~-----------------------~~~~~~~-----~~~~l~~L~~---ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
. +.- .....+. ....+|.|.. +..+...+||..|+.+|..+....
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 1 000 0000000 0123343333 344678999999999987776432
Q ss_pred ----CHHHHHHHHHcCChHHHHhhc
Q 037142 261 ----THEQIKYLEREGCIKPLCDLL 281 (383)
Q Consensus 261 ----~~~~~~~l~~~~~i~~L~~ll 281 (383)
+++.-..++. +++.++++.+
T Consensus 1379 G~~Fs~~~W~~if~-~VLFPIFd~l 1402 (1780)
T PLN03076 1379 GHLFSLPLWERVFE-SVLFPIFDYV 1402 (1780)
T ss_pred hccCCHHHHHHHHH-HHHHHHHHHH
Confidence 2222223222 4566666554
No 238
>PRK14707 hypothetical protein; Provisional
Probab=93.92 E-value=12 Score=41.04 Aligned_cols=314 Identities=17% Similarity=0.101 Sum_probs=174.5
Q ss_pred hHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH-HhhcCCCCCCCh
Q 037142 19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL-SNLCGGKPRPIF 96 (383)
Q Consensus 19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L-~~l~~~~~~~~~ 96 (383)
|..++.-++. ++.--..+|+..|.....+++..+..+-..| +-..+..|.+.++...-.+++..+ ..++.+. ....
T Consensus 207 ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~ 284 (2710)
T PRK14707 207 VATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDP-GLRK 284 (2710)
T ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHH
Confidence 3444444443 4444455566666554444455555553334 555666666677665555555544 4555443 2222
Q ss_pred hhh-hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcC
Q 037142 97 DQV-RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 97 ~~~-~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~ 174 (383)
.+- .++-..+-.+-+-.+..+-..+...|..=..+ +.+..+.+-.. .+...+.-|+. +|..+...+...|..=...
T Consensus 285 al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 285 ALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred hcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 222 33444444444566666666666665543333 24433333222 34455555555 6766777777776655555
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAI 253 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l 253 (383)
++...+.+--.|+-..|..+-+=+ +...-..+...|..=..++++....+ +...+..+++-+. =++..+...++..|
T Consensus 363 d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 363 DPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred CHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 554444333334334444443444 55555555555544444555655554 3334444455454 47888888888888
Q ss_pred HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHH
Q 037142 254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIE 333 (383)
Q Consensus 254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~ 333 (383)
.--... +.+..+.+--.++...|--+-+.+|..+...+...|..=+.... .+++-|.-.+....|.
T Consensus 441 A~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~-------------~l~~a~~~q~~~~~L~ 506 (2710)
T PRK14707 441 AGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHER-------------RLRKALKPQEVVIALH 506 (2710)
T ss_pred HHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccH-------------HHHhhcCHHHHHHHHH
Confidence 776665 35555554445566666666678888888777777655544322 2445565666677888
Q ss_pred HHhcCCCHHHHHHHHHHHH
Q 037142 334 NLQRHDNYEIHEKSAKILE 352 (383)
Q Consensus 334 ~l~~~~~~~v~~~a~~~l~ 352 (383)
.|...++......|...|.
T Consensus 507 aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 507 SLSKWPDTPICAEAASALA 525 (2710)
T ss_pred HhhcCCCcHHHHHHHHHHH
Confidence 8888888876666665553
No 239
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=1.1 Score=42.66 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=111.7
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhc-CCh----HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CC
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAA-ESP----RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PR 93 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~ 93 (383)
|.+.+-|+..+.++|..|+..+.++-- .+| +-.+.+++.. ...+.++| +++-+.++..|+.-+..+.... ..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLL-EDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence 334455666899999999999998751 222 4456666555 57788899 7888889998887777666432 11
Q ss_pred CChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 94 PIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
.........+..+..-+. +...++|..+..+|..+..+ +..-.+.+. ++|++-..|.+...+|+.++...|..+=
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 111222223333332222 45578999999999999976 333334443 5678888888889999999888887664
Q ss_pred cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142 173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN 213 (383)
Q Consensus 173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n 213 (383)
.... ..+.+---.+.++..|..+ +..+-+..+..+-+
T Consensus 331 ~vra---~~f~~I~~~d~~l~~L~~d-~~~v~rr~~~li~~ 367 (1005)
T KOG1949|consen 331 AVRA---AKFWKICPMDHILVRLETD-SRPVSRRLVSLIFN 367 (1005)
T ss_pred hhhh---hhhhccccHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 2221 1122222344555555554 44444333333333
No 240
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.65 E-value=0.46 Score=35.91 Aligned_cols=75 Identities=9% Similarity=-0.059 Sum_probs=61.9
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhc
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~ 303 (383)
.+..+..-+.++++.+...|..+|-.+..+++......+.+.+++.-|++++.. .++.|+..++..+..-....
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355667777889999999999999999999888888888888999999999963 46789999988887776544
Q ss_pred h
Q 037142 304 E 304 (383)
Q Consensus 304 ~ 304 (383)
.
T Consensus 119 ~ 119 (139)
T cd03567 119 P 119 (139)
T ss_pred c
Confidence 3
No 241
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.62 E-value=0.52 Score=35.92 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=63.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l 351 (383)
.+..|..-+.++++.++..|+..|..++..++.. +...+....+++.|..+... .+..|++++..++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4666777777899999999999999999877643 66667788899999999887 7889999999999
Q ss_pred HHhcCCCCCCC
Q 037142 352 ETYWCGRVVGP 362 (383)
Q Consensus 352 ~~~~~~~~~~~ 362 (383)
..+......+|
T Consensus 106 ~~W~~~f~~~~ 116 (144)
T cd03568 106 KQWADEFKNDP 116 (144)
T ss_pred HHHHHHhCCCc
Confidence 98876655444
No 242
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.48 E-value=0.95 Score=36.70 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142 204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC 278 (383)
Q Consensus 204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~ 278 (383)
...++..+..++++ |+.+..+++..+--.+...+.. +..-+|..+..+|+.+..++++..+..+....++|.++
T Consensus 117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34566666666655 4777777777765455555542 24568889999999999999989999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHH-----HHHhcCCCHHHHHHHHHH
Q 037142 279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKI-----ENLQRHDNYEIHEKSAKI 350 (383)
Q Consensus 279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L-----~~l~~~~~~~v~~~a~~~ 350 (383)
+.++.++.--+-.++..+..++..+.. .+.+++-++.-..+..+ .++...+...+.+.+..+
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvG----------LqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRc 262 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVG----------LQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRC 262 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 999988877777788888888765543 34556655554433322 234445555554444433
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.43 E-value=0.67 Score=32.18 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
...+..+ .++.+.+|..++..|.++..... ........++..+...++++|+-+--+|+.++..++..
T Consensus 6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4456667 67788899999999999998764 34445578999999999999999999999999999976
No 244
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.64 Score=39.63 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=102.8
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
...+.-.+..+.+.+++.....+..+..|+.. -.+....... .++-.+++-++.....|-..|+.++..+.....+..
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~f-h~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEF-HPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhh-hHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788899999999999999999987 3333333333 366788888888888999999999998876544333
Q ss_pred cceecCCChHHHHHhhc----cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 180 LYIINCGALPYLLGLLI----DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
.. -++.++..|. .+ +..++..|-.+|..++..-.. ..+++.|...+++.++.++..++....+
T Consensus 165 ~~-----~ld~lv~~Ll~ka~~d-nrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 165 DQ-----ELDDLVTQLLHKASQD-NRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HH-----HHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 32 2333443332 23 567888898988888754311 2357788888999999999998888777
Q ss_pred hcCC
Q 037142 256 ATFG 259 (383)
Q Consensus 256 l~~~ 259 (383)
+...
T Consensus 232 ~v~r 235 (334)
T KOG2933|consen 232 CVIR 235 (334)
T ss_pred ccee
Confidence 6544
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.22 E-value=0.67 Score=35.26 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=62.7
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhch
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++..|..-+.++++.++..|...|-.+..+++......+.+.+++..|..++. ..++.|+..++..+..-.....
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45566677788899999999999999999988888888888999999999987 4577899999998888776544
No 246
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.58 Score=39.89 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=100.0
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
+...+..| ++.+.+....++..+..|+...+..-......++..+++-+++....+-+.+|.++..+... -+..+...
T Consensus 90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~-ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSS-LNNSIDQE 167 (334)
T ss_pred HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34455666 67788888888888888888765443344466777777778888899999999999999876 33333332
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
.+ +.+-.|..--..++.=++..+-.+|..++.+.... .+++.|...+.+. ++.++..++.++.+...
T Consensus 168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 22 12222222223356678899999999888654322 3577888888888 89999988887777653
No 247
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.09 E-value=0.76 Score=34.98 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=62.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l 351 (383)
.+..|..-+.++++.++..|+..|..++..++. .+...+.+.++++.|..+.. ..+..|++++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT------------HFHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 566777777889999999999999999987653 36666778888999998876 67788999999999
Q ss_pred HHhcCCCCCC
Q 037142 352 ETYWCGRVVG 361 (383)
Q Consensus 352 ~~~~~~~~~~ 361 (383)
..+...-..+
T Consensus 110 ~~W~~~f~~~ 119 (142)
T cd03569 110 QAWALAFRNK 119 (142)
T ss_pred HHHHHHhCCC
Confidence 8887665444
No 248
>PRK14707 hypothetical protein; Provisional
Probab=93.07 E-value=16 Score=40.07 Aligned_cols=310 Identities=13% Similarity=0.062 Sum_probs=167.8
Q ss_pred HHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh-hh
Q 037142 23 VKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ-VR 100 (383)
Q Consensus 23 ~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~ 100 (383)
+.-|+. ++..+...|+..|..-..++++.++.+-..| +...+.-+.+.++...-+.+...|..=..+++.....+ -.
T Consensus 337 LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q 415 (2710)
T PRK14707 337 LNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ 415 (2710)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh
Confidence 334443 7777788888777766666778887775444 66677777678877777777776654444443333333 35
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccc
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
++-..|-.+-+-++..+...+...|..-.-+ +.+..+.+-..+ +...+.-++. +|..+-..+...|..=..+.....
T Consensus 416 ~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~ 493 (2710)
T PRK14707 416 GVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLR 493 (2710)
T ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHH
Confidence 5556666666677878888888877755544 345554443333 3444455555 777777666666655444444433
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
+.+--.++...|..+-+.++.......+.++-+.+.... .....+-..++...+-.+.+.++......++..|......
T Consensus 494 ~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~ 572 (2710)
T PRK14707 494 KALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLAD 572 (2710)
T ss_pred hhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhc
Confidence 322222344444444445534445555666666665322 2222211222222233334456777778888788776554
Q ss_pred CCHHHHHHHHHcCChHHHHhhc-CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142 260 GTHEQIKYLEREGCIKPLCDLL-LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH 338 (383)
Q Consensus 260 ~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 338 (383)
.+..... +...-+..+++.| +.++......++..|...+...... +.-+..-+.-..+..+..-
T Consensus 573 -~~~~~~~-L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~l-------------r~~l~~q~lan~lNALSKW 637 (2710)
T PRK14707 573 -EPQLPKD-LHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDL-------------RKELDPVDVTNVLNALSKW 637 (2710)
T ss_pred -chhhHHh-hhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhh-------------hhhccHHHHHHHHhhhhcC
Confidence 2333333 3444556666655 4566555555555555444433222 1113233333444555555
Q ss_pred CCHHHHHHHHHHH
Q 037142 339 DNYEIHEKSAKIL 351 (383)
Q Consensus 339 ~~~~v~~~a~~~l 351 (383)
++.+..+.+..-|
T Consensus 638 P~s~~C~~Aa~rL 650 (2710)
T PRK14707 638 PGTEVCAEVARLL 650 (2710)
T ss_pred CCchHHHHHHHHH
Confidence 5555544444443
No 249
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.00 E-value=0.56 Score=32.56 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=57.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142 146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE 220 (383)
Q Consensus 146 i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~ 220 (383)
++..+..+.++.+.++..++..|+.+..... ....-..+++..+...++++ ++-+--+|+..+..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4667778889999999999999999997766 11122236778888889998 999999999999999876544
No 250
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.97 E-value=1.1 Score=36.91 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhccCCCchHH-HHHHHhCcHHHHHHhcCC-----C----------ChhhHHHHHHHHhhhhcCCCcc
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEI-QAVIEAGVCPRLVKLLGH-----P----------SQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~i~~l~~~L~~-----~----------~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
..+|++++-++.|++.+.+-... +.+.- -++..+++..-. . .-+-+..++.+|+.++-.+. +
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~-N 157 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIEN-N 157 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheecc-C
Confidence 36677778888887754211111 11111 133334443321 1 12457889999999986544 4
Q ss_pred ccceecCC-------ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCch
Q 037142 179 TLYIINCG-------ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVF 243 (383)
Q Consensus 179 ~~~l~~~~-------~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~ 243 (383)
.+.++.++ ++..|..++....++..|+-|+..|.+++.++......+. +.+.+..|+..+.....
T Consensus 158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 55566654 3445666666665888999999999999999877765554 78889999999876543
No 251
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.85 E-value=0.65 Score=45.31 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=91.1
Q ss_pred chhHHHHHhhccCCHH--HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHHhhhhcC
Q 037142 101 PCLPTLAQLVHSNDEH--VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~~ 174 (383)
..+..+.+++.+.... -...++..+...... +... .+..+..+++. +++.+...|+-+++.+...
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~---Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRR---PTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCC---CCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 3566677777765422 222333333333322 2211 35566666654 4567888888787777632
Q ss_pred CCcc---------ccceecCCChHHHHHhhc----cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142 175 DYSQ---------TLYIINCGALPYLLGLLI----DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241 (383)
Q Consensus 175 ~~~~---------~~~l~~~~~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 241 (383)
.-.. ........+++.+...+. .. +..-+..++++|+|+... ..++.+..++...
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~ 533 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGK 533 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTS
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhc
Confidence 1111 111222345666666665 33 567888899999999532 2566666666654
Q ss_pred ---chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHH
Q 037142 242 ---VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKALE 297 (383)
Q Consensus 242 ---~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l~ 297 (383)
+..+|..|++++..++... ++. +.+.|+.++.+ .++++|..|...|.
T Consensus 534 ~~~~~~~R~~Ai~Alr~~~~~~-~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 534 EEVPHFIRVAAIQALRRLAKHC-PEK--------VREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp S-S-HHHHHHHHHTTTTGGGT--HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhhcC-cHH--------HHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 7889999999999887653 222 34455555543 46788887765543
No 252
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.75 E-value=7.4 Score=35.24 Aligned_cols=267 Identities=12% Similarity=0.018 Sum_probs=133.6
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHHhcC---ChHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHH
Q 037142 30 SDDIRMQSVWALGNIAAESPRFRDLVLGEA---ALIPLLTQLN-NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPT 105 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~L~~~L~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 105 (383)
+..+..+|+++|+.+.... +....+-+.- ++...+..+. .+.+..+....+|+|..=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6788999999999988643 4433332221 2344455552 233566777777777652222111122222333444
Q ss_pred HHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc------
Q 037142 106 LAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ------ 178 (383)
Q Consensus 106 l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~------ 178 (383)
+..+-+ -++..+....+.++.++..+ .+.....-.. .-++.++..+-+....++..|...+..+...-+..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q-~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQ-FPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 444433 45678888899999999977 3322111111 25677777777777777777666555443221110
Q ss_pred ----ccceecCC-----ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142 179 ----TLYIINCG-----ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEA 249 (383)
Q Consensus 179 ----~~~l~~~~-----~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 249 (383)
.+.....+ +.+.+..++.+. +......-+|..--+..+++....--.-...+...-.+++++++.+|..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHH
Confidence 11111122 233456666663 22222222222222222222111111113345555556678899999988
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHcCChHHHHhhcCCC-CH----HHHHHHHHHHHHHHH
Q 037142 250 AWAISNAT--FGGTHEQIKYLEREGCIKPLCDLLLCP-DP----QIVTVCLKALENILK 301 (383)
Q Consensus 250 ~~~l~~l~--~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~----~v~~~al~~l~~l~~ 301 (383)
..+=..+. ...+.......++- +..++...++.+ .. ++...++..+++++-
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 55433332 22222222222221 344555555533 33 667777777777774
No 253
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.65 E-value=2.9 Score=40.43 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=82.9
Q ss_pred hhHHHHHhhccC----CHHHHHHHHHHHHHhccCC--CchHH-HHHHHhCcHHHHHHhcC----CCChhhHHHHHHHHhh
Q 037142 102 CLPTLAQLVHSN----DEHVMSNACWGLSLLCDGG--KNDEI-QAVIEAGVCPRLVKLLG----HPSQSVLTQALHTVGN 170 (383)
Q Consensus 102 ~i~~l~~ll~~~----~~~~~~~~~~~l~~l~~~~--~~~~~-~~~~~~~~i~~l~~~L~----~~~~~v~~~a~~~L~~ 170 (383)
.+..+..+++++ .+.++..++.+++.+.... ..+.. ..+.+ .+++.+...|. ..+..-+...+++|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 566677777643 4567777777776665421 11111 11222 25556555553 3566667888999998
Q ss_pred hhcCCCccccceecCCChHHHHHhhc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHH
Q 037142 171 IARGDYSQTLYIINCGALPYLLGLLI-D-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIK 246 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~i~~l~~ll~-~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~ 246 (383)
+... ..++.+..++. . ..+..+|..|+++|..++...+... -+.+++++.+ .++++|
T Consensus 473 ~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHH
Confidence 8532 23555666665 2 1256799999999999876443433 3345666654 578899
Q ss_pred HHHHHHHHHh
Q 037142 247 KEAAWAISNA 256 (383)
Q Consensus 247 ~~a~~~l~~l 256 (383)
..|+.+|...
T Consensus 534 iaA~~~lm~t 543 (574)
T smart00638 534 MAAVLVLMET 543 (574)
T ss_pred HHHHHHHHhc
Confidence 9988888665
No 254
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.64 E-value=0.38 Score=38.66 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=60.7
Q ss_pred chHHHHHHHhCcHHHHHHhcCC---------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHH
Q 037142 134 NDEIQAVIEAGVCPRLVKLLGH---------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIK 204 (383)
Q Consensus 134 ~~~~~~~~~~~~i~~l~~~L~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~ 204 (383)
..-++.+++.|++..|+..|.. .+......+++||..++.........+-..+++..+...+.++ +..++
T Consensus 97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r 175 (187)
T PF06371_consen 97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTR 175 (187)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHH
T ss_pred chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHH
Confidence 3456677788888888888743 4557888899999999866554444445578999999999988 99999
Q ss_pred HHHHHHHHHHh
Q 037142 205 NYACWIISNIT 215 (383)
Q Consensus 205 ~~a~~~l~nl~ 215 (383)
..++.+|+.+|
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 255
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.61 E-value=7.9 Score=38.38 Aligned_cols=323 Identities=11% Similarity=0.035 Sum_probs=162.6
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC------CCChhhhhch
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP------RPIFDQVRPC 102 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~ 102 (383)
.|.-+...++..|..++.+. .+...+++.|++..|+..-.-+ +...-...+|..+..... .....++..+
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~v 440 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQV 440 (1516)
T ss_pred ccccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHH
Confidence 45556677888888888665 7777888888887777665322 111222233333333221 1123445667
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--------C-----------ChhhHHH
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--------P-----------SQSVLTQ 163 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--------~-----------~~~v~~~ 163 (383)
+..-+.++.-.....+.++..++...... ..-...+-....++.|+.++++ . +.+....
T Consensus 441 v~~~~~l~~cs~~~~~~~~~~ff~~~f~f--rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~h 518 (1516)
T KOG1832|consen 441 VKLAIELLDCSQDQARKNSALFFAAAFVF--RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFH 518 (1516)
T ss_pred HHHHHHHHhcchhhccchHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhh
Confidence 77777777744433443333222211111 1111112122344555555532 1 1122223
Q ss_pred HHHHHhhhhc-----CCCccccceecCCChHHHHHhhccccc-----hhHHHHHHHHHHHHhcCCH-------HHHHHHH
Q 037142 164 ALHTVGNIAR-----GDYSQTLYIINCGALPYLLGLLIDNHK-----TSIKNYACWIISNITAGNR-------EQIQAVI 226 (383)
Q Consensus 164 a~~~L~~l~~-----~~~~~~~~l~~~~~i~~l~~ll~~~~~-----~~~~~~a~~~l~nl~~~~~-------~~~~~~~ 226 (383)
.|.+|+..-. ..+.....-++.+..+..+.-+..... ...-+..++-+-.+....+ ...+.++
T Consensus 519 tC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenfl 598 (1516)
T KOG1832|consen 519 TCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFL 598 (1516)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHH
Confidence 4444543321 112222223334444444443332211 1222334444444333222 2344455
Q ss_pred hcCChHHHHHHhhcC--------chhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CChHHHHhhcC----CCCH
Q 037142 227 DAGLIGPLVNLLQNA--------VFYIKKEAAWAISNATFGGTHEQIKYLERE--------GCIKPLCDLLL----CPDP 286 (383)
Q Consensus 227 ~~~~l~~L~~ll~~~--------~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~--------~~i~~L~~ll~----~~~~ 286 (383)
..+++..+..+...+ ..+....|..+|+-+... ++....+... .++..+++... ..|+
T Consensus 599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 666777777766532 234555666666655554 2333333221 24555555433 2388
Q ss_pred HHHHHHHHHHHHHHHhchhcccC--------------cCC--------CCcccHHHHHHHHhccHHHHHHHhcCCCH---
Q 037142 287 QIVTVCLKALENILKVGEAEKNT--------------DTD--------IGDVNQYAQLVEEAKGLEKIENLQRHDNY--- 341 (383)
Q Consensus 287 ~v~~~al~~l~~l~~~~~~~~~~--------------~~~--------~~~~~~~~~~l~~~~~~~~L~~l~~~~~~--- 341 (383)
+++..|+.+|.|++...+...+. +.. .....+.+...+..+|+..|..|+..+++
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 99999999999998765322111 000 01123445556677899999999887553
Q ss_pred --HHHHHHHHHHHHhcCCCC
Q 037142 342 --EIHEKSAKILETYWCGRV 359 (383)
Q Consensus 342 --~v~~~a~~~l~~~~~~~~ 359 (383)
.++..|...|-.+..++.
T Consensus 757 aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHHHhccccCcH
Confidence 588888888887777665
No 256
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.55 E-value=2.5 Score=33.67 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=80.4
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-------------------CChHHHHHHhcCCCChhHHHHH
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-------------------AALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-------------------g~i~~L~~~L~~~~~~~~~~~a 80 (383)
+.+--++.++++.+|..|+.++..+..+...+-...-+. ..-..|+..|....+..+..+.
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 344445668999999999999999886654333222211 1123345556555677888899
Q ss_pred HHHHHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 81 TWTLSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 81 ~~~L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
+.++..+....|.. .......++..+..++.+.|.+++..++.++..+...
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999999987544 4455577778888888899999999999999888754
No 257
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.44 E-value=1.3 Score=36.04 Aligned_cols=137 Identities=7% Similarity=0.112 Sum_probs=90.4
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc----cchhHHHHHHHHHHHHhcCCH-HHHHHHHhcCChHHHH
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN----HKTSIKNYACWIISNITAGNR-EQIQAVIDAGLIGPLV 235 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~----~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~ 235 (383)
...++..|..++++. +....++++.+--.+..++... ..+.+|..++++++.+..+++ .....+....++|.+.
T Consensus 117 vcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345666666666554 4566678877655555665432 246788899999999998654 5555556899999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CChHHHHhh-cCCCCHHHHHHHHHHHHHHH
Q 037142 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE--------GCIKPLCDL-LLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~--------~~i~~L~~l-l~~~~~~v~~~al~~l~~l~ 300 (383)
.++..++.--+.-|+..+..+..+ ....+++++. .++..++.- .+.+...+.+.++++-.+++
T Consensus 196 rIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 999999888888888888888765 4555655541 223333332 23455566666666655554
No 258
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.43 E-value=1.1 Score=41.67 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=72.0
Q ss_pred cCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcc
Q 037142 228 AGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307 (383)
Q Consensus 228 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~ 307 (383)
.+++..++.-..+++..||..++..|+-+...- ..+...+-++++..|.+-+-+.++-|+..|+.+|+.+=+...+..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 456777777778889999999999998887552 234444455677777777778889999999999998875443321
Q ss_pred cCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 037142 308 NTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKI 350 (383)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~ 350 (383)
+..... .+.-++++|+.+|++.|.--
T Consensus 168 ---------n~~~n~--------l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 168 ---------NRIVNL--------LKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ---------HHHHHH--------HHHHHhcCcHHHHHHHHHHH
Confidence 111111 12345788999998887643
No 259
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=12 Score=36.65 Aligned_cols=270 Identities=14% Similarity=0.053 Sum_probs=132.3
Q ss_pred HHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHh--cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 20 PIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLG--EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 20 ~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
..+.++|.++ |.-++-.+++++.-...|-.-..+.+.. .+....+.+++..-+.-+.+...+..++.+.........
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 4567777774 6677777888887766543211122111 233445566664444556677777777777654311111
Q ss_pred hhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCC--CchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHH
Q 037142 97 DQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGG--KNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTV 168 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L 168 (383)
.....+++.+-.+=+ .+.+-++...+.++.++...- .+..... ++=.++++--+ +.....+.+...-
T Consensus 609 P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~-----fL~pVIel~~D~~sP~hv~L~EDgmeLW 683 (978)
T KOG1993|consen 609 PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP-----FLYPVIELSTDPSSPEHVYLLEDGMELW 683 (978)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH-----HHHHHHHHhcCCCCCceeehhhhHHHHH
Confidence 122223333322222 344667777888888877541 1111111 12222333222 1222333344333
Q ss_pred hhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHH
Q 037142 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE 248 (383)
Q Consensus 169 ~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 248 (383)
.....+.+.....+. +++|.+...+... .+.+ ..++.++....--+......-...|+...+.+++.+-..+-...
T Consensus 684 ~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~a 759 (978)
T KOG1993|consen 684 LTTLMNSQKLTPELL--LLFPHLLYIIEQS-TENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQA 759 (978)
T ss_pred HHHHhcccccCHHHH--HHHHHHHHHHHhh-hhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333333222232 5678888887654 3333 34444554433222122222223566777777776543333344
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHHHHH
Q 037142 249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALENIL 300 (383)
Q Consensus 249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~ 300 (383)
.+.++..+... .+........++++.++..+- .+.|.+.-.-+..+.++.
