Query 037142
Match_columns 383
No_of_seqs 261 out of 2033
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 15:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 6.5E-48 2.2E-52 359.9 35.3 351 1-360 127-482 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.1E-47 3.7E-52 360.4 36.1 351 1-360 146-501 (529)
3 4b8j_A Importin subunit alpha- 100.0 4.3E-42 1.5E-46 323.4 36.9 362 1-365 144-505 (528)
4 2jdq_A Importin alpha-1 subuni 100.0 1.8E-41 6.2E-46 313.2 35.4 357 1-361 91-448 (450)
5 1wa5_B Importin alpha subunit; 100.0 5.1E-41 1.8E-45 316.0 37.0 356 1-361 157-515 (530)
6 3ul1_B Importin subunit alpha- 100.0 3.4E-40 1.2E-44 307.8 28.1 334 8-357 91-431 (510)
7 3tpo_A Importin subunit alpha- 100.0 1.8E-39 6.1E-44 304.6 30.2 335 6-356 108-449 (529)
8 1xm9_A Plakophilin 1; armadill 100.0 8.8E-39 3E-43 293.8 28.7 342 1-361 28-454 (457)
9 4b8j_A Importin subunit alpha- 100.0 4.4E-37 1.5E-41 289.3 29.8 334 8-358 108-445 (528)
10 1wa5_B Importin alpha subunit; 100.0 3.5E-36 1.2E-40 283.1 32.7 338 7-358 120-459 (530)
11 3nmz_A APC variant protein; pr 100.0 7.1E-37 2.4E-41 276.6 22.4 340 5-358 58-452 (458)
12 3now_A UNC-45 protein, SD10334 100.0 1.8E-36 6.3E-41 288.7 22.7 343 4-364 407-790 (810)
13 3l6x_A Catenin delta-1; cateni 100.0 9.2E-36 3.1E-40 275.1 26.7 341 1-359 74-479 (584)
14 3now_A UNC-45 protein, SD10334 100.0 1.3E-35 4.3E-40 283.0 23.5 362 2-382 274-689 (810)
15 3nmz_A APC variant protein; pr 100.0 3E-35 1E-39 266.0 19.0 300 1-303 108-452 (458)
16 2jdq_A Importin alpha-1 subuni 100.0 1.4E-33 4.8E-38 260.3 28.6 331 11-358 57-392 (450)
17 1jdh_A Beta-catenin; beta-cate 100.0 2E-32 6.9E-37 257.8 29.4 332 1-354 169-528 (529)
18 3nmw_A APC variant protein; AR 100.0 7.4E-33 2.5E-37 243.5 22.9 273 30-305 45-338 (354)
19 1xm9_A Plakophilin 1; armadill 100.0 1.7E-33 5.9E-38 258.6 19.3 343 18-380 3-442 (457)
20 2z6h_A Catenin beta-1, beta-ca 100.0 9.4E-32 3.2E-36 258.4 29.0 335 1-357 166-528 (644)
21 3l6x_A Catenin delta-1; cateni 100.0 1.6E-32 5.3E-37 253.6 19.1 347 15-380 46-469 (584)
22 1jdh_A Beta-catenin; beta-cate 100.0 9.3E-33 3.2E-37 260.1 16.7 375 2-382 128-525 (529)
23 2z6g_A B-catenin; FULL-length, 100.0 1.4E-29 4.9E-34 246.9 32.7 336 2-359 303-666 (780)
24 2z6h_A Catenin beta-1, beta-ca 100.0 2.8E-31 9.5E-36 255.1 20.4 362 1-382 124-522 (644)
25 3nmw_A APC variant protein; AR 100.0 2.9E-31 9.9E-36 233.3 17.3 254 5-261 61-337 (354)
26 2z6g_A B-catenin; FULL-length, 100.0 1.7E-30 5.7E-35 253.5 19.6 362 1-382 260-658 (780)
27 4hxt_A De novo protein OR329; 100.0 2.7E-29 9.2E-34 213.3 22.1 241 17-260 2-243 (252)
28 4db8_A Armadillo-repeat protei 100.0 4.2E-29 1.4E-33 212.2 18.8 239 17-258 12-251 (252)
29 4hxt_A De novo protein OR329; 100.0 3.6E-28 1.2E-32 206.4 22.9 244 59-306 2-246 (252)
30 4db8_A Armadillo-repeat protei 100.0 1.2E-27 4.1E-32 203.2 18.2 239 59-301 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 100.0 5.8E-27 2E-31 200.6 19.3 235 115-359 54-290 (296)
32 4db6_A Armadillo repeat protei 99.9 6E-25 2.1E-29 181.1 20.2 200 99-301 10-209 (210)
33 4db6_A Armadillo repeat protei 99.9 1.3E-24 4.6E-29 179.0 18.4 200 14-216 9-209 (210)
34 3opb_A SWI5-dependent HO expre 99.9 3.1E-23 1.1E-27 194.4 24.2 322 18-356 335-728 (778)
35 3opb_A SWI5-dependent HO expre 99.9 9.3E-22 3.2E-26 184.5 23.9 354 12-382 250-678 (778)
36 1xqr_A HSPBP1 protein; armadil 99.9 1.4E-22 4.9E-27 173.4 16.9 170 6-176 70-241 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 5E-21 1.7E-25 156.8 14.1 196 18-217 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 6.6E-20 2.3E-24 150.1 11.8 197 100-301 7-229 (233)
39 1oyz_A Hypothetical protein YI 99.7 4.7E-16 1.6E-20 133.7 23.0 259 12-352 18-278 (280)
40 4fdd_A Transportin-1; heat rep 99.7 4.3E-16 1.5E-20 154.6 19.2 319 17-359 128-474 (852)
41 3grl_A General vesicular trans 99.7 4.1E-15 1.4E-19 136.3 23.9 330 18-359 22-397 (651)
42 1b3u_A Protein (protein phosph 99.7 2E-15 7E-20 143.5 22.5 306 16-355 280-586 (588)
43 4fdd_A Transportin-1; heat rep 99.7 2.3E-16 7.9E-21 156.5 13.7 277 18-306 175-476 (852)
44 3grl_A General vesicular trans 99.7 3.6E-15 1.2E-19 136.6 19.6 288 14-305 57-398 (651)
45 1b3u_A Protein (protein phosph 99.7 3.6E-15 1.2E-19 141.9 19.5 306 17-357 242-549 (588)
46 2vgl_B AP-2 complex subunit be 99.7 2.9E-15 9.8E-20 142.1 17.1 263 18-304 50-314 (591)
47 2vgl_B AP-2 complex subunit be 99.6 1E-14 3.5E-19 138.3 15.5 257 19-302 123-383 (591)
48 3ltm_A Alpha-REP4; protein eng 99.6 8.2E-14 2.8E-18 114.3 18.1 188 16-260 18-205 (211)
49 1w63_A Adapter-related protein 99.6 1E-13 3.5E-18 131.9 21.2 291 19-359 72-382 (618)
50 3ltj_A Alpharep-4; protein eng 99.6 2.5E-13 8.4E-18 110.5 19.2 185 17-258 14-198 (201)
51 1oyz_A Hypothetical protein YI 99.6 1.3E-13 4.4E-18 118.4 17.4 229 57-356 21-250 (280)
52 3ltm_A Alpha-REP4; protein eng 99.5 3.8E-13 1.3E-17 110.3 17.1 189 58-304 18-206 (211)
53 2bpt_A Importin beta-1 subunit 99.5 1.6E-13 5.4E-18 136.5 15.8 316 18-355 370-710 (861)
54 3ltj_A Alpharep-4; protein eng 99.5 8.8E-13 3E-17 107.2 17.2 184 59-300 14-197 (201)
55 1ibr_B P95, importin beta-1 su 99.5 2.8E-13 9.7E-18 124.8 15.7 315 19-359 92-440 (462)
56 1ibr_B P95, importin beta-1 su 99.5 1.5E-13 5.3E-18 126.6 12.5 282 17-305 128-441 (462)
57 1w63_A Adapter-related protein 99.5 1.3E-12 4.3E-17 124.4 18.1 257 18-303 108-416 (618)
58 1qgr_A Protein (importin beta 99.5 8.4E-12 2.9E-16 124.3 23.2 321 17-357 128-480 (876)
59 2bpt_A Importin beta-1 subunit 99.4 5.3E-12 1.8E-16 125.5 19.4 275 17-305 411-715 (861)
60 1qgr_A Protein (importin beta 99.4 1.7E-11 5.9E-16 122.0 22.6 276 17-304 172-482 (876)
61 2vgl_A Adaptor protein complex 99.4 2E-10 6.8E-15 109.0 24.8 296 18-359 75-401 (621)
62 1u6g_C TIP120 protein, CAND1; 99.3 7.6E-11 2.6E-15 121.5 16.7 311 17-356 48-403 (1230)
63 1u6g_C TIP120 protein, CAND1; 99.3 2.5E-10 8.6E-15 117.7 19.7 330 16-358 254-681 (1230)
64 2db0_A 253AA long hypothetical 99.2 2.9E-09 1E-13 80.6 19.5 218 14-258 29-246 (253)
65 3tjz_B Coatomer subunit gamma; 99.2 9.2E-11 3.2E-15 101.8 12.9 274 21-351 72-348 (355)
66 4gmo_A Putative uncharacterize 99.2 6.2E-11 2.1E-15 113.9 9.0 200 12-215 30-257 (684)
67 2db0_A 253AA long hypothetical 99.1 1.7E-08 5.8E-13 76.5 19.4 217 57-302 30-247 (253)
68 3b2a_A TON_1937, putative unch 99.1 2.1E-09 7.3E-14 85.0 15.2 225 100-353 32-258 (265)
69 4gmo_A Putative uncharacterize 99.1 9E-11 3.1E-15 112.8 8.9 197 60-257 35-257 (684)
70 2vgl_A Adaptor protein complex 99.1 8.6E-09 2.9E-13 97.9 22.1 260 19-302 113-399 (621)
71 2qk2_A LP04448P; mini spindles 99.0 1.9E-09 6.5E-14 90.1 12.0 186 62-259 18-206 (242)
72 1ho8_A Vacuolar ATP synthase s 99.0 6.6E-08 2.3E-12 85.9 22.1 323 14-355 74-475 (480)
73 3b2a_A TON_1937, putative unch 99.0 7.3E-08 2.5E-12 76.3 19.7 201 16-238 32-233 (265)
74 2qk1_A Protein STU2; STU2P, XM 98.9 1.5E-08 5.3E-13 84.5 13.8 192 64-259 21-221 (249)
75 2qk2_A LP04448P; mini spindles 98.9 1.7E-09 5.7E-14 90.4 7.5 187 19-216 17-205 (242)
76 4ady_A RPN2, 26S proteasome re 98.8 1.2E-06 4.2E-11 84.7 24.2 274 18-361 393-681 (963)
77 3tjz_B Coatomer subunit gamma; 98.8 4.4E-08 1.5E-12 85.1 12.6 238 18-294 105-346 (355)
78 1te4_A Conserved protein MTH18 98.8 1.5E-09 5E-14 81.3 2.4 122 15-171 10-131 (131)
79 2qk1_A Protein STU2; STU2P, XM 98.8 8.6E-09 2.9E-13 86.1 7.1 193 21-216 20-220 (249)
80 4ady_A RPN2, 26S proteasome re 98.7 7.3E-07 2.5E-11 86.3 17.6 204 19-261 474-679 (963)
81 1te4_A Conserved protein MTH18 98.6 5.1E-09 1.8E-13 78.3 0.0 121 100-256 11-131 (131)
82 3dad_A FH1/FH2 domain-containi 98.4 3.1E-06 1E-10 71.6 12.5 189 147-345 121-325 (339)
83 3dad_A FH1/FH2 domain-containi 98.3 1.3E-05 4.4E-10 67.9 12.2 187 103-291 120-326 (339)
84 1ho8_A Vacuolar ATP synthase s 98.2 8.8E-06 3E-10 72.4 10.2 209 6-216 198-476 (480)
85 2iw3_A Elongation factor 3A; a 98.1 0.0003 1E-08 69.1 20.7 265 17-304 54-327 (986)
86 1upk_A MO25 protein; transfera 98.1 0.0005 1.7E-08 58.2 18.1 228 51-284 70-313 (341)
87 2iw3_A Elongation factor 3A; a 98.1 0.00014 4.7E-09 71.5 17.0 220 17-256 95-322 (986)
88 1wa5_C Importin alpha RE-expor 98.1 7.5E-05 2.6E-09 75.0 15.8 223 28-258 416-670 (960)
89 1wa5_C Importin alpha RE-expor 97.9 0.00076 2.6E-08 67.7 20.1 261 32-303 376-672 (960)
90 2x1g_F Cadmus; transport prote 97.9 3.6E-05 1.2E-09 77.5 10.2 259 29-304 476-763 (971)
91 4hat_C Exportin-1; heat repeat 97.9 0.0014 4.6E-08 65.8 20.9 279 11-305 229-573 (1023)
92 2x1g_F Cadmus; transport prote 97.8 0.0011 3.9E-08 66.6 19.7 252 32-303 311-617 (971)
93 4ffb_C Protein STU2; tubulin f 97.8 0.00083 2.8E-08 56.9 14.6 187 64-260 14-214 (278)
94 3m1i_C Exportin-1; heat repeat 97.7 0.0043 1.5E-07 62.9 22.0 101 200-305 466-573 (1049)
95 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00012 4E-09 66.0 9.1 244 18-296 175-431 (800)
96 2of3_A ZYG-9; multifunctional 97.7 0.00027 9.2E-09 58.5 10.6 184 104-303 49-238 (266)
97 2x19_B Importin-13; nuclear tr 97.7 0.0029 1E-07 63.5 20.0 146 146-303 447-601 (963)
98 2of3_A ZYG-9; multifunctional 97.6 0.0048 1.6E-07 51.1 16.8 182 16-216 45-236 (266)
99 2x19_B Importin-13; nuclear tr 97.5 0.018 6.2E-07 57.8 23.1 225 71-304 460-717 (963)
100 2fv2_A RCD1 required for cell 97.5 0.0018 6.2E-08 52.3 12.2 163 205-373 74-246 (268)
101 4hat_C Exportin-1; heat repeat 97.5 0.007 2.4E-07 60.7 19.2 145 29-176 465-621 (1023)
102 3c2g_A SYS-1 protein; beta-cat 97.5 0.028 9.5E-07 47.7 19.0 300 33-354 259-616 (619)
103 4ffb_C Protein STU2; tubulin f 97.4 0.0049 1.7E-07 52.0 15.1 190 149-357 14-213 (278)
104 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0031 1.1E-07 57.1 12.8 188 31-253 242-431 (800)
105 3ibv_A Exportin-T; karyopherin 97.3 0.0011 3.7E-08 66.3 11.0 278 11-305 227-570 (980)
106 1lrv_A LRV, leucine-rich repea 97.3 0.00037 1.3E-08 57.3 6.0 18 23-40 56-73 (244)
107 1upk_A MO25 protein; transfera 97.3 0.021 7.2E-07 48.4 16.5 208 138-360 72-287 (341)
108 3u0r_A Apoptosis inhibitor 5; 97.3 0.021 7.3E-07 50.8 16.8 248 29-304 40-301 (507)
109 3m1i_C Exportin-1; heat repeat 97.1 0.015 5.3E-07 58.9 17.3 232 60-304 345-621 (1049)
110 2fv2_A RCD1 required for cell 97.0 0.032 1.1E-06 45.2 14.5 138 162-302 74-225 (268)
111 3u0r_A Apoptosis inhibitor 5; 96.8 0.078 2.7E-06 47.3 16.5 123 72-215 40-162 (507)
112 2f31_A Diaphanous protein homo 96.8 0.026 8.8E-07 46.1 12.6 156 185-348 42-220 (233)
113 3gjx_A Exportin-1; transport, 96.8 0.042 1.4E-06 55.2 16.2 102 200-306 492-600 (1073)
114 3gjx_A Exportin-1; transport, 96.7 0.049 1.7E-06 54.7 16.2 295 19-350 30-374 (1073)
115 3c2g_A SYS-1 protein; beta-cat 96.6 0.086 3E-06 44.8 14.6 173 126-301 267-473 (619)
116 1lrv_A LRV, leucine-rich repea 96.5 0.0036 1.2E-07 51.4 5.8 84 4-123 61-144 (244)
117 3ibv_A Exportin-T; karyopherin 96.5 0.65 2.2E-05 46.5 22.7 218 66-304 14-263 (980)
118 3l9t_A Putative uncharacterize 96.3 0.094 3.2E-06 42.1 12.4 142 63-227 74-218 (240)
119 3eg5_B Protein diaphanous homo 96.0 0.067 2.3E-06 47.1 11.2 140 200-347 133-285 (383)
120 3l9t_A Putative uncharacterize 95.9 0.1 3.5E-06 41.9 10.8 145 18-183 72-217 (240)
121 2bnx_A Diaphanous protein homo 95.5 0.38 1.3E-05 42.4 14.1 140 200-347 71-223 (386)
122 3a6p_A Exportin-5; exportin-5, 94.6 1.3 4.3E-05 45.7 16.9 312 20-358 15-382 (1204)
123 3ebb_A Phospholipase A2-activa 94.5 0.33 1.1E-05 41.2 10.4 136 102-239 148-286 (304)
124 3ebb_A Phospholipase A2-activa 94.3 1.2 4.1E-05 37.7 13.5 129 23-155 153-287 (304)
125 3eg5_B Protein diaphanous homo 94.3 0.76 2.6E-05 40.4 12.7 125 5-131 98-247 (383)
126 1lsh_A Lipovitellin (LV-1N, LV 94.3 0.72 2.5E-05 46.6 14.1 135 102-256 392-541 (1056)
127 1lsh_A Lipovitellin (LV-1N, LV 94.3 1.8 6.3E-05 43.7 17.0 172 61-262 393-580 (1056)
128 3fga_B Serine/threonine-protei 94.1 0.62 2.1E-05 40.8 11.4 238 7-259 119-367 (403)
129 3a6p_A Exportin-5; exportin-5, 94.0 2.1 7.3E-05 44.0 17.1 268 17-300 45-379 (1204)
130 2f31_A Diaphanous protein homo 93.9 0.47 1.6E-05 38.5 10.0 125 5-131 32-181 (233)
131 2npp_B PP2A, B subunit, serine 92.3 1.4 4.9E-05 39.3 11.1 234 11-259 156-400 (449)
132 1vdy_A Hypothetical protein (R 92.3 0.34 1.2E-05 35.5 6.0 78 273-362 50-136 (140)
133 3ldz_A STAM-1, signal transduc 91.9 0.29 1E-05 36.1 5.4 74 231-304 44-117 (140)
134 3gs3_A Symplekin, LD45768P; he 91.8 4.2 0.00014 33.3 12.8 153 18-176 54-246 (257)
135 2bnx_A Diaphanous protein homo 91.8 4.2 0.00014 35.8 13.6 152 5-160 36-219 (386)
136 1x5b_A Signal transducing adap 91.4 0.54 1.8E-05 35.7 6.5 78 273-362 53-131 (163)
137 3ldz_A STAM-1, signal transduc 90.8 0.42 1.4E-05 35.2 5.3 75 273-359 43-117 (140)
138 3qml_C Protein SLS1, nucleotid 90.6 0.96 3.3E-05 37.8 7.7 137 157-301 41-189 (315)
139 3g2s_A C-terminal fragment of 90.5 0.66 2.3E-05 34.5 6.1 74 231-304 50-129 (149)
140 3fga_B Serine/threonine-protei 90.4 6.9 0.00024 34.3 13.3 238 49-305 119-370 (403)
141 1mhq_A ADP-ribosylation factor 89.9 1.4 4.6E-05 32.8 7.4 76 273-360 39-120 (148)
142 1juq_A ADP-ribosylation factor 89.8 1.4 4.9E-05 33.6 7.7 75 273-359 51-131 (171)
143 3o2t_A Symplekin; heat repeat, 89.6 9.9 0.00034 33.2 13.9 129 159-301 40-183 (386)
144 2npp_B PP2A, B subunit, serine 89.6 4.1 0.00014 36.4 11.4 233 53-304 156-402 (449)
145 3g2s_A C-terminal fragment of 89.5 1.4 4.9E-05 32.7 7.3 75 273-359 49-129 (149)
146 1x5b_A Signal transducing adap 89.4 0.76 2.6E-05 34.8 5.8 72 231-302 54-126 (163)
147 3o2t_A Symplekin; heat repeat, 89.4 2.5 8.5E-05 37.0 9.8 137 203-355 41-182 (386)
148 1mhq_A ADP-ribosylation factor 89.3 1.4 4.7E-05 32.8 7.0 73 231-303 40-118 (148)
149 3qml_C Protein SLS1, nucleotid 88.6 2.3 7.8E-05 35.6 8.5 150 100-257 21-188 (315)
150 3gs3_A Symplekin, LD45768P; he 88.4 9.4 0.00032 31.3 13.8 138 202-355 30-172 (257)
151 1juq_A ADP-ribosylation factor 86.6 1.5 5.1E-05 33.5 5.9 72 231-302 52-129 (171)
152 1vsy_5 Proteasome activator BL 85.2 5.7 0.0002 39.7 10.8 186 19-215 135-364 (997)
153 1vsy_5 Proteasome activator BL 83.2 40 0.0014 33.8 16.5 275 65-358 513-875 (997)
154 2jak_A Serine/threonine-protei 82.9 1.6 5.5E-05 38.1 5.1 82 9-91 166-247 (392)
155 1dvp_A HRS, hepatocyte growth 82.0 3.3 0.00011 33.2 6.4 75 273-359 43-118 (220)
156 3zyq_A Hepatocyte growth facto 81.8 2.6 9.1E-05 33.8 5.8 74 273-358 46-120 (226)
157 1elk_A Target of MYB1; superhe 80.8 6.2 0.00021 29.5 7.1 75 273-359 54-133 (157)
158 3zyq_A Hepatocyte growth facto 79.9 2.7 9.3E-05 33.8 5.2 74 231-304 47-121 (226)
159 3gae_A Protein DOA1; UFD3, CDC 74.5 18 0.00063 29.5 8.8 133 160-304 70-220 (253)
160 1elk_A Target of MYB1; superhe 73.1 8.8 0.0003 28.7 6.1 72 231-302 55-131 (157)
161 3ut4_A CTHE_2751, putative unc 71.4 5 0.00017 28.9 4.1 96 230-358 32-132 (134)
162 2jak_A Serine/threonine-protei 70.7 12 0.00041 32.7 7.1 190 52-253 167-362 (392)
163 1dvp_A HRS, hepatocyte growth 68.1 6 0.0002 31.6 4.4 71 18-88 43-114 (220)
164 3gae_A Protein DOA1; UFD3, CDC 67.5 14 0.0005 30.1 6.7 105 27-131 100-218 (253)
165 3pst_A Protein DOA1; protein d 63.2 20 0.00069 31.7 7.0 102 26-131 271-390 (425)
166 2xpp_A IWS1, ECU08_0440; trans 60.2 26 0.00089 25.7 6.1 76 7-87 51-134 (145)
167 3l3f_X Protein DOA1, DOA1/UFD3 59.3 20 0.00068 31.0 6.2 101 27-131 209-327 (362)
168 3rru_A TOM1L1 protein; structu 59.2 25 0.00086 26.0 6.0 78 273-362 54-136 (152)
169 3l3f_X Protein DOA1, DOA1/UFD3 57.1 65 0.0022 27.8 9.0 131 161-303 180-328 (362)
170 3pst_A Protein DOA1; protein d 55.0 88 0.003 27.7 9.6 136 77-222 243-395 (425)
171 1vdy_A Hypothetical protein (R 54.0 49 0.0017 24.1 6.7 71 230-300 50-129 (140)
172 3rru_A TOM1L1 protein; structu 52.9 25 0.00087 26.0 5.2 74 231-304 55-133 (152)
173 4atg_A TAF6; transcription, TF 49.8 51 0.0017 25.6 6.6 130 100-239 39-178 (196)
174 3nfq_A Transcription factor IW 47.9 66 0.0022 24.3 6.7 79 7-90 66-152 (170)
175 2b6c_A Hypothetical protein EF 43.5 1.2E+02 0.0041 23.9 9.2 71 63-141 128-198 (220)
176 2b6c_A Hypothetical protein EF 40.8 1.3E+02 0.0045 23.6 10.2 140 104-270 58-199 (220)
177 2xpp_A IWS1, ECU08_0440; trans 39.1 1.1E+02 0.0038 22.3 7.3 76 220-300 52-135 (145)
178 4atg_A TAF6; transcription, TF 35.4 1.5E+02 0.0053 22.9 9.3 111 59-171 40-160 (196)
179 1w9c_A CRM1 protein, exportin 34.5 2.1E+02 0.0072 24.2 11.9 160 75-238 44-221 (321)
180 1vsy_4 Proteasome activator BL 31.0 2E+02 0.0067 28.0 8.8 123 6-130 329-455 (799)
181 3nfq_A Transcription factor IW 30.6 1.7E+02 0.0059 22.0 6.8 77 220-301 67-151 (170)
182 3jxy_A Alkylpurine DNA glycosy 27.3 95 0.0033 24.7 5.2 77 145-229 132-208 (232)
183 3jxy_A Alkylpurine DNA glycosy 26.7 2.4E+02 0.0081 22.3 11.0 141 104-271 64-207 (232)
184 1wjt_A Transcription elongatio 24.4 88 0.003 21.3 3.7 39 320-358 47-86 (103)
185 4flb_A Regulation of nuclear P 20.9 89 0.003 22.2 3.5 63 102-175 9-71 (132)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.5e-48 Score=359.86 Aligned_cols=351 Identities=46% Similarity=0.736 Sum_probs=322.8
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC----ChhH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE----NLSM 76 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~----~~~~ 76 (383)
|+|+++++++..+++.|++|.|+++|.++++++++.|+|+|+|++.++++.+..+.+.|+++.|+.++.... ...+
T Consensus 127 nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~ 206 (510)
T 3ul1_B 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 206 (510)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHH
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999999994321 2357
Q ss_pred HHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142 77 KRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH 155 (383)
Q Consensus 77 ~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~ 155 (383)
.+.++|++.+++.+. +........+++|.|.+++.+++++++..++|+|.+++.. +.+....+.+.|+++.|+.+|.+
T Consensus 207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcC
Confidence 889999999999987 5556666789999999999999999999999999999998 77778888899999999999999
Q ss_pred CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142 156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235 (383)
Q Consensus 156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~ 235 (383)
++..++..++++|++++.+++.....+++.|+++.|..++.++ ++.+++.++|+|+|++.+++.....+++.|+++.|+
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv 364 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999888888899999999999999998 999999999999999999999999999999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc
Q 037142 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD 315 (383)
Q Consensus 236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 315 (383)
.++.+++.++|++|+|+|+|++..++.+++.++++.|++++|+++|+++|++++..++++|.+++..+++.. .
T Consensus 365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~ 437 (510)
T 3ul1_B 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------E 437 (510)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------C
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------c
Confidence 999999999999999999999988888999999999999999999999999999999999999998876543 3
Q ss_pred ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 316 VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 316 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
.+.+..+|+++||+++|+.|++|++++|+++|..+|++||.++++
T Consensus 438 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 567899999999999999999999999999999999999987654
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.1e-47 Score=360.42 Aligned_cols=351 Identities=46% Similarity=0.730 Sum_probs=322.8
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC----ChhH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE----NLSM 76 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~----~~~~ 76 (383)
|+|+++++++..+++.|++|.|+++|.++++++++.|+|+|+|++.++++++..+.+.|++++|+.+|.... ...+
T Consensus 146 nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999995322 2357
Q ss_pred HHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142 77 KRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH 155 (383)
Q Consensus 77 ~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~ 155 (383)
.+.++|++++++.+. +........+++|.|.+++.+++++++..++|+|.+++.+ +.+....+...|+++.|+.+|.+
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~ 304 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGA 304 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcC
Confidence 889999999999987 5556666789999999999999999999999999999998 77778888899999999999999
Q ss_pred CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142 156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235 (383)
Q Consensus 156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~ 235 (383)
+++.++..++++|++++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 9999999999999999999888888899999999999999998 999999999999999999999999999999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc
Q 037142 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD 315 (383)
Q Consensus 236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 315 (383)
.++.+++.+++++|+|+|+|++..++++++..+++.|++++|+++|.++|++++..++++|.+++..+++.. .
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~ 456 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------E 456 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------C
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------C
Confidence 999999999999999999999988788999999999999999999999999999999999999998776532 3
Q ss_pred ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 316 VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 316 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
.+.+..+|+++||+++|+.|++|++++|+++|..+|++||.++++
T Consensus 457 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 457 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp HHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 567899999999999999999999999999999999999987654
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.3e-42 Score=323.40 Aligned_cols=362 Identities=68% Similarity=1.065 Sum_probs=325.1
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+++++++++..+++.|+++.|+++|.+++++++..|+|+|++++.+++..+..+.+.|+++.|+.++.++.+..++..+
T Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHH
T ss_pred HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHH
Confidence 46778899999999999999999999999999999999999999999899999999999999999999667789999999
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV 160 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v 160 (383)
+|+|++++...+........+++|.|.+++.+++++++..++++|.+++.. .+.....+.+.|+++.|+.+|.++++.+
T Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~v 302 (528)
T 4b8j_A 224 TWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSV 302 (528)
T ss_dssp HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCCChhH
Confidence 999999999876677777799999999999999999999999999999988 6777788889999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
+..++++|++++.+++...+.+++.|+++.|+.++.++.++.++..|+|+|+|++.+++.....+++.++++.|+.++.+
T Consensus 303 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~ 382 (528)
T 4b8j_A 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 382 (528)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 99999999999998887888888999999999999876578999999999999999988888999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA 320 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 320 (383)
+++.++..|+|+|+|++..++++...++.+.|+++.|++++.+++++++..++++|.+++..++...... ....+.+.
T Consensus 383 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~--~~~~~~~~ 460 (528)
T 4b8j_A 383 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLA--AGDVNVFS 460 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcc--cccccHHH
Confidence 9999999999999999987778999999999999999999999999999999999999998776532210 01345789
Q ss_pred HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCcc
Q 037142 321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPG 365 (383)
Q Consensus 321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 365 (383)
.++.++|+++.|..+++|++++++++|..++++||..++++.+..
T Consensus 461 ~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~ 505 (528)
T 4b8j_A 461 QMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGA 505 (528)
T ss_dssp HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 999999999999999999999999999999999999877655544
No 4
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.8e-41 Score=313.17 Aligned_cols=357 Identities=53% Similarity=0.829 Sum_probs=320.9
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+++++++....+++.|+++.|+++|++++++++..|+++|++++.++++.+..+.+.|+++.|++++.++.+..++..+
T Consensus 91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a 170 (450)
T 2jdq_A 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA 170 (450)
T ss_dssp HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHH
T ss_pred HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHH
Confidence 35667788888999999999999999999999999999999999999889999999999999999999545789999999
Q ss_pred HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142 81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS 159 (383)
Q Consensus 81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 159 (383)
+|+|++++.+. +........+++|.+.+++.++++.++..++|+|.+++.. .++....+...|+++.++.++.++++.
T Consensus 171 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~ 249 (450)
T 2jdq_A 171 VWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYK 249 (450)
T ss_dssp HHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTTHHHHHHHTTCSCHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-CcHHHHHHHHcCcHHHHHHHHCCCchh
Confidence 99999999876 5555566699999999999999999999999999999987 667777888889999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
++..++++|++++.+.+...+.+.+.|+++.++.++.++ ++.++..++++|+|++.+++...+.+++.++++.|+.++.
T Consensus 250 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 328 (450)
T 2jdq_A 250 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328 (450)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 999999999999988877777778889999999999998 9999999999999999988888888889999999999999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY 319 (383)
Q Consensus 240 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 319 (383)
++++.+|..|+|+|+|++...+++..+.+.+.|+++.|++++++++++++..++++|.+++..++..+.. .....+.+
T Consensus 329 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--~~~~~~~~ 406 (450)
T 2jdq_A 329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR--NGTGINPY 406 (450)
T ss_dssp HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH--SCSCCCHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc--cccchhHH
Confidence 9999999999999999997656788888889999999999999999999999999999999877653210 01134578
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142 320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG 361 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 361 (383)
...|.+.|+++.|..+++++++++++.|..++.+||++++++
T Consensus 407 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 407 CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999999999999999877653
No 5
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.1e-41 Score=316.03 Aligned_cols=356 Identities=51% Similarity=0.774 Sum_probs=322.9
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+++++++.+..+++.|+++.|+++|.+++++++..|+|+|++++.+++..+..+...|+++.|+.++ .+.+..++..+
T Consensus 157 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a 235 (530)
T 1wa5_B 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTA 235 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHH
Confidence 46777889999999999999999999999999999999999999998889999999999999999999 56889999999
Q ss_pred HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142 81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS 159 (383)
Q Consensus 81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~ 159 (383)
+|+|++++.+. +........+++|.|+.++.++++.++..++|+|.+++.. .++....+.+.|+++.|+.+|.++++.
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~ 314 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTL 314 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHhcCcHHHHHHHHCCCChh
Confidence 99999999887 6666677799999999999999999999999999999987 667778888889999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
++..++++|++++.+++...+.+++.|+++.++.++.++ ++.++..|+++|+|++.+++...+.+++.++++.|+.++.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 999999999999988877777788899999999999998 9999999999999999988888888899999999999999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCH--HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCccc
Q 037142 240 NAVFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVN 317 (383)
Q Consensus 240 ~~~~~v~~~a~~~l~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 317 (383)
++++.++..|+|+|++++..+++ +..+.+.+.|+++.|+.++.+++++++..++++|.+++..++..... .....+
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~--~~~~~~ 471 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA--RGLNIN 471 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HTCSSC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc--cccccc
Confidence 99999999999999999986555 78888899999999999999999999999999999999877653210 001245
Q ss_pred HHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142 318 QYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG 361 (383)
Q Consensus 318 ~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 361 (383)
.++..+.+.|+++.|..|+++++++|++.|..+|.+||..++++
T Consensus 472 ~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 68899999999999999999999999999999999999987764
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.4e-40 Score=307.81 Aligned_cols=334 Identities=25% Similarity=0.362 Sum_probs=298.3
Q ss_pred HHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 8 EDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 8 ~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
.....+++.|++|.|+++|++ .++++|..|+|+|+|+++++++.+..+++.|+++.|+++| ++++..+++.|+|+|+|
T Consensus 91 ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~aL~n 169 (510)
T 3ul1_B 91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGN 169 (510)
T ss_dssp CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 346789999999999999985 6689999999999999999999999999999999999999 78899999999999999
Q ss_pred hcCCCCC-CChhhhhchhHHHHHhhccCC-----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142 87 LCGGKPR-PIFDQVRPCLPTLAQLVHSND-----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV 160 (383)
Q Consensus 87 l~~~~~~-~~~~~~~~~i~~l~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v 160 (383)
|+.+.+. +......|+++.++.++...+ ..+++.++|++.+++.+ ...........+++|.|+.++.++++++
T Consensus 170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~lp~L~~LL~~~~~~v 248 (510)
T 3ul1_B 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN-KNPAPPLDAVEQILPTLVRLLHHNDPEV 248 (510)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC-CSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc-ccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence 9998744 344556899999999998654 45788999999999987 4433334444568999999999999999
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 240 (383)
+..++++|++++.+.++..+.+.+.|+++.|+.++.+. +..++..++++++|++.+++.....+++.|+++.|..++.+
T Consensus 249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 99999999999988887777788999999999999999 99999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA 320 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 320 (383)
++..+++.|+|+|+|++.. +..+...+.+.|+++.|+.++.+++++++..|+|+|.|++..+.. ...
T Consensus 328 ~~~~v~~~A~~aL~nl~a~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~------------~~~ 394 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV------------EQI 394 (510)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH------------HHH
T ss_pred CCHHHHHHHHHHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH------------HHH
Confidence 9999999999999999987 578899999999999999999999999999999999999976543 345
Q ss_pred HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
..+.+.|+++.|.++++++++++...++++|.+++..
T Consensus 395 ~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 6688999999999999999999999999999888753
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-39 Score=304.61 Aligned_cols=335 Identities=25% Similarity=0.361 Sum_probs=299.6
Q ss_pred ChHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL 84 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L 84 (383)
.......+++.|++|.|+++|.. .+++++..|+|+|+|++.++++.+..+++.|+++.|+.+| .+++..+++.|+|+|
T Consensus 108 ~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL 186 (529)
T 3tpo_A 108 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWAL 186 (529)
T ss_dssp SCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred CCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 33456789999999999999975 6699999999999999999999999999999999999999 788999999999999
Q ss_pred HhhcCCCCC-CChhhhhchhHHHHHhhccCC-----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142 85 SNLCGGKPR-PIFDQVRPCLPTLAQLVHSND-----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ 158 (383)
Q Consensus 85 ~~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~ 158 (383)
+||+.+++. +......|+++.|+.++...+ ..+.+.++|++.+++.+ ..+........+++|.|+.++.++++
T Consensus 187 ~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~lp~L~~LL~~~~~ 265 (529)
T 3tpo_A 187 GNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN-KNPAPPLDAVEQILPTLVRLLHHNDP 265 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC-CTTCCCHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc-ccchhhHHHHhhHHHHHHHHhcCCcH
Confidence 999998743 345556899999999998654 45788999999999987 44433444445689999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
+++..++++|++++.+.++..+.+.+.|+++.|+.++.++ ++.++..++++++|++.+++.....+++.|+++.|+.++
T Consensus 266 ~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 344 (529)
T 3tpo_A 266 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344 (529)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH
Confidence 9999999999999998887778788999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccH
Q 037142 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQ 318 (383)
Q Consensus 239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 318 (383)
.+++..++++|+|+|+|++.. ++.+...+.+.|+++.|+.++.+++++++..|+|+|.|++..+.. .
T Consensus 345 ~~~~~~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~------------~ 411 (529)
T 3tpo_A 345 TNPKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV------------E 411 (529)
T ss_dssp TCSSHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH------------H
T ss_pred cCCCHHHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH------------H
Confidence 999999999999999999987 578889999999999999999999999999999999999976443 3
Q ss_pred HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 319 YAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 319 ~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
....+.+.|+++.|.+++.++++++...++++|.+++.
