Query 037148
Match_columns 463
No_of_seqs 248 out of 601
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1u_A RNA polymerase-associat 100.0 6.2E-33 2.1E-37 248.8 7.0 123 298-424 6-137 (137)
2 2bze_A KIAA0252 protein; human 100.0 1.5E-32 5.3E-37 250.6 8.8 121 303-426 24-153 (153)
3 1v32_A AT5G08430, hypothetical 100.0 1.3E-31 4.4E-36 229.5 8.8 91 152-242 6-96 (101)
4 1v31_A Hypothetical protein RA 99.9 1.3E-24 4.3E-29 183.4 5.8 76 162-243 14-89 (93)
5 1uhr_A SWI/SNF related, matrix 99.9 1.2E-24 4.1E-29 183.6 4.2 76 162-243 14-89 (93)
6 4gne_A Histone-lysine N-methyl 97.3 0.0001 3.6E-09 63.4 2.5 41 1-41 55-95 (107)
7 3dac_M MDM4 protein; MDMX, MDM 96.8 0.0014 5E-08 57.8 5.8 77 163-240 28-108 (130)
8 3fea_A MDM4 protein; HDMX, HDM 96.5 0.0028 9.6E-08 53.9 4.8 75 163-238 19-97 (100)
9 2z5s_M MDM4 protein, zebrafish 96.3 0.007 2.4E-07 53.9 6.8 73 163-236 27-100 (140)
10 1ycq_A MDM2, MDM2; anti-oncoge 96.3 0.01 3.5E-07 51.0 7.3 75 163-238 15-90 (107)
11 1z1m_A Ubiquitin-protein ligas 96.2 0.0067 2.3E-07 52.9 5.9 76 163-239 31-107 (119)
12 2axi_A Ubiquitin-protein ligas 95.6 0.0098 3.4E-07 51.6 4.4 75 163-238 15-90 (115)
13 1tot_A CREB-binding protein; z 78.6 0.45 1.5E-05 35.6 0.2 28 5-32 7-37 (52)
14 2e5r_A Dystrobrevin alpha; ZZ 78.5 0.76 2.6E-05 35.6 1.5 29 5-33 12-45 (63)
15 2fc7_A ZZZ3 protein; structure 73.8 1.5 5.3E-05 35.6 2.2 27 6-32 23-57 (82)
16 2dip_A Zinc finger SWIM domain 73.5 1.2 4E-05 37.6 1.4 29 5-33 32-65 (98)
17 2fk4_A Protein E6; zinc bindin 68.7 1.1 3.8E-05 36.0 0.2 34 17-50 26-65 (75)
18 2rm4_A CG6311-PB, DM EDC3; enh 62.1 9.9 0.00034 32.2 4.7 57 328-390 7-78 (103)
19 1vfy_A Phosphatidylinositol-3- 57.7 4.2 0.00014 31.9 1.7 49 5-55 12-70 (73)
20 1xwh_A Autoimmune regulator; P 56.6 4.4 0.00015 31.1 1.6 45 5-50 9-54 (66)
21 2l5u_A Chromodomain-helicase-D 55.9 6 0.00021 30.0 2.3 45 5-50 12-57 (61)
22 1bi6_H Bromelain inhibitor VI; 55.9 2.5 8.7E-05 29.5 0.1 13 15-27 2-15 (41)
23 2yql_A PHD finger protein 21A; 55.7 4.4 0.00015 30.1 1.4 45 5-50 10-55 (56)
24 2zet_C Melanophilin; complex, 55.5 5.4 0.00019 36.0 2.3 49 3-55 67-121 (153)
25 1z2q_A LM5-1; membrane protein 55.4 4.6 0.00016 32.5 1.6 48 5-52 22-77 (84)
26 3o36_A Transcription intermedi 55.2 3.8 0.00013 37.2 1.2 45 5-50 5-50 (184)
27 2puy_A PHD finger protein 21A; 54.1 13 0.00043 27.9 3.8 48 5-53 6-54 (60)
28 2l43_A N-teminal domain from h 51.4 7.9 0.00027 31.6 2.4 44 5-51 26-75 (88)
29 2ro1_A Transcription intermedi 50.8 5.1 0.00017 36.9 1.3 46 5-51 3-49 (189)
30 1mm2_A MI2-beta; PHD, zinc fin 50.2 9 0.00031 29.0 2.4 45 5-50 10-55 (61)
31 2lbm_A Transcriptional regulat 49.6 5.3 0.00018 35.7 1.2 27 5-31 64-91 (142)
32 3u5n_A E3 ubiquitin-protein li 49.2 5 0.00017 37.2 1.0 45 5-50 8-53 (207)
33 1x4u_A Zinc finger, FYVE domai 48.2 15 0.00051 29.4 3.6 49 5-53 15-77 (84)
34 1wfk_A Zinc finger, FYVE domai 45.9 7.7 0.00026 31.6 1.5 51 5-55 10-67 (88)
35 2ysm_A Myeloid/lymphoid or mix 45.4 6.2 0.00021 32.9 0.9 45 4-49 7-55 (111)
36 3pfq_A PKC-B, PKC-beta, protei 45.0 4.4 0.00015 43.7 -0.1 48 5-52 49-123 (674)
37 1y02_A CARP2, FYVE-ring finger 44.2 13 0.00043 32.3 2.7 43 5-52 20-67 (120)
38 2cu8_A Cysteine-rich protein 2 43.7 14 0.00048 28.1 2.7 45 4-51 9-67 (76)
39 1x6a_A LIMK-2, LIM domain kina 42.1 18 0.0006 27.8 3.0 47 5-53 16-75 (81)
40 2dar_A PDZ and LIM domain prot 42.0 17 0.00059 28.6 3.1 48 3-53 24-83 (90)
41 2yqq_A Zinc finger HIT domain- 41.4 10 0.00034 29.0 1.4 24 4-27 12-35 (56)
42 2d8v_A Zinc finger FYVE domain 40.8 8.9 0.0003 30.3 1.1 27 6-32 10-37 (67)
43 2d8x_A Protein pinch; LIM doma 40.6 20 0.00069 26.7 3.1 47 3-52 4-62 (70)
44 2lri_C Autoimmune regulator; Z 39.7 7.7 0.00026 30.1 0.6 43 6-49 14-57 (66)
45 2ku3_A Bromodomain-containing 39.3 17 0.00057 28.6 2.5 43 5-50 17-65 (71)
46 2jun_A Midline-1; B-BOX, TRIM, 39.0 9.2 0.00031 30.8 1.0 28 5-32 4-35 (101)
47 1fp0_A KAP-1 corepressor; PHD 38.7 5.7 0.00019 32.9 -0.4 46 5-51 26-72 (88)
48 2do5_A Splicing factor 3B subu 38.6 68 0.0023 24.2 5.5 44 155-200 5-48 (58)
49 1joc_A EEA1, early endosomal a 38.2 13 0.00044 32.1 1.8 45 5-51 70-122 (125)
50 2co8_A NEDD9 interacting prote 37.5 12 0.0004 29.3 1.4 46 3-50 14-73 (82)
51 3ql9_A Transcriptional regulat 37.2 11 0.00037 33.3 1.2 28 5-32 58-86 (129)
52 3t7l_A Zinc finger FYVE domain 36.9 10 0.00034 31.0 0.9 52 6-57 22-79 (90)
53 2d8z_A Four and A half LIM dom 36.6 30 0.001 25.6 3.5 47 3-52 4-62 (70)
54 2yw8_A RUN and FYVE domain-con 35.8 13 0.00044 29.7 1.4 47 5-53 20-74 (82)
55 1x68_A FHL5 protein; four-and- 35.3 25 0.00084 26.8 2.8 43 5-50 6-64 (76)
56 3zyq_A Hepatocyte growth facto 34.4 13 0.00044 35.1 1.3 29 5-33 165-198 (226)
57 2egq_A FHL1 protein; LIM domai 33.0 25 0.00085 26.6 2.5 43 5-50 16-75 (77)
58 1a7i_A QCRP2 (LIM1); LIM domai 32.9 26 0.00088 26.9 2.6 47 3-52 6-65 (81)
59 2cur_A Skeletal muscle LIM-pro 32.6 41 0.0014 24.9 3.7 47 3-52 4-62 (69)
60 2d8y_A Eplin protein; LIM doma 32.4 25 0.00084 27.8 2.5 47 3-52 14-73 (91)
61 2kwl_A ACP, acyl carrier prote 32.2 30 0.001 26.5 2.9 59 180-241 4-62 (84)
62 1x61_A Thyroid receptor intera 32.1 42 0.0014 24.9 3.7 48 3-53 4-65 (72)
63 1zbd_B Rabphilin-3A; G protein 32.0 16 0.00054 32.2 1.4 51 3-54 54-110 (134)
64 1wyh_A SLIM 2, skeletal muscle 31.8 36 0.0012 25.2 3.3 46 4-52 5-64 (72)
65 1x64_A Alpha-actinin-2 associa 31.1 31 0.001 27.1 2.8 46 3-51 24-81 (89)
66 1wev_A Riken cDNA 1110020M19; 30.7 17 0.00058 29.5 1.3 54 5-58 17-79 (88)
67 1v6g_A Actin binding LIM prote 30.6 12 0.00042 28.8 0.4 46 6-53 17-74 (81)
68 2eqe_A Tumor necrosis factor, 30.6 12 0.00041 27.6 0.3 17 33-49 23-39 (48)
69 1x62_A C-terminal LIM domain p 29.7 21 0.00072 27.4 1.6 48 3-53 14-73 (79)
70 2e6r_A Jumonji/ARID domain-con 29.1 24 0.00082 28.8 1.9 47 5-52 17-67 (92)
71 1x4l_A Skeletal muscle LIM-pro 29.1 36 0.0012 25.4 2.8 46 3-51 4-65 (72)
72 1nyp_A Pinch protein; LIM doma 28.7 33 0.0011 25.2 2.5 45 4-51 5-61 (66)
73 1wig_A KIAA1808 protein; LIM d 28.1 13 0.00046 28.3 0.2 49 5-55 6-66 (73)
74 2w6a_A ARF GTPase-activating p 27.1 1.9E+02 0.0066 22.3 6.4 49 383-443 4-52 (63)
75 2e72_A POGO transposable eleme 27.0 14 0.00047 27.6 0.1 22 3-24 11-39 (49)
76 1x63_A Skeletal muscle LIM-pro 26.8 46 0.0016 25.3 3.1 45 5-52 16-74 (82)
77 1iml_A CRIP, cysteine rich int 26.2 40 0.0014 25.5 2.6 44 6-52 2-59 (76)
78 1weo_A Cellulose synthase, cat 26.2 19 0.00064 30.1 0.8 28 3-30 15-50 (93)
79 2ri7_A Nucleosome-remodeling f 25.4 8 0.00027 34.5 -1.8 47 5-52 9-60 (174)
80 2uzg_A Ubiquitin carboxyl-term 24.3 37 0.0013 28.0 2.2 47 4-51 25-87 (97)
81 2cor_A Pinch protein; LIM doma 24.1 48 0.0016 25.5 2.8 43 5-51 16-70 (79)
82 1r79_A Diacylglycerol kinase, 23.7 28 0.00095 28.4 1.3 29 5-33 39-74 (84)
83 1f80_D Acyl carrier protein; t 22.6 41 0.0014 25.4 2.0 59 180-241 2-60 (81)
84 2rbd_A BH2358 protein; putativ 22.1 41 0.0014 29.8 2.3 73 386-459 95-167 (171)
85 2jne_A Hypothetical protein YF 22.1 27 0.00091 29.7 0.9 48 5-52 33-91 (101)
86 1b8t_A Protein (CRP1); LIM dom 20.8 45 0.0015 30.0 2.3 45 6-53 117-174 (192)
87 2g45_A Ubiquitin carboxyl-term 20.7 42 0.0014 29.3 2.0 25 3-28 34-59 (129)
88 2k16_A Transcription initiatio 20.5 38 0.0013 26.1 1.5 45 6-51 20-68 (75)
