RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037144
(502 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 597 bits (1540), Expect = 0.0
Identities = 202/510 (39%), Positives = 285/510 (55%), Gaps = 48/510 (9%)
Query: 1 MDQAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETIL 60
M+ A +FRR+G VD+MA+Y + I+ V V+PGYL+ +P +AP P++ E IL
Sbjct: 1 MN---ASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDIL 57
Query: 61 QDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENI 120
QDV++ I+PG+THW SP +FAYFP SS ++ +ML +G W +SPA ELE +
Sbjct: 58 QDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETV 117
Query: 121 VMDWLGQMLDLPKSFLF--SGNGGGVIQGTTCEALLCTLTAARDRVLKKIGREN------ 172
+MDWLG+ML LP++FL +G GGGVIQG+ EA L L AAR +V++++ +
Sbjct: 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQG 177
Query: 173 --ISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+ KLV Y+SDQ H + ++A I G+ ++AI + + + A ++ + D A
Sbjct: 178 AVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSD--GKFAMRASALQEALERDKAA 232
Query: 231 ELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 290
LIP F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE
Sbjct: 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 291 CVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDW 350
DSF+FNPHKWL DC +WVK + L +P YLK+ Y+ W
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS---GLITDYRHW 349
Query: 351 QITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLV 410
Q+ L RRFRSLK+W V R +GV L+ +IR HV ++ FE V D RFEV LV
Sbjct: 350 QLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLV 409
Query: 411 CFRVTPSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGG 470
CFR+ S + N LLE IN + K+ + + G
Sbjct: 410 CFRLKGS---------------------------DGLNEALLERINSARKIHLVPCRLRG 442
Query: 471 IYVLRFAAGNSMTMESHVRAAWTVVQEHLE 500
+VLRFA + HVR AW ++
Sbjct: 443 QFVLRFAICSRKVESGHVRLAWEHIRGLAA 472
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 594 bits (1534), Expect = 0.0
Identities = 198/510 (38%), Positives = 281/510 (55%), Gaps = 51/510 (10%)
Query: 1 MDQAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETIL 60
M+ A EF+ VDF+AEY +NI + V +V+PGYLK +P++AP PE + ++
Sbjct: 1 ME---APEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVM 57
Query: 61 QDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENI 120
QD++ I+PG+THW SP + AYFP +S IV +MLS +G WI+SPA ELE +
Sbjct: 58 QDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVV 117
Query: 121 VMDWLGQMLDLPKSFLFS--GNGGGVIQGTTCEALLCTLTAARDRVLKKIGREN------ 172
+MDWLG+ML+LP FL G GGGVIQGT E+ L L A+ + LK++ +
Sbjct: 118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEH 177
Query: 173 --ISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+ KLV Y SDQ H + ++A + G+ ++++ S ++ + ++ I DV
Sbjct: 178 TILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ------SENHRMRGAALEKAIEQDVAE 231
Query: 231 ELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 290
LIP + T+GTT A D L V + +W+HVDAAYAGSA ICPE+RH + G+E
Sbjct: 232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE 291
Query: 291 CVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDW 350
DSF+FNPHKW+ DC +W+KDPS +++ + +P YLK++ P Y+ W
Sbjct: 292 SADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP-----DYRHW 346
Query: 351 QITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLV 410
QI L RRFR+LKLW V+R +GV NL+ IR H AK F L +D RFE+A N LV
Sbjct: 347 QIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLV 406
Query: 411 CFRVTPSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGG 470
CFR+ S NE N LL+ IN G + + A +
Sbjct: 407 CFRLKGS---------------------------NERNEALLKRINGRGHIHLVPAKIKD 439
Query: 471 IYVLRFAAGNSMTMESHVRAAWTVVQEHLE 500
+Y LR A + T + +W V +
Sbjct: 440 VYFLRMAICSRFTQSEDMEYSWKEVSAAAD 469
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 593 bits (1531), Expect = 0.0
Identities = 185/512 (36%), Positives = 276/512 (53%), Gaps = 51/512 (9%)
Query: 1 MDQAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETIL 60
M+ +E+R +G VD++ +Y + + V V+PGYL+ +LPESAP P+S ++I
Sbjct: 6 ME---PEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIF 62
Query: 61 QDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENI 120
D++ I+PG+ HWQSP+ AY+PA +S ++G+ML+ N +G W SSPA ELE
Sbjct: 63 GDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMN 122
Query: 121 VMDWLGQMLDLPKSFLF---SGNGGGVIQGTTCEALLCTLTAARDRVLKKIGREN----- 172
VMDWL +ML LP+ FL S GGGV+Q T E+ L L AAR + ++
Sbjct: 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADE 182
Query: 173 ---ISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVE 229
++LV Y+SDQ H + +KA I + ++ + ++ L E++ I D +
Sbjct: 183 SSLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQ 237
Query: 230 AELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV 289
L+P+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A +CPEFR F+ G+
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGI 297
Query: 290 ECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKD 349
E DSF+FNP KW+ DC WVKD L T S NP YL++ + +
Sbjct: 298 EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATD-----FMH 352