T Consensus 412 ~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999988874
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.8e-39 Score=293.84 Aligned_cols=342 Identities=18% Similarity=0.173 Sum_probs=288.6
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|++.++++.+..+++.|++|.|+++|++++++++..|+|+|.|++.++++.+..+.+.|+++.|+++|..+++.++++.+
T Consensus 28 ~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a 107 (457)
T 1xm9_A 28 HTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL 107 (457)
T ss_dssp HHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHH
Confidence 46777778888999999999999999999999999999999999998889999999999999999999547789999999
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhc--------c--------CCHHHHHHHHHHHHHhccCCCchHHHHHHHh-
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--------S--------NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA- 143 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~--------~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~- 143 (383)
+|+|+|++.+...+..... |++|.|++++. + .++++++.++|+|.+++.. ++....+.+.
T Consensus 108 ~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~ 184 (457)
T 1xm9_A 108 TGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYS 184 (457)
T ss_dssp HHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTST
T ss_pred HHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcC
Confidence 9999999998544444444 99999999993 2 3567888999999999986 6677778887
Q ss_pred CcHHHHHHhcCC------CChhhHHHHHHHHhhhhcC-------------------------------------------
Q 037142 144 GVCPRLVKLLGH------PSQSVLTQALHTVGNIARG------------------------------------------- 174 (383)
Q Consensus 144 ~~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~------------------------------------------- 174 (383)
|+++.|+.+|++ .+..++..++.+|+++++.
T Consensus 185 g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (457)
T 1xm9_A 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDC 264 (457)
T ss_dssp THHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------------------
T ss_pred CCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccC
Confidence 999999999975 4677888999999998731
Q ss_pred -------CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH---H-HHHH-hcCChHHHHHHhhcCc
Q 037142 175 -------DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ---I-QAVI-DAGLIGPLVNLLQNAV 242 (383)
Q Consensus 175 -------~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~---~-~~~~-~~~~l~~L~~ll~~~~ 242 (383)
.+...+.+++.|+++.++.+|.+..++.+++.|+|+|+|++.++... . +.++ +.|++|.|++++.+++
T Consensus 265 ~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~ 344 (457)
T 1xm9_A 265 PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344 (457)
T ss_dssp -CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC
T ss_pred CccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC
Confidence 12234556677889999999987757899999999999999865332 2 3444 6899999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH------HHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142 243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP------QIVTVCLKALENILKVGEAEKNTDTDIGDV 316 (383)
Q Consensus 243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 316 (383)
.+++++|+|+|.|++.+ ...+.++..+++++|+++|..+++ ++...++++|.+++..+
T Consensus 345 ~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~------------- 408 (457)
T 1xm9_A 345 SDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ------------- 408 (457)
T ss_dssp HHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-------------
Confidence 99999999999999976 234555667899999999997643 68889999999998643
Q ss_pred cHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCCCC
Q 037142 317 NQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYWCGRVVG 361 (383)
Q Consensus 317 ~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~ 361 (383)
+...+.+.++|+++.|.+|+.++ ++++++.|..+|.+||.+.+-+
T Consensus 409 ~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 34677788999999999999999 9999999999999999886643
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.4e-37 Score=289.29 Aligned_cols=334 Identities=25% Similarity=0.372 Sum_probs=299.4
Q ss_pred HHHHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 8 EDKKAVVDHGAVPIFVKLLASPS-DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 8 ~~~~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
+....+++.|+++.|+++|.+++ +.++..|+|+|++++.++++.+..+++.|+++.|+.+| .+++..++..|+|+|++
T Consensus 108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~ 186 (528)
T 4b8j_A 108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGN 186 (528)
T ss_dssp CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 66788999999999999999876 99999999999999999899999999999999999999 67899999999999999
Q ss_pred hcCCCCC-CChhhhhchhHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142 87 LCGGKPR-PIFDQVRPCLPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164 (383)
Q Consensus 87 l~~~~~~-~~~~~~~~~i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a 164 (383)
++.+.+. +......++++.|+.++ .+.++.++..++|+|.+++.. . +........++++.|+.+|.++++.++..+
T Consensus 187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~-~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 264 (528)
T 4b8j_A 187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-K-PQPSFEQTRPALPALARLIHSNDEEVLTDA 264 (528)
T ss_dssp HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS-S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9987533 33444578999999999 577899999999999999987 3 223334457899999999999999999999
Q ss_pred HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-ch
Q 037142 165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-VF 243 (383)
Q Consensus 165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~ 243 (383)
+++|++++.+.+...+.+.+.|+++.|+.++.++ ++.++..|+++|+|++.+++...+.+++.|+++.|+.++.++ ++
T Consensus 265 ~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 343 (528)
T 4b8j_A 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 343 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence 9999999988777777788899999999999999 899999999999999999989999999999999999999998 99
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLV 323 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 323 (383)
.++..|+|+|+|++.. +++....+++.|+++.|+.++.+++++++..|+++|.+++..+. +.....+
T Consensus 344 ~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~------------~~~~~~l 410 (528)
T 4b8j_A 344 SIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS------------HDQIKYL 410 (528)
T ss_dssp HHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC------------HHHHHHH
Confidence 9999999999999985 67888899999999999999999999999999999999998632 2346667
Q ss_pred HHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 324 EEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 324 ~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
.+.|+++.|.+++.+++++++..+..+|.+++...
T Consensus 411 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 411 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998887643
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.5e-36 Score=283.10 Aligned_cols=338 Identities=25% Similarity=0.334 Sum_probs=300.3
Q ss_pred hHHHHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142 7 LEDKKAVVDHGAVPIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS 85 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~ 85 (383)
...+..+++.|+++.|+++|.++ ++.++..|+|+|++++..+++.+..+++.|+++.|+++| .+++..++..|+|+|+
T Consensus 120 ~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~ 198 (530)
T 1wa5_B 120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALG 198 (530)
T ss_dssp SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHH
T ss_pred CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 34567788999999999999996 899999999999999998889999999999999999999 5778999999999999
Q ss_pred hhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142 86 NLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164 (383)
Q Consensus 86 ~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a 164 (383)
+++.+.+ .+......++++.|+.++.+.+++++..++|+|.+++.+ ..+........++++.|+.++.++++.++..+
T Consensus 199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a 277 (530)
T 1wa5_B 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG-KKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 277 (530)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC-SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC-CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 9998753 333445579999999999999999999999999999987 42344455557899999999999999999999
Q ss_pred HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142 165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY 244 (383)
Q Consensus 165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 244 (383)
+++|++++...+...+.+++.|+++.|+.++.+. ++.++..++++|++++.+++...+.+++.|+++.|+.++.++++.
T Consensus 278 ~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 356 (530)
T 1wa5_B 278 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHH
Confidence 9999999988776777788889999999999988 999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHH
Q 037142 245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVE 324 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (383)
++..|+|+|++++.. +++..+.+++.|+++.|+.++.+++++++..|+++|.+++..+... +...+.+.
T Consensus 357 vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~----------~~~~~~l~ 425 (530)
T 1wa5_B 357 IKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR----------PDIIRYLV 425 (530)
T ss_dssp HHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC----------THHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHH
Confidence 999999999999986 5688888889999999999999999999999999999999864320 13455677
Q ss_pred HhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 325 EAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 325 ~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
+.|+++.|.+++.+++++++..|..+|.+++...
T Consensus 426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999888654
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.1e-37 Score=276.64 Aligned_cols=340 Identities=18% Similarity=0.153 Sum_probs=282.8
Q ss_pred CChHHHHHHHhCCChHHHHHhhCCC------------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh----------H
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLASP------------SDDIRMQSVWALGNIAAESPRFRDLVLGEAAL----------I 62 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~~------------~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i----------~ 62 (383)
.+++.|..+++.|++|.|+++|+.. +++++..|+|+|+||+...++..+...+.|++ +
T Consensus 58 ~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (458)
T 3nmz_A 58 SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCE 137 (458)
T ss_dssp SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhH
Confidence 3567889999999999999999963 36999999999999998888877777777777 6
Q ss_pred HHHHHhcCCC-Chh-----HH-------HHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc-----------CCHHHH
Q 037142 63 PLLTQLNNHE-NLS-----MK-------RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS-----------NDEHVM 118 (383)
Q Consensus 63 ~L~~~L~~~~-~~~-----~~-------~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~-----------~~~~~~ 118 (383)
.+++++.... +.+ ++ .+|+|+|.|++.+...+......|+++.|+.++.. .+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~ 217 (458)
T 3nmz_A 138 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217 (458)
T ss_dssp HHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHH
Confidence 6677774221 111 33 39999999998876556666779999999999952 247899
Q ss_pred HHHHHHHHHhccCCCchHHHHHHH-hCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC-CCccccceecCCChHHHHHhhc
Q 037142 119 SNACWGLSLLCDGGKNDEIQAVIE-AGVCPRLVKLLGHPSQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLLI 196 (383)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~l~~ll~ 196 (383)
+.++|+|.+++.+ ++.....+.. .|++|.|+.+|++++++++..++++|++|+.. ++..+..+.+.|+++.|+.+|.
T Consensus 218 ~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl 296 (458)
T 3nmz_A 218 RYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296 (458)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999988 5545555543 56699999999999999999999999999975 4556677889999999999764
Q ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCch----hHHHHHHHHHHHhcCC--CCHHHHHHHH
Q 037142 197 DNHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVF----YIKKEAAWAISNATFG--GTHEQIKYLE 269 (383)
Q Consensus 197 ~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~l~~l~~~--~~~~~~~~l~ 269 (383)
+..++.+++.++++|+|++.++++.+..+. ..|+++.|+.++.+++. ++++.|+|+|.|++.. .++++.+.+.
T Consensus 297 ~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 376 (458)
T 3nmz_A 297 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376 (458)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 432889999999999999986667777777 79999999999987654 4999999999999961 3578899999
Q ss_pred HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 037142 270 REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK 349 (383)
Q Consensus 270 ~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 349 (383)
+.|+++.|+.++.+++.++++.|+++|.|++... +.....+.+.|+++.|.+++.++++++++.|..
T Consensus 377 ~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~-------------~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~ 443 (458)
T 3nmz_A 377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-------------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 443 (458)
T ss_dssp HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC-------------HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC-------------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999998532 234566889999999999999999999999999
Q ss_pred HHHHhcCCC
Q 037142 350 ILETYWCGR 358 (383)
Q Consensus 350 ~l~~~~~~~ 358 (383)
+|.++....
T Consensus 444 AL~nL~~~~ 452 (458)
T 3nmz_A 444 ALRNLMANR 452 (458)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCC
Confidence 999998763
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-36 Score=288.72 Aligned_cols=343 Identities=15% Similarity=0.115 Sum_probs=289.7
Q ss_pred CCChHHHHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-----------------------------HHH-
Q 037142 4 SKTLEDKKAVVD-HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-----------------------------RFR- 52 (383)
Q Consensus 4 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-----------------------------~~~- 52 (383)
+.+++.+..++. .|++|.|+++|+++++.++..|+|+|+|++.+.+ ..+
T Consensus 407 S~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~ 486 (810)
T 3now_A 407 TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486 (810)
T ss_dssp TTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred hCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence 346777888775 6999999999999999999999999999997541 122
Q ss_pred --HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc
Q 037142 53 --DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD 130 (383)
Q Consensus 53 --~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~ 130 (383)
+.+++.|+++.|++++ +++++.++++|+|+|+|++.+.+.+......|++|.|+.++.++++..++.++|+|.+++.
T Consensus 487 r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 487 RITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 6788999999999999 6889999999999999999876655566669999999999999999999999999999997
Q ss_pred CCCchHHHH--HHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHH
Q 037142 131 GGKNDEIQA--VIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYA 207 (383)
Q Consensus 131 ~~~~~~~~~--~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a 207 (383)
. .++.... ....+++|.|+.+|.++.. ..+..++++|.||+..+++..+.+++.|+++.|+.++.+. ++.++..|
T Consensus 566 ~-~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A 643 (810)
T 3now_A 566 T-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAA 643 (810)
T ss_dssp H-SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHH
T ss_pred C-CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHH
Confidence 5 3332211 0113589999999987533 4456899999999998877788899999999999999998 99999999
Q ss_pred HHHHHHHhcCCHHHHHHHHh-cCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCCCC
Q 037142 208 CWIISNITAGNREQIQAVID-AGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCDLLLCPD 285 (383)
Q Consensus 208 ~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~ 285 (383)
+++++|++.++ +....+++ .|.++.|+.++.+++..+|+.|+|+|+|++.. ++.+++.+++ .|+++.|+.++.+++
T Consensus 644 ~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 644 AQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 99999999866 45556664 78999999999999999999999999999974 4788899998 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCCCCCC
Q 037142 286 PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD---NYEIHEKSAKILETYWCGRVVGP 362 (383)
Q Consensus 286 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~---~~~v~~~a~~~l~~~~~~~~~~~ 362 (383)
.+++..|+|++.|++..+. .....+.+.|+++.|.+++..+ +.++++.|.++|+.+...+.-++
T Consensus 722 ~~vq~~A~~aL~NL~~~s~-------------e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGE-------------EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCH-------------HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhCCH-------------HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 9999999999999997422 3567789999999999997654 78999999999999988776555
Q ss_pred Cc
Q 037142 363 QP 364 (383)
Q Consensus 363 ~~ 364 (383)
..
T Consensus 789 ~~ 790 (810)
T 3now_A 789 SD 790 (810)
T ss_dssp --
T ss_pred CC
Confidence 44
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=9.2e-36 Score=275.06 Aligned_cols=341 Identities=18% Similarity=0.224 Sum_probs=279.6
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcC-ChHHHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAE-SPRFRDLVLGEAALIPLLTQLNNHENLSMKRI 79 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~ 79 (383)
|+|.++++++..+++.|+||.|+++|.++++++++.|+|+|.||+.. +++.+..+.+.|+++.|+++|.+..+.++++.
T Consensus 74 ~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~ 153 (584)
T 3l6x_A 74 HLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEV 153 (584)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHH
Confidence 46788999999999999999999999999999999999999999985 68999999999999999999965568899999
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhc------------------cCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH------------------SNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 141 (383)
++++|.||+.....+ .....+++|.|++++. ..++.++++++++|.||+.. .....+.+.
T Consensus 154 aa~aL~nLS~~~~~k-~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~ 231 (584)
T 3l6x_A 154 ITGTLWNLSSHDSIK-MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSE-RSEARRKLR 231 (584)
T ss_dssp HHHHHHHHTTSGGGH-HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHH
T ss_pred HHHHHHHHhCCchhh-HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 999999999865333 3333678999999871 23579999999999999987 555566677
Q ss_pred H-hCcHHHHHHhcCC------CChhhHHHHHHHHhhhhcCCC-------------------------ccccceecCCChH
Q 037142 142 E-AGVCPRLVKLLGH------PSQSVLTQALHTVGNIARGDY-------------------------SQTLYIINCGALP 189 (383)
Q Consensus 142 ~-~~~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~~~-------------------------~~~~~l~~~~~i~ 189 (383)
+ .|+++.|+.++++ .+...+..|+++|+||+.... ...+.+.+.++++
T Consensus 232 ~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~ 311 (584)
T 3l6x_A 232 ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR 311 (584)
T ss_dssp HSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHH
T ss_pred HcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHH
Confidence 6 4677899999864 567899999999999996521 1122333445567
Q ss_pred HHHHhhccccchhHHHHHHHHHHHHhcCCH---HHHH-HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142 190 YLLGLLIDNHKTSIKNYACWIISNITAGNR---EQIQ-AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265 (383)
Q Consensus 190 ~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~---~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 265 (383)
.++.++.+..++.+++.|+++|+|++.+.. ...+ .+.+.++++.|+.+|.+++..+++.|+|+|.|++.... ..
T Consensus 312 ~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~ 389 (584)
T 3l6x_A 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NK 389 (584)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HH
Confidence 888999654489999999999999998752 2223 33467899999999999999999999999999998742 22
Q ss_pred HHHHHcCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc
Q 037142 266 KYLEREGCIKPLCDLLLCP--------DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR 337 (383)
Q Consensus 266 ~~l~~~~~i~~L~~ll~~~--------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~ 337 (383)
..+..|+++.|+.+|.++ ..+++..|+++|.|++.... ...+.+.+.|+++.|.+++.
T Consensus 390 -~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-------------~~~~~I~~~g~I~~Lv~LL~ 455 (584)
T 3l6x_A 390 -ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-------------EAAKKLRETQGIEKLVLINK 455 (584)
T ss_dssp -HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHTTHHHHHHHHHT
T ss_pred -HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHCCChHHHHHHHh
Confidence 344778999999999876 35788899999999996433 34566889999999999999
Q ss_pred CC--CHHHHHHHHHHHHHhcCCCC
Q 037142 338 HD--NYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 338 ~~--~~~v~~~a~~~l~~~~~~~~ 359 (383)
++ .+.+.+.|..+|.+++...+
T Consensus 456 s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 456 SGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCCCChHHHHHHHHHHHHHHcCHH
Confidence 86 88999999999999997654
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-35 Score=282.97 Aligned_cols=362 Identities=16% Similarity=0.099 Sum_probs=299.0
Q ss_pred ccCCChHHHHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 2 IASKTLEDKKAVV-DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 2 ~~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
+.++.++....++ ..|+++.|+.++.++++.++..|+|++++++.+ +..|+.+.+.|+ +.|..++ ++.+..++..|
T Consensus 274 i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll-~s~~~~vr~~A 350 (810)
T 3now_A 274 LLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLY-HSKNDGIRVRA 350 (810)
T ss_dssp HHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHT-TCSCHHHHHHH
T ss_pred HhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHH-cCCCHHHHHHH
Confidence 4567788888888 789999999999999999999999999998776 789999999885 9999999 57778899999
Q ss_pred HHHHHhhcCCC---CC-CCh--hhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh
Q 037142 81 TWTLSNLCGGK---PR-PIF--DQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL 152 (383)
Q Consensus 81 ~~~L~~l~~~~---~~-~~~--~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~ 152 (383)
+++|+++.... +. ... .....+++.+.+++.++ +++++++++|+|.+++.. ++.......+.|++|.|+.+
T Consensus 351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~L 429 (810)
T 3now_A 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDL 429 (810)
T ss_dssp HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHH
Confidence 99999997532 22 221 22356688899999887 899999999999999988 44444444467999999999
Q ss_pred cCCCChhhHHHHHHHHhhhhcCCCcc--------------------------------ccceecCCChHHHHHhhccccc
Q 037142 153 LGHPSQSVLTQALHTVGNIARGDYSQ--------------------------------TLYIINCGALPYLLGLLIDNHK 200 (383)
Q Consensus 153 L~~~~~~v~~~a~~~L~~l~~~~~~~--------------------------------~~~l~~~~~i~~l~~ll~~~~~ 200 (383)
|+++++.++..++++|.|++.+.+.. ++.+++.|+++.|+.++.++ +
T Consensus 430 L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s 508 (810)
T 3now_A 430 ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-S 508 (810)
T ss_dssp HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-C
T ss_pred hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-C
Confidence 99999999999999999999865311 25677889999999999998 9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHH-HHcCChHHHHh
Q 037142 201 TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYL-EREGCIKPLCD 279 (383)
Q Consensus 201 ~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~~~~i~~L~~ 279 (383)
+.+++.|+|+|+|++. +++.+..+++.|++|.|+.++.++++..|+.|+|+|+|++...+++..... ...+++++|++
T Consensus 509 ~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~ 587 (810)
T 3now_A 509 HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587 (810)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH
Confidence 9999999999999984 567999999999999999999999999999999999999876555543210 11359999999
Q ss_pred hcCCCCH-HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 280 LLLCPDP-QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 280 ll~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
++.++.. ..+..|+++|.|++...+ ...+.+.+.|+++.|.+++.++++.|++.|..++.++....
T Consensus 588 LL~~~~~~l~~~eAl~AL~NLa~~~d-------------~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 588 LLQQDCTALENFESLMALTNLASMNE-------------SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCH-------------HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 9986533 445689999999997543 34555778999999999999999999999999999988653
Q ss_pred C-----------CCCCcccccccccccchhhhccC
Q 037142 359 V-----------VGPQPGLLYAGNEENEEEDALGV 382 (383)
Q Consensus 359 ~-----------~~~~~~~~~~~~~~~~~~~~~~~ 382 (383)
+ -..+..++.+.+...+..++|++
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3 14455667778888888888875
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=265.99 Aligned_cols=300 Identities=18% Similarity=0.190 Sum_probs=253.9
Q ss_pred CccCCChHHHHHHHhCCCh----------HHHHHhhCCC--ChH-----HHH-------HHHHHHHHHhcCChHHHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAV----------PIFVKLLASP--SDD-----IRM-------QSVWALGNIAAESPRFRDLVL 56 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i----------~~L~~lL~~~--~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~ 56 (383)
|+++++++......+.|++ +.+++++.+. +++ +++ +|+|+|+|++.+ +++|+.+.
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 5667778888888888888 7777888764 223 555 999999999765 89999999
Q ss_pred hcCChHHHHHHhcC----------CCChhHHHHHHHHHHhhcCCCCCCChhh--hhchhHHHHHhhccCCHHHHHHHHHH
Q 037142 57 GEAALIPLLTQLNN----------HENLSMKRIATWTLSNLCGGKPRPIFDQ--VRPCLPTLAQLVHSNDEHVMSNACWG 124 (383)
Q Consensus 57 ~~g~i~~L~~~L~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~l~~ll~~~~~~~~~~~~~~ 124 (383)
+.|++++|+.+|.. +.+..+++.|+|+|.||+.+++.....+ ..|++|.|+.++.+++++++..++|+
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 266 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999931 1346789999999999998764222222 35679999999999999999999999
Q ss_pred HHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCCcccccee-cCCChHHHHHhhccccch-
Q 037142 125 LSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDYSQTLYII-NCGALPYLLGLLIDNHKT- 201 (383)
Q Consensus 125 l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~l~~ll~~~~~~- 201 (383)
|.+++...++.+...+.+.|+++.|+++| +++++.++..++.+|+||+.++++....+. ..|+++.|+.+|.+. ++
T Consensus 267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~-~~~ 345 (458)
T 3nmz_A 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQT 345 (458)
T ss_dssp HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC-CSS
T ss_pred HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC-CCc
Confidence 99999741346777888999999999975 557889999999999999985544444455 789999999999877 43
Q ss_pred ---hHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 037142 202 ---SIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIK 275 (383)
Q Consensus 202 ---~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~ 275 (383)
.+++.++++|.|++. ++++.++.+.+.|+++.|+.+|.+++..++++|+|+|+|++.. ++++...+.+.|+++
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~ 424 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVS 424 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHH
Confidence 489999999999997 7889999999999999999999999999999999999999965 578999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 276 PLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 276 ~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
+|++++.++++.+++.|+++|.|++...
T Consensus 425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 425 MLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999754
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.4e-33 Score=260.34 Aligned_cols=331 Identities=25% Similarity=0.323 Sum_probs=288.9
Q ss_pred HHHHhC-CChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142 11 KAVVDH-GAVPIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC 88 (383)
Q Consensus 11 ~~~~~~-g~i~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~ 88 (383)
..+++. |+++.|+++|.++ ++.++..|+++|.+++..+++....+.+.|+++.|+++| +++++.++..++++|++++
T Consensus 57 ~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 57 DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIA 135 (450)
T ss_dssp HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 456777 9999999999997 899999999999999998888888888999999999999 6789999999999999999
Q ss_pred CCCCC-CChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCC-chHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 037142 89 GGKPR-PIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGK-NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL 165 (383)
Q Consensus 89 ~~~~~-~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~ 165 (383)
.+.+. +......++++.+++++.+ .+.+++..++|+|.+++.. . +....... .++++.++.++.++++.++..++
T Consensus 136 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~ 213 (450)
T 2jdq_A 136 GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG-KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADAC 213 (450)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC-SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC-CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHH
Confidence 87632 2333447899999999995 6899999999999999976 3 22112222 57899999999999999999999
Q ss_pred HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhH
Q 037142 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI 245 (383)
Q Consensus 166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 245 (383)
++|++++...+.....+.+.|+++.++.++.++ ++.++..++++|++++.+++...+.+++.|+++.|+.++.++++.+
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 292 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI 292 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHH
Confidence 999999987766666677889999999999988 9999999999999999998888888889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH
Q 037142 246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE 325 (383)
Q Consensus 246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 325 (383)
|..|+|+|++++.. ++...+.+.+.|+++.|++++.+++++++..|+++|.+++..+.. ...+.+.+
T Consensus 293 r~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~l~~ 359 (450)
T 2jdq_A 293 KKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA------------EQIKYLVE 359 (450)
T ss_dssp HHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH------------HHHHHHHH
Confidence 99999999999975 467888888899999999999999999999999999999975321 23444568
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 326 AKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 326 ~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
.|+++.|.+++.+++.+++..|..+|.++....
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998887644
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2e-32 Score=257.82 Aligned_cols=332 Identities=17% Similarity=0.176 Sum_probs=279.1
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRI 79 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~ 79 (383)
|++.++++.+..+++.|+++.|++++.+ .+...+..++.+|.+++. +++.+..+.+.|+++.|+.++ .+++..++..
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~ 246 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQN 246 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHH
Confidence 4567789999999999999999999987 455677788999999997 457889999999999999999 5668999999
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CC
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PS 157 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~ 157 (383)
++|+|.+++...+.. ....+++|.+.+++.+++++++..++++|.+++.+ +++....+.+.|+++.++++|.+ ++
T Consensus 247 a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHccCCH
Confidence 999999999876432 23468999999999999999999999999999987 66788889999999999999976 34
Q ss_pred hhhHHHHHHHHhhhhcCCCc---cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142 158 QSVLTQALHTVGNIARGDYS---QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL 234 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L 234 (383)
+.++..++++|++++..++. ....+.+.|+++.++.++.++.++.++..++|+++|++.++ .....+.+.|+++.|
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L 402 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRL 402 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHH
Confidence 79999999999999976543 23467788999999999998834699999999999999865 445778899999999
Q ss_pred HHHhhcCchhHHHHHHHHHHH----------------------hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142 235 VNLLQNAVFYIKKEAAWAISN----------------------ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC 292 (383)
Q Consensus 235 ~~ll~~~~~~v~~~a~~~l~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 292 (383)
+.++.++++++|++|+|+++| ++.. ++....+.+.|+++.|+.++.+++++++..+
T Consensus 403 ~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a 480 (529)
T 1jdh_A 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480 (529)
T ss_dssp HHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--chHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence 999999888999988887776 4432 4556678889999999999999999999999
Q ss_pred HHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 293 LKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 293 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
.+++.++... +.+...+.+.|+++.|.+++++++++|++.|..+|.++
T Consensus 481 ~~~l~~l~~~--------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 481 AGVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTS--------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9999998742 23677799999999999999999999999999999865
No 18
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.4e-33 Score=243.47 Aligned_cols=273 Identities=19% Similarity=0.192 Sum_probs=235.0
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC----------CCChhHHHHHHHHHHhhcCCCC-CCChhh
Q 037142 30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN----------HENLSMKRIATWTLSNLCGGKP-RPIFDQ 98 (383)
Q Consensus 30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 98 (383)
+...+.+|+|+|+|++.+ +++|+.+.+.|+++.|+.+|.. ..+..++..|+|+|.||+.+++ .+....
T Consensus 45 ~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566899999999987 7999999999999999999931 1246789999999999998763 222222
Q ss_pred -hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCC
Q 037142 99 -VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 99 -~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
..|++|.|+++++++++++++.++|+|.+++...++++...+.+.|++|.|+++| ++++++++..++.+|++|+.+++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 3566999999999999999999999999999741345677888999999999975 66788999999999999998665
Q ss_pred cccccee-cCCChHHHHHhhccccch----hHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHHhhcCchhHHHH
Q 037142 177 SQTLYII-NCGALPYLLGLLIDNHKT----SIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE 248 (383)
Q Consensus 177 ~~~~~l~-~~~~i~~l~~ll~~~~~~----~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 248 (383)
+....+. ..|+++.|+.++.+. ++ .+++.++++|.|++. ++++.++.+.+.|+++.|+.++.+++..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 4444555 789999999999876 43 489999999999997 68899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
|+|+|.|++.. ++++.+.+.+.|+++.|++++.++++.+++.|+++|.+++...+.
T Consensus 283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999965 578899999999999999999999999999999999999987544
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.7e-33 Score=258.63 Aligned_cols=343 Identities=13% Similarity=0.128 Sum_probs=278.0
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCCh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIF 96 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~ 96 (383)
.+|.|+++|++++++++..|+++|.+++..++..+..+.+.|+++.|+++| +++++.++..|+|+|.||+.++ +.+..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 589999999999999999999999999988878888899999999999999 6788999999999999999974 44445
Q ss_pred hhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC--------C--------CChh
Q 037142 97 DQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG--------H--------PSQS 159 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~--------~--------~~~~ 159 (383)
....|++|.|++++. ++++++++.++|+|++++.. ++....+.+ |++|.|+.+|. + .+..
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 556899999999999 88999999999999999987 456666777 99999999993 2 2456
Q ss_pred hHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccc-----cchhHHHHHHHHHHHHhcCC---------------
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDN-----HKTSIKNYACWIISNITAGN--------------- 218 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~-----~~~~~~~~a~~~l~nl~~~~--------------- 218 (383)
+...++++|+||+.+ ++..+.+.+. |+++.|+.++.+. .+..+...+++++.|++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 777999999999987 6677778887 9999999999851 15678889999999986311
Q ss_pred -----------------------------------HHHHHHHHhcCChHHHHHHhhcC-chhHHHHHHHHHHHhcCCCCH
Q 037142 219 -----------------------------------REQIQAVIDAGLIGPLVNLLQNA-VFYIKKEAAWAISNATFGGTH 262 (383)
Q Consensus 219 -----------------------------------~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~ 262 (383)
+...+.+++.++++.++.++.+. ++.+++.|+|+|+|++....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 01122344566788999999764 789999999999999986432
Q ss_pred --HHH-HHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142 263 --EQI-KYLE-REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH 338 (383)
Q Consensus 263 --~~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 338 (383)
... +..+ +.|+++.|++++.+++.+++..|+|+|.++..... ....+ ..|+++.|.+++.+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--------------~~~~i-~~~~i~~Lv~lL~~ 382 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--------------LHRVM-GNQVFPEVTRLLTS 382 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--------------GHHHH-HHHTHHHHHHTTTS
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--------------HHHHH-HHhhhHHHHHhccC
Confidence 122 4444 58999999999999999999999999999986321 23344 45789999999988
Q ss_pred CCH------HHHHHHHHHHHHhcCCCCC-----------CCCccccccc-ccccchhhhc
Q 037142 339 DNY------EIHEKSAKILETYWCGRVV-----------GPQPGLLYAG-NEENEEEDAL 380 (383)
Q Consensus 339 ~~~------~v~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~ 380 (383)
+++ ++...+..++.++...+.+ +++..++.++ ++..+++|++
T Consensus 383 ~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 643 6778888888888766542 7778888888 7777777664
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.4e-32 Score=258.38 Aligned_cols=335 Identities=17% Similarity=0.162 Sum_probs=280.6
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRI 79 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~ 79 (383)
|++.++++++..+++.|+++.|++++.+. ...++..++.+|.+++. +++.+..+++.|+++.|+.++ .+.+..+++.
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~ 243 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQN 243 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHH
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHH
Confidence 45667899999999999999999999974 46788999999999996 457899999999999999999 5678999999
Q ss_pred HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC-
Q 037142 80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS- 157 (383)
Q Consensus 80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~- 157 (383)
++|+|.+++...+.. ....++++.|++++.+++++++..++++|.+++.. +......+.+.|+++.|+.++.+ ++
T Consensus 244 a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~ 320 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR 320 (644)
T ss_dssp HHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHHccCCc
Confidence 999999999875332 34468999999999999999999999999999988 66778888999999999999987 33
Q ss_pred hhhHHHHHHHHhhhhcCCCc---cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142 158 QSVLTQALHTVGNIARGDYS---QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL 234 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L 234 (383)
+.++..++++|++++...++ ....+.+.|+++.|+.+|.+..++.++..++++|+|++.++. ....+++.|+++.|
T Consensus 321 ~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~L 399 (644)
T 2z6h_A 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRL 399 (644)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHH
Confidence 79999999999999975442 223367789999999999987347999999999999998764 45788899999999
Q ss_pred HHHhhcCchhHH----------------------HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142 235 VNLLQNAVFYIK----------------------KEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC 292 (383)
Q Consensus 235 ~~ll~~~~~~v~----------------------~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 292 (383)
+.++.+++.++| ..++.+|.+++.. ......+.+.|+++.|++++.+++++++..+
T Consensus 400 v~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 477 (644)
T 2z6h_A 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477 (644)
T ss_dssp HHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence 999987655444 4555556666654 4556677789999999999999999999999
Q ss_pred HHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 293 LKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 293 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
+++|.++... +.+...+.+.|+++.|.+++++++++|+..|..+|.++..+
T Consensus 478 ~~aL~~l~~~--------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 478 AGVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHHHHHTS--------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcC--------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 9999998852 23677899999999999999999999977665555554443
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.6e-32 Score=253.60 Aligned_cols=347 Identities=15% Similarity=0.158 Sum_probs=276.2
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC-C-C
Q 037142 15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG-K-P 92 (383)
Q Consensus 15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~-~-~ 92 (383)
..+.++.|+++|.+++++++..|+++|.+++..+++.+..+.+.|+|+.|+++| ++++..+++.|+|+|.||+.+ + .
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHH
Confidence 467899999999999999999999999999998889999999999999999999 688999999999999999985 3 4
Q ss_pred CCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-----------------
Q 037142 93 RPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG----------------- 154 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~----------------- 154 (383)
.+......|++|.|++++.+ .+.++++.++++|++|+.. +++...+.+ +++|.|++++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 44556669999999999997 6789999999999999986 556666665 46899999871
Q ss_pred -CCChhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccc-----cchhHHHHHHHHHHHHhcCCHHH------
Q 037142 155 -HPSQSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDN-----HKTSIKNYACWIISNITAGNREQ------ 221 (383)
Q Consensus 155 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~-----~~~~~~~~a~~~l~nl~~~~~~~------ 221 (383)
.+++.++..+.++|+||+..+++..+.+.+. |+++.|+.++.+. .+...++.|+++|.||+......
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 2467999999999999998877666667765 6678999998741 26778999999999998652111
Q ss_pred -------------------HHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCH--HHHH-HHHHcCChHHHH
Q 037142 222 -------------------IQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTH--EQIK-YLEREGCIKPLC 278 (383)
Q Consensus 222 -------------------~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~--~~~~-~l~~~~~i~~L~ 278 (383)
.+.+.+.++++.++.++. +.++.+++.|+|+|.|++....+ ...+ .+.+.++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 111223345677888886 46899999999999999876422 2233 333468899999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC--------CHHHHHHHHHH
Q 037142 279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD--------NYEIHEKSAKI 350 (383)
Q Consensus 279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~--------~~~v~~~a~~~ 350 (383)
++|.+++.+++..|+++|.|+..... ....| ..|+++.|.+++.++ ++++...|..+
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--------------~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~t 426 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDAR--------------NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCS--------------CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChh--------------HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999997432 12334 679999999999886 46788888888
Q ss_pred HHHhcCCCCC-----------CCCccccccc--ccccchhhhc
Q 037142 351 LETYWCGRVV-----------GPQPGLLYAG--NEENEEEDAL 380 (383)
Q Consensus 351 l~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~ 380 (383)
|.++...+.+ .++..+++++ ++..+.+|++
T Consensus 427 L~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 427 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 8887765432 6777777776 5555555554
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=9.3e-33 Score=260.10 Aligned_cols=375 Identities=16% Similarity=0.127 Sum_probs=296.6
Q ss_pred ccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHH
Q 037142 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIAT 81 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~ 81 (383)
++..+++.+..+++.|+++.|++++.+++++++..++.+|.+++..+++.+..+.+.|+++.|++++.+..+...+..++
T Consensus 128 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHH
Confidence 45555677888889999999999999999999999999999999988999999999999999999996666677788899
Q ss_pred HHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhH
Q 037142 82 WTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161 (383)
Q Consensus 82 ~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~ 161 (383)
.+|.+++.....+......++++.+..++.+++++++..++|++.+++.. .+.. . ...++++.+++++.+++++++
T Consensus 208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~-~--~~~~~i~~L~~ll~~~~~~v~ 283 (529)
T 1jdh_A 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQ-E--GMEGLLGTLVQLLGSDDINVV 283 (529)
T ss_dssp HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT-CTTC-S--CCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC-Chhh-H--HHHhHHHHHHHHHcCCCHHHH
Confidence 99999998654444455589999999999999999999999999999987 3221 1 123679999999999999999
Q ss_pred HHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhcCCHH---HHHHHHhcCChHHHHHH
Q 037142 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVNL 237 (383)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~~~~~---~~~~~~~~~~l~~L~~l 237 (383)
..++++|++++.++++..+.+.+.|+++.++.++.+. .++.++..++++|+|++.++++ .+..+.+.|+++.|+.+
T Consensus 284 ~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l 363 (529)
T 1jdh_A 284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363 (529)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH
Confidence 9999999999988777788888999999999999863 1479999999999999886433 46677899999999999
Q ss_pred hhcCc-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH--HhchhcccC-----
Q 037142 238 LQNAV-FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL--KVGEAEKNT----- 309 (383)
Q Consensus 238 l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~--~~~~~~~~~----- 309 (383)
+.+++ ..++..++|+|+|++.. ++....+.+.|+++.|++++.+++++++..+.|++.|.. ..+...+..
