Query 037145
Match_columns 155
No_of_seqs 114 out of 1098
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 99.6 5E-15 1.1E-19 129.6 13.5 107 42-152 12-133 (455)
2 PRK10367 DNA-damage-inducible 99.5 9.6E-13 2.1E-17 114.5 13.0 106 43-152 5-126 (441)
3 PRK10189 MATE family multidrug 99.4 2.4E-12 5.2E-17 113.2 13.8 106 43-152 25-147 (478)
4 PRK00187 multidrug efflux prot 99.4 3.8E-12 8.3E-17 111.1 13.6 107 42-153 5-126 (464)
5 KOG1347 Uncharacterized membra 99.3 7.5E-12 1.6E-16 110.7 11.0 105 43-152 24-144 (473)
6 PRK09575 vmrA multidrug efflux 99.3 4.2E-11 9.2E-16 104.0 13.5 104 45-152 10-129 (453)
7 PRK01766 multidrug efflux prot 99.3 5.3E-11 1.1E-15 102.8 13.7 110 39-152 4-128 (456)
8 PRK00187 multidrug efflux prot 99.0 6.6E-09 1.4E-13 90.8 13.0 100 42-145 231-345 (464)
9 PRK01766 multidrug efflux prot 98.9 1.5E-08 3.2E-13 87.6 12.6 107 42-152 234-355 (456)
10 PF01554 MatE: MatE; InterPro 98.8 7.4E-09 1.6E-13 76.7 5.2 94 55-152 1-109 (162)
11 TIGR00797 matE putative efflux 98.7 5.8E-07 1.3E-11 74.0 12.6 107 42-152 211-332 (342)
12 COG0534 NorM Na+-driven multid 98.5 1.4E-06 3.1E-11 76.5 12.4 108 41-152 235-357 (455)
13 PRK10367 DNA-damage-inducible 98.5 3.1E-06 6.6E-11 73.8 12.9 105 44-152 229-348 (441)
14 PRK10189 MATE family multidrug 98.5 3.5E-06 7.6E-11 74.3 12.9 107 42-152 254-375 (478)
15 TIGR00797 matE putative efflux 98.5 2.2E-06 4.9E-11 70.5 11.0 93 55-151 1-108 (342)
16 PRK09575 vmrA multidrug efflux 98.4 5.9E-06 1.3E-10 71.9 12.7 107 42-152 229-352 (453)
17 TIGR01695 mviN integral membra 98.0 0.00013 2.9E-09 63.2 12.8 100 43-146 219-334 (502)
18 PRK15099 O-antigen translocase 97.9 0.00042 9.1E-09 59.2 13.4 103 42-148 210-326 (416)
19 TIGR02900 spore_V_B stage V sp 97.8 0.00024 5.1E-09 61.3 10.7 96 51-150 3-115 (488)
20 TIGR01695 mviN integral membra 97.6 0.00089 1.9E-08 58.1 11.4 99 49-150 2-119 (502)
21 TIGR02900 spore_V_B stage V sp 97.5 0.0017 3.7E-08 56.0 11.6 103 43-149 221-349 (488)
22 PF03023 MVIN: MviN-like prote 97.3 0.0067 1.5E-07 53.2 12.9 98 44-143 195-308 (451)
23 PRK10459 colanic acid exporter 97.1 0.0088 1.9E-07 52.1 11.3 100 43-146 203-318 (492)
24 COG2244 RfbX Membrane protein 96.6 0.022 4.7E-07 49.3 10.0 101 43-147 209-326 (480)
25 COG0728 MviN Uncharacterized m 96.2 0.091 2E-06 47.6 11.8 95 44-140 229-339 (518)
26 PRK15099 O-antigen translocase 95.8 0.26 5.6E-06 42.1 12.4 90 56-149 10-114 (416)
27 PF01943 Polysacc_synt: Polysa 95.0 0.11 2.3E-06 40.5 7.1 52 43-94 201-253 (273)
28 KOG1347 Uncharacterized membra 93.7 1.2 2.6E-05 39.8 11.4 106 43-152 243-365 (473)
29 PF13440 Polysacc_synt_3: Poly 89.6 1.7 3.7E-05 33.5 7.0 47 48-94 184-231 (251)
30 PF07260 ANKH: Progressive ank 85.5 17 0.00036 31.5 10.9 51 45-95 9-62 (345)
31 PRK10459 colanic acid exporter 74.1 32 0.0007 29.8 9.4 39 56-94 14-53 (492)
32 PF04172 LrgB: LrgB-like famil 73.6 46 0.001 26.8 10.7 95 43-152 67-166 (215)
33 PRK04288 antiholin-like protei 63.9 81 0.0017 25.8 10.5 93 44-151 84-181 (232)
34 PRK10711 hypothetical protein; 61.2 90 0.002 25.5 10.5 93 44-151 79-176 (231)
35 TIGR00659 conserved hypothetic 59.1 98 0.0021 25.2 10.7 93 44-152 78-176 (226)
36 TIGR01109 Na_pump_decarbB sodi 49.9 90 0.002 27.1 7.3 31 47-77 194-224 (354)
37 PRK15477 oxaloacetate decarbox 47.6 1.1E+02 0.0024 27.2 7.6 32 46-77 264-295 (433)
38 PRK15476 oxaloacetate decarbox 47.5 1.1E+02 0.0024 27.2 7.6 32 46-77 264-295 (433)
39 PRK15475 oxaloacetate decarbox 47.1 1.1E+02 0.0024 27.2 7.6 33 45-77 263-295 (433)
40 COG1883 OadB Na+-transporting 45.3 1.3E+02 0.0029 25.9 7.6 67 45-112 207-280 (375)
41 PF10507 DUF2453: Protein of u 44.9 1.1E+02 0.0025 22.2 6.2 32 68-99 24-55 (111)
42 PF03977 OAD_beta: Na+-transpo 39.2 1.7E+02 0.0038 25.5 7.5 32 46-77 193-224 (360)
43 TIGR03136 malonate_biotin Na+- 37.5 1.5E+02 0.0032 26.3 6.8 32 46-77 231-262 (399)
44 PF03023 MVIN: MviN-like prote 24.3 4.8E+02 0.01 22.8 8.7 45 103-151 48-94 (451)
45 PF07051 OCIA: Ovarian carcino 20.6 3.4E+02 0.0075 19.7 6.4 47 18-73 18-66 (111)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.63 E-value=5e-15 Score=129.59 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH-H--Hhhhc------------CChhH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT-G--FDFTK------------TNRTW 106 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~-~--~si~~------------g~~~~ 106 (155)