Query: 350 WQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSL 409
WQI L RRFRS+KLW VIR+FGV NL+ +R MAK FE LV +D FE+ R+ L
Sbjct: 353 WQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGL 412
Query: 410 VCFRVTPSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVG 469
V FR+ N +L+ I +G++F+ A +
Sbjct: 413 VVFRLKGP---------------------------NSLTENVLKEIAKAGRLFLIPATIQ 445
Query: 470 GIYVLRFAAGNSMTMESHVRAAWTVVQEHLEA 501
++RF + T + W ++++
Sbjct: 446 DKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 563 bits (1452), Expect = 0.0
Identities = 101/504 (20%), Positives = 199/504 (39%), Gaps = 34/504 (6%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDK--YPVRSQVEPGYLKKRLPE---SAPYSPESVETIL 60
++ + VD + Y + V P L + + PES+E IL
Sbjct: 18 EEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQIL 77
Query: 61 QDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENI 120
D ++ + G+ P +F + G+ GE L+S N + +P V +E I
Sbjct: 78 VDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQI 136
Query: 121 VMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKI---GRENISKLV 177
+ + +++ S +G G+ + + ++ AAR + ++ G + KLV
Sbjct: 137 TLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLV 191
Query: 178 VYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFL 237
+++S+Q+H + +KA +G N+ IK + ++I + +P ++
Sbjct: 192 LFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYV 249
Query: 238 CATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSF 297
AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + RH ++G+E +S ++
Sbjct: 250 NATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTW 309
Query: 298 NPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRR 357
NPHK + L C + VK+ L YL + D I R
Sbjct: 310 NPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQY---DVSYDTGDKAIQCGRH 366
Query: 358 FRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAF--PRNFSLVCFRVT 415
K W++ + G N I + +A+ + + + FE+ F + VCF
Sbjct: 367 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYI 426
Query: 416 PSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHA-IVGGIYVL 474
P ++ + E+ ++ ++ + SG + +
Sbjct: 427 PQSLRGVPDSP------------QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFF 474
Query: 475 RFAAGNSMTMESHVRAAWTVVQEH 498
R N +S + ++
Sbjct: 475 RMVISNPAATQSDIDFLIEEIERL 498
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 556 bits (1435), Expect = 0.0
Identities = 110/501 (21%), Positives = 197/501 (39%), Gaps = 31/501 (6%)
Query: 3 QAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQD 62
A R + VD + ++ + EP LK+ L ES + IL+
Sbjct: 37 VAVEALLRAVFGVVVDEAIQKGTSVSQKVC-EWKEPEELKQLLDLELRSQGESQKQILER 95
Query: 63 VQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVM 122
+ I + P +F + + G +++ N + +P V +E V+
Sbjct: 96 CRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVL 154
Query: 123 DWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVL---KKIGRENISKLVVY 179
L ++ +G G+ + + + AR + K+ G + L ++
Sbjct: 155 RKLRALVGWS-------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALF 207
Query: 180 SSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCA 239
+S + H + QK A +G+ ++R +K + E + QI + +P + A
Sbjct: 208 TSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSA 265
Query: 240 TVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNP 299
T GTT + A DPL+ + DV ++ G+W+HVDAA+ GS + RH +DG++ DS ++NP
Sbjct: 266 TSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNP 325
Query: 300 HKWLFTTLDCCCLWVKDPSCLL-STLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRF 358
HK L L C L ++D S LL + YL + + + D + RR
Sbjct: 326 HKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFY---DVALDTGDKVVQCGRRV 382
Query: 359 RSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSA 418
LKLW++ + G L I +A+ + + FE+ F VCF P +
Sbjct: 383 DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPS 442
Query: 419 VMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGG-IYVLRFA 477
+ K + ER ++ L E + G + + + G R
Sbjct: 443 LRGKQESP------------DYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVV 490
Query: 478 AGNSMTMESHVRAAWTVVQEH 498
NS + + ++
Sbjct: 491 VANSALTCADMDFLLNELERL 511
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 554 bits (1430), Expect = 0.0
Identities = 105/503 (20%), Positives = 187/503 (37%), Gaps = 51/503 (10%)
Query: 6 AQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPE-SAPYSPESVETILQDVQ 64
+ EF M ++ ++ S ++P L+ + +++++ DV
Sbjct: 31 SAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVA 88
Query: 65 EHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDW 124
E + Q P+ A+ + + E + + N W + +A +E V++W
Sbjct: 89 ELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNW 148
Query: 125 LGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGRENI---------SK 175
L DL + G+ ++ L ARD + K+ +I K
Sbjct: 149 LCDKYDLSEK------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADK 202
Query: 176 LVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPL 235
L + S ++H QK+A +G+ K + + + + + I LIP
Sbjct: 203 LRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPF 260
