BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037144
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 275/502 (54%), Gaps = 45/502 (8%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQE 65
A EFRR+G VD++A Y + I+ V VEPGYL+ +P +AP P++ E I+ DV++
Sbjct: 3 ASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEK 62
Query: 66 HIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWL 125
I+PG+THW SP +FAYFP SS ++ +ML +G W +SPA ELE ++MDWL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 126 GQMLDLPKSFLF--SGNGGGVIQGXXXXXXXXXXXXXRDRVLKKIGREN--------ISK 175
G+ML+LPK+FL +G GGGVIQG R +V+ ++ + + K
Sbjct: 123 GKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEK 182
Query: 176 LVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPL 235
LV YSSDQ H + ++A I G+ K I ++ + A ++ + D A LIP
Sbjct: 183 LVAYSSDQAHSSVERAGLIGGVKLKAI-----PSDGNFAMRASALQEALERDKAAGLIPF 237
Query: 236 FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSF 295
F+ AT+GTT + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE DSF
Sbjct: 238 FMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSF 297
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC 355
+FNPHKWL DC +WVK + L +P YLK+ D Y+ WQI L
Sbjct: 298 NFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDS---GLITDYRHWQIPLG 354
Query: 356 RRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVT 415
RRFRSLK+W V R +GV L+ +IR HV ++ FE LV D RFE+ LVCFR+
Sbjct: 355 RRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLK 414
Query: 416 PSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLR 475
S N+ N LL+ IN + K+ + + +VLR
Sbjct: 415 GS---------------------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLR 447
Query: 476 FAAGNSMTMESHVRAAWTVVQE 497
FA + +HV+ AW ++E
Sbjct: 448 FAICSRTVESAHVQRAWEHIKE 469
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/502 (39%), Positives = 274/502 (54%), Gaps = 45/502 (8%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQE 65
A EFRR+G VD++A Y + I+ V VEPGYL+ +P +AP P++ E I+ DV++
Sbjct: 3 ASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEK 62
Query: 66 HIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWL 125
I+PG+THW SP +FAYFP SS ++ +ML +G W +SPA ELE ++MDWL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 126 GQMLDLPKSFLF--SGNGGGVIQGXXXXXXXXXXXXXRDRVLKKIGREN--------ISK 175
G+ML+LPK+FL +G GGGVIQG R +V+ ++ + + K
Sbjct: 123 GKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEK 182
Query: 176 LVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPL 235
LV YSSDQ H + ++A I G+ K I ++ + A ++ + D A LIP
Sbjct: 183 LVAYSSDQAHSSVERAGLIGGVKLKAI-----PSDGNFAMRASALQEALERDKAAGLIPF 237
Query: 236 FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSF 295
F+ AT+GTT + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE DSF
Sbjct: 238 FMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSF 297
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC 355
+FNPH WL DC +WVK + L +P YLK+ D Y+ WQI L
Sbjct: 298 NFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDS---GLITDYRHWQIPLG 354
Query: 356 RRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVT 415
RRFRSLK+W V R +GV L+ +IR HV ++ FE LV D RFE+ LVCFR+
Sbjct: 355 RRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLK 414
Query: 416 PSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLR 475
S N+ N LL+ IN + K+ + + +VLR
Sbjct: 415 GS---------------------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLR 447
Query: 476 FAAGNSMTMESHVRAAWTVVQE 497
FA + +HV+ AW ++E
Sbjct: 448 FAICSRTVESAHVQRAWEHIKE 469
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/501 (38%), Positives = 274/501 (54%), Gaps = 45/501 (8%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQE 65
A +FRR+G VD+MA+Y + I+ V V+PGYL+ +P +AP P++ E ILQDV++
Sbjct: 3 ASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEK 62
Query: 66 HIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWL 125
I+PG+THW SP +FAYFP SS ++ +ML +G W +SPA ELE ++MDWL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 126 GQMLDLPKSFL--FSGNGGGVIQGXXXXXXXXXXXXXRDRVLKKIGREN--------ISK 175
G+ML LP++FL +G GGGVIQG R +V++++ + + K
Sbjct: 123 GKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEK 182
Query: 176 LVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPL 235
LV Y+SDQ H + ++A I G+ K I + + A ++ + D A LIP
Sbjct: 183 LVAYASDQAHSSVERAGLIGGVKLKAI-----PSDGKFAMRASALQEALERDKAAGLIPF 237
Query: 236 FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSF 295
F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE DSF
Sbjct: 238 FVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSF 297