T Consensus 364 L~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~ 441 (529)
T 1jdh_A 364 LHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 441 (529)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHH
Confidence 99876 59999999999999986 344578889999999999999888888887777776611 100000000
Q ss_pred -cCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC----------CCCCCCcccccccccccchhh
Q 037142 310 -DTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG----------RVVGPQPGLLYAGNEENEEED 378 (383)
Q Consensus 310 -~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 378 (383)
..........+..+.+.|+++.|.+++.+++++++..+..++.++..+ +..+++..+..+.++..+..+
T Consensus 442 al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a 521 (529)
T 1jdh_A 442 ALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521 (529)
T ss_dssp HHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHH
Confidence 000000123455688999999999999999999999999999887754 223677888888888888888
Q ss_pred hccC
Q 037142 379 ALGV 382 (383)
Q Consensus 379 ~~~~ 382 (383)
++++
T Consensus 522 ~~aL 525 (529)
T 1jdh_A 522 AAVL 525 (529)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1.4e-29 Score=246.91 Aligned_cols=336 Identities=17% Similarity=0.165 Sum_probs=284.3
Q ss_pred ccCCChHHHHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 2 IASKTLEDKKAVVDHGAVPIFVKLLASPS-DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
++..+++.+..+++.|+++.|++++.+.+ ...+..++.+|.+++.. +..+..+++.|+++.|+.++ .+.+..+++.+
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a 380 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNC 380 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHH
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHH
Confidence 45567899999999999999999999754 55677889999999964 57888899999999999999 56788999999
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC-h
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS-Q 158 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~-~ 158 (383)
+++|.+++...+. .....++++.|++++.+.+++++..++++|.+++.. +.+....+.+.|+++.|+.+|.+ ++ +
T Consensus 381 ~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 457 (780)
T 2z6g_A 381 LWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDRE 457 (780)
T ss_dssp HHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHH
Confidence 9999999987633 233478999999999999999999999999999998 67788888889999999999987 33 4
Q ss_pred hhHHHHHHHHhhhhcCCCcc---ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142 159 SVLTQALHTVGNIARGDYSQ---TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~---~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~ 235 (383)
.++..++++|++++...++. ...+...|+++.|+.++.+...+.++..++++|+|++.++ .....+.+.|+++.|+
T Consensus 458 ~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv 536 (780)
T 2z6g_A 458 DITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLV 536 (780)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHH
Confidence 89999999999998765432 2356778999999999998834599999999999999865 5567788999999999
Q ss_pred HHhhcCchh----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHH
Q 037142 236 NLLQNAVFY----------------------IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCL 293 (383)
Q Consensus 236 ~ll~~~~~~----------------------v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 293 (383)
.++.+++.+ ++..++.+|++++.. +.....+.+.|+++.|++++.++++.++..++
T Consensus 537 ~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 614 (780)
T 2z6g_A 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614 (780)
T ss_dssp HHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH
Confidence 999875543 455667777777754 56667778899999999999999999999999
Q ss_pred HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 294 KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 294 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.+|.++... +.....|.+.|+++.|.+++++++++|++.|..+|.++..+..
T Consensus 615 ~aL~~L~~~--------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 615 GVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHTS--------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcC--------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999742 2467789999999999999999999999998888888877654
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.8e-31 Score=255.10 Aligned_cols=362 Identities=18% Similarity=0.169 Sum_probs=299.2
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|+++.+++.+..+++.|+++.|+++|.+++++++..++.+|.+++..+++.+..+.+.|+++.|++++.+......+..+
T Consensus 124 nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a 203 (644)
T 2z6h_A 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203 (644)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHH
Confidence 34555567788889999999999999999999999999999999988889999999999999999999655567888999
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV 160 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v 160 (383)
+.+|.+++.....+......++++.+++++.+.+..++..++|+|.+++.. .... . ...++++.|+.++.++++++
T Consensus 204 ~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~-~--~~~~~i~~Lv~lL~~~d~~v 279 (644)
T 2z6h_A 204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQ-E--GMEGLLGTLVQLLGSDDINV 279 (644)
T ss_dssp HHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-CTTC-C--SCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-chhh-h--hhhhHHHHHHHHHcCCCHHH
Confidence 999999998655455555689999999999999999999999999999986 3221 1 11257999999999999999
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc-hhHHHHHHHHHHHHhcCCH---HHHHHHHhcCChHHHHH
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-TSIKNYACWIISNITAGNR---EQIQAVIDAGLIGPLVN 236 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-~~~~~~a~~~l~nl~~~~~---~~~~~~~~~~~l~~L~~ 236 (383)
+..++++|++|+.+++...+.+.+.|+++.|+.++.+..+ +.++..++++|+|++..++ .....+++.++++.|+.
T Consensus 280 ~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~ 359 (644)
T 2z6h_A 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHH
Confidence 9999999999998877777888899999999999987423 7999999999999987543 23444678999999999
Q ss_pred HhhcCc-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH----------------------HHHHHHH
Q 037142 237 LLQNAV-FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP----------------------QIVTVCL 293 (383)
Q Consensus 237 ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~----------------------~v~~~al 293 (383)
++.+++ ..+++.|+|+|+|++.. ++....+.+.|+++.|++++.+.++ +++..++
T Consensus 360 lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~ 437 (644)
T 2z6h_A 360 LLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 437 (644)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHH
T ss_pred HhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHH
Confidence 998874 69999999999999986 3445788899999999999976544 4555566
Q ss_pred HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC----------CCCCC
Q 037142 294 KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR----------VVGPQ 363 (383)
Q Consensus 294 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~ 363 (383)
.+|.+++... ..+..+.+.|+++.|.+++.+++++++..|..+|.++..+. .-+++
T Consensus 438 ~aL~~La~~~--------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 438 GALHILARDV--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503 (644)
T ss_dssp HHHHHHTTSH--------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhcCH--------------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHH
Confidence 6666666432 24566889999999999999999999999999988877542 12577
Q ss_pred cccccccccccchhhhccC
Q 037142 364 PGLLYAGNEENEEEDALGV 382 (383)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~ 382 (383)
..++.+.+...|.++++++
T Consensus 504 ~~ll~~~~~~vr~~A~~aL 522 (644)
T 2z6h_A 504 TELLHSRNEGVATYAAAVL 522 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 7888888888888877654
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.9e-31 Score=233.35 Aligned_cols=254 Identities=19% Similarity=0.170 Sum_probs=222.3
Q ss_pred CChHHHHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHhcCCC
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLLTQLNNHE 72 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~~~ 72 (383)
.++++|..+++.|+++.|+.+|.. .+++++..|+|+|.|++..++..+..+... |+++.|+++| +++
T Consensus 61 ~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~ 139 (354)
T 3nmw_A 61 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSE 139 (354)
T ss_dssp TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGG-GCS
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHH-CCC
Confidence 468999999999999999999952 347899999999999999887788877654 5699999999 688
Q ss_pred ChhHHHHHHHHHHhhcCC-C-CCCChhhhhchhHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCchHHHHHH-HhCcHHH
Q 037142 73 NLSMKRIATWTLSNLCGG-K-PRPIFDQVRPCLPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPR 148 (383)
Q Consensus 73 ~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~i~~ 148 (383)
+++++..++|+|.||+.. + ..+......|++|.|++++ ++.++++++.++++|++|+.. .+++...+. ..|+++.
T Consensus 140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~ 218 (354)
T 3nmw_A 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAF 218 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHH
Confidence 999999999999999985 2 2234445589999999975 567899999999999999985 456666666 6899999
Q ss_pred HHHhcCCCCh----hhHHHHHHHHhhhhc---CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH
Q 037142 149 LVKLLGHPSQ----SVLTQALHTVGNIAR---GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221 (383)
Q Consensus 149 l~~~L~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~ 221 (383)
|+.+|.++++ +++..++++|++++. .+++..+.+.+.|+++.|+.+|.+. +..+++.|+++|+|++.++++.
T Consensus 219 Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 219 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp HHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHH
Confidence 9999988654 489999999999996 5777778889999999999999998 9999999999999999888899
Q ss_pred HHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC
Q 037142 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT 261 (383)
Q Consensus 222 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 261 (383)
++.+.+.|+++.|++++.+++..+++.|+|+|.|++.+.+
T Consensus 298 ~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999998754
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1.7e-30 Score=253.48 Aligned_cols=362 Identities=18% Similarity=0.173 Sum_probs=298.9
Q ss_pred CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80 (383)
Q Consensus 1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a 80 (383)
|++..+++.+..+.+.|+++.|+++|.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.+++.......+..+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 35555677888888999999999999999999999999999999988889999999999999999999655566677788
Q ss_pred HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142 81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV 160 (383)
Q Consensus 81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v 160 (383)
+.+|.+++.....+......++++.|+.++.+.+..++..++++|.+++.. .... . ...++++.|+.+|.++++.+
T Consensus 340 ~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~-~~~~-~--~~~~~i~~Lv~lL~~~d~~v 415 (780)
T 2z6g_A 340 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQ-E--GMEGLLGTLVQLLGSDDINV 415 (780)
T ss_dssp HHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT-CTTC-S--CCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhcc-chhh-h--hhhhHHHHHHHHHcCCCHHH
Confidence 999999997654444455588999999999999999999999999999987 3221 1 11357899999999999999
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc-hhHHHHHHHHHHHHhcCCHH---HHHHHHhcCChHHHHH
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-TSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVN 236 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-~~~~~~a~~~l~nl~~~~~~---~~~~~~~~~~l~~L~~ 236 (383)
+..++++|++|+.+++...+.+.+.|+++.|+.++.+..+ +.++..|+++|+|++..+++ ....+.+.++++.|+.
T Consensus 416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998887777888889999999999986423 48999999999999875433 3456778999999999
Q ss_pred HhhcCch-hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH----------------------HHHHHHH
Q 037142 237 LLQNAVF-YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP----------------------QIVTVCL 293 (383)
Q Consensus 237 ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~----------------------~v~~~al 293 (383)
++.+++. .+++.|+|+|+|++.. +.....+.+.|+++.|++++.++++ +++..++
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~ 573 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence 9998764 9999999999999975 5556788899999999999876443 4555666
Q ss_pred HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC----------CCCCC
Q 037142 294 KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR----------VVGPQ 363 (383)
Q Consensus 294 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~ 363 (383)
.+|.+++.. ...+..+.+.|+++.|.+++.+++++++..|..+|.++..+. --+++
T Consensus 574 ~aL~~La~~--------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L 639 (780)
T 2z6g_A 574 GALHILARD--------------IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 639 (780)
T ss_dssp HHHHHHTTS--------------HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhcC--------------hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHH
Confidence 777776532 224556889999999999999999999999999998876442 23667
Q ss_pred cccccccccccchhhhccC
Q 037142 364 PGLLYAGNEENEEEDALGV 382 (383)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~ 382 (383)
..++.+.+...|.++++++
T Consensus 640 ~~Ll~~~~~~Vr~~A~~aL 658 (780)
T 2z6g_A 640 TELLHSRNEGVATYAAAVL 658 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 7788888888888887764
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2.7e-29 Score=213.33 Aligned_cols=241 Identities=26% Similarity=0.358 Sum_probs=223.1
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 95 (383)
|.++.|+++|.+++++++..|+++|.+++..+++.+..+.+.|+++.|+++| ++++..++..++++|++++.+. ..+.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6789999999999999999999999999998888999999999999999999 6778999999999999999885 3334
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
.....++++.++.++++++++++..++++|.+++.. .++....+.+.|+++.++++++++++.++..++++|++++..+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 455579999999999999999999999999999976 6778888889999999999999999999999999999999888
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
+...+.+.+.|+++.++.++.++ ++.++..++++|++++.+++...+.+.+.|+++.|+.++.++++.++..|+++|.|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 77777788999999999999988 99999999999999999888999999999999999999999999999999999999
Q ss_pred hcCCC
Q 037142 256 ATFGG 260 (383)
Q Consensus 256 l~~~~ 260 (383)
++...
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98764
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=4.2e-29 Score=212.18 Aligned_cols=239 Identities=33% Similarity=0.469 Sum_probs=217.0
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 95 (383)
..++.+.+.|.+++++++..|+++|.++...+++.+..+.+.|+++.|+++| +++++.++..++++|++++.+. ....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4688999999999999999999999887765678888999999999999999 6778999999999999999865 3334
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
.....|+++.++.++++++++++..++++|.+++.. .......+.+.|+++.++.+|.++++.++..++++|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 445588999999999999999999999999999988 5444478889999999999999999999999999999999888
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
+...+.+.+.|+++.|+.++.++ ++.++..++++|+|++.+++.....+.+.|+++.|+.++.++++.++..|+++|.|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777788899999999999998 99999999999999999998999999999999999999999999999999999999
Q ss_pred hcC
Q 037142 256 ATF 258 (383)
Q Consensus 256 l~~ 258 (383)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.6e-28 Score=206.36 Aligned_cols=244 Identities=28% Similarity=0.368 Sum_probs=223.8
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (383)
|.++.|+++| ++++++++..++++|.+++...+ ........++++.+++++++++++++..++++|.+++.. .++..
T Consensus 2 ~~i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAI 79 (252)
T ss_dssp CHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred CcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHH
Confidence 5689999999 67789999999999999998874 334445579999999999999999999999999999987 67888
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~ 217 (383)
..+.+.|+++.++.+++++++.++..++++|++++..++.....+.+.|+++.++.++.++ ++.++..++++|+|++..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 8889999999999999999999999999999999987777788888999999999999998 999999999999999999
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297 (383)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~ 297 (383)
++.....+.+.|+++.|+.++.++++.++..|+++|++++.. ++...+.+.+.|+++.|++++++++++++..|+++|.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999985 5788889999999999999999999999999999999
Q ss_pred HHHHhchhc
Q 037142 298 NILKVGEAE 306 (383)
Q Consensus 298 ~l~~~~~~~ 306 (383)
++.......
T Consensus 238 ~l~~~~~~~ 246 (252)
T 4hxt_A 238 NIKSGGWLE 246 (252)
T ss_dssp HHHHTCBCC
T ss_pred HHHcCCCcc
Confidence 999876544
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.2e-27 Score=203.18 Aligned_cols=239 Identities=36% Similarity=0.521 Sum_probs=215.8
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (383)
...+.++..| ++++++++..++++|.++.... +........++++.+++++++++++++..++++|.+++.+ .++..
T Consensus 12 ~~~~~~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQI 89 (252)
T ss_dssp CSHHHHHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred chHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHH
Confidence 4578899999 6888999999999998766543 3334445589999999999999999999999999999987 67888
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~ 217 (383)
..+.+.|+++.++.+|+++++.++..++++|++++...+.....+.+.|+++.++.++.++ ++.++..++++|+|++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999988776656788999999999999998 999999999999999998
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297 (383)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~ 297 (383)
++.....+.+.|+++.|+.++.++++.++..|+++|++++.. +++....+.+.|+++.|++++.+++++++..|+++|.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999999975 5788888899999999999999999999999999999
Q ss_pred HHHH
Q 037142 298 NILK 301 (383)
Q Consensus 298 ~l~~ 301 (383)
+++.
T Consensus 248 ~l~~ 251 (252)
T 4db8_A 248 KLQS 251 (252)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 8864
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=5.8e-27 Score=200.63 Aligned_cols=235 Identities=19% Similarity=0.174 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH-hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH
Q 037142 115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK-LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG 193 (383)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ 193 (383)
.+-+..++..|.+++.. .++...+.+.|++|.++. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.
T Consensus 54 ~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 46788899999999987 567777888999999999 999999999999999999999998888888999999999999
Q ss_pred hhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037142 194 LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGC 273 (383)
Q Consensus 194 ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~ 273 (383)
+|.++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|++++.. +++.+..+.+.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCC
Confidence 998643789999999999999999988888899999999999999999999999999999999976 5688999999999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHH
Q 037142 274 IKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILE 352 (383)
Q Consensus 274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~ 352 (383)
++.|+.+|.+++++++..++++|.+++.........+. ...+.+..++++ .++.++.++ +.+++++|..+++
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987543221100 011345666654 366677565 7899999999999
Q ss_pred HhcCCCC
Q 037142 353 TYWCGRV 359 (383)
Q Consensus 353 ~~~~~~~ 359 (383)
+||.+++
T Consensus 284 ~~f~~~~ 290 (296)
T 1xqr_A 284 TCFSSPA 290 (296)
T ss_dssp HHCC---
T ss_pred HHcCCCC
Confidence 9997654
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=6e-25 Score=181.12 Aligned_cols=200 Identities=39% Similarity=0.551 Sum_probs=185.6
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
..+..+.+..++++++++++..++++|.+++.. +++....+.+.|+++.++.+|+++++.++..++++|++++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 367889999999999999999999999999987 6788888999999999999999999999999999999999888878
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
.+.+.+.|+++.++.++.++ ++.++..++++|+|++.+++.....+++.|+++.|+.++.++++.++..|+++|.|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88889999999999999999 99999999999999999998888899999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
. +++....+.+.|+++.|++++.+++++++..|+++|.++..
T Consensus 168 ~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 G-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp S-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred C-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 6 57788888899999999999999999999999999998863
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=1.3e-24 Score=179.03 Aligned_cols=200 Identities=31% Similarity=0.430 Sum_probs=180.5
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-
Q 037142 14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP- 92 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~- 92 (383)
...|..+.|..+|++++++++..|+++|.+++..+++.+..+.+.|+++.|+++| +++++.++..++++|++++.+.+
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcH
Confidence 4568899999999999999999999999999988889999999999999999999 67799999999999999997653
Q ss_pred CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
........++++.++.+++++++.++..++++|.+++.. ..+....+.+.|+++.|+.+++++++.++..++++|++++
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 334445589999999999999999999999999999987 6777778889999999999999999999999999999999
Q ss_pred cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
..++.....+.+.|+++.|+.++.+. ++.+++.|+++|.+++.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 98777778888999999999999998 99999999999999974
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-23 Score=194.38 Aligned_cols=322 Identities=12% Similarity=0.090 Sum_probs=252.0
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC-
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI- 95 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~- 95 (383)
..+.+.++|.+++.+.+..|++.|..++.+. +.++.+.+. |+++.|+.+++...+..+..-++.+|.|++...+...
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 4567788888777677999999999998764 777777765 6699999999545678899999999999998654210
Q ss_pred --------------------------------------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142 96 --------------------------------------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137 (383)
Q Consensus 96 --------------------------------------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (383)
.....|++|.|..++.++++.+++.++|+|.+++.. .+..
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R 491 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFI 491 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHH
Confidence 112268999999999999999999999999999976 7788
Q ss_pred HHHHHhCcHHHHHHhcCCCChh---hHHHHHHHHhhhhcCCC-cccc-ceecCCChHHHHHhhcc-ccch----------
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQS---VLTQALHTVGNIARGDY-SQTL-YIINCGALPYLLGLLID-NHKT---------- 201 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~---v~~~a~~~L~~l~~~~~-~~~~-~l~~~~~i~~l~~ll~~-~~~~---------- 201 (383)
..+.+.|+++.|+.++.+.... .+..|+.+|.+++...+ ...- ...-.|++++|+.+|.. +...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 8899999999999999886543 88999999999984433 2110 00113899999999983 2111
Q ss_pred --hHHHHHHHHHHHHhcCC----HHHHHHHHhc-CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH-HHHHHc--
Q 037142 202 --SIKNYACWIISNITAGN----REQIQAVIDA-GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI-KYLERE-- 271 (383)
Q Consensus 202 --~~~~~a~~~l~nl~~~~----~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~l~~~-- 271 (383)
.-+.+|+.+|.|++..+ ++.+..++.. |+++.|..++.+++..+|+.|+++++|++.+ ++.+ +.+...
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~ 649 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAKFFNLEN 649 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSS
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcC
Confidence 12779999999999876 3456778874 9999999999999999999999999999975 3443 233321
Q ss_pred ----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC--CCHHHHH
Q 037142 272 ----GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH--DNYEIHE 345 (383)
Q Consensus 272 ----~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~ 345 (383)
+.++.|+.+++.+|.+++..|.++|.++....+.. ...++...++++.+.+++.. ++++++.
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~ 717 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQIDDIELRQ 717 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHTTTCHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhccCCCHHHHH
Confidence 23789999999999999999999999997543321 23334445899999999888 8999999
Q ss_pred HHHHHHHHhcC
Q 037142 346 KSAKILETYWC 356 (383)
Q Consensus 346 ~a~~~l~~~~~ 356 (383)
++..++.++++
T Consensus 718 R~~~~l~NL~~ 728 (778)
T 3opb_A 718 RLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.3e-22 Score=184.46 Aligned_cols=354 Identities=15% Similarity=0.086 Sum_probs=270.0
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 12 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
.+...|..+.|.+.+.+......+.+++-+.+.++.+..+|+.+.+ +.++.|.+.++ + ..++..|+-+|..+....
T Consensus 250 lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~-~~~~~L~~~l~-~--~~ir~lAavvL~KL~~~~ 325 (778)
T 3opb_A 250 IFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE-NYLQLLERSLN-V--EDVQIYSALVLVKTWSFT 325 (778)
T ss_dssp HHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH-HHHHHHHHHTT-S--GGGHHHHHHHHHHHTGGG
T ss_pred HHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH-hHHHHHHHHhc-c--HHHHHHHHHHHHHHhcCC
Confidence 3445688888888887655555667777777777777888888854 55788999884 3 578888888888887654
Q ss_pred CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhh
Q 037142 92 PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGN 170 (383)
Q Consensus 92 ~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~ 170 (383)
.. .........+.+.+.+.+++.+-++.+++.|.+++.. +........+.++++.|+.+++. ++..+..-++.+|.|
T Consensus 326 ~~-~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~N 403 (778)
T 3opb_A 326 KL-TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMAN 403 (778)
T ss_dssp TC-TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHH
T ss_pred CC-CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 22 2233456888899999887777799999999999987 44343334445779999999995 788899999999999
Q ss_pred hhcCCCc--------------------------------------cccceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142 171 IARGDYS--------------------------------------QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 171 l~~~~~~--------------------------------------~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
++...+. +...+.+.|+++.|+.++.+. ++.++..++++|.
T Consensus 404 Lt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~ 482 (778)
T 3opb_A 404 LSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIY 482 (778)
T ss_dssp TTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHH
T ss_pred hcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9975442 234567789999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHhcCChHHHHHHhhcCchh---HHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCC-CCH-
Q 037142 213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFY---IKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCDLLLC-PDP- 286 (383)
Q Consensus 213 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~-~~~- 286 (383)
|++.. ++.+..+++.|+++.|+.++.+.... .|..|+.+|++++...++...-.-.. .+++++|+++|.. ++.
T Consensus 483 nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 483 NITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp HHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred HHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence 99754 68899999999999999999887544 89999999999997666665321001 3789999999983 221
Q ss_pred -----------HH-HHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH-hccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037142 287 -----------QI-VTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE-AKGLEKIENLQRHDNYEIHEKSAKILET 353 (383)
Q Consensus 287 -----------~v-~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 353 (383)
.. +..|+.||.|++...++.. ...++.+.+ .|+++.|++++.+++..|++.|.+++.+
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~---------E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDG---------EEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHH---------HHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccc---------hHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12 6789999999998653210 123344455 5999999999999999999999999999
Q ss_pred hcCCCCC---C--------------CCcccccccccccchhhhccC
Q 037142 354 YWCGRVV---G--------------PQPGLLYAGNEENEEEDALGV 382 (383)
Q Consensus 354 ~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~ 382 (383)
+....+. . ++..++..+++..|+.+++++
T Consensus 633 L~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 633 MMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp HHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8876642 0 245667888899999988764
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1.4e-22 Score=173.41 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=155.2
Q ss_pred ChHHHHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142 6 TLEDKKAVVDHGAVPIFVK-LLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL 84 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L 84 (383)
+.++.+.+++.|+++.|+. +|++++++++..|+|+|++++.+++.+++.+++.|++++|+++|.++++..+++.|+|+|
T Consensus 70 ~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~AL 149 (296)
T 1xqr_A 70 NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149 (296)
T ss_dssp SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHH
Confidence 4578889999999999999 999999999999999999999999999999999999999999996556889999999999
Q ss_pred HhhcCCCCC-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142 85 SNLCGGKPR-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ 163 (383)
Q Consensus 85 ~~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~ 163 (383)
+|++.+.+. .......+++|.|+.++++++..++..++|+|.+++.+ .++.+..+.+.|+++.|+.+|.++++.++..
T Consensus 150 snl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~ 228 (296)
T 1xqr_A 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEH 228 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHH
Confidence 999987633 23344478999999999999999999999999999988 7788899999999999999999999999999
Q ss_pred HHHHHhhhhcCCC
Q 037142 164 ALHTVGNIARGDY 176 (383)
Q Consensus 164 a~~~L~~l~~~~~ 176 (383)
++++|++++...+
T Consensus 229 al~aL~~l~~~~~ 241 (296)
T 1xqr_A 229 VLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCh
Confidence 9999999997744
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=156.75 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=166.4
Q ss_pred ChHHHHHhhCCCCh--HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCC
Q 037142 18 AVPIFVKLLASPSD--DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRP 94 (383)
Q Consensus 18 ~i~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~ 94 (383)
.+|.++++|.++++ +++..|+++|.+++..+++.+..+.+.|++|+|+++| +++++++++.|+|+|.||+.++ ..+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999888 8999999999999988889999999999999999999 6789999999999999999865 344
Q ss_pred ChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC----------------CCC
Q 037142 95 IFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG----------------HPS 157 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~----------------~~~ 157 (383)
......|++|.|++++. +.+.++++.++.+|++|+.. +.....+.+. .++.|++++. ..+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 55566899999999998 57899999999999999976 4555666664 6899988763 136
Q ss_pred hhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccc-----cchhHHHHHHHHHHHHhcC
Q 037142 158 QSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDN-----HKTSIKNYACWIISNITAG 217 (383)
Q Consensus 158 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~-----~~~~~~~~a~~~l~nl~~~ 217 (383)
+.++..+..+|+||+..+++..+.+.+. |+++.|+.+++.. .+...++.++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998776677777765 6789999998742 2567899999999999754
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=150.11 Aligned_cols=197 Identities=17% Similarity=0.191 Sum_probs=168.2
Q ss_pred hchhHHHHHhhccCCH--HHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 100 RPCLPTLAQLVHSNDE--HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
.-.+|.+++++.++++ +++..+++++.+++.+ +++....+.+.|++|.|+++|+++++.++..|+++|+||+..+++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 3468999999999887 8999999999999987 677888899999999999999999999999999999999988777
Q ss_pred cccceecCCChHHHHHhhcc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---c-------------
Q 037142 178 QTLYIINCGALPYLLGLLID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ---N------------- 240 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~------------- 240 (383)
....+.+.|+++.|+.+|.+ . +..+++.++.+|.|++... ..+..+.+. +++.|++++. +
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence 88889999999999999984 5 8899999999999998754 556666664 6888887653 1
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 037142 241 AVFYIKKEAAWAISNATFGGTHEQIKYLERE-GCIKPLCDLLLC------PDPQIVTVCLKALENILK 301 (383)
Q Consensus 241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~ 301 (383)
.+..++..|..+|.|++.. +++.++.+.+. |+++.|+.+++. .+...++.|+.+|.||.-
T Consensus 163 ~~~~v~~na~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 2568999999999999986 46888888875 678999999874 255789999999999863
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.74 E-value=4.7e-16 Score=133.66 Aligned_cols=259 Identities=16% Similarity=0.142 Sum_probs=200.1
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 12 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
...+.+.++.|++.|.++++.+|..|+++|+++.. .+.++.|+.++ +++++.++..++++|+.+....
T Consensus 18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~ 85 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFC-SDKNYIRRDIGAFILGQIKICK 85 (280)
T ss_dssp HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHH-cCCCHHHHHHHHHHHHHhcccc
Confidence 34567899999999999999999999999999872 13478899999 6889999999999999987532
Q ss_pred CCCChhhhhchhHHHHH-hhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142 92 PRPIFDQVRPCLPTLAQ-LVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170 (383)
Q Consensus 92 ~~~~~~~~~~~i~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~ 170 (383)
. ....+++.+.+ +++++++.++..++++|..+... ...... ..++.+...+.++++.++..++.+|+.
T Consensus 86 ~-----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~-~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 86 K-----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKK-NPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp T-----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred c-----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 1 12335555553 56788999999999999999854 222111 357889999999999999999999998
Q ss_pred hhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHH
Q 037142 171 IARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAA 250 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 250 (383)
+.. .+.++.|..++.++ ++.+|..++++|+.+....+ ..++.|..++.++++.+|..|+
T Consensus 155 ~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 155 IND-----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp C--------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHH
T ss_pred cCC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHH
Confidence 753 24789999999998 99999999999999864443 2467788899999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHH
Q 037142 251 WAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE 330 (383)
Q Consensus 251 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 330 (383)
++|+++.. ...++.|...+++++ ++..+.++|..+-. ...++
T Consensus 214 ~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------------------~~~~~ 255 (280)
T 1oyz_A 214 IGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------------------KTLLP 255 (280)
T ss_dssp HHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------------------GGGHH
T ss_pred HHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------------------hhhhH
Confidence 99999862 236788888887654 88888888876631 12356
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHH
Q 037142 331 KIENLQR-HDNYEIHEKSAKILE 352 (383)
Q Consensus 331 ~L~~l~~-~~~~~v~~~a~~~l~ 352 (383)
.|.+++. ++++++...+.+.+.
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcHHHHHHHHHhh
Confidence 6666654 567777777776654
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.70 E-value=4.3e-16 Score=154.60 Aligned_cols=319 Identities=13% Similarity=0.141 Sum_probs=227.5
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHH-HH---hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDL-VL---GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~-~~---~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~ 92 (383)
++++.|++.+.++++.+++.++.+|+.++.+.+..... .. -..+++.+++.+ ++++..++..|++++.++....+
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhccc
Confidence 47888899999999999999999999998643322110 00 013456677777 57789999999999998886543
Q ss_pred CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
.........+++.+.+++.+++++++..++++|..++.. .++......+ ++++.+...++++++.++..++.++..++
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~-~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV-RMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-CHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 222223357889999999999999999999999999986 4443333333 37888889999999999999999999998
Q ss_pred cCCCccccceecC---CChHHHHHhh-----------cc--c--------cchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 037142 173 RGDYSQTLYIINC---GALPYLLGLL-----------ID--N--------HKTSIKNYACWIISNITAGNREQIQAVIDA 228 (383)
Q Consensus 173 ~~~~~~~~~l~~~---~~i~~l~~ll-----------~~--~--------~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~ 228 (383)
.... . ...+.. .+++.++..+ .+ . .+..+|..+..++..++...++ .++ .
T Consensus 285 ~~~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~ 358 (852)
T 4fdd_A 285 EQPI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-P 358 (852)
T ss_dssp TSTT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-H
T ss_pred cchh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-H
Confidence 6432 1 111221 3455666655 22 0 1346788999999988753321 111 2
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhccc
Q 037142 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKN 308 (383)
Q Consensus 229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~ 308 (383)
.+++.+...+.++++.+|..|++++++++.... +..... -.++++.++..++++++.++..+++++.++.........
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 436 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH
Confidence 367778888888999999999999999998753 333322 235789999999999999999999999999976443211
Q ss_pred CcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 309 TDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
. .+ -.+.++.|.+.+.++++.++..|..++..+.....
T Consensus 437 ~--------~~-----~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 437 D--------TY-----LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp T--------TT-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred H--------HH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 0 11 12345677777778899999999999988875543
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=4.1e-15 Score=136.28 Aligned_cols=330 Identities=13% Similarity=0.125 Sum_probs=245.8
Q ss_pred ChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCCC
Q 037142 18 AVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 18 ~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
.|+.|+.-+++ .-.+=|..|+..|..++.+ ++..+. .++++.|+..|+++ .|.++.+.++.+|.++....+...
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 46777777765 5678899999999999864 445554 45589999999765 588999999999988776542210
Q ss_pred -------------------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCch-HHHHHHH-hCcHHHHHHhcC
Q 037142 96 -------------------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND-EIQAVIE-AGVCPRLVKLLG 154 (383)
Q Consensus 96 -------------------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~-~~~i~~l~~~L~ 154 (383)
.....+.++.|+.++++.+..+|.+++.+|..++.. .++ ..+.+.. .++++.|+.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~-r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ-LGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc-CcHHHHHHHHhCcccHHHHHHHHh
Confidence 011257899999999999999999999999999987 444 4455553 489999999999
Q ss_pred CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccch----hHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037142 155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKT----SIKNYACWIISNITAGNREQIQAVIDAGL 230 (383)
Q Consensus 155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~----~~~~~a~~~l~nl~~~~~~~~~~~~~~~~ 230 (383)
++..-++..++..|..++.++.+..+.+.-.|+++.|+.++... .. .+...++.++.|+...++.+...+.+.++
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E-g~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE-GNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc-CCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 99999999999999999999987777666679999999999865 33 67888999999999999888888889999
Q ss_pred hHHHHHHhhcCch------hHHHH---HHHHHHHhcCCC-----CHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHH
Q 037142 231 IGPLVNLLQNAVF------YIKKE---AAWAISNATFGG-----THEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLK 294 (383)
Q Consensus 231 l~~L~~ll~~~~~------~v~~~---a~~~l~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~ 294 (383)
++.|..++..+.. +...+ +..++.-++..+ ++.+...+.+.|+++.|++++... +..++..|+.
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999874321 12222 344455555542 235677888999999999988765 5689999999
Q ss_pred HHHHHHHhchhcccCcCCCC--cccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCC
Q 037142 295 ALENILKVGEAEKNTDTDIG--DVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 295 ~l~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~ 359 (383)
++..+++.....|..+.+.. ..+ ...-.+..|..+.++ +..+++-.|...+..|+.+.+
T Consensus 336 tla~~irgN~~~Q~~fa~~~vp~~~------~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 336 TVSEVIRGCQVNQDYFASVNAPSNP------PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHCEESSSS------CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHhhccCCCCC------CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 99999887665553321000 000 001123334444544 557888888999999988765
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=2e-15 Score=143.54 Aligned_cols=306 Identities=11% Similarity=0.099 Sum_probs=229.0
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
..+++.+.++++++++++|..|+++|+.++...+ +.+.......+++.+..++ +++++.++..++++|+.++..-+
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~-- 356 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG-- 356 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--
Confidence 3567888888988899999999999998885332 2111112235577888888 68889999999999999975321
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
.......++|.+..++++++++++..++.++..++.. ... ... ...++|.+..++.++++.++..++.++..++..
T Consensus 357 ~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~-~~~--~~~-~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 357 KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV-IGI--RQL-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH-SCH--HHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-cCH--HHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 1122356889999999999999999999999988864 221 111 124788899999999999999999999998854
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 254 (383)
.+.. .....+++.+...+.++ +..+|..++.+++.++...+. ......++|.+..++.++++.+|..++++++
T Consensus 433 ~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 433 LGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505 (588)
T ss_dssp HCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred cCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 2211 22335678888999888 899999999999999753211 1123457888888888889999999999999
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN 334 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 334 (383)
.++...+.+ .....+++.|..++++++++++..+++++..+....+.. +......+.|..
T Consensus 506 ~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------~~~~~~~p~l~~ 565 (588)
T 1b3u_A 506 VLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------------TLQSEVKPILEK 565 (588)
T ss_dssp HHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------------HHHHHHHHHHHH
T ss_pred HHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------------hhHHHHHHHHHH
Confidence 998542211 122358999999999999999999999999998653321 112345677888
Q ss_pred HhcCCCHHHHHHHHHHHHHhc
Q 037142 335 LQRHDNYEIHEKSAKILETYW 355 (383)
Q Consensus 335 l~~~~~~~v~~~a~~~l~~~~ 355 (383)
+.++++.+|+..|..++..+-
T Consensus 566 l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 566 LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HTTCSSHHHHHHHHHHHHHTT
T ss_pred HcCCCchhHHHHHHHHHHHhh
Confidence 889999999999999988654
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.68 E-value=2.3e-16 Score=156.49 Aligned_cols=277 Identities=15% Similarity=0.191 Sum_probs=203.7
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+++.|+++++++++++|..|+++|..+....+......+ .++++.++..+ .+++..++..++++|..++...+.....
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 577788888889999999999999988765432111111 24567788888 6788999999999999999865433223
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH---hCcHHHHHHhc-----------CC--------
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE---AGVCPRLVKLL-----------GH-------- 155 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~i~~l~~~L-----------~~-------- 155 (383)
...++++.+..++.+.+++++..+++++..++.. .. . ..... ..++|.++..+ .+
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ-PI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 3467899999999999999999999999999975 21 1 11111 13567777776 23
Q ss_pred ---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142 156 ---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG 232 (383)
Q Consensus 156 ---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~ 232 (383)
++..++..+..+|..++...++. ++. .+++.+...+.++ ++.+|..|++++++++.+.++.... .-.++++
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~ 403 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP-YLPELIP 403 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence 23467889999999998654321 222 4677777888888 9999999999999999887654433 2355788
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142 233 PLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 233 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 306 (383)
.+...+.++++.+|..|+|++++++.......... .-.++++.|+..+.++++.++..|+++|.++++.....
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 99999999999999999999999985311000000 11246888999998899999999999999999876543
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=3.6e-15 Score=136.62 Aligned_cols=288 Identities=13% Similarity=0.141 Sum_probs=222.1
Q ss_pred HhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChH-----------------HHHHHH-hcCChHHHHHHhcCCCC
Q 037142 14 VDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPR-----------------FRDLVL-GEAALIPLLTQLNNHEN 73 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~-----------------~~~~~~-~~g~i~~L~~~L~~~~~ 73 (383)
+-.++++.|+..|+. .|.++...++.+|.++...+++ +.+.++ +.+.++.|+.+| ++.+
T Consensus 57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL-~~~d 135 (651)
T 3grl_A 57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL-EEFD 135 (651)
T ss_dssp HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHT-TCCC
T ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHh-cCcc
Confidence 446789999999975 7899999999999887654322 223333 457799999999 7889
Q ss_pred hhHHHHHHHHHHhhcCCCCCCChhh---hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142 74 LSMKRIATWTLSNLCGGKPRPIFDQ---VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV 150 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~ 150 (383)
..++..++.+|..++...+...+.. ..++++.|+.+|+++...+|..++..|..++.+ +.+..+.+.-.|+++.++
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQklVAFEnaFe~Lf 214 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKIVAFENAFERLL 214 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHhccHHHHH
Confidence 9999999999999998875532222 258999999999999999999999999999998 555555555569999999
Q ss_pred HhcCCCC----hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchh------HHHH---HHHHHHHHhcC
Q 037142 151 KLLGHPS----QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTS------IKNY---ACWIISNITAG 217 (383)
Q Consensus 151 ~~L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~------~~~~---a~~~l~nl~~~ 217 (383)
.++..+. ..+...++.++.+|...+..+...+.+.|+++.|.+++..+ .+. ...+ ++.++.-++..