89 2kwj_A Zinc finger protein DPF 20.3 52 0.0018 27.6 2.4 48 6-54 60-111 (114)
90 1hlv_A CENP-B, major centromer 20.2 1.4E+02 0.0048 24.4 5.1 35 391-426 78-112 (131)
91 2iyb_E Testin, TESS, TES; LIM 20.2 32 0.0011 25.4 1.0 30 18-50 32-62 (65)
92 2dlo_A Thyroid receptor-intera 20.2 57 0.0019 24.9 2.4 46 4-51 15-72 (81)
93 2ffw_A Midline-1; B-BOX, ring 20.2 29 0.001 27.3 0.7 27 5-31 31-61 (78)
No 1
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=99.97 E-value=6.2e-33 Score=248.78 Aligned_cols=123 Identities=21% Similarity=0.327 Sum_probs=108.6
Q ss_pred cceeecccccchhhhchHHHHHHhhChhHHHhHhheeEEEEEeCCCCccCccceeEEEEeeEEeec-------ccchhhh
Q 037148 298 CFASVVPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTS-------VNAEILL 370 (463)
Q Consensus 298 ~~aaI~~~nIn~irL~Rs~~~~l~~dP~~F~~kvvGsFVRI~ig~~~~~~k~~YRL~qV~Gi~k~~-------~~t~~~L 370 (463)
.+.+ +.+||++|||+|+++++|++.| +|++.|+||||||+||+++ ++++||||||+||.++. ++||+.|
T Consensus 6 ~~v~-~l~dl~~i~L~R~~l~~~~~~P-~Fe~~V~GcFVRv~ig~~~--~~~~Yrl~qI~gv~~~~k~Y~l~~~~T~~~L 81 (137)
T 3u1u_A 6 QPVS-LPEELNRVRLSRHKLERWCHMP-FFAKTVTGCFVRIGIGNHN--SKPVYRVAEITGVVETAKVYQLGGTRTNKGL 81 (137)
T ss_dssp SBCC-SHHHHHTTBCCHHHHHHHTTST-THHHHHTTCEEEEEEEC------CEEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCC-CHHHhcceEEEHHHHHHHhcCC-ChhHheEEEEEEEEeCCCC--CCccEEEEEEEEEEecCcccccCCceeeEEE
Confidence 3444 7899999999999999999999 6999999999999999997 35999999999998754 6678777
Q ss_pred hh-CCC-ceeEeeeeccCCCCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Q 037148 371 EL-SDR-VKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHED 424 (463)
Q Consensus 371 ~~-~~~-~k~~~i~~iSn~~FTE~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~ 424 (463)
.+ +|. .++|+|++|||++|||+||++|++.|.++++++||+.+|++|+++||++
T Consensus 82 ~l~~g~~~r~~~~~~vSN~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a 137 (137)
T 3u1u_A 82 QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA 137 (137)
T ss_dssp EEEETTEEEEEEGGGBCSSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHTCCC
T ss_pred EEEeCCcceEEEeeeecCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhC
Confidence 77 455 6999999999999999999999999999999999999999999999864
No 2
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=99.97 E-value=1.5e-32 Score=250.62 Aligned_cols=121 Identities=21% Similarity=0.347 Sum_probs=110.9
Q ss_pred cccccchhhhchHHHHHHhhChhHHHhHhheeEEEEEeCCCCccCccceeEEEEeeEEeec-------ccchhhhhhC-C
Q 037148 303 VPKNIKLVYLRKSLVEELSKQLETFEAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTS-------VNAEILLELS-D 374 (463)
Q Consensus 303 ~~~nIn~irL~Rs~~~~l~~dP~~F~~kvvGsFVRI~ig~~~~~~k~~YRL~qV~Gi~k~~-------~~t~~~L~~~-~ 374 (463)
+.+||++|||+|++|++|++.| .|+++|+||||||+||++.+ +++||||||+|+.++. ++|++.|.+. |
T Consensus 24 ~l~di~~irL~Rs~l~~~~~~P-~Fe~~V~GcFVRV~ig~~~~--~~~YRl~qI~gv~~~~k~Y~l~~~~T~~~L~l~~g 100 (153)
T 2bze_A 24 LPEELNRVRLSRHKLERWCHMP-FFAKTVTGCFVRIGIGNHNS--KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHG 100 (153)
T ss_dssp CHHHHHHSEECHHHHHHHSSSS-SCHHHHTTCEEEEESSTTSS--SCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred CHHHhhheEEEHHHHHHHhcCC-chhHheEEEEEEEEeCCCCC--CccEEEEEEEeEEecCcccccCCcccceEEEEEEC
Confidence 6789999999999999999999 59999999999999998643 5899999999998765 5788888774 4
Q ss_pred C-ceeEeeeeccCCCCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh
Q 037148 375 R-VKWVPICNLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDIT 426 (463)
Q Consensus 375 ~-~k~~~i~~iSn~~FTE~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~i~ 426 (463)
. .++|+|++|||++|||+||++|++.|+.+++++||+.+|++|+++|+++++
T Consensus 101 ~~~r~~~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~a~n 153 (153)
T 2bze_A 101 NDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN 153 (153)
T ss_dssp SCEEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred CcceEEEeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 4 689999999999999999999999999999999999999999999999975
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.97 E-value=1.3e-31 Score=229.46 Aligned_cols=91 Identities=41% Similarity=0.740 Sum_probs=87.5
Q ss_pred cccccccccCCCHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHhhhhCCCcccccchHHH
Q 037148 152 KSSRKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKL 231 (463)
Q Consensus 152 ~~k~~~~~gw~S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD~kL~~LFg~~rv~~~ei~kl 231 (463)
.+|+.+|+||+||+|++||+|||.+|++++||++|+++||+|||+||||||.||+.|+||++|++|||+++|+||+|+++
T Consensus 6 ~~~~~~~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~kl 85 (101)
T 1v32_A 6 SGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDL 85 (101)
T ss_dssp CSSCCSSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHH
T ss_pred CCCcceecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHH
Confidence 45789999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCcccc
Q 037148 232 LTIHLAENLEL 242 (463)
Q Consensus 232 L~~Hl~~~~~~ 242 (463)
|++||.++++.
T Consensus 86 L~~Hl~~~~e~ 96 (101)
T 1v32_A 86 LEKHYKENQDS 96 (101)
T ss_dssp HHHHSCSCCCC
T ss_pred HHHHcCccccc
Confidence 99999998764
No 4
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.90 E-value=1.3e-24 Score=183.44 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=73.3
Q ss_pred CCHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHhhhhCCCcccccchHHHHhcccCCccc
Q 037148 162 GSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLE 241 (463)
Q Consensus 162 ~S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD~kL~~LFg~~rv~~~ei~klL~~Hl~~~~~ 241 (463)
+||+|++|| |. .++||++|+++||+|||+||||||.+|+.|+||++|++|||+++|.||+|+++|++||.+++|
T Consensus 14 lS~~La~~l---G~---~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1v31_A 14 LSTALMDVL---GI---EVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPP 87 (93)
T ss_dssp CCHHHHHHS---CC---SEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCCC
T ss_pred cCHHHHHHH---CC---CccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 899999999 86 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 037148 242 LL 243 (463)
Q Consensus 242 ~s 243 (463)
+.
T Consensus 88 i~ 89 (93)
T 1v31_A 88 SG 89 (93)
T ss_dssp SS
T ss_pred ee
Confidence 64
No 5
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.90 E-value=1.2e-24 Score=183.65 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHhhhhCCCcccccchHHHHhcccCCccc
Q 037148 162 GSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLE 241 (463)
Q Consensus 162 ~S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD~kL~~LFg~~rv~~~ei~klL~~Hl~~~~~ 241 (463)
+||+|++|| |. .++||++|+++||+|||+||||||.+|+.|+||++|++|||+++|+||+|+++|++||.+++|
T Consensus 14 lS~~La~~l---G~---~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 14 LDPRLARLL---GI---HTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp ECTTHHHHT---CC---SEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred cCHHHHHHH---CC---CccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 799999999 86 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 037148 242 LL 243 (463)
Q Consensus 242 ~s 243 (463)
+.
