Query 037149
Match_columns 244
No_of_seqs 249 out of 1679
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 8E-40 1.7E-44 275.8 4.8 162 1-162 1-191 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.2E-33 2.6E-38 204.9 4.0 74 2-75 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 2.1E-30 4.6E-35 190.5 4.3 75 2-76 1-76 (83)
4 smart00432 MADS MADS domain. 100.0 8.4E-30 1.8E-34 174.9 4.4 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 4.6E-29 1E-33 171.3 3.6 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 9.4E-28 2E-32 159.7 1.7 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 1.8E-20 3.9E-25 142.5 11.5 91 81-171 10-100 (100)
8 KOG0015 Regulator of arginine 99.8 1.1E-19 2.3E-24 158.5 3.3 66 2-67 63-128 (338)
9 COG5068 ARG80 Regulator of arg 99.5 2.4E-14 5.2E-19 130.3 4.0 67 1-67 81-147 (412)
10 PF06005 DUF904: Protein of un 94.9 0.37 8.1E-06 34.3 8.7 50 117-171 1-50 (72)
11 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.4 9.8 0.00021 29.9 10.6 44 127-171 87-130 (132)
12 cd07429 Cby_like Chibby, a nuc 88.1 0.86 1.9E-05 35.0 4.1 26 146-171 72-97 (108)
13 PF06698 DUF1192: Protein of u 87.0 1.1 2.4E-05 30.7 3.7 31 108-138 12-42 (59)
14 PRK15422 septal ring assembly 86.9 8.6 0.00019 27.8 8.4 43 117-164 1-43 (79)
15 PF10584 Proteasome_A_N: Prote 86.9 0.16 3.5E-06 28.1 -0.3 15 42-56 2-16 (23)
16 PRK04098 sec-independent trans 86.0 0.3 6.5E-06 40.0 0.7 29 42-72 14-42 (158)
17 PF08317 Spc7: Spc7 kinetochor 85.4 15 0.00032 33.5 11.5 62 112-173 201-264 (325)
18 PF14662 CCDC155: Coiled-coil 85.3 22 0.00047 30.1 11.6 78 86-174 18-95 (193)
19 smart00787 Spc7 Spc7 kinetocho 83.9 5 0.00011 36.5 7.7 78 95-172 177-258 (312)
20 PRK13169 DNA replication intia 82.6 10 0.00022 29.2 7.8 48 119-171 7-54 (110)
21 PF01166 TSC22: TSC-22/dip/bun 82.6 3 6.5E-05 28.4 4.2 26 143-168 18-43 (59)
22 PRK10884 SH3 domain-containing 81.6 25 0.00054 30.1 10.6 22 87-108 90-111 (206)
23 PF06156 DUF972: Protein of un 81.2 12 0.00026 28.6 7.7 48 119-171 7-54 (107)
24 COG3074 Uncharacterized protei 80.3 18 0.00039 25.6 7.8 48 117-169 1-48 (79)
25 KOG0804 Cytoplasmic Zn-finger 78.5 24 0.00053 33.6 10.2 48 120-168 364-411 (493)
26 PRK11637 AmiB activator; Provi 78.1 42 0.0009 31.6 12.0 44 87-139 51-94 (428)
27 PF06156 DUF972: Protein of un 75.7 19 0.00042 27.5 7.4 29 143-171 19-47 (107)
28 COG4467 Regulator of replicati 73.6 16 0.00034 28.1 6.3 48 119-171 7-54 (114)
29 PF07106 TBPIP: Tat binding pr 71.1 25 0.00055 28.6 7.7 51 87-141 83-133 (169)
30 PRK13824 replication initiatio 70.0 14 0.0003 34.9 6.5 92 41-139 108-212 (404)