T Consensus 215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~-~~~~~W~~Qk~~N~~~~L~iIrlLv~~ 293 (651)
T 3grl_A 215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG-DENSGWSAQKVTNLHLMLQLVRVLVSP 293 (651)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC-SCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC-ccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 9998744 37889999999999999988888889999999999999755 221 2222 55666666654
Q ss_pred ------CHHHHHHHHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---------ChHHHHhh
Q 037142 218 ------NREQIQAVIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGGTHEQIKYLEREG---------CIKPLCDL 280 (383)
Q Consensus 218 ------~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~---------~i~~L~~l 280 (383)
...+...+.+.|+++.+++++... ...++.+|..+++.+..+ ++.....+.+.. ++..|+.+
T Consensus 294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg-N~~~Q~~fa~~~vp~~~~~p~li~lL~~~ 372 (651)
T 3grl_A 294 NNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG-CQVNQDYFASVNAPSNPPRPAIVVLLMSM 372 (651)
T ss_dssp TSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHhhccCCCCCCcChHHHHHHHH
Confidence 234566677999999999998765 678999999999999887 466666666543 23334444
Q ss_pred cCCC-CHHHHHHHHHHHHHHHHhchh
Q 037142 281 LLCP-DPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 281 l~~~-~~~v~~~al~~l~~l~~~~~~ 305 (383)
+.+. ..++|..++.++..++.....
T Consensus 373 ~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 373 VNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcccccHHHHHHHHHHHHHHHhCCHH
Confidence 5554 568899999999999876653
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.66 E-value=3.6e-15 Score=141.86 Aligned_cols=306 Identities=12% Similarity=0.066 Sum_probs=226.6
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
.++|.+.++++++++.+|..|+.+|+.++..... ......+++.+++++ +++++.++..++++++.++...+....
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 3667777777777788888888888877742101 112235578888998 678899999999999999876532211
Q ss_pred --hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 97 --DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 97 --~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
.....++|.+..++++.++.++..+++++..++.. -.. .... ..++|.+..++++++++++..++.++..++..
T Consensus 318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~-~~~--~~~~-~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI-LGK--DNTI-EHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH-HCH--HHHH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hhH--hHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 34577899999999999999999999999999854 111 1122 23789999999999999999999999888754
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 254 (383)
.... .....+++.+..++.+. +..+|..++.+++.++..-+. ..+...+++.+..++.+++..+|..|+.+++
T Consensus 394 ~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 394 IGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp SCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred cCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3211 11235678888888887 899999999999998742100 1122346778888888899999999999999
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN 334 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 334 (383)
.++...+++. ....+++.|..++.++++.++..+++++..+....+.. ......++.|..
T Consensus 467 ~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~ 526 (588)
T 1b3u_A 467 KLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLR 526 (588)
T ss_dssp HHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHH
T ss_pred HHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHh
Confidence 9986533322 12358889999998899999999999999998754322 112345688888
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCC
Q 037142 335 LQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 335 l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
++.+++++|+..+...+..++..
T Consensus 527 ~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 527 MAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp GGGCSCHHHHHHHHHHHHHHGGG
T ss_pred hCCCCCchHHHHHHHHHHHHHHH
Confidence 89999999999999999888764
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=2.9e-15 Score=142.12 Aligned_cols=263 Identities=16% Similarity=0.141 Sum_probs=200.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+++.+++++.+++..++..+..++.+++...++.. .-++..+.+.| +++++.++..|+.+++++.. ..
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL-~~~n~~ir~~AL~~L~~i~~------~~ 117 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDC-EDPNPLIRALAVRTMGCIRV------DK 117 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGS-SSSSHHHHHHHHHHHHTCCS------GG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCh------HH
Confidence 46677888888999999999999998886544432 13456777778 67899999999999999863 23
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~ 177 (383)
....+++.+.+++.+.++.+|+.|++++..+... .++... +.++++.+..+|.++++.|+..|+.+|..++..++.
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 5567888899999999999999999999999986 444332 235789999999999999999999999999977654
Q ss_pred cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
....-...+.+..++..+.+. ++..+...+++++.++..++.... .+++.+..++++.++.|+.+|++++..+.
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred ccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 311111224466777777777 889999999999988866554433 34667777888899999999999999997
Q ss_pred CCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 258 FGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 258 ~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
... +++..+.+. .++.+.|+.++. +++.++..++.++..+....+
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 268 ELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp CSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCC
T ss_pred hccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCh
Confidence 431 223333322 346778887764 889999999999999987644
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=1e-14 Score=138.32 Aligned_cols=257 Identities=16% Similarity=0.135 Sum_probs=172.1
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-Chh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-IFD 97 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~ 97 (383)
++.+.+++.++++.+|..|++++.++...+++... +.+.++.+..+| +++++.++..|+++|..++.+.+.. ...
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~ 198 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLD 198 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchh
Confidence 45688899999999999999999999876554322 235678899999 6889999999999999999887543 233
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC---
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG--- 174 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~--- 174 (383)
...+.++.+++.+.+.++-.+..++.++..++.. ++... ..+++.+..++++.++.|+..|++++..+...
T Consensus 199 l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 199 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred ccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 3456677888888888888888899999888855 33222 23678889999999999999999999998742
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 254 (383)
+++..+.+. ..+.+.++.++ ++ ++.+|..++..++.++...++.... .+..+. .+.+.+..+|..|++++.
T Consensus 273 ~~~~~~~~~-~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 273 DSDYYNMLL-KKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp TTBSHHHHH-HHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHHHHHHHH
Confidence 222222111 23456666555 45 8899999999999987543221110 011111 111223556666666666
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
+++...+ ... +++.|...+.+.+.+++..+++++.+++..
T Consensus 344 ~l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 344 RLASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp HTCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 6654322 222 344455555555666666666666665543
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.59 E-value=8.2e-14 Score=114.27 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=159.4
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
.+.++.|++.|.++++.+|..|++.|+.+.. .+.++.|++++ .+++..++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4678999999999999999999999998864 25688999999 67899999999999999863
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
...++.+..++.++++.++..++++|..+... +.++.+..++.++++.++..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 34789999999999999999999999998743 367899999999999999999999999842
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 255 (383)
...++.|..++.++ ++.++..++.+|+.+.. ...++.|..++.++++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 24688999999888 99999999999999842 2356778888999999999999999999
Q ss_pred hcCCC
Q 037142 256 ATFGG 260 (383)
Q Consensus 256 l~~~~ 260 (383)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 87653
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.59 E-value=1e-13 Score=131.90 Aligned_cols=291 Identities=14% Similarity=0.104 Sum_probs=221.2
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
....++++.+++.+.+..+.-.+..++..+++..... +..+.+-| +++++.++..|+++++++... ..
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~-----in~l~kDL-~~~n~~vr~lAL~~L~~i~~~------~~ 139 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLM-----TNCIKNDL-NHSTQFVQGLALCTLGCMGSS------EM 139 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHH-SCSSSHHHHHHHHHHHHHCCH------HH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHH-----HHHHHHhc-CCCCHhHHHHHHHHHHhcCCH------HH
Confidence 4455666777888888888888888887766543333 56788888 688999999999999999842 34
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
...+++.+.+++.+.++.+|+.|+.++.++... .++... ++++.+..+|.++|+.|+..|+.+|..++..+++.
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 577899999999999999999999999999986 444332 47888899999999999999999999998765432
Q ss_pred ccceecCCChHHHHHhhcc--------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-----
Q 037142 179 TLYIINCGALPYLLGLLID--------------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ----- 239 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~--------------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~----- 239 (383)
...+. ..++.++.+|.+ ..++..+...+.+++.++..++... ..+.+.|..++.
T Consensus 214 ~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 214 LAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETS 286 (618)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCS
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccc
Confidence 11121 567777776653 1278899999999999998776543 335556666653
Q ss_pred -cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccH
Q 037142 240 -NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQ 318 (383)
Q Consensus 240 -~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 318 (383)
+.+..+..+|+.++..+... +.... ..++.|..++.++++.++..|+.+|..+....+..
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~--~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~------------ 347 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSE--SGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA------------ 347 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCC--HHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH------------
T ss_pred cchHHHHHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH------------
Confidence 24668999999999998643 33222 25778888899999999999999999998753321
Q ss_pred HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 319 YAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 319 ~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
+. .....+..++.+++..|+.+|.+++..+....+
T Consensus 348 ----~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 348 ----VQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp ----HG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred ----HH--HHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence 21 234567788889999999999999998888765
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.58 E-value=2.5e-13 Score=110.51 Aligned_cols=185 Identities=22% Similarity=0.259 Sum_probs=159.0
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF 96 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (383)
+..+.++++|+++++.+|..|+++|+.+.. .+.++.|++.| .+++..++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 567889999999999999999999998763 24588999999 68899999999999999863
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
...++.+..++.++++.++..++++|..+... ..++.+..++.++++.++..++++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 24789999999999999999999999998643 367889999999999999999999999842
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
...++.|..++.++ ++.++..++++|+.+. . ...++.|..++.++++.+|..|..+|..+
T Consensus 137 --------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--S---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--c---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 24688999999988 9999999999999983 2 22567788888999999999999999987
Q ss_pred cC
Q 037142 257 TF 258 (383)
Q Consensus 257 ~~ 258 (383)
..
T Consensus 197 ~~ 198 (201)
T 3ltj_A 197 KS 198 (201)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.56 E-value=1.3e-13 Score=118.38 Aligned_cols=229 Identities=13% Similarity=0.069 Sum_probs=176.3
Q ss_pred hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchH
Q 037142 57 GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136 (383)
Q Consensus 57 ~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 136 (383)
..+.++.|+..| .++++.++..|+++|+++.. ...++.+..++.++++.++..++++|..+... . ..
T Consensus 21 ~~~~i~~L~~~L-~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~-~~ 87 (280)
T 1oyz_A 21 KKLNDDELFRLL-DDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-K-KC 87 (280)
T ss_dssp HTSCHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T-TT
T ss_pred HHhhHHHHHHHH-HcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-c-cc
Confidence 457799999999 67899999999999999873 35889999999999999999999999998754 2 22
Q ss_pred HHHHHHhCcHHHHH-HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 137 IQAVIEAGVCPRLV-KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 137 ~~~~~~~~~i~~l~-~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
... +++.+. .++.++++.++..++++|+.+....+.. ....++.+...+.++ ++.+|..++++|+++.
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK-STNVRRATAFAISVIN 156 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC-
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcC
Confidence 111 344454 3467889999999999999997544321 124688899999998 9999999999999875
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 037142 216 AGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA 295 (383)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~ 295 (383)
. ...++.|..++.++++.+|..|+++|+.+... ++ ..++.|..+++++++.++..++++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~---------~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS---------DIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH---------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH---------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3 35889999999999999999999999998533 22 246788889999999999999999
Q ss_pred HHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 296 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
|.++-. ...++.|..++.+++ ++..+...+..+-.
T Consensus 216 L~~~~~------------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 216 LSYRKD------------------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHTTC------------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHHhCC------------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 987641 123455555555443 77777777776643
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.54 E-value=3.8e-13 Score=110.31 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=158.0
Q ss_pred cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142 58 EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137 (383)
Q Consensus 58 ~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (383)
.+.++.|+..| ++++..++..+++.|+.+.. ...++.|.+++.++++.++..++++|..+...
T Consensus 18 ~~~~~~L~~~L-~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------ 80 (211)
T 3ltm_A 18 PEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------ 80 (211)
T ss_dssp GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------
T ss_pred HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence 35689999999 68899999999999998764 35889999999999999999999999998743
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~ 217 (383)
+.++.++..|.++++.++..++.+|+.+.. ...++.|..++.++ ++.++..++++|+.+..
T Consensus 81 ------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 81 ------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-
Confidence 367899999999999999999999998852 24688999999888 99999999999999842
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297 (383)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~ 297 (383)
...++.|..++.++++.+|..|+++|+.+.. + ..++.|..+++++++.++..|..+|.
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3468889999999999999999999999953 1 24667788888899999999999999
Q ss_pred HHHHhch
Q 037142 298 NILKVGE 304 (383)
Q Consensus 298 ~l~~~~~ 304 (383)
++.....
T Consensus 200 ~~~~~~~ 206 (211)
T 3ltm_A 200 THKSFNH 206 (211)
T ss_dssp C------
T ss_pred hcCCCCC
Confidence 8876544
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=1.6e-13 Score=136.47 Aligned_cols=316 Identities=13% Similarity=0.175 Sum_probs=212.2
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC--C
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR--P 94 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~--~ 94 (383)
+++.+.+.+.+.++.+|+.|+++++.++.... +.....+ ..+++.++..+ .++++.++..++|++++++...+. .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 44555666778889999999999999997642 3222222 24678888888 677899999999999999865311 1
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC---chHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHh
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK---NDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVG 169 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~ 169 (383)
.......+++.+++.+.++ +.++..+++++.+++.... ......... .+++.++..+.+. ++.++..++.+++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~-~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP-ALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH-HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH-HHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 2234577899999998876 8999999999999886411 122222222 3678888888853 3789999999999
Q ss_pred hhhcCCCccccceecCCChHHHHHhhcc--------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142 170 NIARGDYSQTLYIINCGALPYLLGLLID--------------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235 (383)
Q Consensus 170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~--------------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~ 235 (383)
.++...+......+. .+++.++..+.. .....++..++.++++++...+...... -..+++.+.
T Consensus 526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~ 603 (861)
T 2bpt_A 526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFF 603 (861)
T ss_dssp HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHH
T ss_pred HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHH
Confidence 998765543222222 345555555542 1134577889999999886443321111 124667777
Q ss_pred HHhhcCch-hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCC
Q 037142 236 NLLQNAVF-YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIG 314 (383)
Q Consensus 236 ~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 314 (383)
..+.+.+. .++..++.+++.++.........++-. +++.+...+.+++++++..++.++..++...+..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-------- 673 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSLEED-------- 673 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--------
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh--------
Confidence 77877766 899999999999876533233333333 7888999888888899999999999998765432
Q ss_pred cccHHHHHHHHhccHHHHHHHhcCCC--HHHHHHHHHHHHHhc
Q 037142 315 DVNQYAQLVEEAKGLEKIENLQRHDN--YEIHEKSAKILETYW 355 (383)
Q Consensus 315 ~~~~~~~~l~~~~~~~~L~~l~~~~~--~~v~~~a~~~l~~~~ 355 (383)
..++.. ..++.+.+.+.+++ .+++..+..++..+.
T Consensus 674 -~~~~~~-----~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 674 -FRRYSD-----AMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp -GHHHHH-----HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred -ccchHH-----HHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 111222 22455555555554 667777766664443
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.51 E-value=8.8e-13 Score=107.20 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=156.7
Q ss_pred CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
+..+.+++.| ++++..++..++++|+.+.. ...++.|.+++.++++.++..++++|..+...
T Consensus 14 ~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 14 EKVEMYIKNL-QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred cchHHHHHHh-cCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 4468899999 78899999999999998764 24789999999999999999999999988632
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
..++.+...|.++++.++..++++|+.+.. ...++.+..++.++ ++.+|..++++|+.+..
T Consensus 76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC--
Confidence 367899999999999999999999998742 24688899999888 99999999999999853
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 037142 219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN 298 (383)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~ 298 (383)
...++.|..++.++++.+|..|+++|+.+.. ++ .++.|..+++++++.++..|..+|.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---------HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---------HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3578889999999999999999999999942 22 46677778888999999999999876
Q ss_pred HH
Q 037142 299 IL 300 (383)
Q Consensus 299 l~ 300 (383)
+-
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.51 E-value=2.8e-13 Score=124.79 Aligned_cols=315 Identities=12% Similarity=0.060 Sum_probs=220.0
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCC--ChhHHHHHHHHHHhhcCCC-CCC
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHE--NLSMKRIATWTLSNLCGGK-PRP 94 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~--~~~~~~~a~~~L~~l~~~~-~~~ 94 (383)
-..+++.|.++++.+ ..++.+++.++... +.. .-.+.++.|++.+ +++ +..++..++.+|..++.+. +..
T Consensus 92 k~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (462)
T 1ibr_B 92 KNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (462)
T ss_dssp HHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence 345677788877788 88899999988532 110 1136688899999 455 8899999999999999754 222
Q ss_pred ChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142 95 IFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l 171 (383)
.......+++.+.+.+.+. ++.++..+++++.++... ..+... .....-+++.+...+.++++.++..++.+|..+
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF-TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT-THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2233467888999999887 799999999999997754 222111 111111466777788889999999999999999
Q ss_pred hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHH-----------------HHH---hcCCh
Q 037142 172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ-----------------AVI---DAGLI 231 (383)
Q Consensus 172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~-----------------~~~---~~~~l 231 (383)
+...+......+..++++.++..+.+. ++.++..++..+..++........ .++ -..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence 976654333233326777788888777 899999999999888753210000 000 02345
Q ss_pred HHHHHHhhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 232 GPLVNLLQN-------AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 232 ~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
|.++..+.. .+..+|..|+.+|..++...+..... .+++.+...+.++++.++..++.++..++....
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 666666643 24579999999999998654322222 367788888899999999999999999987433
Q ss_pred hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.... ...+ ...++.+..++.++++.|+..|..++.++...-.
T Consensus 399 ~~~~-----------~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 399 PSQL-----------KPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TTTT-----------CTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHH-----------HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 1110 0011 3467888899999999999999999998876543
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.49 E-value=1.5e-13 Score=126.58 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=195.9
Q ss_pred CChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCC
Q 037142 17 GAVPIFVKLLASP--SDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 17 g~i~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~ 92 (383)
++++.|++.+.++ ++.++..|+.+|+.++.+. ++...... ..+++.++..+.+.. +..++..++++++++.....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788889999887 8999999999999998632 22111111 135677888884332 78999999999999764321
Q ss_pred -C-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142 93 -R-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170 (383)
Q Consensus 93 -~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~ 170 (383)
. ........+++.+...+.+.+++++..+++++..++.. ..+........++++.++..+++.++.++..++..+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 0 01111123577777778888999999999999999976 33322222221577888888888999999999999988
Q ss_pred hhcCCC-----------------ccccceec---CCChHHHHHhhccc------cchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 171 IARGDY-----------------SQTLYIIN---CGALPYLLGLLIDN------HKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 171 l~~~~~-----------------~~~~~l~~---~~~i~~l~~ll~~~------~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
++.... .....+.+ ..+++.++..+... .+..+|..|..++..++...++ .
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~ 362 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---D 362 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---T
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---H
Confidence 875420 00000111 23455566666432 1457899999999998864332 1
Q ss_pred HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++ ..+++.+...+.++++.+|..|+.+++.++....++.....+ ..+++.++..+.++++.++..|+++|.+++....
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 11 246677788888899999999999999999864422221111 4588999999999999999999999999998654
Q ss_pred h
Q 037142 305 A 305 (383)
Q Consensus 305 ~ 305 (383)
.
T Consensus 441 ~ 441 (462)
T 1ibr_B 441 E 441 (462)
T ss_dssp G
T ss_pred c
Confidence 4
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.48 E-value=1.3e-12 Score=124.44 Aligned_cols=257 Identities=15% Similarity=0.183 Sum_probs=187.6
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
++..|.+-|.++++.+|..|+++|+++.. ++... .+++.+.+++ .++++.+++.|+.++.++....| .
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p----~ 175 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVP----E 175 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCG----G
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCh----H
Confidence 45778888899999999999999999983 34333 3467888999 67899999999999999998654 2
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---------------CChhhHH
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---------------PSQSVLT 162 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---------------~~~~v~~ 162 (383)
...+.++.+..++.+.++.++..+++++..++.. +++....+ . .++|.++..|.+ .++..+.
T Consensus 176 ~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~-~~~~~~~~-~-~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 176 LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER-SPDMLAHF-R-KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS-HHHHHHHH-H-TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh-ChHHHHHH-H-HHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 3457888899999999999999999999999976 33322222 2 466777766542 4677778
Q ss_pred HHHHHHhhhhcCCCccccceec-------------------------------------CCChHHHHHhhccccchhHHH
Q 037142 163 QALHTVGNIARGDYSQTLYIIN-------------------------------------CGALPYLLGLLIDNHKTSIKN 205 (383)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~l~~-------------------------------------~~~i~~l~~ll~~~~~~~~~~ 205 (383)
.++++|+.++..++...+.+.+ ..+++.+..++.+. ++.+|.
T Consensus 253 ~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~ 331 (618)
T 1w63_A 253 RILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRY 331 (618)
T ss_dssp HHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHH
Confidence 8888888877654321111000 01355666777777 888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC
Q 037142 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD 285 (383)
Q Consensus 206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 285 (383)
.|+.+++.++...+... ....+.++.++.+++..+|..|..++..++...+ ... +++.|...+.+.+
T Consensus 332 ~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n---v~~-----iv~eL~~~l~~~d 398 (618)
T 1w63_A 332 VALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN---IRG-----MMKELLYFLDSCE 398 (618)
T ss_dssp HHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS---THH-----HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc---HHH-----HHHHHHHHHHhCC
Confidence 88888888876443322 2245678888888899999999999999987643 222 3456666666788
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 037142 286 PQIVTVCLKALENILKVG 303 (383)
Q Consensus 286 ~~v~~~al~~l~~l~~~~ 303 (383)
.+++..++.+|..++...
T Consensus 399 ~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999998753
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.46 E-value=8.4e-12 Score=124.29 Aligned_cols=321 Identities=12% Similarity=0.087 Sum_probs=218.0
Q ss_pred CChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCC
Q 037142 17 GAVPIFVKLLASP--SDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKP 92 (383)
Q Consensus 17 g~i~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~ 92 (383)
.+++.|.+.+.++ ++.++..++.+|+.++... ++..... -..+++.+.+.+.+.. +..++..++.++.+++..-+
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678888899888 8999999999999998532 2211111 1234566777774332 68899999999999875421
Q ss_pred C--CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142 93 R--PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170 (383)
Q Consensus 93 ~--~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~ 170 (383)
. ........+++.+...+.+.+.+++..++.++..++.. ..+.........+++.++..+.+.++.++..++..+..
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 0 01111124678888888888999999999999999976 44444444443688888888889999999999999988
Q ss_pred hhcCCC-----------------ccccceec---CCChHHHHHhhcc------ccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 171 IARGDY-----------------SQTLYIIN---CGALPYLLGLLID------NHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 171 l~~~~~-----------------~~~~~l~~---~~~i~~l~~ll~~------~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
++.... ........ ..+++.++..+.. +.+..+|..+..++..++...++ .
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~ 362 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---G
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---h
Confidence 875320 00000100 2345566666642 11568999999999988753321 1
Q ss_pred HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++ ..+++.+...+.++++.+|..|+++++.++....++...... ..+++.++..+.++++.++..|++++.+++....
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 11 235666777777889999999999999999876544433322 3489999999999999999999999999998754
Q ss_pred hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
..... .+.+. ..++.+...+.++ +.++..|..++..+...
T Consensus 441 ~~~~~------~~~l~------~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 441 EAAIN------DVYLA------PLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GGTSS------TTTHH------HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hhccc------HHHHH------HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 32100 01112 2235555666554 77888888777766643
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.43 E-value=5.3e-12 Score=125.49 Aligned_cols=275 Identities=16% Similarity=0.227 Sum_probs=192.7
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCC------hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAES------PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG 90 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~------~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (383)
.+++.+++.+.++++.+|..++|+++.++... ..+. ..+++.++..+ ++. +.++..+++++.+++..
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-----~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-----PGVVQACLIGL-QDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-----HHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-----HHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999999998531 1111 23467788888 444 88999999999999865
Q ss_pred CC----CCChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---------
Q 037142 91 KP----RPIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--------- 155 (383)
Q Consensus 91 ~~----~~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--------- 155 (383)
.. ..-......+++.+.+.+.+.+ +.++..++.++..++.. ........... ++|.++..+.+
T Consensus 484 ~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~-~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY-ATDTVAETSAS-ISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH-CCGGGHHHHHH-HHHHHHHHHHHHTTSCGGGC
T ss_pred cccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH-cchhhHHHHHH-HHHHHHHHHHHHHhhhcccC
Confidence 32 1112334677888888888544 78999999999999876 33333333332 56666666542
Q ss_pred ------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 037142 156 ------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKT-SIKNYACWIISNITAGNREQIQAVIDA 228 (383)
Q Consensus 156 ------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~-~~~~~a~~~l~nl~~~~~~~~~~~~~~ 228 (383)
....++..++.+|..++...+........ .+++.+...+.+. +. .++..++.+++.++..........+ .
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~ 638 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-E 638 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-H
Confidence 13457788999999998665532222222 4667777778776 56 8999999999998753322222222 3
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhchh
Q 037142 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD--PQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~l~~l~~~~~~ 305 (383)
.+++.+...+.++++.+|..|+.+++.++...+.....++ ..+++.+++.+.+++ ++++..++.++..++...+.
T Consensus 639 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 3788888888888889999999999998865432222222 246778888887654 78999999999999986543
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.42 E-value=1.7e-11 Score=122.03 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=195.2
Q ss_pred CChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCChHHH-HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142 17 GAVPIFVKLLASP--SDDIRMQSVWALGNIAAESPRFR-DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR 93 (383)
Q Consensus 17 g~i~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (383)
.+++.+.+.+.++ ++++|..|++++..++..-.... .......+++.+...+ .+.+.+++..++.++..++...+.
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHH
Confidence 3566677778775 68999999999999875322111 0011112466677777 677889999999999999976543
Q ss_pred CChhhhh-chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc---------------------hHHHHHHHhCcHHHHHH
Q 037142 94 PIFDQVR-PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN---------------------DEIQAVIEAGVCPRLVK 151 (383)
Q Consensus 94 ~~~~~~~-~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~---------------------~~~~~~~~~~~i~~l~~ 151 (383)
.-..... .+++.+...+.+.++.++..++.++..++.. .. ....... ..+++.++.
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~ 328 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE-EMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQ 328 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHH
Confidence 3333344 7889999988888999999999999888753 10 0111111 235777778
Q ss_pred hcC-------CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHH
Q 037142 152 LLG-------HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQ 223 (383)
Q Consensus 152 ~L~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~ 223 (383)
.+. ++++.++..+..++..++...++ .++. .+++.+...+.+. ++.+|..++++++.++.+.. +...
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 775 34578999999999998865432 1222 4566677777777 89999999999999998653 3333
Q ss_pred HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHH--HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHE--QIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
..+ ..+++.++..+.++++.+|..|+|++++++....+. ....+ ..+++.|+..+.++ +.++..+++++.+++.
T Consensus 404 ~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 404 PLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 332 447889999999999999999999999998653211 01111 13677888888774 8899999999999998
Q ss_pred hch
Q 037142 302 VGE 304 (383)
Q Consensus 302 ~~~ 304 (383)
...
T Consensus 480 ~~~ 482 (876)
T 1qgr_A 480 AAY 482 (876)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.37 E-value=2e-10 Score=109.03 Aligned_cols=296 Identities=11% Similarity=0.109 Sum_probs=215.1
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+....++++.+++...+..+.-++..++..+++....+ +..+.+-+ +++++.++..|+.+++++... .
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl-~~~n~~ir~lALr~L~~i~~~------e 142 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDL-ASRNPTFMGLALHCIANVGSR------E 142 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHH-HSCCHHHHHHHHHHHHHHCCH------H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhc-CCCCHHHHHHHHHHhhccCCH------H
Confidence 46677788889999999999999999998777654333 46677778 688999999999999999652 4
Q ss_pred hhhchhHHHHHhh--ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 98 QVRPCLPTLAQLV--HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 98 ~~~~~i~~l~~ll--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
....+++.+.+++ .+.++.+|+.|+.++..+... .++.... .++++.+..+|.++|+.|+..|+.++..++..+
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPM---GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCC---CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCc---hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 5678999999999 889999999999999999986 4443321 368999999999999999999999999998766
Q ss_pred CccccceecCCChHHHH----Hhhccc-c-----------chhHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHh
Q 037142 176 YSQTLYIINCGALPYLL----GLLIDN-H-----------KTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~----~ll~~~-~-----------~~~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll 238 (383)
+.... ..++.++ .++... . ++..+...+..++.++.. +++....+.+ +++.++..+
T Consensus 219 ~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~ 291 (621)
T 2vgl_A 219 PEEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA 291 (621)
T ss_dssp HHHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence 53211 2344444 333221 1 578999999999988864 4455554433 344444332
Q ss_pred ---------hcCc--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcc
Q 037142 239 ---------QNAV--FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307 (383)
Q Consensus 239 ---------~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~ 307 (383)
++.+ ..|..+|+.++..+.. .++.... ++..|..++.++++.++..++.+|..++...+.
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-- 362 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-- 362 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCC--cHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--
Confidence 2223 3888999999999863 3444443 567888999889999999999999999864321
Q ss_pred cCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 037142 308 NTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
...+.. ....+..++. +++..|+.++.+++..+....+
T Consensus 363 ------------~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 363 ------------HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp ------------HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred ------------HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 011221 2345556566 7888888888888888776544
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.27 E-value=7.6e-11 Score=121.52 Aligned_cols=311 Identities=12% Similarity=0.100 Sum_probs=211.7
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP- 94 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~- 94 (383)
.+++.+++.|.++++.+|..|+.+|+.++...++ ... .+++.++..+ .+++..+|..++.+|+.++...+..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3577888999999999999999999999865433 222 2467788888 5677788999999999998654322
Q ss_pred -----ChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 95 -----IFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 95 -----~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
.......++|.+...+. ++++.++..++.++..++.. ..+...... ..+++.++..+.++++.++..++.++
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~-~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR-QGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH-TCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH-hHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 12245789999999998 57899999999999999853 111111111 23678888999999999999999999
Q ss_pred hhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHH
Q 037142 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE 248 (383)
Q Consensus 169 ~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 248 (383)
+.++...++. ++ ..+++.++..+.+..+..++..++.+++.++...+..... .-..+++.+...+.+.++.+|..
T Consensus 200 ~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 200 GHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHH
Confidence 9998655432 22 2468888888876534567888899998887643221111 11457888888888889999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-------------------------------------CCHHHHHH
Q 037142 249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-------------------------------------PDPQIVTV 291 (383)
Q Consensus 249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-------------------------------------~~~~v~~~ 291 (383)
+..++..++.....+...++- .+++.++..+.. ...+++..
T Consensus 275 a~~~l~~l~~~~~~~~~~~l~--~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~ 352 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYPHVS--TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA 352 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHHHHH--HHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHChHHHHHhHH--HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence 999999988764322222221 245555555531 11346777
Q ss_pred HHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142 292 CLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356 (383)
Q Consensus 292 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 356 (383)
|+.++..++...+. .+..++ ...++.+.....+.++.++..+...+..++.
T Consensus 353 A~~~l~~l~~~~~~------------~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHE------------MLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp HHHHHHHHHTTCCT------------THHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchh------------HHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 88888887763221 122222 1234556666677788898888877766553
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=2.5e-10 Score=117.69 Aligned_cols=330 Identities=14% Similarity=0.147 Sum_probs=214.8
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcC------------------------
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNN------------------------ 70 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~------------------------ 70 (383)
..+++.+++.+.+.++++|..++.++..++...++ .+..+ ..+++.+++.+..
T Consensus 254 ~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~ 331 (1230)
T 1u6g_C 254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD 331 (1230)
T ss_dssp TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-----------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccc
Confidence 35788889999888999999999999998864322 11111 1223444443321
Q ss_pred ------------CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC-----
Q 037142 71 ------------HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK----- 133 (383)
Q Consensus 71 ------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~----- 133 (383)
+....++..++.++..++...+..-......++|.+...+.+.+..++..++.++..++....
T Consensus 332 ~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 411 (1230)
T 1u6g_C 332 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW 411 (1230)
T ss_dssp -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc
Confidence 112356888999999998754432234457788888888888889999999998887764200
Q ss_pred -------------chHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc
Q 037142 134 -------------NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK 200 (383)
Q Consensus 134 -------------~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~ 200 (383)
......... .+++.+...++++++.++..++.+++.++...+......+ ..+++.+...+.+. .
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~-~ 488 (1230)
T 1u6g_C 412 LCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDK-S 488 (1230)
T ss_dssp ---------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCS-S
T ss_pred ccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCC-C
Confidence 011122222 3566677779999999999999999999866443222111 24677778888776 4
Q ss_pred h--hHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Q 037142 201 T--SIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTH-------EQIKYLER 270 (383)
Q Consensus 201 ~--~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-------~~~~~l~~ 270 (383)
+ .++..++..+..+... .++.....+ ..+++.++..+.+.+..++..|+.++..++....+ ....++
T Consensus 489 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~-- 565 (1230)
T 1u6g_C 489 SSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI-- 565 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--
T ss_pred CcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--
Confidence 3 8899999999988642 223222222 46899999999988899999999999888732111 111221
Q ss_pred cCChHHHHhhc--CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH-----------------------
Q 037142 271 EGCIKPLCDLL--LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE----------------------- 325 (383)
Q Consensus 271 ~~~i~~L~~ll--~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------- 325 (383)
..+++.++..+ .+.+++++..++.++..++...+..-.. ..+.+...+.+
T Consensus 566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~-----~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~ 640 (1230)
T 1u6g_C 566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-----DLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 640 (1230)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT-----HHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcc
Confidence 12677888888 5678899999999999999876543211 11222222211
Q ss_pred --------hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 326 --------AKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 326 --------~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
...++.|...+.+++..++..+...+..+....
T Consensus 641 ~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 641 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 123445555666778888888887777665443
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.24 E-value=2.9e-09 Score=80.65 Aligned_cols=218 Identities=16% Similarity=0.221 Sum_probs=176.3
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142 14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR 93 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (383)
.+..++..++++|.+.-+.+|.+|+..+..++...++..+.+ +..|+.+++.++..........+++.++...|
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence 344678889999999889999999999999999888877766 46788888778878887788899999997654
Q ss_pred CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142 94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~ 173 (383)
..+.+.+|.+..-..-.++.++.+..++|..+.+. ++.... +++..+..++.++|..-+..++..++.+..
T Consensus 103 ---e~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 ---ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ---HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ---HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 56688999999988999999999999999999987 443333 356788999999998889999999988876
Q ss_pred CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
+...... .++|.+..+|.+. +.-+|..++-+|.+++..++..+..+. .-+.=+.+.+..+++.....|
T Consensus 174 n~~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHH
T ss_pred cCccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHH
Confidence 6554332 6799999999999 999999999999999999988554432 233445667777888777777
Q ss_pred HHhcC
Q 037142 254 SNATF 258 (383)
Q Consensus 254 ~~l~~ 258 (383)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 65
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.23 E-value=9.2e-11 Score=101.83 Aligned_cols=274 Identities=15% Similarity=0.107 Sum_probs=166.3
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142 21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR 100 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 100 (383)
..++++.++|..++....-.+.+++...++. + =++..+.+-+ +++++-++..|+++++++.... ...
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~------m~~ 138 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDM-TGKEDSYRGPAVRALCQITDST------MLQ 138 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTT------THH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHH------HHH
Confidence 3467888999999999999999988763331 1 2356777888 6789999999999999998753 456
Q ss_pred chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccc
Q 037142 101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180 (383)
Q Consensus 101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 180 (383)
.+.+.+.+.+.+.++.+++.|+.+...+... .++.. + ++++.+.+++.+.++.++..|+.++..+...+..
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 7888899999999999999999999999977 44432 2 5889999999999999999999999999765421
Q ss_pred ceecCCChHHHHHhhccc--cchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142 181 YIINCGALPYLLGLLIDN--HKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 181 ~l~~~~~i~~l~~ll~~~--~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 257 (383)
.+..++..+... .++..+...++.++.++..+ +.. ...+++.+..++++.++.|..+|+.+|..+.
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 244445544332 13555556666665555443 222 2446677788888999999999999999986
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc
Q 037142 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR 337 (383)
Q Consensus 258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~ 337 (383)
.. +.... ...+..|..++.++++.++..|+..|..+....+.. +..+ -..+++++.
T Consensus 279 ~~-~~~~~-----~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~----------------v~~~--n~~ie~li~ 334 (355)
T 3tjz_B 279 GC-SAKEL-----APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA----------------VTAC--NLDLENLVT 334 (355)
T ss_dssp ---------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred CC-CHHHH-----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH----------------HHHH--HHHHHHHcc
Confidence 53 11211 236778888888999999999999999888754432 3332 346788999
Q ss_pred CCCHHHHHHHHHHH
Q 037142 338 HDNYEIHEKSAKIL 351 (383)
Q Consensus 338 ~~~~~v~~~a~~~l 351 (383)
++|..|...|...|
T Consensus 335 d~n~sI~t~Aittl 348 (355)
T 3tjz_B 335 DANRSIATLAITTL 348 (355)
T ss_dssp --------------
T ss_pred CCcHhHHHHHHHHh
Confidence 99999888877654
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.16 E-value=6.2e-11 Score=113.94 Aligned_cols=200 Identities=17% Similarity=0.155 Sum_probs=149.3
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91 (383)
Q Consensus 12 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~ 91 (383)
...+..+.| +++.|++++++.|..|+++|++++. ++..+..+...|++..++.-+..+++.+++..|+++|.||+.+.
T Consensus 30 ~~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 30 KLREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 344455555 5567999999999999999999996 67888999999998887654337889999999999999999764
Q ss_pred C--CCChhhhhchhHHHHHhhccCC---------------------HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142 92 P--RPIFDQVRPCLPTLAQLVHSND---------------------EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR 148 (383)
Q Consensus 92 ~--~~~~~~~~~~i~~l~~ll~~~~---------------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~ 148 (383)
. ........++++.|..+++... .++..+++.+|+++|.. ..+....+...+.++.
