Query         037146
Match_columns 185
No_of_seqs    152 out of 1142
Neff          4.4 
Searched_HMMs 29240
Date          Mon Mar 25 15:22:26 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037146hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 8.4E-45 2.9E-49  289.1  14.5  134   48-185     1-137 (137)
  2 2j01_L 50S ribosomal protein L 100.0 9.9E-41 3.4E-45  262.2  13.9  121   49-184     4-124 (125)
  3 2zjq_5 50S ribosomal protein L 100.0 3.2E-40 1.1E-44  258.4  13.9  118   49-184     4-121 (122)
  4 1dd3_A 50S ribosomal protein L 100.0 1.9E-41 6.4E-46  267.1   4.0  122   50-184     3-127 (128)
  5 3sgf_J 50S ribosomal protein L 100.0 1.8E-41 6.2E-46  265.1  -0.8  117   49-184     4-120 (121)
  6 1ctf_A Ribosomal protein L7/L1 100.0 1.1E-30 3.7E-35  189.1   7.1   71  113-184     3-73  (74)
  7 1dd4_C 50S ribosomal protein L  99.1 2.1E-10 7.1E-15   74.0   5.0   33   49-81      2-34  (40)
  8 1zav_U 50S ribosomal protein L  98.6 3.1E-08 1.1E-12   60.3   3.6   28   50-77      3-30  (30)
  9 2cp9_A EF-TS, EF-TSMT, elongat  86.6    0.46 1.6E-05   33.0   2.8   27  131-157    10-36  (64)
 10 2jml_A DNA binding domain/tran  53.6     9.9 0.00034   25.7   2.9   28  129-156    51-78  (81)
 11 1mul_A NS2, HU-2, DNA binding   40.5      13 0.00044   25.8   1.8   34  129-162     2-35  (90)
 12 3rhi_A DNA-binding protein HU;  38.6      11 0.00039   26.5   1.3   34  129-162     5-38  (93)
 13 3c4i_A DNA-binding protein HU   36.8      15 0.00053   26.1   1.8   34  129-162     2-35  (99)
 14 1p71_A DNA-binding protein HU;  36.7      16 0.00053   25.7   1.8   34  129-162     2-35  (94)
 15 1b8z_A Protein (histonelike pr  36.3      25 0.00085   24.3   2.8   34  129-162     2-35  (90)
 16 1q08_A Zn(II)-responsive regul  36.2      31  0.0011   23.7   3.3   25  129-154     4-28  (99)
 17 2o97_B NS1, HU-1, DNA-binding   35.3      25 0.00087   24.3   2.7   33  129-161     2-34  (90)
 18 2p63_A Cell division control p  35.1      40  0.0014   22.7   3.5   27   50-76     27-53  (56)
 19 1exe_A Transcription factor 1;  34.0       7 0.00024   28.0  -0.5   34  130-163     3-36  (99)
 20 1owf_A IHF-alpha, integration   32.9      19 0.00065   25.5   1.7   34  129-162     4-37  (99)
 21 1owf_B IHF-beta, integration H  30.1      24 0.00082   24.6   1.8   33  129-161     2-35  (94)
 22 1l0i_A Acyl carrier protein; a  29.4      50  0.0017   21.2   3.3   23   59-81     34-56  (78)
 23 1f80_D Acyl carrier protein; t  28.9      51  0.0017   21.3   3.2   24   58-81     37-60  (81)
 24 1ctf_A Ribosomal protein L7/L1  28.2      56  0.0019   23.1   3.5   24   48-71     20-43  (74)
 25 2lol_A ACP, acyl carrier prote  27.6      56  0.0019   21.1   3.3   24   58-81     36-59  (81)
 26 1r8e_A Multidrug-efflux transp  27.5      47  0.0016   26.6   3.4   27  128-155    50-76  (278)
 27 3gzm_A Acyl carrier protein; h  27.2      57  0.0019   21.3   3.3   24   58-81     35-58  (81)
 28 1x3o_A Acyl carrier protein; s  26.6      61  0.0021   20.6   3.3   22   59-80     36-57  (80)
 29 2qnw_A Acyl carrier protein; m  25.9      62  0.0021   21.1   3.3   23   58-80     37-59  (82)
 30 2ehs_A ACP, acyl carrier prote  25.8      65  0.0022   20.3   3.3   23   59-81     32-54  (77)
 31 2l4b_A Acyl carrier protein; i  25.5      62  0.0021   21.5   3.2   23   58-80     41-63  (88)
 32 3a1y_A 50S ribosomal protein P  25.4      31  0.0011   22.8   1.6   16  168-183    19-34  (58)
 33 2jq4_A AGR_C_4658P, hypothetic  25.3      62  0.0021   22.9   3.4   21   60-80     55-75  (105)
 34 2kwl_A ACP, acyl carrier prote  25.1      64  0.0022   21.1   3.2   23   58-80     39-61  (84)
 35 2np2_A HBB; protein-DNA comple  24.9      30   0.001   25.0   1.6   33  129-161    10-47  (108)
 36 2amw_A Hypothetical protein NE  24.7      62  0.0021   21.3   3.1   20   61-80     38-57  (83)
 37 1in0_A YAJQ protein, HI1034; a  23.6      45  0.0015   26.9   2.5   63  119-183    47-122 (163)
 38 2e6f_A Dihydroorotate dehydrog  22.0      93  0.0032   25.6   4.3   42  129-182   147-191 (314)
 39 2cgq_A Acyl carrier protein AC  22.0      75  0.0026   23.2   3.3   23   58-80     55-77  (113)
 40 2dnw_A Acyl carrier protein; A  21.9      77  0.0026   21.7   3.2   22   59-80     46-67  (99)
 41 1v5i_B POIA1, IA-1=serine prot  21.9      47  0.0016   22.3   2.0   25  158-182     8-32  (76)
 42 2kw2_A Specialized acyl carrie  21.8      77  0.0026   22.0   3.2   22   59-80     34-55  (101)
 43 3gpv_A Transcriptional regulat  21.7      69  0.0024   24.2   3.2   26  128-154    60-85  (148)
 44 2cnr_A FAS, ACP, acyl carrier   21.0      64  0.0022   20.7   2.5   24   58-81     37-60  (82)
 45 2j01_L 50S ribosomal protein L  21.0      98  0.0034   23.8   3.9   29   47-76     71-99  (125)
 46 2zjq_5 50S ribosomal protein L  20.6   1E+02  0.0035   23.6   3.9   30   46-76     67-96  (122)
 47 1or5_A Acyl carrier protein; A  20.4      61  0.0021   21.1   2.3   24   58-81     36-59  (83)
 48 4dxe_H ACP, acyl carrier prote  20.2      86  0.0029   22.2   3.2   23   59-81     57-79  (101)
 49 2l9f_A CALE8, meacp; transfera  20.1      83  0.0028   23.2   3.2   23   58-80     44-66  (102)
 50 2zhg_A Redox-sensitive transcr  20.0      86  0.0029   23.9   3.4   27  128-155    54-80  (154)