Query: 236 FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSF 295
+ T GTT A+D L + D+A + +W+HVD AY G A I + + GVE S
Sbjct: 261 AIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERAHSI 319
Query: 296 SFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC 355
S + HK + T+ C L V D S L + YL E ++ D I
Sbjct: 320 SVDFHKLFYQTISCGALLVNDKS-NFKFLLHHADYLNREH------DELPNLVDKSIATT 372
Query: 356 RRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVT 415
+RF +LK+++ ++N G L + + ++ ++ +FE+ + S V FR T
Sbjct: 373 KRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRAT 432
Query: 416 PSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLR 475
E +E N+ L G + IV G L+
Sbjct: 433 H-----------------------ETADLDELNKALRLEALTRGIAVLGETIVDGKTALK 469
Query: 476 FAAGNSMTMESHVRAAWTVVQEH 498
F N S + + +
Sbjct: 470 FTILNPCLTTSDFESLLSKINML 492
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 161 bits (408), Expect = 6e-44
Identities = 67/421 (15%), Positives = 136/421 (32%), Gaps = 50/421 (11%)
Query: 20 MAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNY 79
+ + ++I+ +RS + + LP + + V L + + T W+
Sbjct: 14 VTKVKQSIEDELIRSDSQLMNFPQ-LPSNG-IPQDDVIEELNKLNDL--IPHTQWKEGKV 69
Query: 80 FAYFP-ATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFS 138
+ + L PA ++E+ V+ + +M + P
Sbjct: 70 SGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD---- 125
Query: 139 GNGGGVIQGTTCEALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGID 198
G G T E+LL +A+ L G I++ + + H F KAA G+
Sbjct: 126 TGCGTTTSGGT-ESLLLACLSAKMYALHHRG---ITEPEIIAPVTAHAGFDKAAYYFGMK 181
Query: 199 RKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDV 258
+R ++ ++ Y + V IN + + L + D ++ L +
Sbjct: 182 ---LRHVELDPTT-YQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKI 231
Query: 259 AKQFGIWVHVDAAYAG------SACICPEFRHFIDGVECVDSFSFNPHKWLFTTLDCCCL 312
A+++ + +HVD+ V V S S + HK+ F +
Sbjct: 232 AQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVI 291
Query: 313 WVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC---RRFRSLKLWVVIRN 369
++ + NP + G TL + W + N
Sbjct: 292 MYRNSDLRMHQYYVNPAWT--------------GGLYGSPTLAGSRPGAIVVGCWATMVN 337
Query: 370 FGVANLRNFIRSHVGMAK-LFERLVTSDKRFEVAFPRNFSLVCFR---VTPSAVMDKLRT 425
G + VG A + + + ++ +S++ F + + D+L
Sbjct: 338 MGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSK 397
Query: 426 K 426
K
Sbjct: 398 K 398
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 155 bits (393), Expect = 1e-41
Identities = 68/431 (15%), Positives = 124/431 (28%), Gaps = 51/431 (11%)
Query: 9 FRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQEHIV 68
+ Q D ++ ++ + RLP + IL ++
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQIKPYRDRFPS-HARLPRA----GLPRAEILAEIAAMGA 90
Query: 69 PGITHWQSPNYFAY-FPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWLGQ 127
W+ + + E+ + L P+ + E V+
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 128 MLDLPKSFLFSGNGGGVI-QGTTCEALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHC 186
ML + G G + G T E+LL + RD G I+ H
Sbjct: 151 MLGGDAA---GGTVCGTVTSGGT-ESLLLAMKTYRDWARATKG---ITAPEAVVPVSAHA 203
Query: 187 AFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAI 246
AF KAAQ GI + Y ++ I + + + +
Sbjct: 204 AFDKAAQYFGIK---LVRTPLDAD--YRADVAAMREAITPN------TVVVAGSAPGYPH 252
Query: 247 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----FRHFIDGVECVDSFSFNPHK 301
VDP+ + +A + GI HVDA G E F +E V S S + HK
Sbjct: 253 GVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHK 312
Query: 302 WLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLC---RRF 358
+ + + + P L + G + T
Sbjct: 313 YGYGAKGTSVILYRRPDLLHYQYFIAADWP--------------GGLYFSPTFAGSRPGA 358
Query: 359 RSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFR---VT 415
S W + + G + R + A + V + ++ ++ +
Sbjct: 359 LSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDELN 417
Query: 416 PSAVMDKLRTK 426
VM+++ +
Sbjct: 418 IYQVMEEMAGR 428
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 138 bits (348), Expect = 6e-36
Identities = 43/394 (10%), Positives = 108/394 (27%), Gaps = 75/394 (19%)
Query: 42 KKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEM----- 96
+++PE+ E ++ L+ + + A ++
Sbjct: 55 HRKIPEN-GIDDEKIKLFLKFLSMM--------DTDKDPKSVRIGEREARTYSKIHEELS 105
Query: 97 --------LSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGT 148
S + A + + L +
Sbjct: 106 SGFCHGIGRSGNLVDPQPK---ASGASIMYALTNKILESFFKQLGLN----VHAIATPIS 158
Query: 149 TCEALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTT 208
T ++ L+AAR + VV +H + KA VG++ + + +
Sbjct: 159 TGMSISLCLSAARKKYGSN---------VVIYPYASHKSPIKAVSFVGMNMRLVETVLDG 209
Query: 209 KSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHV 268
+ E + + I ++E P + +T+ D + + + + + I +
Sbjct: 210 DR--VYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHII 266
Query: 269 DAAYAGSACICPEFRHFIDGV--ECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLST 326
+ AYA + + VD+ + K L T + ++ D + +
Sbjct: 267 NGAYA---IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS 323
Query: 327 NPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMA 386
P + V + + G N +++
Sbjct: 324 YP------------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSK 359