T Consensus 88 I~ 89 (93)
T 1uhr_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred ee
Confidence 64
No 6
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=97.26 E-value=0.0001 Score=63.45 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=36.7
Q ss_pred CCCccccccCCCCCceeeecCCcccccccccCCeEEEEeCC
Q 037148 1 MTDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGN 41 (463)
Q Consensus 1 ~~gwH~C~~C~k~~~~~C~~C~~s~C~~C~~~~~f~~vrgn 41 (463)
+|-||.|..|++++.|+|..||.|+|..|+.++-|...+..
T Consensus 55 ~Cp~c~C~~C~k~~~~~C~~Cp~sfC~~c~~g~l~~~~~~~ 95 (107)
T 4gne_A 55 ECPWHQCDECSSAAVSFCEFCPHSFCKDHEKGALVPSALEG 95 (107)
T ss_dssp CCGGGBCTTTCSBCCEECSSSSCEECTTTCTTSCEECTTTT
T ss_pred ECCCCCCCcCCCCCCcCcCCCCcchhhhccCCcceecCCCC
Confidence 48899999999999999999999999999999988766443
No 7
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.84 E-value=0.0014 Score=57.81 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=69.5
Q ss_pred CHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHhhhhCCCcccccc---hHHHHhcccCC
Q 037148 163 SRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD-ARLKALFGRKSVNKNS---IPKLLTIHLAE 238 (463)
Q Consensus 163 S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD-~kL~~LFg~~rv~~~e---i~klL~~Hl~~ 238 (463)
-++|..+|.+.|... ...|..+|...|-+||-.+.|.||.+...|.|- +.|..+||++++.+-+ +...|.++|.+
T Consensus 28 k~~lL~iLq~aGA~~-dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 28 RAPLLQILKVAGAQE-EVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp CHHHHHHHHHTTCCC-SSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHhccCc-ceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheec
Confidence 478999999889764 789999999999999999999999999999996 7899999999999999 99999999886
Q ss_pred cc
Q 037148 239 NL 240 (463)
Q Consensus 239 ~~ 240 (463)
..
T Consensus 107 ~~ 108 (130)
T 3dac_M 107 LN 108 (130)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 8
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.46 E-value=0.0028 Score=53.88 Aligned_cols=75 Identities=20% Similarity=0.410 Sum_probs=66.6
Q ss_pred CHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHhhhhCCCccccc---chHHHHhcccCC
Q 037148 163 SRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD-ARLKALFGRKSVNKN---SIPKLLTIHLAE 238 (463)
Q Consensus 163 S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD-~kL~~LFg~~rv~~~---ei~klL~~Hl~~ 238 (463)
-++|..+|.+.|... ...|..+|...+-+||-.+.|.||.+...|.|. +-|-.+||++++.+- .+...|.+||..
T Consensus 19 k~~lL~iLq~aGA~~-d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 19 KLPLLKILHAAGAQG-EMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp CHHHHHHHHHTTCCS-SCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhccCc-ceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 478999999989764 889999999999999999999999999999996 789999999999887 577788877754
No 9
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.34 E-value=0.007 Score=53.86 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=63.5
Q ss_pred CHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHhhhhCCCcccccchHHHHhccc
Q 037148 163 SRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD-ARLKALFGRKSVNKNSIPKLLTIHL 236 (463)
Q Consensus 163 S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD-~kL~~LFg~~rv~~~ei~klL~~Hl 236 (463)
-|+|..||..-|.. ....|.-+|+-.|-+||-.+.|.||.+..+|.|. +.|-.|||++++.+-+...+...|.
T Consensus 27 k~~LLkiLq~aGA~-~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~ 100 (140)
T 2z5s_M 27 RAPLLQILKVAGAQ-EEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLK 100 (140)
T ss_dssp CHHHHHHHHHTTCC-CSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHH
T ss_pred cHHHHHHHHHhCcc-cceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 47999999988875 4789999999999999999999999999999997 7779999999999988765554443
No 10
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.28 E-value=0.01 Score=50.98 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=65.5
Q ss_pred CHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHhhhhCCCcccccchHHHHhcccCC
Q 037148 163 SRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD-ARLKALFGRKSVNKNSIPKLLTIHLAE 238 (463)
Q Consensus 163 S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD-~kL~~LFg~~rv~~~ei~klL~~Hl~~ 238 (463)
.++|..+|...|... ...|.-+|+-.|-+||-.+.|.||.+...|.|. +.|-.+||++++.+-+-..+...|...
T Consensus 15 k~~LLklL~~~GA~~-~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 15 TPLLLSLLKSAGAQK-ETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CHHHHHHHHHTTCCC-SCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHhcccc-ceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 578999999999763 789999999999999999999999999999997 777999999999998877666555443
No 11
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.22 E-value=0.0067 Score=52.94 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=66.1
Q ss_pred CHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHhhhhCCCcccccchHHHHhcccCCc
Q 037148 163 SRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD-ARLKALFGRKSVNKNSIPKLLTIHLAEN 239 (463)
Q Consensus 163 S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD-~kL~~LFg~~rv~~~ei~klL~~Hl~~~ 239 (463)
.++|..+|...|..- ...|.-+|+..|-+||-.+.|.||.+...|.|. +.|-.|||++++.+-+-..+...|....
T Consensus 31 k~~LLkiLq~aGA~~-~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 31 KPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp STTSHHHHHHHTCCC-SCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred cHHHHHHHHHhcccc-ceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 467889999889764 789999999999999999999999999999997 7779999999999998777776665433
No 12
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.63 E-value=0.0098 Score=51.59 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=65.8
Q ss_pred CHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHhhhhCCCcccccchHHHHhcccCC
Q 037148 163 SRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLFHPERKRKIICD-ARLKALFGRKSVNKNSIPKLLTIHLAE 238 (463)
Q Consensus 163 S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD-~kL~~LFg~~rv~~~ei~klL~~Hl~~ 238 (463)
.++|..+|...|... ...|.-+|+--+-+||-.+.|.||.+...|.|. +.|-.|||++++.+-+-..+...|...
T Consensus 15 k~~LLklLq~~GA~~-~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (115)
T 2axi_A 15 KPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 90 (115)
T ss_dssp CHHHHHHHHHTTCCC-SCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHhcccc-ceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 578999999999763 789999999999999999999999999999997 777999999999998877776655543
No 13
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=78.56 E-value=0.45 Score=35.63 Aligned_cols=28 Identities=21% Similarity=0.642 Sum_probs=23.4
Q ss_pred cccccCCCC--CceeeecCC-cccccccccC
Q 037148 5 HACYECGKA--PKFYCLCSP-KAICGHCICD 32 (463)
Q Consensus 5 H~C~~C~k~--~~~~C~~C~-~s~C~~C~~~ 32 (463)
-.|..|++. ..|+|..|+ |.||..|...
T Consensus 7 ~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 7 YTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp EEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 358888875 679999999 9999999764
No 14
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.50 E-value=0.76 Score=35.63 Aligned_cols=29 Identities=17% Similarity=0.540 Sum_probs=24.4
Q ss_pred cccccCCCC----CceeeecCC-cccccccccCC
Q 037148 5 HACYECGKA----PKFYCLCSP-KAICGHCICDA 33 (463)
Q Consensus 5 H~C~~C~k~----~~~~C~~C~-~s~C~~C~~~~ 33 (463)
..|..|++. ..|+|..|| |-||..|+...
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 369999986 679999999 99999998754
No 15
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=73.83 E-value=1.5 Score=35.62 Aligned_cols=27 Identities=26% Similarity=0.682 Sum_probs=23.2
Q ss_pred ccccCCCC----CceeeecCC----cccccccccC
Q 037148 6 ACYECGKA----PKFYCLCSP----KAICGHCICD 32 (463)
Q Consensus 6 ~C~~C~k~----~~~~C~~C~----~s~C~~C~~~ 32 (463)
.|..|++. ..|+|..|| |-||..|...
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhC
Confidence 79999973 569999999 8999999865
No 16
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=73.49 E-value=1.2 Score=37.57 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=24.2
Q ss_pred cccccCCCC----CceeeecCC-cccccccccCC
Q 037148 5 HACYECGKA----PKFYCLCSP-KAICGHCICDA 33 (463)
Q Consensus 5 H~C~~C~k~----~~~~C~~C~-~s~C~~C~~~~ 33 (463)
..|..|+.. ..|+|..|| |-||..|+...
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 459999974 569999999 99999997654
No 17
>2fk4_A Protein E6; zinc binding domain, oncoprotein, metal binding protein; NMR {Human papillomavirus type 16} SCOP: g.90.1.1 PDB: 2ljz_A
Probab=68.73 E-value=1.1 Score=36.03 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=29.4
Q ss_pred eeecCCccccc-----ccccCCeEEEEeCC-cccchhhhH
Q 037148 17 YCLCSPKAICG-----HCICDAEFAIVKGN-KGLCSGCLE 50 (463)
Q Consensus 17 ~C~~C~~s~C~-----~C~~~~~f~~vrgn-kGfC~~C~~ 50 (463)
+|+.|-.-|+. .|.....|..|||+ +|.|.+|..
T Consensus 26 RC~~C~k~L~~~EK~~~~~~~~~Fh~VRg~WRG~C~~C~~ 65 (75)
T 2fk4_A 26 RCINCQKPLSPEEKQRHLDKKQRFHNIRGRWTGRCMSCSR 65 (75)
T ss_dssp CCSSSCCCCCHHHHHHHHHHCSCEEEETTEEESHHHHHSC
T ss_pred EhHHcCCcCCHHHHHHHHHCCCCEEEECCeEEEECcccCC
Confidence 58999888886 37788999999998 999999965
No 18
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=62.07 E-value=9.9 Score=32.17 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=37.0
Q ss_pred HhHhheeEEEEEeCCCCccCccceeEEEEeeEEeec---------------ccchhhhhhCCCceeEeeeeccCCCCC
Q 037148 328 EAKVMGSFVRVRSDPNDYLQKNSHQLVQVSGIHKTS---------------VNAEILLELSDRVKWVPICNLSNDDFS 390 (463)
Q Consensus 328 ~~kvvGsFVRI~ig~~~~~~k~~YRL~qV~Gi~k~~---------------~~t~~~L~~~~~~k~~~i~~iSn~~FT 390 (463)
+++|+||+|-|.+++.=+ +|| ++|..|.... .+.++.|.+.. .+++.|+...++|..