No 1  
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00  E-value=8.4e-45  Score=289.15  Aligned_cols=134  Identities=32%  Similarity=0.526  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCC-C-CCCccccccccceeEEEEecC
Q 037146           48 EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGG-T-GTGKAEEKVEKTVFDLKLAGY  125 (185)
Q Consensus        48 ~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~-a-~~~~~e~~~EKt~f~V~L~~~  125 (185)
                      +||++|+|+|++|||+|++||++.|+++|||++.++++.    +++.+++++++++ + +++++++.+|||+|||+|++|
T Consensus         1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~----~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~   76 (137)
T 2ftc_E            1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPM----GGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEA   76 (137)
T ss_pred             CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCccccccc----ccccccCCCCccccccccccccccccCCeeEEEeecc
Confidence            589999999999999999999999999999998753211    1110111001111 1 111123357999999999999


Q ss_pred             CcchhHHHHHHHHhh-cCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          126 GAEAKLKVIKEVRGF-TGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       126 ~a~kKi~vIK~VR~i-t~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      |+++||+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus        77 ~a~~KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele  137 (137)
T 2ftc_E           77 KPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE  137 (137)
T ss_pred             CccchhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            989999999999997 999999999999999999999999999999999999999999997


No 2  
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00  E-value=9.9e-41  Score=262.20  Aligned_cols=121  Identities=40%  Similarity=0.578  Sum_probs=103.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcc
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAE  128 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~  128 (185)
                      ++++|+|+|++|||+|++||++.|+++|||++++++++     +   +++++++ +    .+..+|||+|||+|++|+ +
T Consensus         4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaapva~-----~---~~~~~a~-~----a~a~eEKteFdV~L~~~~-~   69 (125)
T 2j01_L            4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAV-----A---AAPAAGA-A----AAPAEEKTEFDVILKEAG-A   69 (125)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCccccccc-----c---ccCcccc-c----cccccccceeEEEEeeCC-c
Confidence            57899999999999999999999999999998643211     0   0111111 1    123478999999999997 7


Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +||+|||+||++|||||||||+|||++ ++||+|++|+|||+||++|+++||+|+|
T Consensus        70 ~KI~VIK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel  124 (125)
T 2j01_L           70 KKLEVIKELRAITGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVVEL  124 (125)
T ss_pred             chHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence            999999999999999999999999999 9999999999999999999999999997


No 3  
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00  E-value=3.2e-40  Score=258.39  Aligned_cols=118  Identities=41%  Similarity=0.669  Sum_probs=102.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcc
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAE  128 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~  128 (185)
                      ++++|+|+|++|||+|++||++.|+++|||+++++++      +   +++ +++ +     +..+|||+|||+|++|+ +
T Consensus         4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a------~---a~~-~a~-a-----~a~eEKteFdV~L~~~~-~   66 (122)
T 2zjq_5            4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVS------G---GGA-GAA-S-----PAAEEKTEFDVVLIDAG-A   66 (122)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccc------c---cCC-Ccc-c-----ccccccceeEEEEecCC-c
Confidence            4789999999999999999999999999999864221      0   011 111 1     12468999999999997 7


Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +||+|||+||++|||||||||+|||++ ++||+|++|+|||+||++|+++||+|+|
T Consensus        67 ~KI~VIK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel  121 (122)
T 2zjq_5           67 SKINVIKEIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL  121 (122)
T ss_pred             chHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence            999999999999999999999999999 9999999999999999999999999997


No 4  
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00  E-value=1.9e-41  Score=267.13  Aligned_cols=122  Identities=39%  Similarity=0.641  Sum_probs=103.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcch
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAEA  129 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~k  129 (185)
                      +++|+|+|++|||+|++||++.|+++|||+++++++.+   +     ++++++ +   +.+..+|||+|||+|++|+ ++
T Consensus         3 ~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~-----~~~~~~-a---~~~a~eEKteFdV~L~~~~-~~   69 (128)
T 1dd3_A            3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---A-----APVAGA-A---AGAAQEEKTEFDVVLKSFG-QN   69 (128)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---H-----HHHHHH-H---HHHHHHTTSSEEEEEEECT-TC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---c-----cccccc-c---ccccccccceeeEEEecCC-cc
Confidence            68999999999999999999999999999976422110   0     010010 0   1123478999999999997 79


Q ss_pred             hHHHHHHHHhhcCCChhHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          130 KLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       130 Ki~vIK~VR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      ||+|||+||++|||||||||+|||++|+   +||+|++|+|||+||++|+++||+|+|
T Consensus        70 KI~VIK~VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel  127 (128)
T 1dd3_A           70 KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL  127 (128)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999999999999999999999999999   999999999999999999999999997


No 5  
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=100.00  E-value=1.8e-41  Score=265.06  Aligned_cols=117  Identities=41%  Similarity=0.667  Sum_probs=27.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcc
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAE  128 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~  128 (185)
                      .+++|+|+|++||++|++||++.|+++|||+++++++           ++ + + +    .+..+|||+|||+|++++ +
T Consensus         4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a-----------~~-a-~-~----a~a~eEKteFdV~L~~~g-~   64 (121)
T 3sgf_J            4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA-----------VA-A-G-P----VEAAEEKTEFDVILKAAG-A   64 (121)
T ss_dssp             CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc-----------cc-c-c-c----cccccccceeEEEEecCc-h
Confidence            5789999999999999999999999999999764320           01 0 1 0    122468999999999997 6


Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +||+|||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus        65 ~Ki~VIK~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel  120 (121)
T 3sgf_J           65 NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV  120 (121)
T ss_dssp             --------------------------------------------------------
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence            99999999999999999999999999999999999999999999999999999987


No 6  
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.96  E-value=1.1e-30  Score=189.05  Aligned_cols=71  Identities=54%  Similarity=0.788  Sum_probs=66.1

Q ss_pred             cccceeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          113 VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       113 ~EKt~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +|||+|||+|++++ ++||+|||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus         3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel   73 (74)
T 1ctf_A            3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   73 (74)
T ss_dssp             ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            58999999999997 799999999999999999999999999999999999999999999999999999997


No 7  
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=99.05  E-value=2.1e-10  Score=74.03  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ++++|+|+|++||++|++||++.||++|||+++
T Consensus         2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaa   34 (40)
T 1dd4_C            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAA   34 (40)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSC
T ss_pred             CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCcc
Confidence            478999999999999999999999999999975


No 8  
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=98.60  E-value=3.1e-08  Score=60.26  Aligned_cols=28  Identities=25%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKLG   77 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekfg   77 (185)
                      +++|+|+|++||++|++||++.||++||
T Consensus         3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U            3 IDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999998


