BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037145
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5
PE=2 SV=1
Length = 477
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 4/77 (5%)
Query: 27 GEEER----RWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLEL 82
GE+ER R ++V+DVEEAK Q+++SLPMI+ NV YY IP+ SVMFA HLG LEL
Sbjct: 17 GEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLEL 76
Query: 83 AGATLANSWACVTGFDF 99
AGATLANSWA V+GF F
Sbjct: 77 AGATLANSWATVSGFAF 93
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 24 YNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLG----- 78
Y + R+C+ + + V+FS +V N++ A LV V G +G
Sbjct: 173 YGFLQNILRFCQTQSIIAPL------VIFSFVPLVINIAT-AYVLVYVAGLGFIGAPIAT 225
Query: 79 --DLELAGATLANSWACVTGFDFTKTNRTWEGLSFESFSVFLTNLKVALSSAAMV 131
L +A +L C F TW G S ESF + NL ++L SAAMV
Sbjct: 226 SISLWIAFLSLGTYVMCSEKF-----KETWTGFSLESFRYIVINLTLSLPSAAMV 275
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5
PE=2 SV=1
Length = 469
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 38 KEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
++++DVEEAK Q+++SLPMI N+ YY IPL SVMFA LG LELAGATLANSWA VTGF
Sbjct: 24 QKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAGATLANSWATVTGF 83
Query: 98 DF 99
F
Sbjct: 84 AF 85
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 24 YNLGEEERRWCRKWKEVLDVEEAKNQVLFS-LPMIVANVSYYAIPLVSVMFAGHLGDLEL 82
Y + R+C+ V + VLFS LP+++ + YA+ HL L
Sbjct: 165 YGFLQNILRFCQTQCIVTPL------VLFSFLPLVINIGTTYALV--------HLAGLGF 210
Query: 83 AGATLANS---WACVTGFDFT-----KTNRTWEGLSFESFSVFLTNLKVALSSAAMV 131
GA +A S W F K TW G S ESF + NL +++ SAAMV
Sbjct: 211 IGAPIATSISLWIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMV 267
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4
PE=3 SV=2
Length = 477
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 13 PLLGTGDNINNYNLGEEERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVM 72
PLL D + NL W E KN + PM VS Y +P++SVM
Sbjct: 4 PLLLGDDQLITRNLKSTPTWWMNF------TAELKNVSSMAAPMATVTVSQYLLPVISVM 57
Query: 73 FAGHLGDLELAGATLANSWACVTGF 97
AGH G+L+L+G TLA ++A V+GF
Sbjct: 58 VAGHCGELQLSGVTLATAFANVSGF 82
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3
PE=2 SV=1
Length = 476
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 28 EEERRWCRK-WKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGAT 86
+E+ C+ W+ E K + PM ++ Y +P++SVM AGH+G+LELAG
Sbjct: 9 DEQLVSCKSTWQSGQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVA 68
Query: 87 LANSWACVTGFD 98
LA S+ V+GF
Sbjct: 69 LATSFTNVSGFS 80
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1
PE=2 SV=1
Length = 476
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDF----- 99
E K + PM ++ Y +P++SVM AGH G+L+L+G LANS+ VTGF
Sbjct: 27 ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86
Query: 100 ---------TKTNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDP 148
+ +E + ++S +N+ + +++W+ I +I L G DP
Sbjct: 87 GALETLCGQAYGAKQYEKIGTYAYSAIASNIPICF-LISILWLYIEKI--LISLGQDP 141
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5
PE=2 SV=1
Length = 483
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFD 98
E KN +LPM V+ Y +P++SVM AGH +L+L+G LA S+ V+GF
Sbjct: 30 ELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFS 83
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2
PE=3 SV=2
Length = 476
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 28 EEERRWCRK-WKE-VLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGA 85
+E+ C+ WK L+VE K L ++PM ++ Y +P++SVM AGH G+L+L+G
Sbjct: 9 DEQIVPCKATWKSGQLNVELKKVSRL-AVPMATVTIAQYLLPVISVMVAGHNGELQLSGV 67
Query: 86 TLANSWACVTGFD 98
LA S+ V+GF
Sbjct: 68 ALATSFTNVSGFS 80
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1
PE=3 SV=1
Length = 476
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 24 YNLGEEERRWCR-KWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLEL 82
+ L +E C+ WK E K + PM ++ Y +P++SVM AGH G+L+L
Sbjct: 5 FLLQDEHLVPCKDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQL 64
Query: 83 AGATLANSWACVTGFD 98