T Consensus 7 ~edwiG~~VSI~C~d~LG----VyQ-G~I~~V~~~~ItL~kaFrNGiplk~~~~EVtLsa~D-I~~L~IIe~~~~~~~ 78 (103)
T 2rm4_A 7 DQDWIGCAVSIACDEVLG----VFQ-GLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTD-IRSIDLIEPAKQDLD 78 (103)
T ss_dssp SGGGTTCEEEEEECTTTC----EEE-EEEEEEETTEEEEEEEEETTEECSCSSSCEEEETTT-EEEEEEEECCCCCCC
T ss_pred ccceeceEEEEeeCCcce----Eee-EEEEEcccceeEEhhhhhcCcCcCCCCceEEEEecc-hhheeeecccccccc
Confidence 578999999999987665 576 4555554332 22333444322 467888888887764
No 19
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.69 E-value=4.2 Score=31.85 Aligned_cols=49 Identities=24% Similarity=0.494 Sum_probs=35.5
Q ss_pred cccccCCCCC-----ceeeecCCcccccccccCCeEEEEe--C---CcccchhhhHHHHHH
Q 037148 5 HACYECGKAP-----KFYCLCSPKAICGHCICDAEFAIVK--G---NKGLCSGCLELVLLI 55 (463)
Q Consensus 5 H~C~~C~k~~-----~~~C~~C~~s~C~~C~~~~~f~~vr--g---nkGfC~~C~~~~~lI 55 (463)
+.|..|++.= .++|..|+..+|..|.... +.+- | .--.|..|...+-.|
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~--~~lp~~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS--IPLPDLGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE--EEEGGGTEEEEEEECHHHHHHHHHH
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe--EEcccCCCCCCCEECHHHHHHHHHH
Confidence 5799999864 4789999999999998643 3331 2 235699998876544
No 20
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.60 E-value=4.4 Score=31.14 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=34.4
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
-.|..|+.....+ |-.|+.++.-.|+...- ..|-...=||..|..
T Consensus 9 ~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl-~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 9 DECAVCRDGGELICCDGCPRAFHLACLSPPL-REIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSBSSSSCCSSCEECSSCCCEECTTTSSSCC-SSCCSSCCCCHHHHH
T ss_pred CCCccCCCCCCEEEcCCCChhhcccccCCCc-CcCCCCCeECccccC
Confidence 4799999888776 89999999999998521 112345789999964
No 21
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=55.91 E-value=6 Score=29.98 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=35.2
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
-+|..|++....+ |-.|+.+++-.|+...- ..+-...=||..|.+
T Consensus 12 ~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l-~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 12 DYCEVCQQGGEIILCDTCPRAYHMVCLDPDM-EKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCTTTSCCSSEEECSSSSCEEEHHHHCTTC-CSCCCSSCCCTTGGG
T ss_pred CCCccCCCCCcEEECCCCChhhhhhccCCCC-CCCCCCceECccccc
Confidence 4799999888777 89999999999998731 123456789999964
No 22
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=55.89 E-value=2.5 Score=29.54 Aligned_cols=13 Identities=23% Similarity=0.848 Sum_probs=9.4
Q ss_pred ceeeecCC-ccccc
Q 037148 15 KFYCLCSP-KAICG 27 (463)
Q Consensus 15 ~~~C~~C~-~s~C~ 27 (463)
.|.|||=. ||-|+
T Consensus 2 eykcyctdtysdcp 15 (41)
T 1bi6_H 2 EYKCYCTDTYSDCP 15 (41)
T ss_dssp CSSCEECCCCSSCC
T ss_pred cceEEeeccccCCc
Confidence 47788654 88887
No 23
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.68 E-value=4.4 Score=30.06 Aligned_cols=45 Identities=16% Similarity=0.419 Sum_probs=33.9
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
.+|..|++..... |-.|+.+++-.|+...- ..|-...=||..|.+
T Consensus 10 ~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl-~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPL-KTIPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCSSCCEECSSSSCEECSSSSSSCC-CSCCCSSCCCHHHHC
T ss_pred CCCccCCCCCeEEEcCCCCcceECccCCCCc-CCCCCCceEChhhhC
Confidence 4699999888766 89999999999998531 113345778999853
No 24
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.46 E-value=5.4 Score=35.97 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=38.1
Q ss_pred CccccccCCCC------CceeeecCCcccccccccCCeEEEEeCCcccchhhhHHHHHH
Q 037148 3 DLHACYECGKA------PKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLI 55 (463)
Q Consensus 3 gwH~C~~C~k~------~~~~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~lI 55 (463)
+-+.|..|.++ +.-.|..|.+.||..|-- |. -+.+.-+|.-|.+...+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~---~~-~~~~~W~C~vC~k~rel~ 121 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH---AH-PEEQGWLCDPCHLARVVK 121 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE---CC-SSSSSCEEHHHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc---cc-CCCCcEeeHHHHHHHHHH
Confidence 45789999996 556699999999999982 21 245678999999886544
No 25
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.43 E-value=4.6 Score=32.52 Aligned_cols=48 Identities=23% Similarity=0.599 Sum_probs=34.3
Q ss_pred cccccCCCC-----CceeeecCCcccccccccCCeEEEEeC---CcccchhhhHHH
Q 037148 5 HACYECGKA-----PKFYCLCSPKAICGHCICDAEFAIVKG---NKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k~-----~~~~C~~C~~s~C~~C~~~~~f~~vrg---nkGfC~~C~~~~ 52 (463)
..|..|++. -.++|..|...+|..|......+.-.| .-=.|..|...+
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 469999985 347899999999999987643221111 124899998765
No 26
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=55.19 E-value=3.8 Score=37.19 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=34.1
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
..|..|++++... |-.|+.+++-.|+...-- .+-...-+|..|..
T Consensus 5 ~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~-~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 5 DWCAVCQNGGELLCCEKCPKVFHLSCHVPTLT-NFPSGEWICTFCRD 50 (184)
T ss_dssp SSCTTTCCCSSCEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSC
T ss_pred CccccCCCCCeeeecCCCCcccCccccCCCCC-CCCCCCEECccccC
Confidence 5799999988876 899999999999865321 22234579999964
No 27
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=54.13 E-value=13 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.420 Sum_probs=36.4
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhHHHH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~ 53 (463)
-.|..|++..... |-.|+.++.-.|+...- ..+-...=||..|..-..
T Consensus 6 ~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl-~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPL-KTIPKGMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCCSSCEECSSSSCEECGGGSSSCC-SSCCCSCCCCHHHHHHHH
T ss_pred CCCcCCCCCCcEEEcCCCCcCEECCcCCCCc-CCCCCCceEChhccChhh
Confidence 4799999888766 89999999999999531 113345789999976544
No 28
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.39 E-value=7.9 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=35.3
Q ss_pred cccccCCCCC-----ce-eeecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 5 HACYECGKAP-----KF-YCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 5 H~C~~C~k~~-----~~-~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
..|..|+... .. .|-.|+.++.-.|+.-.. |-...-||..|..-
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 5799999875 33 399999999999999763 55568999999753
No 29
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=50.78 E-value=5.1 Score=36.92 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=35.2
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
..|..|++..... |-.|+.+++-.|+...-- .+....-+|..|...
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS-SCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcc-cCCCCCCCCcCccCC
Confidence 5799999988876 899999999999975311 233456799999643
No 30
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=50.15 E-value=9 Score=29.00 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=33.8
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
-+|..|+...... |-.|+.+++-.|+...- ..|-...=||..|..
T Consensus 10 ~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl-~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 10 EFCRVCKDGGELLCCDTCPSSYHIHCLNPPL-PEIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCTTTCCCSSCBCCSSSCCCBCSSSSSSCC-SSCCSSCCCCTTTTT
T ss_pred CcCCCCCCCCCEEEcCCCCHHHcccccCCCc-CcCCCCccCChhhcC
Confidence 3699999887766 89999999999998531 113345678999964
No 31
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.59 E-value=5.3 Score=35.73 Aligned_cols=27 Identities=26% Similarity=0.676 Sum_probs=24.1
Q ss_pred cccccCCCCCcee-eecCCccccccccc
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCIC 31 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~ 31 (463)
.+|..|+...... |-+||.++|..|+.
T Consensus 64 d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 64 EQCRWCAEGGNLICCDFCHNAFCKKCIL 91 (142)
T ss_dssp CSCSSSCCCSSEEECSSSCCEEEHHHHH
T ss_pred CeecccCCCCcEEeCCCCCCeeeHhhcC
Confidence 4799999998877 79999999999987
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=49.19 E-value=5 Score=37.21 Aligned_cols=45 Identities=18% Similarity=0.407 Sum_probs=34.0
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
..|..|++++... |-.|+.+++-.|+...-- .+-...-+|..|..