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC 355
+FNPHKWL DC +WVK + L +P YLK+ + Y+ WQ+ L
Sbjct: 298 NFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKH---SHQGSGLITDYRHWQLPLG 354
Query: 356 RRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVT 415
RRFRSLK+W V R +GV L+ +IR HV ++ FE V D RFEV LVCFR+
Sbjct: 355 RRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLK 414
Query: 416 PSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLR 475
S + N LLE IN + K+ + + G +VLR
Sbjct: 415 GS---------------------------DGLNEALLERINSARKIHLVPCRLRGQFVLR 447
Query: 476 FAAGNSMTMESHVRAAWTVVQ 496
FA + HVR AW ++
Sbjct: 448 FAICSRKVESGHVRLAWEHIR 468
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 357 bits (916), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 192/500 (38%), Positives = 270/500 (54%), Gaps = 48/500 (9%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQE 65
A EF+ VDF+AEY +NI + V +V+PGYLK +P++AP PE + ++QD++
Sbjct: 3 APEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIER 62
Query: 66 HIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWL 125
I+PG+THW SP + AYFP +S IV +MLS +G WI+SPA ELE ++MDWL
Sbjct: 63 VIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWL 122
Query: 126 GQMLDLPKSFLFSG--NGGGVIQGXXXXXXXXXXXXXRDRVLKKIGREN--------ISK 175
G+ML+LP FL GGGVIQG + + LK++ + + K
Sbjct: 123 GKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGK 182
Query: 176 LVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPL 235
LV Y SDQ H + ++A + G+ +R++++ G + E + Q DV LIP
Sbjct: 183 LVGYCSDQAHSSVERAGLLGGV---KLRSVQSENHRMRGAALEKAIEQ---DVAEGLIPF 236
Query: 236 FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSF 295
+ T+GTT A D L V + +W+HVDAAYAGSA ICPE+RH + G+E DSF
Sbjct: 237 YAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSF 296
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC 355
+FNPH W+ DC +W+KDPS +++ + +P YLK++ P Y+ WQI L
Sbjct: 297 NFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPD-----YRHWQIPLG 351
Query: 356 RRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVT 415
RRFR+LKLW V+R +GV NL+ IR H AK F L +D RFE+A N LVCFR+
Sbjct: 352 RRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLK 411
Query: 416 PSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLR 475
S NE N LL+ IN G + + A + +Y LR
Sbjct: 412 GS---------------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLR 444
Query: 476 FAAGNSMTMESHVRAAWTVV 495
A + T + +W V
Sbjct: 445 MAICSRFTQSEDMEYSWKEV 464
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 184/506 (36%), Positives = 272/506 (53%), Gaps = 56/506 (11%)
Query: 7 QEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQEH 66
+E+R +G VD++ +Y + + V V+PGYL+ +LPESAP P+S ++I D++
Sbjct: 9 EEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERI 68
Query: 67 IVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWLG 126
I+PG+ HWQSP+ AY+PA +S ++G+ML+ N +G W SSPA ELE VMDWL
Sbjct: 69 IMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLA 128
Query: 127 QMLDLPKSFLF---SGNGGGVIQGXXXXXXXXXXXXXR-DRVLKKIGRENI-------SK 175
+ML LP+ FL S GGGV+Q R +++L+ E ++
Sbjct: 129 KMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188
Query: 176 LVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPL 235
LV Y+SDQ H + +KA I + K + ++ L E++ I D + L+P+
Sbjct: 189 LVAYASDQAHSSVEKAGLISLVKMKFLPV-----DDNFSLRGEALQKAIEEDKQRGLVPV 243
Query: 236 FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSF 295
F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A +CPEFR F+ G+E DSF
Sbjct: 244 FVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSF 303
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNE----ATDQEPKEQEVGYKDWQ 351
+FNP KW+ DC WVKD L T S NP YL++ ATD + WQ
Sbjct: 304 TFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATD---------FMHWQ 354
Query: 352 ITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVC 411
I L RRFRS+KLW VIR+FGV NL+ +R MAK FE LV +D FE+ R+ LV
Sbjct: 355 IPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVV 414
Query: 412 FRVTPSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGI 471
FR+ + N +L+ I +G++F+ A +
Sbjct: 415 FRL---------------------------KGPNSLTENVLKEIAKAGRLFLIPATIQDK 447
Query: 472 YVLRFAAGNSMTMESHVRAAWTVVQE 497
++RF + T + W ++++
Sbjct: 448 LIIRFTVTSQFTTRDDILRDWNLIRD 473
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 170/383 (44%), Gaps = 38/383 (9%)
Query: 53 PESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSP 112
PES+E IL D ++ + G+ P +F + G+ GE L+S N + +P
Sbjct: 73 PESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 131
Query: 113 AAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGXXXXXXXXXXXXXRDRVLKKI---G 169
