RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037144
(502 letters)
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 644 bits (1662), Expect = 0.0
Identities = 278/497 (55%), Positives = 361/497 (72%), Gaps = 26/497 (5%)
Query: 1 MDQAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETIL 60
MD A++ R GH VDF+A+YYK+I+ +PV SQV+PGYL++ LP+SAP PE+++ +L
Sbjct: 10 MD---AEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVL 66
Query: 61 QDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENI 120
DVQ I+PG+THWQSPNYFAY+P+ SSVAG +GEMLS+G N+VG WI+SPAA ELE I
Sbjct: 67 DDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 126
Query: 121 VMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGRENISKLVVYS 180
V+DWL ++L+LP+ FL +GNGGGVIQGT EA+L L AARDRVL+K+G+ + KLVVY+
Sbjct: 127 VLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYA 186
Query: 181 SDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCAT 240
SDQTH A QKA QI GI +N R +KT S++Y L+ E + I+ D+ + LIP FLCAT
Sbjct: 187 SDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCAT 246
Query: 241 VGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNPH 300
VGTT+ TAVDPL L +AK G+W HVDAAYAGSACICPE+RH+IDGVE DSF+ N H
Sbjct: 247 VGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAH 306
Query: 301 KWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRS 360
KW T DC LWVKD + L+ +LSTNP++LKN+A+ V YKDWQI L RRFRS
Sbjct: 307 KWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQ---ANSVVDYKDWQIPLGRRFRS 363
Query: 361 LKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSAVM 420
LKLW+V+R +GV NL+++IR+H+ +AK FE+LV D RFEV PR FSLVCFR+ P
Sbjct: 364 LKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK-- 421
Query: 421 DKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGN 480
+ E+ N+ N +LL+++N SGK+F++H ++ G YVLRFA G
Sbjct: 422 ------------------NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGA 463
Query: 481 SMTMESHVRAAWTVVQE 497
+T E HV AAW V+Q+
Sbjct: 464 PLTEERHVTAAWKVLQD 480
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 570 bits (1471), Expect = 0.0
Identities = 267/501 (53%), Positives = 352/501 (70%), Gaps = 27/501 (5%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDK----YPVRSQVEPGYLKKRLPESAPYSPESVETILQ 61
++ R QGH+ VDF+A+YYKN+ +PV SQV+PGYL+ LP+SAP PES++ +L
Sbjct: 56 SELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLD 115
Query: 62 DVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIV 121
DV + I+PGITHWQSP+YFAY+ +++SVAG +GEML++G +VVG W++SPAA ELE IV
Sbjct: 116 DVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIV 175
Query: 122 MDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGRENISKLVVYSS 181
+DWL ++L LP FL +GNGGGVIQGT CEA+L + AARDR+LKK+G+ + +LVVY S
Sbjct: 176 LDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGS 235
Query: 182 DQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATV 241
DQTH +F+KA I GI +NIR +KT S++YG+ ES+ I+ D+ IP F+CATV
Sbjct: 236 DQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATV 295
Query: 242 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNPHK 301
GTT+ AVDPL PL ++AK++GIW+HVDAAYAG+ACICPE+R FIDG+E DSF+ N HK
Sbjct: 296 GTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHK 355
Query: 302 WLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRSL 361
WLF C LWVKD L+ L TNP+YL+ + + K+ V YKDWQI+L RRFRSL
Sbjct: 356 WLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK---KDTVVNYKDWQISLSRRFRSL 412
Query: 362 KLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSAVMD 421
KLW+V+R +G NLRNFIR HV +AK FE V D FEV R FSLVCFR+ P
Sbjct: 413 KLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVD--- 469