No 9  
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=86.63  E-value=0.46  Score=32.96  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHhhcch
Q 037146          131 LKVIKEVRGFTGLGLKESKELVEKVPT  157 (185)
Q Consensus       131 i~vIK~VR~it~LgLkEAK~lVe~~P~  157 (185)
                      ...||+||+.||.|.+|+|+.++.+-.
T Consensus        10 ~~~Vk~LRe~TGag~~dcKkAL~e~~G   36 (64)
T 2cp9_A           10 KELLMKLRRKTGYSFVNCKKALETCGG   36 (64)
T ss_dssp             CHHHHHHHHHHCCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            367999999999999999998766543


No 10 
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=53.56  E-value=9.9  Score=25.75  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcc
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVP  156 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P  156 (185)
                      ..+..|+.+|.-.|++|+|.+++++..|
T Consensus        51 ~~l~~I~~l~~~~G~sl~ei~~~l~~~~   78 (81)
T 2jml_A           51 EAVRRVARLIQEEGLSVSEAIAQVKTEP   78 (81)
T ss_dssp             HHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence            5777888888678999999999998765


No 11 
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=40.47  E-value=13  Score=25.84  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG  162 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~  162 (185)
                      +|-.+|+.|.+-++|.-++++..|+.+-.+|.+.
T Consensus         2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~   35 (90)
T 1mul_A            2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITES   35 (90)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999999999999987776653


No 12 
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=38.57  E-value=11  Score=26.45  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG  162 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~  162 (185)
                      +|-.+|+.|.+-+||.-++++..|+.+-.+|.+.
T Consensus         5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~   38 (93)
T 3rhi_A            5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNT   38 (93)
T ss_dssp             --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence            4668999999999999999999999987776553


No 13 
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=36.84  E-value=15  Score=26.08  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG  162 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~  162 (185)
                      +|-.+|+.|.+-++|.-++++.+|+.+-.+|.+.
T Consensus         2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~   35 (99)
T 3c4i_A            2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRA   35 (99)
T ss_dssp             BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            3668999999999999999999999987776653


No 14 
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=36.70  E-value=16  Score=25.68  Aligned_cols=34  Identities=9%  Similarity=0.110  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG  162 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~  162 (185)
                      +|-.+|+.|.+.++|.-++++..|+.+-.+|.+.
T Consensus         2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~   35 (94)
T 1p71_A            2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEA   35 (94)
T ss_dssp             BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            3668899999999999999999999887766543


No 15 
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=36.33  E-value=25  Score=24.28  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG  162 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~  162 (185)
                      +|-.+|+.|.+.++|.-++++..|+.+-.+|.+.
T Consensus         2 tk~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~   35 (90)
T 1b8z_A            2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEA   35 (90)
T ss_dssp             CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence            3668899999999999999999999987776553


No 16 
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=36.22  E-value=31  Score=23.71  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhh
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEK  154 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~  154 (185)
                      .++..|+..|+ +|++|.|-|++++.
T Consensus         4 ~rL~~I~~lr~-lGfsL~eIk~~l~~   28 (99)
T 1q08_A            4 QRLKFIRHARQ-LGFSLESIRELLSI   28 (99)
T ss_dssp             HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            46777888886 49999999999974


No 17 
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=35.34  E-value=25  Score=24.34  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=27.1

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhc
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKR  161 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe  161 (185)
                      +|-.+|+.|.+.++|.-++++..|+.+-.+|.+
T Consensus         2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~   34 (90)
T 2o97_B            2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTE   34 (90)
T ss_dssp             BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            366889999999999999999999988776654


No 18 
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=35.09  E-value=40  Score=22.67  Aligned_cols=27  Identities=15%  Similarity=0.322  Sum_probs=23.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKL   76 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekf   76 (185)
                      -.-|..-+++|+--|++||+..|++.+
T Consensus        27 knLiF~Lvs~m~RseLSDl~TlikDNL   53 (56)
T 2p63_A           27 KNLLFRLVANMDRSELSDLGTLIKDNL   53 (56)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            344667789999999999999999876


No 19 
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=34.01  E-value=7  Score=27.99  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCC
Q 037146          130 KLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGV  163 (185)
Q Consensus       130 Ki~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v  163 (185)
                      |-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus         3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L   36 (99)
T 1exe_A            3 KTELIKAIAQDTGLTQVSVSKMLASFEKIITETV   36 (99)
T ss_dssp             TTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999887776543


No 20 
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=32.94  E-value=19  Score=25.51  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG  162 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~  162 (185)
                      .|-.+|+.|.+.++|.-++++..|+.+-.+|.+.
T Consensus         4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~   37 (99)
T 1owf_A            4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRA   37 (99)
T ss_dssp             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            4668999999999999999999999987776653