31 PRK10884 SH3 domain-containing 69.6 29 0.00063 29.7 7.9 20 86-105 96-115 (206)
32 KOG4797 Transcriptional regula 69.2 26 0.00055 27.0 6.5 24 144-167 72-95 (123)
33 PF10211 Ax_dynein_light: Axon 68.4 32 0.00069 28.9 7.8 24 50-73 81-104 (189)
34 PRK13169 DNA replication intia 67.1 34 0.00074 26.3 7.0 28 143-170 19-46 (110)
35 TIGR02338 gimC_beta prefoldin, 66.5 54 0.0012 24.8 8.8 46 125-171 61-106 (110)
36 PF14645 Chibby: Chibby family 65.9 10 0.00022 29.5 4.0 26 145-170 70-95 (116)
37 cd00187 TOP4c DNA Topoisomeras 65.1 65 0.0014 30.8 10.0 60 7-72 257-327 (445)
38 PF15619 Lebercilin: Ciliary p 64.1 89 0.0019 26.4 9.9 28 147-174 165-192 (194)
39 smart00338 BRLZ basic region l 63.7 35 0.00075 23.2 6.0 37 133-173 17-53 (65)
40 PF09744 Jnk-SapK_ap_N: JNK_SA 61.7 42 0.00091 27.5 7.1 28 144-171 87-114 (158)
41 PF00170 bZIP_1: bZIP transcri 60.7 42 0.00092 22.7 6.0 36 133-172 17-52 (64)
42 PF07716 bZIP_2: Basic region 59.5 47 0.001 21.7 6.2 35 133-171 16-50 (54)
43 PF04849 HAP1_N: HAP1 N-termin 59.0 63 0.0014 29.4 8.3 51 122-172 215-267 (306)
44 KOG4797 Transcriptional regula 58.6 17 0.00038 27.8 3.9 43 127-169 48-90 (123)
45 PF01093 Clusterin: Clusterin; 58.3 36 0.00077 32.5 6.9 74 113-186 2-85 (436)
46 PF01166 TSC22: TSC-22/dip/bun 58.2 10 0.00022 25.8 2.4 25 145-169 13-37 (59)
47 smart00340 HALZ homeobox assoc 56.7 24 0.00052 22.4 3.7 25 149-173 8-32 (44)
48 COG2433 Uncharacterized conser 56.4 1E+02 0.0022 30.8 9.6 83 87-171 419-506 (652)
49 KOG0971 Microtubule-associated 56.1 1.7E+02 0.0038 30.7 11.5 53 86-138 328-389 (1243)
50 COG2433 Uncharacterized conser 54.7 1.7E+02 0.0037 29.2 10.9 17 88-104 441-457 (652)
51 PF09789 DUF2353: Uncharacteri 54.2 1.2E+02 0.0025 27.9 9.2 43 129-172 70-112 (319)
52 smart00030 CLb CLUSTERIN Beta 53.8 62 0.0013 27.6 6.9 74 113-186 8-91 (206)
53 KOG1962 B-cell receptor-associ 53.3 81 0.0017 27.2 7.6 53 119-171 157-211 (216)
54 PF07888 CALCOCO1: Calcium bin 52.6 1.6E+02 0.0034 29.1 10.3 25 145-169 212-236 (546)
55 PF10504 DUF2452: Protein of u 52.5 71 0.0015 26.2 6.8 43 118-160 28-73 (159)
56 PF06005 DUF904: Protein of un 52.2 52 0.0011 23.3 5.4 33 139-171 11-43 (72)
57 TIGR02894 DNA_bind_RsfA transc 51.4 88 0.0019 25.8 7.2 44 84-136 105-148 (161)
58 PF15254 CCDC14: Coiled-coil d 51.0 2.2E+02 0.0049 29.3 11.2 88 86-174 390-483 (861)
59 PF15397 DUF4618: Domain of un 50.3 1.4E+02 0.003 26.5 8.9 34 138-171 185-218 (258)
60 PRK09343 prefoldin subunit bet 49.5 1.2E+02 0.0026 23.4 8.4 42 129-171 69-110 (121)