T Consensus 760 vLkiveili~t--~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 760 VLKIVEILIKT--NPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred HHHHHHHHHhh--hHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 45555555543 345555566778888777543 345555555555555444
No 260
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.18 E-value=1.1 Score=43.63 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=82.5
Q ss_pred hhHHHHHhhc----cCCHHHHHHHHHHHHHhccCCCch--------HHHHHHHhCcHHHHHHhcC----CCChhhHHHHH
Q 037142 102 CLPTLAQLVH----SNDEHVMSNACWGLSLLCDGGKND--------EIQAVIEAGVCPRLVKLLG----HPSQSVLTQAL 165 (383)
Q Consensus 102 ~i~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~~~i~~l~~~L~----~~~~~v~~~a~ 165 (383)
.+..+..+++ ..++.++..++.+++.+....... .........+++.+...+. ..+..-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 4555555555 345677777777777666431001 0011122235666666665 36678888999
Q ss_pred HHHhhhhcCCCccccceecCCChHHHHHhhccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--C
Q 037142 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDN--HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--A 241 (383)
Q Consensus 166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~--~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~ 241 (383)
++|+|+.. + ..++.+..++... ....+|..|++++..++...+... .+.++.++.+ .
T Consensus 512 kaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e 572 (618)
T PF01347_consen 512 KALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS
T ss_pred HHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCC
Confidence 99999952 1 3467777766543 267889999999999977665443 3456777765 4
Q ss_pred chhHHHHHHHHHHHh
Q 037142 242 VFYIKKEAAWAISNA 256 (383)
Q Consensus 242 ~~~v~~~a~~~l~~l 256 (383)
+.++|..|..+|...
T Consensus 573 ~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 573 DPEVRIAAYLILMRC 587 (618)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHhc
Confidence 788999998888663
No 261
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.96 E-value=1.3 Score=33.53 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=60.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK 346 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~ 346 (383)
.+..+..-+.++++.++..|+..|..++..++. .+...+...+++..|..+... .+..|+++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~------------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE------------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 466677778899999999999999999987764 366667788888888888853 56889999
Q ss_pred HHHHHHHhcCCCCC
Q 037142 347 SAKILETYWCGRVV 360 (383)
Q Consensus 347 a~~~l~~~~~~~~~ 360 (383)
+..++..+-.....
T Consensus 107 il~li~~W~~~f~~ 120 (139)
T cd03567 107 IIELLYSWTLELPH 120 (139)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988765543
No 262
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.89 E-value=8.9 Score=35.17 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=90.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCCc---hHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHhhhhc
Q 037142 104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKN---DEIQAVIEAGVCPRLVKLLGH-------PSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~i~~l~~~L~~-------~~~~v~~~a~~~L~~l~~ 173 (383)
..+..+...++.+-+-.++.....++.+ .+ .+.+.+.+.-+++.+-+++.+ ++.-.+.-++..|..+|+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~-~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKN-DDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcc-cchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3466777777777788888888888877 32 233446676566777788765 223334556777777776
Q ss_pred CCCc-cccceecCCChHHHHHhhccccchh------HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142 174 GDYS-QTLYIINCGALPYLLGLLIDNHKTS------IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF 243 (383)
Q Consensus 174 ~~~~-~~~~l~~~~~i~~l~~ll~~~~~~~------~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 243 (383)
..+- ....++ +-||.+..+++...+++ +...+..+|..++.. +...+.++..|.++.+.++..-++.
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~ 166 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDG 166 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCC
Confidence 5431 111123 34788888887543444 666777888777665 5778889999999999988765433
No 263
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.27 E-value=6.8 Score=37.91 Aligned_cols=168 Identities=17% Similarity=0.127 Sum_probs=94.6
Q ss_pred hchhHHHHHhhccCCHH--HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHHhhhhc
Q 037142 100 RPCLPTLAQLVHSNDEH--VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~ 173 (383)
...+..+.+.+.++... ....++..+...... ++. ..+..+..++.+ +++.++..++-+++.++.
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~-Pt~--------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~ 426 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARY-PTE--------EILKALFELAESPEVQKQPYLRESALLAYGSLVR 426 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc-CCH--------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 34666777777765422 233333333334333 221 245666777765 356677777777777763
Q ss_pred C----CCccccceecCCChHHHHHhhcc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---cCch
Q 037142 174 G----DYSQTLYIINCGALPYLLGLLID---NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ---NAVF 243 (383)
Q Consensus 174 ~----~~~~~~~l~~~~~i~~l~~ll~~---~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~ 243 (383)
. .+... ..+-..+++.+...+.. ..+...+...+++|+|+.... .++.+..++. ..+.
T Consensus 427 ~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~ 494 (574)
T smart00638 427 RYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLST 494 (574)
T ss_pred HHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCH
Confidence 2 21111 11112355566555532 115556777899999986532 2334444444 2367
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALE 297 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~ 297 (383)
.+|..|+++|..++...+.. +.+.|+.++. ..++++|..|..+|.
T Consensus 495 ~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 495 FIRLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 89999999999887543322 3344555554 357789987766553
No 264
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.07 E-value=4.5 Score=29.72 Aligned_cols=89 Identities=12% Similarity=0.226 Sum_probs=58.8
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHH-HHhccHH
Q 037142 252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLV-EEAKGLE 330 (383)
Q Consensus 252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 330 (383)
=|++++.. +...... ++..|.+=|+.+++.|+..++..|..++..+... +...+ .....+.
T Consensus 24 Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik 85 (122)
T cd03572 24 EIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIR 85 (122)
T ss_pred HHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHH
Confidence 34455544 3333433 5778888898889999999999999999876533 33322 2233344
Q ss_pred HHHHHhc--------CCCHHHHHHHHHHHHHhcCCC
Q 037142 331 KIENLQR--------HDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 331 ~L~~l~~--------~~~~~v~~~a~~~l~~~~~~~ 358 (383)
.+.+... .++..|+..|.+++..+|.++
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 4444433 244579999999999988875
No 265
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.76 E-value=2.5 Score=31.82 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=59.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC---CCHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH---DNYEIHEKSAK 349 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~v~~~a~~ 349 (383)
.+..|..-++++++.++..|+..|..++..++. .+...+....++..|..+... .+.+|++++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~------------~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK------------PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh------------HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 466777778889999999999999999987654 356667676777778888764 57889999999
Q ss_pred HHHHhcCCCCC
Q 037142 350 ILETYWCGRVV 360 (383)
Q Consensus 350 ~l~~~~~~~~~ 360 (383)
++..+......
T Consensus 106 ll~~W~~~f~~ 116 (133)
T cd03561 106 LILAWSESFGG 116 (133)
T ss_pred HHHHHHHHhcC
Confidence 99887665443
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.66 E-value=1.2 Score=33.51 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=61.1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCH-H-HHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNY-E-IHEKSAKI 350 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~-~-v~~~a~~~ 350 (383)
.+..|..-+.++++.++..|+..+..++..++. .+...+...++++.|..+...+.. . |++++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~------------~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS------------KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH------------HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 466677777889999999999999999987653 366777888889999988776433 3 99999999
Q ss_pred HHHhcCCCCCCC
Q 037142 351 LETYWCGRVVGP 362 (383)
Q Consensus 351 l~~~~~~~~~~~ 362 (383)
+..+......+|
T Consensus 106 i~~W~~~f~~~~ 117 (133)
T smart00288 106 IQEWADAFKNDP 117 (133)
T ss_pred HHHHHHHHcCCC
Confidence 988777654433
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.29 E-value=6 Score=29.73 Aligned_cols=76 Identities=7% Similarity=-0.080 Sum_probs=62.4
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhchh
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC---PDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~~l~~l~~~~~~ 305 (383)
++..|..-+.++++.++..|..+|-.+..+++......+.+..++..|+.++.. .++.|+..++..+.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 355677778889999999999999999999887777787777888889998875 4778999999988887765443
No 268
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=20 Score=35.33 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCC--CCCCh--hh----h
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGK--PRPIF--DQ----V 99 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~--~~~~~--~~----~ 99 (383)
+||.++..|=++|...... .|..-.+++++.+.. +..++..|.-.+-|.++.. +..+. .. .
T Consensus 17 pdps~rk~aEr~L~~~e~q----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~ 86 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDR 86 (960)
T ss_pred CCCccCchHHHHHHHhccC----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHH
Confidence 6688888887777766543 355556888885554 7888999999999998844 22211 11 1
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l 171 (383)
..+-..++.++-+....++.....+++-++...-++.... ++|.|+..++..|-.+....+.+-..+
T Consensus 87 e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWpt-----Ll~dL~~~ls~~D~~~~~gVL~tahsi 153 (960)
T KOG1992|consen 87 EQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPT-----LLPDLVARLSSGDFNVINGVLVTAHSI 153 (960)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHH-----HHHHHHhhccccchHHHHHHHHHHHHH
Confidence 2344456677778888999999999999997612222222 578888888877765555555544433
No 269
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.53 E-value=2.9 Score=31.46 Aligned_cols=73 Identities=11% Similarity=-0.011 Sum_probs=59.5
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhc
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD--PQIVTVCLKALENILKVG 303 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~l~~l~~~~ 303 (383)
+..|..-+.++++.++..|...+-.+..+++......+.+.+++..|..++.... +.|+..++..+..-....
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4456667778999999999999999999988888888888899999999988653 348888888887776544
No 270
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.40 E-value=3.8 Score=32.12 Aligned_cols=110 Identities=22% Similarity=0.167 Sum_probs=72.7
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC---C
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLNNHENLSMKRIATWTLSNLCGGK---P 92 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~---~ 92 (383)
.+..+..+|.+.++.-|-.++..+...+..++ .+.+.+.+ .+..+++.|++..+..+.+.++.++..+.... |
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567788888888888888888888776431 33443333 46778889976667788888888888887544 3
Q ss_pred CCChhhh----hchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 93 RPIFDQV----RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 93 ~~~~~~~----~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
....... ..+++.+++++++ ......++.++..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 2222222 4455555565554 56666777777777765
No 271
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=23 Score=34.61 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=79.4
Q ss_pred CCChhhhhchhHHHHHhhc-----c---CCHHHHHHHHHHHHHhcc--CCCchHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 037142 93 RPIFDQVRPCLPTLAQLVH-----S---NDEHVMSNACWGLSLLCD--GGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~-----~---~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~ 162 (383)
++......|+++.+...+. + ++..-.+-+++.+.++.. . .+.....+.+.-+++.++..++++-.-++.
T Consensus 400 Krke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~it-k~sp~an~me~fiv~hv~P~f~s~ygfL~S 478 (970)
T COG5656 400 KRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFIT-KMSPAANVMEYFIVNHVIPAFRSNYGFLKS 478 (970)
T ss_pred ccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhHhhcCcccchHH
Confidence 3444556889999999884 1 123334445555555554 2 233344455555778888888998888999
Q ss_pred HHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
.+|..+..+...-++. -+-..+.+....++.+. +-.++..|.-++..+..+.
T Consensus 479 race~is~~eeDfkd~---~ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 479 RACEFISTIEEDFKDN---GILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhch
Confidence 9999999885332221 11123456667778887 8889999999988887654
No 272
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.19 E-value=4.7 Score=28.34 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=57.2
Q ss_pred HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 037142 270 REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK 349 (383)
Q Consensus 270 ~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 349 (383)
...++..|++.+..+++.....++..+..+++... ....+.+.|+.+-|.++-..-+++.+....+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 34578888888888888888889999999887543 4556889999999999998888888888888
Q ss_pred HHHH
Q 037142 350 ILET 353 (383)
Q Consensus 350 ~l~~ 353 (383)
+++.
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8764
No 273
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=20 Score=34.81 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=90.7
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCCh----hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 64 LLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIF----DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~----~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
|.+-| +-+|.+++.+|+..+.++.--. |.... ..+..-...+.++++++-+.+|..+...++.+... .-+.+.
T Consensus 179 l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~-fWe~iP 256 (1005)
T KOG1949|consen 179 LWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK-FWEMIP 256 (1005)
T ss_pred HHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HHHHcC
Confidence 44445 5678999999999998876322 32211 12355667788899999999999988887776643 122222
Q ss_pred HHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 139 AVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
..+-..++..+..-+.. ...+|+......|..+..+... ..+++ -++|.+-..+.+. .+.||.++...|..+-
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHH
Confidence 11111233344443333 4568888888888888754432 11222 2344555556666 8899999988887774
No 274
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=30 Score=37.70 Aligned_cols=272 Identities=14% Similarity=0.097 Sum_probs=133.4
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-Chhhh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-IFDQV 99 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~ 99 (383)
.++..|..+++..+-.+..+++.++..-++ ..+ -.+..+.++.-+.+..|+-.|.--.-+++.+-++.... .....
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl 956 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGS--APF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHL 956 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccc--cch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhc
Confidence 334444456666666666666666642111 111 12234556666655556655655566677776665222 23333
Q ss_pred hchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-C--ChhhHHHHHHHHh------
Q 037142 100 RPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-P--SQSVLTQALHTVG------ 169 (383)
Q Consensus 100 ~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~--~~~v~~~a~~~L~------ 169 (383)
...+..+..+.+++ ++.++..++.++..+... ..+.....++. .+..+..+|.+ + ..++...--+++.
T Consensus 957 ~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s-~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen 957 NTSVSILLALATDSTSPVVQTWSLHALALILDS-SGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC-CCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchhHH
Confidence 55677788888765 469999999999988876 44444444443 33444555543 2 2223322223332
Q ss_pred hhhcCCCcccc--------ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142 170 NIARGDYSQTL--------YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241 (383)
Q Consensus 170 ~l~~~~~~~~~--------~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 241 (383)
++........+ .-.....+-...-+++++ ++-++..++.++.++-...+.... -.-+++.+..++.+.
T Consensus 1035 alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence 22211110000 001111122222334455 888999999999887654332110 012344455544444
Q ss_pred chhHHHHHHHHHHHhcCCCCH------------------HHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHH
Q 037142 242 VFYIKKEAAWAISNATFGGTH------------------EQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILK 301 (383)
Q Consensus 242 ~~~v~~~a~~~l~~l~~~~~~------------------~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~ 301 (383)
..-.|..+...+..+...... ......-+.|.--.+..+++. .|....+.....+.++..
T Consensus 1111 ~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred hhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 333333333333333222100 000010134444555666653 355677777777777543
No 275
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=88.85 E-value=6.6 Score=33.03 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=69.0
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCC
Q 037142 14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~ 92 (383)
-+...++.++++++.++..+ -..++....+.-...-..+..|-++.|.+++.+.. +.-+|..|+.+|..+....+
T Consensus 70 re~~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 34566777777776544311 11122211111011111223466888888885333 56678899999999998877
Q ss_pred CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142 93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR 148 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~ 148 (383)
........-+-..+...+..++..+....+..+..|.-..--+.++...+.|+++.
T Consensus 146 ~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 146 ISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 66555555555555555655554444444444444442201234444555555543
No 276
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.75 E-value=0.99 Score=38.71 Aligned_cols=161 Identities=17% Similarity=0.098 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhc---CCCChhHHHHHHHHHHhhcCCCCCCChhhh-h--chh
Q 037142 32 DIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLN---NHENLSMKRIATWTLSNLCGGKPRPIFDQV-R--PCL 103 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~--~~i 103 (383)
+-+.-++..+.-++.+ +.....+...+ ....+..++. ++.....+-.++++++|+..+...+..... . .++
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL 156 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence 3355555555544443 33333333222 2344444442 234677788899999999988654433222 1 233
Q ss_pred HHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHH-HHHHHhCcHHHHHHhc-CC-CChhhHHHHHHHHhhhhcCCCc
Q 037142 104 PTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEI-QAVIEAGVCPRLVKLL-GH-PSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 104 ~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~i~~l~~~L-~~-~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
..+.....+. +..++..++..+.|++.. ..... ..-....++..+.+.+ .. .|+++...++-++++++...+.
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~-~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVL-LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH-HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 3333333333 688888999999988743 11111 0001112455666633 33 7899999999999999966654
Q ss_pred cccceecCCChHHHHHh
Q 037142 178 QTLYIINCGALPYLLGL 194 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~l 194 (383)
........|+-..+...
T Consensus 236 ~~~~~~~l~~~~~~~~~ 252 (268)
T PF08324_consen 236 AKQLAKSLDVKSVLSKK 252 (268)
T ss_dssp HHHHCCCCTHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHH
Confidence 44433333444443333
No 277
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=27 Score=34.49 Aligned_cols=159 Identities=11% Similarity=0.152 Sum_probs=82.4
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHH-------HHhc---CCCChhHHHHHHHHHH
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLL-------TQLN---NHENLSMKRIATWTLS 85 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~-------~~L~---~~~~~~~~~~a~~~L~ 85 (383)
..+|.++.+|+++...+-.+|+.++-.+-.-.+.....+... .+.+.+. ..+. +.+|+-+.+..++.+.
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 368899999999999999999999987654322212122222 2222122 2221 1223334444444333
Q ss_pred hhcCCCCCCChhhhhchhHHHHHhhccC-CHH----HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142 86 NLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEH----VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV 160 (383)
Q Consensus 86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v 160 (383)
-+=..--........+..+.+.+.-+++ +|. +.+..+.++...|.. ++.....+.+. ++|.+...+..+=.+.
T Consensus 578 i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~-~~~~vs~~e~a-L~p~fq~Il~eDI~Ef 655 (960)
T KOG1992|consen 578 ILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKA-NPSAVSSLEEA-LFPVFQTILSEDIQEF 655 (960)
T ss_pred hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcc-CchHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 2211100001112233333333333433 333 344455555556655 44444444443 7777777787777777
Q ss_pred HHHHHHHHhhhhcCCCc
Q 037142 161 LTQALHTVGNIARGDYS 177 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~ 177 (383)
.-.++..++.+...+..
T Consensus 656 iPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 88888888888765543
No 278
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.23 E-value=3.6 Score=35.59 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc-cceecCCChHHHHHhhcc
Q 037142 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT-LYIINCGALPYLLGLLID 197 (383)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~l~~ll~~ 197 (383)
....|++..-. ..+.+...... ++|.++.++++.++.++..++.+|..+....+... ..+.+.|..+.+.+.+..
T Consensus 98 ~~l~w~v~~~~---~~~~i~~~~~l-iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~ 173 (282)
T PF10521_consen 98 HVLSWIVLSQL---DRPWISQHWPL-IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFP 173 (282)
T ss_pred HHHHHHHHhcC---CcchHHHhhhH-HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHH
Confidence 34556666122 22333333332 78999999999999999999999999997655322 225667766655544321
Q ss_pred -----------ccchhHHHHHHHHHHHHh
Q 037142 198 -----------NHKTSIKNYACWIISNIT 215 (383)
Q Consensus 198 -----------~~~~~~~~~a~~~l~nl~ 215 (383)
.+...+...+.-++..++
T Consensus 174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~ 202 (282)
T PF10521_consen 174 CLYYLPPITPEDESLELLQAAYPALLSLL 202 (282)
T ss_pred HhhcCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 114456666666666663
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=87.98 E-value=10 Score=31.96 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=46.9
Q ss_pred CcHHHHHHhcCCCChh--------hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHHHHHH
Q 037142 144 GVCPRLVKLLGHPSQS--------VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNI 214 (383)
Q Consensus 144 ~~i~~l~~~L~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl 214 (383)
..++.++++++.++.- +....-.++..++. |-++.+..++.++. +.-+|..|+.++..+
T Consensus 73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l 140 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAFL 140 (249)
T ss_pred hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4678899998765431 22222333333332 45677777776552 567899999999999
Q ss_pred hcCCHHHHHHHHh
Q 037142 215 TAGNREQIQAVID 227 (383)
Q Consensus 215 ~~~~~~~~~~~~~ 227 (383)
+...+..++.+++
T Consensus 141 ~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 141 VHEGPISREEVIQ 153 (249)
T ss_pred HHcCCCCHHHHHH
Confidence 9877777776654
No 280
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.81 E-value=24 Score=33.10 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=85.5
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
+.+..++.+..++.++...+.++.++-.+.... .........++..|....... +....+..++.||+.. +-..
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S--~~g~- 249 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS--HLGH- 249 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC--ccHH-
Confidence 334444455434444455566666666655543 112233344555555553333 6666677788888865 2111
Q ss_pred HHHHhCcHHHHHHhcCC------CChhhHHHHHHHHhhhhcCCCc-cccceecCC--ChHHHHHhhccccchhHHHHHHH
Q 037142 139 AVIEAGVCPRLVKLLGH------PSQSVLTQALHTVGNIARGDYS-QTLYIINCG--ALPYLLGLLIDNHKTSIKNYACW 209 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~--~i~~l~~ll~~~~~~~~~~~a~~ 209 (383)
..+..|..+|.+ ++..+..=|+..++.+.-+... ....+--.- +++.+...++.. ++.+-.+.+.
T Consensus 250 -----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~ 323 (464)
T PF11864_consen 250 -----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILL 323 (464)
T ss_pred -----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHH
Confidence 145677777732 3556667788888887765522 222222223 678888888887 8888888888
Q ss_pred HHHHHhc
Q 037142 210 IISNITA 216 (383)
Q Consensus 210 ~l~nl~~ 216 (383)
.+.++..
T Consensus 324 ~i~~ll~ 330 (464)
T PF11864_consen 324 LINRLLD 330 (464)
T ss_pred HHHHHHh
Confidence 8888874
No 281
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.43 E-value=2.7 Score=41.74 Aligned_cols=131 Identities=13% Similarity=0.163 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHh
Q 037142 30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQL 109 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~l 109 (383)
.+.++.++.-.|++++-......+.. +|.|++-|..+....++.+.+-+++-+|.+. .......+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~-----~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRL-----MPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 36788899999999997666655544 6899999976777788888888888888753 12346689999999
Q ss_pred hccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 110 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
|.++++-+|++++-.|.+|... +..++-- .++=.++.-|-+.++.++..+=.+++.+...
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G--~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQF---GIVKWNG--ELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhh---hhhhcch--hhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999965 2222211 1222333334456677888887777777643
No 282
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.37 E-value=32 Score=33.98 Aligned_cols=261 Identities=16% Similarity=0.123 Sum_probs=132.3
Q ss_pred ChHHHHHHHHHHHHHhcC--ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh---hhhchhH
Q 037142 30 SDDIRMQSVWALGNIAAE--SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD---QVRPCLP 104 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~ 104 (383)
..-+|+..+|.++.-.+. ..+.+..+ -..+++++++..|.-++-.++.++.-+..+-...... .......
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~ 574 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFV 574 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHH
Confidence 346788899999887752 12222222 3567888854447777888888888777665333222 2255666
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccc
Q 037142 105 TLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLY 181 (383)
Q Consensus 105 ~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 181 (383)
.+.++++. +.-+.+..++..+..+... ..+.+...... +++.+-.+-+ ++++-++.+.+.+|.+++..-.....
T Consensus 575 ~lfkll~~~~e~Dtk~~VL~~ls~lI~r-~~e~I~P~~~~-ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~- 651 (978)
T KOG1993|consen 575 LLFKLLKAVEECDTKTSVLNLLSTLIER-VSEHIAPYAST-IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF- 651 (978)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHhhhHHHHH-HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc-
Confidence 66777763 3456677788888888766 44444332221 3333222222 25667788889999999854332211
Q ss_pred eecCCChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 182 IINCGALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 182 l~~~~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
.. ..++-+++.+-.+.+ +..+.+.+...=+....+.+.....+ .+++|.+...+......++. +...+..-.-
T Consensus 652 ~~-~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l--l~L~p~l~~~iE~ste~L~t-~l~Ii~sYil 727 (978)
T KOG1993|consen 652 EF-YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL--LLLFPHLLYIIEQSTENLPT-VLMIISSYIL 727 (978)
T ss_pred cc-hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH--HHHHHHHHHHHHhhhhhHHH-HHHHHHHHHh
Confidence 11 122333333322221 22233333322222222222222222 23566666666544333322 2222221111
Q ss_pred CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
-.+...... ...|+.+.+.+++.+-..+-....+..+..++...
T Consensus 728 Ld~~~fl~~-y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~ 771 (978)
T KOG1993|consen 728 LDNTVFLND-YAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTN 771 (978)
T ss_pred hccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Confidence 112232222 33467777888776555555555666666665543
No 283
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.13 E-value=44 Score=35.43 Aligned_cols=148 Identities=16% Similarity=0.057 Sum_probs=91.0
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHH
Q 037142 144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ 223 (383)
Q Consensus 144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~ 223 (383)
+++|.|-.-|.+++..++..|...++.+......... =-........+.-+.+. +..+|..++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 5889999999999999999999999999765543211 00113344445555566 889999999999888776655443
Q ss_pred HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
.... .+.--..+.++.+|.....++..+... .-.... ... .+..+-+-+.++...||..|+..|..+...
T Consensus 337 ~~~~-----~~~l~~~~~D~~~rir~~v~i~~~~v~--~~~l~~-~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTI-----LLALRERDLDEDVRVRTQVVIVACDVM--KFKLVY-IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHH-----HHHHHhhcCChhhhheeeEEEEEeehh--Hhhhhh-hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3211 111112234555444433222222111 111122 222 566666677788999999999999988874
No 284
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=86.92 E-value=13 Score=35.16 Aligned_cols=223 Identities=14% Similarity=0.038 Sum_probs=120.4
Q ss_pred cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-----------CCChhhHHHHHHHHhhhhcCCCcccc
Q 037142 112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-----------HPSQSVLTQALHTVGNIARGDYSQTL 180 (383)
Q Consensus 112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~ 180 (383)
+++.++...+-..|..+..... +..++..|+.+.. .-++.++...+..|+.=. . .
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e--------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~---~---A 313 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE--------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV---I---A 313 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC--------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH---H---H
Confidence 4456677777777766664311 1123444444433 135566655555553311 1 0
Q ss_pred ceecCCChHHHHHhhccc-cchhHHHHHHHHH---HHHhcCCHHHHHHHHhcCChHHHHHHhh--------cCchhHHHH
Q 037142 181 YIINCGALPYLLGLLIDN-HKTSIKNYACWII---SNITAGNREQIQAVIDAGLIGPLVNLLQ--------NAVFYIKKE 248 (383)
Q Consensus 181 ~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l---~nl~~~~~~~~~~~~~~~~l~~L~~ll~--------~~~~~v~~~ 248 (383)
.-.-...+..+...+.+. .+.+++..++..+ .......+...-..+...+...+...+. ..+...|..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 001123344444444333 2456676776666 5554433222222222223333333332 247789999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhcc
Q 037142 249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKG 328 (383)
Q Consensus 249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (383)
+..+|+.++.... .... -+-+++..|++.+..++++++..+-.||..++......... ...-.... .
T Consensus 394 aYe~lG~L~~~~p-~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~------~~~~~~~~----~ 460 (501)
T PF13001_consen 394 AYETLGLLAKRAP-SLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD------EDEQKRLL----L 460 (501)
T ss_pred HHHHHHHHHccCc-cccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc------hhHHHHHH----H
Confidence 9999999998743 2211 12357889999998889999999888988888765432210 00000000 0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142 329 LEKIENLQRHDNYEIHEKSAKILETYWCGRVVG 361 (383)
Q Consensus 329 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 361 (383)
...+.....+....++..|.+....+|..++.+
T Consensus 461 ~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~ 493 (501)
T PF13001_consen 461 ELLLLSYIQSEVRSCRYAAVKYANACFPFSDVP 493 (501)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence 111222333555668899999999999887754
No 285
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.69 E-value=23 Score=31.62 Aligned_cols=195 Identities=10% Similarity=0.007 Sum_probs=105.1
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
.++..+..++.++.++......+.++..-+... .......++..+.+-+.+..+.+|+..+.++........+....