Query: 387 KLFERLVTSDKRFEVAFPRNFSLVCFRVTPSAVM 420
KL + L+ +++ + ++ +
Sbjct: 360 KLLDELLN-----DLSKKTGGKFLDVESPIASCI 388
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 130 bits (328), Expect = 1e-33
Identities = 71/399 (17%), Positives = 136/399 (34%), Gaps = 58/399 (14%)
Query: 43 KRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFN 102
+ + E S + IL++++++ ++ N F S+V I +++
Sbjct: 3 RNMQEK----GVSEKEILEELKKYRSLD-LKYEDGNIFGSM--CSNVLPITRKIVDIFLE 55
Query: 103 VVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARD 162
D LE + LG +L+ ++ +GG T EA L L ++
Sbjct: 56 TNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG------T-EANLMALRCIKN 108
Query: 163 RVLKK--IGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESV 220
+K G + H +F+K +++ ++ + Y + + V
Sbjct: 109 IWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLE---YIYAPIKED--YTIDEKFV 163
Query: 221 LSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG------ 274
+ + + GTT + +D ++ L +AK+ I++HVDAA+ G
Sbjct: 164 KDAVE-----DYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFL 218
Query: 275 -----SACICPEFRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQ 329
+ +F F G VDS + +PHK + + KD L +
Sbjct: 219 DDKYKKKGVNYKFD-FSLG---VDSITIDPHKMGHCPIPSGGILFKDIG-YKRYLDVDAP 273
Query: 330 YLKNEATDQEPKEQEVGYKDWQITLCR-RFRSLKLWVVIRNFGVANLRNFIRSHVGMAKL 388
YL + I R F + V+R G R + +
Sbjct: 274 YLT-------------ETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLY 320
Query: 389 FERLVTSDKRFEVAFPRNFSLVCFRVT-PSAVMDKLRTK 426
+ + + V P ++V V KLR +
Sbjct: 321 LYKKLKENNFKPVIEP-ILNIVAIEDEDYKEVCKKLRDR 358
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 130 bits (327), Expect = 6e-33
Identities = 63/404 (15%), Positives = 141/404 (34%), Gaps = 53/404 (13%)
Query: 42 KKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGF 101
+ ++PE+ E+ I+ D + + N ++ T+ + +++ S
Sbjct: 29 RFKMPEN-SIPKEAAYQIINDELMLDG----NPRL-NLASF--VTTWMEPECDKLIMSSI 80
Query: 102 NVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAAR 161
N +D P EL+N ++ + + + P + G G + + EA++ A +
Sbjct: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS--EAIMLAGLAFK 138
Query: 162 DRVLKKIGRE--NISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAES 219
+ K E + K + + ++K A+ ++ ++ +K ++ Y + +
Sbjct: 139 RKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVE---LKEVKLSE-GYYVMDPQQ 194
Query: 220 VLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFG------IWVHVDAAYA 273
+ ++ + + + A +G+T + +K L D+ + +HVDAA
Sbjct: 195 AVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASG 248
Query: 274 GSACICPEFRHFID-GVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLK 332
G D + V S + + HK+ + ++ L L + YL
Sbjct: 249 GFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL- 307
Query: 333 NEATDQEPKEQEVGYKDWQITLC--RR-FRSLKLWVVIRNFGVANLRNFIRSHVGMAKLF 389
G TL + + + + + G RN + + +
Sbjct: 308 -------------GADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVL 354
Query: 390 ERLVTSDKRFEVAF-PRNFSLVCFRVTPS------AVMDKLRTK 426
+ +RF + LV F + S + D LR
Sbjct: 355 REGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRY 398
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 101 bits (253), Expect = 2e-23
Identities = 53/346 (15%), Positives = 105/346 (30%), Gaps = 53/346 (15%)
Query: 106 LDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVL 165
+D P + ++ ++ + + P G I + EA + A + R
Sbjct: 71 IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS--EACMLGGMAMKWRWR 128
Query: 166 KK---IGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLS 222
K+ G+ +V + K A+ ++ +R I + + ++
Sbjct: 129 KRMEAAGKPTDKPNLVCGP--VQICWHKFARYWDVE---LREIPMRPGQ-LFMDPKRMIE 182
Query: 223 QINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSA 276
+ + + + T G T + +PL D +F I +H+DAA G
Sbjct: 183 ACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL 236
Query: 277 CICPEFRHFID-GVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEA 335
D + V S S + HK+ L C + +D L L N YL
Sbjct: 237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL---- 292
Query: 336 TDQEPKEQEVGYKDWQITLC--RR-FRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERL 392
G + + R + + + G + +A
Sbjct: 293 ----------GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADE 342
Query: 393 VTSDKRFEVAFPRNFS----LVCFRVTPS--------AVMDKLRTK 426
+ +E VCF++ + ++LR +
Sbjct: 343 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR 388
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 52.0 bits (124), Expect = 3e-07
Identities = 28/210 (13%), Positives = 66/210 (31%), Gaps = 17/210 (8%)
Query: 111 SPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGR 170
S ++ N ++ + ++ + V+ T +L R +
Sbjct: 93 SSLLNKITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLR-------HK 140
Query: 171 ENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+K +++ + K+ G + I + + ++V ++I ++
Sbjct: 141 RPKAKYIIWPR-IDQKSCFKSMVTAGFEPVVIENV--LEGDELRTDLKAVEAKIQ-ELGP 196
Query: 231 ELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 290
E I T A D L+ L + + I V+ AY + C V
Sbjct: 197 EHILCLHS-TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255