No 21 
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=30.05  E-value=24  Score=24.63  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=27.7

Q ss_pred             hhHHHHHHHHhh-cCCChhHHHHHHhhcchhhhc
Q 037146          129 AKLKVIKEVRGF-TGLGLKESKELVEKVPTLLKR  161 (185)
Q Consensus       129 kKi~vIK~VR~i-t~LgLkEAK~lVe~~P~~IKe  161 (185)
                      +|-.+|+.|.+. ++|.-++++..|+.+-.+|.+
T Consensus         2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~   35 (94)
T 1owf_B            2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMAS   35 (94)
T ss_dssp             BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            366889999988 799999999999988776654


No 22 
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=29.45  E-value=50  Score=21.17  Aligned_cols=23  Identities=4%  Similarity=0.105  Sum_probs=18.9

Q ss_pred             cCCHHHHHHHHHHHHHHhCCCCC
Q 037146           59 CLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        59 ~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      .++=+.+.+|+..|+++||+.-.
T Consensus        34 G~DSl~~~el~~~le~~fgi~i~   56 (78)
T 1l0i_A           34 GADSLDTVELVMALEEEFDTEIP   56 (78)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCC
Confidence            46667788999999999999743


No 23 
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=28.93  E-value=51  Score=21.31  Aligned_cols=24  Identities=8%  Similarity=0.189  Sum_probs=20.5

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ..+.=+.+.+|+..|+++||+.-.
T Consensus        37 lG~DSl~~vel~~~le~~fgi~i~   60 (81)
T 1f80_D           37 LGADXLDVVELVMELEDEFDMEIS   60 (81)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred             cCCcHHHHHHHHHHHHHHhCCccC
Confidence            457788899999999999999743


No 24 
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=28.17  E-value=56  Score=23.05  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHH
Q 037146           48 EKVASIVDEISCLSLVEVMDLADV   71 (185)
Q Consensus        48 ~KV~~Ivd~I~~LtLlE~~eLv~~   71 (185)
                      -+|...|.+|-+|.|.|+.+||+.
T Consensus        20 i~vIK~VR~itgLgLkEAK~lVe~   43 (74)
T 1ctf_A           20 VAVIKAVRGATGLGLKEAKDLVES   43 (74)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHh
Confidence            356778999999999999999983


No 25 
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=27.65  E-value=56  Score=21.08  Aligned_cols=24  Identities=13%  Similarity=0.141  Sum_probs=20.5

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ..+.=+.+.+|+..|+++||+.-.
T Consensus        36 lG~DSl~~~el~~~le~~fgi~i~   59 (81)
T 2lol_A           36 LKADSLDTVELMMAIEVEYGIDIP   59 (81)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             cCCcHHHHHHHHHHHHHHHCCCCC
Confidence            567788899999999999999743


No 26 
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.54  E-value=47  Score=26.58  Aligned_cols=27  Identities=26%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhhc
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEKV  155 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~~  155 (185)
                      -.++..|+.+|+. |++|+|.|++++..
T Consensus        50 ~~~l~~i~~l~~~-g~~l~~i~~~~~~~   76 (278)
T 1r8e_A           50 LIHLDLIKSLKYI-GTPLEEMKKAQDLE   76 (278)
T ss_dssp             GGHHHHHHHHHHT-TCCHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHhC
Confidence            4688888888765 99999999999864


No 27 
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=27.21  E-value=57  Score=21.32  Aligned_cols=24  Identities=8%  Similarity=0.166  Sum_probs=20.3

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ..+.=+.+.+|+..|+++|||.-.
T Consensus        35 lg~DSl~~vel~~~le~~fgi~i~   58 (81)
T 3gzm_A           35 LGADSLDLVELIMALEEKFNVTIS   58 (81)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHCCCcC
Confidence            367778899999999999999743


No 28 
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=26.61  E-value=61  Score=20.63  Aligned_cols=22  Identities=9%  Similarity=0.250  Sum_probs=18.5

Q ss_pred             cCCHHHHHHHHHHHHHHhCCCC
Q 037146           59 CLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        59 ~LtLlE~~eLv~~leekfgv~~   80 (185)
                      .+.=+.+.+|+..|+++||+.-
T Consensus        36 G~DSl~~~~l~~~le~~fgi~i   57 (80)
T 1x3o_A           36 GADSLDTVELIMGLEDEFGLEI   57 (80)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCCC
T ss_pred             CccHHHHHHHHHHHHHHHCCCc
Confidence            4566788899999999999964