V +E I + + +++ S +G G+ R + ++ G
Sbjct: 132 VFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG 186
Query: 170 RENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVE 229
+ KLV+++S+Q+H + +KA +G N+ IK + I D E
Sbjct: 187 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKI----------IPADFE 236
Query: 230 AEL--------IPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE 281
A++ +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + +
Sbjct: 237 AKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRK 296
Query: 282 FRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPK 341
RH ++G+E +S ++NPH + L C + VK+ L + YL Q+ K
Sbjct: 297 HRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLF-----QQDK 351
Query: 342 EQEVGYK--DWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRF 399
+V Y D I R K W++ + G N I + +A+ + + + F
Sbjct: 352 HYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 411
Query: 400 EVAF---PRNFSLVCFRVTPSAV 419
E+ F P + + VCF P ++
Sbjct: 412 EMVFNGEPEHTN-VCFWYIPQSL 433
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 38/383 (9%)
Query: 53 PESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSP 112
PES+E IL D ++ + G+ P +F + G+ GE L+S N + +P
Sbjct: 70 PESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 128
Query: 113 AAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGXXXXXXXXXXXXXRDRVLKKI---G 169
V +E I + + +++ S +G G+ R + ++ G
Sbjct: 129 VFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG 183
Query: 170 RENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVE 229
+ KLV+++S+Q+H + +KA +G N+ IK + I D E
Sbjct: 184 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKI----------IPADFE 233
Query: 230 AEL--------IPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE 281
A++ +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + +
Sbjct: 234 AKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRK 293
Query: 282 FRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPK 341
RH ++G+E +S ++NPH + L C + VK+ L YL Q K
Sbjct: 294 HRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLF-----QPDK 348
Query: 342 EQEVGYK--DWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRF 399
+ +V Y D I R K W++ + G N I + +A+ + + + F
Sbjct: 349 QYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 408
Query: 400 EVAF---PRNFSLVCFRVTPSAV 419
E+ F P + + VCF P ++
Sbjct: 409 EMVFNGEPEHTN-VCFWYIPQSL 430
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 169/393 (43%), Gaps = 23/393 (5%)
Query: 37 EPGYLKKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEM 96
EP LK+ L ES + IL+ + I + P +F + + G +
Sbjct: 70 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGH-PRFFNQLFSGLDPHALAGRI 128
Query: 97 LSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNG----GGVIQGXXXXX 152
++ N + +P V +E V+ L ++ SG+G GG I
Sbjct: 129 ITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS-----SGDGIFCPGGSISNMYAVN 183
Query: 153 XXXXXXXXRDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSS 212
R K+ G + L +++S + H + QK A +G+ ++R +K +
Sbjct: 184 LARYQ---RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGK 240
Query: 213 YGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 272
+ E + QI + +P + AT GTT + A DPL+ + DV ++ G+W+HVDAA+
Sbjct: 241 --MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAW 298
Query: 273 AGSACICPEFRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTL-STNPQYL 331
GS + RH +DG++ DS ++NPHK L L C L ++D S LL + YL
Sbjct: 299 GGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYL 358
Query: 332 KNEATDQEPKEQEVGYK--DWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLF 389
Q+ K +V D + RR LKLW++ + G L I +A+
Sbjct: 359 F-----QQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYL 413
Query: 390 ERLVTSDKRFEVAFPRNFSLVCFRVTPSAVMDK 422
+ + FE+ F VCF P ++ K
Sbjct: 414 VEEMKKREGFELVMEPEFVNVCFWFVPPSLRGK 446
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 169/376 (44%), Gaps = 24/376 (6%)
Query: 53 PESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSP 112
P+++E IL Q + I P YF + G+ + L+S N + +P
Sbjct: 66 PQNLEEILMHCQTTLKYAIKTGH-PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAP 124
Query: 113 AAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGXXXXXXXXXXXXXRDRV---LKKIG 169
V LE + + + +++ P G+G G+ R ++ +K+ G
Sbjct: 125 VFVLLEYVTLKKMREIIGWP-----GGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEKG 179
Query: 170 RENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVE 229
+ +L+ ++S+ +H + +K A +GI ++ IK + G S L + L+ +
Sbjct: 180 MAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDER---GKMIPSDLERRILEAK 236