++++.|.++++|+|++++|++|.+++++|++|+||+|++++||++++++++++. . .++.. ||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 366999999999999999999999999999999999999999999999999752 1 11111 67777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
+++...++.++.+ .++++++++.+++.+++ ++++|.++++.+
T Consensus 92 ~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~l--l~~l~~~~~v~~ 133 (455)
T COG0534 92 AKRVLGQGLLLAL--LLGLLLAILLLFFAEPL--LRLLGAPAEVLE 133 (455)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHcCCCHhHHH
Confidence 7778788766543 44667789999999999 999998887543
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.46 E-value=9.6e-13 Score=114.51 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHH---H--HHhhhc----------CChhH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL-GDLELAGATLANSWACV---T--GFDFTK----------TNRTW 106 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L-G~~aLAAv~la~~i~~i---~--~~si~~----------g~~~~ 106 (155)
++|.|+++++++|++++|+++.+++++|++|+||+ |+.++||+++++++.++ . +++... |++++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45899999999999999999999999999999999 57789999999887753 1 122111 67777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
+++...++..+.+ .++++...+.+.+.+++ ++++|+||++.+
T Consensus 85 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l--l~~~g~~~~v~~ 126 (441)
T PRK10367 85 LARALVQPLLLAL--GAGALIALLRTPLIDLA--LHIVGGSEAVLE 126 (441)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence 7888777766543 34555667888889999 999999998764
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.43 E-value=2.4e-12 Score=113.16 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWE 107 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~ 107 (155)
....|+++++++|++++++++.+++++|++|+||+|+.++||+++++++.++. ..++.. |+++++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34599999999999999999999999999999999999999999999987651 112211 677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccC--Cchhhhc
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRG--SDPIEFN 152 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g--~~~~v~~ 152 (155)
+++.+++..+.. .++++.+.+.+++.+++ +++++ +|+++.+
T Consensus 105 ~~~~~~~l~~~~--~~~~~~~~l~~~~~~~l--l~l~~~~~~~~v~~ 147 (478)
T PRK10189 105 RAAARQSLVIMT--LFAVLLAVLIHFFGEQI--IDLVAGDATPEVKA 147 (478)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhHHHH--HHHHhCCCChHHHH
Confidence 888888765543 34555677888899999 99984 7888764
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.41 E-value=3.8e-12 Score=111.10 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTW 106 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~ 106 (155)
++++.|+++++++|++++++++.+++++|++|+||+|+.++||+++++++++++ .+++.. |++++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 367999999999999999999999999999999999999999999999987652 122211 67778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhcc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFNT 153 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~~ 153 (155)
+++...++..+.+.+ +++.+++ +++.+++ ++++++||++.+.
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i--l~l~~~~~ev~~~ 126 (464)
T PRK00187 85 ATRLAQAGLWLAWLL--ALVAALL-LWNLKPL--LLLFGQAPQNVDA 126 (464)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH-HHHHHHH--HHHcCCCHHHHHH
Confidence 888887776655333 3433334 4467999 9999999998753
No 5
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.34 E-value=7.5e-12 Score=110.66 Aligned_cols=105 Identities=32% Similarity=0.394 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHhhhc----------------CChhH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVTGFDFTK----------------TNRTW 106 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~~~si~~----------------g~~~~ 106 (155)
+.|.|+++++|.|+++.++.+++.+++|++|+||+|+.++|++++++++.+.+++++.. ++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 57999999999999999999999999999999999999999999999999987666655 57788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
.+.+.+++..++.. ..++....|.+.+|| +.++||||++..