Query: 422 KLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGNS 481
+E++ NE NRELL ++N +GK+F++H + G +VLRFA G
Sbjct: 470 -----------------GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAP 512
Query: 482 MTMESHVRAAWTVVQEHLEAF 502
+T E HV AW ++Q+H F
Sbjct: 513 LTEEKHVTEAWQIIQKHASKF 533
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 478 bits (1232), Expect = e-168
Identities = 189/379 (49%), Positives = 248/379 (65%), Gaps = 11/379 (2%)
Query: 38 PGYLKKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEML 97
PGYL+ LPE+AP PE + IL D++++I+PG+T W SPN+ AYFPA +S ++G+ML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 98 SSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTL 157
S N G W SSPA ELEN+VMDWL +ML LPK FL SG GGGV+QG + E+ L L
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120
Query: 158 TAARDRVLKKI---GRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYG 214
AAR + ++++ G+ ++ KLV Y+SDQ H + +KAA I G++ +R I T + +
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVE---LREIPTDE--NGK 175
Query: 215 LSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 274
+ + I D E LIP F+CAT+GTT A DPL+ L D+ ++ +W+HVDAAYAG
Sbjct: 176 MRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAG 235
Query: 275 SACICPEFRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNE 334
SA ICPEFRH++ G+E DSFSFNPHKW+ LDC LWV+D L L NP+YL +
Sbjct: 236 SAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHN 295
Query: 335 ATDQEPKEQEVGYKDWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVT 394
+ V Y DWQI L RRFR LKLW V+R++GV L+N IR HV +AK FE LV
Sbjct: 296 DKQS---DVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVR 352
Query: 395 SDKRFEVAFPRNFSLVCFR 413
D RFE+ R LVCFR
Sbjct: 353 KDSRFEICAERGLGLVCFR 371
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 319 bits (821), Expect = e-106
Identities = 126/423 (29%), Positives = 183/423 (43%), Gaps = 81/423 (19%)
Query: 79 YFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFS 138
+ A F T ++ EML+S N + W SPAA E+E V++WL ++ LP S
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP-----S 55
Query: 139 GNGGGVIQGTTCEALLCTLTAARDRV---LKKIGRENISKLVVYSSDQTHCAFQKAAQIV 195
+ GV E+ L L AARDR LK G I KLV+ SDQ H + +KAA +
Sbjct: 56 EDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL 115
Query: 196 GIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPL 255
+ +R + + + E++ + I+ D L P+ + AT GTT A+DPL+ +
Sbjct: 116 DV---KVRLVPVDEDGR--MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 256 CDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVK 315
D+A+++ +W+HVDAAY G PE RH G+E VDS S +PHK+ L C + V
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV- 229
Query: 316 DPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRSLKLWVVIRNFGVANL 375
R+LKLW +R FG
Sbjct: 230 -------------------------------------------RALKLWATLRRFGRDGY 246
Query: 376 RNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSAVMDKLRTKYKNGTYDQY 435
I V +AK L+ +D FE+ N SLVCFR+ PS +D+L
Sbjct: 247 GEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDEL------------ 294
Query: 436 RQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAAWTVV 495
N +L + +N G + +GG VLRF N +T A +
Sbjct: 295 ------------NYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDI 342
Query: 496 QEH 498
+
Sbjct: 343 ERA 345
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 222 bits (567), Expect = 7e-67
Identities = 110/489 (22%), Positives = 187/489 (38%), Gaps = 56/489 (11%)
Query: 20 MAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQE-HIVPGITHWQSPN 78
+ + K + P + AP E +E +L ++ E I + P
Sbjct: 4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPR 63