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 345677888877778887777777766555432 22334667888888888888889999998888887510112222
Q ss_pred HHHHhCcHHHHHHhcCC----CChhhH---HHHHHHHhhhhcCCCccccc--------eec--CCC--hHHHHHhhcccc
Q 037142 139 AVIEAGVCPRLVKLLGH----PSQSVL---TQALHTVGNIARGDYSQTLY--------IIN--CGA--LPYLLGLLIDNH 199 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~----~~~~v~---~~a~~~L~~l~~~~~~~~~~--------l~~--~~~--i~~l~~ll~~~~ 199 (383)
.+.. .++|.+...++. +-+... ..+..++..+.......... ..+ ..+ -+.+..-+ .
T Consensus 99 ~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 99 KFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 3333 267777777743 222211 11111111111111100000 000 000 01122221 2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCC
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~ 260 (383)
+++-....++++..+..+.+.....-........++-++-++ ...+|+.|..++..+....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 445566667777666554322221111223455677777776 8999999999999988764
No 286
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.67 E-value=15 Score=29.51 Aligned_cols=66 Identities=23% Similarity=0.163 Sum_probs=53.9
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
++.++++. -+++..++..|+.++..+.+..-.. -...+|.++.+..++++.++..|...+..+.+.
T Consensus 10 l~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvn----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 10 LKNILELC-LSSDDSVRLAALQVLELILRQGLVN----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCC----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 55667766 5778999999999999988765111 134899999999999999999999999999876
No 287
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=86.21 E-value=28 Score=32.25 Aligned_cols=277 Identities=11% Similarity=0.088 Sum_probs=126.1
Q ss_pred hHHHHHhhCC----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC---
Q 037142 19 VPIFVKLLAS----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK--- 91 (383)
Q Consensus 19 i~~L~~lL~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~--- 91 (383)
+..|...+.. +++.+-....+++..+-.+-......++.. .+..+....++..|+..-+....+++.+.+..
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 3444444433 344455555555554444333333333322 23333333334447777776666666665443
Q ss_pred -CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142 92 -PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170 (383)
Q Consensus 92 -~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~ 170 (383)
+.....+...++|.+...|+.+-.+..-++...++.+.+....+.....+.. +++.++.----+...-.-...+.|..
T Consensus 107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~-L~~~Ll~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQ-LFPPLLSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGG-GHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHH-HHHHHcCcchhccCCCcCcHHHHHHH
Confidence 2222345678899999999988778888888888877765121122211111 23332211100111222445556666
Q ss_pred hhcCCCccccceecCC----ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH-HHHHHHhcCChHHHHHHhh-cCchh
Q 037142 171 IARGDYSQTLYIINCG----ALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE-QIQAVIDAGLIGPLVNLLQ-NAVFY 244 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~----~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~L~~ll~-~~~~~ 244 (383)
+....+.. +...+ ++..+-+++.+. . .-..+...|..+...-+. ..+..+ ..++..+..-++ +...+
T Consensus 186 ~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 186 YIKKDPSF---IVANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHGGG-------S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HH
T ss_pred HHHhCchh---hcchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHH
Confidence 65444432 23233 334444555555 2 224566777776654332 222221 123333444444 34566
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHH---cCChHHHHhhc-----C-CCCHHHHHHHHHHHHHHHHhch
Q 037142 245 IKKEAAWAISNATFGGTHEQIKYLER---EGCIKPLCDLL-----L-CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~~~~~~~l~~---~~~i~~L~~ll-----~-~~~~~v~~~al~~l~~l~~~~~ 304 (383)
.++.-+..++.++...+++..-..++ .|+...++.-+ + -..+.-++.+.-++.+++..++
T Consensus 259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~ 327 (435)
T PF03378_consen 259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP 327 (435)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence 66666666666655434454444444 24444444421 1 1223335566667777775443
No 288
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.01 E-value=6 Score=30.04 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=58.3
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHH---HHHHHHHHHHHHHHhc
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQ---IVTVCLKALENILKVG 303 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---v~~~al~~l~~l~~~~ 303 (383)
++..|..-+.++++.++..|..++-.+..+++......+.+..++..|..++..+ ... |+..++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3556777788899999999999999999988777777777778899999987754 322 8888888887776654
No 289
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.91 E-value=16 Score=29.27 Aligned_cols=107 Identities=14% Similarity=0.046 Sum_probs=67.5
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
++.++++.-+++..++..|+..+..+....--. -...+|.++.+. .++++.++..|...+..+.+..+..-...
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456677777899999999999998877432100 013478888888 78999999999999999988764332222
Q ss_pred hhchhHHHHHhhc----cCCHHH---HHHHHHHHHHhccC
Q 037142 99 VRPCLPTLAQLVH----SNDEHV---MSNACWGLSLLCDG 131 (383)
Q Consensus 99 ~~~~i~~l~~ll~----~~~~~~---~~~~~~~l~~l~~~ 131 (383)
...++..-..+-. +..... ....+..++.+...
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~ 123 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS 123 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc
Confidence 3334444333322 111111 45555666666654
No 290
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.89 E-value=2.4 Score=32.17 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=59.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHH---HHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYE---IHEKSA 348 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~---v~~~a~ 348 (383)
++..|..-+.++++.++..|+..+..++..++. .+...+....+++.|..+.. .+... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 466777778889999999999999999987653 35666767778888888755 34444 899999
Q ss_pred HHHHHhcCCCCCCC
Q 037142 349 KILETYWCGRVVGP 362 (383)
Q Consensus 349 ~~l~~~~~~~~~~~ 362 (383)
.++..+-......|
T Consensus 111 ~ll~~W~~~f~~~~ 124 (140)
T PF00790_consen 111 ELLQEWAEAFKSDP 124 (140)
T ss_dssp HHHHHHHHHTTTST
T ss_pred HHHHHHHHHHCCCC
Confidence 99988766654433
No 291
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=85.79 E-value=3.7 Score=36.33 Aligned_cols=94 Identities=6% Similarity=-0.007 Sum_probs=70.6
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhccc
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKN 308 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~ 308 (383)
++..++.-+.+.++.|...|...+..+..+|.......+.+.++...|..++. ...+.|+...-..+........++..
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence 46677888889999999999999999999998888889888999999999998 66888888776677666664444432
Q ss_pred CcCCCCcccHHHHHHHHhc
Q 037142 309 TDTDIGDVNQYAQLVEEAK 327 (383)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~ 327 (383)
. +....+++.+.+.|
T Consensus 126 l----sLi~~l~~klk~~g 140 (462)
T KOG2199|consen 126 L----SLISALYKKLKEEG 140 (462)
T ss_pred h----hHHHHHHHHHHHcC
Confidence 2 22334444454443
No 292
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.42 E-value=54 Score=34.80 Aligned_cols=147 Identities=12% Similarity=0.134 Sum_probs=84.0
Q ss_pred CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265 (383)
Q Consensus 186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 265 (383)
+++|.|..-|.+. +..+|..|...++.+......... --........+.-+.+.+..+|.+++....++..+. +...
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~ 335 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIA 335 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhh
Confidence 7788888888888 999999999999999865533222 001233444555556778999999999998887763 3333
Q ss_pred HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 037142 266 KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHE 345 (383)
Q Consensus 266 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~ 345 (383)
... +....+.....+.+..++..++-..+-... +...+..- .+..+-+.+.++-..|+.
T Consensus 336 ~~~---~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-----------------~~l~~~~~-ll~~~~eR~rDKk~~VR~ 394 (1266)
T KOG1525|consen 336 KAS---TILLALRERDLDEDVRVRTQVVIVACDVMK-----------------FKLVYIPL-LLKLVAERLRDKKIKVRK 394 (1266)
T ss_pred hHH---HHHHHHHhhcCChhhhheeeEEEEEeehhH-----------------hhhhhhHH-HHHHHHHHHhhhhHHHHH
Confidence 221 122233322222232332221111111110 11112222 344555666777778888
Q ss_pred HHHHHHHHhcC
Q 037142 346 KSAKILETYWC 356 (383)
Q Consensus 346 ~a~~~l~~~~~ 356 (383)
.|..-+..+|.
T Consensus 395 ~Am~~LaqlYk 405 (1266)
T KOG1525|consen 395 QAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHHH
Confidence 88777776666
No 293
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=85.38 E-value=11 Score=29.97 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=55.3
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHhhhhcC-CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142 144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222 (383)
Q Consensus 144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~ 222 (383)
..+|.+++-|...+..-+..|...+..+... ..+..-.++ ..++..+-..|.+. ++++...++.+|..++..++..-
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence 3678888888887666677777777777655 222211111 24566677778888 99999999999999977665555
Q ss_pred HHHH
Q 037142 223 QAVI 226 (383)
Q Consensus 223 ~~~~ 226 (383)
+.+.
T Consensus 116 ~aLv 119 (183)
T PF10274_consen 116 EALV 119 (183)
T ss_pred HHHH
Confidence 5544
No 294
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=84.91 E-value=4.7 Score=40.24 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 037142 158 QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNL 237 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l 237 (383)
+.++..+.-+|+++|-..+.... ..+|.+++-|.....-.+|.+.+-+++.+|.... ..-...+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHH
Confidence 34567777888888865553222 3566677666554356667666666666664331 1224568888999
Q ss_pred hhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 238 LQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 238 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
|.++++-||+++...|.++...+ ..+. --.=++..+..++ +.+++++.-|-..+..++..
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~---~vKw-~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG---IVKW-NGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh---hhhc-chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999997542 1111 1111233333333 55667777776777666654
No 295
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.86 E-value=1.2 Score=30.44 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=48.0
Q ss_pred HhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHH
Q 037142 56 LGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS 126 (383)
Q Consensus 56 ~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~ 126 (383)
.+..++.++..++.+..+.++++..+.++.++.......-......++..+.....+++.++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34455788888876677899999999999999876532222223445555555555667777777766654
No 296
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=84.81 E-value=11 Score=28.73 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=57.3
Q ss_pred hHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHhch
Q 037142 231 IGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP-LCDLLLC---PDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 231 l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~~l~~l~~~~~ 304 (383)
+..|..-+. +.++.+...|...+-.++.+++......+.+.+++.. |+.++.. .+..|+..++..+........
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 334444455 4578888999999999999998888888888899997 9999863 245888888888887776543
No 297
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=83.56 E-value=22 Score=32.92 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=61.9
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCC---Cc
Q 037142 62 IPLLTQLNN---HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGG---KN 134 (383)
Q Consensus 62 ~~L~~~L~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~---~~ 134 (383)
..|+..+.. .+|+-+.+..++++..+-..-..........++..+....+++ ++..-.+...+++.+.+.. ++
T Consensus 29 ~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~ 108 (435)
T PF03378_consen 29 QNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADP 108 (435)
T ss_dssp HHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCCh
Confidence 444555532 3466677777777666554421111222233444444444443 5666666666666555431 12
Q ss_pred hHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 135 ~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
+....+ +..++|.+...|..+-.+..-.+...|+.+.+..+
T Consensus 109 ~~v~~~-E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 109 EAVSQF-EEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp H---HH-HHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222233 44588999999998877888888888888875544
No 298
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.00 E-value=33 Score=36.10 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CC---CChhHHHHHHHHHHhhcCCC-CCCChhhh
Q 037142 27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NH---ENLSMKRIATWTLSNLCGGK-PRPIFDQV 99 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 99 (383)
..+.-+++...+.++.++.....+. ++ .| -+.+++.+. .. ....+.+.+..+|.-++.+. +..+...+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~---ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEH---LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchh---hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 3466788888888888887533221 11 12 333444432 11 24567778888888888877 66677777
Q ss_pred hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccC
Q 037142 100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~ 131 (383)
.+.++.+..+-. ..|..+--.|+..+++++..
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 888888887776 44667777777777777644
No 299
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.84 E-value=7.4 Score=33.32 Aligned_cols=183 Identities=14% Similarity=-0.029 Sum_probs=97.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh--chhHHHHHhhc----cCCHHHHHHHHHHHHHhccCCCch
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR--PCLPTLAQLVH----SNDEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~i~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
..+.+.+.+.+ .+.+--++..+.-++.+.+........ ++...+..++. +..+..+.-++++++|+..+ ..
T Consensus 66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~--~~ 142 (268)
T PF08324_consen 66 ILLLKILLSWP-PESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH--PP 142 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS--CC
T ss_pred HHHHHHHHhCC-CccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC--Cc
Confidence 44555553443 333556667666666654322211111 12344444443 34578888899999999987 33
Q ss_pred HHHHHHHh-C--cHHHHHHhcCCC---ChhhHHHHHHHHhhhhcCCCccc-cceecCCChHHHHH-hhccccchhHHHHH
Q 037142 136 EIQAVIEA-G--VCPRLVKLLGHP---SQSVLTQALHTVGNIARGDYSQT-LYIINCGALPYLLG-LLIDNHKTSIKNYA 207 (383)
Q Consensus 136 ~~~~~~~~-~--~i~~l~~~L~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~l~~-ll~~~~~~~~~~~a 207 (383)
....+..+ + ++..+....... +..++..+...+.|++...-... ..-.....+..+.. +.....+++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 44444332 1 222333333332 78899999999999973211111 10111124556666 33332488999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHH
Q 037142 208 CWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKK 247 (383)
Q Consensus 208 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~ 247 (383)
+.++|++...++.........++-..+...-. ...+.++.
T Consensus 223 LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 99999999777554443323344433333332 23444444
No 300
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.83 E-value=6.4 Score=43.93 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=111.8
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhh-hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQV-RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (383)
+.+..+...+ .++.-.++..+...+++++..+|....... ...+..+..+-.+...-+......-+..+... ....+
T Consensus 565 ~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~-~~~~i 642 (2341)
T KOG0891|consen 565 DLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS-SPVLI 642 (2341)
T ss_pred hhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH-HHHHH
Confidence 3444455555 456667788888888888887652211111 12222222222233232222222222222222 22233
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~ 217 (383)
....+ ..+..+...+.++++.+...+..+++.||...........+ ..++.+.+.+.+..+..-+..+.++++++.+.
T Consensus 643 ~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 643 SPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 33333 25567777788888889999999999999776655554555 56677777666553666778899999999864
Q ss_pred CHHHHHHHH-hcCChHHHHHHhhcC-chhHHHHHHHHHHHhcCC
Q 037142 218 NREQIQAVI-DAGLIGPLVNLLQNA-VFYIKKEAAWAISNATFG 259 (383)
Q Consensus 218 ~~~~~~~~~-~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~ 259 (383)
..-...... ...++..+...+... ...+|.++...++++...
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 422111111 123344555555443 566777888887766554
No 301
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.73 E-value=57 Score=32.91 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=109.4
Q ss_pred hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccC-----CCchHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhh
Q 037142 100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDG-----GKNDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVGNI 171 (383)
Q Consensus 100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l 171 (383)
...++.++.++. +.++.++..+...|+.+++. .+++..+.+...+.+..|+..+-.+ ..+....++..+-.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 678999999988 44688888888888888765 3666677777777778777766552 223333333333222
Q ss_pred hcCCCccccceecCC-ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcC---ChHHHHHHhhcCchhHHH
Q 037142 172 ARGDYSQTLYIINCG-ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAG---LIGPLVNLLQNAVFYIKK 247 (383)
Q Consensus 172 ~~~~~~~~~~l~~~~-~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~v~~ 247 (383)
. ++ ... ..+.. ....+..=.... ++.+....++++..-. .+..+.+.+.. .++.=...+..+=..-|.
T Consensus 269 l--~~-~r~-~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 269 L--NP-RRD-TVETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred c--Cc-ccc-cccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 2 22 111 11110 111111122222 4556666666654432 23333333322 222223333334456788
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHH--HHHHHHHHHHHHHH
Q 037142 248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQ--IVTVCLKALENILK 301 (383)
Q Consensus 248 ~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~--v~~~al~~l~~l~~ 301 (383)
..+..++.+....+....+.+...+++..+++++..-... +....-.+|.....
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~ 396 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS 396 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh
Confidence 8899999998887888888888888998888887654332 34444444444333
No 302
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=82.73 E-value=10 Score=29.01 Aligned_cols=127 Identities=9% Similarity=0.087 Sum_probs=86.9
Q ss_pred CCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhh-cCCCCHHHHHHHH
Q 037142 217 GNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDL-LLCPDPQIVTVCL 293 (383)
Q Consensus 217 ~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~al 293 (383)
++++..+.+.+.+++..+.+++.. ....++.....+++-+..+. ++..+.++++++.+..++.. ++-.+.++...=+
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 456778888899999999999987 57778888877777776554 34556777888888888775 5556778888877
Q ss_pred HHHHHHHHhchhcccCcC-C--CCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037142 294 KALENILKVGEAEKNTDT-D--IGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILET 353 (383)
Q Consensus 294 ~~l~~l~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 353 (383)
..|..+.-....+...+. + .+..| ....=..+.+|++.-|+..+..++-+
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FP----------L~~~aikf~~h~d~Mvr~avR~i~Ln 146 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFP----------LYTEAIKFYNHPDSMVRTAVRTITLN 146 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCC----------cHHHHHHhhcCcchHHHHHHHHHHHh
Confidence 888888776655443322 1 11112 12222367888998887777665543
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.42 E-value=9.4 Score=27.73 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH------hcCCCHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL------QRHDNYEIHEK 346 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l------~~~~~~~v~~~ 346 (383)
++..|..-+.++++.++..|+..|..++..++.. +...+....+...+... -...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 4666777777889999999999999999877643 55556555555554332 12357789999
Q ss_pred HHHHHHHhc
Q 037142 347 SAKILETYW 355 (383)
Q Consensus 347 a~~~l~~~~ 355 (383)
+..++..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999887653
No 304
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.13 E-value=12 Score=29.69 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=51.9
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
-.+|.+++=+...+...+--|...+..+...+..+.+-.++. .++.+|-..|.+.++++...++.+|..++...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 356666666666666666666666666655522333333232 388899999999999999999999999966544
No 305
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=82.10 E-value=25 Score=30.67 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=87.3
Q ss_pred HHHHHhCCChHHHHHhhCC-----CCh------------------HHHHHHHHHHHHHhcCChHHHH-------------
Q 037142 10 KKAVVDHGAVPIFVKLLAS-----PSD------------------DIRMQSVWALGNIAAESPRFRD------------- 53 (383)
Q Consensus 10 ~~~~~~~g~i~~L~~lL~~-----~~~------------------~i~~~a~~~L~~l~~~~~~~~~------------- 53 (383)
++.+.+.|.+|.|-++++. +.+ .++.+-++.+.+++..++....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 4678899999999988754 111 3788999999999973321111
Q ss_pred --------HHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCCC-CCh--hhhhchhHHHHHhhccC---CHHHH
Q 037142 54 --------LVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKPR-PIF--DQVRPCLPTLAQLVHSN---DEHVM 118 (383)
Q Consensus 54 --------~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~-~~~--~~~~~~i~~l~~ll~~~---~~~~~ 118 (383)
.--+.|.+..+++.+.+.+ +...+-..+.++-.+.+..+. ..+ ....|+++.++..+-++ +.++.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1113467777777775544 667777888888888887644 333 33488999988877644 35688
Q ss_pred HHHHHHHHHhccCCCchH
Q 037142 119 SNACWGLSLLCDGGKNDE 136 (383)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~ 136 (383)
....-.|+.+.++ +.+.
T Consensus 162 Q~~FDLLGELiK~-n~~~ 178 (303)
T PF12463_consen 162 QSNFDLLGELIKF-NRDA 178 (303)
T ss_pred HHHHHHHHHHHCC-CHHH
Confidence 8888899999988 5433
No 306
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=82.00 E-value=23 Score=34.04 Aligned_cols=172 Identities=10% Similarity=-0.014 Sum_probs=82.1
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHH---hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhc---hh
Q 037142 30 SDDIRMQSVWALGNIAAESPRFRDLVL---GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP---CL 103 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~i 103 (383)
.++++.-|+.+|..+..+.+.....+. ....+..++..++ .++..+-.++++|.|+..+...+ ..+... ++
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~-~~~~s~~~~i~ 633 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGR-ELFMSRLESIL 633 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHH-HHHHHHHHHHh
Confidence 355666777777776655433333222 1234445555552 45667788899999999884222 222222 22
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc----CC-CChhhHHHHHHHHhhhhcCCCcc
Q 037142 104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL----GH-PSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L----~~-~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
..+...-..++..++........|.+.- .++.-.+.+..+.+...+ .. +|-+.....+.+|++|+..++..
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~----l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVL----LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHH----HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 2222222233344444433333333311 001111123333333333 22 34456677888889998766543
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHH
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACW 209 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~ 209 (383)
.+ +.+.--++.+..-++...+....+..++
T Consensus 710 ~~-~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 710 IQ-LAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred HH-HHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 33 4443345555555543323333333333
No 307
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.95 E-value=18 Score=31.34 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=53.0
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc----C--------CCCHHHHHHHHHHHH
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL----L--------CPDPQIVTVCLKALE 297 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll----~--------~~~~~v~~~al~~l~ 297 (383)
++|.++.++.+.++.+|..++.++..+........-..+.+.|..+.+.+.+ - .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999875444423355667655544433 2 234467777888888
Q ss_pred HHHHh
Q 037142 298 NILKV 302 (383)
Q Consensus 298 ~l~~~ 302 (383)
.++..
T Consensus 200 ~L~~~ 204 (282)
T PF10521_consen 200 SLLKT 204 (282)
T ss_pred HHHHh
Confidence 88764
No 308
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=81.92 E-value=24 Score=31.60 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=82.9
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-------CHHHHHHHHHHHHHhccCCCch
Q 037142 63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-------DEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-------~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
.+...+ .+.+...+..| |..|..+. ....++|.++.++.+. +.......+..+..|..+ +.-
T Consensus 182 ~It~a~-~~~~~~~r~~a---L~sL~tD~------gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l 250 (343)
T cd08050 182 EITEAL-VGSNEEKRREA---LQSLRTDP------GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNL 250 (343)
T ss_pred HHHHHH-hCCCHHHHHHH---HHHhccCC------CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCC
Confidence 344444 23444545544 44455543 2345777777777632 677888888999999987 444
Q ss_pred HHHHHHHhCcHHHHHHhcCC----------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH-H
Q 037142 136 EIQAVIEAGVCPRLVKLLGH----------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI-K 204 (383)
Q Consensus 136 ~~~~~~~~~~i~~l~~~L~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~-~ 204 (383)
...... +.++|.++.++-. ++..+|..|...+..++........ -+...++..+.+.+.++..+.. .
T Consensus 251 ~le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 251 HLEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTH 328 (343)
T ss_pred chHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchh
Confidence 433332 3378888887732 3468999999999999965543333 2334555566666655423322 4
Q ss_pred HHHHHHHHHH
Q 037142 205 NYACWIISNI 214 (383)
Q Consensus 205 ~~a~~~l~nl 214 (383)
.-|+..|..+
T Consensus 329 YGAi~GL~~l 338 (343)
T cd08050 329 YGAIVGLSAL 338 (343)
T ss_pred hHHHHHHHHh
Confidence 4455555544
No 309
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=81.77 E-value=14 Score=28.12 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=57.2
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH-HHHHhcC---CCHHHHHHH
Q 037142 273 CIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK-IENLQRH---DNYEIHEKS 347 (383)
Q Consensus 273 ~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~l~~~---~~~~v~~~a 347 (383)
.+..|..=+. ..++.++..|+..|..++..++.. +...+..-++++. |..++.. ....|+.++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 3455555455 468889999999999999877643 5666777788887 8888763 345899999
Q ss_pred HHHHHHhcCCCCCCC
Q 037142 348 AKILETYWCGRVVGP 362 (383)
Q Consensus 348 ~~~l~~~~~~~~~~~ 362 (383)
..++..+...-..+|
T Consensus 107 l~li~~W~~~f~~~~ 121 (141)
T cd03565 107 LALIQAWADAFRGSP 121 (141)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999998876654443
No 310
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=81.70 E-value=46 Score=31.12 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=107.9
Q ss_pred hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCC---------CchHHHHHHHhCcHHHHHHhcCC----CC----hhhH
Q 037142 100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGG---------KNDEIQAVIEAGVCPRLVKLLGH----PS----QSVL 161 (383)
Q Consensus 100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~i~~l~~~L~~----~~----~~v~ 161 (383)
..+|..+.+++. ++...++.+++|.|+.+--.. -+....++-+..++...+.++-. +. +...
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 567788888887 557889999999998764220 12333444455566666666632 22 3344
Q ss_pred HHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241 (383)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 241 (383)
..++..+........ +--.+.-..+..++.-+..++++..++.....=+..+ .....++..=+.|.++.-+
T Consensus 176 kvvl~~ia~vgeS~q-----yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqSS-qsAa~fLg~WlsPpli~sL--- 246 (589)
T PF11229_consen 176 KVVLKPIATVGESYQ-----YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQSS-QSAAMFLGSWLSPPLIHSL--- 246 (589)
T ss_pred HHHHHHhhhcCCCCC-----CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhcccc-ccHHHHHHhhcCcchhhhh---
Confidence 444454443322111 1112333334444443446778887775544333333 3344444444444444333
Q ss_pred chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 242 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
+...|+.-...+.-....-++++++.+.+.-.+..+-..-.-.+++++..++..|..-.+...
T Consensus 247 s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~ 309 (589)
T PF11229_consen 247 SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPS 309 (589)
T ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCC
Confidence 445666666666666666567777877664333333333334567888888888877665444
No 311
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=81.67 E-value=39 Score=31.73 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH-hcCC
Q 037142 262 HEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL-QRHD 339 (383)
Q Consensus 262 ~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l-~~~~ 339 (383)
......+.+.++++.|+++|. ..+++++.+|...|+.++..+..........-+++++.+.+.....++.|.+. ++.+
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~ 131 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ 131 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC
Confidence 455667778999999999997 34678899999998888876653322111133568899999999888888765 5322
Q ss_pred CHHHHHHHHHHHHHhc
Q 037142 340 NYEIHEKSAKILETYW 355 (383)
Q Consensus 340 ~~~v~~~a~~~l~~~~ 355 (383)
.......+..++..+.
T Consensus 132 ~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 132 GGSSLVNGVSILIELI 147 (475)
T ss_pred CcchHHHHHHHHHHHH
Confidence 2333334444444443
No 312
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.46 E-value=24 Score=27.68 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=70.7
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC-chHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHhhhh---
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK-NDEIQAVIEAGVCPRLVKLLGHP-SQSVLTQALHTVGNIA--- 172 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~i~~l~~~L~~~-~~~v~~~a~~~L~~l~--- 172 (383)
........+.++++++++.-+..++..+...+.. . .+....-.. ..+..++..|+.+ ...+...++.++..+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~-~~~e~l~~~~~-~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQ-CSWEILLSHGS-QWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHH-hhHHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4456677788899999988888888888888866 3 222212222 3677888888874 4566777888777776
Q ss_pred cCCCccccceecC---CChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 173 RGDYSQTLYIINC---GALPYLLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 173 ~~~~~~~~~l~~~---~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
.+.++..+.+.-. +++..++.+++. ......++.++..+....