T Consensus 104 lg~~lqrs~~~l~~---~~~~~~~l~~~~~~i--l~~lgq~~~i~~ 144 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLV---QGLPISLLILNSEPI--LLLLGQDPDISR 144 (473)
T ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHccHHH--HHHhCCChhHHH
Confidence 88888888766533 345778999999999 999999998864
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.31 E-value=4.2e-11 Score=104.05 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHH-H--Hhhhc------------CChhHHH
Q 037145 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL-GDLELAGATLANSWACVT-G--FDFTK------------TNRTWEG 108 (155)
Q Consensus 45 e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L-G~~aLAAv~la~~i~~i~-~--~si~~------------g~~~~~~ 108 (155)
-.|.++++++|++++++++.+++++|++|+||+ |++++||+++++++.++. + .++.. |++++++
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~ 89 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAK 89 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHH
Confidence 678899999999999999999999999999995 999999999999987641 1 12211 6777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 109 LSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 109 ~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
+...++..+.. .++++.+++.+.+.+++ +.++++|+++.+
T Consensus 90 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--l~l~~~~~~~~~ 129 (453)
T PRK09575 90 RILTTGLLLLL--LLGPIVSVILFLFADDF--LRAQGAEGRTLE 129 (453)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHcCCChhhHH
Confidence 88777766643 33555678888899999 999999987754
No 7
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.30 E-value=5.3e-11 Score=102.81 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=86.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH-----HHhhhc----------CC
Q 037145 39 EVLDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT-----GFDFTK----------TN 103 (155)
Q Consensus 39 ~~~~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~-----~~si~~----------g~ 103 (155)
+.+++++.|+++++++|++++++.+.+++++|++|+||+|+.++||++++.++.++. +++... |+
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344678999999999999999999999999999999999999999999998876531 121111 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 104 RTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 104 ~~~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
++++++...++..+.+ .++++.+.+.+.+.+++ +.+++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--~~l~~~~~~~~~ 128 (456)
T PRK01766 84 RERIAHQVRQGLWLAL--FLSVLIMLVLYNAVPPI--LNMMNLEPEVAD 128 (456)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHH--HHHcCCCHHHHH
Confidence 6777777777665543 33455567778888999 999999988653
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.00 E-value=6.6e-09 Score=90.78 Aligned_cols=100 Identities=15% Similarity=0.047 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChhH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRTW 106 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~~ 106 (155)
.+++.|+++++++|+.++++++....++|+.|+||+|+.++||.++++++..+ +..++.. |++++
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 35689999999999999999999999999999999999999999999998764 2222222 66677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccC
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRG 145 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g 145 (155)
+.++..++..+.. .++++.+++++.+.+++ ++++.
T Consensus 311 ~~~~~~~~l~~~~--~~~~~~~~~~~~f~~~i--~~~ft 345 (464)
T PRK00187 311 ARRAGRVGIGFGA--VVMLLFAGLFWLLPEAI--IGLFL 345 (464)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHc
Confidence 7777777655543 33555677888999999 99884
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.94 E-value=1.5e-08 Score=87.62 Aligned_cols=107 Identities=16% Similarity=0.054 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTW 106 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~ 106 (155)
.+++.|+++++++|.+++++++.....+|+.+++++|+.++||.++++++.++. ..++.. |+++.
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 357899999999999999999999999999999999999999999999887642 112211 67677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
+.+...++..+.+ .++++.+.+.+.+.+++ ++++++||++.+
T Consensus 314 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--~~lf~~d~~v~~ 355 (456)
T PRK01766 314 ARQYAYIGLAVGL--GMALLTAIFLVLFREQI--ALLYTDDPEVVA 355 (456)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence 7777776655543 33555678888899999 999999998754
No 10
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.80 E-value=7.4e-09 Score=76.71 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHHHHHHHHHHHHHH
Q 037145 55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWEGLSFESFSVFLT 119 (155)
Q Consensus 55 Piil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~~~~~~~~~~ll~ 119 (155)
|++++++++.+.+++|+.++||+|++++||.+++.++..+. ..++.. +|++++.+...+...+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 99999999999999999999999999999999999988752 122221 677777777777766543
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 120 NLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 120 ~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
. ++++.+++.+.+.+++ +++++.|+++.+
T Consensus 81 ~--~~~~~~~~~~~~~~~i--~~~f~~~~~~~~ 109 (162)
T PF01554_consen 81 I--IGLLLSLVLLLFSEFI--LSLFGNDPEVIE 109 (162)
T ss_dssp H--HHHHHHHHHHHHHHCC--HCTSSSTTCCHH
T ss_pred h--cccchhhhhhhHHHHH--HHHhhhhHHHHH
Confidence 3 4566677889999999 999999998654
No 11
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.65 E-value=5.8e-07 Score=73.97 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH-----HHhhhc----------CChhH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT-----GFDFTK----------TNRTW 106 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~-----~~si~~----------g~~~~ 106 (155)
.+++.|++++.++|.++.+++......+|+.+++++|..++++-+.+..+..+. +++... |+++.
T Consensus 211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (342)
T TIGR00797 211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKR 290 (342)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 467899999999999999999999999999999999999999888887766531 111111 56677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
..+...++..+... +++..+...+++.+++ ++++..||++.+
T Consensus 291 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~i--~~~~~~~~~~~~ 332 (342)
T TIGR00797 291 AKEVARVALKLSLL--LGLVLAIILILFREFI--ARLFTNDPEVLE 332 (342)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence 77777766555433 3444567788889999 999999998764
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.53 E-value=1.4e-06 Score=76.49 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=87.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChh
Q 037145 41 LDVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRT 105 (155)
Q Consensus 41 ~~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~ 105 (155)
.+++..|+++++++|..++++.......+=+.+++++|++++||-+++.++..+ ..+++.. |+.+
T Consensus 235 ~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~ 314 (455)
T COG0534 235 PDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYK 314 (455)
T ss_pred CCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 357899999999999999999999999999999999999999999999988764 2222222 5667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 106 WEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 106 ~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
++.+.......+.+ .++++..++.+++.+++ .++|..||++.+
T Consensus 315 ~a~~~~~~~~~~~~--~~~~~~~~i~~~f~~~i--~~lF~~~~~v~~ 357 (455)
T COG0534 315 RARRAARLALKLSL--LIALLIALLLLLFREPI--ISLFTTDPEVIA 357 (455)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHCCCHHHHH
Confidence 77777766655543 34566788999999999 999999888765
No 13
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.47 E-value=3.1e-06 Score=73.84 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChhHHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRTWEG 108 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~~~~ 108 (155)
+..|+++++++|..+++.+......+=+.+++++|+.++||-+++.++..+ ...++.. |+.+++.