Query: 79 YFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFS 138
+ V + E+L S N D SPAA ELE V++ L +L P+
Sbjct: 64 ANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS-- 121
Query: 139 GNGGGVIQGTTCEALLCTLTAARDRVLKKIGRENI---SKLVVYSSDQTHCAFQKAAQIV 195
G G T EA L L AAR+R K+ E+ K + S+ H +F+KAA+ +
Sbjct: 122 ---GTFTSGGT-EANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL 177
Query: 196 GIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPL 255
G+ + + + T Y + +++ I+ + I + T GTT ++D ++ L
Sbjct: 178 GLGLRRVPTVPTD----YRIDVDALEEAIDEN----TIGGVVVGTAGTTDTGSIDDIEEL 229
Query: 256 CDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVECVDSFSFNPHKWLFTTLDCCCLWV 314
D+A+++GIW+HVDAA+ G E + G+E VDS + + HK+ + C +
Sbjct: 230 ADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLF 289
Query: 315 KDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITL-CRR--FRSLKLWVVIRNFG 371
+D L L YL G T+ R ++L L+ +R G
Sbjct: 290 RDEEALRRILIFADYYLP-------------GGGIPNFTILGSRPGRQALALYANLRRLG 336
Query: 372 VANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSAVMDKLRTKYKNGT 431
R + + +A+ + FE+ +V FR+
Sbjct: 337 REGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTL---------- 386
Query: 432 YDQYRQFSEEERTNEFNRELLESINVSGK--VFMTHAIVGGIYVLRFAAGNSMTMESHVR 489
ER + ++ + G VF TH V G L+F N +
Sbjct: 387 ------ADLSERLDRRGWQVPAQLLPKGLAIVFGTH--VTGRQGLKFIVANLLI-TDREE 437
Query: 490 AAWTVVQEH 498
+ +++E
Sbjct: 438 SLLALIEEP 446
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 89.0 bits (221), Expect = 7e-19
Identities = 86/328 (26%), Positives = 153/328 (46%), Gaps = 46/328 (14%)
Query: 34 SQVEPGYLKKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATS------ 87
S++E + +PE + E + +L + H V H SP++ + TS
Sbjct: 51 SEIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSV----HTASPSFIGHM--TSALPYFM 104
Query: 88 -SVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWL-----GQMLDLPKSFLFSGNG 141
++ + M++ N+V ++ +S A LE V+ + GQ D + ++ S +
Sbjct: 105 LPLSKL---MVALNQNLVKIE--TSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADH 159
Query: 142 --GGVIQGTTCEALLCTLTAARDRVLKK------IGRENI---------SKLVVYSSDQT 184
G G T A + L AR+R+LK + RE + L + S++
Sbjct: 160 SLGAFCSGGTV-ANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERG 218
Query: 185 HCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELI-PLFLCATVGT 243
H + KAA ++GI R N+ AIKT ++ + A L ++ + I PL + GT
Sbjct: 219 HYSLGKAADVLGIGRDNLIAIKTDANNRIDVDA---LRDKCAELAEQNIKPLAIVGVAGT 275
Query: 244 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNPHKWL 303
T +DPL + D+A++ G HVDAA+ G+ + +RH + G+E DS + + HK L
Sbjct: 276 TETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQL 335
Query: 304 FTTLDCCCLWVKDPSCLLSTLSTNPQYL 331
+ + + KDP+ L+S + + +Y+
Sbjct: 336 YVPMGAGMVLFKDPA-LMSAIEHHAEYI 362
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 76.8 bits (190), Expect = 3e-15
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 33/230 (14%)
Query: 112 PAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGRE 171
P +LE ++ LG++L LP ++ G + G T EA + + AAR+ L K +
Sbjct: 55 PGTAKLEEEAVEMLGELLHLPDAY------GYITSGGT-EANIQAVRAARN--LAKAEKP 105
Query: 172 NISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAE 231
NI VV S H +F KAA ++G+ +R Y + ++V I+ +
Sbjct: 106 NI---VVPES--AHFSFDKAADMLGV---ELRRAPLDDD--YRVDVKAVEDLIDDNTIG- 154
Query: 232 LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---G 288
+ GTT + VDP+ L +A + GI++HVDAA+ G + P +
Sbjct: 155 -----IVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGG--FVIPFLDDPPNFDFS 207
Query: 289 VECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYL--KNEAT 336
+ VDS + +PHK + + +D S L L+ + YL K +AT