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHH 145 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHC
Confidence 3344433333322 223333333332 356667777777766544
No 313
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=81.31 E-value=22 Score=32.11 Aligned_cols=155 Identities=17% Similarity=0.060 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc----------cCCHHHHHHHHHHHHHhccC
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH----------SNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~----------~~~~~~~~~~~~~l~~l~~~ 131 (383)
..++..|.+......+..++.++.-|+++.....-.......+.|+.+.+ ..+..+...+..||+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45777774444566677888888888887644444444556666666654 23468899999999999988
Q ss_pred CCchHHHHHHHhCcHHHHHHhcCC----C-ChhhHHHHHHHHhhhhcC-CCccccceecCCChHHHHHhhccc-------
Q 037142 132 GKNDEIQAVIEAGVCPRLVKLLGH----P-SQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLLIDN------- 198 (383)
Q Consensus 132 ~~~~~~~~~~~~~~i~~l~~~L~~----~-~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~l~~ll~~~------- 198 (383)
+......+.+......+.+.+.. . -..+...-++.|.-+..- .+...+.+.+.++++.+..++.+.
T Consensus 128 -Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 128 -SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred -cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 66666666666555555555432 1 112333344444444322 233445455667777777776431
Q ss_pred -------cchhHHHHHHHHHHHHhcC
Q 037142 199 -------HKTSIKNYACWIISNITAG 217 (383)
Q Consensus 199 -------~~~~~~~~a~~~l~nl~~~ 217 (383)
++.....+++.++.|++..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeec
Confidence 1224455677777887654
No 314
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.83 E-value=5.8 Score=35.17 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=65.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l 351 (383)
++..+.+-+...++.|...|+..+..++..|++. ++.-+....+...|..++. .....|.++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 6788888899999999999999999999887754 5666777788888889988 66778888888888
Q ss_pred HHhcCCCCCCCCc
Q 037142 352 ETYWCGRVVGPQP 364 (383)
Q Consensus 352 ~~~~~~~~~~~~~ 364 (383)
..+.++...+|.-
T Consensus 114 ~eWsee~K~Dp~l 126 (462)
T KOG2199|consen 114 KEWSEEFKKDPSL 126 (462)
T ss_pred HHHHHHhccCcch
Confidence 8887766655443
No 315
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=79.59 E-value=13 Score=34.83 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCC------------CHHHHHHHHHcCChHHHHhhcCC-CC
Q 037142 220 EQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGG------------THEQIKYLEREGCIKPLCDLLLC-PD 285 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~------------~~~~~~~l~~~~~i~~L~~ll~~-~~ 285 (383)
...+.+.+.++++.|+.+|.. .+..++..|+.+|+.+.... ..+....+.+...+..|++.+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 444555579999999999974 47778999998887774321 13556677777788888885442 33
Q ss_pred HHHHHHHHHHHHHHHHhch
Q 037142 286 PQIVTVCLKALENILKVGE 304 (383)
Q Consensus 286 ~~v~~~al~~l~~l~~~~~ 304 (383)
......++..+..+++...
T Consensus 133 ~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKNN 151 (475)
T ss_pred cchHHHHHHHHHHHHHhcc
Confidence 5566677888888886653
No 316
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=79.48 E-value=40 Score=29.42 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=85.9
Q ss_pred HHHHhcCChHHHHHHhcC----------------------CCChhHHHHHHHHHHhhcCCCCCC----------------
Q 037142 53 DLVLGEAALIPLLTQLNN----------------------HENLSMKRIATWTLSNLCGGKPRP---------------- 94 (383)
Q Consensus 53 ~~~~~~g~i~~L~~~L~~----------------------~~~~~~~~~a~~~L~~l~~~~~~~---------------- 94 (383)
..+.+.|.++.|-+++.. +|+..++.+-++.+.++|...+..
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456678888888776620 122347888899999998843111
Q ss_pred ------ChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCch--HHHHHHHhCcHHHHHHhcCCC---ChhhH
Q 037142 95 ------IFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKND--EIQAVIEAGVCPRLVKLLGHP---SQSVL 161 (383)
Q Consensus 95 ------~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~i~~l~~~L~~~---~~~v~ 161 (383)
......|.+..+++.+... +...+-..+.|+-...++ .+. ....+.+.|+++.++.-+-++ +..+.
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg-~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG-ATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC-CCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1112256666677666533 567788899999999998 444 444577889999999987654 34688
Q ss_pred HHHHHHHhhhhcCCC
Q 037142 162 TQALHTVGNIARGDY 176 (383)
Q Consensus 162 ~~a~~~L~~l~~~~~ 176 (383)
......|+.|...+.
T Consensus 162 Q~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 162 QSNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHHCCCH
Confidence 889999999987765
No 317
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.88 E-value=9.5 Score=31.65 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCC--hHHHHHHHhcCChHHHHHHhc------CC--------CChhHHHHHHHHHHhhcCCCCCCC
Q 037142 32 DIRMQSVWALGNIAAES--PRFRDLVLGEAALIPLLTQLN------NH--------ENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~~L~------~~--------~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
.+|+.|+-.|.|++..- ..+-+.+. .-+++.|+...- .+ ....-++-++.+|+.|+....+.+
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~-~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIA-RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHH-HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 67888888888887421 12222221 112233333331 11 123568899999999998764444
Q ss_pred h-------hhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHH-HHHhCcHHHHHHhcCCCChhh
Q 037142 96 F-------DQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQA-VIEAGVCPRLVKLLGHPSQSV 160 (383)
Q Consensus 96 ~-------~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~i~~l~~~L~~~~~~v 160 (383)
. .....++..|.+++. .+++-.|+-++..|.+++.. +...... ..+.+.+..|+.++.+.+...
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~-~~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQG-DEAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcc-cHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 3 334567777777776 56788999999999999998 5555444 345688999999997754433
No 318
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.83 E-value=34 Score=32.45 Aligned_cols=173 Identities=12% Similarity=0.034 Sum_probs=100.5
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc--C--------CCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN--N--------HENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
++.+|...|-..|..+..+- -+..++..|..+.. . ..++.++...+..|..-... ...
T Consensus 249 ~~~~V~~~ae~~LKr~~~~~-------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~ 316 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVSL-------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATS 316 (501)
T ss_pred CcchHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhC
Confidence 55677777777777766431 12234555555552 1 12456666555555442111 112
Q ss_pred hhchhHHHHHhhccC--CHHHHHHHHHHH---HHhccCCCchHHHH---HHHhCcHHHHHH----hcCCCChhhHHHHHH
Q 037142 99 VRPCLPTLAQLVHSN--DEHVMSNACWGL---SLLCDGGKNDEIQA---VIEAGVCPRLVK----LLGHPSQSVLTQALH 166 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~--~~~~~~~~~~~l---~~l~~~~~~~~~~~---~~~~~~i~~l~~----~L~~~~~~v~~~a~~ 166 (383)
...++..+...+... +..++..++..+ .....+........ .+..++.|.+-. --...+...+..+-.
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 234555555566655 556666666666 55555422323332 333344444410 112356788999999
Q ss_pred HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
+|+.|+...+... .-+.+++..+..-|..+ .++++...-.+|+.++.
T Consensus 397 ~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 397 TLGLLAKRAPSLF--SKDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHccCcccc--cccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 9999998877532 13457788888888766 88999888888888764
No 319
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=78.16 E-value=35 Score=30.13 Aligned_cols=139 Identities=9% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHH-hc---CC----CChhHHHHHHHHHHhhcCCCCCCChhhhhchh
Q 037142 32 DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ-LN---NH----ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCL 103 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~-L~---~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i 103 (383)
.++...+..+.......++... +....+++++.. |. ++ .++++..-...++..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4566777777766654433222 335567777763 31 11 13445444444444444432223333446677
Q ss_pred HHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHH----HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 104 PTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAV----IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 104 ~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
...+.++..+ -|+.+..-...+..+... ..+..-.+ .+ .++..++..+++++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~-~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFK-LVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 7777787643 389998888888887765 21211111 11 2567788888999999999999999888743
No 320
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=78.03 E-value=13 Score=41.62 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=111.8
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
+.+..+..-+.++.-.++..+...+++++..++.+.-..+....+..+-.+- .+.-..+...+..-+..+....+....
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 3444455555556667777788888888776664333333222222222221 121122222222222222111111122
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~ 175 (383)
......+..+...+.+.+..+...+..++..||.. .........+ ..++.+.+.+.+ ++..-+..++++++++....
T Consensus 644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v-~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAV-GGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHh-ccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 22344556677777788888888899999999876 3322322233 345555555554 55666788999999998655
Q ss_pred Cccccceec-CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142 176 YSQTLYIIN-CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 176 ~~~~~~l~~-~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
.-......+ .-++..+...+.......++..++..++++....+
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 433332222 24566777777766577889999999998766553
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.62 E-value=26 Score=25.84 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCCC
Q 037142 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCDLLLCP 284 (383)
Q Consensus 206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~ 284 (383)
....-|.+++..++..... ++..|..-|++.++.||..+..+|-.++..+++.....+.+ ...|..+.+.-...
T Consensus 20 y~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPP 94 (122)
T ss_pred HHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 3344455555555444433 35577778888899999999999999999987777776655 24555555544322
Q ss_pred C--------HHHHHHHHHHHHHHH
Q 037142 285 D--------PQIVTVCLKALENIL 300 (383)
Q Consensus 285 ~--------~~v~~~al~~l~~l~ 300 (383)
| ..|+..|-.++.-+.
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHh
Confidence 2 246666666665554
No 322
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.38 E-value=43 Score=29.85 Aligned_cols=212 Identities=17% Similarity=0.114 Sum_probs=105.7
Q ss_pred CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CC
Q 037142 17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RP 94 (383)
Q Consensus 17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~ 94 (383)
.++..|..++.. .++......+.+++.-...- ..-+...++..+.+=+ .+..+.+|+.-+..++......+ ..
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl-~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGL-KDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHhhccCch
Confidence 455666666664 66666777777666544211 0001112334445555 45556688888888887776221 22
Q ss_pred ChhhhhchhHHHHHhhc----cCCHHHH---HHHHHHHHHhccCCCchHHHH-------H-HHh----CcHHHHHHhcCC
Q 037142 95 IFDQVRPCLPTLAQLVH----SNDEHVM---SNACWGLSLLCDGGKNDEIQA-------V-IEA----GVCPRLVKLLGH 155 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~----~~~~~~~---~~~~~~l~~l~~~~~~~~~~~-------~-~~~----~~i~~l~~~L~~ 155 (383)
.......++|.+.+.++ ++-+... ..++.++..+... ..+.... + .+. =.-+.+..-+
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~-~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-- 173 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW-KLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-- 173 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc-cchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--
Confidence 33445678888888775 2222211 1122222222211 1111111 0 000 0112222222
Q ss_pred CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142 156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL 234 (383)
Q Consensus 156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L 234 (383)
.+++.....++++..+..+.......-.....-..++.++.+.. ...+|+.|+..+..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 33444555666666665443322111111234566777766552 6889999999999998877664 233345556
Q ss_pred HHHhhc
Q 037142 235 VNLLQN 240 (383)
Q Consensus 235 ~~ll~~ 240 (383)
..++..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 666654
No 323
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.23 E-value=14 Score=36.88 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=95.5
Q ss_pred HHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142 191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER 270 (383)
Q Consensus 191 l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~ 270 (383)
+...+.++ +..+-...+.++.+++.-..-.... ...-++.-..-.+..-..++.....+|..++.. +++....++.
T Consensus 446 l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~-~~~~L~~l~~ 521 (727)
T PF12726_consen 446 LLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDF-DPSHLKELLS 521 (727)
T ss_pred HHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHc
Confidence 34444444 6666666777776665311000000 111222222223333346667778889999887 6777777775
Q ss_pred -cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHh------ccHHHHHHHhcC----C
Q 037142 271 -EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEA------KGLEKIENLQRH----D 339 (383)
Q Consensus 271 -~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~L~~l~~~----~ 339 (383)
.+....++.++-+++.++...|...+......... .+.+..+++.. |....+.++.+. +
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R----------~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p 591 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGR----------LEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEP 591 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcc
Confidence 78999999999999999999999999988853221 22334444332 444455555544 4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCcccccccc
Q 037142 340 NYEIHEKSAKILETYWCGRVVGPQPGLLYAGN 371 (383)
Q Consensus 340 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 371 (383)
-+.+.+...++++.+.+. ..+++|..+
T Consensus 592 ~pr~vr~~~DIi~~Lcdp-----~~GiLr~~~ 618 (727)
T PF12726_consen 592 CPRMVRCLMDIIEVLCDP-----VSGILRNRT 618 (727)
T ss_pred hHHHHHHHHHHHHHHcCC-----CCCccccCc
Confidence 455666667777766654 444555544
No 324
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=77.15 E-value=33 Score=30.68 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=61.0
Q ss_pred ChHHHHHHhcCC-----C-ChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc----------cCCHHHHHHHHH
Q 037142 60 ALIPLLTQLNNH-----E-NLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH----------SNDEHVMSNACW 123 (383)
Q Consensus 60 ~i~~L~~~L~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~----------~~~~~~~~~~~~ 123 (383)
.+|.+++++.+. . +.......+..+..|..+....-......++|.++.++- .+...+|..++.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466777776321 1 466677778888888887644444555678888887773 234789999999
Q ss_pred HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC
Q 037142 124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS 157 (383)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~ 157 (383)
.+..+++.+ ......+ ...+...+.+.+.++.
T Consensus 291 ll~~i~~~f-~~~y~~l-~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 291 LLAQICRKF-STSYNTL-QPRITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHc-CCCCCcH-HHHHHHHHHHHHcCCC
Confidence 999999762 2222222 2224556666665533
No 325
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=77.07 E-value=32 Score=35.93 Aligned_cols=233 Identities=13% Similarity=0.112 Sum_probs=131.7
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHH--------HhcCCCChhHHHHHHHHHHhh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLT--------QLNNHENLSMKRIATWTLSNL 87 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~--------~L~~~~~~~~~~~a~~~L~~l 87 (383)
+.++.|+..+-++.+++|.-+.-++..+..... ......++...+..+.- +..++--..+++.++|+|..+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 456677777778889999998888888764321 11111222211111111 111122347889999999998
Q ss_pred cCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142 88 CGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT 167 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~ 167 (383)
..+- ........+..+.+++..+.++++.-.+..+.....- ..+....+.. .+++...+.|.+.+..++..|...
T Consensus 157 l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~ai-r~d~l~~~~~-~vl~~~i~~L~ds~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 157 LKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAI-RQDLLFQLLN-LVLDFVIEGLEDSDDDVRSVAAQF 231 (1549)
T ss_pred HHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhhhhcchHHHHHHHHH
Confidence 8764 2233455777788888877777776666555433322 1222222222 267788888999999999988888
Q ss_pred HhhhhcCCCcc-ccceecCCChHHHHHhhccccchhHHHHHHHHH----HHHhcCCHHHHHHH----HhcCChHHHHHHh
Q 037142 168 VGNIARGDYSQ-TLYIINCGALPYLLGLLIDNHKTSIKNYACWII----SNITAGNREQIQAV----IDAGLIGPLVNLL 238 (383)
Q Consensus 168 L~~l~~~~~~~-~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l----~nl~~~~~~~~~~~----~~~~~l~~L~~ll 238 (383)
+.-......+. .+.+. .++..+...+..- +. ...+...+ ..++... +..+.. .+.|++|.+...+
T Consensus 232 l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~l-dd--l~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l 305 (1549)
T KOG0392|consen 232 LVPAPSIQVKLMVQKIA--KLVHTLWSFLLEL-DD--LSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFL 305 (1549)
T ss_pred hhhhhHHHHhhhHhHHH--HHHHHHHHHHHHh-hh--cchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHH
Confidence 87665433111 11111 2233333333322 11 11111122 2222222 111111 1358899999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCC
Q 037142 239 QNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 239 ~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
.+.=..++..++.++..+.+..
T Consensus 306 ~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 306 RHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9998899999999998887654
No 326
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.38 E-value=8.5 Score=29.20 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh
Q 037142 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL 195 (383)
Q Consensus 116 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll 195 (383)
-++...+.++..++...-++.-. .+++.++..++. ++......+.+|..+...-.+ .-
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp-----~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----------------~~ 60 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWP-----DFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----------------FR 60 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTST-----THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----------------SH
T ss_pred hHHHHHHHHHHHHHHHHChhhCc-----hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----------------hh
Confidence 35667777777777541011111 356677777766 355556667777666532111 00
Q ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC----chhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037142 196 IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA----VFYIKKEAAWAISNATFGGTHEQIKYLERE 271 (383)
Q Consensus 196 ~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~ 271 (383)
.......-+...-..+..- . ..+++.+.+++... +.++...+..++.......+ ...+.+.
T Consensus 61 ~~~~~~~r~~~l~~~l~~~-------~-----~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~---~~~i~~~ 125 (148)
T PF08389_consen 61 RSSLSQERRRELKDALRSN-------S-----PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP---IELIINS 125 (148)
T ss_dssp CCHSHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS----HHHHHSS
T ss_pred chhhhHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC---HHHhccH
Confidence 0000111111121222111 1 12344445555432 27788888888888887543 5555567
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHH
Q 037142 272 GCIKPLCDLLLCPDPQIVTVCLKAL 296 (383)
Q Consensus 272 ~~i~~L~~ll~~~~~~v~~~al~~l 296 (383)
++++.+++++..++ ++..|+.+|
T Consensus 126 ~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 126 NLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp SHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHcCCHH--HHHHHHHhC
Confidence 78888998884443 466676654
No 327
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=75.93 E-value=42 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHhchhcccCc---CCCCcccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCCC
Q 037142 285 DPQIVTVCLKALENILKVGEAEKNTD---TDIGDVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 285 ~~~v~~~al~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~ 360 (383)
|..+...++..+.|++...+...... .+....+.+...|.+.|+.+.|..+..+. ..+-....++++.-+|.+-+.
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 44677889999999998744322110 11335677788888999999999998876 334445778888888887764
No 328
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.57 E-value=24 Score=24.83 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=49.5
Q ss_pred hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHH
Q 037142 227 DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCL 293 (383)
Q Consensus 227 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 293 (383)
...++..|+.++..++...+.++...+..++.. +...+.+.+-|....|-++-..-++..+..+-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~--~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id 92 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS--PYAAQILRDIGAVRFLSKLRPNVEPNLQAEID 92 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC--cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHH
Confidence 455788899999988888999999999999877 56667777778888877776666666654443
No 329
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.42 E-value=22 Score=35.04 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred HHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 20 PIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 20 ~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+.|+..|+. ..+.-|..++..|+.+....+.....+.+...+..|+++|..+.+..+...|+.+|..|.=.-|..-..
T Consensus 69 K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 69 KHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 344555543 456789999999999998777788888889999999999988888889999999998888665544434
Q ss_pred hhhchhHHHHHhhc
Q 037142 98 QVRPCLPTLAQLVH 111 (383)
Q Consensus 98 ~~~~~i~~l~~ll~ 111 (383)
....++.+...++.
T Consensus 149 ~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 149 HLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666666663
No 330
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=75.24 E-value=95 Score=31.20 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=87.6
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
+...+...+.+++.......+.++..++.-..-.... ...-++.-..-.... -..+......++..++..+++....
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5667777778888888889999998887433211111 111222222222223 3456777889999999989888888
Q ss_pred HH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC-CHHHHHHHHHc
Q 037142 225 VI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG-THEQIKYLERE 271 (383)
Q Consensus 225 ~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~ 271 (383)
++ +.+....++.++-+++.++...|...|....... ..+.++.+++.
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~ 567 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQS 567 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 88 6888999999999999999999999999887654 33555655554
No 331
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=75.18 E-value=17 Score=24.84 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=46.8
Q ss_pred HhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CCCChhHHHHHHHHHH
Q 037142 14 VDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NHENLSMKRIATWTLS 85 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~~~~~~~~~a~~~L~ 85 (383)
.+...+.+|..++.+ .+.++|+..+.++..+.... ..-+..| -+.++..+. .+.++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~----~~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSR----GENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh----HHHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 445667888888765 78899999999999998532 2333455 667777663 3456777777776654
No 332
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.14 E-value=51 Score=29.70 Aligned_cols=132 Identities=12% Similarity=0.119 Sum_probs=86.3
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccc
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 181 (383)
-+.-++..+.+.+..++..++..+..+... .+.....- -..+++.+..+..+.+..++......+-.+..........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 455677777888999999999999888865 22222222 2236788888888999999999888888866543322211
Q ss_pred eecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHh
Q 037142 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll 238 (383)
..-.-+++.+...+.+. .+.++..++..+.-+.... |........ +++...+++
T Consensus 137 p~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred chHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 22223455666666777 8999999999998887643 443333332 444444444
No 333
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.99 E-value=14 Score=33.04 Aligned_cols=133 Identities=12% Similarity=0.130 Sum_probs=88.7
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
-+..++..+++.+.+++..++..|..+..+.+...+ .--..+++.+..++.+. +..+|......+-.+....-.....
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 467788889999999999999999888765443222 11124567777777777 8899999988888765432111122
Q ss_pred HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 037142 225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL 281 (383)
Q Consensus 225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll 281 (383)
..-.=+++++...|.+-.+.++..+...+..++....+........ +++.+.+.+
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 2222345666667777899999999999999987765555544333 344444443
No 334
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=74.95 E-value=65 Score=29.11 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=61.8
Q ss_pred hhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccc
Q 037142 102 CLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 102 ~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
-+.+++.-+. .....+|..++--|+.-+.. ++....+..+|..+.++..+.+ ++..+...+..++..+...+....
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 3444555444 34467888887777777765 7788889999999999999965 444355555555555554444444
Q ss_pred cceecCCChHHHHHhhc
Q 037142 180 LYIINCGALPYLLGLLI 196 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~ 196 (383)
..+.+.+....+..++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 44455666777777776
No 335
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=74.73 E-value=75 Score=29.79 Aligned_cols=212 Identities=13% Similarity=0.078 Sum_probs=112.0
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC----CC-------CChhhhhchhHHHHHhh----ccCC----HHHHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGK----PR-------PIFDQVRPCLPTLAQLV----HSND----EHVMS 119 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~----~~-------~~~~~~~~~i~~l~~ll----~~~~----~~~~~ 119 (383)
.+|..+.+++..+....++.+++|.|+.+--.. .. ..+.-...++...+.++ +.+. +...+
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 467788888866778899999999999883221 11 11112234444444444 3222 56666
Q ss_pred HHHHHHHHhccCC--CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc
Q 037142 120 NACWGLSLLCDGG--KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID 197 (383)
Q Consensus 120 ~~~~~l~~l~~~~--~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~ 197 (383)
.++..+......+ ++-+-.. ++..++++ +-..+++..++.....=+.... ....++..-+.|.++.-++.
T Consensus 177 vvl~~ia~vgeS~qyPPVNWaa-----lLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs~ 248 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPPVNWAA-----LLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLSV 248 (589)
T ss_pred HHHHHhhhcCCCCCCCCccHHH-----HhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhhH
Confidence 6666666654432 2222222 23444444 2346677777765543333332 33445666666666655533
Q ss_pred ccchhHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 037142 198 NHKTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP 276 (383)
Q Consensus 198 ~~~~~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~ 276 (383)
..+..-+..+.-.+.. +++..+.+++.-++..+-......++++...+..-+..-....++.+.-.-.=......
T Consensus 249 ----~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttek 324 (589)
T PF11229_consen 249 ----NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEK 324 (589)
T ss_pred ----HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 4555555555554443 34444555443222222222223567888888888877665544433222111235666
Q ss_pred HHhhcC
Q 037142 277 LCDLLL 282 (383)
Q Consensus 277 L~~ll~ 282 (383)
+++++-
T Consensus 325 IF~lLP 330 (589)
T PF11229_consen 325 IFDLLP 330 (589)
T ss_pred HHHhCc
Confidence 777663
No 336
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=74.66 E-value=93 Score=30.82 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=81.8
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
+++.|..+..++=..++..++.++..+..+.++.-+ .++..++.-|.++ +..+...|-..|.+|.+..|...-.
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDp-qnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDP-QNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCc-chhhhhhHHHHHHHHHhhCCcceee
Confidence 567777777777789999999999999888775443 5677788888888 8888888888888887766554433
Q ss_pred HHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCC-CHHHHHHHHH
Q 037142 225 VIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGG-THEQIKYLER 270 (383)
Q Consensus 225 ~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~ 270 (383)
++..+..++..+ +...+..|+.+|.++.... ..+.+..+++
T Consensus 379 -----vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 379 -----VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred -----hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 344666776654 5566677888887776543 3344555544
No 337
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.58 E-value=76 Score=30.77 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=72.7
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHh---cCCCChhHHHHHHHHHHhhcCCC-C
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL---NNHENLSMKRIATWTLSNLCGGK-P 92 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L---~~~~~~~~~~~a~~~L~~l~~~~-~ 92 (383)
..+..++..+. .++..+..++++|.|+-.+ +..++.+... ...+...+ ...++..++........|++.-- .