Query: 230 AE-LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDG 288
+ +P + AT GTT A DPL + D+ K++ IW+HVDAA+ G + + + + G
Sbjct: 237 QKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSG 296
Query: 289 VECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYK 348
VE +S ++NPH + L C L V++ + + + YL Q+ K ++ Y
Sbjct: 297 VERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLF-----QQDKHYDLSYD 351
Query: 349 --DWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAF--- 403
D + R KLW++ R G + + +A+ ++ + + +E+ F
Sbjct: 352 TGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGK 411
Query: 404 PRNFSLVCFRVTPSAV 419
P++ + VCF P ++
Sbjct: 412 PQHTN-VCFWYIPPSL 426
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 159/374 (42%), Gaps = 16/374 (4%)
Query: 56 VETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAV 115
+++++ DV E + Q P+ A+ + E + N W + +A
Sbjct: 80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSAT 139
Query: 116 ELENIVMDWLGQMLDLPKSF--LFSGNGGGVIQGXXXXXXXXXXXXXRDRVLKKIGRENI 173
+E V++WL DL + +F+ G Q ++K+G +
Sbjct: 140 YVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDY 199
Query: 174 S-KLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAE- 231
+ KL + S ++H QK+A G+ K A+ T +++ G + L ++ +AE
Sbjct: 200 ADKLRIVCSKKSHFTVQKSASWXGLGEK---AVXTVDANADGTXDITKLDEVIAQAKAEG 256
Query: 232 LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEC 291
LIP + T GTT A+D L + D A + W HVD AY G A I + + GVE
Sbjct: 257 LIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVER 315
Query: 292 VDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQ 351
S S + HK + T+ C L V D S L + YL N D+ P D
Sbjct: 316 AHSISVDFHKLFYQTISCGALLVNDKSN-FKFLLHHADYL-NREHDELPN-----LVDKS 368
Query: 352 ITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVC 411
I +RF +LK++ +N G L + + + ++ +FE+ + S V
Sbjct: 369 IATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFELLAEPSLSTVL 428
Query: 412 FRVT-PSAVMDKLR 424
FR T +A +D+L
Sbjct: 429 FRATHETADLDELN 442
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 237 LCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE------ 290
+ GTT + +D ++ L +AK+ I++HVDAA+ G + ++ GV
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS 234
Query: 291 -CVDSFSFNPHK 301
VDS + +PHK
Sbjct: 235 LGVDSITIDPHK 246
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 184 THCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGT 243
H AF KAAQ GI + ++T + Y ++ I + + + +
Sbjct: 201 AHAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPG 249
Query: 244 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAG--------SACICPEFRHFIDGVECVDSF 295
VDP+ + +A + GI HVDA G P F ++GV V
Sbjct: 250 XPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSV--- 306
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCL 320
S + HK+ + + + P L
Sbjct: 307 SADTHKYGYGAKGTSVILYRRPDLL 331
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 184 THCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGT 243
H AF KAAQ GI + ++T + Y ++ I + + + +
Sbjct: 205 AHAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPG 253
Query: 244 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAG--------SACICPEFRHFIDGVECVDSF 295
VDP+ + +A + GI HVDA G P F ++GV V
Sbjct: 254 YPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSV--- 310
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCL 320
S + HK+ + + + P L
Sbjct: 311 SADTHKYGYGAKGTSVILYRRPDLL 335
>pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic
Aspartate Aminotransferase
pdb|1AAT|B Chain B, Oxoglutarate-Induced Conformational Changes In Cytosolic
Aspartate Aminotransferase
Length = 411
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 200 KNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVA 259
K+IR + ++ GL + +LS + E + L CA T D K + V
Sbjct: 152 KDIRTYRYWDAAKRGLDLQGLLSDMEKAPEFSIFILHACAHNPTGTDPTPDEWKQIAAVM 211
Query: 260 KQFGIWVHVDAAYAGSACICPE-----FRHFI-DGVE--CVDSFSFN 298
K+ ++ D+AY G A E R+F+ +G E C SFS N
Sbjct: 212 KRRCLFPFFDSAYQGFASGNLEKDAWAVRYFVSEGFELFCAQSFSKN 258
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 184 THCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGT 243
H AF KAAQ GI + ++T + Y ++ I + + + +
Sbjct: 205 AHAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPG 253
Query: 244 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAG--------SACICPEFRHFIDGVECVDSF 295
VDP+ + +A + GI HVDA G P F ++GV V
Sbjct: 254 YPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSV--- 310
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCL 320
S + H + + + + P L
Sbjct: 311 SADTHXYGYGAKGTSVILYRRPDLL 335