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~ 308 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL 308 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence 367999999999999999999999999999999999999999999988754 1222222 5666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 109 LSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 109 ~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
+.......+. +.++++..++.+.+++++ ..+|..|+++.+
T Consensus 309 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~i--~~lFt~d~~v~~ 348 (441)
T PRK10367 309 DVWRAACRQS--GIVALLFSLVYALAGEHI--IALLTSLPQIQQ 348 (441)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHhCCCHHHHH
Confidence 6666554443 333555677888899999 999999988765
No 14
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.46 E-value=3.5e-06 Score=74.26 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH---HHHhhhc------------CChhH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV---TGFDFTK------------TNRTW 106 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i---~~~si~~------------g~~~~ 106 (155)
+++..|+++++++|..++++....-.++-+.+++++|+.++||-+++.++..+ ..+++.. |+.++
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~ 333 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQ 333 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 35789999999999999999999999999999999999999999999887653 1222222 55566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
+.+.......+ .+.++++.+++.+.+++++ ..+|..|+++.+
T Consensus 334 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~i--~~lFt~d~~v~~ 375 (478)
T PRK10189 334 AERQLRHVFWL--STLGLTAIAWLSAPFAGLL--ASFYTQDPDVKH 375 (478)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHcCCCHHHHH
Confidence 66665555443 3333555677888899999 999999998765
No 15
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.46 E-value=2.2e-06 Score=70.48 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHHHHHHHHHHHHHH
Q 037145 55 PMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWEGLSFESFSVFLT 119 (155)
Q Consensus 55 Piil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~~~~~~~~~~ll~ 119 (155)
|+++++++...++.+|++++|++|++++++.+++.++.++. ..++.. ++++++.+...+...+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998877642 112211 455566666666555543
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccCCchhhh
Q 037145 120 NLKVALSSAAMVWVKILQIDNLEQRGSDPIEF 151 (155)
Q Consensus 120 ~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~ 151 (155)
.++++.+++.+++.+++ .++++.|++..
T Consensus 81 --~~~~~~~~~~~~~~~~i--~~~~~~~~~~~ 108 (342)
T TIGR00797 81 --LLGLPVLLVGYFFIDPL--LSLMGADGEVA 108 (342)
T ss_pred --HHHHHHHHHHHHhHHHH--HHHhCCCHHHH
Confidence 33555677888899999 99998776654
No 16
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.40 E-value=5.9e-06 Score=71.92 Aligned_cols=107 Identities=7% Similarity=-0.058 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-hhHHHHHHHHHHHHH---H--HHhhhc----------CChh
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGD-LELAGATLANSWACV---T--GFDFTK----------TNRT 105 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~-~aLAAv~la~~i~~i---~--~~si~~----------g~~~ 105 (155)
+++..|+++++++|..++++.......+-..+++++|+ .++||.++++++..+ . +++... |+++
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~ 308 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYD 308 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChH
Confidence 35678999999999999999998888888889999995 589999999887764 1 222221 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCC-chhhhc
Q 037145 106 WEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGS-DPIEFN 152 (155)
Q Consensus 106 ~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~-~~~v~~ 152 (155)
++.+...++..+... .+++.+++.+.+.+++ +++++. ||++.+
T Consensus 309 ~~~~~~~~~l~l~~~--~~~~~~~~~~~~~~~i--~~lf~~~~~~v~~ 352 (453)
T PRK09575 309 NIKKLLKLAMKVTVL--AGIAWVLLLNLFPETM--IALFNSGDSELIA 352 (453)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHH--HHhHcCCChHHHH
Confidence 777777776655433 3555677888899999 999985 677654
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.01 E-value=0.00013 Score=63.21 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH----HHhhhc------------CChhH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT----GFDFTK------------TNRTW 106 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~----~~si~~------------g~~~~ 106 (155)
+++.|++++.++|..++++.......+|+++.+++|..++++.+.+..+..+. ..++.. |++++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 46889999999999999999999999999998889999999999988776531 111111 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCC
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGS 146 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~ 146 (155)
..+...+...+.. .+++..++..+.+++++ .+++..
T Consensus 299 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~i--i~l~~~ 334 (502)
T TIGR01695 299 LRDLLNQGIRLSL--LLTIPSSFGLLILSIPI--VSLLFE 334 (502)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHhc
Confidence 6666666554432 23444567788889999 876643
No 18
>PRK15099 O-antigen translocase; Provisional
Probab=97.88 E-value=0.00042 Score=59.22 Aligned_cols=103 Identities=14% Similarity=-0.010 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHHHHHH----HHHHhhhc---------CChhHH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAG-HLGDLELAGATLANSWAC----VTGFDFTK---------TNRTWE 107 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG-~LG~~aLAAv~la~~i~~----i~~~si~~---------g~~~~~ 107 (155)
+++..|++++.++|.+++++........|..+++ ++|++++++-+.+..+.. ....++.. +++++.
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~~~ 289 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDI 289 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 4667899999999999999999999999999997 799999999999988743 11112221 444554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCch
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDP 148 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~ 148 (155)
.+...+...... .+.+..++..+++++++ .+++..++
T Consensus 290 ~~~~~~~~~~~~--~~~~~~~~~~~l~a~~i--i~l~~g~~ 326 (416)
T PRK15099 290 TREIVKALKFVL--PAVAAASFTVWLLRDFA--IWLLFSNK 326 (416)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhccHH
Confidence 444444433332 22343456677889999 88765554
No 19
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=97.80 E-value=0.00024 Score=61.32 Aligned_cols=96 Identities=14% Similarity=0.024 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHH-H---Hhhhc------------CChhHHHHHHHH
Q 037145 51 LFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACVT-G---FDFTK------------TNRTWEGLSFES 113 (155)
Q Consensus 51 ~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i~-~---~si~~------------g~~~~~~~~~~~ 113 (155)
|=+.|.+++++++.+++++|+++++| +|+++++++++++++..++ . +|+.. +++++.++...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~ 82 (488)
T TIGR02900 3 KGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKV 82 (488)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 55899999999999999999999999 6999999999999877642 1 12221 344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhh
Q 037145 114 FSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIE 150 (155)
Q Consensus 114 ~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v 150 (155)
...+. +.++++.+.+.+.+.+++ ..+++.+++.