T Consensus 589 ~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~ 664 (745)
T KOG0301|consen 589 NLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQ 664 (745)
T ss_pred HHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Confidence 34555555555 6678899999999999987 5667666543 22222222 12334455554444444544321 1
Q ss_pred CCChhhhhchhHHHHHhhc-----cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142 93 RPIFDQVRPCLPTLAQLVH-----SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH 155 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~ 155 (383)
... ..+..+.+...+. .+|.+.....+.+|.+|+.. +.....+...--+..++..+++
T Consensus 665 ~~~---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~--~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 665 DNE---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV--DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccc---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc--cHHHHHHHHhcCHHHHHHHHHH
Confidence 111 1334444444443 23456777888899999977 3444444444345667766655
No 338
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.21 E-value=62 Score=28.60 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH-hhc---c-----CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCc
Q 037142 75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ-LVH---S-----NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGV 145 (383)
Q Consensus 75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~-ll~---~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 145 (383)
.+++..+..+.......+.. .......+|.++. .+. + .++++..-....+..+-.. -.+....+.+. +
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~-~~~~v~~I~~~-v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL-IQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG-CCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh-hhhhHHHHHHH-H
Confidence 45666677776666654322 2244666777665 332 1 3477777777777777665 45666777765 6
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHhhhhcCCCccccceec---CCChHHHHHhhccccchhHHHHHHHHHHHHhc---
Q 037142 146 CPRLVKLLGH---PSQSVLTQALHTVGNIARGDYSQTLYIIN---CGALPYLLGLLIDNHKTSIKNYACWIISNITA--- 216 (383)
Q Consensus 146 i~~l~~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--- 216 (383)
+...+.++.. +-|+.+..-...|..+........-.+-. ..+++.+...++++ +.++...++.++..+..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 7788888866 45788888888888887654322111111 13466677777888 89999999988877753
Q ss_pred -CCHHHHHHHHhcCChHHHHHHh
Q 037142 217 -GNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 217 -~~~~~~~~~~~~~~l~~L~~ll 238 (383)
.+++....+.+.-.++.+..++
T Consensus 198 ~~~~~~~~~F~~~y~~~il~~if 220 (319)
T PF08767_consen 198 KTNPEFANQFYQQYYLDILQDIF 220 (319)
T ss_dssp H-SHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666544444444433
No 339
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.32 E-value=50 Score=34.01 Aligned_cols=136 Identities=9% Similarity=0.068 Sum_probs=89.1
Q ss_pred CCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHHHHHhcCChH
Q 037142 154 GHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQAVIDAGLIG 232 (383)
Q Consensus 154 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~ 232 (383)
++-+++++..++..|+.-+...| ..+++...++.+=-.|++. +..||..++.+|..|..... ...-..+-..+=.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 55688999999999988887666 4577778888888888888 99999999999999976531 1122222344556
Q ss_pred HHHHHh-hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142 233 PLVNLL-QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 233 ~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~ 300 (383)
.++.+. .+-+..|+..+...+.-....+ ++...-+..+.+++-+.+++++..|...+..-+
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 677777 3345556655444433332221 122234556667777778888877766655443
No 340
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=72.06 E-value=25 Score=25.26 Aligned_cols=80 Identities=16% Similarity=0.078 Sum_probs=52.8
Q ss_pred CChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHHHHHHHHHHHhcCCC
Q 037142 186 GALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 186 ~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~ 260 (383)
|++..+...+.+.+ +...++.++++++.+........ ..+.|.++.+|++ ..++++..|+.+-..+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 44455555555442 33558889999988876332222 3357788888876 47789999988888877766
Q ss_pred CHHHHHHHHH
Q 037142 261 THEQIKYLER 270 (383)
Q Consensus 261 ~~~~~~~l~~ 270 (383)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 341
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.05 E-value=62 Score=27.64 Aligned_cols=165 Identities=16% Similarity=0.081 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHhcCC-------hHHHHHHHhcCChHHHHHHhcCCCC----hhHHHHHHHHHHhhcCCCCCCChhhh
Q 037142 31 DDIRMQSVWALGNIAAES-------PRFRDLVLGEAALIPLLTQLNNHEN----LSMKRIATWTLSNLCGGKPRPIFDQV 99 (383)
Q Consensus 31 ~~i~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~~L~~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~ 99 (383)
+...+.++..|..++... ++.|-.+.-.+.+|.++..+ ++++ ......++..|+.+|......
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~~a~~~~~~----- 149 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQVAEAQGLP----- 149 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHHHHHhCCCc-----
Confidence 345566667777666421 11222222234466666666 3433 234456668888888543211
Q ss_pred hchhHHHHHhhc---cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 100 RPCLPTLAQLVH---SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 100 ~~~i~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
++-..+..+.+ .+..+....++..|+.-.. ++. +...+..++.+|..+-+.++...+.+|..+....+
T Consensus 150 -~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~---P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 150 -NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF---PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred -cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC---chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 22222222222 3335566666666654331 111 11256778999999889999999999999987766
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
-... ...+++.++..+++++ .-..|+.++-++..
T Consensus 221 ~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 221 MRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred CCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 4432 5557888888888766 45667777766654
No 342
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=71.83 E-value=87 Score=29.21 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHhcCChH-HHHHHHhcCChH-HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh-hhchhHHHH
Q 037142 31 DDIRMQSVWALGNIAAESPR-FRDLVLGEAALI-PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ-VRPCLPTLA 107 (383)
Q Consensus 31 ~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~-~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~l~ 107 (383)
..-|..|+.+|+.++..-++ .... ... .|...| +++...-+..+.-++...+.......... ...+.+.|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 35577889999998854211 1111 123 578888 56555556666677777776552221111 345666777
Q ss_pred HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCc
Q 037142 108 QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGV 145 (383)
Q Consensus 108 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 145 (383)
..|.++.+..-......+..+-.. .......+.+.|.
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~e-c~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTE-CQQLLATFRDVGK 211 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 777755433333344444444433 3445555555555
No 343
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.75 E-value=78 Score=31.34 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=100.6
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
..+.-|+.++.+++..+.+.+-..+..+... ..+ .. ++..|+++- +..+.. ++.+|..+ ..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~-~~~--~~-----l~~~l~~y~~~t~s~~----~~~il~~~--~~P--- 66 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNS-DRE--PW-----LVNGLVDYYLSTNSQR----ALEILVGV--QEP--- 66 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhc-cch--HH-----HHHHHHHHHhhcCcHH----HHHHHHhc--CCc---
Confidence 3466788889999988888888888777654 221 12 244555543 334322 23333322 122
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcC
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATF 258 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~ 258 (383)
-+..++..|-..+... ..|..++..|+.++...+...-.+.++.+++.|+.+|.. .+..+...|+.+|.-+.=
T Consensus 67 ---~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 67 ---HDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ---cHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 1124566777777654 788999999999999888888899999999999999975 577777778887777754
Q ss_pred CCCHHHHHHHHHcCChHHHHhhc
Q 037142 259 GGTHEQIKYLEREGCIKPLCDLL 281 (383)
Q Consensus 259 ~~~~~~~~~l~~~~~i~~L~~ll 281 (383)
........++.+ ++..+..++
T Consensus 141 ~ip~~l~~~L~~--Lf~If~Rl~ 161 (668)
T PF04388_consen 141 HIPSSLGPHLPD--LFNIFGRLL 161 (668)
T ss_pred cccchhhHHHHH--HHHHHHHHH
Confidence 433233333332 444444444
No 344
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=70.00 E-value=86 Score=28.44 Aligned_cols=219 Identities=15% Similarity=0.145 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHHHhhcCCCC---CCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHH
Q 037142 73 NLSMKRIATWTLSNLCGGKP---RPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCP 147 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~ 147 (383)
+..+..+|+.+++.+..+.. ........-++...+..+.++ +..+....+|+|..---. .. +.....+.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~--~~----~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS--PK----IMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC--Cc----ccchhhHH
Confidence 77899999999999987752 112222233566666666543 456777777777653332 11 11112233
Q ss_pred HHHHhc---C--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh--cCCH-
Q 037142 148 RLVKLL---G--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT--AGNR- 219 (383)
Q Consensus 148 ~l~~~L---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~--~~~~- 219 (383)
.++..+ . -+...+....+.++.++....+.....-.+ -.++.++..+-+. ...++..|...+..+. .+..
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhH
Confidence 333332 2 256778889999999998776643211111 2567777777666 6677776665554443 1221
Q ss_pred HHH---HHHHhcCC---------hHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCChHHHHhhcCCCCH
Q 037142 220 EQI---QAVIDAGL---------IGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQIKYLEREGCIKPLCDLLLCPDP 286 (383)
Q Consensus 220 ~~~---~~~~~~~~---------l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~ 286 (383)
... ...++... .+.|..++.+.+...-..-.|...-+..... .+.-..+ +..+...-..+.++|+
T Consensus 211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCH
Confidence 111 22222222 3336666665222222222333332222211 1111111 2355666668889999
Q ss_pred HHHHHHHHHHHHHHH
Q 037142 287 QIVTVCLKALENILK 301 (383)
Q Consensus 287 ~v~~~al~~l~~l~~ 301 (383)
.++..|..+=..++-
T Consensus 289 ~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 289 QVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998877666655
No 345
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.88 E-value=8.2 Score=27.55 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ 163 (383)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~ 163 (383)
...+..+..++.. ++.+..+++.|+++.|+.+|.|+|..+...
T Consensus 64 d~~Ik~l~~La~~--P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLATA--PELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccCC--hhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 4456677788876 678889999999999999999998776543
No 346
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=21 Score=33.22 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=57.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-C-CCHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-H-DNYEIHEKSAKI 350 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~-~~~~v~~~a~~~ 350 (383)
++..|.+-+.++++.++..|+..|..++..|+.. |...+.+.+++..++.+.. . .+..|+++++.+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 5666777777888899999999999898877653 5666778888888777644 4 577899999999
Q ss_pred HHHhcCCC
Q 037142 351 LETYWCGR 358 (383)
Q Consensus 351 l~~~~~~~ 358 (383)
|+.+...-
T Consensus 107 I~~W~~af 114 (470)
T KOG1087|consen 107 IDTWQQAF 114 (470)
T ss_pred HHHHHHHc
Confidence 98775543
No 347
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=68.46 E-value=68 Score=26.68 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=79.8
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC---------C---------HHHHHHHHHHHHHhccCCCc
Q 037142 73 NLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN---------D---------EHVMSNACWGLSLLCDGGKN 134 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~---------~---------~~~~~~~~~~l~~l~~~~~~ 134 (383)
+......++..+..|...++........++++.+...+..- + ..+...-...|+.++.. .
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~--~ 154 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST--P 154 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC--h
Confidence 35566677888888887764444444566666666665522 1 12333344567777776 6
Q ss_pred hHHHHHHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHH-HHHhhccccchhHHHHHHHHHH
Q 037142 135 DEIQAVIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPY-LLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 135 ~~~~~~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~-l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
...+.+.+.+++..+.++...++. .+... ++.++=...+ |.... +.+.|.++ +..+|..|...|+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~---------~~~R~iLsKaLt~~-s~~iRl~aT~~L~ 221 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVD---------GHPRIILSKALTSG-SESIRLYATKHLR 221 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCc---------cHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 677778888999999998887533 33322 3444422222 33333 44567777 8899999999888
Q ss_pred HHh
Q 037142 213 NIT 215 (383)
Q Consensus 213 nl~ 215 (383)
.+.
T Consensus 222 ~ll 224 (226)
T PF14666_consen 222 VLL 224 (226)
T ss_pred HHh
Confidence 764
No 348
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=67.94 E-value=34 Score=24.52 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=53.8
Q ss_pred CChHHHHHhhcc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHHHHHHHHHHHhcCCC
Q 037142 186 GALPYLLGLLID---NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 186 ~~i~~l~~ll~~---~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~ 260 (383)
|++..+...+.+ ..+...+..+++.++.+........ ..+.|.++.+|++ ..++++..|+.+-..+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-----~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-----SSARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 344444455544 2266778899999999886433333 3357778888876 45689999988888887766
Q ss_pred CHHHHHHHHH
Q 037142 261 THEQIKYLER 270 (383)
Q Consensus 261 ~~~~~~~l~~ 270 (383)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 349
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.44 E-value=1.1e+02 Score=28.71 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=58.0
Q ss_pred HHHHhhCC----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHH----HHHHHHhhcCCCC
Q 037142 21 IFVKLLAS----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRI----ATWTLSNLCGGKP 92 (383)
Q Consensus 21 ~L~~lL~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~----a~~~L~~l~~~~~ 92 (383)
-|..+|.. -++++++..+.+|..+--.+ .+.-...+..++.++ ...+...+.. .+..+.|+-...
T Consensus 20 el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~-~~~dk~lRkllythiv~~Ikn~n~~~- 92 (616)
T KOG2229|consen 20 ELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLL-RCGDKNLRKLLYTHIVTTIKNINKKH- 92 (616)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHhhc-
Confidence 34455543 56899999999998876332 222233456666666 4556555553 444555443322
Q ss_pred CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc
Q 037142 93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD 130 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~ 130 (383)
.....-...-..+..++..+++.--..++..+..|-.
T Consensus 93 -kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 93 -KNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred -ccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 1222234455567778888877666666666655553
No 350
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=67.03 E-value=1e+02 Score=28.11 Aligned_cols=137 Identities=13% Similarity=0.007 Sum_probs=73.9
Q ss_pred HHHHHHhcCCCC-hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc---------cccchhHHHHHHHHHHHHh
Q 037142 146 CPRLVKLLGHPS-QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI---------DNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 146 i~~l~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~---------~~~~~~~~~~a~~~l~nl~ 215 (383)
...++..|..+. ..-+..++.+++.|+.... ..+.+.....+..+..+.. ...+..+..+++.+|.|++
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 345555555544 3444566677777765433 2222333233344433321 1114578899999999999
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC
Q 037142 216 AGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC 283 (383)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 283 (383)
.+++..++...+......+.+.+... ...++..-...|.-+..-......+.+.+.++++.+-+.+.+
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 99988888877777666666655321 111111112222222222123344455567888888887763
No 351
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.58 E-value=15 Score=36.92 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=65.1
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHH----hccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSL----LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
..++.....++.+++..+|..++.++.. |+.. .+.....+- ..+|.+++.+..+|+-+...|+.++.+++...
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~-~n~LlPlvh--q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY-HNLLLPLVH--QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc-chhHhHHHH--hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 5566667778889999999998888763 4444 444444443 37899999999999999999999999999777
Q ss_pred CccccceecCCChHHHHHhh
Q 037142 176 YSQTLYIINCGALPYLLGLL 195 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll 195 (383)
.+....=+-..++|.+-.++
T Consensus 879 gDFv~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLC 898 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 65433222224444444333
No 352
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=65.67 E-value=22 Score=21.47 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=29.8
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 037142 320 AQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETY 354 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~ 354 (383)
.+.+.+.+.-..+..+..+ +++++++.|..++...
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5668899998999999988 9999999999998764
No 353
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=65.63 E-value=41 Score=25.78 Aligned_cols=124 Identities=22% Similarity=0.188 Sum_probs=81.1
Q ss_pred ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC---ChhhhhchhHHHHHhhc-cCCHHHHHHHHH
Q 037142 48 SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP---IFDQVRPCLPTLAQLVH-SNDEHVMSNACW 123 (383)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~ 123 (383)
+++.-+.+++.+++..+++.+++.....++.+.+..++-+...-..+ -.....+.+..++..-- -.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45678889999999999999976567788888888888777654222 23333556665555433 457888888888
Q ss_pred HHHHhccCCCchHHHHHHHh--CcHHHH---HHhcCCCChhhHHHHHHHHhhh
Q 037142 124 GLSLLCDGGKNDEIQAVIEA--GVCPRL---VKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~~~--~~i~~l---~~~L~~~~~~v~~~a~~~L~~l 171 (383)
.|..++..-+.+....+... +-+|.. +++..++|.-++.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888865333444443321 233443 5566777777776665555444
No 354
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.37 E-value=1.4e+02 Score=29.17 Aligned_cols=207 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceec-----CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142 146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIIN-----CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE 220 (383)
Q Consensus 146 i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-----~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~ 220 (383)
++.+++.++++|+++..+++..++.....+....-...+ ..-...|..+-.+-.+++.++..+.+|+.++...++
T Consensus 50 LellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt~se 129 (878)
T KOG2005|consen 50 LELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMTMSE 129 (878)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHheeecc
Q ss_pred HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH-------------------------HHhcCCCCHHHHHHHHHcCChH
Q 037142 221 QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI-------------------------SNATFGGTHEQIKYLEREGCIK 275 (383)
Q Consensus 221 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l-------------------------~~l~~~~~~~~~~~l~~~~~i~ 275 (383)
.... +...+.....++-.=++.-||.-|...- .++..+...+.+..+.+-+.+.
T Consensus 130 ~~~~-l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Eve~id 208 (878)
T KOG2005|consen 130 RGEH-LAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEVEGID 208 (878)
T ss_pred cchh-eeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhHh
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcC------CCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHH
Q 037142 276 PLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDT------DIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSA 348 (383)
Q Consensus 276 ~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~ 348 (383)
.+.+..+..+..-...-+....+++-..+....... +....+...+.....+-++.+.+...+ .++..+++..
T Consensus 209 ~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ 288 (878)
T KOG2005|consen 209 LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMA 288 (878)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHH
Q ss_pred HHHHH
Q 037142 349 KILET 353 (383)
Q Consensus 349 ~~l~~ 353 (383)
.+|.+
T Consensus 289 ymLaR 293 (878)
T KOG2005|consen 289 YMLAR 293 (878)
T ss_pred HHHHh
No 355
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=63.85 E-value=1.1e+02 Score=27.58 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 73 NLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
...-++-|...+.+...+-|. ....++..=+.+..+.|..+|.+|+.-|-.+|.+
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred chHHHHHHHHHHHHHHhhCch----hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 345567777888887776543 2344667777788888899999999988888865
No 356
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=63.59 E-value=56 Score=26.63 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=50.8
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
.+.+.+.+ .+++.-.++.++-++...... ......+..+...+.+++.-++..+.|+|..++.. +++....+
T Consensus 122 ~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~ 193 (213)
T PF08713_consen 122 LELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEF 193 (213)
T ss_dssp HHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHH
T ss_pred HHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 44555566 577777788776666555443 23345666777777888999999999999999988 66555554
Q ss_pred HHh
Q 037142 141 IEA 143 (383)
Q Consensus 141 ~~~ 143 (383)
+..
T Consensus 194 l~~ 196 (213)
T PF08713_consen 194 LQK 196 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 357
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.87 E-value=31 Score=34.56 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh--HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL--IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTL 106 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l 106 (383)
-|++++..|+.++.|+....|+++...+..-+- ..=-..+...+.....++.+.-.++-.+ ..++|.+|
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr---------~ndGIkiL 744 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVR---------GNDGIKIL 744 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHh---------cCccHHHH
Confidence 479999999999999998887777655321100 0001122222223333333333333332 25689999
Q ss_pred HHhhccCC-----HHHHHHHHHHHHHhccC
Q 037142 107 AQLVHSND-----EHVMSNACWGLSLLCDG 131 (383)
Q Consensus 107 ~~ll~~~~-----~~~~~~~~~~l~~l~~~ 131 (383)
+++++-.. ..+|..||.+|..|++.
T Consensus 745 l~Ll~~k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 745 LKLLQYKNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence 99998433 57999999999999987
No 358
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.12 E-value=12 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHH
Q 037142 248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVT 290 (383)
Q Consensus 248 ~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 290 (383)
+....+..++.. |+....+++.|+++.|+.+|.+++.++..
T Consensus 65 ~~Ik~l~~La~~--P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATA--PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCC--hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345566677765 68899999999999999999998887654
No 359
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=61.10 E-value=38 Score=21.15 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=36.8
Q ss_pred cHHHHHHHHhccHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 037142 317 NQYAQLVEEAKGLEKIENL-QRHDNYEIHEKSAKILETYWCGRVVGP 362 (383)
Q Consensus 317 ~~~~~~l~~~~~~~~L~~l-~~~~~~~v~~~a~~~l~~~~~~~~~~~ 362 (383)
..-++.+++.|+.+.|.++ ...++++|...+..+..-+..++.+..
T Consensus 9 ~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 9 REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 3467789999999999888 445688999999999998887766543
No 360
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=60.54 E-value=1.9e+02 Score=28.95 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH-------Hc--
Q 037142 202 SIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLE-------RE-- 271 (383)
Q Consensus 202 ~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~-------~~-- 271 (383)
.....+++++..+.-+. -....++ ....+-.+...+....+.++..++.+++.+|........+.++ +.
T Consensus 207 k~~~eiIrClka~mNn~-~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNK-FGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhccc-cceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 44566777776665432 2222222 2333556666666677788888888888888664323333222 11
Q ss_pred -CChHHHHhhcCCCC-HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 037142 272 -GCIKPLCDLLLCPD-PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK 349 (383)
Q Consensus 272 -~~i~~L~~ll~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 349 (383)
.-+.++++.+...+ ...+..+...|.-+.......+ ..-.++.-+-..|..+.|.++....|+. .+...+
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dld-------fRlhlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlk 357 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLD-------FRLHLRSEFMRDGLHKYLPDLTEINNDI-LDVQLK 357 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhh-------HHHHHHHHHHHHhHHHHHHHhhhhccHH-HHHHHH
Confidence 23566778777664 4455545554444443333221 1123444566778888888887764444 344444
Q ss_pred HH
Q 037142 350 IL 351 (383)
Q Consensus 350 ~l 351 (383)
++
T Consensus 358 vf 359 (1102)
T KOG1924|consen 358 VF 359 (1102)
T ss_pred HH
Confidence 33
No 361
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=60.24 E-value=38 Score=27.68 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=49.9
Q ss_pred HHHHHHHhCCChHHHHHhhCC---CC---------------hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc
Q 037142 8 EDKKAVVDHGAVPIFVKLLAS---PS---------------DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN 69 (383)
Q Consensus 8 ~~~~~~~~~g~i~~L~~lL~~---~~---------------~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~ 69 (383)
...+.+.+.|++..++.+|.. .. .++...+...|..++.+++++...+.+. ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 566778889999999999874 21 3677888899999999888888877654 333333331
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS 112 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~ 112 (383)
..+ ...--.+..++..+..+++..........+..++.++..
T Consensus 112 ~~~-~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQ-IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELLRK 153 (207)
T ss_dssp CCC-H-TTHHHHHHHHHHHTT----------------------
T ss_pred Hhh-ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHH
Confidence 211 111224566677777776444333344446666666664
No 362
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.98 E-value=92 Score=32.30 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=79.8
Q ss_pred hccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP 189 (383)
Q Consensus 110 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 189 (383)
++.++...+..++..+..+-.. .++++...-+.-.+|.++.-+......++...+..|-.-+..-.. +-....+
T Consensus 476 LkaenkdlqaeVlnrmfkIfts-hpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvnc----vPeqELl- 549 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTS-HPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNC----VPEQELL- 549 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhcc-ChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhcc----CcHHHHH-
Confidence 3466677777788888777766 567777776666788888888876677888888777655432111 1111122
Q ss_pred HHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142 190 YLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 190 ~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
.|.-+|+.+-...++...+...-.+...+...+..+.+-|+++.|...++.
T Consensus 550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkq 600 (2799)
T KOG1788|consen 550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQ 600 (2799)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233455555345555555555566666666666667788888888877753
No 363
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=59.73 E-value=34 Score=26.81 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH-hcCCCC--hhhHHHHHHHHhhhhcCCC
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK-LLGHPS--QSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~-~L~~~~--~~v~~~a~~~L~~l~~~~~ 176 (383)
..+.+.+.+.+.++++.+...++..+..+... -....+.-.+. +++.++. ++.+++ ..-+..++.++..++..+.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~-~~~~Lk~ele~-~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR-FRSHLKLELEV-FLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 56777788888777799999999999988865 23333322222 4555555 666544 4567789999999986544
No 364
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=58.40 E-value=23 Score=25.84 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=31.5
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVL 56 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 56 (383)
+++.|++-|.++++++...|+.+|...+.+. .+.+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999999765 4544444
No 365
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=57.76 E-value=23 Score=26.22 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=56.5
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCccc
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL---LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVN 317 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 317 (383)
.+.......+.-|+..+.+. ..... ++..|..-| +.+++.+...|+..|..++..+...
T Consensus 15 d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------- 76 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------- 76 (125)
T ss_dssp SSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-----------
T ss_pred CCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-----------
Confidence 34445555566777777652 44444 355666666 5567788889999999999887653
Q ss_pred HHHHHHHH-hccHHHHHHHhc--C----CCHHHHHHHHHHHHHhcCC
Q 037142 318 QYAQLVEE-AKGLEKIENLQR--H----DNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 318 ~~~~~l~~-~~~~~~L~~l~~--~----~~~~v~~~a~~~l~~~~~~ 357 (383)
+..-+.. ...+..+.+... . ....|+++|..++.-+.++
T Consensus 77 -~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 -FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp -HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred -HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 3333322 222333333322 1 1124999999998866554
No 366
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.37 E-value=12 Score=33.01 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=50.0
Q ss_pred HHHHHhhhhcCCCccccceecCCChHHHHHh--hccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 037142 164 ALHTVGNIARGDYSQTLYIINCGALPYLLGL--LIDNHKTSIKNYACWIISNITAGNREQIQAVI 226 (383)
Q Consensus 164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~l--l~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~ 226 (383)
..+.++++|+..++....+.+.|+++.+++- +.+. +|-+++.++.++.++...+.++.+.+-
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 6778999999888888888888888887764 3445 899999999999999988866665543
No 367
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=56.32 E-value=61 Score=23.19 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=52.4
Q ss_pred CChHHHHHHhcC---CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc--CCHHHHHHHHHHHHHhccCCC
Q 037142 59 AALIPLLTQLNN---HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS--NDEHVMSNACWGLSLLCDGGK 133 (383)
Q Consensus 59 g~i~~L~~~L~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~ 133 (383)
|++..+-+.+.+ ..+...+..++.++..+.+-.. .....+.|.+..+|++ ..++++..++.+-..+....+
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~----~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG----SHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 445555555543 3566778888888888886321 2345566666666663 345788888887777776534
Q ss_pred chHHHHHHHhCcHHHHHH
Q 037142 134 NDEIQAVIEAGVCPRLVK 151 (383)
Q Consensus 134 ~~~~~~~~~~~~i~~l~~ 151 (383)
.+....+.+. .+-.+++
T Consensus 87 ~~~l~~ll~~-~~~~l~~ 103 (107)
T PF08064_consen 87 EEDLGPLLDQ-IFAILLP 103 (107)
T ss_pred HHHHHHHHHH-HHHHHHH
Confidence 4444444443 3333433
No 368
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=56.10 E-value=1.8e+02 Score=27.25 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHh
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~l 194 (383)
...|..++.+|+.++..-+.+....+.+ +.|..+|.+....-+..+.-++...+...........-..+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 4567778888888886522333333221 268888888777667777777777775444222111012345566666
Q ss_pred hccc
Q 037142 195 LIDN 198 (383)
Q Consensus 195 l~~~ 198 (383)
|..+
T Consensus 177 L~~~ 180 (441)
T PF12054_consen 177 LENP 180 (441)
T ss_pred HcCC
Confidence 6643
No 369
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=56.04 E-value=42 Score=26.40 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHH
Q 037142 113 NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLL 192 (383)
Q Consensus 113 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~ 192 (383)
+..++|+.|..+++.+... ....... . .++..+..-|.+ +.+++..+...+..++...+.....-++ .+++.+-
T Consensus 39 DGLelRK~ayE~lytlLd~-~~~~~~~-~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~ 112 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDT-CLSRIDI-S--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLR 112 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHS-TCSSS-H-H--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHhCCH-H--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHH
Confidence 3479999999999999765 3333331 1 256778888888 8899999999999999777754433333 5667776
Q ss_pred Hhhcccc-----------chhHHHHHHHHHHHH
Q 037142 193 GLLIDNH-----------KTSIKNYACWIISNI 214 (383)
Q Consensus 193 ~ll~~~~-----------~~~~~~~a~~~l~nl 214 (383)
..++... ..+..+.+++++..+
T Consensus 113 ~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 113 KTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 6664211 234455566666655
No 370
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=55.82 E-value=30 Score=26.46 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
+..|+..|+.+...- -+.+|+++|.+++..+...|..+|.+-+-.
T Consensus 80 ~~~Av~LLGtM~GGY------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY------------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHHHTTS-SST------------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHhhccCCC------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 445666666655432 278899999999999999999999887753
No 371
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=53.63 E-value=51 Score=34.55 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=67.6
Q ss_pred ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHH-HHHhcCCCCHHHH
Q 037142 187 ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA-ISNATFGGTHEQI 265 (383)
Q Consensus 187 ~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~-l~~l~~~~~~~~~ 265 (383)
.++.+..+..+. +..+|..+.++++-+........... ++..++.++...+.-+++.++.. +..+.........