T Consensus 8 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 8 DWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRD 53 (207)
T ss_dssp SSBTTTCCCEEEEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCceEEcCCCCCccCCccCCCCCC-CCCCCCEEeCceeC
Confidence 5699999998876 899999999999964311 13234579999963
No 33
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.19 E-value=15 Score=29.39 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=33.7
Q ss_pred cccccCCCCC-----ceeeecCCcccccccccCCeEEEEeC---------CcccchhhhHHHH
Q 037148 5 HACYECGKAP-----KFYCLCSPKAICGHCICDAEFAIVKG---------NKGLCSGCLELVL 53 (463)
Q Consensus 5 H~C~~C~k~~-----~~~C~~C~~s~C~~C~~~~~f~~vrg---------nkGfC~~C~~~~~ 53 (463)
..|..|++.= ..+|..|...+|..|.....-+...| .-=.|..|...+.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~ 77 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLS 77 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHH
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHh
Confidence 4699999863 47899999999999976531111111 1237999998754
No 34
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.91 E-value=7.7 Score=31.64 Aligned_cols=51 Identities=22% Similarity=0.564 Sum_probs=35.4
Q ss_pred cccccCCCCC-----ceeeecCCcccccccccCCeEEEEeCC--cccchhhhHHHHHH
Q 037148 5 HACYECGKAP-----KFYCLCSPKAICGHCICDAEFAIVKGN--KGLCSGCLELVLLI 55 (463)
Q Consensus 5 H~C~~C~k~~-----~~~C~~C~~s~C~~C~~~~~f~~vrgn--kGfC~~C~~~~~lI 55 (463)
..|..|++.= ..+|..|...+|..|.....-+.-.|+ --.|..|...+..-
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 3599999853 478999999999999875322111122 24699999876543
No 35
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=45.41 E-value=6.2 Score=32.93 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=33.5
Q ss_pred ccccccCCCCCce----eeecCCcccccccccCCeEEEEeCCcccchhhh
Q 037148 4 LHACYECGKAPKF----YCLCSPKAICGHCICDAEFAIVKGNKGLCSGCL 49 (463)
Q Consensus 4 wH~C~~C~k~~~~----~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~ 49 (463)
-++|..|+..... .|-.|+.+++..|+.-.. ..++...=+|..|.
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-TPLKRAGWQCPECK 55 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-CTTTSTTCCCTTTC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-ccccccCccCCcCC
Confidence 4789999999885 799999999999998753 22344455665553
No 36
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=45.02 E-value=4.4 Score=43.67 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=8.5
Q ss_pred cccccCCCC------CceeeecCCcccccccccCCeEEEEeC---------------------CcccchhhhHHH
Q 037148 5 HACYECGKA------PKFYCLCSPKAICGHCICDAEFAIVKG---------------------NKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k~------~~~~C~~C~~s~C~~C~~~~~f~~vrg---------------------nkGfC~~C~~~~ 52 (463)
.+|..|+.- .-|.|-+|.+.+++.|.......|... .-.||.+|-.++
T Consensus 49 ~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l 123 (674)
T 3pfq_A 49 TFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLL 123 (674)
T ss_dssp -----------------------------------------------------CCCCCEECCSSCCCCSSSCSCC
T ss_pred CccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCcccccc
Confidence 469999875 679999999999999998876666321 126999997764
No 37
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.20 E-value=13 Score=32.34 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=31.8
Q ss_pred cccccCCCCC-----ceeeecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 5 HACYECGKAP-----KFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k~~-----~~~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
..|..|+..= +.+|..|+..+|..|.....= . --.|..|..+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~----vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-G----PRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-C----ceECHHHHHHH
Confidence 4699999854 478999999999999876421 1 34699998764
No 38
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.67 E-value=14 Score=28.09 Aligned_cols=45 Identities=22% Similarity=0.511 Sum_probs=31.7
Q ss_pred ccccccCCCCCc-----------ee--eecCCcccccccccCCeEEEEeCCcccch-hhhHH
Q 037148 4 LHACYECGKAPK-----------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCS-GCLEL 51 (463)
Q Consensus 4 wH~C~~C~k~~~-----------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~-~C~~~ 51 (463)
...|..|+++-. |+ |++|. .|..=+....|+ ++.++-+|. .|..-
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCE--RCSKTLTPGGHA-EHDGKPFCHKPCYAT 67 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTCBCS--SSCCBCCTTSCE-EETTEEECTTTHHHH
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCCCCC--CCCCccCCCceE-eECCEEecchHHHHH
Confidence 467888888654 44 66663 566666666676 568889999 79854
No 39
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.10 E-value=18 Score=27.82 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=32.1
Q ss_pred cccccCCCC----------Ccee--eecCCcccccccccCC-eEEEEeCCcccchhhhHHHH
Q 037148 5 HACYECGKA----------PKFY--CLCSPKAICGHCICDA-EFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 5 H~C~~C~k~----------~~~~--C~~C~~s~C~~C~~~~-~f~~vrgnkGfC~~C~~~~~ 53 (463)
..|..|+++ ..|+ |++|. .|+.=+.+. .|+.++.++-+|..|..-.+
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPECFACM--SCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTSCBCT--TTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CcCccCCCCcCceEEEECCceeccccCCcc--CCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 467778773 2243 77775 477777654 45446999999999986554
No 40
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.01 E-value=17 Score=28.63 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=33.1
Q ss_pred CccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHHH
Q 037148 3 DLHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 3 gwH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~ 53 (463)
+...|..|++.- .|+ |++|. .|+.=+.+..|+ ++.++-+|..|..-.+
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~f~-~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEFNCA--HCKNTMAYIGFV-EEKGALYCELCYEKFF 83 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTCBCS--SSCCBCSSSCBE-ESSSCEECHHHHHHHT
T ss_pred CCCCCccCCCEecceEEEECCccccccCCccC--CCCCCCCCCEeE-eECCEEECHHHHHHHc
Confidence 346788888842 233 77774 566666666675 6888999999986543
No 41
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.43 E-value=10 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=20.8
Q ss_pred ccccccCCCCCceeeecCCccccc
Q 037148 4 LHACYECGKAPKFYCLCSPKAICG 27 (463)
Q Consensus 4 wH~C~~C~k~~~~~C~~C~~s~C~ 27 (463)
-.+|..|+..++|.|..|..-+|-
T Consensus 12 ~~~C~vC~~~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCTTTCSCCSEECTTTCCEESS
T ss_pred CCccCcCcCCCeeeCCCCCCCeeC
Confidence 357999999999999999988775
No 42
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.80 E-value=8.9 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.607 Sum_probs=21.9
Q ss_pred ccccCCCCCceeeecC-CcccccccccC
Q 037148 6 ACYECGKAPKFYCLCS-PKAICGHCICD 32 (463)
Q Consensus 6 ~C~~C~k~~~~~C~~C-~~s~C~~C~~~ 32 (463)
-|..|...+.++|.-| .--+|..|++.
T Consensus 10 WC~ICneDAtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 10 WCCICNEDATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp SCTTTCSCCCEEETTTTSEEECSSHHHH
T ss_pred eeEEeCCCCeEEecCCCCceehHHHHHH
Confidence 4889999999999999 46777777764
No 43
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.57 E-value=20 Score=26.68 Aligned_cols=47 Identities=21% Similarity=0.600 Sum_probs=33.2
Q ss_pred CccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 3 DLHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 3 gwH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
|...|..|++.- .|+ |++|. .|+.=+.+..|+ ++.++-+|..|..-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~f~-~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCD--LCQEVLADIGFV-KNAGRHLCRPCHNRE 62 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCS--SSCCBCSSSCCE-EETTEEECHHHHHHH
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeC--CCCCcCCCCccE-eECCeEECHHHhhhh
Confidence 567888888753 233 67774 576667777666 578899999998644
No 44
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.69 E-value=7.7 Score=30.09 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=32.5
Q ss_pred ccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhh
Q 037148 6 ACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCL 49 (463)
Q Consensus 6 ~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~ 49 (463)
.|..|++..... |-+|+.+++-.|+...- ..|-...=||..|.
T Consensus 14 ~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l-~~~P~g~W~C~~C~ 57 (66)
T 2lri_C 14 RCGVCGDGTDVLRCTHCAAAFHWRCHFPAG-TSRPGTGLRCRSCS 57 (66)
T ss_dssp CCTTTSCCTTCEECSSSCCEECHHHHCTTT-CCCCSSSCCCTTTT
T ss_pred CcCCCCCCCeEEECCCCCCceecccCCCcc-CcCCCCCEECcccc
Confidence 589999888766 89999999999996431 12333457999995
No 45
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.34 E-value=17 Score=28.56 Aligned_cols=43 Identities=21% Similarity=0.475 Sum_probs=34.0
Q ss_pred cccccCCCCC------ceeeecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAP------KFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~------~~~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
-.|..|++.. -..|-.|+.++.-.|+.-.. |-...=||..|..
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 3699999874 33499999999999999763 5456789999964
No 46
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=38.99 E-value=9.2 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=23.5
Q ss_pred cccccCCC----CCceeeecCCcccccccccC
Q 037148 5 HACYECGK----APKFYCLCSPKAICGHCICD 32 (463)
Q Consensus 5 H~C~~C~k----~~~~~C~~C~~s~C~~C~~~ 32 (463)
-.|..|.. .+...|..|..++|..|+..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 36999974 57788999999999999875
No 47
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=38.74 E-value=5.7 Score=32.86 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=35.5
Q ss_pred cccccCCCCCcee-eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
-.|..|++..... |-.|+.++.-.|+...- ..|-...-||..|...