T Consensus 83 ~~~l~--l~~~~~~~~l~~~~~~~i--~~~~~~~~~~ 115 (488)
T TIGR02900 83 SLIFT--LIWSLIVTAIVFLLSPFI--ASTLLKDERS 115 (488)
T ss_pred HHHHH--HHHHHHHHHHHHHhhHHH--HHHHcCChhH
Confidence 55443 233455566777778888 7766666543
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=97.61 E-value=0.00089 Score=58.05 Aligned_cols=99 Identities=9% Similarity=-0.057 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhH-HHHHHHHHHHHHH-HH----hhhc-------C--Ch-hHHHHHH
Q 037145 49 QVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLEL-AGATLANSWACVT-GF----DFTK-------T--NR-TWEGLSF 111 (155)
Q Consensus 49 ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aL-AAv~la~~i~~i~-~~----si~~-------g--~~-~~~~~~~ 111 (155)
++|=+.=..++++++..++++|++++|| +|++++ ++++++.++.+++ .+ ++.. + ++ +++++..
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~ 81 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKEARRAF 81 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3455566788999999999999999999 899999 7999999887542 11 1111 1 22 2333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc--CCchhh
Q 037145 112 ESFSVFLTNLKVALSSAAMVWVKILQIDNLEQR--GSDPIE 150 (155)
Q Consensus 112 ~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~--g~~~~v 150 (155)
.+...+... ..+++..++.+++++++ ..++ |.+++.
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~i--~~~~~~g~~~~~ 119 (502)
T TIGR01695 82 ANTVTTLLI-LSLLLVVLIGIFFAPFV--ISLLAPGFADET 119 (502)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHhcCCCCccH
Confidence 444333322 22333467788889999 8877 556554
No 21
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=97.50 E-value=0.0017 Score=56.02 Aligned_cols=103 Identities=9% Similarity=-0.050 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C---hhhHHHHHH----HHHHHHHH-----HHhhhc-----
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL----G---DLELAGATL----ANSWACVT-----GFDFTK----- 101 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L----G---~~aLAAv~l----a~~i~~i~-----~~si~~----- 101 (155)
+++.|++++.++|..++++.....+.+|++++|+. | ..+.+.+|. +.++..+. +++...
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999984 2 222333332 22222211 111111
Q ss_pred -----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchh
Q 037145 102 -----TNRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPI 149 (155)
Q Consensus 102 -----g~~~~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~ 149 (155)
|++++..+...+...+.. .+++..+..++.+++++ +.++..+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i--i~~~~~~~~ 349 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISL--LLGLITTVILLVIPDEL--GALFYGRPD 349 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHhcCCCc
Confidence 445555555555544432 23444566778888999 887654443
No 22
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.29 E-value=0.0067 Score=53.22 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH----HHHhhhc------------CChhHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV----TGFDFTK------------TNRTWE 107 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i----~~~si~~------------g~~~~~ 107 (155)
++.|++++...|.+++...+....++|..+.+++++-.+++...++.++.+ ++.++.. |+.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 469999999999999999999999999999999999999999999998864 2222222 666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhc
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQ 143 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l 143 (155)
.+...++....+.+ .+..++..+.+++|+..+.+
T Consensus 275 ~~~~~~~l~~~~~i--~iP~~~~~~~~a~~iV~llf 308 (451)
T PF03023_consen 275 RKTLRKALRLILLI--LIPASIGLIVLAEPIVRLLF 308 (451)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHH
Confidence 77777765554333 34445788889999933333
No 23
>PRK10459 colanic acid exporter; Provisional
Probab=97.06 E-value=0.0088 Score=52.06 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHH----H--H-hhh-------cCChhHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACVT----G--F-DFT-------KTNRTWE 107 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i~----~--~-si~-------~g~~~~~ 107 (155)
+++.|.+++.++|.+.+++....+.-+|++++|+ +|+.+++.-+.+..+..+. . + .+. .++++..
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~ 282 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKL 282 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence 5678999999999999999999999999999999 5788888888887766431 1 1 111 1454555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhc-cCC
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQ-RGS 146 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l-~g~ 146 (155)
.+...+...+... +++..+..+...++++ +.+ +|.
T Consensus 283 ~~~~~~~~~~~~~--~~~p~~~~l~~~a~~i--i~ll~g~ 318 (492)
T PRK10459 283 RVGFLKLLSVLGI--INFPLLLGLMVVSNNF--VPLVFGE 318 (492)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhHHH--HHHhcCh
Confidence 5555554443322 2333345566777888 654 453
No 24
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=96.58 E-value=0.022 Score=49.30 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH---H--HHhh-h----c-----CChhH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV---T--GFDF-T----K-----TNRTW 106 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i---~--~~si-~----~-----g~~~~ 106 (155)
++..|++++.++|..++.+....++-+|++++|+ +|+.+++--+.+..+... . .++. + . |+++.