Query: 291 CVDSFSFNPHKWLFTTLDCCCLWVKDPSCL 320
+D+F + K + + + +
Sbjct: 256 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFI 285
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 49.3 bits (117), Expect = 2e-06
Identities = 28/210 (13%), Positives = 69/210 (32%), Gaps = 17/210 (8%)
Query: 111 SPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGR 170
S ++ N ++ + ++ + V+ T +L R + R
Sbjct: 111 SSLLNKITNSLVLDIIKLAGVHTV-----ANCFVVPMATGMSLTLCFLTLRHK------R 159
Query: 171 ENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+K +++ + K+ G + I + + ++V +++ ++
Sbjct: 160 PK-AKYIIWP-RIDQKSCFKSMITAGFEPVVIENV--LEGDELRTDLKAVEAKVQ-ELGP 214
Query: 231 ELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 290
+ I +T A D L+ L + + I V+ AY + C V
Sbjct: 215 DCILCIH-STTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273
Query: 291 CVDSFSFNPHKWLFTTLDCCCLWVKDPSCL 320
+D+F + K + + + S +
Sbjct: 274 RIDAFVQSLDKNFMVPVGGAIIAGFNDSFI 303
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 64/458 (13%), Positives = 130/458 (28%), Gaps = 157/458 (34%)
Query: 52 SPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISS 111
SPE+V +LQ + I P T +S + S+ + +L S L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----- 247
Query: 112 PAAVELENIVMD--WLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIG 169
+V+ + + +F S C+ LL T R + +
Sbjct: 248 --------LVLLNVQNAKAWN---AFNLS-----------CKILLTT----RFKQV---- 277
Query: 170 RENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLS---AESVLSQINL 226
+ +I + L+ +S+L + L
Sbjct: 278 ---------------------TDFLSAATTTHISLDHHSM----TLTPDEVKSLLLKY-L 311
Query: 227 DVEAELIPLFLCATVGTTAITAVDPL------KPLCDVAKQFGIWVHVDAAYAGSACICP 280
D + +P + +P + + D + W HV+ C
Sbjct: 312 DCRPQDLPREVL---------TTNPRRLSIIAESIRDGLATWDNWKHVN---------CD 353
Query: 281 EFRHFIDGVECVDSFSFNPHKWLFTTL-----DCCCLWVKDPSCLLSTL-----STNPQY 330
+ I+ ++ ++ +F L P+ LLS + ++
Sbjct: 354 KLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPS-----AHIPTILLSLIWFDVIKSDVMV 406
Query: 331 LKNE-----ATDQEPKEQEVGYKDWQITLC----------RRF-------RSLKLWVVIR 368
+ N+ +++PKE + + L R ++
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---- 462
Query: 369 NFGVANLRNFIRSHVG----------MAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSA 418
+ L + SH+G LF + D RF R+ S +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAW--NASGS 519
Query: 419 VMDKLRTKYKNGTYDQYRQF-SEEERTNEFNRELLESI 455
+++ L Y+ + + + E L+ +I
Sbjct: 520 ILNTL------QQLKFYKPYICDNDPKYE---RLVNAI 548
Score = 34.8 bits (79), Expect = 0.080
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 43/170 (25%)
Query: 337 DQEPKEQEVGYKDWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSD 396
D E E + YKD F + NF ++++ +S + + + ++ S
Sbjct: 8 DFETGEHQYQYKDILSVFEDAF--------VDNFDCKDVQDMPKS-ILSKEEIDHIIMSK 58
Query: 397 KRFEVAFPRNFSLVCF---RVTPSAVMDKLRTKYK---NGTYDQYRQFS------EEERT 444
R F + + V + LR YK + + RQ S E+R
Sbjct: 59 DAVSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 445 NEFN-------------------RELLESINVSGKVFMTHAIVG-GIYVL 474
+N R+ L + + V + ++G G +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWV 166
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 40.5 bits (94), Expect = 0.001
Identities = 34/207 (16%), Positives = 63/207 (30%), Gaps = 31/207 (14%)
Query: 111 SPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALL-CTLTAARDRVLKKIG 169
S +L++ + +P QG E +L L + + K
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIP-----------AHQGRGAENILFPVLLKYKQKEGKAKN 123
Query: 170 RENISKLVVYSSDQTHCAFQKA-AQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDV 228
IS + D T + + + I + +T + + I
Sbjct: 124 PVFIS---NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA-QH 179
Query: 229 EAELIPL-FLCATVGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF 285
A+ I T + V LK + ++AKQ GI+V +D+A + R
Sbjct: 180 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 239
Query: 286 -----------IDGVECVDSFSFNPHK 301
D + D+ + + K
Sbjct: 240 KYKNATIKEVIFDMYKYADALTMSAKK 266
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 39.3 bits (92), Expect = 0.002
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 194 IVGIDRK--NIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATV----GTTAIT 247
V +R NI + T Y ++ E+ I + + L L G
Sbjct: 107 YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN---- 162
Query: 248 AVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEC-VDSFSFNPHKWLFTT 306
+ +K + V ++ + + V+ AYA + E D + HK + +
Sbjct: 163 -LPDVKKIAKVCSEYDVPLLVNGAYA-----IGRMP--VSLKEIGADFIVGSGHKSMAAS 214
Query: 307 LDCCCLWVKD 316
+ +K+
Sbjct: 215 GPIGVMGMKE 224
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.008
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 31/127 (24%)
Query: 45 LPESAPY-SP---ESVETILQDVQEHIVPGITHWQSPNYFA---YFPATSS----VAGIV 93
LP ++P+ S + + I +D+ ++ V + + Y S ++G +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVS----F-NAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 94 GEMLSSGFNVVGLDWISSPAAVELE--NIV------MDWLGQMLDLPKSFLFSGNGGGVI 145
E + + + W + + +I+ LG + K G G VI