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-RDEIHEAVATKQTILR 186 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHTCHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHhcccHHH
Confidence 2 1233344788998888875210 24556788999999987 6777777888888999
Q ss_pred HHHhcCC---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh--ccccchhHHHHHHHHHHHHh
Q 037142 149 LVKLLGH---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL--IDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 149 l~~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll--~~~~~~~~~~~a~~~l~nl~ 215 (383)
++..|.+ ...+++..++.+|..++..++...+.+.+.+....+..++ ... +...+..+++++.|+.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 9998854 3467999999999999998887777676665433322222 233 4456778888988874
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.14 E-value=1.7e-08 Score=76.52 Aligned_cols=217 Identities=12% Similarity=0.138 Sum_probs=172.1
Q ss_pred hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCch
Q 037142 57 GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKND 135 (383)
Q Consensus 57 ~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~ 135 (383)
+..++..++.+| ++.-..++.+|+..+.+++...| ......+..|+-+++ ++...+-.....+++.++.- .++
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPE 103 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHH
Confidence 445688899999 66678899999999999998653 345566666777765 56677778889999999976 555
Q ss_pred HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 136 ~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
.+.. .+|.++.-.+-.+++++.....+|..++..++.... +++.-+.++++++ +..=+..++..++.+.
T Consensus 104 ~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 104 LVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCC
T ss_pred HHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHh
Confidence 4443 578999999999999999999999999988885443 6778899999988 8777888888888887
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 037142 216 AGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA 295 (383)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~ 295 (383)
.+..... ..++|.|..++++.+.-||..|+.+|.+++.. ++. .+. ++..-+.-+++.+..++...-.+
T Consensus 173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npk-lRk-----ii~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDK-LRK-----VVIKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHH-HHH-----HHHHHHHHCCCSCHHHHHHHHHH
T ss_pred ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHH-HHH-----HHHHHHHHhcCcHHHHHHHHHHH
Confidence 6665544 45799999999999999999999999999987 344 333 24455666778888899888899
Q ss_pred HHHHHHh
Q 037142 296 LENILKV 302 (383)
Q Consensus 296 l~~l~~~ 302 (383)
|..++-.
T Consensus 241 L~rl~l~ 247 (253)
T 2db0_A 241 ISRLLLL 247 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888753
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.14 E-value=2.1e-09 Score=84.98 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=170.7
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
.+.+..+.+++.+.|+.++.+++.+|..+....+.......++ .+++.++.+++++|..+...|+++|..+..+.+-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 4478889999999999999999999999997623333334444 478999999999999999999999999998877444
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
+.+. .+...+..+++++ ++-++.++.-.++.+--.++ ..++...+..++.+.+.++|..|..++.+++..
T Consensus 111 ~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 4333 2567888888987 99999999999998833221 123456778888889999999999999999876
Q ss_pred C-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh-c
Q 037142 260 G-THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ-R 337 (383)
Q Consensus 260 ~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~ 337 (383)
. +++.. .+++.-+-++++++|+.++..|+.++..++...-.... .+.+. +......++. -
T Consensus 181 S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~-------~~~~~------~~~~~v~~l~~~ 242 (265)
T 3b2a_A 181 SADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENV-------KIELL------KISRIVDGLVYR 242 (265)
T ss_dssp CSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCC-------HHHHH------HHHHHHHHGGGC
T ss_pred cCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhH-------HHHHH------HHHHHHHHHHHh
Confidence 4 22222 24777788899999999999999999999987443221 22222 2345566777 6
Q ss_pred CCCHHHHHHHHHHHHH
Q 037142 338 HDNYEIHEKSAKILET 353 (383)
Q Consensus 338 ~~~~~v~~~a~~~l~~ 353 (383)
.+.+.++.+|-.+.+.
T Consensus 243 ~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 243 EGAPIIRLKAKKVSDL 258 (265)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHH
Confidence 7888898888766554
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.13 E-value=9e-11 Score=112.82 Aligned_cols=197 Identities=14% Similarity=0.054 Sum_probs=150.5
Q ss_pred ChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHH-HHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142 60 ALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPT-LAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138 (383)
Q Consensus 60 ~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~-l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (383)
.+.++++.| +++++..|..|+++|++|+.+...+......++++. +..++.+++.+++..++++|.||+.....+.+.
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 355677889 688999999999999999986544445555677765 566788999999999999999999652356777
Q ss_pred HHHHhCcHHHHHHhcCCCC---------------------hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc
Q 037142 139 AVIEAGVCPRLVKLLGHPS---------------------QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID 197 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~ 197 (383)
.+...|+++.|..+++... ..+...++.+|++|+..+++....+...+.++.++..+.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8888999999998875310 1244567889999998887777777788899999988854
Q ss_pred c--cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh--hcCchhHHHHHHHHHHHhc
Q 037142 198 N--HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL--QNAVFYIKKEAAWAISNAT 257 (383)
Q Consensus 198 ~--~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~l~~l~ 257 (383)
. ....++..++.+|.+++..+++..+.+.+.+....+..++ ...+...+..+++.+.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3 1357999999999999999999998888766543322222 3345556778899998873
No 70
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.13 E-value=8.6e-09 Score=97.86 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=178.7
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-NHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
+..+.+=|.++++.++-.|+++|+++.. ++..+.+ ++.+.+++. .+.++.+++.|+.++.++....|.. .
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~--~ 183 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL--V 183 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG--C
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh--c
Confidence 5667777888999999999999999963 4544433 577888873 3678999999999999999865421 1
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-------------CChhhHHHH
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-------------PSQSVLTQA 164 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-------------~~~~v~~~a 164 (383)
...+.++.+.+++.+.++.++..++.++..++.. .+........ .+++.+..++.. +++..+...
T Consensus 184 ~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~-~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 184 PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK-NPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh-ChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 1147899999999999999999999999999976 3332221111 123333333322 167899999
Q ss_pred HHHHhhhhcCCC-ccccceecCCChHHHHHhh---------ccccch--hHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142 165 LHTVGNIARGDY-SQTLYIINCGALPYLLGLL---------IDNHKT--SIKNYACWIISNITAGNREQIQAVIDAGLIG 232 (383)
Q Consensus 165 ~~~L~~l~~~~~-~~~~~l~~~~~i~~l~~ll---------~~~~~~--~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~ 232 (383)
++.+..++..++ .....+. ++++.++..+ ++. +. .+..+++.++..+. .+++.... ++.
T Consensus 262 l~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~-n~~~aVl~ea~~~i~~l~-~~~~~~~~-----~~~ 332 (621)
T 2vgl_A 262 LRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHS-NAKNAVLFEAISLIIHHD-SEPNLLVR-----ACN 332 (621)
T ss_dssp HHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHHH-----HHH
T ss_pred HHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccccccccc-chHHHHHHHHHHHHHhcC-CcHHHHHH-----HHH
Confidence 999998875332 2221111 1233333222 122 22 77888888888875 33343332 456
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 037142 233 PLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 233 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~ 302 (383)
.|..++.++++.+|..|..+|..++..... ... + ......++.++. ++|..++..++..+..++..
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~-~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFS--HEA-V-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHH-H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHH-H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 788888888999999999999999876421 112 2 236778888888 88999999999999888753
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.04 E-value=1.9e-09 Score=90.08 Aligned_cols=186 Identities=14% Similarity=0.155 Sum_probs=144.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAV 140 (383)
Q Consensus 62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (383)
+.+.+.+ ++.+...|..++..|..++...+.........+++.+...+. +.+..++..++.++..++.. -.+.....
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG-LAKRFSNY 95 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HGGGGHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-HhhhHHHH
Confidence 3477788 688999999999999999876322212224678899999995 99999999999999999965 33333444
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-H
Q 037142 141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-R 219 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~ 219 (383)
... ++|.++..+.+++..++..+..+|..++...+ . ..+++.+...+.+. ++.+|..++..++.+.... +
T Consensus 96 ~~~-ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 ASA-CVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred HHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 443 89999999999999999999999999986432 1 14678888899988 9999999999999965432 2
Q ss_pred H-HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 220 E-QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 220 ~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
+ .....+ ..++|.+..++.+.++++|..|..+++.++..
T Consensus 167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 111222 35789999999999999999999999998754
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=99.04 E-value=6.6e-08 Score=85.88 Aligned_cols=323 Identities=12% Similarity=0.071 Sum_probs=200.8
Q ss_pred HhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCh---HHHHHHHhcCCh-HHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142 14 VDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESP---RFRDLVLGEAAL-IPLLTQLNNHENLSMKRIATWTLSNLC 88 (383)
Q Consensus 14 ~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~~L~~~~~~~~~~~a~~~L~~l~ 88 (383)
.+..++..|+++|.. .++++..+++..+..+..+++ .....+.+..-. ..+........+.-....+..++..++
T Consensus 74 ~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 74 VNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 344577889999985 889999999999999888776 444444444322 223333323334444456666656665
Q ss_pred CCCCCCChhhhhchhH--HHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcC----C----
Q 037142 89 GGKPRPIFDQVRPCLP--TLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLG----H---- 155 (383)
Q Consensus 89 ~~~~~~~~~~~~~~i~--~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~----~---- 155 (383)
...+. ........+. -++..+.. ++...+.-++.++..+.+. ++....+.+. +.++.++..++ +
T Consensus 154 ~~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 154 QNGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp STTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred ccCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 43322 3333344444 34445554 3445566788899988876 4444444432 24566654332 1
Q ss_pred ---------CChhhHHHHHHHHhhhhcCCCccccceecCCCh--HHHHHhhccccchhHHHHHHHHHHHHhcCCH----H
Q 037142 156 ---------PSQSVLTQALHTVGNIARGDYSQTLYIINCGAL--PYLLGLLIDNHKTSIKNYACWIISNITAGNR----E 220 (383)
Q Consensus 156 ---------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i--~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~----~ 220 (383)
...+++..++-+++.++...+ ....+...++. ..++.+++....+++.+-++.++.|+....+ .
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 135678999999999987655 44445555533 5666777766589999999999999987651 2
Q ss_pred HHH-HHHhcCChHHHHHHhhc---CchhHHHHHHHHHHHh-------c--------------CCCCHHHHH-HHHH----
Q 037142 221 QIQ-AVIDAGLIGPLVNLLQN---AVFYIKKEAAWAISNA-------T--------------FGGTHEQIK-YLER---- 270 (383)
Q Consensus 221 ~~~-~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~l-------~--------------~~~~~~~~~-~l~~---- 270 (383)
... .++..++++ +++.|.. .++++....-.....+ + .. +|.+.. .+..
T Consensus 310 ~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se~FW~ENa~ 387 (480)
T 1ho8_A 310 VIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNID 387 (480)
T ss_dssp HHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSG
T ss_pred HHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccchhHHHHHHH
Confidence 223 333455544 4455543 3555554433222111 1 11 111111 1111
Q ss_pred ------cCChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142 271 ------EGCIKPLCDLLLC----------PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN 334 (383)
Q Consensus 271 ------~~~i~~L~~ll~~----------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 334 (383)
..++..|++++++ .|+.+...||.=+..+++..+. -+..+.+.|+.+.+.+
T Consensus 388 kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~ 454 (480)
T 1ho8_A 388 EFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIME 454 (480)
T ss_dssp GGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHH
Confidence 1257788888873 3678888899999999987553 4567889999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhc
Q 037142 335 LQRHDNYEIHEKSAKILETYW 355 (383)
Q Consensus 335 l~~~~~~~v~~~a~~~l~~~~ 355 (383)
|+.|+|++|+..|+.++..+.
T Consensus 455 Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 455 LLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HTSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887754
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.03 E-value=7.3e-08 Score=76.35 Aligned_cols=201 Identities=18% Similarity=0.144 Sum_probs=156.4
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
.+.+..|.++|.+.|+.++..|+.+|..+....+. .+...+ ..+++.++.++ .+.|..+.-.|+.++..+..+.|-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL- 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPM- 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCB-
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCC-
Confidence 35788999999999999999999999999876433 333333 45589999999 788999999999999999998643
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
.......+...+..++.++++-++..++..+..+--- ..... ++..+..++.+.|.+++..++.++.+++..
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~---~~~~~-----V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL---EDSKL-----VRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS---CCCHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc---cchHH-----HHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 3345567888899999999999999999999998322 22222 467888888999999999999999999965
Q ss_pred CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
+.+. . ++ .++++-+-.++++. ++.++..|+.++-.+...+ +..++++.+..++
T Consensus 181 S~D~-~-i~-~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~p-------i~~~~~~~~~~~~ 233 (265)
T 3b2a_A 181 SADS-G-HL-TLILDEIPSLLQND-NEFIVELALDVLEKALSFP-------LLENVKIELLKIS 233 (265)
T ss_dssp CSSC-C-CG-GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSC-------CCSCCHHHHHHHH
T ss_pred cCCH-H-HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCc-------ccHhHHHHHHHHH
Confidence 4321 1 12 25677788999999 9999999999999987653 2244555555544
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.5e-08 Score=84.50 Aligned_cols=192 Identities=9% Similarity=0.056 Sum_probs=143.8
Q ss_pred HHHHhcCCCChhHHHHHHHHHHh-hcCCCCCCC--hhhhhchhHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCc-hHHH
Q 037142 64 LLTQLNNHENLSMKRIATWTLSN-LCGGKPRPI--FDQVRPCLPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKN-DEIQ 138 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~-~~~~ 138 (383)
+.+.+ .+.++.-|..++..|.. ++...+... ......++..+.+.+ ++.+..++..++.++..++.+ -. +...
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~-l~~~~f~ 98 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK-LKTPGFS 98 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HCTTTSC
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh-ccccccc
Confidence 45666 67899999999999999 876533322 223356788899999 688999999999999999975 22 2333
Q ss_pred -HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142 139 -AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG 217 (383)
Q Consensus 139 -~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~ 217 (383)
..... ++|.++..+++..+.|+..+..++-.++...+.....-.-..+++.+...+++. ++.+|..++.+|..++..
T Consensus 99 ~~y~~~-llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 99 KDYVSL-VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence 33332 789999999999999999999999888865432111000114678888999998 999999999999998864
Q ss_pred CH---HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142 218 NR---EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 218 ~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 259 (383)
.+ ......+...++|.+..++.+.+..+|..|..+++.++..
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 43 3233333357899999999999999999999999887643
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.93 E-value=1.7e-09 Score=90.41 Aligned_cols=187 Identities=12% Similarity=0.168 Sum_probs=140.5
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
-+.+.+.+++.++..|..|+..|..+....+.....- -..+++.|...+.++++..++..++.+++.++..-...-...
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3457888899999999999999999886422211000 012356677777337899999999999999996532222234
Q ss_pred hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC-Cc
Q 037142 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD-YS 177 (383)
Q Consensus 99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~-~~ 177 (383)
...++|.++..+.+++..++..+..++..++.. .+ .. .+++.+...+++.++.++..++..|..+.... +.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-TS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-SC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-CC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 477999999999999999999999999999976 32 22 26788999999999999999999999965443 22
Q ss_pred -cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 178 -QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 178 -~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
.....+. .+++.+..++.+. ++.+|..|..+++.++.
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 1111222 5788899999888 99999999999999874
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.83 E-value=1.2e-06 Score=84.71 Aligned_cols=274 Identities=12% Similarity=0.088 Sum_probs=190.7
Q ss_pred ChHHHHHhhC---CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-------ChhHHHHHHHHHHhh
Q 037142 18 AVPIFVKLLA---SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-------NLSMKRIATWTLSNL 87 (383)
Q Consensus 18 ~i~~L~~lL~---~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-------~~~~~~~a~~~L~~l 87 (383)
++..|-+.|. ++++.++.-|+.+|+.+...... + ++..|...|.++. ++.++..|+..|+..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4667777776 56788999999999999876532 1 3566777774322 256788888888887
Q ss_pred cCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHH
Q 037142 88 CGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALH 166 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~ 166 (383)
..... -..+++.|.+++.+++..++..++.+++.+-.+..+. . .+..|++.+ .+.+..++..+..
T Consensus 465 ~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~------ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--E------AIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--H------HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--H------HHHHHHHHHhccCcHHHHHHHHH
Confidence 66542 1247788888888887777778888888764431111 1 223344433 3467789999999
Q ss_pred HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc--CCHHHHHHHHhcCChHHHHHHh-hcCch
Q 037142 167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA--GNREQIQAVIDAGLIGPLVNLL-QNAVF 243 (383)
Q Consensus 167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--~~~~~~~~~~~~~~l~~L~~ll-~~~~~ 243 (383)
+|+.+..+.++ .++.++..|....++.+|..++.+++.-.. ++... ++.|+..+ .+.+.
T Consensus 531 gLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 531 GLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 99988766553 466777777655488999999988876554 44333 33333333 45678
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh-cCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142 244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDL-LLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL 322 (383)
Q Consensus 244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (383)
.+|+.|+.+|+.+..... ..++.+++. .++.++.+|..+..++..+....+.
T Consensus 593 ~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----------------- 645 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----------------- 645 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-----------------
T ss_pred HHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-----------------
Confidence 899999999999876632 245666664 4578999999999999977642221
Q ss_pred HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142 323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG 361 (383)
Q Consensus 323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 361 (383)
...++.|..+.++++..|++.|...|-.......+.
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 113467888899999999999999998777766655
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.82 E-value=4.4e-08 Score=85.06 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=138.3
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD 97 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 97 (383)
++..|.+=++++++-+|-.|+++|+++... +..+.+ .+.+.+.| .+.++.+++.|+.+...+....| .
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l-----~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e 172 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAI-----ERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----D 172 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHH-----HHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----H
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHH-----HHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----H
Confidence 366777778889999999999999999854 333332 46677888 78899999999999999987654 3
Q ss_pred hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHhhhhcC
Q 037142 98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---PSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---~~~~v~~~a~~~L~~l~~~ 174 (383)
...+.++.+..++.+.++.++.+++.++..+... +.. .+..++..+.. .++-.+...++.++.++..
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 4567899999999999999999999999999976 322 12333333333 2566666667777677655
Q ss_pred C-CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 175 D-YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 175 ~-~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
+ +. ....+++.+.+++++. ++.|..+|++++..+...+... -..++..+..++.++++.+|.-|...|
T Consensus 243 d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L 311 (355)
T 3tjz_B 243 EDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTL 311 (355)
T ss_dssp -------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC
T ss_pred cchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 4 22 2235677888889988 9999999999998885422221 133466777788889999999999999
Q ss_pred HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 037142 254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLK 294 (383)
Q Consensus 254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~ 294 (383)
..+... .+...+. .-..+.+++.+++..+.-.|+.
T Consensus 312 ~~l~~~-~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 312 NKVAMK-HPSAVTA-----CNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -----------------------------------------
T ss_pred HHHHHH-CcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence 888865 2333332 4456777888887666554444
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.80 E-value=1.5e-09 Score=81.33 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=95.0
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142 15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94 (383)
Q Consensus 15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (383)
....++.+..+|+++++.+|..|+++|+.+... .++.|+..| +++++.++..++++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence 456788999999999999999999999876431 268899999 68899999999999999863
Q ss_pred ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171 (383)
Q Consensus 95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l 171 (383)
...++.|..+++++++.++..++++|..+... ..++.|...++++++.++..+..+|+.+
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~------------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE------------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH------------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 34789999999999999999999999998732 2578899999999999999999988753
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.79 E-value=8.6e-09 Score=86.07 Aligned_cols=193 Identities=9% Similarity=0.119 Sum_probs=142.1
Q ss_pred HHHHhhCCCChHHHHHHHHHHHH-HhcCChHHHHHHHh-cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CCCh-
Q 037142 21 IFVKLLASPSDDIRMQSVWALGN-IAAESPRFRDLVLG-EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RPIF- 96 (383)
Q Consensus 21 ~L~~lL~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 96 (383)
-|.+.+.+.++.-|..|+..|.. ++.+.++......+ ..++..|.+.+.++.+..++..|+.+++.++.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 46677889999999999999999 87443221100000 12356677777557789999999999999996543 2333
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH-HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV-IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
.....++|.++..+.+....++..+..++..++.. .++....- .+ .+++.++..|++.++.++..++.+|..++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 45577999999999999999999999999988875 22211110 11 26788999999999999999999999998665
Q ss_pred Ccc---ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 176 YSQ---TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 176 ~~~---~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
+.. ....+...+++.+..++.++ ++.+|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 431 11122247899999999988 99999999999998863
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=7.3e-07 Score=86.26 Aligned_cols=204 Identities=16% Similarity=0.210 Sum_probs=143.3
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 98 (383)
++.|.+.+.+.+..++..|+.+|+.+-.++.. ..++..|++.+.++.+..+++.++..|+.+....+
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------ 540 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------ 540 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh------
Confidence 66777778776667777888888877432211 12345666665456678899999999988875532
Q ss_pred hhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCC
Q 037142 99 VRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 99 ~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
..++.+++.+. +.++.+|..++.++.--+.+ ..+.. .++.|++.+ .+.++.++..|..+|+.+..+++
T Consensus 541 --e~~~~li~~L~~~~dp~vRygaa~alglAyaG--TGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 541 --ELADDLITKMLASDESLLRYGGAFTIALAYAG--TGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp --GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--SCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC--CCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 35666766665 56788888888877655544 11111 245444444 45678899999999999876654
Q ss_pred ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
..++.++..+.+..++.+|..+..+++.++.+++. ..+++.|..++++++..||..|+.+|+.+
T Consensus 611 ---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 611 ---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp ---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 23566666665444999999999999999987643 22456778888899999999999999999
Q ss_pred cCCCC
Q 037142 257 TFGGT 261 (383)
Q Consensus 257 ~~~~~ 261 (383)
....+
T Consensus 675 g~gtn 679 (963)
T 4ady_A 675 LIQQT 679 (963)
T ss_dssp STTCC
T ss_pred hcCCc
Confidence 87643
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.60 E-value=5.1e-09 Score=78.33 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=91.8
Q ss_pred hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179 (383)
Q Consensus 100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~ 179 (383)
...++.+..+++++++.++..++++|..+... .++.|+..|+++++.++..++++|+.+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 45678888999999999999999888766532 25888999999999999999999998752
Q ss_pred cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256 (383)
Q Consensus 180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 256 (383)
...++.|...+.++ ++.+|..++++|+++.. ...++.|..++.++++.+|..|+++|..+
T Consensus 72 -----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 13588899999888 99999999999999852 23467888889888999999999988653
No 82
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.43 E-value=3.1e-06 Score=71.62 Aligned_cols=189 Identities=12% Similarity=0.103 Sum_probs=143.3
Q ss_pred HHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 037142 147 PRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI 226 (383)
Q Consensus 147 ~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~ 226 (383)
..+++.|.+++.+.+..++..|..+...+......+++.+++..|+.+.... +.+++..++.+++++.... ....-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v-~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFV-DGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSH-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcc-ccccchh
Confidence 4556666677888899999999986556777888899999999999999998 9999999999999998754 4454555
Q ss_pred -hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH----------cCChHHHHhhcC---CCCHHHHHHH
Q 037142 227 -DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER----------EGCIKPLCDLLL---CPDPQIVTVC 292 (383)
Q Consensus 227 -~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~----------~~~i~~L~~ll~---~~~~~v~~~a 292 (383)
...++..+..++.+....|.+.|...|..++... +.....+.+ ...++.|+.+|+ ..|.+++.++
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s-e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS-ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC-cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 5668888999988888999999999999998763 222222211 124788999997 6789999999
Q ss_pred HHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC--CHHHHH
Q 037142 293 LKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD--NYEIHE 345 (383)
Q Consensus 293 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~v~~ 345 (383)
+..|..++...+.... ...+...+++.|.-..+.+.+... +.++.+
T Consensus 278 mtLIN~lL~~apd~d~-------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 278 VTLINKTLAALPDQDS-------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHCSSHHH-------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHhcCCChhH-------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 9998888877553211 235777788888877888876665 545443
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.25 E-value=1.3e-05 Score=67.85 Aligned_cols=187 Identities=12% Similarity=0.077 Sum_probs=134.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccce
Q 037142 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYI 182 (383)
Q Consensus 103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 182 (383)
...++.-+.+.+...++.++.-|..+... +.+....++..+++..|+....+.+.+.+..+++++.++..+.+.....+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~-D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQE-DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHT-CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhc-chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 34455666677788889999999985544 57899999999999999999999999999999999999987644222212
Q ss_pred ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh----------cCChHHHHHHhh---cCchhHHHHH
Q 037142 183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID----------AGLIGPLVNLLQ---NAVFYIKKEA 249 (383)
Q Consensus 183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~----------~~~l~~L~~ll~---~~~~~v~~~a 249 (383)
-...++..+..++.+. +..+.+.|+..|-.++..++.....+.+ ...++.++.+++ ..+.+++..|
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 2456889999999976 8999999999999998766433332221 124889999997 6788999998
Q ss_pred HHHHHHhcCCCC-HHHHH----HHHHcCChHHHHhhcCCC--CHHHHHH
Q 037142 250 AWAISNATFGGT-HEQIK----YLEREGCIKPLCDLLLCP--DPQIVTV 291 (383)
Q Consensus 250 ~~~l~~l~~~~~-~~~~~----~l~~~~~i~~L~~ll~~~--~~~v~~~ 291 (383)
...|-.+....+ .+... .+-+.|+-..+...++.. +++++.+
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 877766655533 33222 333345555666666654 5565543
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.18 E-value=8.8e-06 Score=72.43 Aligned_cols=209 Identities=16% Similarity=0.169 Sum_probs=139.8
Q ss_pred ChHHHHHHHhCC--ChHHHHHhhC---------------C--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh--HHH
Q 037142 6 TLEDKKAVVDHG--AVPIFVKLLA---------------S--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL--IPL 64 (383)
Q Consensus 6 ~~~~~~~~~~~g--~i~~L~~lL~---------------~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~L 64 (383)
.+++|..+.+.+ .++.+++.+. + ...+++.+++.++.-++... +..+.+...++. +.|
T Consensus 198 ~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L 276 (480)
T 1ho8_A 198 IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDL 276 (480)
T ss_dssp SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHH
T ss_pred chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHH
Confidence 567788888754 3566654332 1 13678999999999999764 566666666643 567
Q ss_pred HHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh------hhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCC--Cc
Q 037142 65 LTQLNNHENLSMKRIATWTLSNLCGGKPRPIF------DQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGG--KN 134 (383)
Q Consensus 65 ~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~--~~ 134 (383)
+..++.+..+.+.+.++.+|.|+....+.... ....++++.+..+-. -.|+++....-.....|-... -.
T Consensus 277 ~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lt 356 (480)
T 1ho8_A 277 LKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELT 356 (480)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcc
Confidence 77787778899999999999999987532211 111344443333333 345666555433322221110 00
Q ss_pred --hHHHHHHHh---------------------------CcHHHHHHhcCC----------CChhhHHHHHHHHhhhhcCC
Q 037142 135 --DEIQAVIEA---------------------------GVCPRLVKLLGH----------PSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 135 --~~~~~~~~~---------------------------~~i~~l~~~L~~----------~~~~v~~~a~~~L~~l~~~~ 175 (383)
+.+..-+.+ .++..|+++|.+ .|+.+..-||.=++.++.+.
T Consensus 357 sfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~ 436 (480)
T 1ho8_A 357 SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL 436 (480)
T ss_dssp HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC
Confidence 111111111 256788888873 37888999999999999999
Q ss_pred CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
|.....+-+.|+=..++.++.++ +++|+.+|+.++..+..
T Consensus 437 P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 437 PESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 98888777778888999999999 99999999999988764
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.13 E-value=0.0003 Score=69.09 Aligned_cols=265 Identities=15% Similarity=0.155 Sum_probs=182.6
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCC---hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAES---PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR 93 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (383)
+++..+.+.+.+..+. +.|+.++..++... +..-..++ +.++.++..+ .+....++..|-.++..+...-+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~- 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN- 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC-
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC-
Confidence 3566666666653223 88999999998432 12222333 5788888888 57778888888777777765432
Q ss_pred CChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 94 PIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
......++|.|...+.+. .+..+..++.++..++.. .++....... .++|.+...+-+..++|...+..++..+|
T Consensus 128 --~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~-~~~~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 128 --PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA-AKDQVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp --GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-SHHHHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred --HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hHHHHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 122377899999988755 699999999999999976 4443333333 48999999999999999999999998888
Q ss_pred cCCCc-cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC--HHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142 173 RGDYS-QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN--REQIQAVIDAGLIGPLVNLLQNAVFYIKKEA 249 (383)
Q Consensus 173 ~~~~~-~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 249 (383)
..-++ .+ ...+|.|++.+.++ +. ..+++..|+..+.-. ..-.-.+ +.|.|..-|......+++.+
T Consensus 204 ~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~ 271 (986)
T 2iw3_A 204 ETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKS 271 (986)
T ss_dssp GGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHH
T ss_pred hcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheee
Confidence 53221 11 15688999998876 33 455566665543211 1111111 35566666666788899999
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhch
Q 037142 250 AWAISNATFGG-THEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 250 ~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~ 304 (383)
+.++.|+|.-- ++.....++. .++|.+-...+ -.+|++|..+..++..+...+.
T Consensus 272 ~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 272 AVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 99999998754 5666666544 47777777666 4699999999888888876644
No 86
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=98.07 E-value=0.0005 Score=58.17 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=163.2
Q ss_pred HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh---h---hchhHHHHHhhccCCHHHHHHHHHH
Q 037142 51 FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ---V---RPCLPTLAQLVHSNDEHVMSNACWG 124 (383)
Q Consensus 51 ~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~---~~~i~~l~~ll~~~~~~~~~~~~~~ 124 (383)
....+...+.+..|+..| ..-+-+.+..+..++.++.+......... . ..++..|+...+ ++++...+-..
T Consensus 70 L~~ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~m 146 (341)
T 1upk_A 70 LAQELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIM 146 (341)
T ss_dssp HHHHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHH
Confidence 334566778888899988 66788999999999999998763322111 1 344555555544 34555566666
Q ss_pred HHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC---CChHHHHHhhccccch
Q 037142 125 LSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC---GALPYLLGLLIDNHKT 201 (383)
Q Consensus 125 l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~~~ 201 (383)
|...+++ ....+.+...+.+..+++++..++-++...|..++..+..........++.. .++.....++.++ +.
T Consensus 147 LRecir~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NY 223 (341)
T 1upk_A 147 LRECIRH--EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NY 223 (341)
T ss_dssp HHHHHTS--HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SH
T ss_pred HHHHHHh--HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cc
Confidence 7777766 5666667777788899999999999999999999998876554444444443 3566777888888 99
Q ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHH--cCCh
Q 037142 202 SIKNYACWIISNITAG--NREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG--THEQIKYLER--EGCI 274 (383)
Q Consensus 202 ~~~~~a~~~l~nl~~~--~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~--~~~i 274 (383)
-+++.++..|+.+... +.......+ +..-+..++.+|.+.+..++.+|..++--++.+. +++....+.. ..++
T Consensus 224 VTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl 303 (341)
T 1upk_A 224 VTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLI 303 (341)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHH
Confidence 9999999999998754 334444444 5667899999999999999999999988887765 3444444443 2456
Q ss_pred HHHHhhcCCC
Q 037142 275 KPLCDLLLCP 284 (383)
Q Consensus 275 ~~L~~ll~~~ 284 (383)
..|-++..+.
T Consensus 304 ~fl~~f~~d~ 313 (341)
T 1upk_A 304 EFLSKFQNDR 313 (341)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHhCCCCC
Confidence 6666665544
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.07 E-value=0.00014 Score=71.45 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=155.9
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142 17 GAVPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
+.++.++..+.+....++..|-.+...+.. -+++... .++|.|+..|........+..|+.++..++...+..-
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 578888888888888999998888777664 3343333 3378999999655678999999999999998654333
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
......++|.+...+.+..+++...+..++..+|.-..+..+. .++|.|+..+.+++. ...+...|+..+.-.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCS
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhhcCeeEe
Confidence 3445789999999999999999999999999888642333333 368999999988753 444455554433211
Q ss_pred CccccceecCCC----hHHHHHhhccccchhHHHHHHHHHHHHhc--CCHHHHHHHHhcCChHHHHHHhhc-CchhHHHH
Q 037142 176 YSQTLYIINCGA----LPYLLGLLIDNHKTSIKNYACWIISNITA--GNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKE 248 (383)
Q Consensus 176 ~~~~~~l~~~~~----i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~ 248 (383)
+ ++... +|.|..-|... ...+++.++.++.|++. .++.....++ ..++|-+...... .+|++|.-
T Consensus 243 ~------v~~~~l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~ 314 (986)
T 2iw3_A 243 E------VTPATLSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREV 314 (986)
T ss_dssp C------CCHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHH
T ss_pred e------ecchhHHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHH
Confidence 1 22223 34444555555 77888999999999997 4555554443 4567777776654 58999988
Q ss_pred HHHHHHHh
Q 037142 249 AAWAISNA 256 (383)
Q Consensus 249 a~~~l~~l 256 (383)
|..++..+
T Consensus 315 ~~~a~~~l 322 (986)
T 2iw3_A 315 TLRALKTL 322 (986)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777776
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.07 E-value=7.5e-05 Score=75.01 Aligned_cols=223 Identities=9% Similarity=0.084 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHHHHHHhcCChHHHHHHHhc-----CChH----HHHHHhcCCC---ChhHHHHHHHHHHhhcCCCCCCC
Q 037142 28 SPSDDIRMQSVWALGNIAAESPRFRDLVLGE-----AALI----PLLTQLNNHE---NLSMKRIATWTLSNLCGGKPRPI 95 (383)
Q Consensus 28 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~----~L~~~L~~~~---~~~~~~~a~~~L~~l~~~~~~~~ 95 (383)
++++..++.|+.+++.++........ .... .+.+ .++..| .++ ++.+|..++|+++.++..- .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---C
Confidence 56788999999999999853110000 0000 1112 233344 334 7899999999999999763 2
Q ss_pred hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC----------chHHHHHHHhCcHHHHHHhcCCCC-----hhh
Q 037142 96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK----------NDEIQAVIEAGVCPRLVKLLGHPS-----QSV 160 (383)
Q Consensus 96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~----------~~~~~~~~~~~~i~~l~~~L~~~~-----~~v 160 (383)
......+++.+++.+.++++.++..|++++.+++.... .+....... .+++.++.++.... ...
T Consensus 491 ~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 491 KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccc
Confidence 34567889999999998889999999999999987411 111222222 25667777776641 112
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHHHhh----ccccchhHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHH
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL----IDNHKTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLV 235 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll----~~~~~~~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~ 235 (383)
...++.++..++....+....... .+++.+...+ +++.++.++..++.+++.++.. .++.... +...++|.+.
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~ 647 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFL 647 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHH
Confidence 345566666655332222221111 2334444443 2333566777788888888765 3232222 3445678888
Q ss_pred HHhhcCchhHHHHHHHHHHHhcC
Q 037142 236 NLLQNAVFYIKKEAAWAISNATF 258 (383)
Q Consensus 236 ~ll~~~~~~v~~~a~~~l~~l~~ 258 (383)
.++.....+....+...+..+..
T Consensus 648 ~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 648 TVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHhhhHhhHHHHHHHHHHHHH
Confidence 88876666677777777766653
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.93 E-value=0.00076 Score=67.73 Aligned_cols=261 Identities=13% Similarity=0.098 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-----CCChhHHHHHHHHHHhhcCCCCCCC--hh---hhhc
Q 037142 32 DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-----HENLSMKRIATWTLSNLCGGKPRPI--FD---QVRP 101 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----~~~~~~~~~a~~~L~~l~~~~~~~~--~~---~~~~ 101 (383)
..|..|..+|..++...+ +.+. .-+++.+.+.+.+ +++...++.|+.+++.++....... .. ....
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 467777788888775432 2221 1123333344421 4567889999999999975421111 00 0012
Q ss_pred hhH----HHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 102 CLP----TLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 102 ~i~----~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
+.+ .+...+.++ ++-+|..++|+++.++.. -++ .... .+++.++..|.+++..|+..|+.+|.+++..
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-~~~---~~l~-~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTK---AQLI-ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCH---HHHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-CCH---HHHH-HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 323 344445655 789999999999999976 221 2222 3688899999988899999999999999864
Q ss_pred CC-------cc-ccceec--CCChHHHHHhhccc----cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-
Q 037142 175 DY-------SQ-TLYIIN--CGALPYLLGLLIDN----HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ- 239 (383)
Q Consensus 175 ~~-------~~-~~~l~~--~~~i~~l~~ll~~~----~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~- 239 (383)
.+ .. ...+.. ..+++.|..++... .+......++.+++.++...++...... ..+++.+...+.
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~ 605 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTI 605 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHH
Confidence 22 11 111111 12344455555542 0111334566666655431111111111 113344444443
Q ss_pred ---c-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 240 ---N-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 240 ---~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
+ .+...+..++.+|+.++...+++....+ ...+++.+...+.....+....+...+..++...
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 2 3556777778888888765433333332 3346788888887665567777777777777654
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.91 E-value=3.6e-05 Score=77.46 Aligned_cols=259 Identities=10% Similarity=0.047 Sum_probs=144.0
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHH---hcC-CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ---LNN-HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP 104 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~---L~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 104 (383)
.++..++.|+.+++.++........ ..++.++.+ +.. ++++.++..++|+++.++..-.. .......+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 5778999999999999865433221 223333333 221 34788999999999999864321 1245577888
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHhhhhcCCC-ccccc
Q 037142 105 TLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALHTVGNIARGDY-SQTLY 181 (383)
Q Consensus 105 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~~L~~l~~~~~-~~~~~ 181 (383)
.++..+ + +.++..|++++.++++. .........+ .++..+..++.. -+...+..++.+++.++...+ +....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~-~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRD-CQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHH-CHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHH-HHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 888888 3 78999999999999976 4444444444 367777777776 356788889999998875432 11111
Q ss_pred eecCCChHHHHHhh----cccc-chhHHHHHHHHHHHHh---c--CCH--HH------HH--HHHhcCChHHHHHHhhc-
Q 037142 182 IINCGALPYLLGLL----IDNH-KTSIKNYACWIISNIT---A--GNR--EQ------IQ--AVIDAGLIGPLVNLLQN- 240 (383)
Q Consensus 182 l~~~~~i~~l~~ll----~~~~-~~~~~~~a~~~l~nl~---~--~~~--~~------~~--~~~~~~~l~~L~~ll~~- 240 (383)
.++ .+++.++..+ .... ++..+......+..++ . ... .. .+ .-+-..+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence 111 2233333322 2221 1222333333333332 2 110 00 00 11124577777777754
Q ss_pred -CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 241 -AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 241 -~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
.+..+.+.++++++.++..-..+...++- .+++.++..+..... ..+++.+..++....