T Consensus 817 ~l~~l~~~~~s~-~~a~r~~~ar~i~~~~k~~~~e~m~~----v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~ 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSI-HIAVRYAAARCIGTMFKSATRETMAT----VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLV 891 (1549)
T ss_pred hhhHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccc
Confidence 467788888888 99999999999998875332222222 34455555655444444444333 2222221110111
Q ss_pred HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 266 KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 266 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
.+ ..=++++|...+.+....++..+..++..++...+
T Consensus 892 ~~--~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 892 PY--NPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cc--ceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 11 11267888888888888899999999988886543
No 372
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=53.25 E-value=39 Score=25.47 Aligned_cols=125 Identities=19% Similarity=0.138 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC--CC-------h-----
Q 037142 32 DIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR--PI-------F----- 96 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~--~~-------~----- 96 (383)
-++.+.+.++..++..+ |.. -.+.++.+++.++ + ++.-....+.+|..+.++-.. .. .
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~-~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQ-S-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHH-T-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhc-c-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 45566666666666321 110 1234566666663 2 344444555555555433211 00 0
Q ss_pred --hhhhchhHHHHHhhccCC----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 97 --DQVRPCLPTLAQLVHSND----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 97 --~~~~~~i~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
.....+++.+.+.+.... .++...++.++...... -....+....+++.++++|.++ +.+..|+.+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 011345555555555332 78899999999998865 3455666677999999999444 4577777765
No 373
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=52.74 E-value=1.8e+02 Score=26.40 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc
Q 037142 32 DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH 111 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~ 111 (383)
.-...|...+.+.-..-|+..... +..-+.+. .+.+..++++|+.-|=.+|.+. ....+.+.|.++|+
T Consensus 39 k~k~lasq~ip~~fk~fp~la~~a-----~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLADEA-----IDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhhhHH-----HHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHHHH
Confidence 334445555555554444433332 33445555 6778999999999999999874 22334444444443
Q ss_pred ------------cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142 112 ------------SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 112 ------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~ 173 (383)
..|.++++.++..|..=......+....-++..++..+...|.+-+.+-....+..|+++..
T Consensus 107 k~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 107 KASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 34678888888777643322133333333444466777777777555555566666666653
No 374
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=52.44 E-value=86 Score=22.60 Aligned_cols=69 Identities=6% Similarity=-0.037 Sum_probs=50.6
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh----c--CCCCHHHHHHHHHHHHH
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDL----L--LCPDPQIVTVCLKALEN 298 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~l----l--~~~~~~v~~~al~~l~~ 298 (383)
++..|..-+.+.++.++..|..+|-.++.++++.....+.+..++..++.+ . ...+..|+..+...+..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 344566666778999999999999999999988888887777666666543 1 12356788877776654
No 375
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.03 E-value=12 Score=18.89 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc
Q 037142 76 MKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH 111 (383)
Q Consensus 76 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~ 111 (383)
++..++++|+++.. ...++.|.+.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46788888888875 336677776654
No 376
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=50.86 E-value=24 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=20.3
Q ss_pred HhccHHHHHHHhcCCCHHHHHHHHHHH
Q 037142 325 EAKGLEKIENLQRHDNYEIHEKSAKIL 351 (383)
Q Consensus 325 ~~~~~~~L~~l~~~~~~~v~~~a~~~l 351 (383)
.....+.+..-+.++++.|++.|.+++
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 334556677778889999999988764
No 377
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.72 E-value=46 Score=31.04 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSN 86 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~ 86 (383)
++..+.+-+.+.++.++..|+.+|--+...+. .+...+.+.+++..++...++. .+..++..++..|-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 56777788888888999999998877775443 4555788889999999999777 688889888877743
No 378
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.56 E-value=80 Score=29.57 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=60.3
Q ss_pred ChHHHHHhhccc---cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHH
Q 037142 187 ALPYLLGLLIDN---HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHE 263 (383)
Q Consensus 187 ~i~~l~~ll~~~---~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 263 (383)
+-..|..+|... -++.++...+.+|--|--.+ .+.-..++..+.+++..++...|+-+..-|.....+.+..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~ 91 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK 91 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh
Confidence 344556666543 15778888777776663222 2222345667888888888777776544443333221111
Q ss_pred HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 264 QIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 264 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
...-=...-+-..++.+|+.+++.--..|+..++.+....
T Consensus 92 ~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~ 131 (616)
T KOG2229|consen 92 HKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRN 131 (616)
T ss_pred cccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc
Confidence 1111011123456777888887765555555555555443
No 379
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.16 E-value=67 Score=32.59 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=67.4
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceec--CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIIN--CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~ 222 (383)
++..-.++|.+++-.++..++.++..-..--....+.++. ...=+.++..+... ++-+...|+.++.+++..+++..
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhhHH
Confidence 6778888999999999999998886543111111111211 12345677778888 99999999999999998877777
Q ss_pred HHHHhcCChHHHHHHhhc
Q 037142 223 QAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 223 ~~~~~~~~l~~L~~ll~~ 240 (383)
..=+-..++|.+-.++.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666788888776653
No 380
>PLN03205 ATR interacting protein; Provisional
Probab=50.01 E-value=2e+02 Score=26.16 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=96.9
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcC---CCccccceecCCChHH---HHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARG---DYSQTLYIINCGALPY---LLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~---l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
++++|+.+..-++.-+...+++.|..+..+ +....+.-.+.+.+.. +.+.......+.++.+|+.++.-+....
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 567788888888888889999888877643 3333333444444433 3333222327788888888777666533
Q ss_pred H--HHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHH------------------------c
Q 037142 219 R--EQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLER------------------------E 271 (383)
Q Consensus 219 ~--~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~------------------------~ 271 (383)
+ ..++.+-...+++.+.++++. ....|+++|...+.-+... +.....+.. .
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC--pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS 481 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC--PKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG 481 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC--cHHHHHHhcCCccccccccccccccccccHHHHH
Confidence 2 334444466778889999976 4678999987766544322 222222220 0
Q ss_pred CChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhch
Q 037142 272 GCIKPLCDLLLC-----PDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 272 ~~i~~L~~ll~~-----~~~~v~~~al~~l~~l~~~~~ 304 (383)
.++.-|.+++.+ .+-+++..++-.|..+...+.
T Consensus 482 sIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 482 KIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 134445555543 245778888888887776554
No 381
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=49.70 E-value=29 Score=17.76 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc
Q 037142 75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS 112 (383)
Q Consensus 75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~ 112 (383)
.++..++++|+++... ..++.|.+.+++
T Consensus 2 ~vR~~aa~aLg~~~~~----------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE----------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH----------hHHHHHHHHhcC
Confidence 4688899999988443 256666666653
No 382
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=48.39 E-value=2.2e+02 Score=26.07 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=32.0
Q ss_pred ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142 48 SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG 90 (383)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (383)
++...+..++..++-.|+.++ +++|+.-+...=.+|.++...
T Consensus 166 d~~vaK~yid~~FvlkLLdLF-dSEDpRERe~LKT~LhrIygK 207 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLF-DSEDPREREFLKTILHRIYGK 207 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH
Confidence 456667777788888899998 788888888777777777654
No 383
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.56 E-value=1.3e+02 Score=23.08 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
....|...|+.+.-+.. +..|+.+|.++ ++.+...|..+|.+...-.
T Consensus 79 s~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGYN-----------VQPLIDLLKSD-DEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp -HHHHHHHHTTS-SSTT-----------HHHHHHGG--G--TTTHHHHHHHHHT--TTC
T ss_pred CHHHHHHHHhhccCCCc-----------HHHHHHHHcCC-cHHHHHHHHHHHHhhHHHH
Confidence 35667777776653322 78899999888 8899999999998876433
No 384
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=45.86 E-value=2.9e+02 Score=26.79 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc--hHHHHHHHhCcHHHHH
Q 037142 73 NLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN--DEIQAVIEAGVCPRLV 150 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~i~~l~ 150 (383)
+..++..++..|+--+...| .......++.+.--.|.+.+..++..+...+..++.. .+ +.+..+.+. +-..++
T Consensus 288 ~d~IRv~c~~~L~dwi~lvP--~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~-~p~~d~ir~f~eR-Fk~rIL 363 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLVP--DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSR-IPHTDAIRRFVER-FKDRIL 363 (740)
T ss_pred hHHHHHHHHHHHHHHHhcch--HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhc-CCcchHHHHHHHH-HHHHHH
Confidence 44555555555554444322 2222233555556677788899999999999999987 32 233344443 667788
Q ss_pred HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 151 KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 151 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
+++..+...|+..+++.+..+... ..++...+..+.+++-+. .++-++.....+.++|
T Consensus 364 E~~r~D~d~VRi~sik~l~~lr~l------g~L~~SeIlIvsscmlDi-~pd~r~~~~E~v~~ic 421 (740)
T COG5537 364 EFLRTDSDCVRICSIKSLCYLRIL------GVLSSSEILIVSSCMLDI-IPDSRENIVESVESIC 421 (740)
T ss_pred HHHhhccchhhHHHHHHHHHHHHh------cccchhHHHHHHHHHhcC-CCcchHHHHHHHHHHH
Confidence 888876666888888888777532 133334455666666555 5554444444444444
No 385
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=45.05 E-value=70 Score=25.01 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=53.5
Q ss_pred HHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHH-hcC-ChHHHHH-HhcCCC-ChhHHHHHHHHH
Q 037142 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVL-GEA-ALIPLLT-QLNNHE-NLSMKRIATWTL 84 (383)
Q Consensus 9 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g-~i~~L~~-~L~~~~-~~~~~~~a~~~L 84 (383)
.-..+++..+.+.+.+.+.++++.+...+++++..+.. .++..+. +.+ .++.++. ++..+. ...-+..++.++
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~---~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l 141 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLS---RFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEIL 141 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 34456777888888888888779999999999999884 3443332 112 2333333 553222 345677889999
Q ss_pred HhhcCCC
Q 037142 85 SNLCGGK 91 (383)
Q Consensus 85 ~~l~~~~ 91 (383)
..++.++
T Consensus 142 ~~l~~~p 148 (168)
T PF12783_consen 142 RELCKDP 148 (168)
T ss_pred HHHHhCh
Confidence 9999864
No 386
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=44.29 E-value=1.2e+02 Score=22.04 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=42.5
Q ss_pred ChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc-CCCCHHH-HHHHHHHHHHHHHhc
Q 037142 230 LIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL-LCPDPQI-VTVCLKALENILKVG 303 (383)
Q Consensus 230 ~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v-~~~al~~l~~l~~~~ 303 (383)
++|.+...+. +..++.+..+...++.++...+ .+..++..+++.+ +...... ...++.++..++..-
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4677777787 6688999999999999987642 1112344444432 2222222 467888888888554
No 387
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.26 E-value=1.7e+02 Score=23.71 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=86.7
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHH-HHHHhhhhcCCCccc
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQA-LHTVGNIARGDYSQT 179 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a-~~~L~~l~~~~~~~~ 179 (383)
....+..+..++..+.+..++..+...... .+.. .++.+-.++.. ++..+.... ..+++.+....
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~-~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---- 118 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKK-LTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---- 118 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH----
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhh-hhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh----
Confidence 344566677777778877777777554432 1111 34555666655 566565555 34445543221
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
....+.+...+.++ ++-+++.++.++....... ... .++..+...+.+++..+++...|+|..++..
T Consensus 119 -----~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 -----PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp -----GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 24567778888888 8999999887776655442 111 1233445556778999999999999999988
Q ss_pred CCHHHHHHHHH
Q 037142 260 GTHEQIKYLER 270 (383)
Q Consensus 260 ~~~~~~~~l~~ 270 (383)
+++....++.
T Consensus 186 -~~~~v~~~l~ 195 (213)
T PF08713_consen 186 -DPDEVLEFLQ 195 (213)
T ss_dssp --HHHHHHHHH
T ss_pred -CHHHHHHHHH
Confidence 4555544444
No 388
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.71 E-value=1.5e+02 Score=32.09 Aligned_cols=195 Identities=12% Similarity=0.093 Sum_probs=111.4
Q ss_pred HHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CCCChhHHHHHH---HH
Q 037142 10 KKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NHENLSMKRIAT---WT 83 (383)
Q Consensus 10 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~~~~~~~~~a~---~~ 83 (383)
+..+++.|....+..-+++.|+.++..|.|++...-.+-+..-+...+.-.+..++.+-+ +++++.+..... ..
T Consensus 1432 r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~ 1511 (1758)
T KOG1791|consen 1432 RLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAF 1511 (1758)
T ss_pred chhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHH
Confidence 338889999999999999999999999999988766543331122211112333333332 223333332221 12
Q ss_pred HHhhcCCCCCCCh-----------hhhhchhHHHHHhhccCCHH---HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142 84 LSNLCGGKPRPIF-----------DQVRPCLPTLAQLVHSNDEH---VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL 149 (383)
Q Consensus 84 L~~l~~~~~~~~~-----------~~~~~~i~~l~~ll~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l 149 (383)
..+++-.+..... .+-...+|..-+++.+..++ .|......+...... .+.++.....+....+
T Consensus 1512 ~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks--~~D~ql~~~~~~~~~~ 1589 (1758)
T KOG1791|consen 1512 FSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKS--CPDYQLLQIRNIFETL 1589 (1758)
T ss_pred HHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcC--chhhhHHhhcCcceEe
Confidence 2333333211111 11134666666777655433 444444445444443 4455555566677777
Q ss_pred HHhcCCC--ChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHH
Q 037142 150 VKLLGHP--SQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNY 206 (383)
Q Consensus 150 ~~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~ 206 (383)
+.+..++ +...+.-.+.+|++-+.........+...|....+..++.+.. ++..+..
T Consensus 1590 lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~ 1649 (1758)
T KOG1791|consen 1590 LSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKA 1649 (1758)
T ss_pred ehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhh
Confidence 7777773 4445556777777776555545555667788999999997652 3444444
No 389
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=43.21 E-value=1.5e+02 Score=22.60 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=49.6
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
..+-..+..+|.++++++|..|+.|+...-. +..... -+.|-.++ + +...+....... +..++....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~l~pY------~d~L~~Ll-d--d~~frdeL~~f~--~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD--PYLTPY------KDNLENLL-D--DKTFRDELTTFN--LSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHhH------HHHHHHHc-C--cchHHHHHHhhc--ccCCcCCCC
Confidence 3556778899999999999999999987542 211111 24566666 3 334454433222 222222233
Q ss_pred hhhhhchhHHHHHhhc
Q 037142 96 FDQVRPCLPTLAQLVH 111 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~ 111 (383)
..--..++|.+++++.
T Consensus 83 ~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 83 EEHRPELMPVVLRILY 98 (141)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3444778888888775
No 390
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.17 E-value=3e+02 Score=26.26 Aligned_cols=139 Identities=13% Similarity=0.093 Sum_probs=83.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc--------cCCHHHHHHHHHHHHHhccCCCch
Q 037142 64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--------SNDEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
+++.+ -+.++..+..|+..|.. +. ....++|.++.++. ..+.+...++...++.|..+ ++-
T Consensus 212 It~a~-~g~~~~~r~eAL~sL~T---Ds------GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~i 280 (576)
T KOG2549|consen 212 ITEAC-TGSDEPLRQEALQSLET---DS------GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PNI 280 (576)
T ss_pred HHHHH-hcCCHHHHHHHHHhhcc---Cc------cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-Ccc
Confidence 44444 34566777776665433 21 23446667666665 24678888899999999987 443
Q ss_pred HHHHHHHhCcHHHHHHhcCC----------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc-cchhHH
Q 037142 136 EIQAVIEAGVCPRLVKLLGH----------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIK 204 (383)
Q Consensus 136 ~~~~~~~~~~i~~l~~~L~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~ 204 (383)
...... +.++|.++.++-+ ..+.++.-|...+..++.......+. ++..++..+.+.+.+. ......
T Consensus 281 ~lepYl-h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 281 FLEPYL-HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred chhhHH-HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhh
Confidence 333322 3478888887643 34567888888888888665544443 4445666666666554 233444
Q ss_pred HHHHHHHHHHh
Q 037142 205 NYACWIISNIT 215 (383)
Q Consensus 205 ~~a~~~l~nl~ 215 (383)
.-++..|..+.
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 44555555443
No 391
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.15 E-value=17 Score=32.05 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=47.5
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhh--CCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLL--ASPSDDIRMQSVWALGNIAAESPRFRDLVL 56 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 56 (383)
|+|++.++....+.+-|+++.++.-. ++.+|-+++-++.++.++..++.++++.+.
T Consensus 382 ~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 382 FLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 46788889999999999999887765 458899999999999999998888777664
No 392
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=42.93 E-value=2.7e+02 Score=30.56 Aligned_cols=139 Identities=15% Similarity=0.077 Sum_probs=74.1
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccc
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 181 (383)
++...-.++.+.++.++.-+......+-.. .+.. ....++..|+..+.+++..-...|+.+|..|+..++.....
T Consensus 436 iL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~-fds~----~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~ 510 (1426)
T PF14631_consen 436 ILSLAQSLLRSKEPSVREFGSHLYKYLFKE-FDSY----CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP 510 (1426)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHS-S-HH----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhh-ccch----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH
Confidence 333444566688899988888888877766 3322 22346788888887766666689999999999765533221
Q ss_pred eecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEA 249 (383)
Q Consensus 182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 249 (383)
+ +..+..++..+..- +..=.+....+++.++......... ++..+.-.+-+.+.+.+...|+..
T Consensus 511 f--a~~l~giLD~l~~L-s~~qiR~lf~il~~La~~~~~~~s~-i~del~ivIRKQLss~~~~~K~~G 574 (1426)
T PF14631_consen 511 F--ATFLKGILDYLDNL-SLQQIRKLFDILCTLAFSDSSSSSS-IQDELHIVIRKQLSSSNPKYKRIG 574 (1426)
T ss_dssp T--HHHHHGGGGGGGG---HHHHHHHHHHHHHHHHHHSS---H-HHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred H--HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCcccchh-hHHHHHHHHHHhhcCCcHHHHHHh
Confidence 1 12333444444443 3333344566666665321111111 222223334445666777777653
No 393
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.74 E-value=3.9e+02 Score=27.36 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=101.8
Q ss_pred HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-----CCC--ChhhhhchhHHHHHhhccC--CHHHHHHH
Q 037142 51 FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-----PRP--IFDQVRPCLPTLAQLVHSN--DEHVMSNA 121 (383)
Q Consensus 51 ~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-----~~~--~~~~~~~~i~~l~~ll~~~--~~~~~~~~ 121 (383)
..+.+-+...++.++.++..+.++.++..|..+|.-+++.+ |.. ........+..|+..+-.. ........
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~ 261 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSG 261 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHH
Confidence 33444456678889999976667888888888887777663 221 1222245555555544432 22333333
Q ss_pred HHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCC---ChHHHHHhhccc
Q 037142 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG---ALPYLLGLLIDN 198 (383)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~l~~ll~~~ 198 (383)
+..+..+... ........ .....+.+-....++.+....+.++..-. .+..+.+.+.. .+..=...+..+
T Consensus 262 i~vlI~ll~~-~r~~~~~~---~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pP 334 (838)
T KOG2073|consen 262 IIVLISLLNP-RRDTVETN---STTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPP 334 (838)
T ss_pred HHHHHHhcCc-cccccccc---ceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCC
Confidence 3333333321 01000000 00011111122234444444444443221 11111121111 111112222223
Q ss_pred cchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCch--hHHHHHHHHHHHhcC---------CCCHHH-H
Q 037142 199 HKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVF--YIKKEAAWAISNATF---------GGTHEQ-I 265 (383)
Q Consensus 199 ~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~--~v~~~a~~~l~~l~~---------~~~~~~-~ 265 (383)
-...|...+..+..+.. .+....+.+...+++..+.+....-.. -+..+.-.+|..... ..+... .
T Consensus 335 -LG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~~~~~~~~s~~~~~v~ 413 (838)
T KOG2073|consen 335 -LGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDETNNDSNISADNEIVD 413 (838)
T ss_pred -cchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhccccccccCCCchHHHH
Confidence 44567777777776654 444555555667777777777764322 244444444433333 222233 3
Q ss_pred HHHHHcCChHHHHhhcC
Q 037142 266 KYLEREGCIKPLCDLLL 282 (383)
Q Consensus 266 ~~l~~~~~i~~L~~ll~ 282 (383)
..+.+.++....+....
T Consensus 414 ~~l~~c~l~~~~l~~~e 430 (838)
T KOG2073|consen 414 HLLQDCQLSDNILNQWE 430 (838)
T ss_pred HHHHHhhhhhhhhhccc
Confidence 33334566666665554
No 394
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.62 E-value=7.1e+02 Score=30.32 Aligned_cols=183 Identities=9% Similarity=-0.038 Sum_probs=90.9
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh--C--cHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--G--VCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~--~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
....+.+..+...+.+++..+++.+..+|.++... .......+.+. . ..|....-++...-.++.-.+.++..+.
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~-s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~ 1200 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISEL-SGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL 1200 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH
Confidence 34477888888888899999999999999999876 32222222221 0 0111112222222333333334443333
Q ss_pred cCCCccccceec----------------CCChHHHHHhhccc---cchhHHHHHHHHHHHHhcCCHHHHHHH--HhcCCh
Q 037142 173 RGDYSQTLYIIN----------------CGALPYLLGLLIDN---HKTSIKNYACWIISNITAGNREQIQAV--IDAGLI 231 (383)
Q Consensus 173 ~~~~~~~~~l~~----------------~~~i~~l~~ll~~~---~~~~~~~~a~~~l~nl~~~~~~~~~~~--~~~~~l 231 (383)
...+.......+ ...+. +.+..... ....+|..+..+++......+-..... ...+++
T Consensus 1201 ~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii 1279 (3550)
T KOG0889|consen 1201 SLGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKII 1279 (3550)
T ss_pred HcCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHH
Confidence 332221110000 00000 11111111 022346667777766554332211111 235567
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC
Q 037142 232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL 282 (383)
Q Consensus 232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 282 (383)
..+...+....+++...+...+.+..... ...-...++.+.-+.|..+-+
T Consensus 1280 ~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~-~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1280 AVFFKSLYKRSSELIEVALEGLRKVLAQD-VKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhhcc-ccccHHHHHhhHHHHHHhhhH
Confidence 77888888888888888888887776552 222233333333344444443
No 395
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=42.62 E-value=77 Score=20.95 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=30.4
Q ss_pred HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 319 YAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 319 ~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
-.+.+.....-..+..+-.|++++|...|..++..+
T Consensus 34 t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 34 TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 356678888888899999999999999999988764
No 396
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=42.01 E-value=99 Score=21.41 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhc
Q 037142 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLC 129 (383)
Q Consensus 72 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~ 129 (383)
.+..+|+.|+..+..++.............++..+.+.+.+++ .....-|+.+|..+.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999977544444455677777887777543 556666777776663
No 397
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.51 E-value=2.3e+02 Score=24.30 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=46.8
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 037142 272 GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351 (383)
Q Consensus 272 ~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 351 (383)
..+..|+.++..+.+.++..++..|..++...+-.+. ...+.+..+.+++..+. ...|.+++
T Consensus 188 ~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~---------------~~~dlispllrlL~t~~---~~eAL~VL 249 (262)
T PF14225_consen 188 QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP---------------HGADLISPLLRLLQTDL---WMEALEVL 249 (262)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC---------------cchHHHHHHHHHhCCcc---HHHHHHHH
Confidence 3677899999999999999999999999987665432 23334566677775544 44666666
Q ss_pred HHhc
Q 037142 352 ETYW 355 (383)
Q Consensus 352 ~~~~ 355 (383)
+...
T Consensus 250 d~~v 253 (262)
T PF14225_consen 250 DEIV 253 (262)
T ss_pred HHHH
Confidence 6543
No 398
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.06 E-value=3.3e+02 Score=26.04 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=68.1
Q ss_pred hHHHHHHhcCC-------CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc----------cCCHHHHHHHHH
Q 037142 61 LIPLLTQLNNH-------ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH----------SNDEHVMSNACW 123 (383)
Q Consensus 61 i~~L~~~L~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~----------~~~~~~~~~~~~ 123 (383)
+|.++.++... .|-......+..+..|..+....-......++|.++.++- ++.+.+|.-++.
T Consensus 241 lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ 320 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAAR 320 (576)
T ss_pred HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHH
Confidence 56666666321 3455666777788888877644444555778888887763 334789999999
Q ss_pred HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhh
Q 037142 124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVGNI 171 (383)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l 171 (383)
.+..++.. ..+....+ ...++..+...+.++ ......=++..|..|
T Consensus 321 ll~~i~k~-f~~~y~~L-~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 321 LLAQICKN-FSTLYNNL-QPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHh-hhhHHHHH-HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 99999987 44444443 333666666666653 334444455555444
No 399
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.68 E-value=4.9e+02 Score=27.59 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=76.9
Q ss_pred ChHHHHHh-hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142 18 AVPIFVKL-LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI 95 (383)
Q Consensus 18 ~i~~L~~l-L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 95 (383)
++..|... |++.+.+.+..++..+..+-...+++-..+-+.--++.++.-+ ......++...+.+|.--...- ..+
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkilEyAVtvvncvP- 544 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKILEYAVTVVNCVP- 544 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHHHHHHhhhccCc-
Confidence 34444443 4668889999999999888877777666666667788888777 3444555555555443221110 011
Q ss_pred hhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH 155 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~ 155 (383)
.+..+. |.-+++.+ .......++.....+... +....+.+.+-|+++.|...++.
T Consensus 545 ---eqELlS-LCvLLqqpIssalkhtIlsffvKLIsf-DqqyKkvlREVGvLevLqddlkq 600 (2799)
T KOG1788|consen 545 ---EQELLS-LCVLLQQPISSALKHTILSFFVKLISF-DQQYKKVLREVGVLEVLQDDLKQ 600 (2799)
T ss_pred ---HHHHHH-HHHHhcchhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHhhHHHHHHHHHHH
Confidence 122232 23344433 345555566666677766 44455556777888888766654
No 400
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=39.05 E-value=1.2e+02 Score=24.78 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHh
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~l 194 (383)
..+...+...|..++.+ +.++...+.+. ++.++..+.......-..+..++..+..++......+.+. .++.++.+
T Consensus 75 ~~l~~~~~~lL~~f~~~-n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRG-NRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHh-CHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHH
Confidence 46778899999999998 77777776654 4433333322211112345666677777777666555443 47788888
Q ss_pred hccccchhHHHHHHHHHHHHhc
Q 037142 195 LIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 195 l~~~~~~~~~~~a~~~l~nl~~ 216 (383)
+... . -...-+..|+.++.