Sbjct: 476 SERIVDCIIRLPVKW---ETTTQFKATHILDFGPGGASGLGVLTHRNK----DGTGVRVI 528
Query: 146 QGTTCEA 152
T +
Sbjct: 529 VAGTLDI 535
Score = 33.1 bits (75), Expect = 0.29
Identities = 32/196 (16%), Positives = 55/196 (28%), Gaps = 52/196 (26%)
Query: 324 LSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRSLKLWVVIRNFGVANLRNFIRSHV 383
P+ + A D EP L +F L ++ S V
Sbjct: 38 NKILPEPTEGFAADDEPTT--------PAELVGKF--L---------------GYVSSLV 72
Query: 384 --GMAKLFERLV-TSDKRFEVAFPRNF---SLVCFRVTPSAVMDKLRTKYKNGTYDQYRQ 437
F++++ FE + +L ++ ++TK Y R
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA-KLLQENDTTLVKTKELIKNYITARI 131
Query: 438 FSEEERTNEFNRELLESINVSG--KVFMTHAIVGG-----IYV--LR--FAAGNSMTMES 486
++ + N L ++ G ++ AI GG Y LR + T
Sbjct: 132 MAKRPFDKKSNSALFRAVG-EGNAQLV---AIFGGQGNTDDYFEELRDLYQ-----TYHV 182
Query: 487 HVRAAWTVVQEHLEAF 502
V E L
Sbjct: 183 LVGDLIKFSAETLSEL 198
Score = 31.9 bits (72), Expect = 0.69
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 375 LRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLVCFRVTPSAVMDK 422
+ + I+ A+ L+ + E F + +++ + PS DK
Sbjct: 184 VGDLIKF---SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.069
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 28 DKYPVRSQVEPGYLKKRLPESAP 50
+K ++ +++ LK +SAP
Sbjct: 18 EKQALK-KLQ-ASLKLYADDSAP 38
Score = 31.8 bits (71), Expect = 0.23
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 37 EPGYLKKRLPESA--PYSPES 55
E LKK L +++ Y+ +S
Sbjct: 18 EKQALKK-L-QASLKLYADDS 36
Score = 29.1 bits (64), Expect = 2.2
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 20/44 (45%)
Query: 165 LKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTT 208
LKK+ + + L +Y+ D A + AIK T
Sbjct: 22 LKKL--Q--ASLKLYADDS-------APAL---------AIKAT 45
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 33.4 bits (77), Expect = 0.17
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 252 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVECVDSFSF 297
L+ + K+ G+++ +D A SA P D D F
Sbjct: 166 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 33.5 bits (76), Expect = 0.18
Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 27/210 (12%)
Query: 111 SPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCE-ALLCTLTAARDRVLKKIG 169
S + L V + G +P QG E + L R++
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-----------THQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 170 RENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVE 229
+ ++ + + + + K E + I +V
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIE-EVG 180
Query: 230 AELIPLF-LCATVGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI 286
+P T + V LK + +AK++ I V +D+A + R
Sbjct: 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240
Query: 287 DG-----------VECVDSFSFNPHKWLFT 305
+ D + + K
Sbjct: 241 YKDWTIEQITRETYKYADMLAMSAKKDAMV 270
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 33.3 bits (77), Expect = 0.19
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 17/67 (25%)
Query: 240 TVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVEC--VDSFS 296
T+G V L+ + + G V VD + A + +D + D +
Sbjct: 177 TLGG-----VTDLRAMTKLVHDVGALVVVDHSAAAP--------YRLLD-IRETDADVVT 222
Query: 297 FNPHKWL 303
N H W
Sbjct: 223 VNAHAWG 229
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 32.9 bits (76), Expect = 0.23
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 48 SAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLD 107
P I ++ + VP I F + + G+ +VVGLD
Sbjct: 229 IKPVM----NRIFSELAKENVPLI-------MFG-----VGASHLAGDWHDLPLDVVGLD 272
Query: 108 WISSPA 113
W
Sbjct: 273 WRLGID 278
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 32.6 bits (75), Expect = 0.26
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 252 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFR-HFIDGVECVDSFSF 297
++ + DV K + +H+D + +A + + VD+ SF
Sbjct: 162 IEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSF 208
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 32.5 bits (75), Expect = 0.32
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 48 SAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLD 107
S Y + V+ +L++ VP F + M +G + +GLD
Sbjct: 223 SLYYMHKIVDGLLRENDGRRVPVT----------LFT--KGGGQWLEAMAETGCDALGLD 270
Query: 108 WISSPA 113
W + A
Sbjct: 271 WTTDIA 276
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 32.2 bits (74), Expect = 0.36
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
PL L +++K+FG + VD +++
Sbjct: 204 PLAELVNISKEFGCALLVDESHS 226
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 31.8 bits (73), Expect = 0.46
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
LK +CD+A ++ V VD ++A
Sbjct: 193 DLKSICDLADKYNALVMVDDSHA 215
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 31.8 bits (73), Expect = 0.49
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
LK +CD+A ++ V VD ++A
Sbjct: 195 NLKGVCDLADKYDALVMVDDSHA 217
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 31.9 bits (73), Expect = 0.50
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 16/53 (30%)
Query: 219 SV-LSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDA 270