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~ 763 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCLFIVASFQTRCC---APTLEISKTAIVMFF 763 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHHHHHHHCC--CC---HHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhC
Confidence 36789999999999976431111111111 134455555544321 236777777776443
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.90 E-value=0.0014 Score=65.78 Aligned_cols=279 Identities=10% Similarity=0.076 Sum_probs=156.1
Q ss_pred HHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcCC---h--HHHHHHHhc--CChHHH-----------HHHhc--
Q 037142 11 KAVVDHGAVPIFV-KLLASPSDDIRMQSVWALGNIAAES---P--RFRDLVLGE--AALIPL-----------LTQLN-- 69 (383)
Q Consensus 11 ~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~~--g~i~~L-----------~~~L~-- 69 (383)
..+++.++++.+. ++|. +++++..|+.+|..+.... + .+.+.+... +.+..+ -..+.
T Consensus 229 ~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~ 306 (1023)
T 4hat_C 229 RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA 306 (1023)
T ss_dssp HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHT
T ss_pred HHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcc
Confidence 4566778888888 8874 6789999999999998621 2 222211100 111111 11111
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCC-----C-hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-----CchHHH
Q 037142 70 NHENLSMKRIATWTLSNLCGGKPRP-----I-FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-----KNDEIQ 138 (383)
Q Consensus 70 ~~~~~~~~~~a~~~L~~l~~~~~~~-----~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~ 138 (383)
+..|.+.....+.++..+....... . ......++..++.+-..++.++...++..=+.++... ......
T Consensus 307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~ 386 (1023)
T 4hat_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE 386 (1023)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 2335666666666665554432110 0 1111233445666656677787776665544444210 011223
Q ss_pred HHHHhCcHHHHHHhcCCCC---------hh------------hHHHHH-HHHhhhhcCCCccccceecCCChHHHHHhh-
Q 037142 139 AVIEAGVCPRLVKLLGHPS---------QS------------VLTQAL-HTVGNIARGDYSQTLYIINCGALPYLLGLL- 195 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~~~~---------~~------------v~~~a~-~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll- 195 (383)
.++.. +++.++..+..++ .+ ...... .+|..++.-. ....++.+.+.+
T Consensus 387 ~~~~~-L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~--------~~~~~~~~~~~l~ 457 (1023)
T 4hat_C 387 EICSQ-LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN--------VIDTEEIMISKLA 457 (1023)
T ss_dssp HHHHH-HHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccC--------HHHHHHHHHHHHH
Confidence 33332 5666666665432 00 111111 2222222111 112333344433
Q ss_pred ---cc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCC--CHHH
Q 037142 196 ---ID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGG--THEQ 264 (383)
Q Consensus 196 ---~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~--~~~~ 264 (383)
.. ..+...++.++++++.++.+..+....-.-..+++.|+.++.+ +...++..++|+++..+..- .++.
T Consensus 458 ~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~ 537 (1023)
T 4hat_C 458 RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF 537 (1023)
T ss_dssp HHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 33 1278889999999999987654432322234467788888764 44567778899999876542 2233
Q ss_pred HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 265 IKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 265 ~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
... ++..|++.+..+++.++..|++++.++++.+..
T Consensus 538 L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 538 LRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 677788888888899999999999999997664
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.84 E-value=0.0011 Score=66.61 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHhcCChHH-H-----------HHHHhcCChHHHHHHhcC----CCChhHHHHHHHHHHhhcCCC----
Q 037142 32 DIRMQSVWALGNIAAESPRF-R-----------DLVLGEAALIPLLTQLNN----HENLSMKRIATWTLSNLCGGK---- 91 (383)
Q Consensus 32 ~i~~~a~~~L~~l~~~~~~~-~-----------~~~~~~g~i~~L~~~L~~----~~~~~~~~~a~~~L~~l~~~~---- 91 (383)
+.....+..+..++...... . ..+ ...++.++.+... ..+..+...++++...++...
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~ 388 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS 388 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 66666777777666432221 1 111 1334445554422 236788889998888876411
Q ss_pred ----CCCC----hhhhhchhHHHHHhhccC-C--------------HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142 92 ----PRPI----FDQVRPCLPTLAQLVHSN-D--------------EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR 148 (383)
Q Consensus 92 ----~~~~----~~~~~~~i~~l~~ll~~~-~--------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~ 148 (383)
.... ......+++.++..+.-+ + .+.|..+..++..++.......... +++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~ 463 (971)
T 2x1g_F 389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEI-----LAAM 463 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHH
Confidence 0111 112244555555555311 1 1456667777777776512122222 2333
Q ss_pred HHHhcCC-----CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh---c--cccchhHHHHHHHHHHHHhcCC
Q 037142 149 LVKLLGH-----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL---I--DNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 149 l~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll---~--~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
+-..+.+ .++..+..++.+++.++.+...... ..++.++.++ . +. ++.++..++++++.++..-
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l 537 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWL 537 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHH
Confidence 3333332 6788999999999999876553221 3344444433 2 23 7899999999999887421
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHH
Q 037142 219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKAL 296 (383)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l 296 (383)
....+.+ ..+++.++..+ + +.++..|++++.+++..+......++ ..++..+..++..+ +.+.+..+..++
T Consensus 538 ~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai 610 (971)
T 2x1g_F 538 MENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSI 610 (971)
T ss_dssp C----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred hcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 1111111 22455666666 2 78999999999999976433323332 24677777777763 568888899999
Q ss_pred HHHHHhc
Q 037142 297 ENILKVG 303 (383)
Q Consensus 297 ~~l~~~~ 303 (383)
..++...
T Consensus 611 ~~i~~~~ 617 (971)
T 2x1g_F 611 GKLMSLL 617 (971)
T ss_dssp HHHHHTS
T ss_pred HHHHHhC
Confidence 9998753
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00083 Score=56.87 Aligned_cols=187 Identities=14% Similarity=0.073 Sum_probs=128.3
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-----ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc----
Q 037142 64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRP-----IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN---- 134 (383)
Q Consensus 64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~---- 134 (383)
+-+-| .+.+...|..++..+..+....+.. .........+.+.+.+.+.+..++..++.++..++.....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55677 6889999999999988877654221 1112355677788889999999999999999988764111
Q ss_pred -hHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142 135 -DEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 135 -~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
........ .+++.++.- +.+....++..+..++..++....... .+++.+...+.+. ++.++..++..|.
T Consensus 93 ~~~~~~~~~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLIS-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHH-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred cchhHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 11122222 367878764 788889999999998888774432111 2356677788888 9999999999998
Q ss_pred HHhcC--CHH-HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142 213 NITAG--NRE-QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 213 nl~~~--~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
.+... ... .....+ ..+++.+..++.+.++.||..|..++..+....
T Consensus 165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 87642 100 001111 124556788889999999999999998887653
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.74 E-value=0.0043 Score=62.95 Aligned_cols=101 Identities=11% Similarity=0.118 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-----cCchhHHHHHHHHHHHhcCCC--CHHHHHHHHHcC
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-----NAVFYIKKEAAWAISNATFGG--THEQIKYLEREG 272 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~ 272 (383)
+...++.++++++.++.........-+-..+++.+..+.. .+.+.++..++|+++..+..- .++... .
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~ 540 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----T 540 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----H
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----H
Confidence 6678999999999987643222111111223444444332 134556667999999876431 122222 2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
+++.+++.+.++++.++..|++++.++++.+..
T Consensus 541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888999999999999999987653
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.74 E-value=0.00012 Score=65.98 Aligned_cols=244 Identities=15% Similarity=0.094 Sum_probs=156.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHh---c--------CC-CChhHHHHHHHHHH
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL---N--------NH-ENLSMKRIATWTLS 85 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L---~--------~~-~~~~~~~~a~~~L~ 85 (383)
..+.|+.-|-++.+++|.-|+-+|..+........-.....+. ...++++ . ++ .-..+|+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4667777788899999999999999887422110000000111 2222222 1 11 23579999999999
Q ss_pred hhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 037142 86 NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL 165 (383)
Q Consensus 86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~ 165 (383)
.+ .+-+.. ..++..++..+..+.++++.-++..|..+..- -.. . .++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DL-L~~-----L-d~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEF-VED-----K-DGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGG-CCC-----H-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHH-HHH-----H-HHHHHHHHhhcCCcccHHHHHHH
Confidence 99 554433 33444444555778899999999999999332 111 2 24788999999999999999999
Q ss_pred HHHhhhhcCCCccccceecCCChHHHHHhhccccc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY 244 (383)
Q Consensus 166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 244 (383)
.+|.-++ .+.... .++..+...|.+.++ ..-....+..|+.++..+.. .-.+...+|.|...+.|.-..
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHH
Confidence 9999888 222221 456667777765322 22344556677777654421 111347899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142 245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296 (383)
Q Consensus 245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l 296 (383)
||..+..++..+. .....+.+ .-.++-.++++++..+..+-
T Consensus 391 VR~AVL~TL~tfL---~~~~LRLI--------FQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 391 VRTSILNMVKNLS---EESIDFLV--------AEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHTTTCC---CHHHHHHH--------HHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hhhHHHHH--------HHHHHhCCcHHHHHHHHHHH
Confidence 9999999998887 22322222 12244567778877666544
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.72 E-value=0.00027 Score=58.54 Aligned_cols=184 Identities=13% Similarity=0.045 Sum_probs=123.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccccee
Q 037142 104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYII 183 (383)
Q Consensus 104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 183 (383)
+.+...+.+.|..-+..++..|...... ..+......+. +++.+.-.+.+++..+...++.+|..+...-...--.+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~-~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH-CHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhh-ChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3456666677877777777777776654 23222222221 344444445578999999999888887521110000121
Q ss_pred c---CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142 184 N---CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 184 ~---~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
+ .-++|.|+.-+.+. .+.+|..+-.++..+..-.+ -..+++.+.+-+.+.+...|.+++..+..+....
T Consensus 127 ~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1 24678899988888 88899888777766643111 1235667788888899999999999999886432
Q ss_pred CHHHHHHHHHcCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142 261 THEQIKYLEREGCI---KPLCDLLLCPDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 261 ~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~al~~l~~l~~~~ 303 (383)
+.. ....+ +.+..++.+.|..|+..|+.++..+....
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 211 23468 99999999999999999999998887654
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.69 E-value=0.0029 Score=63.53 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=95.6
Q ss_pred HHHHHHhc----CCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh---ccccchhHHHHHHHHHHHHhcCC
Q 037142 146 CPRLVKLL----GHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL---IDNHKTSIKNYACWIISNITAGN 218 (383)
Q Consensus 146 i~~l~~~L----~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll---~~~~~~~~~~~a~~~l~nl~~~~ 218 (383)
.+.+...+ .+.++..+..++.+++.++.+..... ...++.++..+ ..+ ++.++..++++++.++..-
T Consensus 447 ~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l 520 (963)
T 2x19_B 447 YDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWL 520 (963)
T ss_dssp HHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHH
Confidence 34444445 55788899999999999997654322 23455555544 334 7789999999999987421
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHH
Q 037142 219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKAL 296 (383)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l 296 (383)
....+. -..+++.++..+.+ +.++..|++++.+++..+......++ ..++..|..++.. -+.+.+..+..++
T Consensus 521 ~~~~~~--l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai 594 (963)
T 2x19_B 521 ADHPVM--INSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQAL 594 (963)
T ss_dssp HHCHHH--HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HhCHHH--HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 111111 24678888888854 78999999999999864321111111 1244555555554 2567888899999
Q ss_pred HHHHHhc
Q 037142 297 ENILKVG 303 (383)
Q Consensus 297 ~~l~~~~ 303 (383)
..++...
T Consensus 595 ~~i~~~~ 601 (963)
T 2x19_B 595 GFLLSAL 601 (963)
T ss_dssp HHHHTTS
T ss_pred HHHHhcC
Confidence 9998654
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.63 E-value=0.0048 Score=51.07 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=128.0
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CCCChhHHHHHHHHHHhhc----
Q 037142 16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NHENLSMKRIATWTLSNLC---- 88 (383)
Q Consensus 16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~~~~~~~~~a~~~L~~l~---- 88 (383)
.-+=+.+...|-+.|..-+..++..|.......++ .+. ..+..+++++. .+.+..+...++.+|..+.
T Consensus 45 ~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~ 119 (266)
T 2of3_A 45 NQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR 119 (266)
T ss_dssp TTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 33666777777788888899898888876644332 222 22344444432 3568888888887777663
Q ss_pred CCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 89 GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 89 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
...+.........++|.|+.-+-+....+|..+-.++..++.- .++ ..+++.++..+++.+...+..++..+
T Consensus 120 ~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l 191 (266)
T 2of3_A 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VGP-------LKMTPMLLDALKSKNARQRSECLLVI 191 (266)
T ss_dssp HTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HCH-------HHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CCH-------HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3222223333467899999999999889998888887776643 111 12567888899999999999999999
Q ss_pred hhhhcCCCccccceecCCCh---HHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142 169 GNIARGDYSQTLYIINCGAL---PYLLGLLIDNHKTSIKNYACWIISNITA 216 (383)
Q Consensus 169 ~~l~~~~~~~~~~l~~~~~i---~~l~~ll~~~~~~~~~~~a~~~l~nl~~ 216 (383)
..+.....-. ....+ +.+..++.+. +..+|..|+.++..+-.
T Consensus 192 ~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 192 EYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 9998543322 23467 9999999998 99999999999886543
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.54 E-value=0.018 Score=57.78 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV 150 (383)
Q Consensus 71 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~ 150 (383)
+.+...++.++++++.++.............+++.+..+ .++++.++..++|+++.++.. -... ..... .+++.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~-l~~~-~~~l~-~vl~~l~ 535 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEW-LADH-PVMIN-SVLPLVL 535 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHH-HHHC-HHHHT-TTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHH-HHhC-HHHHH-HHHHHHH
Confidence 457788999999999999875332212223344433222 235788999999999998864 1111 22333 5889999
Q ss_pred HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhcCCH-HHHHHHHhc
Q 037142 151 KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITAGNR-EQIQAVIDA 228 (383)
Q Consensus 151 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~ 228 (383)
..|.+ +.++..|+.++..++..........+ ..++..+..++... .+...+..++.+++.++...+ +.....++
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~- 611 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH- 611 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-
Confidence 99865 78999999999999965432211111 13344445555542 146788888899998875432 33333332
Q ss_pred CChHHHHHHhh----cC-chhHHHH---HHHHHHHhcCCC----C-----------------HHHHHHHHHcCChHHHHh
Q 037142 229 GLIGPLVNLLQ----NA-VFYIKKE---AAWAISNATFGG----T-----------------HEQIKYLEREGCIKPLCD 279 (383)
Q Consensus 229 ~~l~~L~~ll~----~~-~~~v~~~---a~~~l~~l~~~~----~-----------------~~~~~~l~~~~~i~~L~~ 279 (383)
.+++.+...+. .+ +++.+.. ...+|+.+...- + +.-...+ ...+++.+..
T Consensus 612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 690 (963)
T 2x19_B 612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQVFQLIQK 690 (963)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHHHHHHHHH
Confidence 24444444443 22 4444443 233333322110 0 0001111 1235565555
Q ss_pred hcC--CCCHHHHHHHHHHHHHHHHhch
Q 037142 280 LLL--CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 280 ll~--~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++. ..++.+.+.++.++..++...+
T Consensus 691 ~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 691 VLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 554 3467888888888888876433
No 100
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.52 E-value=0.0018 Score=52.35 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 037142 205 NYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCD 279 (383)
Q Consensus 205 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ 279 (383)
.+|+..+..++++ ++.+..+++.++.-.|..+++.. -..+|-.+..+++.+....+++.+.++.+.+++|..++
T Consensus 74 cnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 4566666667664 58888999999988888888753 35789999999999998889999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142 280 LLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV 359 (383)
Q Consensus 280 ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 359 (383)
.++.++.-.+..|...+..++..+....... ...+.+..+..-. -..+..+.+++++.+.+.......++.+...
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC---~t~eRF~av~~vL--~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYIC---QTYERFSHVAMIL--GKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHT---SSHHHHHHHHHHH--HHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHH---ccHHHHHHHHHHH--HHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 9999999889999999999998766543221 1111122211111 1233466778888887777666666655543
Q ss_pred C-----CCCcccccccccc
Q 037142 360 V-----GPQPGLLYAGNEE 373 (383)
Q Consensus 360 ~-----~~~~~~~~~~~~~ 373 (383)
. .-+|..+|+++..
T Consensus 228 ar~aL~~~LP~~Lrd~tf~ 246 (268)
T 2fv2_A 228 AREALRQCLPDQLKDTTFA 246 (268)
T ss_dssp HHHHHHHHSCGGGTSSTTH
T ss_pred HHHHHHHhCcHHhhChHHH
Confidence 2 4456666666543
No 101
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.50 E-value=0.007 Score=60.71 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC----CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN----HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP 104 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 104 (383)
.++..++.++|+++.++....+....-.-..+++.|+.++.. ++...++..++|+++.+++.-. ........++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 679999999999999997543322211113456778887732 1234456678899999876431 12234567777
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH--------HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 105 TLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ--------AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 105 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
.+...+.++++.++..|++++.++|.. ...... ...+ .++..+......-+++-+..+..+++.++...+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~-c~~~l~~~~~~e~~p~~~-~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK-CKYHFVIQQPRESEPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH-HTHHHHSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHhhccCCCCCchhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 777877778899999999999999965 221110 0111 133444444455566777888899998887654
No 102
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.46 E-value=0.028 Score=47.67 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc-
Q 037142 33 IRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH- 111 (383)
Q Consensus 33 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~- 111 (383)
+...+...|+.+. +++...+-+++.+++..+...+ +-++.++.+..+..|...+... ..........+|.++..+.
T Consensus 259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhcc
Confidence 4455555555555 4568888899999999999999 7889999999999999887543 2222334778999998887
Q ss_pred cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-------CChh-------hHHHHHHHHhhhhc----
Q 037142 112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-------PSQS-------VLTQALHTVGNIAR---- 173 (383)
Q Consensus 112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-------~~~~-------v~~~a~~~L~~l~~---- 173 (383)
+++.++.....+.|.|...+ ..+-.+..+..+.++.+...+.. .+.. +...+++++.|+..
T Consensus 336 h~eDdvvYSGTGFLSNVVAH-Kq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIP 414 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAH-KQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIP 414 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTT-CHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred CCCcceEEecchHHHHHHhc-ccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEe
Confidence 67899999999999999988 66666667778888888776643 2222 33444555555531
Q ss_pred -CCCc----------cccceecCCChHHHHHhhcccc-----chhHHHHHHHHHHHHhcCCH---HH----HHHHHhcCC
Q 037142 174 -GDYS----------QTLYIINCGALPYLLGLLIDNH-----KTSIKNYACWIISNITAGNR---EQ----IQAVIDAGL 230 (383)
Q Consensus 174 -~~~~----------~~~~l~~~~~i~~l~~ll~~~~-----~~~~~~~a~~~l~nl~~~~~---~~----~~~~~~~~~ 230 (383)
.+.. ....+++..+++.++.+|+-+. --++|...++.+--+..... +. .+.....+.
T Consensus 415 m~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NL 494 (619)
T 3c2g_A 415 TPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENL 494 (619)
T ss_dssp CTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCH
T ss_pred cCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhh
Confidence 1111 1233556677888888886431 23455566665554443221 10 011111233
Q ss_pred hHHHHHHhh-----cC-------chhHHHHHHHHHHHhcCCC-CHHH-HHHHHHcCChHHHHhhcCCC--CHHHHHHHHH
Q 037142 231 IGPLVNLLQ-----NA-------VFYIKKEAAWAISNATFGG-THEQ-IKYLEREGCIKPLCDLLLCP--DPQIVTVCLK 294 (383)
Q Consensus 231 l~~L~~ll~-----~~-------~~~v~~~a~~~l~~l~~~~-~~~~-~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~ 294 (383)
+..+.-.+. .. ..++-+.+...+..+...+ ...+ .+.+ -.+..=+++++.. .|....+.+.
T Consensus 495 vGHIciA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~ 571 (619)
T 3c2g_A 495 IGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLV 571 (619)
T ss_dssp HHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHH
Confidence 333332221 11 1123334455555554433 1111 1111 1233344555544 4566667777
Q ss_pred HHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142 295 ALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354 (383)
Q Consensus 295 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 354 (383)
....+++.++-... .+. -.-..++.+-+|.++++.+.|..++.+|
T Consensus 572 VcDKILeHcP~~Ad--------------~W~-i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 572 VCDKILEHCPTRAD--------------IWT-IDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp HHHHHHHHCTTHHH--------------HSC-CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCcchhc--------------cce-echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 77777776653221 111 1234567788999999988888888765
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0049 Score=52.04 Aligned_cols=190 Identities=10% Similarity=0.074 Sum_probs=124.2
Q ss_pred HHHhcCCCChhhHHHHHHHHhhhhcCCCccc--c-ceec-CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH----
Q 037142 149 LVKLLGHPSQSVLTQALHTVGNIARGDYSQT--L-YIIN-CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE---- 220 (383)
Q Consensus 149 l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~--~-~l~~-~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~---- 220 (383)
+-+-|.+.++..|..++..+..+....+... . .+.. ....+.+...+.+. +..+...++.++..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 6688999999999999999988775433211 0 0111 13456677788777 999999999999988753211
Q ss_pred -HHHHHHhcCChHHHHHH-hhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 037142 221 -QIQAVIDAGLIGPLVNL-LQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN 298 (383)
Q Consensus 221 -~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~ 298 (383)
......-..+++.|+.- +.+....++..|..++..++..... ... +++.+...+++.+|.++..++..|.+
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11111123356666654 5667888998888888777644211 111 35667778889999999999999999
Q ss_pred HHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142 299 ILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357 (383)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 357 (383)
++...+..... ...... ..++.+..++++.+++|+..|..++-.+|..
T Consensus 166 ~l~~fg~~~~~------~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVN------VQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCC------HHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCC------chhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 98764322110 011111 1235567889999999999999988666654
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.35 E-value=0.0031 Score=57.08 Aligned_cols=188 Identities=14% Similarity=0.052 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhh
Q 037142 31 DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV 110 (383)
Q Consensus 31 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll 110 (383)
.-||+.|+.+|+.+ ..-+.- ..++..++..+ ..+..+++.-++-.|..+ .+- .. ...++++.++..+
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DL--L~--~Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEF--VE--DKDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGG--CC--CHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHH--HH--HHHHHHHHHHhhc
Confidence 46899999999988 543322 34455555555 566899999998888888 211 11 1578899999999
Q ss_pred ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC-hhhHHHHHHHHhhhhcCCCccccceecCCCh
Q 037142 111 HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS-QSVLTQALHTVGNIARGDYSQTLYIINCGAL 188 (383)
Q Consensus 111 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 188 (383)
.+.|.+++..|+.+|.-++ . ++....+ +..+...|.+ +| .......+..|+.|+..+.. .-.+...+
T Consensus 309 ~D~DDDVRAVAAetLiPIA-~--p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LV 377 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP-I--TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERL 377 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC-C--SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGG
T ss_pred CCcccHHHHHHHHHhhhhc-c--hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHH
Confidence 9999999999999999999 3 3344443 3444444433 22 23345566777777765542 12334889
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 189 PYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 189 ~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
|.|.+++.++ -..||..++.++..+. .......+++ +++-.++.+++..+..+-
T Consensus 378 PRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIFQ--------NILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 378 KDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVAE--------VVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHHH--------HHHHCSCHHHHHHHHHHH
T ss_pred HHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHHH--------HHHhCCcHHHHHHHHHHH
Confidence 9999999999 9999999999998776 2222222221 234456677776665544
No 105
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.33 E-value=0.0011 Score=66.33 Aligned_cols=278 Identities=10% Similarity=0.013 Sum_probs=149.6
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC--hHHHHHHHhcCChHHHHHHhcC-CCChhHHHHHHHHHHhh
Q 037142 11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAES--PRFRDLVLGEAALIPLLTQLNN-HENLSMKRIATWTLSNL 87 (383)
Q Consensus 11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~~L~~-~~~~~~~~~a~~~L~~l 87 (383)
..+++.+.++.+.++|.+ ++++..|+.+|..+.... ++.+..++..=.+...+..+.. ..|.+..+..+..+..+
T Consensus 227 ~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 227 NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 345556777888888864 899999999999988543 3333333322011122222211 45666655444333222
Q ss_pred c------CCCCC-CC-------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC----C----chHHHHHHHhCc
Q 037142 88 C------GGKPR-PI-------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG----K----NDEIQAVIEAGV 145 (383)
Q Consensus 88 ~------~~~~~-~~-------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~----~----~~~~~~~~~~~~ 145 (383)
+ ...+. .. .....+.++.++.+..+++.++...++.++..+.... . .+....++.. +
T Consensus 305 ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~-L 383 (980)
T 3ibv_A 305 GVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKS-L 383 (980)
T ss_dssp HHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH-H
T ss_pred HHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH-H
Confidence 1 11121 01 1334678999999999888888887777766554210 0 1222233332 5
Q ss_pred HHHHHHhcCCCCh----------------hhHHHHHHHHhhhhcCCCccccceecCCChH----HHHH----hhc---cc
Q 037142 146 CPRLVKLLGHPSQ----------------SVLTQALHTVGNIARGDYSQTLYIINCGALP----YLLG----LLI---DN 198 (383)
Q Consensus 146 i~~l~~~L~~~~~----------------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~----~l~~----ll~---~~ 198 (383)
++.++..++-+++ +.|......+..++.-.++ -+++ .+.. .+. +.
T Consensus 384 l~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~--------~~l~~~~~~i~~~l~~~l~~~~~~ 455 (980)
T 3ibv_A 384 LEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSS--------LFSSYMYSAITSSLSTAATLSPEN 455 (980)
T ss_dssp HHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHHHHHHHHhcccCCC
Confidence 5555555543111 2222222111111111111 1122 2222 231 23
Q ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHH-hcC----ChHHHHHHhh-----cCchhHHHHHHHHHHHhcCCCC--HHHHH
Q 037142 199 HKTSIKNYACWIISNITAGNREQIQAVI-DAG----LIGPLVNLLQ-----NAVFYIKKEAAWAISNATFGGT--HEQIK 266 (383)
Q Consensus 199 ~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~----~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~~--~~~~~ 266 (383)
+...++.++.+++.++.+-........ ... +++.+..++. .+++.++..++++++..+..-. ++...
T Consensus 456 -~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 456 -SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp -HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred -CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 677889999999999875422111100 012 3344555544 5689999999999999876531 11111
Q ss_pred HHHHcCChHHHHh--hcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142 267 YLEREGCIKPLCD--LLLCPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 267 ~l~~~~~i~~L~~--ll~~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
. +++.+++ .+.++++.++..|+.++.++++.+..
T Consensus 535 ~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 535 A-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp H-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred H-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 1 3444555 45566788999999999999998764
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.29 E-value=0.00037 Score=57.26 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=12.8
Q ss_pred HHhhCCCChHHHHHHHHH
Q 037142 23 VKLLASPSDDIRMQSVWA 40 (383)
Q Consensus 23 ~~lL~~~~~~i~~~a~~~ 40 (383)
..++.++++.+|..++..
T Consensus 56 ~~ll~d~~~~VR~~AA~~ 73 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRY 73 (244)
T ss_dssp GGGTTCSSHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHh
Confidence 355677888888887764
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.28 E-value=0.021 Score=48.39 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=150.1
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc----cceec-CCChHHHHHhhccccchhHHHHHHHHHH
Q 037142 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT----LYIIN-CGALPYLLGLLIDNHKTSIKNYACWIIS 212 (383)
Q Consensus 138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~-~~~i~~l~~ll~~~~~~~~~~~a~~~l~ 212 (383)
+.++..+++..++..|..=+-+.+..+..++.++........ +.+.. ..++..|+.. ..++++...+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g---Ye~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG---YESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG---GGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh---hccchhHhHHHHHHH
Confidence 345556788899999988888899999999998886543221 11111 1223333333 224555555555666
Q ss_pred HHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 037142 213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLLLCPDPQIV 289 (383)
Q Consensus 213 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~ 289 (383)
-++. .+.....++..+.+..+.+.++.++.++...|..++-.+.... ......++.. .++...-.++.+++.=++
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 6554 4577777888788889999999999999999999998887653 3333343432 467777889999999999
Q ss_pred HHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142 290 TVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360 (383)
Q Consensus 290 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 360 (383)
.+++..|..++..-.+. ....+++.+..-+..+..++.+++..|+-.|..+..-|....+.
T Consensus 227 RQSlKLLgelLldr~N~----------~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNF----------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHHHHHHSGGGH----------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHhCchHH----------HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 99999999999754432 34667777777788889999999999999999888877766554
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.25 E-value=0.021 Score=50.78 Aligned_cols=248 Identities=13% Similarity=0.052 Sum_probs=152.0
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142 29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ 108 (383)
Q Consensus 29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ 108 (383)
+++..+..|+..+..+...-|+..+.. +..++.+. .+.+..+|.+|+..|-.+|.+ .....+..+|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 678899999999999998888887765 57889999 788999999999999999987 337889999999
Q ss_pred hhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC-ccccceecCCC
Q 037142 109 LVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY-SQTLYIINCGA 187 (383)
Q Consensus 109 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~ 187 (383)
+++.+++.-...+-++|..+... ++. +.+..++..+..+++.++..++..|..=...-+ +....-.+.-+
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~-Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKM-DAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHH-CHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhc-ChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 99999988888888888888865 321 233444444444678899998888865443211 11111122234
Q ss_pred hHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhh------cCchh----HHHHHHHHHHHh
Q 037142 188 LPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQ------NAVFY----IKKEAAWAISNA 256 (383)
Q Consensus 188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~------~~~~~----v~~~a~~~l~~l 256 (383)
+..+.+.|.+- ...--.-.+.+|..+-. ......+.+ ++.+.+... ..+.+ +...+-.++--+
T Consensus 179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 45555666444 33333334444444432 222333332 222222211 01222 222222333333
Q ss_pred cCCC-CHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhch
Q 037142 257 TFGG-THEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 257 ~~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~ 304 (383)
+... +.....++++. ++|.+-.+-... ..+.+...+.++..++.++.
T Consensus 253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 3333 45666676654 777655544432 22467778888888887766
No 109
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.14 E-value=0.015 Score=58.89 Aligned_cols=232 Identities=12% Similarity=0.046 Sum_probs=127.7
Q ss_pred ChHHHHHHhcCCCChhHHHHHHHHHHhhcC----CCCCC--ChhhhhchhHHHHHhhccC-------------------C
Q 037142 60 ALIPLLTQLNNHENLSMKRIATWTLSNLCG----GKPRP--IFDQVRPCLPTLAQLVHSN-------------------D 114 (383)
Q Consensus 60 ~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~i~~l~~ll~~~-------------------~ 114 (383)
+++.++.+. ..++.++...++.....++. ..... .......+++.++..+.-+ +
T Consensus 345 ~l~~ll~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 345 AHQYLIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 355566665 45578888888888877776 32111 1123355566666655311 1
Q ss_pred ---HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142 115 ---EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP 189 (383)
Q Consensus 115 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 189 (383)
.+.+..+..+|..++.. .... +... +.+.+-..+. ..++..+..++.+++.++.........-.-..+++
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~-~~~~---~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHL-NVID---TEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CHHH---HHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcc-CHHH---HHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 02344556666666643 2221 1111 3445555554 36788999999999998754322111000012233
Q ss_pred HHHHhhcc----ccchhHHHHHHHHHHHHhcC---CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCH
Q 037142 190 YLLGLLID----NHKTSIKNYACWIISNITAG---NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTH 262 (383)
Q Consensus 190 ~l~~ll~~----~~~~~~~~~a~~~l~nl~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 262 (383)
.+..+... ..++.++..++++++.++.. +++.. ..+++.++..+.++++.++..|++++.+++..+..
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-----~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 11455555688999877632 22222 23466777778888899999999999999975332
Q ss_pred HHH--------HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 263 EQI--------KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 263 ~~~--------~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
... .++ ..++..+..++..-+.+-......++..++...+
T Consensus 574 ~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 574 HFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 211 111 1234444455555555555667777777776543
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.032 Score=45.18 Aligned_cols=138 Identities=10% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc----chhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHH
Q 037142 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH----KTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVN 236 (383)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~----~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ 236 (383)
-+++..|-.++.+++ ....++++++.-.+.++|.... .+.+|-.++++++.++. .+++....+++.+++|....
T Consensus 74 cnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 445556666666554 6666999998888889887542 36788999999999986 45678888889999999999
Q ss_pred HhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHh
Q 037142 237 LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE--------GCIKPLC-DLLLCPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 237 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~--------~~i~~L~-~ll~~~~~~v~~~al~~l~~l~~~ 302 (383)
.|..++.--|.-|.+.+..+... .....+++.. .++..++ .+.+.+++.+.+.++++-.++...
T Consensus 153 ime~GselSKtvAtfIlqKIL~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHhhccHHHHHHHHHHHHHHhcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999998865 5666665431 1232233 344567778888888877777653
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.84 E-value=0.078 Score=47.26 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=96.3
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH
Q 037142 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK 151 (383)
Q Consensus 72 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~ 151 (383)
.+...++-|+..+.....+-| .....++..++.+.+++|..+|.+|+..|..+|.. +.+.. +...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPR-----VADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhh-----HHHHHHH
Confidence 368889999999999988765 34567899999999999999999999999999975 33333 5678899
Q ss_pred hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142 152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215 (383)
Q Consensus 152 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~ 215 (383)
+|..+++.-...+-.+|..+...++. +.+..+..-+.++ ++.+|+.++..|..-.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHHH
Confidence 99998887777777777777665553 4466666666667 8899999998886543
No 112
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.79 E-value=0.026 Score=46.08 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=104.8
Q ss_pred CCChHHHHHhhccc----------cchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 185 CGALPYLLGLLIDN----------HKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 185 ~~~i~~l~~ll~~~----------~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
.+++..|+.+|... .+......++++|..+... ....+.++ ..+.+..+...+.++++.+|..+...|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35566666555421 1346677889999888644 46666666 466788888888889999999999888
Q ss_pred HHhcCCCC----HHHH-HH------HHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHH
Q 037142 254 SNATFGGT----HEQI-KY------LEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQ 321 (383)
Q Consensus 254 ~~l~~~~~----~~~~-~~------l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (383)
+.+|...+ .+.. .. .-+..-+..+++.++. .+.+.+..++..+..++...+..+ ..-.++.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ 193 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRS 193 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHH
Confidence 88876542 2211 11 1123467778888874 456777777776666666544322 1235667
Q ss_pred HHHHhccHHHHHHHhcCCCHHHHHHHH
Q 037142 322 LVEEAKGLEKIENLQRHDNYEIHEKSA 348 (383)
Q Consensus 322 ~l~~~~~~~~L~~l~~~~~~~v~~~a~ 348 (383)
-|..+|..+.+..+...+++++.....
T Consensus 194 ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 194 ELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 788999999999998888888755544
No 113
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.77 E-value=0.042 Score=55.20 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=69.5
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCC--CHHHHHHHHHcC
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGG--THEQIKYLEREG 272 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~ 272 (383)
+....+.++|+++.++..-.+..+.-+=..+++.|..+..++ ...++...+|+++..+..- .++....
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~----- 566 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT----- 566 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----
Confidence 577889999999999743322222111123566666666544 2345666678888876541 1233333
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 306 (383)
++..|++.+.++++.++..|+.++..++..+...
T Consensus 567 vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 567 VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6888889999999999999999999999988754
No 114
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.71 E-value=0.049 Score=54.71 Aligned_cols=295 Identities=12% Similarity=0.055 Sum_probs=163.3
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChh
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFD 97 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 97 (383)
+..++..+.+++++.|.+|-..|..+-... ++...+..+|..+.++.++..|+.+|.+..... ......
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHP----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCS----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCc----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 444555566667777777777776665432 334445555655668899999999999887753 212222
Q ss_pred hh----hchhHHHHHhhcc-----CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 98 QV----RPCLPTLAQLVHS-----NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 98 ~~----~~~i~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
.. ..++..+.+.... .++.++...+.++..++...-++.. .++++.++..+.. ++......+.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 22 3444545444322 3467778888888888854111111 1355666666643 344556677777
Q ss_pred hhhhcCCCcc-------------ccceecC--CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142 169 GNIARGDYSQ-------------TLYIINC--GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP 233 (383)
Q Consensus 169 ~~l~~~~~~~-------------~~~l~~~--~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~ 233 (383)
..++..-.+. .+.+... .++..+..++....++.+...++.+++.+..--+ ...+++.++++.
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHH
Confidence 7776441110 0011111 1233344445444477888889999998876432 345667777777
Q ss_pred HH-HHhhcCchhHHHHHHHHHHHhcCCCC---HHHHHHHHHcCChHHHHhhc-------------CCCCHHHHHHHHHHH
Q 037142 234 LV-NLLQNAVFYIKKEAAWAISNATFGGT---HEQIKYLEREGCIKPLCDLL-------------LCPDPQIVTVCLKAL 296 (383)
Q Consensus 234 L~-~ll~~~~~~v~~~a~~~l~~l~~~~~---~~~~~~l~~~~~i~~L~~ll-------------~~~~~~v~~~al~~l 296 (383)
+. ..+ ++++.|..|+.+|..+..... .+....+.. +++..+..++ ...|.+.....+..+
T Consensus 252 L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~-~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f 328 (1073)
T 3gjx_A 252 LIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFT-LTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFL 328 (1073)
T ss_dssp HHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHH-HHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred HHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHH
Confidence 73 444 467899999999999876432 222222221 2222222222 222334444444555
Q ss_pred HHHHHhchhcccCcCCCCcccHHHHHHHHh--------ccHHHHHHHhcCCCHHHHHHHHHH
Q 037142 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEA--------KGLEKIENLQRHDNYEIHEKSAKI 350 (383)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~L~~l~~~~~~~v~~~a~~~ 350 (383)
..+.+. +...+... -+++.|..+..+++.++.+.+...
T Consensus 329 ~~~~e~----------------~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~f 374 (1073)
T 3gjx_A 329 CTFLKE----------------HGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEY 374 (1073)
T ss_dssp HHHHHH----------------HHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHH----------------HHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 544432 22223221 134556677788999998888754
No 115
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.64 E-value=0.086 Score=44.76 Aligned_cols=173 Identities=14% Similarity=0.163 Sum_probs=123.4
Q ss_pred HHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHH
Q 037142 126 SLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKN 205 (383)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~ 205 (383)
.++.-+ ++..+.-++...++..+...+.-++.++..+.++.|...+....-... -+ ...+|.++..+.-..+.++..