T Consensus 151 l~~~-g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 151 LRKH-G--RQPRYLDFLSSLCV 169 (207)
T ss_dssp ----------------------
T ss_pred HHHc-C--CChHHHHHHhhhcc
Confidence 7663 2 22334555555554
No 401
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=39.02 E-value=95 Score=20.54 Aligned_cols=35 Identities=17% Similarity=0.461 Sum_probs=30.2
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
.+.+.+.+.-..+..+-.|++++|...|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55688888888899999999999999999988764
No 402
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.95 E-value=6.2e+02 Score=28.63 Aligned_cols=266 Identities=14% Similarity=0.091 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHH------HHHhhcCCCCC--C-Chhhhhc
Q 037142 32 DIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATW------TLSNLCGGKPR--P-IFDQVRP 101 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~------~L~~l~~~~~~--~-~~~~~~~ 101 (383)
.+...|....+.+.- -++..+..+++.+ +..+.-.+......++.++.. ++..++..... . ......-
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~~--~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~ 876 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEHF--PESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSS 876 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHH--HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 556666666666653 3344444444332 111211111222333333332 44455554321 1 1222344
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCcccc
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTL 180 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 180 (383)
.+..+..-+...++..+-.+..++..++.. .+ ....+ ++..+.++.-+.+ .|+-.|.--.-+++.+-........
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~-v~-~~~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQV-VG-SAPFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHh-cc-ccchH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 555566667788899999999999998865 21 11111 1245667777766 3443333323333333222221111
Q ss_pred ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-C--chhHHHHHHHHHH---
Q 037142 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-A--VFYIKKEAAWAIS--- 254 (383)
Q Consensus 181 ~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~--~~~v~~~a~~~l~--- 254 (383)
.-.-...+..+..+.+++..+.|+.+++.++.-++..........+.. .+..+..++-+ + ..+++..--..+.
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 001113466777777777567999999999998876443333222222 23333333332 2 2223222111111
Q ss_pred ---Hh-------cCCCCH-HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 255 ---NA-------TFGGTH-EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 255 ---~l-------~~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
++ ...+.. +....+ ..-.+-...-++..+++.++..+..++.++--..+.
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~d~lnqa~ai~clqqlhlFapr 1092 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR 1092 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch
Confidence 11 111110 111111 111222233344566888898999999888776654
No 403
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.50 E-value=3.3e+02 Score=27.69 Aligned_cols=165 Identities=12% Similarity=0.058 Sum_probs=84.4
Q ss_pred CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHH
Q 037142 28 SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLA 107 (383)
Q Consensus 28 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~ 107 (383)
++||.-+..++..++.++.--| +.+.++.++..=-+++++--.+.++.+..+.+.-.. .+..++...+.
T Consensus 113 snDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk----~FA~si~gkis 181 (970)
T KOG1988|consen 113 SNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK----DFACSICGKIS 181 (970)
T ss_pred CCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh----hhHHHHHHHHH
Confidence 4666666666666666553222 234445554433234444334555555555554321 22233444444
Q ss_pred HhhccCC--HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceec
Q 037142 108 QLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIIN 184 (383)
Q Consensus 108 ~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 184 (383)
.+++..+ +..+..++.++..+... ..... ........++.. +..+-....+.++++++...- ..-
T Consensus 182 ~mIef~d~~~~mkL~li~Vfs~M~c~--at~A~-----ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs~-----~ai 249 (970)
T KOG1988|consen 182 DMIEFLDLPVPMKLSLIPVFSHMHCH--ATGAS-----RAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRSL-----VAI 249 (970)
T ss_pred HHhhcccCCCCcchhHhHHHHHhcch--hhhhH-----HHHHHHHHHhcCCCcccceeeehhhhHHHHHHHH-----HHh
Confidence 5555333 44555666666666644 11111 133444555543 344444555666666653221 111
Q ss_pred CCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 185 CGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 185 ~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
.+-++.+.+.++.+....++..+++.+.+++
T Consensus 250 ~eq~d~l~q~~ked~~kivr~~vl~kl~~La 280 (970)
T KOG1988|consen 250 SEQSDVLLQFLKEDERKIVRLKVLRKLDFLA 280 (970)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 2456778888875546667777888777765
No 404
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.31 E-value=2.7e+02 Score=24.30 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=72.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc------CCHHHHHHHHHHHHHhccCCCch
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS------NDEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
..+++.|.+..+++++..|+.+|.+=+ .....+|+.+.++.. .+.+.........+.+..+ ..-
T Consensus 200 ~kvisal~dEs~~~~r~aAl~sLr~ds---------GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N-~~i 269 (450)
T COG5095 200 DKVISALLDESDEQTRDAALESLRNDS---------GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKN-KYI 269 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc---------cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC-Cce
Confidence 334444435567778887777665422 234567777777763 3456666666677777766 332
Q ss_pred HHHHHHHhCcHHHHHHhc-----CCCCh-----hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHh-hccccchhHH
Q 037142 136 EIQAVIEAGVCPRLVKLL-----GHPSQ-----SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL-LIDNHKTSIK 204 (383)
Q Consensus 136 ~~~~~~~~~~i~~l~~~L-----~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~l-l~~~~~~~~~ 204 (383)
.....+. .++|.++.++ ..... -++..|...+...+...+.... -++..+...+.+. |........+
T Consensus 270 FvdPY~h-qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk-tLkPRvtrTllKafLD~~k~~sT~ 347 (450)
T COG5095 270 FVDPYLH-QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK-TLKPRVTRTLLKAFLDREKTESTQ 347 (450)
T ss_pred eecHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh-hhchHHHHHHHHHHHhcccccchh
Confidence 2222222 2455555544 23222 3666677777776654443222 2223344444432 3322133445
Q ss_pred HHHHHHHHHHh
Q 037142 205 NYACWIISNIT 215 (383)
Q Consensus 205 ~~a~~~l~nl~ 215 (383)
.-|++.++-+.
T Consensus 348 YGalkgls~l~ 358 (450)
T COG5095 348 YGALKGLSILS 358 (450)
T ss_pred hhhhhhhhhhc
Confidence 55555555443
No 405
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=38.05 E-value=1.1e+02 Score=19.83 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcH
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVC 146 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i 146 (383)
.+++.+.+--. |.........+...+...+..-++...-+++|.++-+-.. +.+.++.+....++
T Consensus 4 il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~-p~~~l~~vf~~~Fl 68 (71)
T PF06743_consen 4 ILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRF-PEDLLNKVFSPDFL 68 (71)
T ss_pred HHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhC-CHHHHHHHcCHHHH
Confidence 44555555533 3333445566666677776777799999999999999888 76666666554333
No 406
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.10 E-value=1.1e+02 Score=27.10 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 285 DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 285 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
|.++...++..-..|++++.+.. -....+.|..|+++++.+|...++.++..+..-
T Consensus 1 D~elv~~IL~Ft~lLLEnc~NRs-----------------lYsS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 1 DKELVLAILRFTRLLLENCGNRS-----------------LYSSSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred CHHHHHHHHHHHHHHHhccCCCC-----------------ccccHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 45677778888888888887654 234578999999999999999999999765544
No 407
>PF15573 Imm27: Immunity protein 27
Probab=36.97 E-value=80 Score=25.91 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
+.|++++++..|+.+..-|++.++.+|.+.
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~THd 78 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATHD 78 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcchH
Confidence 568999987889999999999999999876
No 408
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.03 E-value=3.7e+02 Score=28.16 Aligned_cols=131 Identities=8% Similarity=0.027 Sum_probs=84.1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCChHHHH
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQIKYLEREGCIKPLC 278 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~~~~i~~L~ 278 (383)
.+.+|..++..|+--+...|+ .+++...+.++-=.|++.+..||..++.+|..|..... ......+ -..+=.-++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF-tsRFK~RIV 375 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF-TSRFKDRIV 375 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH-HHHHHHHHH
Confidence 788999988888887754433 45566677777777888999999999999999987631 2223332 234555667
Q ss_pred hhc-CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037142 279 DLL-LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILET 353 (383)
Q Consensus 279 ~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 353 (383)
++. .+-+..|+...+..+...... + ++ .-.-+..+..++.+.+.++...|...+..
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~-g-----------------~L-~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSS-G-----------------LL-SDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcc-c-----------------cc-ChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 776 333555555444333222211 1 12 22234667788888999888888776643
No 409
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.51 E-value=1.8e+02 Score=21.14 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=44.0
Q ss_pred cHHHHHHhcC-CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH-HHHHHHHHHHHhc
Q 037142 145 VCPRLVKLLG-HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI-KNYACWIISNITA 216 (383)
Q Consensus 145 ~i~~l~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~-~~~a~~~l~nl~~ 216 (383)
++|.+...|. +..++.+..+.-.++.++...+ ++..++..++..+-....... ...++.++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 5788888888 6788999999999999986544 222445555554432213333 4778888887774
No 410
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=33.81 E-value=1e+02 Score=24.02 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=44.7
Q ss_pred HHHHHHhhhhcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142 163 QALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 241 (383)
.-..+|..++...+... .+. .-+..+++.+..- ..++...-+.++.-+...+...++.+ +-.|-+.|.+.
T Consensus 74 ~~idlL~~lv~~~p~~v---le~~~~l~~~ld~l~~l-p~~~a~~ll~Al~PLi~~s~~lrd~l-----ilvLRKamf~r 144 (158)
T PF14676_consen 74 QYIDLLSELVRKAPLTV---LECSSKLKELLDYLSFL-PGDVAIGLLRALLPLIKFSPSLRDSL-----ILVLRKAMFSR 144 (158)
T ss_dssp HHHHHHHHHHHH-HHHH---S-S-HHHHGGGGGTTTS--HHHHHHHHHHHHHHHTT-HHHHHHH-----HHHHHHHTT-S
T ss_pred HHHHHHHHHHHHChHHH---HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCHHHHHHH-----HHHHHHHHccc
Confidence 34577777775554221 111 1122233333333 55666667777777777776666554 34566677778
Q ss_pred chhHHHHHHHHH
Q 037142 242 VFYIKKEAAWAI 253 (383)
Q Consensus 242 ~~~v~~~a~~~l 253 (383)
+...|..|+.-+
T Consensus 145 ~~~~R~~Av~Gf 156 (158)
T PF14676_consen 145 ELDARQMAVNGF 156 (158)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh
Confidence 888888877654
No 411
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.28 E-value=2.1e+02 Score=25.47 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhcCCC--ChhHHHHHHHHHHhhcCCCC
Q 037142 32 DIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLNNHE--NLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~~~--~~~~~~~a~~~L~~l~~~~~ 92 (383)
.+|..|+.++..+. .++.....++..+ ++..|++++..+. ...++..|+.+|..++.+..
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 34444544444444 3456667777776 8899999995332 56889999999999998753
No 412
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=32.19 E-value=5e+02 Score=25.55 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc--CCC-Ch-hHHHHHHHHHHhhcCCCCCCChhhhhchhHH
Q 037142 30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN--NHE-NL-SMKRIATWTLSNLCGGKPRPIFDQVRPCLPT 105 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~--~~~-~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 105 (383)
+..-...-+|+++.++..-.+..+.-.--+++..|+.+.. +.. +. -+..+.+.+++..-+. -.....+...++..
T Consensus 496 sw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRF-Lkahw~FLkTVv~K 574 (1053)
T COG5101 496 SWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRF-LKAHWSFLKTVVKK 574 (1053)
T ss_pred chhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHH-HHHHHHHHHHHHHH
Confidence 3456677899999998654443332222244555554431 111 11 1222222222221110 01123445677788
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 106 LAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 106 l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
|..++......++..||..+..+...
T Consensus 575 LFEFMhE~HEGvqDMACDtFiKIvqK 600 (1053)
T COG5101 575 LFEFMHEDHEGVQDMACDTFIKIVQK 600 (1053)
T ss_pred HHHHHhhhhhhHHhhhHHHHHHHHHh
Confidence 88888888899999999999888865
No 413
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=31.50 E-value=3.5 Score=29.25 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=35.3
Q ss_pred HHHhc--cHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCcccccccccccchh
Q 037142 323 VEEAK--GLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPGLLYAGNEENEEE 377 (383)
Q Consensus 323 l~~~~--~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (383)
|...| +-+.|..|+.||+.+|+-.|....-.|+..+....++.+-.++-.+.-..
T Consensus 41 Lk~r~gd~r~aLl~LL~hpn~~VRl~AA~~~L~~~p~eA~~~Le~ia~~~~~~~a~~ 97 (106)
T PF09450_consen 41 LKSRGGDQRDALLPLLKHPNMQVRLWAAAHTLRYAPEEARKVLEEIASSKWFPQAGD 97 (106)
T ss_dssp HHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTTTT-HHHHHHHHHHHHHHT-TTHHHH
T ss_pred HHhcCcchHHHHHHHHcCCChhHHHHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCCc
Confidence 44444 34778899999999999999887777777666666655555544444333
No 414
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=31.50 E-value=1.6e+02 Score=28.69 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=63.2
Q ss_pred hHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchH
Q 037142 61 LIPLLTQLNNHE-NLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDE 136 (383)
Q Consensus 61 i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~ 136 (383)
+..+-..+...+ +..-....+|++++++..- +.....+.-+++..|+.+.... ...- ..++.-+..+..+ .+..
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnK-AVvASnIMyvvGQ-YpRF 560 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNK-AVVASNIMYVVGQ-YPRF 560 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcc-hhhecceeeeecc-chHH
Confidence 445555552222 4556678899999998754 2223344456666666655411 1111 1111111122222 1111
Q ss_pred ---HHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 137 ---IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 137 ---~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
...+... ++..|++++..+...++.-||..+-.++...+
T Consensus 561 Lkahw~FLkT-Vv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~ 602 (1053)
T COG5101 561 LKAHWSFLKT-VVKKLFEFMHEDHEGVQDMACDTFIKIVQKCP 602 (1053)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCc
Confidence 1123333 67888999999999999999999988886655
No 415
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=31.31 E-value=4.2e+02 Score=24.37 Aligned_cols=51 Identities=18% Similarity=0.027 Sum_probs=42.0
Q ss_pred CCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 037142 4 SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDL 54 (383)
Q Consensus 4 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 54 (383)
+.+++..+.+++...+-.|+.++.+.||..|+..-.+|.++...-...|..
T Consensus 164 ~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~f 214 (457)
T KOG2085|consen 164 DFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPF 214 (457)
T ss_pred ccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346678889999999999999999999999999999999888644444443
No 416
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=29.91 E-value=2.1e+02 Score=20.52 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=52.0
Q ss_pred CChHHHHHHhcCCC---ChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc--CCHHHHHHHHHHHHHhccCCC
Q 037142 59 AALIPLLTQLNNHE---NLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS--NDEHVMSNACWGLSLLCDGGK 133 (383)
Q Consensus 59 g~i~~L~~~L~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~ 133 (383)
|++..+-+.+.+.. +..-+..++.++..+.+-. ......+.|.+..+|++ ..++++..++.+-..+....+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~----g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM----GKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 55555555564332 4455778888887777632 12345566666666663 357788888888877776534
Q ss_pred chHHHHHHHhCcHHHHHH
Q 037142 134 NDEIQAVIEAGVCPRLVK 151 (383)
Q Consensus 134 ~~~~~~~~~~~~i~~l~~ 151 (383)
.+....+.+. .+..+++
T Consensus 87 ~~~l~~ll~~-~~~~i~~ 103 (107)
T smart00802 87 EEELGPLLDQ-IFAAILP 103 (107)
T ss_pred HHHHHHHHHH-HHHHHHH
Confidence 4445555443 3334433
No 417
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=29.84 E-value=5.4e+02 Score=25.14 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=69.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh--hh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF--DQ 98 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~ 98 (383)
.++.-..+-++.+|..+...|+-....-|++ ++...++...-..| ++.+..++.....++-.++...|.... ..
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3444455567888888888888777544443 33334566666677 677899999999999999998866552 12
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhc
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLC 129 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~ 129 (383)
....-..++.++..+..-+|..++..+..+.
T Consensus 355 ~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 355 VERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 2445555666666444347777777766555
No 418
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.57 E-value=7e+02 Score=27.65 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=70.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL 149 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l 149 (383)
.++++.++..+......+.... +......++..|+.++-+++..-...|+.+|..++.. .......+ +..+..+
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~-~~~~l~~f--a~~l~gi 518 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK-NPSELQPF--ATFLKGI 518 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHT--HHHHHGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-cHHHHHHH--HHHHHHH
Confidence 5677888887777666666543 2223466888888888766665557889999999975 33333332 1234455
Q ss_pred HHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHH
Q 037142 150 VKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNY 206 (383)
Q Consensus 150 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~ 206 (383)
+..+..=+..-.......|+.++........ -++..+--.+-+.|.+. +..++..
T Consensus 519 LD~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~~ 573 (1426)
T PF14631_consen 519 LDYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKRI 573 (1426)
T ss_dssp GGGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHHH
Confidence 5555553333445567777777744321111 11112223344556666 6655544
No 419
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.39 E-value=6.1e+02 Score=25.64 Aligned_cols=102 Identities=14% Similarity=0.238 Sum_probs=69.0
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
.|.+|..+-.++-+.++.+++..+..+....|+.-..+ +..++.-| -+++..+...|...|.+|....|.....
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 45555555556778999999999999888777765444 56788888 5777888889999999998877665443
Q ss_pred hhhchhHHHHHhhccC--CHHHHHHHHHHHHHhc
Q 037142 98 QVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLC 129 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~ 129 (383)
++.-+-.++-.+ +.....+++-+|..+.
T Consensus 379 ----vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 ----VIDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred ----hHHHHHHHHcccCccccceeehhhhhhhhH
Confidence 333344444433 3445555555555444
No 420
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=29.28 E-value=4e+02 Score=24.08 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
.++...+..+|..|... +.....-.+.+++..+..-|.+. ....++.+|.-.+..-+
T Consensus 211 ~D~~~~~~~~Ls~LisY--h~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP 267 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISY--HSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMP 267 (356)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhH
Confidence 45666666677666654 22222222334556666555442 33455555555554333
No 421
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.22 E-value=6e+02 Score=25.50 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhc----CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142 35 MQSVWALGNIAA----ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC 88 (383)
Q Consensus 35 ~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~ 88 (383)
....+||..|+. -.+.+|..+...|++..+++.|-+++.-....-+..+|..|.
T Consensus 347 ~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylL 404 (865)
T KOG2152|consen 347 PMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLL 404 (865)
T ss_pred cHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 334455555542 357899999999999999999955443333333333444433
No 422
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=29.14 E-value=2.5e+02 Score=27.79 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=103.7
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHH---HHhcCChHHHHHHhcCC-----CChhHHHHHHHHHHhhcC
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDL---VLGEAALIPLLTQLNNH-----ENLSMKRIATWTLSNLCG 89 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~---~~~~g~i~~L~~~L~~~-----~~~~~~~~a~~~L~~l~~ 89 (383)
++.+..-+++.+..++..++..+..+.+.-+ ...+. +++...=...++.|+.. .++-+-..++..++ ++.
T Consensus 248 V~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~ 326 (993)
T COG5234 248 VDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAG 326 (993)
T ss_pred HHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhh
Confidence 4444555566778889999888888774321 11111 22221111133334211 23333333333333 333
Q ss_pred CCCCCChhhhhchhHHHHHhhc--------cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH-hcCCCChhh
Q 037142 90 GKPRPIFDQVRPCLPTLAQLVH--------SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK-LLGHPSQSV 160 (383)
Q Consensus 90 ~~~~~~~~~~~~~i~~l~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~-~L~~~~~~v 160 (383)
-.+-.-.. .-+.+.+.+-+. .+...+|..++..++.+.+.+.+...+. .++.++-.++. .+-+++-.+
T Consensus 327 ~~~id~~d--~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~-lqt~L~hll~~~alFDpel~v 403 (993)
T COG5234 327 AGLIDYSD--CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEG-LQTNLIHLLLQTALFDPELNV 403 (993)
T ss_pred ccccchhh--hhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchh-HHHHHHHHHHhhhhcCchhhh
Confidence 22111000 112222222222 2235788888888887776522222222 23334444555 567788889
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH-HHHHHhh
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG-PLVNLLQ 239 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~-~L~~ll~ 239 (383)
+..|..+|..+.-.+... ... .-+++++.-. +-.-..++-+.+.......++.+... +++. .|..-+.
T Consensus 404 Rr~a~Aal~E~iGR~~s~---a~g----~~lIslIN~~-sv~r~s~csg~~~r~~~~~~k~~~Ce---dVF~diLl~Nl~ 472 (993)
T COG5234 404 RRAATAALFEVIGRHASI---ADG----LSLISLINYV-SVTRISNCSGDLCRKVAHFPKFRSCE---DVFQDILLTNLQ 472 (993)
T ss_pred hhHHHHHHHHHhccCCCc---ccc----hhhhhhccce-ecchhhhcchHHHHHhcCccccchHH---HHHHHHHHhhhh
Confidence 998888887776332111 111 1122333322 11113444455555544333222110 1111 2444445
Q ss_pred cCchhHHHHHHHHHHHhcCC
Q 037142 240 NAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 240 ~~~~~v~~~a~~~l~~l~~~ 259 (383)
|-++++|....+.|..+...
T Consensus 473 H~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 473 HWDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred ccchhhhhhccccHHHHhcC
Confidence 55666666666666666544
No 423
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=28.96 E-value=2.1e+02 Score=22.87 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 037142 147 PRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI 226 (383)
Q Consensus 147 ~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~ 226 (383)
+.+.....+++.-++..+..++........ .. ...++.+-.++.++ +..++....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~-----~~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DF-----DLLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cH-----HHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 678888899999999888888877654411 11 12344555555556 889999999999999987766665555
Q ss_pred h
Q 037142 227 D 227 (383)
Q Consensus 227 ~ 227 (383)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 3
No 424
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.86 E-value=6.6e+02 Score=25.85 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHHHhhCCCC-----hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142 19 VPIFVKLLASPS-----DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR 93 (383)
Q Consensus 19 i~~L~~lL~~~~-----~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (383)
+..+-+++.+++ ...-+.++..+..++.+..+.-..-+..+ ++...+.=-+..++.+...+...++.++.. -.
T Consensus 464 ~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl-~~~~asik~S~~n~ql~~Tss~~igs~s~~-l~ 541 (982)
T KOG2022|consen 464 IDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRL-FETSASIKLSAPNPQLLSTSSDLIGSLSNW-LG 541 (982)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHH-HHhccccccccCChhHHHHHHHHHHHHHHH-Hh
Q ss_pred CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHhhh
Q 037142 94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALHTVGNI 171 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~~L~~l 171 (383)
.........+|.|.+-+. +.+...++...+..+|+. .........+. ++...-..+.. -.+..+....++++.+
T Consensus 542 e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~-C~~~L~py~d~-~~a~~~e~l~~~~~~~S~~~klm~sIGyv 617 (982)
T KOG2022|consen 542 EHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCET-CPESLDPYADQ-FSAVCYEVLNKSNAKDSDRLKLMKSIGYV 617 (982)
T ss_pred cCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHh-hhhhCchHHHH-HHHHHHHHhcccccCchHHHHHHHHHHHH
Q ss_pred hc
Q 037142 172 AR 173 (383)
Q Consensus 172 ~~ 173 (383)
..
T Consensus 618 ls 619 (982)
T KOG2022|consen 618 LS 619 (982)
T ss_pred HH
No 425
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=28.16 E-value=4.5e+02 Score=23.71 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHh-hc----cC-CHHHHHHHHHH
Q 037142 51 FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQL-VH----SN-DEHVMSNACWG 124 (383)
Q Consensus 51 ~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~l-l~----~~-~~~~~~~~~~~ 124 (383)
+-+.+++..+++.|+.+-..+.++.++..++.++.++... ..........+...+.++ +. .. ..++.......
T Consensus 1 ClEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~-~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 1 CLEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQ-SQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred ChHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHh-cccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Q ss_pred HHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHH
Q 037142 125 LSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIK 204 (383)
Q Consensus 125 l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~ 204 (383)
+..+| ..+... |.++.+.-+....-... .=..-..........--+..++..|+.++.+. ...-.
T Consensus 80 L~~lc--------~~i~~~---P~ll~~ff~~~~~~~~~---~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~ 144 (353)
T PF10257_consen 80 LNTLC--------SKIRKD---PSLLNFFFESSPSQAQE---EDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGD 144 (353)
T ss_pred HHHHH--------HHHHhC---HHHHHHHhcCCcccccc---ccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHH
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHh-cCChHHHHHHh
Q 037142 205 NY--ACWIISNITAGNREQIQAVID-AGLIGPLVNLL 238 (383)
Q Consensus 205 ~~--a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll 238 (383)
.+ ++-.+..++..++...+.+++ ..+-+.+..-+
T Consensus 145 ~Are~LLll~~l~~~~~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 145 FAREGLLLLMSLASEDPALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHcchhHHHHHHHH
No 426
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=28.16 E-value=1.3e+02 Score=17.61 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHH
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRD 53 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~ 53 (383)
+++++|.+.++..+.+.+.+|+.+..-+++-.+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 567777776667777777777777665554433
No 427
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.05 E-value=6.7e+02 Score=25.69 Aligned_cols=165 Identities=11% Similarity=0.006 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142 76 MKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH 155 (383)
Q Consensus 76 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~ 155 (383)
.+-.+...+.++....|.+ .++...+=.|...+..++.-+|-.+..+...--.+ -+ ...-...++..+.....+
T Consensus 40 eqpeavvr~~RLFek~Pfp--ifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~h---ln-~v~n~aE~lrri~~V~hs 113 (970)
T KOG1988|consen 40 EQPEAVVRFPRLFEKYPFP--IFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKH---LN-KVLNGAEFLRRIFYVDHS 113 (970)
T ss_pred cchHHHHHHHHHHhhCCch--hhhhHHHHHHHHHhccCcHHHHHHHHHHHhhcccc---ch-hhhhhhhhhheeEEeecC
Confidence 3445556666776665554 34444444555666677878887777777633322 11 111112355666666677
Q ss_pred CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHh-hccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142 156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL-LIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL 234 (383)
Q Consensus 156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~l-l~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L 234 (383)
.|+..+...+..++.+..--++. +....++.. +.+. ++---+.++.+..+.++.+.+....+ ...+
T Consensus 114 nDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~-helE~eaa~~Aaa~Faa~sk~FA~si-----~gki 180 (970)
T KOG1988|consen 114 NDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSH-HELEVEAAEFAAACFAAQSKDFACSI-----CGKI 180 (970)
T ss_pred CCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCc-cchhhHHHHHHHhhhhhhhhhhHHHH-----HHHH
Confidence 89999999999999887544432 335555543 3344 55566778888888887665554333 3455
Q ss_pred HHHhhcC--chhHHHHHHHHHHHhcCC
Q 037142 235 VNLLQNA--VFYIKKEAAWAISNATFG 259 (383)
Q Consensus 235 ~~ll~~~--~~~v~~~a~~~l~~l~~~ 259 (383)
.+++... ....|-.++.++..+...
