Query 037145
Match_columns 155
No_of_seqs 114 out of 1098
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.1 8.1E-10 2.8E-14 92.2 11.5 105 43-152 8-127 (460)
2 3mkt_A Multi antimicrobial ext 98.4 5E-07 1.7E-11 75.2 8.2 105 43-151 234-353 (460)
3 2imu_A Structural polyprotein 8.6 2E+02 0.0067 16.8 1.8 18 42-59 3-20 (46)
4 3otr_A Enolase; structural gen 5.1 3.8E+02 0.013 22.9 2.6 45 44-89 65-123 (452)
5 2zy9_A Mg2+ transporter MGTE; 4.3 7.5E+02 0.026 20.5 4.0 17 133-151 429-445 (473)
6 3tgu_G UQCRQ, mitochondrial ub 4.1 8.5E+02 0.029 15.5 3.7 21 43-63 39-59 (81)
7 3kj0_B BCL-2-like protein 11; 3.1 5.7E+02 0.02 13.0 1.3 10 40-49 8-17 (27)
8 3qtp_A Enolase 1; glycolysis, 3.1 7E+02 0.024 21.1 2.6 44 45-89 70-121 (441)
9 1pp9_G Ubiquinol-cytochrome C 3.0 1.1E+03 0.038 14.9 3.7 22 42-63 38-59 (81)
10 2vgl_S AP-2 complex subunit si 2.6 1.4E+03 0.047 15.2 3.7 25 55-80 77-101 (142)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.08 E-value=8.1e-10 Score=92.21 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhh--hc----------CChhHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDF--TK----------TNRTWE 107 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si--~~----------g~~~~~ 107 (155)
+++.|+++++++|++++++++.+++++|++++||+|++++++.++++++..+. ..++ .. +++++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 67999999999999999999999999999999999999999999999986541 1121 11 566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhhc
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEFN 152 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~~ 152 (155)
.+...+...+...+ +++ ..+++++.+++ +.+++.++++.+
T Consensus 88 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~i--~~~~~~~~~~~~ 127 (460)
T 3mkt_A 88 PFEVHQGLILALLV--SVP-IIAVLFQTQFI--IRFMDVEEAMAT 127 (460)
T ss_dssp HHHHHHHHHHHHHH--HHH-HHHHHHHHHTT--CSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHH--HHH-HHHHHHhHHHH--HHHhCCCHHHHH
Confidence 77777765554332 343 33457889999 999998887543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.44 E-value=5e-07 Score=75.19 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH---HHhhhc------------CChhHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSYYAIPLVSVMFAGHLGDLELAGATLANSWACVT---GFDFTK------------TNRTWE 107 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~~~~~~vDtimvG~LG~~aLAAv~la~~i~~i~---~~si~~------------g~~~~~ 107 (155)
+++.|+++++++|..++++.......+|+++++++|+.++|+-++++++..+. ..++.. |++++.
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~ 313 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA 313 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 45788899999999999999999999999999999999999999999987642 112111 566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchhhh
Q 037145 108 GLSFESFSVFLTNLKVALSSAAMVWVKILQIDNLEQRGSDPIEF 151 (155)
Q Consensus 108 ~~~~~~~~~ll~~l~i~~i~~~~~~~~~~~I~~L~l~g~~~~v~ 151 (155)
.+...+...+... +++..+++.+++++++ ..++..|+++.
T Consensus 314 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i--~~l~~~~~~~~ 353 (460)
T 3mkt_A 314 AIAANVGLMTGLA--TACITALLTVLFREQI--ALLYTENQVVV 353 (460)
T ss_dssp TTHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HTCSSCCSTTH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHcCCCHHHH
Confidence 6666665444322 3445567888899999 99988777653
No 3
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=8.58 E-value=2e+02 Score=16.76 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 037145 42 DVEEAKNQVLFSLPMIVA 59 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~ 59 (155)
++...|.+.+++.|.+-+
T Consensus 3 ~~Diir~irr~a~PVvsT 20 (46)
T 2imu_A 3 FKDIIRAIRRIAVPVVST 20 (46)
T ss_dssp HHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhc
Confidence 456778899999987543
No 4
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=5.13 E-value=3.8e+02 Score=22.90 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------ccCChhhHHHHHHHH
Q 037145 44 EEAKNQVLFSLPMIVANVSYYAIPLVSVMFA--------------GHLGDLELAGATLAN 89 (155)
Q Consensus 44 ~e~k~ll~lalPiil~~ll~~~~~~vDtimv--------------G~LG~~aLAAv~la~ 89 (155)
+-...+=..--|.++++ --.=..-+|.+|+ +++|.+++-||++|.