No 29 
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=25.91  E-value=62  Score=21.11  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~   80 (185)
                      ..+.=+.+.+|+..|+++|||.-
T Consensus        37 lG~DSl~~vel~~~le~~fgi~i   59 (82)
T 2qnw_A           37 LDADSLDSVELVMAFEEKFGVSI   59 (82)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred             cCCcHHHHHHHHHHHHHHHCCcC
Confidence            45777889999999999999974


No 30 
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=25.81  E-value=65  Score=20.28  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=19.0

Q ss_pred             cCCHHHHHHHHHHHHHHhCCCCC
Q 037146           59 CLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        59 ~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      .++=+.+.+|+..|+++||++-.
T Consensus        32 G~DSl~~~~l~~~le~~~gi~i~   54 (77)
T 2ehs_A           32 GADSLDVVELIMAFEEEFGIEIP   54 (77)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccC
Confidence            46667889999999999999643


No 31 
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=25.52  E-value=62  Score=21.49  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~   80 (185)
                      ..+.=+.+.+|+..||++|||.-
T Consensus        41 lglDSl~~vel~~~lE~~fgi~i   63 (88)
T 2l4b_A           41 FNLDSLDFVDLIMSLEERFSLEI   63 (88)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCcHHHHHHHHHHHHHHHCCCc
Confidence            34666788999999999999964


No 32 
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=25.42  E-value=31  Score=22.82  Aligned_cols=16  Identities=19%  Similarity=0.370  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHcCCEEE
Q 037146          168 ADKIVAKLKEVGAQVS  183 (185)
Q Consensus       168 Ae~ik~kle~aGA~Ve  183 (185)
                      +++|++-|+++|.+|+
T Consensus        19 ~~~I~~il~aaGveve   34 (58)
T 3a1y_A           19 EENLKAVLQAAGVEPE   34 (58)
T ss_dssp             HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHcCCCcc
Confidence            6889999999999875


No 33 
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=25.31  E-value=62  Score=22.93  Aligned_cols=21  Identities=19%  Similarity=0.147  Sum_probs=18.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCC
Q 037146           60 LSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        60 LtLlE~~eLv~~leekfgv~~   80 (185)
                      ++=+.+.+|+-.||++|||.-
T Consensus        55 lDSL~~veLv~~lE~~fgI~i   75 (105)
T 2jq4_A           55 LSSFASVQLMLGIEEAFDIEF   75 (105)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCc
Confidence            667899999999999999964


No 34 
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=25.05  E-value=64  Score=21.08  Aligned_cols=23  Identities=9%  Similarity=0.099  Sum_probs=20.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~   80 (185)
                      ..+.=+.+.+|+..|+++|||.-
T Consensus        39 lG~DSl~~vel~~~le~~fgi~i   61 (84)
T 2kwl_A           39 LNADSLDIYELLYLLEEAFDDKI   61 (84)
T ss_dssp             SSSCHHHHHHHHHHHHHHHTCCT
T ss_pred             cCCCHHHHHHHHHHHHHHHCCCc
Confidence            45777889999999999999974


No 35 
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=24.88  E-value=30  Score=24.97  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=28.1

Q ss_pred             hhHHHHHHHH-----hhcCCChhHHHHHHhhcchhhhc
Q 037146          129 AKLKVIKEVR-----GFTGLGLKESKELVEKVPTLLKR  161 (185)
Q Consensus       129 kKi~vIK~VR-----~it~LgLkEAK~lVe~~P~~IKe  161 (185)
                      .|-.+|+.|.     +.++|.-++++..|+.+-.+|.+
T Consensus        10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~   47 (108)
T 2np2_A           10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKS   47 (108)
T ss_dssp             EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            5678999998     78999999999999998776654


No 36 
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=24.70  E-value=62  Score=21.28  Aligned_cols=20  Identities=5%  Similarity=0.179  Sum_probs=17.4

Q ss_pred             CHHHHHHHHHHHHHHhCCCC
Q 037146           61 SLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        61 tLlE~~eLv~~leekfgv~~   80 (185)
                      .=+.+.+|+-.||++|||.-
T Consensus        38 DSl~~~elv~~lE~~fgi~i   57 (83)
T 2amw_A           38 DSMAVVNVITALEEYFDFSV   57 (83)
T ss_dssp             THHHHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHhCCee
Confidence            66778899999999999964