T Consensus 181 s~mIef~d~~~~mkL~li~Vfs~M~c~ 207 (970)
T KOG1988|consen 181 SDMIEFLDLPVPMKLSLIPVFSHMHCH 207 (970)
T ss_pred HHHhhcccCCCCcchhHhHHHHHhcch
Confidence 5555543 556777788888888755
No 428
>PF15573 Imm27: Immunity protein 27
Probab=27.07 E-value=3.6e+02 Score=22.31 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=44.7
Q ss_pred hHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
=+.|++++++ .|..+...+.+.+..+|.++ +.+ +.+-+ ++|.+.....+-..+..+...++-
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~THd-DL~----~~nNl----~FLs~asE~~v~TF~s~A~~tlSy-------- 110 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATHD-DLR----DSNNL----RFLSSASEFGVFTFASGAITTLSY-------- 110 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcchH-hhh----cccce----ehHhhhhHHHHHHHHHHhhccchh--------
Confidence 4678888886 66777778888888888653 322 23322 334221223344445555555543
Q ss_pred hhhchhHHHHHhhc
Q 037142 98 QVRPCLPTLAQLVH 111 (383)
Q Consensus 98 ~~~~~i~~l~~ll~ 111 (383)
.++|.|+.+++
T Consensus 111 ---eVIPYLLaLle 121 (259)
T PF15573_consen 111 ---EVIPYLLALLE 121 (259)
T ss_pred ---hHHHHHHHHHH
Confidence 38999999997
No 429
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=27.05 E-value=4.8e+02 Score=25.34 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=42.3
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChh-hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142 64 LLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFD-QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~-~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 131 (383)
+..++...++..++-.++..++.+.... |..... ...........++.+.++-+...|+.++...+..
T Consensus 484 l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 484 LTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 3444434455557777777777777655 332222 2233333344456688888999999999888876
No 430
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.30 E-value=1.9e+02 Score=25.18 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=39.4
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh--------------HHHHHHHhcCChHHHHHHhc
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESP--------------RFRDLVLGEAALIPLLTQLN 69 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~i~~L~~~L~ 69 (383)
..+..+++-|.+++...|..|+.+|.-++.+.- .+...+.+.|+++.+..+|+
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456688888888999999999999999885431 23334567788888888773
No 431
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=26.19 E-value=5.5e+02 Score=24.06 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=63.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHh
Q 037142 250 AWAISNATFGGTHEQIKYLERE-GCIKPLCDLLLCPDP--QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEA 326 (383)
Q Consensus 250 ~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (383)
..++..+...+....+..+.+. ..+..|+..+.+++. +.+......+..++......+. .+...+..-+...
T Consensus 138 ~~~l~s~i~~~~~~ii~~lqed~~~l~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~-----~~~~~~fkTlv~~ 212 (458)
T KOG2175|consen 138 GNTLNSFIFFNKVNIVSLLQEDEKFLIELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQP-----QSRDAFFKTLVNK 212 (458)
T ss_pred hHHHHHHHHHhhhhhhhhhhcCchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCc-----chhhHHHHHHHHh
Confidence 4455554444333444444443 346667777766654 3344444555444443333221 2334456778888
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 327 KGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 327 ~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
|..+.++.....++.+++..+..++..+.+..
T Consensus 213 ~i~~~le~~~~~~d~~~r~~~~di~~~~ve~~ 244 (458)
T KOG2175|consen 213 GILDALEYVLKMPDTQVRSAATDILARLVEMS 244 (458)
T ss_pred hhHHHHHHHhcCCcchhhHHHHHHHHHHHhcC
Confidence 99999999999899999999998888776654
No 432
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.13 E-value=4.6e+02 Score=23.18 Aligned_cols=144 Identities=9% Similarity=0.016 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHHHhC-----------cHHHHHHhcC------CCChhhHHHHHHHHhhhhcCCC
Q 037142 114 DEHVMSNACWGLSLLCDGGKNDEIQAVIEAG-----------VCPRLVKLLG------HPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 114 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-----------~i~~l~~~L~------~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
...+|..|+.|+.....+ +.+....+.+.- ....++..|- ..|+.-..-|+.+|..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~-N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYN-NEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT--HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 467788888888887776 444444444320 1112444443 2344444567777777777666
Q ss_pred ccccceecC------------CChHHHHHhhcc----ccchhHHHHHHHHHHHHhcCCHHHHHHHHhc-CChHHHHHHhh
Q 037142 177 SQTLYIINC------------GALPYLLGLLID----NHKTSIKNYACWIISNITAGNREQIQAVIDA-GLIGPLVNLLQ 239 (383)
Q Consensus 177 ~~~~~l~~~------------~~i~~l~~ll~~----~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~-~~l~~L~~ll~ 239 (383)
..++.+.+- ..+..+..+|.. ..++.++..-+..|.--..+++.....++.. ..++.|+....
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhh
Confidence 554433321 134556665543 3366777777777777777888888888854 57899998754
Q ss_pred c---CchhHHHHHHHHHHHhcC
Q 037142 240 N---AVFYIKKEAAWAISNATF 258 (383)
Q Consensus 240 ~---~~~~v~~~a~~~l~~l~~ 258 (383)
. .+.-|+--++..|+-+..
T Consensus 210 ~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHH
Confidence 3 366777777777777654
No 433
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.06 E-value=2.2e+02 Score=26.92 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=49.8
Q ss_pred HHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 150 VKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 150 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
-....+.++++...+..++++++.+.......+-+..+-..++..+..+ .+.+-+.+.+++.-+.
T Consensus 334 k~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 334 KSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 3334558999999999999999988776665555556667788888887 8888888887777665
No 434
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.58 E-value=3.5e+02 Score=21.55 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
+.+.... .+++.-.++.++.++....... ......++.+..++.+++.-++..+.|+|..++.. .++....+
T Consensus 108 ~~~~~w~-~s~~~~~rR~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWA-KSENEWVRRAAIVLLLRLIKKE-----TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAF 179 (197)
T ss_pred HHHHHHH-hCCcHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 3455555 6777778888877777666541 12345677777777778899999999999999987 55444443
No 435
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=24.92 E-value=4.3e+02 Score=25.62 Aligned_cols=76 Identities=21% Similarity=0.102 Sum_probs=45.0
Q ss_pred hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
..++-.+..++. .+...++-.++..++.+.....++..+ .+.. .+......+|.+.++-+...|+.+++.++...+
T Consensus 478 ~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~-~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 478 EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSP-ALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhh-HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 444444555553 233446666677777666542222222 2222 133444556788899999999999999987654
No 436
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.46 E-value=1.5e+02 Score=17.23 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=21.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037142 327 KGLEKIENLQRHDNYEIHEKSAKILET 353 (383)
Q Consensus 327 ~~~~~L~~l~~~~~~~v~~~a~~~l~~ 353 (383)
|.-+.|.+++..++...+..|..++..
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 455667788888899999999888865
No 437
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=24.43 E-value=3.6e+02 Score=21.36 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=87.1
Q ss_pred hHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH--hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142 188 LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI--DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265 (383)
Q Consensus 188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 265 (383)
=+.++++|+.. .++......|+.++.. ....++ +.+..+.|.+++.+.+..--..|......+...-..+.+
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHH
Confidence 45677777654 3445556666666542 222333 677888888887664444446788888888843345666
Q ss_pred HHHHHcCChHHHHhhcCCCC-HHHHHH--HH-HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCH
Q 037142 266 KYLEREGCIKPLCDLLLCPD-PQIVTV--CL-KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNY 341 (383)
Q Consensus 266 ~~l~~~~~i~~L~~ll~~~~-~~v~~~--al-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~ 341 (383)
..+++. +.+...+.|..+. .++... |+ .+++..+..-+... ..+.+..++. . .++.+.++.+.+.+
T Consensus 79 ~~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~-------~~~~vk~L~~-~-mv~Sv~elV~~g~E 148 (174)
T PF04510_consen 79 IPFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM-------RVDLVKELLP-K-MVKSVKELVERGME 148 (174)
T ss_pred HHHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHH-H-HHHHHHHHHHcccH
Confidence 665554 7777777776552 333322 22 22232222211110 0112222222 1 46777888888888
Q ss_pred -HHHHHHHHHHHHhcC
Q 037142 342 -EIHEKSAKILETYWC 356 (383)
Q Consensus 342 -~v~~~a~~~l~~~~~ 356 (383)
....++..=++.++.
T Consensus 149 ~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 149 VGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 778888877776654
No 438
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=23.75 E-value=3.7e+02 Score=21.28 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=59.5
Q ss_pred CChHHHHHhhccccchhHHHHHHHHHHHHh-cCCHHHHHHHHhcCChHHHHHHhhcCc-hhHHHHHH------HHHHHhc
Q 037142 186 GALPYLLGLLIDNHKTSIKNYACWIISNIT-AGNREQIQAVIDAGLIGPLVNLLQNAV-FYIKKEAA------WAISNAT 257 (383)
Q Consensus 186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~-~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~------~~l~~l~ 257 (383)
|.=+-|.+++.+. ...-...|..++..|. ...++....+++. +++.+.+.|.++. .++..... .+..++.
T Consensus 42 ~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~ 119 (174)
T PF04510_consen 42 GGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIPFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLL 119 (174)
T ss_pred CCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHHHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHh
Confidence 4444444555443 3344477888888887 4455666666655 7777777777652 23321111 1111222
Q ss_pred CCCC-HHHHHHHHHcCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHh
Q 037142 258 FGGT-HEQIKYLEREGCIKPLCDLLLCPDP-QIVTVCLKALENILKV 302 (383)
Q Consensus 258 ~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~al~~l~~l~~~ 302 (383)
.... .+..+.+.. ..+..+-++...+.. ....+|+.-+..++..
T Consensus 120 e~~~~~~~vk~L~~-~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 120 ESSMRVDLVKELLP-KMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred ccccHHHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 2211 122333222 245555555656655 6667777777666653
No 439
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=23.12 E-value=83 Score=32.18 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=55.0
Q ss_pred ecCCChHHHHHhhc----cccchhHHHHHHHHHHHHhcCCHHHH-HHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 183 INCGALPYLLGLLI----DNHKTSIKNYACWIISNITAGNREQI-QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 183 ~~~~~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
...|.+..+-.++. +.....++...+.++..+...+.+.. +.++..-.+-.+-.+--+.+.+++..+..+|.|++
T Consensus 422 ~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a 501 (1697)
T KOG3687|consen 422 ARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLA 501 (1697)
T ss_pred CCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHH
Confidence 34466766665553 22245566666666666654332222 22222222222222222357789999999999999
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 037142 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDP 286 (383)
Q Consensus 258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 286 (383)
.+++......+.+ +++.++.--.++++
T Consensus 502 ~~C~t~~~~~lld--i~EA~~~rs~s~~~ 528 (1697)
T KOG3687|consen 502 EGCHTHHFNSLLD--IIEAVMARSLSPPP 528 (1697)
T ss_pred hhcchhcchhHHH--HHHHHHhcccCCCc
Confidence 9875444444433 55555554334443
No 440
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.12 E-value=1.7e+02 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=26.5
Q ss_pred HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
..+....+.+.+++.+++.+|++.|.+.+-.|-.
T Consensus 13 ~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 13 YRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3445556777899999999999999988877644
No 441
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=22.86 E-value=3.6e+02 Score=20.76 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=56.9
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC---CCChhhhhchhHHHHHhhccC--------C---HH------HHHH
Q 037142 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKP---RPIFDQVRPCLPTLAQLVHSN--------D---EH------VMSN 120 (383)
Q Consensus 61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~i~~l~~ll~~~--------~---~~------~~~~ 120 (383)
+..++..| .+....-|..++.-|..+...++ .........++..|..++..+ . .. =...
T Consensus 6 i~~~~~~L-~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~ 84 (155)
T PF11640_consen 6 INSILRLL-SSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSS 84 (155)
T ss_pred HHHHHHHH-hccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHH
Confidence 34466677 45556667777777777776653 223334455666666655411 1 11 2344
Q ss_pred HHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh----HHHHHHHHhhhhc
Q 037142 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV----LTQALHTVGNIAR 173 (383)
Q Consensus 121 ~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v----~~~a~~~L~~l~~ 173 (383)
++.++..+.+. .....+.-.-..++..+.+.+..++... ......+|..+..
T Consensus 85 ~a~~lR~~ve~-~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~ 140 (155)
T PF11640_consen 85 CASALRLFVEK-SNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILS 140 (155)
T ss_pred HHHHHHHHHHH-HHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHC
Confidence 55666555544 2222222111125677777777766333 2333444444443
No 442
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.67 E-value=1e+03 Score=26.04 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=101.4
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHH----HHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLL----TQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~----~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
+..+++-|...|+..+..|+..|..+.... ..+.. .|+++... +++ -+++..+|.....++..+...-...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~--~~e~~--~~il~~w~~i~~kl~-~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTS--DTEEL--KGILPEWLVIYAKLI-IDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccc--cchHH--hhhHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666688999999999999998542 11221 23343332 333 5778899998888888877543222
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH---HHHhCcHHHHHHhcCC----------------
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA---VIEAGVCPRLVKLLGH---------------- 155 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~i~~l~~~L~~---------------- 155 (383)
-.......+|...-...+.+..+...|-..+...... +..+. ..+..+.+.+.+.+-.
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~---ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee 194 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAE---EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEE 194 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcCh---hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHH
Confidence 2222344444444444455666666666666655532 22222 2222333333333211
Q ss_pred ---CChhhHHHHHHHHhhhhcCCC--ccccceec-CC---ChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 156 ---PSQSVLTQALHTVGNIARGDY--SQTLYIIN-CG---ALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 156 ---~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~-~~---~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
...++...++.++..+..... +.....-. .+ --+.+..++++. .+.++.+...++..+..
T Consensus 195 ~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k-~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 195 LESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSK-SPSIKVALLELLLSLID 263 (1312)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCC-CcchhHHHHHHHHHHHh
Confidence 123455556666655542211 11110000 11 124566777777 88888888877777764
No 443
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=22.50 E-value=4.6e+02 Score=21.88 Aligned_cols=129 Identities=12% Similarity=0.172 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCc--------------hhHH----HHHHHHHHHhcCCCC
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAV--------------FYIK----KEAAWAISNATFGGT 261 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~--------------~~v~----~~a~~~l~~l~~~~~ 261 (383)
+......+|..+..+...+ +....+.+.++++.+.+.+..-+ ..+. ..=...|+.++..
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~-eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-- 153 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSP-EGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-- 153 (226)
T ss_pred chHHHHHHHHHHHHHHcCc-HHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC--
Confidence 3455666777888887764 66667778889888888875321 1122 2224567778765
Q ss_pred HHHHHHHHHcCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC
Q 037142 262 HEQIKYLEREGCIKPLCDLLLCPDP-QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN 340 (383)
Q Consensus 262 ~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 340 (383)
+...+.+-+.+++..+..+...++. ++.... +.++ +. ..+...+. .|...+...+
T Consensus 154 ~~Gl~lLe~~~if~~l~~i~~~~~~~~l~kli---l~~L----DY---------~~~~~~R~--------iLsKaLt~~s 209 (226)
T PF14666_consen 154 PNGLKLLERWNIFTMLYHIFSLSSRDDLLKLI---LSSL----DY---------SVDGHPRI--------ILSKALTSGS 209 (226)
T ss_pred hhHHHHHHHCCHHHHHHHHHccCchHHHHHHH---HhhC----CC---------CCccHHHH--------HHHHHHhcCC
Confidence 6778888889999999999887533 332222 2222 11 11112222 2456688889
Q ss_pred HHHHHHHHHHHHHhc
Q 037142 341 YEIHEKSAKILETYW 355 (383)
Q Consensus 341 ~~v~~~a~~~l~~~~ 355 (383)
+.++..|.+.|..+.
T Consensus 210 ~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 210 ESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887654
No 444
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=22.31 E-value=5.9e+02 Score=23.05 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=74.1
Q ss_pred ChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc----C---------C----CChhHHHH
Q 037142 18 AVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN----N---------H----ENLSMKRI 79 (383)
Q Consensus 18 ~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~----~---------~----~~~~~~~~ 79 (383)
++..++++|+. .|+++-...+.-|.... .++..+...+ +..|.+.|. + . ...++...
T Consensus 142 ~~~~il~~L~~e~dWeV~s~VL~hLp~qL----~Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~ 216 (356)
T PF03542_consen 142 WFSVILQCLEHETDWEVYSYVLVHLPSQL----SNKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVC 216 (356)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHh----hhhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHH
Confidence 56788888875 78888888777666554 2333333333 544444331 0 0 02344455
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CC
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PS 157 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~ 157 (383)
...+|+.|.......+......++..+..-+.+. ....++.+|.-.+.. -+ ..+.+ .++.++.-|.. ..
T Consensus 217 ~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~E-mP---~s~~k--~L~~iL~kLs~i~tt 287 (356)
T PF03542_consen 217 VFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYE-MP---DSMKK--LLPSILLKLSKISTT 287 (356)
T ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHH-hH---HHHHH--HHHHHHHHHHhhccc
Confidence 5566666655443223333344555555444432 123334444433332 11 12211 34555555543 45
Q ss_pred hhhHHHHHHHHhhhhcCC
Q 037142 158 QSVLTQALHTVGNIARGD 175 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~ 175 (383)
..+....+..|..++...
T Consensus 288 ~~~Ai~ILEFLs~L~~lP 305 (356)
T PF03542_consen 288 PNMAIHILEFLSSLSRLP 305 (356)
T ss_pred hhhHHHHHHHHHHHhhCc
Confidence 567778888888887655
No 445
>PLN03205 ATR interacting protein; Provisional
Probab=21.98 E-value=2.3e+02 Score=25.82 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred ChHHHHHhhccccchhHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHHhh-----cCchhHHHHHHHHHHHhcC
Q 037142 187 ALPYLLGLLIDNHKTSIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNLLQ-----NAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 187 ~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~ 258 (383)
+++.|+.+-.-+ +..+...++++|..+.. ++....+.-.+.+++. |++++. +....||.+|+..+--+..
T Consensus 324 LlEaLLdLC~v~-n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 324 LVEPLLDLCKAE-TAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHhcC-chhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 345555555555 66666777776655432 2323333333444433 333332 3466788888887766665
Q ss_pred CCCH-HHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHH
Q 037142 259 GGTH-EQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALENIL 300 (383)
Q Consensus 259 ~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~ 300 (383)
..++ -....+-...+++.+-++|+.+ -..|++.++..|.-++
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 5432 3344444556778888888754 4578888888776554
No 446
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=21.94 E-value=3.4e+02 Score=20.09 Aligned_cols=74 Identities=22% Similarity=0.179 Sum_probs=42.1
Q ss_pred ChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc--C----CCHHHH
Q 037142 273 CIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR--H----DNYEIH 344 (383)
Q Consensus 273 ~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~--~----~~~~v~ 344 (383)
++..|-.-|.+. +......++..|..|+..++... ...+-.....++.|.+... . ....|+
T Consensus 38 Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~v-----------v~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR 106 (123)
T cd03571 38 IMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERV-----------VDDARENLYIIRTLKDFQYIDENGKDQGINVR 106 (123)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHH-----------HHHHHHhHHHHHhhccceeeCCCCCchhHHHH
Confidence 355555555443 56667778888888888766432 1122222233444443322 1 235689
Q ss_pred HHHHHHHHHhcCC
Q 037142 345 EKSAKILETYWCG 357 (383)
Q Consensus 345 ~~a~~~l~~~~~~ 357 (383)
++|..++.-+.++
T Consensus 107 ~ka~~i~~Ll~D~ 119 (123)
T cd03571 107 EKAKEILELLEDD 119 (123)
T ss_pred HHHHHHHHHhCCH
Confidence 9999888855443
No 447
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=21.68 E-value=5.7e+02 Score=22.63 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=82.4
Q ss_pred ChhhHHHHHHHHhhhhcCCCccccceecC-----------CChHHHHHhhc------cccchhHHHHHHHHHHHHhcCCH
Q 037142 157 SQSVLTQALHTVGNIARGDYSQTLYIINC-----------GALPYLLGLLI------DNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 157 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-----------~~i~~l~~ll~------~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
.-.+|.+|+.++..+..++++.+..+++. .....+...|. +. ++--.-.|+.++..+...++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 45677777777777776666544333221 01112344333 12 33233458888899989888
Q ss_pred HHHHHHHhc--C----------ChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhc
Q 037142 220 EQIQAVIDA--G----------LIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLERE-GCIKPLCDLL 281 (383)
Q Consensus 220 ~~~~~~~~~--~----------~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~ll 281 (383)
+.++.+..- + .++.+..+|.. .+++++.--...|+..... ++.-...+++. ..++.|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHh
Confidence 887777631 1 25556666643 3566666666777777766 46667777764 5889999975
Q ss_pred C-CC--CHHHHHHHHHHHHHHHHhchhc
Q 037142 282 L-CP--DPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 282 ~-~~--~~~v~~~al~~l~~l~~~~~~~ 306 (383)
. .+ ++-++--+.-.|.-+.++..++
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~~~ 236 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFSTKD 236 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S-S
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcCCC
Confidence 3 22 4445555555666666655443
No 448
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=21.24 E-value=3.3e+02 Score=19.75 Aligned_cols=102 Identities=19% Similarity=0.037 Sum_probs=59.0
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccC
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNT 309 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~ 309 (383)
+++.|+.-+.+++++|...|..+|...+.. +.....++... |.|..+- ..+.-.+..++....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~--~~~le~~v~~~--p~l~~L~--------~~g~~Ll~~~lS~~~----- 71 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED--KEYLEYLVSLR--PSLDHLG--------DIGSPLLLRFLSTPS----- 71 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--hhhHHHHHHcC--cHHHHHH--------HcCHHHHHHHHcchH-----
Confidence 467788888889999999999999999876 35566655522 2222111 112223334443222
Q ss_pred cCCCCcccHHHHHHHHhccHHHHH-HHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 310 DTDIGDVNQYAQLVEEAKGLEKIE-NLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~L~-~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
-.+.+.+.|.++.-. .=....|.+-.......+...+..
T Consensus 72 ---------Gf~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 72 ---------GFRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred ---------HHHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Confidence 233455555554443 336667777666666666555443
No 449
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.96 E-value=1e+02 Score=28.91 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=36.7
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037142 20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLLTQLNNHENLSMKRIATWTLSNL 87 (383)
Q Consensus 20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~~~~~~~~~~a~~~L~~l 87 (383)
+.+-.+....+++++.+|..++++++.+.+ .|...... ..-..+++.+ -.+.+++-+.+..++.-+
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~-~r~~~~tsp~l~~~~~~~i-~~~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLE-NRRILITSPSLRELLMRLI-VTPEPRVNKAAARALAIL 397 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheeccc-ccccccCChHHHHHHHHHh-cccccccchhhhHHHHHh
Confidence 333344445889999999999999997643 33322222 2223345555 344444444444444433
No 450
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.93 E-value=3.2e+02 Score=19.50 Aligned_cols=88 Identities=5% Similarity=0.069 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH
Q 037142 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK 151 (383)
Q Consensus 72 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~ 151 (383)
..+.+.....|++.+.. ....++..+.+.+....++-+..++..+-.++.+ ............+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~---------~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn-~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRK---------HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKN-VGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHH-cccchHHHHHHHHHHHHHH
Confidence 34556666667766652 2345777777777777777777777777777776 3333333333334566666
Q ss_pred hcCCCChhhHHHHHHHHh
Q 037142 152 LLGHPSQSVLTQALHTVG 169 (383)
Q Consensus 152 ~L~~~~~~v~~~a~~~L~ 169 (383)
.....+++++....+.+.
T Consensus 87 ~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 87 AYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 666777777776666553
No 451
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.84 E-value=5.1e+02 Score=24.00 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=28.8
Q ss_pred HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
|.++.--..|.+|+.+.+++-.+.|-++|..+...+++
T Consensus 169 FddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~ 206 (594)
T KOG1086|consen 169 FDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEH 206 (594)
T ss_pred cCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 44444446677889998888888898999888887764
No 452
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.65 E-value=5.1e+02 Score=21.74 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=45.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 280 LLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 280 ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
+++++++.+.+.++.+..++....-..-.. ..+....+..+. .....+.++.++.++.|+-.|.+.++.....
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~---~~~~~~~W~~~~--~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICV---NPSDEQLWESMN--ELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHH--HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 467788889888888887776542211100 111223333332 3456777889999999999999888776543
No 453
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.46 E-value=2.8e+02 Score=24.15 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCChHHHHHhhccccchhHHHHHHHHHHHHhcCC--------------HHHHHHHHhcCChHHHHHHhh
Q 037142 185 CGALPYLLGLLIDNHKTSIKNYACWIISNITAGN--------------REQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 185 ~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~--------------~~~~~~~~~~~~l~~L~~ll~ 239 (383)
...+..++.-|.+. +...|..|+++|.-++.|. ..+...+.+.|+++.+..++.
T Consensus 59 ~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35677788888887 8888889999998887653 123344457888999988886
No 454
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=20.44 E-value=3.9e+02 Score=20.29 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=60.7
Q ss_pred HhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142 237 LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDV 316 (383)
Q Consensus 237 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 316 (383)
-|......+++.|-++|-+ .. .+..+.+.+++-++.++-..+....+.+..++..+...+. ..
T Consensus 16 ~L~aS~qSi~kaa~fAlk~--~~---------~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~------~~ 78 (139)
T PF12243_consen 16 RLNASQQSIQKAAQFALKN--RD---------MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK------YN 78 (139)
T ss_pred HcchhHHHHHHHHHHHHHc--cc---------cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc------cc
Confidence 3444556788888888877 22 1233677888888888888888888888888876665431 23
Q ss_pred cHHHHHHHHhccHHHHHHH-hcCCCH--HHHHHHHHHHHHhc
Q 037142 317 NQYAQLVEEAKGLEKIENL-QRHDNY--EIHEKSAKILETYW 355 (383)
Q Consensus 317 ~~~~~~l~~~~~~~~L~~l-~~~~~~--~v~~~a~~~l~~~~ 355 (383)
..|..+++. . ++++.+. .-.++. .-...+.++|..+-
T Consensus 79 ~~Yv~~l~~-d-L~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 79 YPYVSMLQR-D-LPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred chhHHHHHH-H-HHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 456676643 2 3444443 333332 23455566666543
No 455
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.06 E-value=6e+02 Score=22.31 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=39.0
Q ss_pred hHHHHHHhcCC-----CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc------cCC----HHHHHHHHHHH
Q 037142 61 LIPLLTQLNNH-----ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH------SND----EHVMSNACWGL 125 (383)
Q Consensus 61 i~~L~~~L~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~------~~~----~~~~~~~~~~l 125 (383)
+|.+++++... .+-......+...+.+..+...........++|.++.++- .++ ..+|.-|+..+
T Consensus 232 vPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll 311 (450)
T COG5095 232 VPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLL 311 (450)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 56666666311 2334444455555666655433333344566666665542 221 34777788888
Q ss_pred HHhccC
Q 037142 126 SLLCDG 131 (383)
Q Consensus 126 ~~l~~~ 131 (383)
...+..
T Consensus 312 ~yV~~~ 317 (450)
T COG5095 312 KYVFSN 317 (450)
T ss_pred HHHHhh
Confidence 777766
Done!