RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037144
(502 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 389 bits (1001), Expect = e-132
Identities = 201/510 (39%), Positives = 280/510 (54%), Gaps = 48/510 (9%)
Query: 1 MDQAYAQEFRRQGHMFVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETIL 60
M+ A +FRR+G VD+MA+Y + I+ V V+PGYL+ +P +AP P++ E IL
Sbjct: 1 MN---ASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDIL 57
Query: 61 QDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENI 120
QDV++ I+PG+THW SP +FAYFP SS ++ +ML +G W +SPA ELE +
Sbjct: 58 QDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETV 117
Query: 121 VMDWLGQMLDLPKSFLFSGNG--GGVIQGTTCEALLCTLTAARDRVLKKIGREN------ 172
+MDWLG+ML LP++FL G GGVIQG+ EA L L AAR +V++++ +
Sbjct: 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQG 177
Query: 173 --ISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+ KLV Y+SDQ H + ++A I G+ K I + + A ++ + D A
Sbjct: 178 AVLEKLVAYASDQAHSSVERAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAA 232
Query: 231 ELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE 290
LIP F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE
Sbjct: 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 291 CVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDW 350
DSF+FNPHKWL DC +WVK + L +P YLK+ Y+ W
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS---GLITDYRHW 349
Query: 351 QITLCRRFRSLKLWVVIRNFGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNFSLV 410
Q+ L RRFRSLK+W V R +GV L+ +IR HV ++ FE V D RFEV LV
Sbjct: 350 QLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLV 409
Query: 411 CFRVTPSAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGG 470
CFR+ S + N LLE IN + K+ + + G
Sbjct: 410 CFRLKGS---------------------------DGLNEALLERINSARKIHLVPCRLRG 442
Query: 471 IYVLRFAAGNSMTMESHVRAAWTVVQEHLE 500
+VLRFA + HVR AW ++
Sbjct: 443 QFVLRFAICSRKVESGHVRLAWEHIRGLAA 472
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 170 bits (430), Expect = 4e-48
Identities = 69/503 (13%), Positives = 133/503 (26%), Gaps = 77/503 (15%)
Query: 16 FVDFMAEYYKNIDKYPVRSQVEPGYLKKRLPESAPYSPESVETILQDVQEHIVPGITHWQ 75
D +E + + KR P + I+ D E + G
Sbjct: 4 VTDLRSELLDSRFGAKS---ISTIAESKRFPLHEM-RDDVAFQIIND--ELYLDGNARQ- 56
Query: 76 SPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSF 135
A F + V +++ N +D P + ++ ++ + + P
Sbjct: 57 ---NLATF-CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAP- 111
Query: 136 LFSGNGGGVIQGTTCEALLCTLTAARDRVLKKI-GRENISKLVVYSSDQTHCAFQKAAQI 194
+G G + EA + A + R K++ + + K A+
Sbjct: 112 -KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY 170
Query: 195 VGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKP 254
++ + I + + ++ + + + + T G T + +P
Sbjct: 171 WDVELREIPMRPGQ----LFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQP 220
Query: 255 LCDV------AKQFGIWVHVDAAYAGS-ACICPEFRHFIDGVECVDSFSFNPHKWLFTTL 307
L D I +H+DAA G A + + V S S + HK+ L
Sbjct: 221 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL 280
Query: 308 DCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRSLKLWVVI 367
C + +D L L N YL + I R +
Sbjct: 281 GCGWVIWRDEEALPQELVFNVDYL------------GGQIGTFAINFSRPAGQVIAQYYE 328
Query: 368 RN-FGVANLRNFIRSHVGMAKLFERLVTSDKRFEVAFPRNF----SLVCFRVTPSAVMDK 422
G + +A + +E VCF++
Sbjct: 329 FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE---- 384
Query: 423 LRTKYKNGTYDQYRQFSEEERTNEFNRELLES-INVSGKVFMTHAIVGGIYVLRFAAGNS 481
+ + L V A I V+R
Sbjct: 385 ----------------DPGYTLYDLSERLRLRGWQVPAFTLGGEAT--DIVVMRIMCRRG 426
Query: 482 MTME------SHVRAAWTVVQEH 498
M+ +A+ + +H
Sbjct: 427 FEMDFAELLLEDYKASLKYLSDH 449
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 111 bits (278), Expect = 3e-27
Identities = 38/337 (11%), Positives = 90/337 (26%), Gaps = 40/337 (11%)
Query: 42 KKRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGF 101
+ + PE + ++E L ++ S N+ + +++
Sbjct: 16 QGKCPED-GWDESTLELFLHELAVM--------DSNNFLGNCGVGEREGRVASALVARRH 66
Query: 102 NVVG-------------LDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGT 148
S ++ N ++ + ++ + V+
Sbjct: 67 YRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSV-----ASCFVVPMA 121
Query: 149 TCEALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTT 208
T +L R + + + K+ G + I +
Sbjct: 122 TGMSLTLCFLTLRHK--------RPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEG 173