No 37 
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=23.64  E-value=45  Score=26.87  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             EEEEecCCcchhHHHHHHH-Hhh---cCCChhHHH--HHHh-------hcchhhhcCCCHHHHHHHHHHHHHcCCEEE
Q 037146          119 DLKLAGYGAEAKLKVIKEV-RGF---TGLGLKESK--ELVE-------KVPTLLKRGVTKDEADKIVAKLKEVGAQVS  183 (185)
Q Consensus       119 ~V~L~~~~a~kKi~vIK~V-R~i---t~LgLkEAK--~lVe-------~~P~~IKe~vsKeeAe~ik~kle~aGA~Ve  183 (185)
                      .|+|.+-+ +.|+.-+..| +.-   -|+.|+--.  + ++       ..-..||+|++.+.|.+|-+.+.+.+-+|.
T Consensus        47 ~i~l~a~~-d~kl~qv~DiL~~kl~KRgid~k~ld~~~-~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKVq  122 (163)
T 1in0_A           47 TIKITTES-DFQLEQLIEILIGSCIKRGIEHSSLDIPA-ESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQ  122 (163)
T ss_dssp             EEEEEESC-HHHHHHHHHHHHHHHHHTTCCGGGEECCS-SCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred             EEEEEeCC-HHHHHHHHHHHHHHHHHcCCCchhcccCC-CccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcce
Confidence            57787654 6788776644 532   366655211  0 01       113478999999999999999999998874


No 38 
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=22.03  E-value=93  Score=25.56  Aligned_cols=42  Identities=19%  Similarity=0.089  Sum_probs=31.0

Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcC--CCHHHHHHHHHHHHHcC-CEE
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRG--VTKDEADKIVAKLKEVG-AQV  182 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~--vsKeeAe~ik~kle~aG-A~V  182 (185)
                      .-..+|+.||+.+            +.|.++|-.  ++.++..++.+.++++| +..
T Consensus       147 ~~~~ii~~vr~~~------------~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~  191 (314)
T 2e6f_A          147 AMRTYLQQVSLAY------------GLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKF  191 (314)
T ss_dssp             HHHHHHHHHHHHH------------CSCEEEEECCCCCHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHHHHHHHhc------------CCCEEEEECCCCCHHHHHHHHHHHHhcCCceE
Confidence            3456777777553            368888744  67889999999999999 763


No 39 
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=22.00  E-value=75  Score=23.24  Aligned_cols=23  Identities=9%  Similarity=0.198  Sum_probs=19.3

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~   80 (185)
                      ..+.=+.+.+|+-.||++|||.-
T Consensus        55 LGlDSLd~veLi~~LEe~FgI~I   77 (113)
T 2cgq_A           55 LGFDSLKLFQLITELEDEFDIAI   77 (113)
T ss_dssp             TCCCHHHHHHHHHHHHHHHTCCC
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCc
Confidence            34567889999999999999964


No 40 
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.88  E-value=77  Score=21.71  Aligned_cols=22  Identities=9%  Similarity=0.309  Sum_probs=18.5

Q ss_pred             cCCHHHHHHHHHHHHHHhCCCC
Q 037146           59 CLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        59 ~LtLlE~~eLv~~leekfgv~~   80 (185)
                      .+.=+.+.+|+..|+++|||.-
T Consensus        46 G~DSL~~vel~~~le~~fgi~i   67 (99)
T 2dnw_A           46 GLDSLDQVEIIMAMEDEFGFEI   67 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCC
Confidence            4566788999999999999974


No 41 
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=21.87  E-value=47  Score=22.30  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=16.6

Q ss_pred             hhhcCCCHHHHHHHHHHHHHcCCEE
Q 037146          158 LLKRGVTKDEADKIVAKLKEVGAQV  182 (185)
Q Consensus       158 ~IKe~vsKeeAe~ik~kle~aGA~V  182 (185)
                      ++|++++.++.+..+..+...|++|
T Consensus         8 ~lk~~~~~~~~~~~~~~~~~~gg~i   32 (76)
T 1v5i_B            8 IFKNDVSEDKIRETKDEVIAEGGTI   32 (76)
T ss_dssp             EECTTCCHHHHHHHHHHHHHHTCCC
T ss_pred             EECCCCCHHHHHHHHHHHHhhCCce
Confidence            4566677776666666677666654


No 42 
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=21.75  E-value=77  Score=22.04  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             cCCHHHHHHHHHHHHHHhCCCC
Q 037146           59 CLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        59 ~LtLlE~~eLv~~leekfgv~~   80 (185)
                      .+.=+.+.+|+-.||++|||.-
T Consensus        34 GlDSL~~veLi~~lE~~fgi~i   55 (101)
T 2kw2_A           34 GIDSLDFLDIAFAIDKAFGIKL   55 (101)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCcc
Confidence            5667788999999999999974