T Consensus 26 ~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL-~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKPGDLVMCNQCEFCFHLDCHLPAL-QDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSSSCCEECTTSSCEECTTSSSTTC-CCCCSSSCCCCSCCCC
T ss_pred CcCcCcCCCCCEEECCCCCCceecccCCCCC-CCCcCCCcCCccccCC
Confidence 3799999888776 89999999999996642 1233456799999754
No 48
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.58 E-value=68 Score=24.18 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=36.4
Q ss_pred ccccccCCCHHHHHHHHhcCCCCCcccCHHHHHHHHHHHhhhcCCC
Q 037148 155 RKEFVGWGSRPLLEFLASIGKDTTRELSDDAITTIISGYCKENKLF 200 (463)
Q Consensus 155 ~~~~~gw~S~eLa~fL~~~G~~t~~~~sR~~Vv~~lW~YIK~nnLQ 200 (463)
..-|..|..+||+.=|+-+|.. -.-+|.+.+..|-.|..+-+.-
T Consensus 5 ~~~ygaW~~~ELQaKLaE~GAP--i~g~REElvdRLk~Y~~QtGi~ 48 (58)
T 2do5_A 5 SSGYGAWAAQELQAKLAEIGAP--IQGNREELVERLQSYTRQTGIV 48 (58)
T ss_dssp CCCSCSSCHHHHHHHHHHHTCC--CCSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCcccccCHHHHHHHHHhCCc--ccccHHHHHHHHHHHhhcccee
Confidence 3467889999999999999963 1457999999999999887753
No 49
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.20 E-value=13 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.647 Sum_probs=32.4
Q ss_pred cccccCCCC-----CceeeecCCcccccccccCCeEEEEe---CCcccchhhhHH
Q 037148 5 HACYECGKA-----PKFYCLCSPKAICGHCICDAEFAIVK---GNKGLCSGCLEL 51 (463)
Q Consensus 5 H~C~~C~k~-----~~~~C~~C~~s~C~~C~~~~~f~~vr---gnkGfC~~C~~~ 51 (463)
..|..|++. -.++|..|+..+|..|.... +.+- ..--.|..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~--~~~p~~~~p~RVC~~C~~~ 122 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN--ALTPSSKKPVRVCDACFND 122 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE--ECCTTCSSCEEECHHHHHH
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc--cccCCCCCCCEeCHHHHHH
Confidence 369999985 34789999999999998653 2221 223478888765
No 50
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.46 E-value=12 Score=29.30 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=33.7
Q ss_pred CccccccCCCCC-----------cee--eecCCcccccccccCCeEEE-EeCCcccchhhhH
Q 037148 3 DLHACYECGKAP-----------KFY--CLCSPKAICGHCICDAEFAI-VKGNKGLCSGCLE 50 (463)
Q Consensus 3 gwH~C~~C~k~~-----------~~~--C~~C~~s~C~~C~~~~~f~~-vrgnkGfC~~C~~ 50 (463)
+-..|..|++.. .|+ |+.|. .|+.=+....|+. .+.++-+|..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCH--TCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCS--SSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEc--CCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 345788888765 233 78884 6777788888886 4888999998874
No 51
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=37.25 E-value=11 Score=33.26 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=23.6
Q ss_pred cccccCCCCCcee-eecCCcccccccccC
Q 037148 5 HACYECGKAPKFY-CLCSPKAICGHCICD 32 (463)
Q Consensus 5 H~C~~C~k~~~~~-C~~C~~s~C~~C~~~ 32 (463)
.+|..|....... |-+||.++|..|+..
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~ 86 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNAFCKKCILR 86 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCEEEHHHHHH
T ss_pred CcCeecCCCCeeEecCCCchhhhHHHhCC
Confidence 3599999888876 799999999999873
No 52
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.88 E-value=10 Score=30.96 Aligned_cols=52 Identities=19% Similarity=0.416 Sum_probs=36.3
Q ss_pred ccccCCCC-----CceeeecCCcccccccccCCeEEEEe-CCcccchhhhHHHHHHhc
Q 037148 6 ACYECGKA-----PKFYCLCSPKAICGHCICDAEFAIVK-GNKGLCSGCLELVLLIEE 57 (463)
Q Consensus 6 ~C~~C~k~-----~~~~C~~C~~s~C~~C~~~~~f~~vr-gnkGfC~~C~~~~~lIE~ 57 (463)
.|..|++. -.++|..|+..+|..|......+.-- ..--.|..|...+.-+..
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKAQA 79 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHHC-
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHHhh
Confidence 59999875 35789999999999998865432111 113579999987754433
No 53
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.60 E-value=30 Score=25.63 Aligned_cols=47 Identities=17% Similarity=0.535 Sum_probs=30.9
Q ss_pred CccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 3 DLHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 3 gwH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
+...|..|+++- .|+ |++|. .|..=+....|+ ++.++-+|..|..-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCT--ACRKQLSGQRFT-ARDDFAYCLNCFCDL 62 (70)
T ss_dssp CCCBCSSSCCBCCSSEEESSSSEEETTTSBCS--SSCCBCTTSCCE-ESSSSEECHHHHHHH
T ss_pred CCCCCcccCCeeccceEEECccccCCCCCccC--CCCCcCCcCceE-eeCCeEECHHHHHHH
Confidence 456788888743 233 66664 455555556665 578889999998643
No 54
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.77 E-value=13 Score=29.65 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=34.2
Q ss_pred cccccCCCC-----CceeeecCCcccccccccCCeEEEEe---CCcccchhhhHHHH
Q 037148 5 HACYECGKA-----PKFYCLCSPKAICGHCICDAEFAIVK---GNKGLCSGCLELVL 53 (463)
Q Consensus 5 H~C~~C~k~-----~~~~C~~C~~s~C~~C~~~~~f~~vr---gnkGfC~~C~~~~~ 53 (463)
..|..|++. -.++|..|+..+|..|.... +.+- ..--.|..|...+.
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~--~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE--LALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE--ECCTTCSSCEEECHHHHHHTT
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCe--eecCCCCCcCEECHHHHHHHH
Confidence 469999984 45789999999999998753 2221 22357999987653
No 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.27 E-value=25 Score=26.76 Aligned_cols=43 Identities=19% Similarity=0.542 Sum_probs=29.4
Q ss_pred cccccCCCCCc--------------ee--eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPK--------------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~--------------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
..|..|+++-. |+ |+.|. .|+.=+....|+ ++.++-+|..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~f~-~~~g~~yC~~cy~ 64 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCG--KCSVSLVGKGFL-TQNKEIFCQKCGS 64 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCT--TTCCBCSSSCEE-EETTEEEETTTTC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChh--hCCCcCCCCceE-eECCEEECHHHhh
Confidence 46778877543 33 67773 566666666666 4788899998874
No 56
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.40 E-value=13 Score=35.08 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=23.8
Q ss_pred cccccCCCCC-----ceeeecCCcccccccccCC
Q 037148 5 HACYECGKAP-----KFYCLCSPKAICGHCICDA 33 (463)
Q Consensus 5 H~C~~C~k~~-----~~~C~~C~~s~C~~C~~~~ 33 (463)
..|..|++.= .++|..|+..+|..|....
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4799998643 5889999999999998754
No 57
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=33.02 E-value=25 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.556 Sum_probs=27.7
Q ss_pred cccccCCCCCc---------------ee--eecCCcccccccccCCeEEEEeCCcccchhhhH
Q 037148 5 HACYECGKAPK---------------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLE 50 (463)
Q Consensus 5 H~C~~C~k~~~---------------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~ 50 (463)
..|..|+++-. |+ |+.|. .|+.=+....|+ ++.++-+|..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~f~-~~~~~~yC~~cy~ 75 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCK--KCSVNLANKRFV-FHQEQVYCPDCAK 75 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCS--SSCCBCTTSCCC-EETTEECCHHHHH
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccCEeh--hcCCCCCCCccE-eECCEEEChHHhc
Confidence 46778877544 22 56653 455555555665 6778889998874
No 58
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.87 E-value=26 Score=26.93 Aligned_cols=47 Identities=19% Similarity=0.510 Sum_probs=31.3
Q ss_pred CccccccCCCCCc-----------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 3 DLHACYECGKAPK-----------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 3 gwH~C~~C~k~~~-----------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
+...|..|+++-. |+ |++|. .|..=+....|+ ++.++-+|..|..-.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCM--VCRKNLDSTTVA-IHDAEVYCKSCYGKK 65 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECS--SSCCEECSSCCE-EETTEEECSHHHHHH
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccC--CCCCCCCCCCeE-eeCCEEECHHHHHHH
Confidence 4578999998652 33 66664 466656666665 458889999998643
No 59
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.61 E-value=41 Score=24.86 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=31.3
Q ss_pred CccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 3 DLHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 3 gwH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
+...|..|+++- .|+ |++|. .|+.=+....|+ ++.++-+|..|..-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCV--TCSKKLAGQRFT-AVEDQYYCVDCYKNF 62 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCT--TTCCBCTTSCEE-ECSSCEEEHHHHHHH
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEEC--CCCCCCCCCccE-eECCEEECHHHhHHH
Confidence 456788888853 233 66664 466556555665 577889999998643
No 60
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.39 E-value=25 Score=27.79 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=30.3
Q ss_pred CccccccCCCCCc-----------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 3 DLHACYECGKAPK-----------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 3 gwH~C~~C~k~~~-----------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
+...|..|++.-. |+ |++|. .|..=+....|+ ++.++-+|..|..-.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCS--YCNNKLSLGTYA-SLHGRIYCKPHFNQL 73 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCT--TTCCBCCTTTCC-CSSSCCCCHHHHHHH
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeC--CCCCCCCCCCcE-eECCEEECHHHHHHH
Confidence 4567888887652 33 66663 466556665654 456778888888543
No 61
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=32.19 E-value=30 Score=26.49 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=48.1
Q ss_pred ccCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHhhhhCCCcccccchHHHHhcccCCccc
Q 037148 180 ELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLE 241 (463)
Q Consensus 180 ~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD~kL~~LFg~~rv~~~ei~klL~~Hl~~~~~ 241 (463)
.|+|.++...|.+.|.+.-=.+| ..|..|..|..-+|-+++.+.++...|+.+|--.-|
T Consensus 4 ~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~ 62 (84)
T 2kwl_A 4 SMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIP 62 (84)
T ss_dssp CSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcC
Confidence 39999999999999988632233 468899999788999999999999999999865433
No 62
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.06 E-value=42 Score=24.94 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=31.2
Q ss_pred CccccccCCCCCc------------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHHHH
Q 037148 3 DLHACYECGKAPK------------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 3 gwH~C~~C~k~~~------------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~ 53 (463)
+...|..|+++-. |+ |++|. .|+.=+....|+ ++.++-+|..|..-.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCS--TCRAQLRGQHFY-AVERRAYCEGCYVATL 65 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCS--SSCCBCTTSCEE-ESSSCEEEHHHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCccc--ccCCcCCcCcCE-eeCCeEECHHHHHHHH
Confidence 4578888887432 22 56663 455555556664 5677899999986543
No 63
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.98 E-value=16 Score=32.20 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=36.8
Q ss_pred CccccccCCCCCce------eeecCCcccccccccCCeEEEEeCCcccchhhhHHHHH
Q 037148 3 DLHACYECGKAPKF------YCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLL 54 (463)
Q Consensus 3 gwH~C~~C~k~~~~------~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~l 54 (463)
+-+.|..|+++=.| .|..|.+.||..|-...-. .=+...-+|.-|.+..-+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-~~~~~~W~C~vC~k~rel 110 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-NRPHPVWLCKICLEQREV 110 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-SSSSCCEEEHHHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCC-CCCccceechhhHHHHHH
Confidence 45789999987543 7999999999999764311 012346789999887554
No 64
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.83 E-value=36 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=31.0
Q ss_pred ccccccCCCCCc------------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 4 LHACYECGKAPK------------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 4 wH~C~~C~k~~~------------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
...|..|+++-. |+ |++|. .|+.=+....|+ ++.++-+|..|..-.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCS--GCEQPLGSRSFV-PDKGAHYCVPCYENK 64 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCT--TTCCBTTTSCEE-EETTEEEEHHHHHHH
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeEC--CCCCcCCCCccC-CcCCeEECHHHHHHH
Confidence 356777776432 33 67774 577667777776 567789999998643
No 65
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.09 E-value=31 Score=27.11 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=31.4
Q ss_pred CccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 3 DLHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 3 gwH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
+-..|..|++.- .|+ |++|. .|+.=+....|+. +.++-+|..|..-
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~-~~g~~yC~~~y~~ 81 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCA--DCNLNLKQKGYFF-VEGELYCETHARA 81 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTCCCS--SSCCCTTTSCCEE-ETTEEECHHHHHH
T ss_pred cCCCcccCCCEecccEEEECCceECccCCEec--CCCCCCCCCCeEe-ECCEEECHHHHHH
Confidence 346788888753 344 67764 4666666667775 4778999999854
No 66
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.73 E-value=17 Score=29.49 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=39.5
Q ss_pred cccccCCCCC------ceeeecCCcccccccccCCeE---EEEeCCcccchhhhHHHHHHhcc
Q 037148 5 HACYECGKAP------KFYCLCSPKAICGHCICDAEF---AIVKGNKGLCSGCLELVLLIEEN 58 (463)
Q Consensus 5 H~C~~C~k~~------~~~C~~C~~s~C~~C~~~~~f---~~vrgnkGfC~~C~~~~~lIE~~ 58 (463)
-.|..|++.. -..|-.|+.+++-.|+...-- +.|-...-||..|....-.++..