S+ L+Q+ LD+ +L A+ L+ + A+ G++V +D
Sbjct: 117 SLXLTQLGLDLSEDL---------------ALALLREVLREAEPRGVFVRLDM 154
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 31.8 bits (73), Expect = 0.60
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
PLK + VAK+ G V VD A++
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEAHS 234
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 31.4 bits (72), Expect = 0.64
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 48 SAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLD 107
S Y V + ++ VP I F + ++ ++G + VGLD
Sbjct: 233 SLDYIRRVVAQLKREHDGARVPAI----------AFT--KGGGLWLEDLAATGVDAVGLD 280
Query: 108 WISSPA 113
W +
Sbjct: 281 WTVNLG 286
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 31.4 bits (72), Expect = 0.67
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 31.4 bits (72), Expect = 0.75
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
L L +A +F V VD A++
Sbjct: 191 NLPELTSIANEFDAAVMVDDAHS 213
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 31.0 bits (71), Expect = 0.90
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 251 PLKPLCDVAKQFGIWVHVDAAYA 273
PL + V +Q W+ VD A+
Sbjct: 186 PLAEIQQVTQQHNGWLMVDDAHG 208
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 29.8 bits (67), Expect = 1.4
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 95 EMLSSGFNVVGLDWISSPAAVEL-----ENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTT 149
ML++GF+V D SP V L LD ++ V
Sbjct: 60 AMLAAGFDVDATD--GSPELAAEASRRLGRPVRTMLFHQLDAIDAY------DAVW---A 108
Query: 150 CEALLCTLTAARDRVLKKIGR 170
LL VLK I R
Sbjct: 109 HACLLHVPRDELADVLKLIWR 129
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 30.2 bits (69), Expect = 1.6
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 48 SAPYSPESVETILQDVQEH-IVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGL 106
PY ++ ++++ P I YF + + + + + +
Sbjct: 215 VYPYV----NYLISELKDFSDTPVI----------YFF--RGSSSFIDLAVDYRADALSV 258
Query: 107 DWISSPA 113
DW
Sbjct: 259 DWSVDIP 265
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 243 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 273
T A + L L + AK+ G + D+AYA
Sbjct: 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton
pumping; HET: DMU; 2.35A {Vigna radiata}
Length = 766
Score = 30.2 bits (68), Expect = 2.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 452 LESINVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAAWTVVQE 497
+ +++V IVG + F+A MTM+S AA +V+E
Sbjct: 565 ITTVDVLTPKVFIGLIVGAMLPYWFSA---MTMKSVGSAALKMVEE 607
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 29.7 bits (67), Expect = 2.5
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 21/103 (20%)
Query: 217 AESVLSQINLDVE------AELIPLFLCATVGTTAITAVD-------PLKPLCDVAKQFG 263
AE + + E +P + +T V+ ++ L ++ + G
Sbjct: 136 AEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECG 195
Query: 264 IWVHVDAAYAGSACICPEFRHFIDGVEC-VDSFSFNPHKWLFT 305
D A++ A +D + D +K+L
Sbjct: 196 ALAIWDLAHSAGAVP-------VDLHQAGADYAIGCTYKYLNG 231
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 420 MDKLRTKYKNGTYDQYRQFSEE-ERTNEFNRE 450
+ R K K + ++ SE+ E+ NR
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 29.4 bits (66), Expect = 3.1
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 435 YRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRFAAGNSMTMESHVRAAWTV 494
Y L+ +N+ + A++G F+ + + +AA +
Sbjct: 526 YMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAAITYYFSG---YLISAVTKAAMKM 582
Query: 495 VQE 497
V E
Sbjct: 583 VDE 585
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 29.1 bits (66), Expect = 3.2
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 243 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 273
T + D L+ + A + I + DAAY+
Sbjct: 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYS 206
>3ipj_A PTS system, iiabc component; iiabc component,PSI, structural
genomics, MCSG, structure initiative; 1.20A {Clostridium
difficile}
Length = 95
Score = 27.7 bits (62), Expect = 3.3
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 163 RVLKKIGRENISKLVVYSSDQTHCA 187
++K IG +NI + THCA
Sbjct: 12 ELIKIIGEDNIISI-------THCA 29
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 29.0 bits (66), Expect = 4.0
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 48 SAPYS---PESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVV 104
+ PY + V+ L++ VP I F + E+ +G+ VV
Sbjct: 233 ALPYIRDVAKQVKARLREAGLAPVPMI----------IFA--KDGHFALEELAQAGYEVV 280
Query: 105 GLDWISSPA 113
GLDW +P
Sbjct: 281 GLDWTVAPK 289
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 28.8 bits (65), Expect = 4.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 243 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 273
T A L L + A++ G + DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold,
PSI, protein structure initiative; 1.70A {Escherichia
coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Length = 215
Score = 28.5 bits (63), Expect = 4.2
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 62 DVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLS 98
D Q+ ++ + +W P Y+P S +V EM+S