T Consensus 267 L~LLmH-dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 267 LGLLLH-DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PL-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHCC-SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHhc-ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cc-cccchHHHHHhccCCCcceEE
Confidence 455555 678888999999999999999999999999999999888754331111 11 256788888776444889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-------CchhHHHHHHHHHHHhcC-------------CC-----
Q 037142 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-------AVFYIKKEAAWAISNATF-------------GG----- 260 (383)
Q Consensus 206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~-------------~~----- 260 (383)
...+.++|.+++....++..+..|.++.|...+.. .+..-|+.||..++|... ++
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 99999999999998888888899999999988753 245567778888877641 10
Q ss_pred CH---HHHHHHHHcCChHHHHhhcCCCCH------HHHHHHHHHHHHHHH
Q 037142 261 TH---EQIKYLEREGCIKPLCDLLLCPDP------QIVTVCLKALENILK 301 (383)
Q Consensus 261 ~~---~~~~~l~~~~~i~~L~~ll~~~~~------~v~~~al~~l~~l~~ 301 (383)
++ .+..++++.++++.|+.+++.+.. +++...+..+.-+++
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 12 233344455677888888765421 555556665554444
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.54 E-value=0.0036 Score=51.38 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHH
Q 037142 4 SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWT 83 (383)
Q Consensus 4 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~ 83 (383)
..+++.+......=....|..+++++++.+|..++..|. .+.|..++ ++++..++..++..
T Consensus 61 d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll-~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 61 DPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADR 121 (244)
T ss_dssp CSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHH-cCCCHHHHHHHHHh
Confidence 345666777766544566777888899999999886421 13455556 67777777777663
Q ss_pred HHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHH
Q 037142 84 LSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACW 123 (383)
Q Consensus 84 L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~ 123 (383)
+ . .+.+..+++++++.++..++.
T Consensus 122 l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 122 L---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp S---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred C---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 2 1 012445566777777777665
No 117
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.49 E-value=0.65 Score=46.51 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=135.5
Q ss_pred HHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC---CHHHHHHHHHHHHHhccCCCch----HHH
Q 037142 66 TQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN---DEHVMSNACWGLSLLCDGGKND----EIQ 138 (383)
Q Consensus 66 ~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~----~~~ 138 (383)
..+..+.+++.+.+|-..|.++-..+ ++......++.++ ++.++..++.+|.+.....+.+ ...
T Consensus 14 ~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~ 84 (980)
T 3ibv_A 14 AALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ 84 (980)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 34433447888888888888876542 2556667777643 6889999998888766531334 444
Q ss_pred HHHHhCcHHHHHHhcC-CCChhhHHHHHHHHhhhhcCC-CccccceecCCChHHHHHhhccccch-hHHHHHHHHHHHHh
Q 037142 139 AVIEAGVCPRLVKLLG-HPSQSVLTQALHTVGNIARGD-YSQTLYIINCGALPYLLGLLIDNHKT-SIKNYACWIISNIT 215 (383)
Q Consensus 139 ~~~~~~~i~~l~~~L~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~l~~ll~~~~~~-~~~~~a~~~l~nl~ 215 (383)
.+.+. +++.+...-. .+...++...+.++..+.... +. .-.++++-++.++..+ +. ......++++..+.
T Consensus 85 ~lr~~-ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~ 157 (980)
T 3ibv_A 85 MIRDS-VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAAS-SQSEFSNFYLKVLLSIG 157 (980)
T ss_dssp HHHHH-HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCC-ChhHHHHHHHHHHHHhH
Confidence 44333 5555555211 245678888888888887442 21 1135777788887665 33 33445555655332
Q ss_pred cC--------CHH--H-----HHHHHhc---CChHHHHHHhh----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037142 216 AG--------NRE--Q-----IQAVIDA---GLIGPLVNLLQ----NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGC 273 (383)
Q Consensus 216 ~~--------~~~--~-----~~~~~~~---~~l~~L~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~ 273 (383)
.. ... . ++.+.+. .+.+.+..++. +.++.++..+..++.......+ ...+.+.++
T Consensus 158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~---~~~i~~~~l 234 (980)
T 3ibv_A 158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN---INLIVNEPC 234 (980)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---HHHHHCHHH
T ss_pred HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC---HHhhhcchH
Confidence 10 110 0 1222221 11333444443 3677889999999999998755 344455678
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 274 IKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
++.++.++.. ++++..|+.+|..++....
T Consensus 235 l~~l~~~L~~--~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 235 MNLLYSFLQI--EELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCC--hHHHHHHHHHHHHHHHcCC
Confidence 8899988865 7899999999999998654
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.30 E-value=0.094 Score=42.14 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=102.2
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH-hhccCCHHHHHHHHHHHHHhcc-CCCchHHHHH
Q 037142 63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ-LVHSNDEHVMSNACWGLSLLCD-GGKNDEIQAV 140 (383)
Q Consensus 63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~-ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 140 (383)
.+...|.+++.-++|..|+.+|+.+ . .....++.+.. +..+++..+++.++.++..++. . .++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~-~pe----- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI-EYK----- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH-CTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc-CHH-----
Confidence 3444444666678999999988887 2 12457788887 6667889999999999999885 2 222
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142 141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
..++.+.....+++..++..|...+.-.+.... . ..+. -+++.+-.+..++ +.-||+...+.|..++..+|
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~-~---k~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY-F---KENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT-T---TTCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch-h---hcCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence 256888999999999999999988865443211 1 0111 2344444555555 89999999999999999998
Q ss_pred HHHHHHHh
Q 037142 220 EQIQAVID 227 (383)
Q Consensus 220 ~~~~~~~~ 227 (383)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777764
No 119
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.97 E-value=0.067 Score=47.13 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=98.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHH-HHHH---------
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQ-IKYL--------- 268 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~l--------- 268 (383)
+......++++|..+... ......++ ....+..+...+.+..+.++..|...|+.+|....++. ...+
T Consensus 133 d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 456778899999988644 46666676 46678899999999999999999999998887643111 2211
Q ss_pred -HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142 269 -EREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK 346 (383)
Q Consensus 269 -~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~ 346 (383)
-+..-+..+++.++. .+.+.+..++..+..++...+... ..-.++..|...|..+.+..+-..+++++...
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 123457888898886 466777777776666666543221 12346667889999999999887777776443
Q ss_pred H
Q 037142 347 S 347 (383)
Q Consensus 347 a 347 (383)
.
T Consensus 285 i 285 (383)
T 3eg5_B 285 L 285 (383)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.90 E-value=0.1 Score=41.94 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=101.8
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC-CCCCCCh
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG-GKPRPIF 96 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 96 (383)
.++.+..+..++..++|..|+..|+.. ... ...++.+...+..+.+-.+++.+..++..++. ..+..
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 345556666777789999999988877 311 12245555534467889999999999999985 33332
Q ss_pred hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~ 176 (383)
.++.+.....+++..+|+.++..+.--+.. +.. ..-. .-+++.+-.+..+++.-|+....+.|..++..++
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~--k~dp-~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF--KENP-NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT--TTCH-HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh--hcCH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 667888999999999999999887543322 111 0000 1146777777788999999999999999998888
Q ss_pred cccccee
Q 037142 177 SQTLYII 183 (383)
Q Consensus 177 ~~~~~l~ 183 (383)
+.+..++
T Consensus 211 d~V~~~~ 217 (240)
T 3l9t_A 211 DLVKIEL 217 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554333
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.48 E-value=0.38 Score=42.41 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=96.8
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHH-HHHH---------
Q 037142 200 KTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQ-IKYL--------- 268 (383)
Q Consensus 200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~l--------- 268 (383)
+......++++|..++.. ......++ ....+..+...+.++++.++..+...|..+|....+.. ...+
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456778899999888654 45666666 46678888888888899999999888888877643111 1111
Q ss_pred -HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142 269 -EREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK 346 (383)
Q Consensus 269 -~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~ 346 (383)
-+..-+..+++.+.. .+.+.+..++..+..++...+..+ ..-.++.-|..+|..+.+..+...+++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 123466778888874 456777777777766666554322 12356777889999999999988888877544
Q ss_pred H
Q 037142 347 S 347 (383)
Q Consensus 347 a 347 (383)
.
T Consensus 223 i 223 (386)
T 2bnx_A 223 L 223 (386)
T ss_dssp H
T ss_pred H
Confidence 3
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.58 E-value=1.3 Score=45.67 Aligned_cols=312 Identities=10% Similarity=0.026 Sum_probs=157.7
Q ss_pred HHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-CCCChhHHHHHHHHHHhhcCCC-CCCCh
Q 037142 20 PIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-NHENLSMKRIATWTLSNLCGGK-PRPIF 96 (383)
Q Consensus 20 ~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~~~~~~a~~~L~~l~~~~-~~~~~ 96 (383)
..+...++. .+.+.|.+|-..|..+-... .....+...|. .+.+..++..|+..|.+..... .....
T Consensus 15 ~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 15 KAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 333344443 46778888888887764322 23444555443 4567889999999999887543 11122
Q ss_pred hhhhchhHHHHHhhcc-------CCHHHHHHHHHHHHHhccCCCch-HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 97 DQVRPCLPTLAQLVHS-------NDEHVMSNACWGLSLLCDGGKND-EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
.....+=..++..+.. ....++..++.++..++.. .-+ .. .++++.++.++.. ++.....++.+|
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~-d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR-EWPQHW-----PDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH-HSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH-hCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 2222233334444321 4578889999999988865 211 11 2467778877765 445677788888
Q ss_pred hhhhcCCCcc--c-----c----ceecC--CChHHHHHhhccc------------------cchhHHHHHHHHHHHHhcC
Q 037142 169 GNIARGDYSQ--T-----L----YIINC--GALPYLLGLLIDN------------------HKTSIKNYACWIISNITAG 217 (383)
Q Consensus 169 ~~l~~~~~~~--~-----~----~l~~~--~~i~~l~~ll~~~------------------~~~~~~~~a~~~l~nl~~~ 217 (383)
..++...... . . .+.+. .++..+..++... .+..+...++.++.+...-
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 8886431100 0 0 00000 1222233333220 1234556666666655432
Q ss_pred CHHHHHHHHhcC--ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHc---CChHHHHhhcC--------C
Q 037142 218 NREQIQAVIDAG--LIGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQIKYLERE---GCIKPLCDLLL--------C 283 (383)
Q Consensus 218 ~~~~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~~---~~i~~L~~ll~--------~ 283 (383)
-+- ..+++.. +++.+..++. +++++..|+.+|..++.... ++....++.. ..+..++.... +
T Consensus 238 i~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e 313 (1204)
T 3a6p_A 238 VSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE 313 (1204)
T ss_dssp SCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH
T ss_pred cCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCcc
Confidence 211 1222322 4555554433 67899999999999997642 3332222220 01223344321 1
Q ss_pred CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142 284 PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 284 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 358 (383)
.+.++.+..+..+..+...-...-...........+. +.++.+.++..+++..+...+...-..++...
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~------~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFG------KYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHH------HHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHH------HHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 2345555555555554421110000000000111111 23466666777777777777766555555543
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.50 E-value=0.33 Score=41.17 Aligned_cols=136 Identities=7% Similarity=-0.009 Sum_probs=82.9
Q ss_pred hhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142 102 CLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178 (383)
Q Consensus 102 ~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 178 (383)
++..+...+.+ ..+..+.-++++++|+... ......+... .+++.+...+.+++..++..+...+.|++...-..
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~--~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVG--QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS--HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCC--chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 33344455543 3466788899999999987 4444444322 35566666666788899999999999998431110
Q ss_pred ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
...-....++..+..++....+.+....++.++++++..+++..+..-..++-..+-.+..
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 0000011244555566655558889999999999999887554443333444444444443
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.31 E-value=1.2 Score=37.67 Aligned_cols=129 Identities=11% Similarity=0.093 Sum_probs=80.6
Q ss_pred HHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhc--CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhh
Q 037142 23 VKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGE--AALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQ 98 (383)
Q Consensus 23 ~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~ 98 (383)
...+.+ ..+..+..+++++.|+... +..++.+... .+++.+...+ .+++..++..+..++.|++... ..+....
T Consensus 153 ~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 153 INLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 344443 4577899999999999875 4566666542 2233333333 4568889999999999998753 1222223
Q ss_pred hhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHH-hCcHHHHHHhcCC
Q 037142 99 VRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIE-AGVCPRLVKLLGH 155 (383)
Q Consensus 99 ~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~l~~~L~~ 155 (383)
...++..+..+++ .+|.+....++.+|+++... +.+ ...+.+ .|+-..+-...+.
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~-~~~-~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISD-DSN-AVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT-CHH-HHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC-Chh-HHHHHHHcCHHHHHHHHHhC
Confidence 3445555666665 45899999999999999976 433 333333 3443333334433
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.27 E-value=0.76 Score=40.42 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=84.3
Q ss_pred CChHHHHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN 73 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~ 73 (383)
......+.|+ .+++..|+..|.. .+..++..++.||..+..........+-....+..+...| .+++
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~ 175 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV 175 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTS
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCc
Confidence 3456677787 5677888888742 2457888999999999865434444444456788888888 7888
Q ss_pred hhHHHHHHHHHHhhcCCCC-CCChhhh------------hchhHHHHHhhcc-CCHHHHHHHHHHHHHhccC
Q 037142 74 LSMKRIATWTLSNLCGGKP-RPIFDQV------------RPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~~-~~~~~~~------------~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~ 131 (383)
+.++..++..|+-+|.... .-....+ ..-+..++..+.+ .+.+.+..+...+..+...
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 9999999999999998753 2101111 1224455566665 4677777777777777765
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.27 E-value=0.72 Score=46.62 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=84.3
Q ss_pred hhHHHHHhhcc----CCHHHHHHHHHHHHHhccCC---CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142 102 CLPTLAQLVHS----NDEHVMSNACWGLSLLCDGG---KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174 (383)
Q Consensus 102 ~i~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~ 174 (383)
.+..+..++.+ .++.++..++.+++.+.... ........+. .+...+.+.+...+..-+..++++|+|+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 55566666653 45677777777776665421 1100001111 123344455556777788899999999963
Q ss_pred CCccccceecCCChHHHHHhhcc------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh--cCchhHH
Q 037142 175 DYSQTLYIINCGALPYLLGLLID------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ--NAVFYIK 246 (383)
Q Consensus 175 ~~~~~~~l~~~~~i~~l~~ll~~------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~ 246 (383)
+ ..++.+.+++.. .....++..|+++|.+++...+...+. .++++.. ..++++|
T Consensus 470 -p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~--------il~~i~~n~~e~~EvR 531 (1056)
T 1lsh_A 470 -P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE--------IVLPIFLNVAIKSELR 531 (1056)
T ss_dssp -G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH--------HHHHHHHCTTSCHHHH
T ss_pred -h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH--------HHHHHhcCCCCChHHH
Confidence 2 246677777642 113568889999999998766554433 4666764 4688999
Q ss_pred HHHHHHHHHh
Q 037142 247 KEAAWAISNA 256 (383)
Q Consensus 247 ~~a~~~l~~l 256 (383)
..|+..|...
T Consensus 532 iaA~~~Lm~t 541 (1056)
T 1lsh_A 532 IRSCIVFFES 541 (1056)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998888654
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.26 E-value=1.8 Score=43.71 Aligned_cols=172 Identities=14% Similarity=0.125 Sum_probs=111.9
Q ss_pred hHHHHHHhcCC---CChhHHHHHHHHHHhhc----CCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC
Q 037142 61 LIPLLTQLNNH---ENLSMKRIATWTLSNLC----GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK 133 (383)
Q Consensus 61 i~~L~~~L~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 133 (383)
+..+..++... .++.++..++-+++.+. .+.+.+....+..+...+.+.+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 34455555321 24566776766666664 4434444444566666677777788888889999999999853
Q ss_pred chHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc-ccchhHHH
Q 037142 134 NDEIQAVIEAGVCPRLVKLLGH-------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID-NHKTSIKN 205 (383)
Q Consensus 134 ~~~~~~~~~~~~i~~l~~~L~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~-~~~~~~~~ 205 (383)
..++.+..++.. ....++..|+++|+.+....+.. +-+.++++..+ ..++++|.
T Consensus 471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHH
T ss_pred ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHH
Confidence 246777777642 23468888999999998544321 34567777732 23788999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCH
Q 037142 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTH 262 (383)
Q Consensus 206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~ 262 (383)
.|+..|.... .+.. .+..+...+.. ++.+|+.-....|.+++....+
T Consensus 533 aA~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 9988875432 2222 24455556654 6888888888899999887654
No 128
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.07 E-value=0.62 Score=40.84 Aligned_cols=238 Identities=14% Similarity=0.015 Sum_probs=120.8
Q ss_pred hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142 7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN 86 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~ 86 (383)
+...+..++...+..|+.++.++|+.-|...-.+|..+-..-...|..+. ..+-..+.+++.....-.=....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 34445555556678899999999999999999999988766555555443 22234455555322222223345555665
Q ss_pred hcCCCCCCC-hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142 87 LCGGKPRPI-FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164 (383)
Q Consensus 87 l~~~~~~~~-~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a 164 (383)
+..+-..+- .....=....|+.+-+.+. ..-..+...|+...... ++..... ++..++..--..++.=...-
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~L~~~-----vi~~LLk~WP~tns~KevlF 271 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEP-----VVMALLKYWPKTHSPKEVMF 271 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHTCCSSCHHHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-CchhHHH-----HHHHHHHhCCCCCcHHHHHH
Confidence 555432221 1111123344444544443 22334455555555544 3322222 22333333333333333333
Q ss_pred HHHHhhhhcCCC-ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---cCChHHHHHHhhc
Q 037142 165 LHTVGNIARGDY-SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---AGLIGPLVNLLQN 240 (383)
Q Consensus 165 ~~~L~~l~~~~~-~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~ 240 (383)
+.-+..+...-+ ...+. +...++..+..++.++ +-.|.+.|+....| +....++. ..++|.+...+..
T Consensus 272 L~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~ 343 (403)
T 3fga_B 272 LNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYR 343 (403)
T ss_dssp HHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 343444443221 11111 1112455666777787 88888887765422 22222221 2245555555532
Q ss_pred ----C-chhHHHHHHHHHHHhcCC
Q 037142 241 ----A-VFYIKKEAAWAISNATFG 259 (383)
Q Consensus 241 ----~-~~~v~~~a~~~l~~l~~~ 259 (383)
. +..++..+..++.-+...
T Consensus 344 ~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 344 NSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHHHHh
Confidence 2 778888888887776544
No 129
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.01 E-value=2.1 Score=43.99 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=147.2
Q ss_pred CChHHHHHhh--CCCChHHHHHHHHHHHHHhcC-----ChHHHHHHHhcCChHHHHHHhcC--CCChhHHHHHHHHHHhh
Q 037142 17 GAVPIFVKLL--ASPSDDIRMQSVWALGNIAAE-----SPRFRDLVLGEAALIPLLTQLNN--HENLSMKRIATWTLSNL 87 (383)
Q Consensus 17 g~i~~L~~lL--~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~~~~~g~i~~L~~~L~~--~~~~~~~~~a~~~L~~l 87 (383)
+....+...| .+.++.+|..|+..|.+.... +++.+..+. ..++..+.+.-.. ..+..++...+.++..+
T Consensus 45 ~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~I 123 (1204)
T 3a6p_A 45 PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEM 123 (1204)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 4555555544 346889999999999887632 334444443 2333333322111 14578888999999998
Q ss_pred cCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC------CchHHH----HHHHh--CcHHHHHHhcC
Q 037142 88 CGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG------KNDEIQ----AVIEA--GVCPRLVKLLG 154 (383)
Q Consensus 88 ~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~------~~~~~~----~~~~~--~~i~~l~~~L~ 154 (383)
+... |. ...++++.+.+++.+ ++.....++.+|..+++.. ...... .+.+. .+++.+...+.
T Consensus 124 a~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~ 198 (1204)
T 3a6p_A 124 IKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ 198 (1204)
T ss_dssp HHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 32 246788888888866 5566777777877776420 011111 11111 12333333332
Q ss_pred C-------------------CChhhHHHHHHHHhhhhcCCCccccceecC--CChHHHHHhhccccchhHHHHHHHHHHH
Q 037142 155 H-------------------PSQSVLTQALHTVGNIARGDYSQTLYIINC--GALPYLLGLLIDNHKTSIKNYACWIISN 213 (383)
Q Consensus 155 ~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~l~~ll~~~~~~~~~~~a~~~l~n 213 (383)
+ ++..+...++.++.+...--+. ..+.+. .+++.+..++. ++.++..|+.+|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~ 273 (1204)
T 3a6p_A 199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLI 273 (1204)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 2 2345677788888766543221 112232 25666665554 56899999999999
Q ss_pred HhcCC--HHHHHHHHh---cCChHHHHHHhh--------cCchhHHHHHHHHHHHhcCCCCHHHHHHHHH----------
Q 037142 214 ITAGN--REQIQAVID---AGLIGPLVNLLQ--------NAVFYIKKEAAWAISNATFGGTHEQIKYLER---------- 270 (383)
Q Consensus 214 l~~~~--~~~~~~~~~---~~~l~~L~~ll~--------~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~---------- 270 (383)
++... ++....++. ...+..++.... ..+.++.+..+.++..+.. . ...++.
T Consensus 274 i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~ 348 (1204)
T 3a6p_A 274 AVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN----Q-LCALLGADSDVETPSN 348 (1204)
T ss_dssp HHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTT
T ss_pred HHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH----H-HHHHHhccccccChhH
Confidence 98743 343333332 111334445432 2245667777777766651 1 222221
Q ss_pred -cCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142 271 -EGCIKPLCDLLLCPDPQIVTVCLKALENIL 300 (383)
Q Consensus 271 -~~~i~~L~~ll~~~~~~v~~~al~~l~~l~ 300 (383)
.++++.++.++.+++..+-..++..-..++
T Consensus 349 l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll 379 (1204)
T 3a6p_A 349 FGKYLESFLAFTTHPSQFLRSSTQMTWGALF 379 (1204)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHhHHHHHHHHHHHH
Confidence 134666777776666665555554433343
No 130
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.95 E-value=0.47 Score=38.53 Aligned_cols=125 Identities=10% Similarity=0.061 Sum_probs=82.4
Q ss_pred CChHHHHHHHhCCChHHHHHhhCC----C-------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLAS----P-------SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN 73 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~----~-------~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~ 73 (383)
.+....+.| ..+++..|+..|.. + +.+.+..++.||..+..........+-..+.+..+...| .+++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~ 109 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV 109 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTS
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCC
Confidence 345667777 46777777777653 1 457788899999999865544444444456788888888 7888
Q ss_pred hhHHHHHHHHHHhhcCCCCCCC-hhhh------------hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccC
Q 037142 74 LSMKRIATWTLSNLCGGKPRPI-FDQV------------RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~~~~~-~~~~------------~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~ 131 (383)
..++..++..|+-+|..+.... ...+ ..-+..++..+. +.+.+.+..+...+..+...
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 9999999999999988753111 1111 113334555555 34567777777777777766
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=92.32 E-value=1.4 Score=39.30 Aligned_cols=234 Identities=13% Similarity=0.004 Sum_probs=123.3
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142 11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG 90 (383)
Q Consensus 11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (383)
+..++...+..|+.++.++|+.-|...-.+|..+-..-...|..+... +-..+.+++.....-.=....+.+++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 344455567789999999999999999999988876544555444322 2344556653333223344667777777766
Q ss_pred CCCCC-hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142 91 KPRPI-FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV 168 (383)
Q Consensus 91 ~~~~~-~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L 168 (383)
-..+- .....-....|+.+.+.+. ..-..+...|+...... ++..... ++..|+..--..++.=...-+.-|
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~L~~~-----vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence 42221 1111223344555555444 22333455566555544 3322222 233344443334433333334444
Q ss_pred hhhhcCCC-ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---cCChHHHHHHhhc----
Q 037142 169 GNIARGDY-SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---AGLIGPLVNLLQN---- 240 (383)
Q Consensus 169 ~~l~~~~~-~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~---- 240 (383)
..+...-+ ...+.+ ...+...+..++++. +-.|.+.|+....| +.. ..++. ..++|.+...+..
T Consensus 309 eeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 309 EEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHH
Confidence 44443221 111111 113456667777887 88888888765432 121 22221 2245666666532
Q ss_pred -CchhHHHHHHHHHHHhcCC
Q 037142 241 -AVFYIKKEAAWAISNATFG 259 (383)
Q Consensus 241 -~~~~v~~~a~~~l~~l~~~ 259 (383)
=+..++..|..++.-+...
T Consensus 381 HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 1677888888888777665
No 132
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.28 E-value=0.34 Score=35.50 Aligned_cols=78 Identities=8% Similarity=0.135 Sum_probs=54.1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHh-ccHHHHHHHhcCCC--------HHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEA-KGLEKIENLQRHDN--------YEI 343 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~L~~l~~~~~--------~~v 343 (383)
+++.|.+-|+.+++.++..|+..|..++..+... +.+-+... ..++.+.+....++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 5778888888889999999999999999765432 34434333 23333333322222 579
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 037142 344 HEKSAKILETYWCGRVVGP 362 (383)
Q Consensus 344 ~~~a~~~l~~~~~~~~~~~ 362 (383)
+.+|.+++..+|.++...+
T Consensus 118 R~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 118 RETAHETISAIFSEENGSG 136 (140)
T ss_dssp HHHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 9999999999999877543
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.92 E-value=0.29 Score=36.10 Aligned_cols=74 Identities=4% Similarity=-0.072 Sum_probs=58.0
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~ 304 (383)
+..+..-+.+.++.++..|...|-.+..+++......+.+..++..|..++...++.|+..++..+..-.....
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 44566667788889999999999988888887777676666778888888877788999999988877765443
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.84 E-value=4.2 Score=33.34 Aligned_cols=153 Identities=11% Similarity=0.097 Sum_probs=96.0
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh--------cC
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL--------CG 89 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l--------~~ 89 (383)
+++.++.+..+++.++|...+..+...+...++....+ ++.|..++ ++.++.+.+.++.+.+++ +.
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~-----l~~L~~Ll-~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV-----INVVSMLL-RDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666566888999999998888876555444333 67788888 578899988888766665 33
Q ss_pred CCCC-----CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc--CCC-ch------------------HH--HHH-
Q 037142 90 GKPR-----PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD--GGK-ND------------------EI--QAV- 140 (383)
Q Consensus 90 ~~~~-----~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~--~~~-~~------------------~~--~~~- 140 (383)
++.. ..+.....+=..++.+..+.+..++..++.++..+.. ... .+ .. ..+
T Consensus 128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le 207 (257)
T 3gs3_A 128 LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQ 207 (257)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHH
Confidence 3221 1233345666677888888899999999988876541 100 00 00 111
Q ss_pred -HHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhhhcCCC
Q 037142 141 -IEAGVCPRLVKLLGHP--SQSVLTQALHTVGNIARGDY 176 (383)
Q Consensus 141 -~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l~~~~~ 176 (383)
-..+.+..|+.++.++ ++.....++.+|..++..-+
T Consensus 208 ~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP 246 (257)
T 3gs3_A 208 EEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP 246 (257)
T ss_dssp HHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc
Confidence 1124666677766654 33345677777777776554
No 135
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.81 E-value=4.2 Score=35.77 Aligned_cols=152 Identities=10% Similarity=0.102 Sum_probs=92.9
Q ss_pred CChHHHHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC
Q 037142 5 KTLEDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN 73 (383)
Q Consensus 5 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~ 73 (383)
.+......|. .+++..|+..|.. .+.+.+..++.||..+..........+-..+.+..+...| .+++
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCC
Confidence 3456677776 4667777777642 1457788899999999865544444454557788888888 6778
Q ss_pred hhHHHHHHHHHHhhcCCCCCCC-hhhh------------hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCch-HH-
Q 037142 74 LSMKRIATWTLSNLCGGKPRPI-FDQV------------RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKND-EI- 137 (383)
Q Consensus 74 ~~~~~~a~~~L~~l~~~~~~~~-~~~~------------~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~-~~- 137 (383)
+.++..++..|+.+|..+.... ...+ ..-+..++..+. ..+.+.+..++..+..+... +++ ..
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~-~~dl~~R 192 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP-AEELDFR 192 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC-CCCHHHH
Confidence 8999999999999998653111 1111 112333444444 44567777777777777766 332 11
Q ss_pred ----HHHHHhCcHHHHHHhcCC-CChhh
Q 037142 138 ----QAVIEAGVCPRLVKLLGH-PSQSV 160 (383)
Q Consensus 138 ----~~~~~~~~i~~l~~~L~~-~~~~v 160 (383)
..+...|+ ..++..|+. +++.+
T Consensus 193 ~~LR~Ef~~~GL-~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 193 VHIRSELMRLGL-HQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHHHTTH-HHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHCCh-HHHHHHHhccCChhH
Confidence 12344454 444555554 44433
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.39 E-value=0.54 Score=35.67 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=58.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l 351 (383)
.+..|.+-+.++++.++..|+..|..++..++.. +...+....+++.|..+... .++.|++++..++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 3556666677889999999999999999876543 55556666777777777665 6679999999999
Q ss_pred HHhcCCCCCCC
Q 037142 352 ETYWCGRVVGP 362 (383)
Q Consensus 352 ~~~~~~~~~~~ 362 (383)
..+...-..+|
T Consensus 121 ~~W~~~f~~~~ 131 (163)
T 1x5b_A 121 VEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHTTTCS
T ss_pred HHHHHHhcCCc
Confidence 88776544433
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.77 E-value=0.42 Score=35.23 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=57.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILE 352 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 352 (383)
.+..|..-+.++++.++..|+..|..++..++.. +...+....+++.+..+....++.|++++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4566667777889999999999999999876643 4445555666777777777788999999999998
Q ss_pred HhcCCCC
Q 037142 353 TYWCGRV 359 (383)
Q Consensus 353 ~~~~~~~ 359 (383)
.+...-.
T Consensus 111 ~W~~~f~ 117 (140)
T 3ldz_A 111 EWTDEFK 117 (140)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8765443
No 138
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.64 E-value=0.96 Score=37.79 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHhhhhcCCCcccccee-cCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh--cCChHH
Q 037142 157 SQSVLTQALHTVGNIARGDYSQTLYII-NCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID--AGLIGP 233 (383)
Q Consensus 157 ~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~--~~~l~~ 233 (383)
+......++..|-.++..-....+..- +...+..|+ +.... .+.+++.|.++|+....++|.....+.+ ..++..
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 444567777777777754443333222 223333333 22344 6779999999999999999999988875 445555
Q ss_pred HHHHhhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 037142 234 LVNLLQN-------AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKALENILK 301 (383)
Q Consensus 234 L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~ 301 (383)
+..-|.. ....+.+.-+.+|.-|.... .. + ....+..|.+++... +++++..++..+..+..
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--ED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 5554433 23356666677777777662 11 1 134667777777666 88999999999888885
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=90.46 E-value=0.66 Score=34.52 Aligned_cols=74 Identities=8% Similarity=-0.055 Sum_probs=60.7
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhch
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~~ 304 (383)
+..|..-+.+.++.++..|...|-.+..+++......+.+..++.-|+.++.. .++.|+..++..+..-.....
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44566667788999999999999999999888888887788899999998863 467899999998887776543
No 140
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.41 E-value=6.9 Score=34.35 Aligned_cols=238 Identities=14% Similarity=0.077 Sum_probs=119.4
Q ss_pred hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHH
Q 037142 49 PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSL 127 (383)
Q Consensus 49 ~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~ 127 (383)
+...+..++...+..|+.++ +++|+.-|...-.+|.++-..-.......-..+-..+.+++... ...-....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lf-dSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 33344444455677788888 78899888888888887765431111111122333444444422 11112233444444
Q ss_pred hccCCCc---hHHHHHHHhCcHHHHHHhcCCCChhh-HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH
Q 037142 128 LCDGGKN---DEIQAVIEAGVCPRLVKLLGHPSQSV-LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI 203 (383)
Q Consensus 128 l~~~~~~---~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~ 203 (383)
+..+... +....+ +...|+.+-+.+.-.. -.....++..+...++.... .++..++..--.. ++.-
T Consensus 198 IinGfa~PLkeehk~f----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~-----~vi~~LLk~WP~t-ns~K 267 (403)
T 3fga_B 198 IINGFALPLKEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----PVVMALLKYWPKT-HSPK 267 (403)
T ss_dssp HHHHCCSSCCHHHHHH----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHTCCSS-CHHH
T ss_pred HHcccCCCchHHHHHH----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHH-----HHHHHHHHhCCCC-CcHH
Confidence 4433211 222222 2344455555543322 24455666666666654332 2233333333222 2222
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---C----ChH
Q 037142 204 KNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---G----CIK 275 (383)
Q Consensus 204 ~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~----~i~ 275 (383)
...-+.-+..+.. .++...+.+. ..++..+..++.+++.+|.+.|..... + +....++.. . +++
T Consensus 268 evlFL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~hfqVAErAL~~wn------N-e~i~~li~~n~~~IlPii~p 339 (403)
T 3fga_B 268 EVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWN------N-EYIMSLISDNAAKILPIMFP 339 (403)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGG------C-HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHhc------c-HHHHHHHHHhHHHHHHHHHH
Confidence 2223333444443 2333333332 336778888889999999988765541 1 222222221 1 344
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHHHHHHhchh
Q 037142 276 PLCDLLL-CPDPQIVTVCLKALENILKVGEA 305 (383)
Q Consensus 276 ~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~ 305 (383)
.|.+..+ +-+..++..+..++..+.+.+..
T Consensus 340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 340 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHHHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 4555444 34778888898998887766554
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.87 E-value=1.4 Score=32.82 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=59.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK 346 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~ 346 (383)
.+..|..-+.++++.++..|+..|..++..++. .+...+....+++.|..+... .+..|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 456666667889999999999999999987654 366667777888888888763 47899999
Q ss_pred HHHHHHHhcCCCCC
Q 037142 347 SAKILETYWCGRVV 360 (383)
Q Consensus 347 a~~~l~~~~~~~~~ 360 (383)
+..++..+...-..
T Consensus 107 il~li~~W~~~f~~ 120 (148)
T 1mhq_A 107 VIEILFSWTVWFPE 120 (148)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCC
Confidence 99999887655433
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.84 E-value=1.4 Score=33.62 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=58.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK 346 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~ 346 (383)
.+..|..-+.++++.++..|+..|..++..++.. +...+....+++.|..+... .+.+|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4566777778899999999999999999887643 56667777788888888752 46789999
Q ss_pred HHHHHHHhcCCCC
Q 037142 347 SAKILETYWCGRV 359 (383)
Q Consensus 347 a~~~l~~~~~~~~ 359 (383)
+..++..+...-.
T Consensus 119 il~li~~W~~~f~ 131 (171)
T 1juq_A 119 VIELLYSWTMALP 131 (171)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcC
Confidence 9999988765543
No 143
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.63 E-value=9.9 Score=33.21 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
..+...+.-+..+..+.+. . ++ .++++.++.+..+. +..+|+.++..+...+....+.. ...++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp--s-Ll-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP--T-LL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG--G-GG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCH--H-HH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3566666667776543321 1 22 36888899888887 89999999999988875443332 23566788888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---------------ChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREG---------------CIKPLCDLLLCPDPQIVTVCLKALENILK 301 (383)
Q Consensus 239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~---------------~i~~L~~ll~~~~~~v~~~al~~l~~l~~ 301 (383)
.+.++.+.+.++.+.+++- +...++++..+ +-..++.+.++.+..++..+++.+..++-
T Consensus 110 ~d~d~~V~K~~I~~~tslY----pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLY----KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHH----HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH----HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 8888899998888777763 22333333322 33456677788899999999999988874
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.62 E-value=4.1 Score=36.41 Aligned_cols=233 Identities=14% Similarity=0.077 Sum_probs=121.8
Q ss_pred HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccC
Q 037142 53 DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 53 ~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~ 131 (383)
+..++...+..|+.++ +++|+.-|...-.+|..+-..-.......-..+-..+.+++... ...-....+..++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 3344555677888888 78899888888888888776543332222233444455555432 222333455666666655
Q ss_pred CCc---hHHHHHHHhCcHHHHHHhcCCCChhh-HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHH
Q 037142 132 GKN---DEIQAVIEAGVCPRLVKLLGHPSQSV-LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYA 207 (383)
Q Consensus 132 ~~~---~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a 207 (383)
... +....+ +...|+.+.+.+.-.. -.....++..++..++.... .++..|+..--.. +..=...-
T Consensus 235 fa~PLKeehk~f----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~-----~vi~~LLk~WP~t-ns~KevlF 304 (449)
T 2npp_B 235 FALPLKEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----PVVMALLKYWPKT-HSPKEVMF 304 (449)
T ss_dssp CCSSCCHHHHHH----HHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHTCCSS-CHHHHHHH
T ss_pred cCCCCcHHHHHH----HHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHH-----HHHHHHHHhCCCC-CchHHHHH
Confidence 321 222222 2344555555544322 23445666666665554332 2233333333222 22222223
Q ss_pred HHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhc--
Q 037142 208 CWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLL-- 281 (383)
Q Consensus 208 ~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll-- 281 (383)
+.-+..+.. ..+...+.+. ..++..+..++.+++.+|.+.|.....| +....++.. .++|.++..+
T Consensus 305 L~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~N-------~~i~~li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 305 LNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNN-------EYIMSLISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGC-------HHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHCC-------HHHHHHHHhchhhhHHhhHHHHHH
Confidence 333444443 2333333332 3367788888899999999887654321 222222221 2344444433
Q ss_pred --C-CCCHHHHHHHHHHHHHHHHhch
Q 037142 282 --L-CPDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 282 --~-~~~~~v~~~al~~l~~l~~~~~ 304 (383)
+ +-+..++..+..++..+.+.+.