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 3699999872 344999999999999986422 23556678999998876544433
No 67
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.62 E-value=12 Score=28.84 Aligned_cols=46 Identities=17% Similarity=0.530 Sum_probs=32.0
Q ss_pred ccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHHH
Q 037148 6 ACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 6 ~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~ 53 (463)
.|..|++.- .|+ |++|. .|+.=+....|+.++++.-+|..|..-++
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCA--VCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTSSCS--SSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred cCccccCEeccceEEECCceeCccCCccc--cCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 677777753 233 77774 57666777788888887779999985443
No 68
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=30.57 E-value=12 Score=27.57 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.9
Q ss_pred CeEEEEeCCcccchhhh
Q 037148 33 AEFAIVKGNKGLCSGCL 49 (463)
Q Consensus 33 ~~f~~vrgnkGfC~~C~ 49 (463)
..|+.--.|+|||.-|.
T Consensus 23 C~fFGTpen~GFCTlCf 39 (48)
T 2eqe_A 23 CVYFGTPENKGFCTLCF 39 (48)
T ss_dssp CCSBCCTTTTTCCHHHH
T ss_pred CCcccCcccCceeeeeh
Confidence 46888889999999996
No 69
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.74 E-value=21 Score=27.42 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=29.1
Q ss_pred CccccccCCCCCc----------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHHHH
Q 037148 3 DLHACYECGKAPK----------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 3 gwH~C~~C~k~~~----------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~ 53 (463)
+-..|..|++.-. |+ |++|. .|+.=+....|+ ++.++-+|..|..-.+
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECYVCT--DCGTNLKQKGHF-FVEDQIYCEKHARERV 73 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTTSCS--SSCCCHHHHCCE-ESSSCEECHHHHHHHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcCeeC--CCCCCCCCCCeE-eECCEEECHHHHHHHh
Confidence 3467888887542 33 55552 344434445566 5677889999986543
No 70
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.13 E-value=24 Score=28.85 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=35.1
Q ss_pred cccccCCCCCc----eeeecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 5 HACYECGKAPK----FYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k~~~----~~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
-.|..|++... ..|-.|+.+++-.|+...-- .|-...=||..|..-.
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHHHHH
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCcCcc
Confidence 36999999873 44999999999999984311 2334578999997654
No 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.09 E-value=36 Score=25.39 Aligned_cols=46 Identities=17% Similarity=0.453 Sum_probs=29.8
Q ss_pred CccccccCCCCCc--------------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 3 DLHACYECGKAPK--------------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 3 gwH~C~~C~k~~~--------------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
+...|..|+++-. |+ |++|. .|+.=+....|+ ++.++-+|..|..-
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~f~-~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCK--KCSLSLVGRGFL-TERDDILCPDCGKD 65 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCS--SSCCBCTTSCCE-ECSSSEECHHHHHT
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEec--cCCCcCCCCccE-eECCEEEChhHcCc
Confidence 3456777777433 22 66664 466555555554 57889999999853
No 72
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.74 E-value=33 Score=25.17 Aligned_cols=45 Identities=9% Similarity=0.242 Sum_probs=29.1
Q ss_pred ccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 4 LHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 4 wH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
...|..|+++- .|+ |++|. .|+.=+....|+ ++.++-+|..|..-
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHFVCA--KCEKPFLGHRHY-ERKGLAYCETHYNQ 61 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTCBCT--TTCCBCSSSCCE-EETTEEECHHHHHH
T ss_pred CCCCcccCCEecceEEEECccccccCcCEEC--CCCCCCCCCceE-eECCcEECHHHHHH
Confidence 45677777632 344 66664 455555666675 67888999999853
No 73
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.15 E-value=13 Score=28.30 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=34.4
Q ss_pred cccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHHHHH
Q 037148 5 HACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLI 55 (463)
Q Consensus 5 H~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~lI 55 (463)
..|..|+++- .|+ |++|. .|+.=+.+..++.+++++-+|..|..-+..-
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~--~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCALCV--RCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTSCCS--SSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcCEeC--CCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 4677777643 233 67774 5777777566777889999999999766553
No 74
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.12 E-value=1.9e+02 Score=22.34 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=33.5
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 037148 383 NLSNDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDR 443 (463)
Q Consensus 383 ~iSn~~FTE~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~i~~~w~e~E~~~L~~l~d~ 443 (463)
.+||.+.|-+||-.++..... -+.|+. +-..++.=+.+|+.+||+.+..
T Consensus 4 dlsDgpit~qeylevK~ALaa----------SeAkiQ--QLmkVN~~ls~Elr~mQ~~lq~ 52 (63)
T 2w6a_A 4 GSSDGAVTLQEYLELKKALAT----------SEAKVQ--QLMKVNSSLSDELRKLQREIHK 52 (63)
T ss_dssp C--CCSSCHHHHHHHHHHHHH----------HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHh----------hHHHHH--HHHHHhHhhhHHHHHHHHHHHH
Confidence 589999999999998877654 133333 3344666778889999887653
No 75
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.01 E-value=14 Score=27.58 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=16.2
Q ss_pred CccccccCCCCCc-------eeeecCCcc
Q 037148 3 DLHACYECGKAPK-------FYCLCSPKA 24 (463)
Q Consensus 3 gwH~C~~C~k~~~-------~~C~~C~~s 24 (463)
|-..|..|+..=. .||||||.-
T Consensus 11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~ 39 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALRGHMCYCCPEM 39 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred CceeCCcccccccchHHHHhhhhhcCcch
Confidence 4568899987654 479999953
No 76
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.76 E-value=46 Score=25.35 Aligned_cols=45 Identities=29% Similarity=0.510 Sum_probs=30.5
Q ss_pred cccccCCCCCc------------ee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 5 HACYECGKAPK------------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k~~~------------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
..|..|++.-. |+ |++|. .|+.=+....|+. +.++-+|..|..-.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~-~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCS--NCKQVIGTGSFFP-KGEDFYCVTCHETK 74 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTCCCS--SSCCCCTTSCEEE-ETTEEEEHHHHHHH
T ss_pred CcCccCCcccccCceEEEECccccccccCchh--hCCCccCCCccEe-eCCEEECHHHHHHH
Confidence 46777777543 23 66664 5666666777764 78889999998644
No 77
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.22 E-value=40 Score=25.49 Aligned_cols=44 Identities=25% Similarity=0.588 Sum_probs=29.0
Q ss_pred ccccCCCCCc-----------ee--eecCCcccccccccCCeEEEEeCCcccch-hhhHHH
Q 037148 6 ACYECGKAPK-----------FY--CLCSPKAICGHCICDAEFAIVKGNKGLCS-GCLELV 52 (463)
Q Consensus 6 ~C~~C~k~~~-----------~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~-~C~~~~ 52 (463)
.|..|+++-. |+ |++|. .|+.=+....|+ ++.++-+|. .|..-.
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~g~~yC~~~cy~~~ 59 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCE--KCGKTLTSGGHA-EHEGKPYCNHPCYSAM 59 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCT--TTCCBCCTTTEE-EETTEEEETTTHHHHH
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCcc--ccCccCCCCceE-CcCCeEeeCHHHHHHH
Confidence 4677777532 33 66663 566666666676 578889999 698643
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.18 E-value=19 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.9
Q ss_pred CccccccCCCC--------CceeeecCCcccccccc
Q 037148 3 DLHACYECGKA--------PKFYCLCSPKAICGHCI 30 (463)
Q Consensus 3 gwH~C~~C~k~--------~~~~C~~C~~s~C~~C~ 30 (463)
+-++|-.|+.. ..--|--|.|.||+-|.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCy 50 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCY 50 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHH
Confidence 45799999987 45559999999999886
No 79
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.38 E-value=8 Score=34.55 Aligned_cols=47 Identities=21% Similarity=0.404 Sum_probs=32.5
Q ss_pred cccccCCCCC---cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHH
Q 037148 5 HACYECGKAP---KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k~~---~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~ 52 (463)
-+| .|+++. .+| |-.|+-.++..|++-..-..-...+=+|..|...-
T Consensus 9 ~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 9 LYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred cEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 368 898863 445 99999999999997432111113467899998753
No 80
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=24.26 E-value=37 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=30.6
Q ss_pred ccccccCC-CCCc-eeeec--CCcccccccccC------------CeEEEEeCCcccchhhhHH
Q 037148 4 LHACYECG-KAPK-FYCLC--SPKAICGHCICD------------AEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 4 wH~C~~C~-k~~~-~~C~~--C~~s~C~~C~~~------------~~f~~vrgnkGfC~~C~~~ 51 (463)
+..|+.|. .... ++|++ |.+-.|+. -.. .-++.+.-..-+|-.|-..