+G LA S+ V+GF
Sbjct: 65 SGVALATSFTNVSGFS 80
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2
SV=1
Length = 507
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 36 KWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLAN 89
+W L V E+K S IV +V Y + V+VMF GHLG L+LAGA++A
Sbjct: 42 RWWLKLAVWESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIAT 95
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus
GN=Slc47a2 PE=1 SV=1
Length = 573
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
EA V + P+ +A + + I +VS +F GHLG +EL TLA S VTG
Sbjct: 43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTG 94
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus
GN=Slc47a1 PE=1 SV=2
Length = 567
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 29 EERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLA 88
ERR R +EE + ++ + P +A + + I +S +F GHLG LEL TLA
Sbjct: 18 SERRGLRCLLLPGFLEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLA 77
Query: 89 NSWACVTGFD 98
+ VTG
Sbjct: 78 IAVINVTGIS 87
>sp|Q5R7E4|S47A2_PONAB Multidrug and toxin extrusion protein 2 OS=Pongo abelii
GN=SLC47A2 PE=2 SV=1
Length = 581
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 51 LFSL--PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
LF+L P+ + V + I +VS +F GHLG +ELA TLA ++ V G
Sbjct: 34 LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCG 81
>sp|Q86VL8|S47A2_HUMAN Multidrug and toxin extrusion protein 2 OS=Homo sapiens
GN=SLC47A2 PE=1 SV=1
Length = 602
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 51 LFSL--PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
LF+L P+ + V + I +VS +F GHLG +ELA TLA ++ V G
Sbjct: 34 LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCG 81
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1
PE=2 SV=1
Length = 590
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 34 CRKWKEVLDVEEAKNQVL----FSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLAN 89
CRK L K +++ + P+ ++ + + I VS +F GHLG ELAG LA
Sbjct: 37 CRKKLRSLLPVNYKTEIVELLKLAGPVFISQLMIFLISFVSTVFCGHLGKTELAGVALAI 96
Query: 90 SWACVTGFDF 99
+ VTG
Sbjct: 97 AVINVTGISI 106
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus
GN=Slc47a1 PE=1 SV=1
Length = 566
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFD 98
EE + ++ + P +A + + I +S +F GHLG LEL TLA + VTG
Sbjct: 32 EELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGIS 86
>sp|A7KAU2|S47A1_RABIT Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus
GN=SLC47A1 PE=2 SV=1
Length = 568
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 29 EERRWCRKWKEVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLA 88
E R W R EE + ++ + P +A + + I VS +F GHL LEL TLA
Sbjct: 17 ERRHWLRCLVLSDFREELRALLVLACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLA 76
Query: 89 ----NSWACVTGFDFTKTNRT 105
N GF + T
Sbjct: 77 IAVINVMGVSVGFGLSSACDT 97
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii
GN=SLC47A1 PE=2 SV=1
Length = 570
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
EE + ++ + P + + + I +S +F GHLG LEL TLA + VTG
Sbjct: 33 EELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTG 85
>sp|Q7N1G0|NORM_PHOLL Probable multidrug resistance protein NorM OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=norM PE=3
SV=1
Length = 453
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
E K + FS P+IV+ ++ A+ V ++ +GH +LA TL +S
Sbjct: 8 RELKQLLFFSFPIIVSQIARTAMSFVDIVMSGHYATADLAAVTLGSS 54
>sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens
GN=SLC47A1 PE=1 SV=1
Length = 570
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
EE + ++ + P + + + I +S +F GHLG LEL TLA + VTG
Sbjct: 33 EELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTG 85
>sp|A7KAU3|S47A2_RABIT Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus
GN=SLC47A2 PE=1 SV=1
Length = 601
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 3 GNRSSDNHTKPLLGTGDNINNYNLGEEERRWCRKWKEVLDV---EEAKNQVLFSLPMIVA 59
G R+ +P G G + + ++ C +++L +EA+ + S P+ +
Sbjct: 14 GRRAPGCTGRPAFGLGMDSQQDVVNLDQGGCCPALRKLLPRGFWDEARALFVLSGPLFLF 73