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 5799999999999999999999999999999998 465555544433333322 1 1111 1 1 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhc-cCCc
Q 037145 107 EGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQ-RGSD 147 (155)
Q Consensus 107 ~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l-~g~~ 147 (155)
..+...+...+... +++...+..+.+++|+ +.. +|.+
T Consensus 289 ~~~~~~~~~~~~~~--~~~p~~~~l~~~~~~~--i~~~fg~~ 326 (480)
T COG2244 289 LKKLLRQSLKLLLL--ISIPALLGLLLLAPPI--ITLLFGEK 326 (480)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh--heeecCCc
Confidence 44544444433322 2344456777777777 664 5554
No 25
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=96.19 E-value=0.091 Score=47.56 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH----HHHhhhc------------CChhHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACV----TGFDFTK------------TNRTWE 107 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i----~~~si~~------------g~~~~~ 107 (155)
.+.|++.+...|++++...+-...++|+.+.+.+.+-.++....++-++.+ +++++.. ++.+..
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 699999999999999999999999999999999999999999999988864 3444433 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDN 140 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~ 140 (155)
.....++.-+.. .+.+..+..++.+++|+..
T Consensus 309 ~~~l~~~i~l~l--ll~lP~~~~l~~la~piv~ 339 (518)
T COG0728 309 LKLLDWGLRLTL--LLTLPASAGLLVLAEPIVS 339 (518)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444455544432 3345455688888999933
No 26
>PRK15099 O-antigen translocase; Provisional
Probab=95.79 E-value=0.26 Score=42.08 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHH----HHhhhc----------CChhHHHHHHHHHHHHHHH
Q 037145 56 MIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACVT----GFDFTK----------TNRTWEGLSFESFSVFLTN 120 (155)
Q Consensus 56 iil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i~----~~si~~----------g~~~~~~~~~~~~~~ll~~ 120 (155)
...++++....++.-+..+.| +|+++.+.++...++..++ .+++.. +++++.++.......+.
T Consensus 10 ~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~~~~~~~~~~~~~~~~~l~-- 87 (416)
T PRK15099 10 TAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMV-- 87 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhcCCCHHHHHHHHHHHHHHH--
Confidence 345677777777777878888 7999999999888877642 222211 34444555555544443
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhccCCchh
Q 037145 121 LKVALSSAAMVWVKILQIDNLEQRGSDPI 149 (155)
Q Consensus 121 l~i~~i~~~~~~~~~~~I~~L~l~g~~~~ 149 (155)
+..+++.+++++.+.+|+ +.+++.+|+
T Consensus 88 ~~~~~i~~~~~~~~~~~i--~~~~~~~~~ 114 (416)
T PRK15099 88 LGFSTLLALVFLLAAAPI--SQGLFGHTD 114 (416)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhCCChh
Confidence 334566778889999999 988877775
No 27
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=95.05 E-value=0.11 Score=40.52 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV 94 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i 94 (155)
+++.|++++.++|..++++....++-.|.+++++ .|.++++--+.+.++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~ 253 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASA 253 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999 577788888887777654
No 28
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=93.69 E-value=1.2 Score=39.81 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh--hhHHHHHHHHHHHHH-----HHHhhhc----------CChh
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGD--LELAGATLANSWACV-----TGFDFTK----------TNRT 105 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~--~aLAAv~la~~i~~i-----~~~si~~----------g~~~ 105 (155)
.+..+.++++++|-.+-..++.-+.-+=.++.|.++. .++++-+++...... .+++... |+.+
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 5677789999999999999999999999999999985 578888887766643 2233221 4544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 106 WEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 106 ~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
.+.......... .+.++.+.+...+...+.+ .+.|..|+++.+
T Consensus 323 ~ar~~~~v~~~~--~~~~g~~~~~~~~~~r~~~--~~ift~~~ev~~ 365 (473)
T KOG1347|consen 323 RARVSAKVALQT--SVAIGASLGTTLLACREVL--GQIFTNSKEVLD 365 (473)
T ss_pred hhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHH
Confidence 444444333332 3445666777888888999 999998888765
No 29
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=89.64 E-value=1.7 Score=33.51 Aligned_cols=47 Identities=15% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH
Q 037145 48 NQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV 94 (155)
Q Consensus 48 ~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i 94 (155)
++++.+.|..+++++....+-.|.++++. +|.++++.-+.+..+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~ 231 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASL 231 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999 898889888888877663
No 30
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=85.54 E-value=17 Score=31.49 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh---hhHHHHHHHHHHHHHH
Q 037145 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGD---LELAGATLANSWACVT 95 (155)
Q Consensus 45 e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~---~aLAAv~la~~i~~i~ 95 (155)
.++.+.+.-+|+.++.+...+---+=+.-+.|-.+ +.+|+.|++.++.-++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~ 62 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF 62 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 67889999999999988766555444555555332 2399999999988653
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=74.12 E-value=32 Score=29.79 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHH
Q 037145 56 MIVANVSYYAIPLVSVMFAGH-LGDLELAGATLANSWACV 94 (155)
Q Consensus 56 iil~~ll~~~~~~vDtimvG~-LG~~aLAAv~la~~i~~i 94 (155)
..++++.....+++-...+.| +|+++..-.+.+..+..+
T Consensus 14 ~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~ 53 (492)
T PRK10459 14 TAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGF 53 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHH
Confidence 567888888888998889999 799998888888887764
No 32
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=73.62 E-value=46 Score=26.83 Aligned_cols=95 Identities=9% Similarity=0.020 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChh-hHHHHHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDL-ELAGATLANSWACVTGFDFTK---TNRTWEGLSFESFSVF 117 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~-aLAAv~la~~i~~i~~~si~~---g~~~~~~~~~~~~~~l 117 (155)
-++.+.+.+-..|++.+.+.....+++..+++++ +|-+ ++...-..-++...++..+.. |+..... .