Sbjct: 208 LPGVDSITIDPHKMGLAPIPAGGILFRDES-YLDALAVDTPYLTSKKQAT 256
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 76.2 bits (188), Expect = 6e-15
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 112 PAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGRE 171
P ++E V+ LG +L LP ++ G ++ G T EA + + AA++ L + +
Sbjct: 55 PGTKKIEEEVVGSLGNLLHLPDAY------GYIVSGGT-EANIQAVRAAKN--LAREEKR 105
Query: 172 NISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAE 231
++V S H +F+KAA+++G+ +R + Y + + V I+ +
Sbjct: 106 T-PNIIVPES--AHFSFEKAAEMLGL---ELRYAPLDED--YTVDVKDVEDLIDDNTIG- 156
Query: 232 LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGS----ACICPEFRHFID 287
+ GTT + +D ++ L +A + GI++HVDAA+ G F
Sbjct: 157 -----IVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF 211
Query: 288 GVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYL--KNEAT 336
+ V S + +PHK + + + + S L LS + YL K +AT
Sbjct: 212 SLPGVQSITIDPHKMGLSPIPAGGILFRSKS-YLKYLSVDAPYLTVKKQAT 261
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 55.1 bits (133), Expect = 6e-09
Identities = 40/174 (22%), Positives = 58/174 (33%), Gaps = 27/174 (15%)
Query: 133 KSFLFSGNGGGVIQ-GTTC--EALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQ 189
L GN V T EA L L D V H
Sbjct: 10 ARLLQPGNDKAVFVPSGTGANEAALLALLGPGD--------------EVIVDANGH--GS 53
Query: 190 KAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAV 249
+ + + + GL I +++A+ + T TT+ +
Sbjct: 54 RYWVAAELAGAKPVPVPVDDAGYGGLDV-----AILEELKAKPNVALIVITPNTTSGGVL 108
Query: 250 DPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNPHKWL 303
PLK + +AK++GI + VDAA AG A P G D +F+ HK L
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG---ADVVTFSLHKNL 159
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 52.0 bits (125), Expect = 4e-07
Identities = 76/326 (23%), Positives = 126/326 (38%), Gaps = 84/326 (25%)
Query: 94 GEMLSSGFNVVGLDWISSP----AAVELENIVMDWLGQMLDLP--KSFLFSGNGGGVIQG 147
S N G D S + + E VM++ ++ +P +S+ + NGG
Sbjct: 40 KRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGG----- 93
Query: 148 TTCEALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKT 207
E L AR E +Y S TH + K A+++ I + I
Sbjct: 94 --TEGNLYGCYLAR---------ELFPDGTLYYSKDTHYSVSKIARLLRIKSRVIT---- 138
Query: 208 TKSSSYGLSAESVLSQINLDVEAELI------PLFLCATVGTTAITAVDPLKPLCDVAKQ 261
S G +I+ D I P + A +GTT A+D +K + ++ K+
Sbjct: 139 --SLPNG--------EIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKK 188
Query: 262 FGI---WVHVDAAYAGSACICPEFRH-----FIDGVECVDSFSFNPHKWLFTTLDCC--- 310
GI ++H DAA +G I P + F DG +DS + + HK++ + + C
Sbjct: 189 IGIDDYYIHADAALSGM--ILPFVNNPPPFSFADG---IDSIAISGHKFIGSPMPCGIVL 243
Query: 311 --CLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRR-FRSLKLWVVI 367
+V +S + Y +G +D I+ R +L LW I
Sbjct: 244 AKKKYV-------ERISVDVDY--------------IGSRDQTISGSRNGHTALLLWAAI 282
Query: 368 RNFGVANLRNFIRSHVGMAK-LFERL 392
R+ G LR ++ + MA+ +RL
Sbjct: 283 RSLGSKGLRQRVQHCLDMAQYAVDRL 308
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 44.8 bits (106), Expect = 9e-05
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 169 GRENISKLVVYSSDQT-HCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLD 227
+++ KL + QT H ++ KAA I+GI + + S+Y + + I
Sbjct: 215 SGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPV--DSNYRMDINELEKIIR-K 271
Query: 228 VEAELIP-LFLCATVGTTAITAVDPLKPLCDVAKQF---GIW--VHVDAAYAGSA 276
+ AE P L + VG+T AVD + + + + GI+ +HVDAAY G
Sbjct: 272 LAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVEC--VDSFSFNPHKWLFTTL 307
P+K + ++A + G V VDAA A H ID V+ D +F+ HKWL
Sbjct: 180 PVKEIAELAHEHGALVLVDAAQA--------AGHLPID-VQELGCDFLAFSGHKWLLGPT 230
Query: 308 DCCCLWVKDPSCLLSTL 324