Query: 209 KSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHV 268
L ++V ++I ++ L +T A D L+ L + + I V
Sbjct: 174 DELRTDL--KAVEAKIQELGPEHIL--CLHSTTACFAPRVPDRLEELAVICANYDIPHVV 229
Query: 269 DAAYAGSACICPEFRHFIDGVECVDSFSFNPHKWLFTTLDCCCLWVKDPSCLLSTLSTNP 328
+ AY + C V +D+F + K + + + + P
Sbjct: 230 NNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP 289
Query: 329 QY-LKNEATDQEPKEQEVGYKDWQITLCRRFRSLKLW 364
+ + D +G ++ L R
Sbjct: 290 GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYL 326
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 103 bits (257), Expect = 2e-24
Identities = 56/506 (11%), Positives = 139/506 (27%), Gaps = 100/506 (19%)
Query: 7 QEFRRQGHMFVDFMAEYYKNIDKYPV--RSQVEPGYLKKRLPESAPYSPESVETILQDVQ 64
+ ++G + ++ + +++ + + ++ +K L + + ++ +
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 65 ---EHIVPGITHWQSPNYFAYFPATSSVAGIVGEMLSSGFNVVGLDWISSPAAVELENIV 121
S + + + + + L N +
Sbjct: 72 REARTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASG--------ASIMYALTNKI 118
Query: 122 MDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGRENISKLVVYSS 181
++ + L L + + G ++ L+AAR + + V
Sbjct: 119 LESFFKQLGLNVHAIATPISTG-------MSISLCLSAARKKYGSNV---------VIYP 162
Query: 182 DQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFLCATV 241
+H + KA VG++ + + + + E + + I ++E P + +T+
Sbjct: 163 YASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRP-CVLSTL 219
Query: 242 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVECVDSFSFNPHK 301
D + + + + + I ++ AYA E VD+ + K
Sbjct: 220 TFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDK 278
Query: 302 WLFTTLDCCCLWVKDPSCLLSTLSTNPQYLKNEATDQEPKEQEVGYKDWQITLCRRFRSL 361
L T + ++ D + + P +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRA------------------------SATPVV 314
Query: 362 KLWVVIRNFGVANLRNFIRSHVGMAKLFERL---VTSDKRFEVAFPRNFSLVCFRVT--P 416
V + + G N +++ KL + L ++ + + C V P
Sbjct: 315 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDP 374
Query: 417 SAVMDKLRTKYKNGTYDQYRQFSEEERTNEFNRELLESINVSGKVFMTHAIVGGIYVLRF 476
+ KL V+G + G L
Sbjct: 375 VEIAAKLYNL-----------------------------RVTGPRGIKKTDHFGNCYLGT 405
Query: 477 AAGNSMTMESHVRAAWTVVQEHLEAF 502
+ + + AA V E +
Sbjct: 406 YTHDYIV----MNAAIGVRTEDIVNS 427
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 48.8 bits (115), Expect = 9e-07
Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 37/297 (12%)
Query: 43 KRLPESAPYSPESVETILQDVQEHIVPGITHWQSPNYFAYFPA--------TSSVAGIVG 94
K LPE P+ +E + + + + I N F + T S G V
Sbjct: 1 KHLPE--PFRIRVIEPVKRTTRAYREEAIIK-SGMNPFL-LDSEDVFIDLLTDSGTGAVT 56
Query: 95 EMLSSGFNVVGLDWISSPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCE-AL 153
+ + + + S + L V + G +P QG E
Sbjct: 57 QSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQYTIP-----------THQGRGAEQIY 105
Query: 154 LCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSY 213
+ L R++ + ++ + + + + K
Sbjct: 106 IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKG 165
Query: 214 GLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDP--LKPLCDVAKQFGIWVHVDAA 271
E + I + + T + V LK + +AK++ I V +D+A
Sbjct: 166 NFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSA 225
Query: 272 YAGSACICPEFRHF-----------IDGVECVDSFSFNPHKWLFTTLDCCCLWVKDP 317
+ R + + D + + K + D
Sbjct: 226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDS 282
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 37.1 bits (85), Expect = 0.005
Identities = 27/219 (12%), Positives = 57/219 (26%), Gaps = 33/219 (15%)
Query: 111 SPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGR 170
S LE V + G K + QG E LL ++ K G+
Sbjct: 74 SENFYHLEKTVKELFGF-----KHIVP------THQGRGAENLLS-------QLAIKPGQ 115
Query: 171 ENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+ ++ + D + + + + I
Sbjct: 116 YVAGNMYFTTTRFHQEKNGATFVDIVRDEAHD--ASLNLPFKGDIDLNKLATLIKEKGAE 173
Query: 231 E--LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAA-YAGSACICPEFRHFID 287
I L + + ++ ++ + ++A +GI + DA +A E +
Sbjct: 174 NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYE 233
Query: 288 GV----------ECVDSFSFNPHKWLFTTLDCCCLWVKD 316
V D + + K + +
Sbjct: 234 NVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE 272
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 32.1 bits (72), Expect = 0.14
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 12/125 (9%)
Query: 178 VYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEAELIPLFL 237