T Consensus 67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi~is~~iGG~~sLta-----~--- 138 (215)
T PF04172_consen 67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAIEISEQIGGIPSLTA-----V--- 138 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHHHHHHHhCChHHHHH-----H---
Confidence 3577889999999999999999999999999999 5633 444444444454444443332 2221111 1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 118 LTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 118 l~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
..++-.+++-.+.+++ +++++-+..+.+
T Consensus 139 -----~VvitGi~Ga~~g~~l--lk~~~I~~~~A~ 166 (215)
T PF04172_consen 139 -----FVVITGILGAVLGPPL--LKLLRIKDPVAR 166 (215)
T ss_pred -----HHHHHhhHHHHhHHHH--HhHcccccHHHH
Confidence 1122345667778999 999987766543
No 33
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=63.90 E-value=81 Score=25.85 Aligned_cols=93 Identities=4% Similarity=-0.027 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChh-hHHHHHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDL-ELAGATLANSWACVTGFDFTK---TNRTWEGLSFESFSVFL 118 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~-aLAAv~la~~i~~i~~~si~~---g~~~~~~~~~~~~~~ll 118 (155)
++.+.+-+...|+.++.+.-...+++..+.+++ +|-+ ++...=+.-++...++.++.. |......
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPIAm~is~~iGG~psLtA---------- 153 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAATTAIALPVSAGIGGIKEITS---------- 153 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhhhHHHHHHHHHHhCCcHHHHH----------
Confidence 567889999999999999999999999999999 5644 344433333444444444332 2221111
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccCCchhhh
Q 037145 119 TNLKVALSSAAMVWVKILQIDNLEQRGSDPIEF 151 (155)
Q Consensus 119 ~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~ 151 (155)
+..++..+++..+.+++ +++++-+..+.
T Consensus 154 ---~~ViitGi~Gai~g~~l--lk~~~I~~~~a 181 (232)
T PRK04288 154 ---FAVIFNAVIIYALGAKF--LKLFRIKNPIA 181 (232)
T ss_pred ---HHHHHHHHHHHHHHHHH--HHHcCCCCHHH
Confidence 11122346777788899 99988765544
No 34
>PRK10711 hypothetical protein; Provisional
Probab=61.20 E-value=90 Score=25.53 Aligned_cols=93 Identities=11% Similarity=-0.021 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChh-hHHHHHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDL-ELAGATLANSWACVTGFDFTK---TNRTWEGLSFESFSVFL 118 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~-aLAAv~la~~i~~i~~~si~~---g~~~~~~~~~~~~~~ll 118 (155)
++.+.+-+-..|+.++...-...+++..+.+++ +|-+ ++...-+.-++...++.++.. |.....
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm~is~~iGG~~sLt----------- 147 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSVTTPIAMAVGGSIGGIPAIS----------- 147 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHHHHHHHHhCCcHHHH-----------
Confidence 566778889999999999999999999999999 5633 444444444455445444432 222111
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccCCchhhh
Q 037145 119 TNLKVALSSAAMVWVKILQIDNLEQRGSDPIEF 151 (155)
Q Consensus 119 ~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~ 151 (155)
+. ..++..+++..+.+++ +++++-+..+.
T Consensus 148 -a~-~ViitGi~Ga~~g~~l--lk~~rI~~~~A 176 (231)
T PRK10711 148 -AV-CVIFVGILGAVFGHTL--LNAMRIRTKAA 176 (231)
T ss_pred -HH-HHHHHHHHHHHHHHHH--HHHcCCCCHHH
Confidence 11 1122356777888999 99998766554
No 35
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=59.10 E-value=98 Score=25.24 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChh-hHHHHHHHH-HHHHHHHHhhhc---CChhHHHHHHHHHHHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGH-LGDL-ELAGATLAN-SWACVTGFDFTK---TNRTWEGLSFESFSVF 117 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~-LG~~-aLAAv~la~-~i~~i~~~si~~---g~~~~~~~~~~~~~~l 117 (155)
+..+.+.+...|+.++.+.-...+++..+.+++ +|-. ++.. ++.. ++...++.++.. |......