L+V+ LL L
Sbjct: 231 GIGVLYVRKE--LLEEL 245
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 39.8 bits (93), Expect = 0.002
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 168 IGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLD 227
+GRE ++Y+S ++H + KAA++ ++ + + S E I+ D
Sbjct: 104 VGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTL---------PSGE-----IDYD 149
Query: 228 -VEAELI-----PLFLCATVGTTAITAVDPLKPLCDVAKQFGI-----WVHVDAAYAGSA 276
+E L P L +GTT AVD L + + K+ G ++H D A G
Sbjct: 150 DLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLM 209
Query: 277 CICPEFRHFIDGVECVDSFSFNPHKWLFTTLDC 309
+ + + S S + HK+L + C
Sbjct: 210 MPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPC 242
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 33.9 bits (78), Expect = 0.21
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 25/110 (22%)
Query: 238 CATVGTTAITAVDPLKPLCDVAKQFG------IWVHVDAAYAGSACICP--------EFR 283
+GTT + +K L D ++ I +HVDAA G I P +FR
Sbjct: 191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGG--FIAPFVYPDLEWDFR 248
Query: 284 HFIDGVECVDSFSFNPHKWLFTTLDCCCLWV--KDPSCLLSTLSTNPQYL 331
V S + + HK+ WV +D L L + YL
Sbjct: 249 L-----PRVKSINVSGHKYGLVYPGVG--WVIWRDEEALPEELIFHVNYL 291
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 32.5 bits (75), Expect = 0.48
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
PL L D+AK++G + VD A++
Sbjct: 150 PLPELVDLAKKYGAILFVDEAHS 172
>gnl|CDD|234183 TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein.
Members of this protein family belong to the Rhs
element Vgr protein family (see TIGR01646), but
furthermore all are found in genomes with type VI
secretion loci. However, members of this protein family,
although recognizably correlated to type VI secretion
according the partial phylogenetic profiling algorithm,
are often found far the type VI secretion locus.
Length = 513
Score = 32.2 bits (74), Expect = 0.63
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 432 YDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAA 491
YD +F ++ER R LE++ K G R A G T+ H RAA
Sbjct: 250 YDYPGRFKDQERGKRLARVRLEALRADAKRAE-----GESNCRRLAPGYLFTLSGHPRAA 304
Query: 492 ----WTVVQEHLEA 501
+ VV H
Sbjct: 305 LNREYLVVSVHHHG 318
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 32.0 bits (73), Expect = 0.81
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 17/109 (15%)
Query: 240 TVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID--GVECVDSFSF 297
T + + ++ L + ++ G V VDA + ID D +
Sbjct: 163 TAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAP-------HGLIDVQATGA-DFLTC 214
Query: 298 NPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVG 346
+ +K+ + LW + L P Y + D P+ E+G
Sbjct: 215 SAYKFFGPHMG--ILWGRPE-----LLMNLPPYKLTFSYDTGPERFELG 256
>gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Firmicutes, Proteobacteria, Actinobacteria, and
Cyanobacteria. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 352
Score = 31.9 bits (73), Expect = 0.83
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 250 DPLKPLCDVAKQFGIWVHVDA 270
D K LC A ++GI + VD
Sbjct: 68 DDFKALCAAAHKYGIKIIVDV 88
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 31.8 bits (73), Expect = 0.87
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA-GSACICPEFRHFIDGVECVDSFSFNPHKW 302
P+ + ++ K+ GI HVDA A G I E VD SF+ HK+
Sbjct: 159 PIAEIGEICKERGILFHVDAVQAVGKIPIDLE-------ELGVDLLSFSAHKF 204
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 31.4 bits (72), Expect = 1.1
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 163 RVLKKIGRENISKLVVYSSDQTHCAF---QKAAQIVGIDRKNIRAIKTTKSSSYGLSAES 219
R LK G E ++ + + H Q+ A+ G +R I + L A