61 PF04977 DivIC: Septum formati 49.5 39 0.00085 23.4 4.5 29 144-172 22-50 (80)
62 PF04111 APG6: Autophagy prote 49.3 2.1E+02 0.0044 26.0 10.6 68 90-171 43-110 (314)
63 PHA02592 52 DNA topisomerase I 49.3 1.4E+02 0.0031 28.5 9.5 43 25-72 284-326 (439)
64 TIGR02894 DNA_bind_RsfA transc 47.9 1.6E+02 0.0034 24.3 10.8 59 114-172 77-137 (161)
65 PF09789 DUF2353: Uncharacteri 47.5 1.8E+02 0.0038 26.7 9.3 104 20-137 34-143 (319)
66 PF03670 UPF0184: Uncharacteri 47.4 1.1E+02 0.0024 22.4 7.0 50 114-171 20-72 (83)
67 TIGR01069 mutS2 MutS2 family p 47.3 3.2E+02 0.007 28.1 12.2 52 119-170 538-589 (771)
68 PF09278 MerR-DNA-bind: MerR, 47.2 68 0.0015 21.3 5.3 49 116-165 14-62 (65)
69 PF03980 Nnf1: Nnf1 ; InterPr 47.1 60 0.0013 24.4 5.5 46 114-172 61-106 (109)
70 TIGR03752 conj_TIGR03752 integ 47.0 1.9E+02 0.0041 28.0 9.8 72 87-171 70-141 (472)
71 PF05700 BCAS2: Breast carcino 46.8 1.8E+02 0.004 24.8 9.1 69 86-161 146-218 (221)
72 TIGR02449 conserved hypothetic 46.8 97 0.0021 21.6 7.5 45 121-170 1-45 (65)
73 PF11365 DUF3166: Protein of u 46.4 38 0.00083 25.4 4.1 22 144-165 74-95 (96)
74 PF04849 HAP1_N: HAP1 N-termin 46.3 2.3E+02 0.005 25.8 11.4 53 119-171 96-185 (306)
75 cd00632 Prefoldin_beta Prefold 46.3 1.2E+02 0.0025 22.7 6.9 44 127-171 59-102 (105)
76 PF10186 Atg14: UV radiation r 45.6 2E+02 0.0044 24.9 10.5 10 55-64 11-20 (302)
77 KOG1853 LIS1-interacting prote 45.5 1.5E+02 0.0032 26.5 8.1 48 121-170 134-181 (333)
78 KOG4005 Transcription factor X 45.4 1.1E+02 0.0024 26.9 7.3 28 144-171 109-136 (292)
79 PF04859 DUF641: Plant protein 45.3 1.5E+02 0.0034 23.5 8.7 51 118-169 81-131 (131)
80 PF07888 CALCOCO1: Calcium bin 45.1 3E+02 0.0065 27.2 11.0 22 88-109 141-162 (546)
81 KOG3759 Uncharacterized RUN do 44.2 1.7E+02 0.0036 28.4 8.8 53 113-172 198-253 (621)
82 PF05812 Herpes_BLRF2: Herpesv 44.2 39 0.00084 26.4 3.9 26 147-172 4-29 (118)
83 PF05529 Bap31: B-cell recepto 44.1 1.4E+02 0.0031 24.6 7.8 53 119-171 124-186 (192)
84 KOG4643 Uncharacterized coiled 44.0 1.9E+02 0.0041 30.7 9.7 18 87-104 478-495 (1195)
85 PF11365 DUF3166: Protein of u 43.6 56 0.0012 24.6 4.6 32 142-173 11-42 (96)
86 PRK00888 ftsB cell division pr 43.4 64 0.0014 24.4 5.0 29 144-172 32-60 (105)
87 KOG0930 Guanine nucleotide exc 43.1 71 0.0015 28.9 5.9 43 114-165 8-50 (395)
88 cd01109 HTH_YyaN Helix-Turn-He 42.1 1.1E+02 0.0023 23.1 6.2 53 116-169 57-109 (113)
89 PF04880 NUDE_C: NUDE protein, 42.0 53 0.0011 27.2 4.7 43 122-169 2-47 (166)
90 COG0216 PrfA Protein chain rel 40.8 2.1E+02 0.0046 26.5 8.7 89 60-165 7-102 (363)