T Consensus 377 ~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 377 NSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp CTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence 2 2366788888888887776544
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=89.50 E-value=1.4 Score=32.69 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=58.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR------HDNYEIHEK 346 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~------~~~~~v~~~ 346 (383)
.+..|..-+.++++.++..|+..|..++..++.. |...+....+++.|..+.. ..+..|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4556666777899999999999999999877643 5566777778888888875 357899999
Q ss_pred HHHHHHHhcCCCC
Q 037142 347 SAKILETYWCGRV 359 (383)
Q Consensus 347 a~~~l~~~~~~~~ 359 (383)
+..++..+...-.
T Consensus 117 il~li~~W~~~f~ 129 (149)
T 3g2s_A 117 ILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhC
Confidence 9999988766543
No 146
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.44 E-value=0.76 Score=34.84 Aligned_cols=72 Identities=4% Similarity=-0.035 Sum_probs=57.3
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKV 302 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~ 302 (383)
+..|..-+.+.++.++..|..+|-.+..+++......+.+..++..|+.++.. .++.|+..++..+..-...
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 44566677888999999999999999998887777777777788888887765 5778999888877766654
No 147
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.44 E-value=2.5 Score=36.98 Aligned_cols=137 Identities=15% Similarity=0.069 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 037142 203 IKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL 281 (383)
Q Consensus 203 ~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll 281 (383)
.+...+.-+..++. .++. +=.++++.++.+-.+++.++|+..+.+|...+.. ..+.... +++.|..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence 45556665666543 2222 2256888899888888999999999999877743 2222222 677888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc----ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142 282 LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD----VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355 (383)
Q Consensus 282 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 355 (383)
.++++.+.+.++.+..++....-..-.. ... ....+..+... ...+..+.++.+..|+-.|.+.++.+.
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~---~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVK---SRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHH---C-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 8899999988888777766422111000 001 12344444333 456777888999999999999888865
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.28 E-value=1.4 Score=32.78 Aligned_cols=73 Identities=8% Similarity=-0.149 Sum_probs=60.0
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhc
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVG 303 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~ 303 (383)
+..+..-+.+.++.++..|...|-.+..+++......+.+..++..|+.++.. .++.|+..++..+..-....
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45566677889999999999999999999888888888788899999998864 36789999988887776543
No 149
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=88.61 E-value=2.3 Score=35.57 Aligned_cols=150 Identities=9% Similarity=0.051 Sum_probs=96.2
Q ss_pred hchhHHHHHhhccC------CHHHHHHHHHHHHHhccCCCchHHHHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142 100 RPCLPTLAQLVHSN------DEHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172 (383)
Q Consensus 100 ~~~i~~l~~ll~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~ 172 (383)
+.-+..+..+++++ +.+....++..|..++.. ..-..+.+. +...+..|+ +....++.++..+.++|+...
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL 98 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCL 98 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH
Confidence 44455566666655 455677788888888865 222223332 223344444 334467789999999999999
Q ss_pred cCCCccccceec--CCChHHHHHhhcc-------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--
Q 037142 173 RGDYSQTLYIIN--CGALPYLLGLLID-------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-- 241 (383)
Q Consensus 173 ~~~~~~~~~l~~--~~~i~~l~~ll~~-------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-- 241 (383)
+++|.....+.+ ..++..+..-|.. . ...+++.-+.+|..|...+... ....+..|..++...
T Consensus 99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~ 172 (315)
T 3qml_C 99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNK 172 (315)
T ss_dssp TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCC
Confidence 999876665544 3455555544432 2 3467888888888888765222 244667788877766
Q ss_pred chhHHHHHHHHHHHhc
Q 037142 242 VFYIKKEAAWAISNAT 257 (383)
Q Consensus 242 ~~~v~~~a~~~l~~l~ 257 (383)
+..+|..+...+..+-
T Consensus 173 d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 173 DKQLQIKVLELISKIL 188 (315)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc
Confidence 8889998888877665
No 150
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.37 E-value=9.4 Score=31.28 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh
Q 037142 202 SIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDL 280 (383)
Q Consensus 202 ~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~l 280 (383)
..+...+.-...++.. ++... .++++.++.+..+++.++|+..+.+|...+.. ..+... .+++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHH
Confidence 4666666666665543 22222 33566667766677889999999998877733 222222 267888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc----ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142 281 LLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD----VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355 (383)
Q Consensus 281 l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 355 (383)
+.++++.+.+.++.+..++....-..-.. ... ....+..+.. ....+.++.++.+..++-.|.+.++...
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~---~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCS---LMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTT---SSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 99889999999888877776543221111 111 1234444433 3467777888999999999999888765
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.57 E-value=1.5 Score=33.51 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=58.2
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKV 302 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~ 302 (383)
+..|..-+.+.++.++..|..+|-.+..+++......+.+..++..|+.++.. .++.|+..++..+..-...
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999998877777777777888999998863 3578999998888777654
No 152
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=85.18 E-value=5.7 Score=39.73 Aligned_cols=186 Identities=12% Similarity=0.027 Sum_probs=113.2
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC---CCChhHHHHHHHHHH--hhcCCCCC
Q 037142 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN---HENLSMKRIATWTLS--NLCGGKPR 93 (383)
Q Consensus 19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~---~~~~~~~~~a~~~L~--~l~~~~~~ 93 (383)
+.-|+++-.+..++||..|-.+|......-+..+..+ ++.+++.|.. +.+.+-.+-|+++|. .+... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 4566676677889999999999999887655555554 5778888754 444444555666554 22111 12
Q ss_pred CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc-----------------------hHHHHH----------
Q 037142 94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-----------------------DEIQAV---------- 140 (383)
Q Consensus 94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-----------------------~~~~~~---------- 140 (383)
.+.......++.+++....+.++++..+-.+...+...... ..+...
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888887766666666555444333321000 000100
Q ss_pred HH---hCcHHHHHHhc-CCCC--hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHH
Q 037142 141 IE---AGVCPRLVKLL-GHPS--QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI 214 (383)
Q Consensus 141 ~~---~~~i~~l~~~L-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl 214 (383)
.. .++...++... .... ......++..|.++....+ ......++..+++.+.++ ++.+|..|+.++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 11 02333344555 2345 7777777777666653332 234446788888888888 999999999888665
Q ss_pred h
Q 037142 215 T 215 (383)
Q Consensus 215 ~ 215 (383)
.
T Consensus 364 l 364 (997)
T 1vsy_5 364 C 364 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 153
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.24 E-value=40 Score=33.79 Aligned_cols=275 Identities=11% Similarity=0.055 Sum_probs=142.4
Q ss_pred HHHhcCCCChhHHHHHHHHHHhhcCCCCCCC----hhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142 65 LTQLNNHENLSMKRIATWTLSNLCGGKPRPI----FDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQA 139 (383)
Q Consensus 65 ~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (383)
++-|-.+.+..-++.++.+++-+........ .....-+.|.|.+.+. .-.++.......++..+..+.++.....
T Consensus 513 ~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~ 592 (997)
T 1vsy_5 513 CESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKT 592 (997)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHH
Confidence 3334356678888899999999988763222 2233567888888887 3455555444444444333212212222
Q ss_pred HHH--------------------------------h-----CcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCC--cc-
Q 037142 140 VIE--------------------------------A-----GVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDY--SQ- 178 (383)
Q Consensus 140 ~~~--------------------------------~-----~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~--~~- 178 (383)
+++ . ..-+.+..+ +.++...|+.....+|..++...- ..
T Consensus 593 L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~ 672 (997)
T 1vsy_5 593 FFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSIS 672 (997)
T ss_dssp HHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCCBS
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccCCC
Confidence 111 0 111111111 466778999999999988875441 10
Q ss_pred -cccee-------------cCCChHH----HH---Hhhcc--------ccc----hh----HHHHHHHHHHHHhcCCHHH
Q 037142 179 -TLYII-------------NCGALPY----LL---GLLID--------NHK----TS----IKNYACWIISNITAGNREQ 221 (383)
Q Consensus 179 -~~~l~-------------~~~~i~~----l~---~ll~~--------~~~----~~----~~~~a~~~l~nl~~~~~~~ 221 (383)
.+.++ ....-+. +. +-+.. ... .. .+....|+...+..+....
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~ 752 (997)
T 1vsy_5 673 DPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVL 752 (997)
T ss_dssp CHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHH
T ss_pred CHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 00000 0000111 21 11210 000 01 1112223334443333222
Q ss_pred HHHHHhcCChHHHHHHhhcCch-hHHHH-HHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHH
Q 037142 222 IQAVIDAGLIGPLVNLLQNAVF-YIKKE-AAWAISNATFGG-THEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALE 297 (383)
Q Consensus 222 ~~~~~~~~~l~~L~~ll~~~~~-~v~~~-a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~ 297 (383)
...++..-++|.++.+....+. ++... |..++..++... .++.... ++..+.+... +++. .+..++..+.
T Consensus 753 l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq 826 (997)
T 1vsy_5 753 LVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQ 826 (997)
T ss_dssp HHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHH
Confidence 3333332277777777665544 66666 666777775443 4455554 3455666665 4566 7777777766
Q ss_pred HHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCC
Q 037142 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN-YEIHEKSAKILETYWCGR 358 (383)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~-~~v~~~a~~~l~~~~~~~ 358 (383)
.+.-..-..- ... +.....+.+..++.++. -+|++.|...|..+....
T Consensus 827 ~~~f~n~f~l-------~~~------~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 827 HFLSAELLQL-------TEE------EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHTTTS-------CTT------HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHc-------CHH------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 5554221100 001 11233567778899999 999999999998775443
No 154
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=82.88 E-value=1.6 Score=38.14 Aligned_cols=82 Identities=15% Similarity=0.014 Sum_probs=51.8
Q ss_pred HHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC 88 (383)
Q Consensus 9 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~ 88 (383)
..+..++...+..|+.++.++|+.-|.....+|..+-..-...|..+. ..+-..+.+++.....-.=....+.+++.+.
T Consensus 166 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 166 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp HHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 344455556677899999999999999999999887654445554443 2223456666633332233445666666666
Q ss_pred CCC
Q 037142 89 GGK 91 (383)
Q Consensus 89 ~~~ 91 (383)
.+-
T Consensus 245 ngf 247 (392)
T 2jak_A 245 NGF 247 (392)
T ss_dssp HTC
T ss_pred hcc
Confidence 554
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.01 E-value=3.3 Score=33.16 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=54.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l 351 (383)
.+..|..-+.++++.++..|+..|..++..++.. +...+.+..+++.|..+.. ..+.+|++++..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3555666677899999999999999999887642 4444555556666666644 46788999999998
Q ss_pred HHhcCCCC
Q 037142 352 ETYWCGRV 359 (383)
Q Consensus 352 ~~~~~~~~ 359 (383)
..+...-.
T Consensus 111 ~~W~~~f~ 118 (220)
T 1dvp_A 111 QTWAYAFR 118 (220)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 87765444
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.81 E-value=2.6 Score=33.84 Aligned_cols=74 Identities=11% Similarity=0.233 Sum_probs=54.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142 273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL 351 (383)
Q Consensus 273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l 351 (383)
.+..|..-+.++++.++..|+..|..++..++.. +...+....+++.|..++. ..+.+|++++..++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3556666677899999999999999999876643 4444555566666666654 46788999999999
Q ss_pred HHhcCCC
Q 037142 352 ETYWCGR 358 (383)
Q Consensus 352 ~~~~~~~ 358 (383)
..+...-
T Consensus 114 ~~W~~~f 120 (226)
T 3zyq_A 114 QAWAHAF 120 (226)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8776544
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=80.76 E-value=6.2 Score=29.54 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=54.2
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 037142 273 CIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK-IENLQR---HDNYEIHEKS 347 (383)
Q Consensus 273 ~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~l~~---~~~~~v~~~a 347 (383)
.+..|..-++ .+++.++..|+..|..++..++. .+...+....+++. |..+.. .+...|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~------------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH------------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH------------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 3455666665 47889999999999999987654 35555666667776 666653 3456899999
Q ss_pred HHHHHHhcCCCC
Q 037142 348 AKILETYWCGRV 359 (383)
Q Consensus 348 ~~~l~~~~~~~~ 359 (383)
..++..+...-.
T Consensus 122 l~li~~W~~~f~ 133 (157)
T 1elk_A 122 LNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999988766543
No 158
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.88 E-value=2.7 Score=33.78 Aligned_cols=74 Identities=8% Similarity=-0.004 Sum_probs=57.4
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhch
Q 037142 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~ 304 (383)
+..|..-+.+.++.++..|..+|-.+..+++......+.+..++..|..+++. .++.|+..++..+..-.....
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 44566667788999999999999999888877777777677777778777753 567899999988887776543
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=74.46 E-value=18 Score=29.47 Aligned_cols=133 Identities=11% Similarity=-0.006 Sum_probs=78.5
Q ss_pred hHHHHHHHHhhhhcCCCccccceecCCChHHHH-HhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142 160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLL-GLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~-~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 238 (383)
.+.+++..++.++.+.+.. +.+..++ ..+... .+..+.-+++++.|+..+..-..+.+..+.....+...+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~-~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC-chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 3667888888887665531 2333333 333444 778999999999999876642344443332333444433
Q ss_pred h--------cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC---------CCCHHHHHHHHHHHHHHHH
Q 037142 239 Q--------NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL---------CPDPQIVTVCLKALENILK 301 (383)
Q Consensus 239 ~--------~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---------~~~~~v~~~al~~l~~l~~ 301 (383)
. ..+..++..++.++.|++.... . .. .+......+.+.+. ..+++....++-++.+++.
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~-~--~~-~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVT-K--GN-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH-T--SC-SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHh-h--cc-chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1 1366788888888888875310 0 00 00112233444333 1377899999999999997
Q ss_pred hch
Q 037142 302 VGE 304 (383)
Q Consensus 302 ~~~ 304 (383)
.++
T Consensus 218 ~~~ 220 (253)
T 3gae_A 218 VEP 220 (253)
T ss_dssp HSG
T ss_pred CcH
Confidence 544
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.05 E-value=8.8 Score=28.70 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=54.5
Q ss_pred hHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 037142 231 IGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP-LCDLLLC---PDPQIVTVCLKALENILKV 302 (383)
Q Consensus 231 l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~~l~~l~~~ 302 (383)
+..|..-+. +.++.++..|...|-.+..+++......+.+..++.. |+.++.. .+..|+..++..+..-...
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 445666676 4788999999999999999988777777777778887 7787742 3458888888888776654
No 161
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=71.44 E-value=5 Score=28.93 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=61.0
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccC
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNT 309 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~ 309 (383)
++|.|...+++.+..+...++..|...- .. +++.+.+.+.++|..=+. |.+..+....+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWKY---WVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH---
Confidence 4678888999999888888777776532 11 455566666677765444 4444444332211
Q ss_pred cCCCCcccHHHHHHHHhccHHHHHHHhcCC-----CHHHHHHHHHHHHHhcCCC
Q 037142 310 DTDIGDVNQYAQLVEEAKGLEKIENLQRHD-----NYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-----~~~v~~~a~~~l~~~~~~~ 358 (383)
... ...+.|.++..++ .+++...|.++|.+||+++
T Consensus 93 ---------~~~-----~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~~ 132 (134)
T 3ut4_A 93 ---------NKQ-----LVKSELERLSSLEIINEDIREIVNLSKDYLHFYYPDK 132 (134)
T ss_dssp ---------HHH-----HHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC---
T ss_pred ---------HHH-----HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcccc
Confidence 122 2346778887775 4579999999999998753
No 162
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=70.73 E-value=12 Score=32.69 Aligned_cols=190 Identities=13% Similarity=0.064 Sum_probs=93.5
Q ss_pred HHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhcc
Q 037142 52 RDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCD 130 (383)
Q Consensus 52 ~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~ 130 (383)
.+..++...+..|+.++ +++|+.-|...-.+|..+-..-.......-..+-..+.+++... ...-...++..++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 33444455677788888 78899888888888877765432222222233444455555532 22223344555555555
Q ss_pred CCC---chHHHHHHHhCcHHHHHHhcCCCChhh-HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHH
Q 037142 131 GGK---NDEIQAVIEAGVCPRLVKLLGHPSQSV-LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNY 206 (383)
Q Consensus 131 ~~~---~~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~ 206 (383)
+.. .+....+ +...++.+.+.+.-.. -.....++..++..++.... .++..++..--.+ +..=...
T Consensus 246 gfa~PLKeehk~F----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~-----~vi~~LLk~WP~t-ns~Kevl 315 (392)
T 2jak_A 246 GFALPLKEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----PVVMALLKYWPKT-HSPKEVM 315 (392)
T ss_dssp TCCSSCCHHHHHH----HHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHSSCSS-CCTTHHH
T ss_pred ccCCCCcHHHHHH----HHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHH-----HHHHHHHHhCCCC-CchHHHH
Confidence 422 1222222 2344555555543222 22344555555555553322 2233333333222 2211222
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142 207 ACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253 (383)
Q Consensus 207 a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 253 (383)
-+.-+..+.. ..+...+.+. ..++..+..++.+++.+|.+.|....
T Consensus 316 FL~eleeiLe~~~~~~f~~i~-~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 316 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 2233333332 2233333322 33667788888888888888875443
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.09 E-value=6 Score=31.60 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=52.9
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC 88 (383)
Q Consensus 18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~ 88 (383)
++..+.+-|.+.++.++..|+..|..+.... +.+...+....++..|..++.+..+..++..++..+..-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4566777788899999999999999888654 3455666666677788888865567788887776665554
No 164
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=67.47 E-value=14 Score=30.09 Aligned_cols=105 Identities=8% Similarity=-0.017 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-------CChhHHHHHHHHHHhhcCCC-CCC-Chh
Q 037142 27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-------ENLSMKRIATWTLSNLCGGK-PRP-IFD 97 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-------~~~~~~~~a~~~L~~l~~~~-~~~-~~~ 97 (383)
.+.++..+..+++++.|+-......+..+........+++.+... ++..++..+...+.|++... ..+ ...
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e 179 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 179 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTT
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHH
Confidence 345778999999999999876543455554332344455544221 25567778888889988643 111 111
Q ss_pred hhhchhHHHHHhhc-----cCCHHHHHHHHHHHHHhccC
Q 037142 98 QVRPCLPTLAQLVH-----SNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 98 ~~~~~i~~l~~ll~-----~~~~~~~~~~~~~l~~l~~~ 131 (383)
....++..+...+. ..|.+....++.+++++...
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 22223333332211 23788999999999988854
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=63.20 E-value=20 Score=31.67 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=65.1
Q ss_pred hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-------CChhHHHHHHHHHHhhcCCCC--CCCh
Q 037142 26 LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-------ENLSMKRIATWTLSNLCGGKP--RPIF 96 (383)
Q Consensus 26 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-------~~~~~~~~a~~~L~~l~~~~~--~~~~ 96 (383)
+.+..+..+..+++++.|+-......+..+........+++.+... .+..++..+..++.|++.... ...
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~- 349 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 349 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC-
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-
Confidence 3356788999999999999876532344443222345566655211 245677788888899886431 111
Q ss_pred hhhhchhHHHHHhhc---------cCCHHHHHHHHHHHHHhccC
Q 037142 97 DQVRPCLPTLAQLVH---------SNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 97 ~~~~~~i~~l~~ll~---------~~~~~~~~~~~~~l~~l~~~ 131 (383)
......+..++. ..|.+....++.+|++|...
T Consensus 350 ---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 350 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp ---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 223344555444 35889999999999999954
No 166
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=60.21 E-value=26 Score=25.68 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=55.0
Q ss_pred hHHHHHHHhCCChHHHHHhhCC------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC--ChhHHH
Q 037142 7 LEDKKAVVDHGAVPIFVKLLAS------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE--NLSMKR 78 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~--~~~~~~ 78 (383)
.+.+..+++.|++..+-.-|.. ++..||...+.+|.++-- .++.+.+.| +...+.++..++ .++.++
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~Sg-lGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSG-VGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHC-HHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCC-CCcchhhhhcCCccCHHHHH
Confidence 4567889999999999888864 567899999999998742 355666666 666667775444 556777
Q ss_pred HHHHHHHhh
Q 037142 79 IATWTLSNL 87 (383)
Q Consensus 79 ~a~~~L~~l 87 (383)
.|-..+..-
T Consensus 126 la~~Li~~W 134 (145)
T 2xpp_A 126 SAKALVQKW 134 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665543
No 167
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=59.26 E-value=20 Score=30.98 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-------CChhHHHHHHHHHHhhcCCC--CCCChh
Q 037142 27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-------ENLSMKRIATWTLSNLCGGK--PRPIFD 97 (383)
Q Consensus 27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-------~~~~~~~~a~~~L~~l~~~~--~~~~~~ 97 (383)
.+..+..+..+++++.|+-......+..+........+++.+... .+..++..+..++.|++... ....
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~-- 286 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD-- 286 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC--
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch--
Confidence 356788999999999999876532344332211233455554211 24567778888889988643 1111
Q ss_pred hhhchhHHHHHhhc---------cCCHHHHHHHHHHHHHhccC
Q 037142 98 QVRPCLPTLAQLVH---------SNDEHVMSNACWGLSLLCDG 131 (383)
Q Consensus 98 ~~~~~i~~l~~ll~---------~~~~~~~~~~~~~l~~l~~~ 131 (383)
......+..++. ..|.+....++.++++|...
T Consensus 287 --~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 --LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp --TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 223344555554 35889999999999999954
No 168
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=59.16 E-value=25 Score=26.03 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=52.8
Q ss_pred ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH-HHHHhcC---CCHHHHHHH
Q 037142 273 CIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK-IENLQRH---DNYEIHEKS 347 (383)
Q Consensus 273 ~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~l~~~---~~~~v~~~a 347 (383)
.+..|..-+.. .++.++..|+..|..++..++.. +...+....++.. |..+... ...+|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 34555555553 57788888999999999877643 4444544455543 5555543 345799999
Q ss_pred HHHHHHhcCCCCCCC
Q 037142 348 AKILETYWCGRVVGP 362 (383)
Q Consensus 348 ~~~l~~~~~~~~~~~ 362 (383)
..++..+...-..+|
T Consensus 122 l~li~~Wa~~F~~~p 136 (152)
T 3rru_A 122 LNFIKTWSQGFPGGV 136 (152)
T ss_dssp HHHHHHHHTCCSSSC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999887766554
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=57.12 E-value=65 Score=27.83 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=77.8
Q ss_pred HHHHHHHHhhhhcCCCccccceecCCChHHHH-HhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh-
Q 037142 161 LTQALHTVGNIARGDYSQTLYIINCGALPYLL-GLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL- 238 (383)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~-~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll- 238 (383)
+.+++..++.++.+.+.. +.+..++ ..+... .+..+.-+++++.|+..+..-..+.+........+...+
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~-~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCC-ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHH
Confidence 777899998888665521 2233333 334444 788999999999999876532333332221223333333
Q ss_pred -------hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC---------CCCHHHHHHHHHHHHHHHHh
Q 037142 239 -------QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL---------CPDPQIVTVCLKALENILKV 302 (383)
Q Consensus 239 -------~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---------~~~~~v~~~al~~l~~l~~~ 302 (383)
...+..++..++..+.|++... .+.-.+......+.+++. ..+++....++-|+.+++..
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~----~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALV----TKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHH----HHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHH----hcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1235678888888888887531 000000122334555544 25889999999999999964
Q ss_pred c
Q 037142 303 G 303 (383)
Q Consensus 303 ~ 303 (383)
.
T Consensus 328 ~ 328 (362)
T 3l3f_X 328 E 328 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=54.97 E-value=88 Score=27.67 Aligned_cols=136 Identities=9% Similarity=-0.042 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-
Q 037142 77 KRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH- 155 (383)
Q Consensus 77 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~- 155 (383)
+-.++.++.-+..+.+... .+...+...+.+..+..+..++++++|+... ..-....+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~-----~l~~li~~~l~~~~~an~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS-----DIKDYIEEGLGNKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHhcCC-cchHHHHhhCchhHHHHHHHHHHH
Confidence 4456777777666653221 1222333334455788999999999999977 32123333221223455554421
Q ss_pred -------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc---------cccchhHHHHHHHHHHHHhcCCH
Q 037142 156 -------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI---------DNHKTSIKNYACWIISNITAGNR 219 (383)
Q Consensus 156 -------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~---------~~~~~~~~~~a~~~l~nl~~~~~ 219 (383)
.+..++.++...+.|++...-... .+...+..+..++. .. +++....++.++++++...+
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~-d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQE-CEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHT-SHHHHHHHHHHHHHHHHHCH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 356788888888888884321100 01234556666665 23 77888999999999987554
Q ss_pred HHH
Q 037142 220 EQI 222 (383)
Q Consensus 220 ~~~ 222 (383)
..+
T Consensus 393 ~~~ 395 (425)
T 3pst_A 393 TLR 395 (425)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 171
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=54.05 E-value=49 Score=24.07 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=46.6
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhcCCCC--------HHHHHHHHHHHHHHH
Q 037142 230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE-GCIKPLCDLLLCPD--------PQIVTVCLKALENIL 300 (383)
Q Consensus 230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~--------~~v~~~al~~l~~l~ 300 (383)
+++.|..-|.+.++.++..|..+|-.|+.++++.....+.+. ..|..+.++--.++ ..|+..|-.++.-|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 455777778888889999999999999999888887776663 22333333221222 246666666554443
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=52.92 E-value=25 Score=26.01 Aligned_cols=74 Identities=11% Similarity=-0.046 Sum_probs=52.2
Q ss_pred hHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH-HHhhcCCC---CHHHHHHHHHHHHHHHHhch
Q 037142 231 IGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP-LCDLLLCP---DPQIVTVCLKALENILKVGE 304 (383)
Q Consensus 231 l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~~---~~~v~~~al~~l~~l~~~~~ 304 (383)
+..|..-+.+ .++.+...|...|-.+..+++......+.+..++.- |+.++..+ +..|+..++..+..-.....
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445555553 577777888888999988888777777766666653 67776532 34799999998888776543
No 173
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=49.82 E-value=51 Score=25.59 Aligned_cols=130 Identities=14% Similarity=0.114 Sum_probs=76.3
Q ss_pred hchhHHHHHhhc------cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHhh
Q 037142 100 RPCLPTLAQLVH------SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---PSQSVLTQALHTVGN 170 (383)
Q Consensus 100 ~~~i~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---~~~~v~~~a~~~L~~ 170 (383)
...+|.+++++. ..|.............+..+ +.-..+.... .++|.++.++-. ....++..|...+..
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N-~~l~lepYlH-~LipsvLtCll~k~l~~~~LRd~AA~lL~~ 116 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKN-KHVFIDPYLH-QILPSLLTCVIGKSIVDDDVRKMSADIVKY 116 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC-TTCCCGGGHH-HHHHHHHHHHHCTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcC-CCCChHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 446777776664 24678888888888888887 4433332222 267777776632 233799999999999
Q ss_pred hhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142 171 IARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239 (383)
Q Consensus 171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 239 (383)
++....+... -++..++..+.+.+.++. +.....-|+..|..+. ++..+.+ ++|.+-.+.+
T Consensus 117 I~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG---~~~vr~~----llP~l~~~~~ 178 (196)
T 4atg_A 117 IYDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS---KNVVNTV----IREHAEEYKR 178 (196)
T ss_dssp HHHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---HHHHHTH----HHHHHHHHHH
T ss_pred HHHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH---HHHHHHh----hhcCHHHHHH
Confidence 9965443222 223456666777665541 3344445555555553 2333332 4455555554
No 174
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=47.90 E-value=66 Score=24.26 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=58.1
Q ss_pred hHHHHHHHhCCChHHHHHhhCC------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC--ChhHHH
Q 037142 7 LEDKKAVVDHGAVPIFVKLLAS------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE--NLSMKR 78 (383)
Q Consensus 7 ~~~~~~~~~~g~i~~L~~lL~~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~--~~~~~~ 78 (383)
......+++.|++..+-.-|.. ++-.||...+.+|.++-- .++.+.+.| +...+.++..++ ..+.++
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI----~~e~Lk~Sg-lGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV----KTEHLKESG-LGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHS-HHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC----CHHHHhhCC-CCceeeehhcCCcccHHHHH
Confidence 4567789999999999888864 567999999999998752 345566566 666666765444 567788
Q ss_pred HHHHHHHhhcCC
Q 037142 79 IATWTLSNLCGG 90 (383)
Q Consensus 79 ~a~~~L~~l~~~ 90 (383)
.|-..+..-++.
T Consensus 141 la~~Li~~WsRp 152 (170)
T 3nfq_A 141 LAEKLIAEWTRP 152 (170)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 888888776653
No 175
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=43.48 E-value=1.2e+02 Score=23.89 Aligned_cols=71 Identities=10% Similarity=0.016 Sum_probs=46.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142 63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141 (383)
Q Consensus 63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 141 (383)
.+.... .+++.-+++.++-.+.... ........++.+..++.+++.-++..+.|+|..++.. .++....++
T Consensus 128 ~i~~W~-~s~~~w~rR~ai~~~l~~~------~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl 198 (220)
T 2b6c_A 128 IFALFY-GAENFWNRRVALNLQLMLK------EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM 198 (220)
T ss_dssp HHHHHT-TCSSHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 344555 6777888887766442111 1112234566666688889999999999999999987 555444443
No 176
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=40.82 E-value=1.3e+02 Score=23.63 Aligned_cols=140 Identities=8% Similarity=-0.021 Sum_probs=82.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccce
Q 037142 104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYI 182 (383)
Q Consensus 104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l 182 (383)
..+..+..++..+.+..++..+...... ..+. .++.+-.++.. ++..+....+.+++.+....+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~-~~~~--------~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQR-FSLE--------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGG-CCHH--------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhh-CCHH--------HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 4455566666777777777777665422 1111 12333344443 6667776666667777644332
Q ss_pred ecCCChHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC
Q 037142 183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT 261 (383)
Q Consensus 183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 261 (383)
...+.+.....++ +..+++.|+..+..... .+. .. .++.+..++.+++.-|++...|+|..+....
T Consensus 124 ---~~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~---~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~- 190 (220)
T 2b6c_A 124 ---ELPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQ---DL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN- 190 (220)
T ss_dssp ---GHHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCH---HH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC-
T ss_pred ---HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCH---HH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhC-
Confidence 1345677888888 88888888765422211 111 11 1333444566788999999999999999874
Q ss_pred HHHHHHHHH
Q 037142 262 HEQIKYLER 270 (383)
Q Consensus 262 ~~~~~~l~~ 270 (383)
++....++.
T Consensus 191 ~~~v~~fl~ 199 (220)
T 2b6c_A 191 PQWVEELMK 199 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444433333
No 177
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=39.14 E-value=1.1e+02 Score=22.33 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChHHHHHHhhc------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHH
Q 037142 220 EQIQAVIDAGLIGPLVNLLQN------AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTV 291 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 291 (383)
.....+++.|++..+-.++.. ++..+|.....+|.++-.. ...+.+.|+-..++.+-+++ .++.+..
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~-----~e~Lk~SglGkvv~~l~k~~~et~~nk~l 126 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH-----KEHLVTSGVGKIVYFYSINPKESKEVRAS 126 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC-----HHHHHHHCHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC-----HHHhhcCCCCcchhhhhcCCccCHHHHHH
Confidence 456777899999999999973 4789999999999998633 44455567666666666554 5677777
Q ss_pred HHHHHHHHH
Q 037142 292 CLKALENIL 300 (383)
Q Consensus 292 al~~l~~l~ 300 (383)
|-..+..-.
T Consensus 127 a~~Li~~Ws 135 (145)
T 2xpp_A 127 AKALVQKWT 135 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665544
No 178
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=35.42 E-value=1.5e+02 Score=22.88 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=69.1
Q ss_pred CChHHHHHHhc-----CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC---CHHHHHHHHHHHHHhcc
Q 037142 59 AALIPLLTQLN-----NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN---DEHVMSNACWGLSLLCD 130 (383)
Q Consensus 59 g~i~~L~~~L~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~ 130 (383)
..+|.+++++. +-.|.......+.....+..++.-.-......++|.++.++-.. ...+|..|+..+..+++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 35677776663 22366777778888888888765445555678888888887532 23799999999999997
Q ss_pred CCCchHHHHHHHhCcHHHHHHhcCCCC--hhhHHHHHHHHhhh
Q 037142 131 GGKNDEIQAVIEAGVCPRLVKLLGHPS--QSVLTQALHTVGNI 171 (383)
Q Consensus 131 ~~~~~~~~~~~~~~~i~~l~~~L~~~~--~~v~~~a~~~L~~l 171 (383)
. .......+ ...+...+.+.+.+++ .....=|+..|..+
T Consensus 120 ~-~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 120 T-YSRSYKTL-APRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp H-HTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred H-hCccCchH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 6 22222222 2235666676666643 33333344444444
No 179
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=34.52 E-value=2.1e+02 Score=24.17 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH-hhc--------cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCc
Q 037142 75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ-LVH--------SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGV 145 (383)
Q Consensus 75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~-ll~--------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 145 (383)
.+++..+..+.......+. ........+|.++. .+. -.++++..-....+..+... -.+.+..+.+. +
T Consensus 44 ~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~-i~~~vp~Il~~-V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH-ITAEIPQIFDA-V 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG-GGGGHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH-hhhhHHHHHHH-H
Confidence 4666777777776665422 23344667777764 222 12478877777777777766 56677777775 6
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHhhhhcCCCccccceec---CCChHHHHHhhccccchhHHHHHHHHHHHHhc---
Q 037142 146 CPRLVKLLGH---PSQSVLTQALHTVGNIARGDYSQTLYIIN---CGALPYLLGLLIDNHKTSIKNYACWIISNITA--- 216 (383)
Q Consensus 146 i~~l~~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--- 216 (383)
++.-+.++.. +-|+.|..-...|..+..+.-...-.+-. ..+++.++..++++ ..++...++.++..+..
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~-~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT-MRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHHh
Confidence 7777888875 67899998888888887554322111111 13566777778888 88888888877755432
Q ss_pred CCHHHHHHHHhcCChHHHHHHh
Q 037142 217 GNREQIQAVIDAGLIGPLVNLL 238 (383)
Q Consensus 217 ~~~~~~~~~~~~~~l~~L~~ll 238 (383)
..++..+.+.+.-.++.+.+++
T Consensus 200 ~~~~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 200 QEEAAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 1345555555544444444443
No 180
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=31.04 E-value=2e+02 Score=28.04 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=72.7
Q ss_pred ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC--CCChhHHHHHHHH
Q 037142 6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN--HENLSMKRIATWT 83 (383)
Q Consensus 6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~~~~~~a~~~ 83 (383)
+++.+..+++. +.|....-+.+.+..+...+..+|.+++.-.|.+++.++ .++++.+-.-|.. -..+.-...++.+
T Consensus 329 t~~~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 329 TSFCHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHH
Confidence 34555566532 455556667788999999999999999986664445543 2334445555522 1344444455666
Q ss_pred HHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc
Q 037142 84 LSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD 130 (383)
Q Consensus 84 L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~ 130 (383)
+..++..-... -......++..++.-++.+|+.--..++.++..++.
T Consensus 407 l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 407 FTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 66555322111 112223455555555567788777777777777654
No 181
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=30.64 E-value=1.7e+02 Score=21.99 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChHHHHHHhhc------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHH
Q 037142 220 EQIQAVIDAGLIGPLVNLLQN------AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTV 291 (383)
Q Consensus 220 ~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 291 (383)
.....+++.|++..+-.+|.. ++..+|.....+|.++-.. ...+.++|+=..++.+.+++ .++.+..
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~-----~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK-----TEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC-----HHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCC-----HHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 556677899999999999974 4789999999999998633 34455666666666655544 5677777
Q ss_pred HHHHHHHHHH
Q 037142 292 CLKALENILK 301 (383)
Q Consensus 292 al~~l~~l~~ 301 (383)
|-..+..-..
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 182
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=27.30 E-value=95 Score=24.70 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=53.0
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142 145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA 224 (383)
Q Consensus 145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~ 224 (383)
..+.+.....+++.-++..++..+... ....... ..++.+...+.++ +.-++....|+|..+...+++....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~--~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKY--KQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTC--GGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHH--HhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 456778888899988888887654222 1111100 2344455666677 8999999999999999998888777
Q ss_pred HHhcC
Q 037142 225 VIDAG 229 (383)
Q Consensus 225 ~~~~~ 229 (383)
+++..
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77543
No 183
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=26.69 E-value=2.4e+02 Score=22.32 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=83.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHH-HHHhhhhcCCCccccc
Q 037142 104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQAL-HTVGNIARGDYSQTLY 181 (383)
Q Consensus 104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~-~~L~~l~~~~~~~~~~ 181 (383)
..+..+..++..+.+..++..+.........+ .++.+-.++.. ++..+....+ .+++.+....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 45566666777778877777776443220121 12333333333 5666654442 455555544332
Q ss_pred eecCCChHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG 260 (383)
Q Consensus 182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 260 (383)
...+.+...+.++ +..+++.|+..+..... .+.. ..++.+...+.+++.-|++...|+|..+...
T Consensus 131 ----~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~- 196 (232)
T 3jxy_A 131 ----LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKT- 196 (232)
T ss_dssp ----GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-
T ss_pred ----HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-
Confidence 1345677888888 88898888765422211 1111 1233455667788999999999999999987
Q ss_pred CHHHHHHHHHc
Q 037142 261 THEQIKYLERE 271 (383)
Q Consensus 261 ~~~~~~~l~~~ 271 (383)
+++....+++.
T Consensus 197 ~p~~v~~fl~~ 207 (232)
T 3jxy_A 197 NPDVVWEYVQN 207 (232)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45555555553
No 184
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=24.35 E-value=88 Score=21.29 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=32.7
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCC
Q 037142 320 AQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETYWCGR 358 (383)
Q Consensus 320 ~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~ 358 (383)
.++|++.+.-..+..|..| ++++|...|..++..+-..-
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v 86 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLL 86 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 5678899988999999886 99999999999998765543
No 185
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.90 E-value=89 Score=22.16 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175 (383)
Q Consensus 102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~ 175 (383)
.+...++-++.....++....|++.+.-.. .. ++..+.+.+....++-+...+..+-.++.+.
T Consensus 9 ~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a------~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 9 SLDRKFQSVTNTMESIQGLSSWCIENKKHH------ST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHTGGGH------HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHhHHHH------HH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 344444555566678888888888764422 22 3444455555556666667777776666543
Done!