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~-Sl~pkSvTtpiAm~vs~~iGG~~sLta--------- 147 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIA-SLLPKSVTTPIAMHVSEMIGGIPAVTA--------- 147 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH-HhhhHHhhHHHHHHHHHHhCChHHHHH---------
Confidence 567778889999999999999999999999999 5643 3444 3333 344444444332 2211111
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 118 LTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 118 l~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
. ..++-.+++..+.+++ +++++-+..+.+
T Consensus 148 ---~-~vvitGi~Ga~~g~~l--l~~~~i~~~~A~ 176 (226)
T TIGR00659 148 ---V-FVILTGLLGTVFGPMV--LRYFRVKNEIAR 176 (226)
T ss_pred ---H-HHHHHHHHHHHHHHHH--HHHcCCCcHHHH
Confidence 1 1122345677788999 999887665543
No 36
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=49.93 E-value=90 Score=27.15 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037145 47 KNQVLFSLPMIVANVSYYAIPLVSVMFAGHL 77 (155)
Q Consensus 47 k~ll~lalPiil~~ll~~~~~~vDtimvG~L 77 (155)
|-+|-+..=++...++-.+..++-..|.|++
T Consensus 194 Ki~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 194 KILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 5566666666666677777889999999996
No 37
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=47.62 E-value=1.1e+02 Score=27.20 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037145 46 AKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL 77 (155)
Q Consensus 46 ~k~ll~lalPiil~~ll~~~~~~vDtimvG~L 77 (155)
-|-+|-+..=++++.++-....++..+|.|++
T Consensus 264 eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15477 264 EKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35666666667777777778889999999996
No 38
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=47.53 E-value=1.1e+02 Score=27.19 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037145 46 AKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL 77 (155)
Q Consensus 46 ~k~ll~lalPiil~~ll~~~~~~vDtimvG~L 77 (155)
-|-+|-+..=++++.++-....++..+|.|++
T Consensus 264 eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15476 264 EKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35666666667777777778889999999996
No 39
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=47.14 E-value=1.1e+02 Score=27.15 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037145 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL 77 (155)
Q Consensus 45 e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L 77 (155)
.-|-+|-+..=++++.++-....++..+|.|++
T Consensus 263 ~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15475 263 REKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred cchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 336667666667777777778889999999996
No 40
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=45.25 E-value=1.3e+02 Score=25.92 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----Chhh-HHHHHHHHHHHHHH--HHhhhcCChhHHHHHHH
Q 037145 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL----GDLE-LAGATLANSWACVT--GFDFTKTNRTWEGLSFE 112 (155)
Q Consensus 45 e~k~ll~lalPiil~~ll~~~~~~vDtimvG~L----G~~a-LAAv~la~~i~~i~--~~si~~g~~~~~~~~~~ 112 (155)
.-|-+|-+.+=++.+.++-....++..+|.|++ |..+ ++= +..+-+.++. .++..+|.+-.....++
T Consensus 207 ~EkIlFPiv~~i~~~ll~P~a~PLvGmlmfGNL~rE~GVv~RLs~-taqn~linivTI~LgLsVGsk~~ad~FL~ 280 (375)
T COG1883 207 REKILFPIVLLILVALLLPSAAPLVGMLMFGNLLRESGVVERLSD-TAQNELINIVTIFLGLSVGSKMRADKFLT 280 (375)
T ss_pred hhhhhhhHHHHHHHHHHccchhHHHHHHHHhHHHHHhcHHHHHHH-HHHHHHHHHHHHHHhhccccccchhhcCC
Confidence 345566666666667777777889999999996 4333 322 2224444431 23444455555555543
No 41
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=44.92 E-value=1.1e+02 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=23.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHhh
Q 037145 68 LVSVMFAGHLGDLELAGATLANSWACVTGFDF 99 (155)
Q Consensus 68 ~vDtimvG~LG~~aLAAv~la~~i~~i~~~si 99 (155)
.+|..+=-.+|-..+||++++|.+.-+.+++.
T Consensus 24 ~Id~~lg~~~giStmAAAalGN~vSDv~Gi~~ 55 (111)
T PF10507_consen 24 YIDNTLGVTFGISTMAAAALGNLVSDVAGIGL 55 (111)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhhhhhhHH
Confidence 56666666678888999999999887654433
No 42
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=39.24 E-value=1.7e+02 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037145 46 AKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL 77 (155)
Q Consensus 46 ~k~ll~lalPiil~~ll~~~~~~vDtimvG~L 77 (155)
.|-+|-+..=+++..++-.+..++-..|.|++
T Consensus 193 ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 193 EKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 35555555555666666677889999999996
No 43
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=37.50 E-value=1.5e+02 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037145 46 AKNQVLFSLPMIVANVSYYAIPLVSVMFAGHL 77 (155)
Q Consensus 46 ~k~ll~lalPiil~~ll~~~~~~vDtimvG~L 77 (155)
.|-+|-+..=++++.++-.+..++-..|.|++
T Consensus 231 eKilFpivv~i~~~ll~P~a~pLig~Lm~GNl 262 (399)
T TIGR03136 231 AKFVFTIVAAMLLCLLLPVASPLILSFFLGVA 262 (399)
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35566666666677777778889999999996
No 44
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=24.34 E-value=4.8e+02 Score=22.75 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc--CCchhhh
Q 037145 103 NRTWEGLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQR--GSDPIEF 151 (155)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~--g~~~~v~ 151 (155)
++++..+...+...+. ..+.++.+++.+++++++ .+++ |.|++..
T Consensus 48 ~~~~~~~f~~~~~~~~--~~~~~~l~~l~~lfa~~i--v~~la~g~~~~~~ 94 (451)
T PF03023_consen 48 GEEEARRFISTLLTIL--LIISLLLTLLGILFAPPI--VRLLAPGFSPETI 94 (451)
T ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHCCCCChHHH
Confidence 3344444444433332 223555678889999999 6655 6666544
No 45
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=20.64 E-value=3.4e+02 Score=19.73 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCCCCCCCCCchhhhhhhhhhhhhcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037145 18 GDNINNYNLGEEERRWCRKWKEVLDVEEAKN--QVLFSLPMIVANVSYYAIPLVSVMF 73 (155)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~k~--ll~lalPiil~~ll~~~~~~vDtim 73 (155)
..-...|...+|+..+ .+|.+. +|.=++|..+...+-+-+.+-.-++
T Consensus 18 ~~~~~~~~~T~EE~kv---------lrEC~~ESFwyRslPls~~s~~~t~~lv~~G~l 66 (111)
T PF07051_consen 18 PHPGMPYQLTEEERKV---------LRECNEESFWYRSLPLSAGSMLVTQGLVKKGYL 66 (111)
T ss_pred CCCCcCccCCHHHHHH---------HHHHHHhhhHhccCcHHHHHHHHHHHHHHcCcc
Confidence 4556777777776665 334333 8888999988876644444444333
Done!