No 43 
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.70  E-value=69  Score=24.15  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhh
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEK  154 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~  154 (185)
                      -.++..|+.+|+ +|++|+|.|++++.
T Consensus        60 l~~l~~I~~lr~-~G~sL~eIk~~l~~   85 (148)
T 3gpv_A           60 LKYLEMILCLKN-TGMPIQKIKQFIDW   85 (148)
T ss_dssp             HHHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence            357777777765 69999999999984


No 44 
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=21.03  E-value=64  Score=20.72  Aligned_cols=24  Identities=4%  Similarity=0.131  Sum_probs=19.3

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ..+.=+.+.+|+..|+++||+.-.
T Consensus        37 lG~DSl~~~~l~~~le~~fgi~i~   60 (82)
T 2cnr_A           37 LDVDSLSMVEVVVAAEERFDVKIP   60 (82)
T ss_dssp             SCCCHHHHHHHHHHHHGGGTBCCC
T ss_pred             cCCChHHHHHHHHHHHHHhCCCCC
Confidence            345667788999999999999743


No 45 
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=20.98  E-value=98  Score=23.76  Aligned_cols=29  Identities=28%  Similarity=0.265  Sum_probs=24.4

Q ss_pred             ChhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 037146           47 SEKVASIVDEISCLSLVEVMDLADVVRNKL   76 (185)
Q Consensus        47 s~KV~~Ivd~I~~LtLlE~~eLv~~leekf   76 (185)
                      .-+|...|.+|-+|.|.|+.+||+.. ..+
T Consensus        71 KI~VIK~VR~itgLgLkEAK~lVe~a-~~i   99 (125)
T 2j01_L           71 KLEVIKELRAITGLGLKEAKDLAEKG-GPV   99 (125)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence            34677889999999999999999988 655


No 46 
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=20.59  E-value=1e+02  Score=23.56  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             CChhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 037146           46 PSEKVASIVDEISCLSLVEVMDLADVVRNKL   76 (185)
Q Consensus        46 ~s~KV~~Ivd~I~~LtLlE~~eLv~~leekf   76 (185)
                      ..-+|...|.+|-+|.|.|+.+||+.. ..+
T Consensus        67 ~KI~VIK~VR~itgLgLkEAK~lVe~a-~~i   96 (122)
T 2zjq_5           67 SKINVIKEIRGITGLGLKEAKDMSEKG-GVL   96 (122)
T ss_pred             chHHHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence            334677889999999999999999988 554


No 47 
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=20.39  E-value=61  Score=21.15  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=20.7

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ..+.=+.+.+|+..|+++||+.-.
T Consensus        36 lG~DSL~~vel~~~le~~fgi~i~   59 (83)
T 1or5_A           36 LGYDSLALLETAAVLQQRYGIALT   59 (83)
T ss_dssp             HSCCHHHHHHHHHHHHTTSCCCCS
T ss_pred             hCCCHHHHHHHHHHHHHHHCCccC
Confidence            368888999999999999999653


No 48 
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=20.16  E-value=86  Score=22.15  Aligned_cols=23  Identities=9%  Similarity=0.200  Sum_probs=18.8

Q ss_pred             cCCHHHHHHHHHHHHHHhCCCCC
Q 037146           59 CLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        59 ~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      .+.=+.+.+|+..||++|||.-.
T Consensus        57 GlDSL~~veLi~~lE~~fgi~i~   79 (101)
T 4dxe_H           57 GADSLDIAELVMELEDEFGTEIP   79 (101)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCcHHHHHHHHHHHHHHCCCCC
Confidence            44557889999999999999743


No 49 
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=20.12  E-value=83  Score=23.25  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             hcCCHHHHHHHHHHHHHHhCCCC
Q 037146           58 SCLSLVEVMDLADVVRNKLGIKE   80 (185)
Q Consensus        58 ~~LtLlE~~eLv~~leekfgv~~   80 (185)
                      .++.-+.+-||+-.++++||+..
T Consensus        44 LglDSLd~VeLVm~lE~~fGi~i   66 (102)
T 2l9f_A           44 LHMSSITVGQLVNEAARAMGLSA   66 (102)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTCST
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCC
Confidence            35677889999999999999974


No 50 
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.01  E-value=86  Score=23.87  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=20.8

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhhc
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEKV  155 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~~  155 (185)
                      -.++..|+.+|+ +|++|+|.|++++..
T Consensus        54 l~~l~~I~~lr~-~G~sl~eI~~~l~~~   80 (154)
T 2zhg_A           54 LRYVAIIKIAQR-IGIPLATIGEAFGVL   80 (154)
T ss_dssp             HHHHHHHHHHHH-HTCCHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence            356777777775 599999999999753


Done!