Sbjct: 83 RSLKP-GDE-----ILVTEMEHHANLVPWQELAKRTGA---TVRVIPVDPNGLLDLDA-- 131
Query: 220 VLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 271
+ + + + + T V+P++ + +A ++G V VDAA
Sbjct: 132 LEKLLTPRTKL----VAITHVSNVTGT--VNPVEEIGKLAHEYGALVVVDAA 177
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 30.8 bits (70), Expect = 1.6
Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 177 VVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLF 236
+ T+ ++ + ++ G + + S+ + L +++ + + E + L
Sbjct: 92 AILVPAPTYPSYIRIFRLAGGE---VVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLH 148
Query: 237 LCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 274
T + ++ L+ L D+AK+ I + VD AYAG
Sbjct: 149 TSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAG 186
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 30.4 bits (69), Expect = 2.0
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 249 VDPLKPLCDVAKQFGIWVHVDAAYAGSACI---CPEFRHFIDGVECVDSFSF 297
+D LK + +AK+ G+ +H+D A +A + VDS SF
Sbjct: 145 LDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY----KSGVDSVSF 192
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 29.9 bits (68), Expect = 3.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
PL L ++A+++G ++VD A+A
Sbjct: 189 PLPELVELAEKYGALLYVDEAHA 211
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 30.2 bits (68), Expect = 3.1
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 25/118 (21%)
Query: 168 IGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINL- 226
+GRE ++Y+S ++H + KAA++ ++ + + +S E I+
Sbjct: 171 VGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL---------VSGE-----IDCA 216
Query: 227 DVEAELI-----PLFLCATVGTTAITAVDPLKPLCDVAKQFG-----IWVHVDAAYAG 274
D +A+L+ P + +GTT AVD L + ++ G ++H D A G
Sbjct: 217 DFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFG 274
>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and
modification].
Length = 222
Score = 29.3 bits (65), Expect = 4.2
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 159 AARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAE 218
+ R +GREN + Q +++ + GI +R++ K GL
Sbjct: 83 SRRSEEKSSLGREN-QTTHDFRQQQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGI- 140
Query: 219 SVLSQINL-DVEAELIPLF 236
Q+N D AE +P +
Sbjct: 141 ----QVNYEDDLAEEMPQY 155
>gnl|CDD|213586 TIGR01104, V_PPase, vacuolar-type H(+)-translocating
pyrophosphatase. This model describes proton
pyrophosphatases from eukaryotes (predominantly plants),
archaea and bacteria. It is an integral membrane protein
and is suggested to have about 15 membrane spanning
domains. Proton translocating inorganic pyrophosphatase,
like H(+)-ATPase, acidifies the vacuoles and is pivotal
to the vacuolar secondary active transport systems in
plants [Transport and binding proteins, Cations and iron
carrying compounds].
Length = 695
Score = 29.8 bits (67), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 455 INVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAAWTVVQE 497
++V VG + F+ SMTM+S RAA +V+E
Sbjct: 502 VDVLTPKVFIGLFVGAMLPYWFS---SMTMKSVGRAALKMVEE 541
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 29.4 bits (67), Expect = 5.0
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 30/96 (31%)
Query: 225 NLDVEA--ELIPLFLCATVGTTAITAVD------PLKPLCDVAKQFGIWVHVDAA----- 271
N+D E I T T AI V + + +AK+ G+ V DAA
Sbjct: 93 NIDPELIEAAI------TPRTKAIIPVHLYGNPADMDAIMAIAKRHGLPVIEDAAQALGA 146
Query: 272 -YAGSACICPEFRHFIDGVECVDSFSFNPHKWLFTT 306
Y G F +FSF+P K TT
Sbjct: 147 TYKGRKVGT--FGDAG-------AFSFHPTK-NLTT 172
>gnl|CDD|225226 COG2351, COG2351, Transthyretin-like protein [General function
prediction only].