V ++ A + G + T + + L+ + + + A +I
Sbjct: 113 VLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPC 169
Query: 238 CATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI------DGVEC 291
T A+ L+ + D + + V D Y +
Sbjct: 170 NPT---GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTIT 226
Query: 292 VDSFS 296
V+ FS
Sbjct: 227 VNGFS 231
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 32.2 bits (72), Expect = 0.14
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 14/169 (8%)
Query: 111 SPAAVELENIVMDWLGQMLDLPKSFLFSGNGGGVIQGTTCEALLCTLTAARDRVLKKIGR 170
S +L++ + QG E +L + + K
Sbjct: 74 SRNYYDLKDKAKELFN----YDYIIPAH-------QGRGAENILFPVLLKYKQKEGKAKN 122
Query: 171 ENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTTKSSSYGLSAESVLSQINLDVEA 230
+ + H + I + +T + + I
Sbjct: 123 PVFISNFHFDTTAAHVELNGCK-AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 231 ELIPLFLCATVGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSAC 277
++ + T + V LK + ++AKQ GI+V +D+A
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA 230
>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
meningitidis [TaxId: 487]}
Length = 116
Score = 28.2 bits (63), Expect = 0.99
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 331 LKNEATDQEPKEQ-----EVGYKDWQITLCRRFRSLKLWVV------IRNFGVANLRNFI 379
LK+ K+Q + Y + + +RF+ L L + + + A + +
Sbjct: 9 LKSAVQTMSKKKQTEMIADHIYGKY--DVFKRFKPLALGIDQDLIAALPQYDAALIARVL 66
Query: 380 RSHVGMAKLFERLVTSDKRFEV 401
+H + + L KRF++
Sbjct: 67 ANHCRRPRYLKALARGGKRFDL 88
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 28.8 bits (63), Expect = 1.5
Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 34/205 (16%)
Query: 232 LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYA----GSACICPEFRHFID 287
++ L C T A D + ++ K + +D AY G R
Sbjct: 175 IVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS 234
Query: 288 GVECVDSFSFNPHKWLFTTLDCCCLWVKDP--------------SCLLSTLSTNPQYLKN 333
+ + L V + + S +
Sbjct: 235 AGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQV 294
Query: 334 EATDQEPKEQEVGYKDWQITLCRRFRSLKLWVV--IRNFGVANLRNFIRSHVGM------ 385
A + + + + R +++ +V + +++ + GM
Sbjct: 295 VAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL 354
Query: 386 -AKLFERL-------VTSDKRFEVA 402
A +RL + + R VA
Sbjct: 355 SAAQVDRLREEFGVYLIASGRMCVA 379
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 27.7 bits (60), Expect = 2.8
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 233 IPL-FLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEC 291
+PL T+G +TA L +C V G V V AA + +
Sbjct: 1 LPLSLALGTIGMPGLTAYFGLLEVCGVKG--GETVLVSAAAGAVGSVVGQIAKLKGCKVV 58
Query: 292 VDSFSFNPHKWLFTTLDCCCLWVKDPSC 319
+ S +L K +
Sbjct: 59 GAAGSDEKIAYLKQIGFDAAFNYKTVNS 86
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 27.3 bits (59), Expect = 5.7
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 232 LIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSA----CICPEFRHFID 287
++ C T ++ + L ++ + G D AY G A R F
Sbjct: 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA 233
Query: 288 GVECVDSFSFNPHKWLFTTLDCCC 311
+ + S +
Sbjct: 234 MHKELIVASSYSKNFGLYNERVGA 257
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 233
Score = 26.4 bits (57), Expect = 6.6
Identities = 12/152 (7%), Positives = 34/152 (22%), Gaps = 6/152 (3%)
Query: 149 TCEALLCTLTAARDRVLKKIGRENISKLVVYSSDQTHCAFQKAAQIVGIDRKNIRAIKTT 208
+ + R LKK+ RE + + H + + + + +
Sbjct: 30 GIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVIS 89
Query: 209 KSSSYGLSAESVLSQINLDVEAELIPLFLCATVGTTAITAVDPLKPLCDVAKQFGIWVHV 268
++ ++ + + + + ++ A I
Sbjct: 90 EAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIE--- 146
Query: 269 DAAYAGSACICPEFRHFIDGVECVDSFSFNPH 300
A + F P+
Sbjct: 147 ---PGERAKKLKTLEQRVYAESQTQLFIETPY 175
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 26.6 bits (57), Expect = 9.8
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 175 KLVVYSSDQTHCAFQKA-AQIVGIDRKNIRAIKTTKSSSYG 214
K ++S A VG++ + + ++G
Sbjct: 72 KCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFG 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,905,034
Number of extensions: 90358
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 18
Length of query: 502
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,185,626
Effective search space: 489663538
Effective search space used: 489663538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)