T Consensus 65 kAv~~vn~~Iap~Lig~-d~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAv 123 (452)
T 3otr_A 65 NAVEIVRQEIKPALLGK-DPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIAC 123 (452)
T ss_dssp HHHHHHHHTHHHHHTTC-CTTCHHHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-ChHhHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHH
Confidence 34444555555666541 1122345899998 569999988888765
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=4.32 E-value=7.5e+02 Score=20.48 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=12.0
Q ss_pred HhHHhhhhhhccCCchhhh
Q 037145 133 VKILQIDNLEQRGSDPIEF 151 (155)
Q Consensus 133 ~~~~~I~~L~l~g~~~~v~ 151 (155)
...+-+ ++-+|.||.++
T Consensus 429 ~~~p~~--~~~~~~DPa~~ 445 (473)
T 2zy9_A 429 AMLPFL--LRRLGVDPALV 445 (473)
T ss_dssp TTHHHH--HHHHTCCGGGS
T ss_pred HHHHHH--HHHcCCCcccc
Confidence 344666 77788898765
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=4.09 E-value=8.5e+02 Score=15.50 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037145 43 VEEAKNQVLFSLPMIVANVSY 63 (155)
Q Consensus 43 ~~e~k~ll~lalPiil~~ll~ 63 (155)
|+-...++.++.|.++.-++.
T Consensus 39 RR~~~q~l~v~pPfi~~Y~i~ 59 (81)
T 3tgu_G 39 RRFSSQVFKVAPPFLGAYLLY 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhHHHHHHHHHH
Confidence 445566899999999887664
No 7
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=3.12 E-value=5.7e+02 Score=12.97 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=4.9
Q ss_pred hhcHHHHHHH
Q 037145 40 VLDVEEAKNQ 49 (155)
Q Consensus 40 ~~~~~e~k~l 49 (155)
.|..+|+|.+
T Consensus 8 ~wiAqELRRI 17 (27)
T 3kj0_B 8 IWYAQELRRI 17 (27)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3445565543
No 8
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=3.12 E-value=7e+02 Score=21.12 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCChhhHHHHHHHH
Q 037145 45 EAKNQVLFSLPMIVANVSYYAIPLVSVMFA--------GHLGDLELAGATLAN 89 (155)
Q Consensus 45 e~k~ll~lalPiil~~ll~~~~~~vDtimv--------G~LG~~aLAAv~la~ 89 (155)
-...+=..--|.++++= -.=..-+|.+|+ +++|.+++-||++|.
T Consensus 70 Av~~vn~~iap~Lig~~-~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAv 121 (441)
T 3qtp_A 70 AVENVNTIIGPALLGKN-VLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSI 121 (441)
T ss_dssp HHHHHHHTHHHHHTTCB-TTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhccCCCCccCCCccchhhHHHHH
Confidence 34444455556555321 112245788887 458999888888866
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=2.98 E-value=1.1e+03 Score=14.88 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 037145 42 DVEEAKNQVLFSLPMIVANVSY 63 (155)
Q Consensus 42 ~~~e~k~ll~lalPiil~~ll~ 63 (155)
+|+-...++.++.|.++..++.
T Consensus 38 ~RR~~~~~l~v~pPfv~~Y~i~ 59 (81)
T 1pp9_G 38 LRRTRACILRVAPPFVAFYLVY 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcceeeehhHHHHHHHH
Confidence 3444556888899988877654
No 10
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=2.64 E-value=1.4e+03 Score=15.25 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChh
Q 037145 55 PMIVANVSYYAIPLVSVMFAGHLGDL 80 (155)
Q Consensus 55 Piil~~ll~~~~~~vDtimvG~LG~~ 80 (155)
|+.+-.+++-...+.|.+| |.+.+.
T Consensus 77 ~l~~le~L~~~ve~l~~yf-~~v~E~ 101 (142)
T 2vgl_S 77 NLAYLEAIHNFVEVLNEYF-HNVCEL 101 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHH-ccCCHH
Confidence 5666677888888888887 666543
Done!