Length = 124
Score = 28.1 bits (63), Expect = 5.5
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 433 DQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAG 479
+ + TN R +++ ++G+ T GIY L F G
Sbjct: 36 GNQWELLKTVVTNADGR--IDAPLLAGETLAT-----GIYELVFHTG 75
>gnl|CDD|227209 COG4872, COG4872, Predicted membrane protein [Function unknown].
Length = 394
Score = 29.0 bits (65), Expect = 6.1
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 90 AGIVGEMLSSGFNVVGLDWISSPA-AVELENIVMDWLGQMLDLPKSFLFSG 139
G + + +G G+ ++ V L + ++ +ML FLF+G
Sbjct: 317 LGFIVAIPFAGRENNGIRDLAYFIFNVLLAVLYFGFIQEMLKTSGFFLFAG 367
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 29.0 bits (66), Expect = 6.8
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 446 EFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAAWTVVQE 497
+ S+++S + ++GG+ F+A + M + RAA +V+E
Sbjct: 470 LLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSA---LAMTAVGRAAGAMVEE 518
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 29.0 bits (66), Expect = 7.3
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 442 ERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAAWTVVQE 497
E + + S+++ + ++GG+ F+A +TM++ RAA +V+E
Sbjct: 478 EEVSLKLGSGILSLDLLNPEVLVGLLIGGMLPFLFSA---LTMKAVGRAAGAMVEE 530
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 28.6 bits (65), Expect = 7.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
PL +CD+A ++ V VD ++A
Sbjct: 192 PLPEICDLADKYDALVMVDDSHA 214
>gnl|CDD|214850 smart00842, FtsA, Cell division protein FtsA. FtsA is essential
for bacterial cell division, and co-localizes to the
septal ring with FtsZ. It has been suggested that the
interaction of FtsA-FtsZ has arisen through coevolution
in different bacterial strains.
Length = 187
Score = 28.2 bits (64), Expect = 8.5
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 86 TSSVAGIVGEMLSSG-FNVVG 105
TS + +V E+ G NV+G
Sbjct: 8 TSKIKALVAEVDEDGEINVIG 28
>gnl|CDD|237706 PRK14405, PRK14405, membrane protein; Provisional.
Length = 202
Score = 28.2 bits (63), Expect = 9.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 59 ILQDVQEHIVP-GITHWQSPNYFAYFPATSSVAGIVG 94
+L DV + I I + + A+FPA + +A I+G
Sbjct: 58 LLLDVVKGIAAVWIGRLLTGDGAAWFPALAGLAAIIG 94
>gnl|CDD|202068 pfam01967, MoaC, MoaC family. Members of this family are involved
in molybdenum cofactor biosynthesis. However their
molecular function is not known.
Length = 136
Score = 27.6 bits (62), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 223 QINLDVEAELIPLFLCATVGTTAITAV 249
++LD E + + + ATV TT T V
Sbjct: 71 DVDLDPEEDYNRIKITATVRTTGKTGV 97
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 28.5 bits (64), Expect = 9.9
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 248 AVDPLKPLCDVAKQFGIWVHVDAAYA 273
+ P++ +CD+A ++G ++D +A
Sbjct: 192 DIAPIEEICDLADKYGALTYLDEVHA 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,576,022
Number of extensions: 2466551
Number of successful extensions: 2264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 39
Length of query: 502
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 401
Effective length of database: 6,457,848
Effective search space: 2589597048
Effective search space used: 2589597048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)