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 184 THCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGT 243
H AF KAAQ GI + ++T + Y ++ I + + + +
Sbjct: 201 AHAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPG 249
Query: 244 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAG--------SACICPEFRHFIDGVECVDSF 295
VDP+ + +A + GI HVDA G P F ++GV V
Sbjct: 250 YPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSV--- 306
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCL 320
S + H + + + + P L
Sbjct: 307 SADTHAYGYGAKGTSVILYRRPDLL 331
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 184 THCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGT 243
H AF KAAQ GI + ++T + Y ++ I + + + +
Sbjct: 201 AHAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPG 249
Query: 244 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAG--------SACICPEFRHFIDGVECVDSF 295
VDP+ + +A + GI HVDA G P F ++GV V
Sbjct: 250 YPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSV--- 306
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCL 320
S + H + + + + P L
Sbjct: 307 SADTHXYGYGAKGTSVILYRRPDLL 331
>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJS|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 200 KNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVA 259
K+IR+ + + GL + LS + E + L CA T + K + V
Sbjct: 153 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 212
Query: 260 KQFGIWVHVDAAYAGSACICPE-----FRHFI-DGVE--CVDSFSFN 298
K+ ++ D+AY G A E R+F+ +G E C SFS N
Sbjct: 213 KRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSXN 259
>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 200 KNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVA 259
K+IR+ + + GL + LS + E + L CA T + K + V
Sbjct: 153 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 212
Query: 260 KQFGIWVHVDAAYAGSACICPE-----FRHFI-DGVE--CVDSFSFN 298
K+ ++ D+AY G A E R+F+ +G E C SFS N
Sbjct: 213 KRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259
>pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic
Aspartate Aminotransferase At 1.9 Angstroms Resolution
pdb|2CST|B Chain B, Crystal Structure Of The Closed Form Of Chicken Cytosolic
Aspartate Aminotransferase At 1.9 Angstroms Resolution
Length = 411
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 200 KNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVA 259
K+IR + ++ GL + +L + E + L CA T D K + V
Sbjct: 152 KDIRTYRYWDAAKRGLDLQGLLDDMEKAPEFSIFILHACAHNPTGTDPTPDEWKQIAAVM 211
Query: 260 KQFGIWVHVDAAYAGSACICPE-----FRHFI-DGVE--CVDSFSFN 298
K+ ++ D+AY G A + R+F+ +G E C SFS N
Sbjct: 212 KRRCLFPFFDSAYQGFASGSLDKDAWAVRYFVSEGFELFCAQSFSKN 258
>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|B Chain B, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|C Chain C, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|D Chain D, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
Length = 422
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 200 KNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVA 259
K+IR+ + + GL + L+ + E ++ L CA T + K + V
Sbjct: 142 KDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVM 201
Query: 260 KQFGIWVHVDAAYAGSACICPE-----FRHFI-DGVE--CVDSFSFN 298
K ++ D+AY G A E R+F+ +G E C SFS N
Sbjct: 202 KHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKN 248
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 246 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 279
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 157 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 190
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 246 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 279
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 246 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 279
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 327 NPQYLKNEATDQEPKEQEV-------GYKDWQITLC 355
PQYL+N EP++++V G +DWQ++L
Sbjct: 389 KPQYLRNLCWTDEPRKRDVARFLSEQGARDWQVSLV 424
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 211 SSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDA 270
++ GL+ +L ++ E +I + CA T D + +CDV K+ VD
Sbjct: 164 ATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDM 223
Query: 271 AYAGSACICPEF-----RHFIDGVE---CVDSFSFN 298
AY G A ++ RH +D V SFS N
Sbjct: 224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSXN 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,291,464
Number of Sequences: 62578
Number of extensions: 571095
Number of successful extensions: 1375
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 36
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)