Sbjct: 183 DSQQSLLNEMENW--P---TYYPYQLSSEEVVEEMMS 214
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 29.0 bits (66), Expect = 4.2
Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 23/95 (24%)
Query: 7 QEFRRQGHMFVDFMAEYYK----------NIDKYPVRSQVE-------PGYLKKRLPESA 49
R+ + Y +D + ++ E G ++ P
Sbjct: 163 TALTRE--GMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLT 220
Query: 50 PYSPESVETILQDVQEHI---VPGITHWQSPNYFA 81
P + ++ PG+ +Q F
Sbjct: 221 PAFGVEERPYEKARALYLVALFPGV-AYQEEARFP 254
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 28.9 bits (64), Expect = 4.2
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 34/245 (13%)
Query: 43 KRLPESAPYSPESVETILQDVQEH-----IVPGITHWQSPNYFAYFP-ATSSVAGIVGEM 96
E P+ +SVET+ ++ G + + Y T S + +
Sbjct: 2 NYPAE--PFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDK 59
Query: 97 LSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCT 156
+G + + S LE V + G +P QG E LL
Sbjct: 60 QWAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVP-----------THQGRGAENLLS- 107
Query: 157 LTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKA-AQIVGIDRKNIRAIKTTKSSSYGL 215
++ K G+ T +K A V I R + +
Sbjct: 108 ------QLAIKPGQYVAG---NMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDI 158
Query: 216 SAESVLSQINLDVEAELIPL-FLCATVGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAY 272
+ + I+ + AE I L TV V ++ + ++ + GI V DA
Sbjct: 159 DLKKLQKLID-EKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATR 217
Query: 273 AGSAC 277
Sbjct: 218 CVENA 222
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 28.7 bits (65), Expect = 4.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 243 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 273
T A+ + +A++ G+W+ D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 28.6 bits (65), Expect = 5.0
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 48 SAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLD 107
S PY + V+++ +P I +A S G++ + +G +VV LD
Sbjct: 229 SLPYLKQIVDSVKLTHPN--LPLI-------LYA-----SGSGGLLERLPLTGVDVVSLD 274
Query: 108 WISSPA 113
W A
Sbjct: 275 WTVDMA 280
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 28.7 bits (65), Expect = 5.5
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 30/98 (30%)
Query: 225 NLDVEA--ELIPLFLCATVGTTAITAVD------PLKPLCDVAKQFGIWVHVDAAYA-GS 275
NLD + + T T+A+ V L VA + G+ ++ DAA+A G
Sbjct: 125 NLDPDQVAAAV------TPRTSAVVGVHLWGRPCAADQLRKVADEHGLRLYFDAAHALGC 178
Query: 276 ACICPEFRHFIDGVEC-----VDSFSFNPHKWLFTTLD 308
A +DG + FSF+ K +
Sbjct: 179 A---------VDGRPAGSLGDAEVFSFHATK-AVNAFE 206
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 28.3 bits (64), Expect = 5.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 243 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 273
T +D + + +AKQ+ + V D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 28.2 bits (64), Expect = 6.5
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
Query: 108 WISSPAAVELENIVM 122
WISS V+LEN +M
Sbjct: 444 WISS---VDLENALM 455
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich
fold, jelly roll, sugar binding protein,
hydrolase-carbohydrate complex; HET: MES GOL; 1.80A
{Zobellia galactanivorans}
Length = 280
Score = 27.9 bits (62), Expect = 7.3
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 23/78 (29%)
Query: 50 PYSPESVETILQDVQEHI----------------VPGITH-WQSPNYFAYFPATSSVAGI 92
+ E + D+QE + + TH P Y +S
Sbjct: 139 KRTTE----L--DIQESVGQITNDADWMKYFDQTMNSNTHSRNIPEGCEYEKGSSKGKAE 192
Query: 93 VGEMLSSGFNVVGLDWIS 110
+G F+V G+ W S
Sbjct: 193 LGGKAYEDFHVYGVWWKS 210
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 27.9 bits (63), Expect = 7.7
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 243 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 273
T + + K + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 27.9 bits (62), Expect = 9.7
Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 26/88 (29%)
Query: 3 QAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRL----------------P 46
Q Y Q+F++ G +Y+N+++ + L +++ P
Sbjct: 448 QFYVQQFKKSGF---RGPLNWYRNMERNW---KWACKSLGRKILIPALMVTAEKDFVLVP 501
Query: 47 ESAPYSPESVETILQDVQEHIVPGITHW 74
+ + + + + ++ + HW
Sbjct: 502 QMSQHMEDWIP----HLKRGHIEDCGHW 525
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 27.7 bits (62), Expect = 9.7
Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 19/88 (21%)
Query: 3 QAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPG----------------YLKKRLP 46
YA +F + G YY+ + + G
Sbjct: 224 DYYANKFEQTG---FTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGA 280
Query: 47 ESAPYSPESVETILQDVQEHIVPGITHW 74
+ ++ + + + ++ G H+
Sbjct: 281 KEYIHNGGFKKDVPLLEEVVVLEGAAHF 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,772,763
Number of extensions: 472377
Number of successful extensions: 1202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 76
Length of query: 502
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 404
Effective length of database: 3,965,535
Effective search space: 1602076140
Effective search space used: 1602076140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)