91 PF10473 CENP-F_leu_zip: Leuci 39.9 2E+02 0.0043 23.1 10.4 41 132-173 74-114 (140)
92 PF07851 TMPIT: TMPIT-like pro 39.8 2.1E+02 0.0045 26.4 8.6 44 90-139 4-47 (330)
93 COG4477 EzrA Negative regulato 39.7 3.4E+02 0.0073 26.8 10.2 60 114-174 372-431 (570)
94 PF08614 ATG16: Autophagy prot 39.6 2.2E+02 0.0048 23.6 10.2 22 149-170 161-182 (194)
95 PHA03162 hypothetical protein; 39.0 48 0.001 26.3 3.8 26 147-172 14-39 (135)
96 PRK00409 recombination and DNA 38.6 4.6E+02 0.01 27.0 12.4 51 119-169 543-593 (782)
97 PHA03155 hypothetical protein; 38.5 47 0.001 25.7 3.6 26 147-172 9-34 (115)
98 PF05812 Herpes_BLRF2: Herpesv 38.5 1.9E+02 0.0041 22.6 7.8 55 86-140 6-64 (118)
99 KOG4643 Uncharacterized coiled 38.3 92 0.002 32.9 6.6 45 128-172 282-327 (1195)
100 PF09730 BicD: Microtubule-ass 38.3 3.5E+02 0.0075 27.7 10.6 17 155-171 130-146 (717)
101 PRK13729 conjugal transfer pil 38.2 1.5E+02 0.0032 28.7 7.6 30 142-171 93-122 (475)
102 PHA03155 hypothetical protein; 38.1 1.9E+02 0.0041 22.4 7.7 56 85-140 10-65 (115)
103 PRK10803 tol-pal system protei 37.9 33 0.00071 30.3 3.1 53 57-109 33-87 (263)
104 cd04769 HTH_MerR2 Helix-Turn-H 37.6 91 0.002 23.7 5.2 54 116-169 56-109 (116)
105 PRK15422 septal ring assembly 37.0 1.1E+02 0.0024 22.1 5.1 32 140-171 12-43 (79)
106 KOG0837 Transcriptional activa 36.9 1.3E+02 0.0028 26.8 6.5 52 119-172 201-253 (279)
107 PF01920 Prefoldin_2: Prefoldi 36.8 1.6E+02 0.0035 21.3 7.7 27 145-171 75-101 (106)
108 PF13870 DUF4201: Domain of un 36.1 2.4E+02 0.0052 23.0 12.2 83 87-172 10-103 (177)
109 PF07544 Med9: RNA polymerase 35.5 1.7E+02 0.0036 21.0 7.1 26 86-111 24-49 (83)
110 KOG4603 TBP-1 interacting prot 35.3 2.7E+02 0.0058 23.3 8.5 54 82-135 78-134 (201)
111 PF13815 Dzip-like_N: Iguana/D 35.1 1.8E+02 0.004 22.2 6.6 22 146-167 94-115 (118)
112 KOG0250 DNA repair protein RAD 35.1 5E+02 0.011 27.8 11.2 25 83-107 661-685 (1074)
113 PF03428 RP-C: Replication pro 35.0 67 0.0015 26.8 4.3 63 41-109 96-170 (177)
114 PF09726 Macoilin: Transmembra 34.9 4.6E+02 0.0099 26.7 10.9 97 68-173 445-565 (697)
115 KOG0994 Extracellular matrix g 34.7 2.4E+02 0.0053 30.6 8.9 107 21-143 1176-1290(1758)
116 TIGR02209 ftsL_broad cell divi 34.6 1.1E+02 0.0023 21.6 4.9 30 143-172 28-57 (85)
117 KOG0963 Transcription factor/C 34.3 2.4E+02 0.0052 28.2 8.5 84 90-173 121-209 (629)
118 COG5068 ARG80 Regulator of arg 34.3 22 0.00048 33.4 1.5 59 8-72 18-77 (412)
119 COG1579 Zn-ribbon protein, pos 34.0 3.3E+02 0.0071 23.9 11.1 53 117-169 86-140 (239)
120 smart00338 BRLZ basic region l 33.8 1.2E+02 0.0025 20.5 4.7 26 144-169 38-63 (65)