Query: 60 NVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
V + +V +F GHLG +ELA TL ++ V G
Sbjct: 74 QVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCG 110
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1
Length = 539
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 52 FSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
F+ P+++ ++ Y + +V GHLG ELA A+L+N A +T F
Sbjct: 103 FATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAF 148
>sp|Q05497|YD338_YEAST Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR338C PE=1 SV=1
Length = 695
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT 95
EA+ +S P+I + P+V + GHLG ELA +LA+ + +T
Sbjct: 228 EARVLASYSFPLIFTFLLEQIFPMVCSLTVGHLGKNELAAVSLASMTSNIT 278
>sp|P38767|ERC1_YEAST Ethionine resistance-conferring protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ERC1 PE=1
SV=1
Length = 581
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 53 SLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGF 97
+LP+I + ++ L S+ HLG EL G TL + A +TG
Sbjct: 172 ALPLIFTFILQNSLSLASIFSVSHLGTKELGGVTLGSMTANITGL 216
>sp|Q65JP6|TRMD_BACLD tRNA (guanine-N(1)-)-methyltransferase OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=trmD PE=3 SV=1
Length = 243
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 5 RSSDNHTKPLLGTGDNINNYNLGEEERRWCRKWK 38
R ++ + L D + NY L EEER+W +WK
Sbjct: 208 RRKESLRRTFLRRPDLLENYPLSEEERKWISEWK 241
>sp|Q8G2I1|NORM_BRUSU Probable multidrug resistance protein NorM OS=Brucella suis
biovar 1 (strain 1330) GN=norM PE=3 SV=1
Length = 471
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSW 91
P+I N+S A+ V+F G LG LA A LA S+
Sbjct: 33 PLIFTNLSQAALTATDVIFIGRLGADTLASALLATSF 69
>sp|Q8YFD7|NORM_BRUME Probable multidrug resistance protein NorM OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
GN=norM PE=3 SV=1
Length = 471
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSW 91
P+I N+S A+ V+F G LG LA A LA S+
Sbjct: 33 PLIFTNLSQAALTATDVIFIGRLGADTLASALLATSF 69
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis
GN=slc47a1 PE=2 SV=1
Length = 574
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 64 YAIPLVSVMFAGHLGDLELAGATLANSWACVTG 96
+ I +VS +F GHLG +EL +LA + +TG
Sbjct: 67 FLISIVSSIFCGHLGKVELDAVSLAITIINITG 99
>sp|Q7NXN3|NORM_CHRVO Probable multidrug resistance protein NorM OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=norM PE=3 SV=1
Length = 465
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
+ EA+ +LPM+VA ++ A V + AG +G +LA +L S
Sbjct: 14 LAEARQIAGLALPMMVAQIAQVATSFVDTVMAGRVGTDDLAAVSLGAS 61
>sp|Q8P4E6|NORM_XANCP Probable multidrug resistance protein NorM OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB
528 / LMG 568) GN=norM PE=3 SV=1
Length = 458
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
E + L +LP+++ +VS I V + AGH G LA T+ S
Sbjct: 16 AEVRTTGLLALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTS 62
>sp|B2VJB6|SYR_ERWT9 Arginine--tRNA ligase OS=Erwinia tasmaniensis (strain DSM 17950 /
Et1/99) GN=argS PE=3 SV=1
Length = 576
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 33 WCRK-WKEVLDVEEAKNQVLFS-LPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
+CRK WK+++DV +NQ+++ + + + L + M G + DL+ G + +
Sbjct: 223 YCRKMWKQLVDVTMTQNQLIYDRMNVTLTRDDVMGESLYNDMLPGIVADLKAKGLAVESE 282
Query: 91 WACVTGFD 98
A V D
Sbjct: 283 GATVVFLD 290
>sp|Q8PG07|NORM_XANAC Probable multidrug resistance protein NorM OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=norM PE=3 SV=1
Length = 458
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANS 90
E + L +LP+++ +VS I V + AGH G LA T+ S
Sbjct: 16 SEVRTTGLLALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTS 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,512,848
Number of Sequences: 539616
Number of extensions: 2108622
Number of successful extensions: 4221
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4179
Number of HSP's gapped (non-prelim): 44
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)