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr-~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~ 87 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE-SQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 87 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT-TTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEE
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC-CcChHHHHHhhhcCCcEEEECCCCCEEECCCCcE
Confidence 34699999 4445 99999 99999976 211 2444444445666666444
No 81
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.09 E-value=48 Score=25.51 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=27.4
Q ss_pred cccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 5 HACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 5 H~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
..|..|+++- .|+ |++|. .|+.=+....| .+.++-+|..|..-
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~f--~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDHFNCA--NCGKELTADAR--ELKGELYCLPCHDK 70 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTTSBCS--SSCCBCCTTCE--EETTEEECHHHHHT
T ss_pred CCCccCCCEecceEEEECcceeCCCCCEeC--CCCCccCCCCE--eECCEEeCHHHHHH
Confidence 4677777632 233 66663 36555565544 78889999999753
No 82
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=23.66 E-value=28 Score=28.35 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=25.0
Q ss_pred cccccCCCC-------CceeeecCCcccccccccCC
Q 037148 5 HACYECGKA-------PKFYCLCSPKAICGHCICDA 33 (463)
Q Consensus 5 H~C~~C~k~-------~~~~C~~C~~s~C~~C~~~~ 33 (463)
..|+.|+++ ..|+|.=|..-|...|+...
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 589999887 67999999999999997654
No 83
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=22.56 E-value=41 Score=25.35 Aligned_cols=59 Identities=8% Similarity=0.068 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHhhhhCCCcccccchHHHHhcccCCccc
Q 037148 180 ELSDDAITTIISGYCKENKLFHPERKRKIICDARLKALFGRKSVNKNSIPKLLTIHLAENLE 241 (463)
Q Consensus 180 ~~sR~~Vv~~lW~YIK~nnLQDP~~Kr~I~CD~kL~~LFg~~rv~~~ei~klL~~Hl~~~~~ 241 (463)
+|++.++...|.++|.+.-=.+| ..|..|..|..-+|-+++...++...|+.+|--.-|
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~ 60 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFDMEIS 60 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccC
Confidence 48889999999999887642233 468899999888999999999999999999864433
No 84
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=22.14 E-value=41 Score=29.81 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhcccccccccccc
Q 037148 386 NDDFSEEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDITKHWIARELDILRKCVDRANEKGWRRQYPSFSGH 459 (463)
Q Consensus 386 n~~FTE~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~i~~~w~e~E~~~L~~l~d~A~EkG~~~e~p~~~~k 459 (463)
+.+||+.++-.+-..+...++..-+.+-.+-=-.+|... -.+++.+.++...+..+-+++|||...-|++.++
T Consensus 95 ~ap~~D~~i~~~~l~~~k~~l~~~s~a~~es~r~Dir~~-f~~~~~~~~~~~~~i~~~m~~KGw~~~pP~~~~~ 167 (171)
T 2rbd_A 95 GARFNDPEISATISMDVAKGLVTCSQIIGQSIREDVALM-FSQFHMAKVQFGGKMLKLNKNKGWLIPPPLHSDR 167 (171)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCCCCCCBCCC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccCC
Confidence 445999999988887777666555555444333343333 3346667788888889999999999999977654
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.14 E-value=27 Score=29.65 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=34.2
Q ss_pred cccccCCC-----CCceeeecCC-----cccccccccCCeEEEEeC-CcccchhhhHHH
Q 037148 5 HACYECGK-----APKFYCLCSP-----KAICGHCICDAEFAIVKG-NKGLCSGCLELV 52 (463)
Q Consensus 5 H~C~~C~k-----~~~~~C~~C~-----~s~C~~C~~~~~f~~vrg-nkGfC~~C~~~~ 52 (463)
-+|..|+. ...|.|-.|. -++|+.|-..-+.+.-=| .--||.+|-.||
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCcee
Confidence 37888883 4567799987 578999988866655555 345788886654
No 86
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.80 E-value=45 Score=29.97 Aligned_cols=45 Identities=27% Similarity=0.663 Sum_probs=33.2
Q ss_pred ccccCCCCC-----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHHHH
Q 037148 6 ACYECGKAP-----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVL 53 (463)
Q Consensus 6 ~C~~C~k~~-----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~ 53 (463)
.|..|+++- .|+ |+.|. .|..=+....|+ .+.++-+|..|..-.+
T Consensus 117 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~-~~~g~~yC~~cy~~~f 174 (192)
T 1b8t_A 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCA--KCGKSLESTTLA-DKDGEIYCKGCYAKNF 174 (192)
T ss_dssp ECTTTSCEECSSSCEEETTEEECTTTCBCT--TTCCBCCSSSEE-EETTEEEEHHHHHHHT
T ss_pred cCCCCCCEecCcEEEecCCCccchhcCCcc--ccCCCCCCCccc-ccCCEEeCHHHHHHhc
Confidence 588998854 233 77774 577777777776 7888999999987543
No 87
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=20.67 E-value=42 Score=29.30 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=19.9
Q ss_pred CccccccCCCCCc-eeeecCCcccccc
Q 037148 3 DLHACYECGKAPK-FYCLCSPKAICGH 28 (463)
Q Consensus 3 gwH~C~~C~k~~~-~~C~~C~~s~C~~ 28 (463)
+| .|+.|..... ++|++|.+-.|+.
T Consensus 34 ~~-~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 34 GW-KCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp BC-CCSSSSCCSSEEEETTTCCEEECC
T ss_pred CC-cCccccCcCceEEeccCCccccCc
Confidence 45 4999998765 6699999998873
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.53 E-value=38 Score=26.11 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=32.5
Q ss_pred ccccCCCC--Ccee--eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 6 ACYECGKA--PKFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 6 ~C~~C~k~--~~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
+|..|++. ...| |-.|+..+...|+.-..-. +...+=||..|..-
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~-~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP-PEEMQWFCPKCANK 68 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC-CSSSCCCCTTTHHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC-CCCCCEEChhccCc
Confidence 68899887 3345 9999999999999854321 12246799999753
No 89
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.30 E-value=52 Score=27.62 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=34.1
Q ss_pred ccccCCCC----CceeeecCCcccccccccCCeEEEEeCCcccchhhhHHHHH
Q 037148 6 ACYECGKA----PKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLL 54 (463)
Q Consensus 6 ~C~~C~k~----~~~~C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~~~l 54 (463)
.|..|++. .-..|-.|+.++.-.|+...- ..|-...=||..|....--
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl-~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPV-AEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCC-SSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCc-cCCCCCCeECccccchhhc
Confidence 78888874 344599999999999998531 1233346899999876543
No 90
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=20.18 E-value=1.4e+02 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh
Q 037148 391 EEECEDLRQRVKNGLASRPTVVELRQKAVCLHEDIT 426 (463)
Q Consensus 391 E~E~~rlrq~~~~~~~k~pTv~~l~~Ka~~i~~~i~ 426 (463)
|+.+-.|...+...+++ ||-..|.+||..|...+.
T Consensus 78 E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g 112 (131)
T 1hlv_A 78 EGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELG 112 (131)
T ss_dssp HHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhC
Confidence 88899999999999998 999999999999987764
No 91
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.17 E-value=32 Score=25.38 Aligned_cols=30 Identities=20% Similarity=0.647 Sum_probs=20.4
Q ss_pred eecCCcccccccccCCeEEEEeCCcccc-hhhhH
Q 037148 18 CLCSPKAICGHCICDAEFAIVKGNKGLC-SGCLE 50 (463)
Q Consensus 18 C~~C~~s~C~~C~~~~~f~~vrgnkGfC-~~C~~ 50 (463)
|++|. .|+.=+....|+ +++++-+| ..|.+
T Consensus 32 CF~C~--~C~~~L~~~~f~-~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 32 CFLCS--CCSKCLIGQKFM-PVEGMVFCSVECKK 62 (65)
T ss_dssp TSBCT--TTCCBCTTSCCE-EETTEEESSHHHHH
T ss_pred CEECC--CCCCcCCCCceE-EECCEEecCHHHhh
Confidence 55552 466556666665 57788999 89975
No 92
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.16 E-value=57 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.410 Sum_probs=27.6
Q ss_pred ccccccCCCCC----------cee--eecCCcccccccccCCeEEEEeCCcccchhhhHH
Q 037148 4 LHACYECGKAP----------KFY--CLCSPKAICGHCICDAEFAIVKGNKGLCSGCLEL 51 (463)
Q Consensus 4 wH~C~~C~k~~----------~~~--C~~C~~s~C~~C~~~~~f~~vrgnkGfC~~C~~~ 51 (463)
...|..|+++- .|+ |++|. .|+.=+....|+....++-+|..|..-
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~f~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGCFTCV--VCHRGLDGIPFTVDATSQIHCIEDFHR 72 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTCBCS--SSCCBCTTSCEECCTTCCCEEHHHHHH
T ss_pred CCccccCCCeecceeEEECCccccHHhcCcc--cCCCccCCCeeEECCCCEEECHHHHHH
Confidence 34677777642 233 56663 455555555565544678889888754
No 93
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.15 E-value=29 Score=27.35 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=21.3
Q ss_pred cccccCCC----CCceeeecCCccccccccc
Q 037148 5 HACYECGK----APKFYCLCSPKAICGHCIC 31 (463)
Q Consensus 5 H~C~~C~k----~~~~~C~~C~~s~C~~C~~ 31 (463)
-.|..|.. .+.-.|++|--|+|..|+.
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~ 61 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLK 61 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHH
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhH
Confidence 36788853 4566799999999999987
Done!