121 PF09755 DUF2046: Uncharacteri 33.2 3.8E+02 0.0083 24.5 10.7 24 148-171 256-279 (310)
122 cd01107 HTH_BmrR Helix-Turn-He 32.9 1.7E+02 0.0037 21.8 6.0 48 116-169 58-105 (108)
123 KOG1853 LIS1-interacting prote 32.9 1.1E+02 0.0025 27.1 5.5 52 122-173 89-160 (333)
124 cd04787 HTH_HMRTR_unk Helix-Tu 32.7 1.6E+02 0.0035 22.9 6.0 53 116-169 57-109 (133)
125 COG0139 HisI Phosphoribosyl-AM 32.6 11 0.00025 29.0 -0.6 38 16-53 49-95 (111)
126 PF10243 MIP-T3: Microtubule-b 31.9 15 0.00033 35.8 0.0 92 32-145 434-527 (539)
127 PF04899 MbeD_MobD: MbeD/MobD 31.8 1.8E+02 0.004 20.4 7.4 47 124-170 3-52 (70)
128 PF09941 DUF2173: Uncharacteri 31.6 32 0.00069 26.4 1.7 27 32-59 3-29 (108)
129 PF09798 LCD1: DNA damage chec 31.4 2.3E+02 0.0049 28.7 7.9 51 121-171 5-58 (654)
130 KOG0946 ER-Golgi vesicle-tethe 31.4 5.2E+02 0.011 27.0 10.4 81 87-172 615-697 (970)
131 TIGR01950 SoxR redox-sensitive 31.4 1.1E+02 0.0024 24.3 4.9 54 116-169 57-110 (142)
132 PF08781 DP: Transcription fac 30.4 2.9E+02 0.0063 22.2 7.5 45 121-167 2-46 (142)
133 KOG0183 20S proteasome, regula 29.8 30 0.00066 29.9 1.4 19 41-59 4-24 (249)
134 PF12925 APP_E2: E2 domain of 29.8 3.5E+02 0.0075 23.0 9.8 92 61-172 7-100 (193)
135 PF10623 PilI: Plasmid conjuga 29.4 43 0.00093 24.2 1.9 30 42-71 8-40 (83)
136 TIGR03185 DNA_S_dndD DNA sulfu 29.4 5.8E+02 0.013 25.4 11.0 22 87-108 395-416 (650)
137 KOG2751 Beclin-like protein [S 29.1 2.5E+02 0.0055 26.8 7.4 25 120-144 200-224 (447)
138 PF04999 FtsL: Cell division p 29.0 1.4E+02 0.003 21.8 4.8 31 142-172 38-68 (97)
139 COG4831 Roadblock/LC7 domain [ 29.0 35 0.00075 25.7 1.4 29 30-59 3-31 (109)
140 PF07058 Myosin_HC-like: Myosi 28.9 4.6E+02 0.0099 24.1 9.3 74 87-171 11-84 (351)
141 PF01502 PRA-CH: Phosphoribosy 28.7 9.2 0.0002 27.4 -1.6 37 17-53 18-63 (75)
142 PF06937 EURL: EURL protein; 28.4 1.2E+02 0.0025 27.2 4.8 34 103-136 205-238 (285)
143 TIGR00606 rad50 rad50. This fa 28.3 6.3E+02 0.014 27.6 11.3 53 117-170 822-881 (1311)
144 PRK10227 DNA-binding transcrip 28.2 1.9E+02 0.0041 22.7 5.7 54 116-170 57-110 (135)
145 cd04770 HTH_HMRTR Helix-Turn-H 28.2 2E+02 0.0043 21.8 5.7 53 116-169 57-109 (123)
146 PF06785 UPF0242: Uncharacteri 28.1 3.5E+02 0.0076 25.1 7.9 42 129-171 132-173 (401)
147 cd04776 HTH_GnyR Helix-Turn-He 28.1 2.7E+02 0.0059 21.2 6.5 55 116-171 55-112 (118)
148 COG4917 EutP Ethanolamine util 28.0 34 0.00075 27.4 1.4 24 35-58 59-82 (148)
149 cd01108 HTH_CueR Helix-Turn-He 27.8 2.1E+02 0.0046 22.0 5.9 53 116-169 57-109 (127)
