BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037145
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K24|A Chain A, Crystal Structure Of The Opca Outer Membrane
           AdhesinINVASIN FROM Neisseria Meningitidis
 pdb|2VDF|A Chain A, Structure Of The Opca Adhesion From Neisseria Meningitidis
           Determined By Crystallization From The Cubic Mesophase
          Length = 253

 Score = 27.3 bits (59), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 75  GHLGDLELAGATLANSWACVTGFDFTKT------NRTWEGLSFESFSVFLTNLKVALSSA 128
           G   +++L      N     TG+ +T+T       R   GL FES    +   K  L S+
Sbjct: 74  GKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSS 133

Query: 129 AMVWVKILQIDNLEQRG 145
              W+  +  D L Q G
Sbjct: 134 RQSWLAKVHADLLSQLG 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,069,239
Number of Sequences: 62578
Number of extensions: 129755
Number of successful extensions: 174
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)