150 TIGR02449 conserved hypothetic 27.7 1.7E+02 0.0037 20.3 4.7 28 144-171 5-32 (65)
151 KOG0709 CREB/ATF family transc 27.7 98 0.0021 29.8 4.5 22 150-171 290-311 (472)
152 PF09158 MotCF: Bacteriophage 27.3 16 0.00035 27.7 -0.6 53 5-72 19-72 (103)
153 PTZ00108 DNA topoisomerase 2-l 27.1 4.4E+02 0.0096 29.2 9.7 122 45-168 963-1154(1388)
154 KOG0182 20S proteasome, regula 27.1 34 0.00073 29.5 1.3 17 40-56 8-24 (246)
155 PHA01750 hypothetical protein 27.1 2.2E+02 0.0049 19.9 6.7 11 144-154 61-71 (75)
156 COG4026 Uncharacterized protei 26.6 3.4E+02 0.0073 23.8 7.2 9 111-119 97-105 (290)
157 TIGR03007 pepcterm_ChnLen poly 26.6 5.6E+02 0.012 24.3 10.1 71 62-132 140-216 (498)
158 TIGR02047 CadR-PbrR Cd(II)/Pb( 26.5 2.3E+02 0.0049 21.9 5.8 53 116-169 57-109 (127)
159 cd01282 HTH_MerR-like_sg3 Heli 26.5 2E+02 0.0044 21.6 5.5 51 116-167 56-109 (112)
160 KOG0977 Nuclear envelope prote 26.5 4.6E+02 0.01 25.9 9.0 18 87-104 110-127 (546)
161 PRK05561 DNA topoisomerase IV 26.2 7.3E+02 0.016 25.5 11.5 103 44-161 337-459 (742)
162 PF14662 CCDC155: Coiled-coil 26.2 4.1E+02 0.0088 22.6 10.1 18 87-104 40-57 (193)
163 PF07558 Shugoshin_N: Shugoshi 26.2 87 0.0019 20.1 2.8 32 139-170 14-45 (46)
164 PRK09514 zntR zinc-responsive 25.8 2E+02 0.0042 22.7 5.4 53 116-169 58-111 (140)
165 PRK09413 IS2 repressor TnpA; R 25.7 1.7E+02 0.0036 22.4 4.9 28 144-171 76-103 (121)
166 PF05130 FlgN: FlgN protein; 25.6 2.8E+02 0.0061 20.8 6.3 26 146-171 88-113 (143)
167 PF03785 Peptidase_C25_C: Pept 25.6 31 0.00068 25.1 0.7 24 33-56 17-40 (81)
168 KOG0971 Microtubule-associated 25.2 6.8E+02 0.015 26.6 10.0 38 62-104 380-417 (1243)
169 PF11629 Mst1_SARAH: C termina 25.2 1.1E+02 0.0024 20.1 3.1 18 114-131 5-22 (49)
170 PHA03162 hypothetical protein; 25.1 3.5E+02 0.0077 21.5 10.1 57 85-141 15-75 (135)
171 PLN03128 DNA topoisomerase 2; 25.0 4.2E+02 0.0091 28.7 9.0 27 44-72 961-987 (1135)
172 PF07676 PD40: WD40-like Beta 24.9 71 0.0015 18.8 2.2 18 42-59 10-27 (39)
173 PF00521 DNA_topoisoIV: DNA gy 24.9 1.4E+02 0.0031 28.1 5.2 63 3-72 243-315 (426)
174 PLN03230 acetyl-coenzyme A car 24.9 3.4E+02 0.0073 26.0 7.5 42 90-136 80-121 (431)
175 cd04785 HTH_CadR-PbrR-like Hel 24.8 2.5E+02 0.0053 21.6 5.8 54 116-170 57-110 (126)
176 TIGR02051 MerR Hg(II)-responsi 24.8 3.2E+02 0.0069 20.9 6.5 51 116-169 56-106 (124)
177 TIGR02231 conserved hypothetic 24.8 6.3E+02 0.014 24.3 11.0 46 115-161 122-167 (525)
178 TIGR02044 CueR Cu(I)-responsiv 24.7 2.5E+02 0.0054 21.6 5.8 54 116-170 57-110 (127)
179 COG4026 Uncharacterized protei 24.6 4.8E+02 0.01 22.9 9.9 11 39-49 56-66 (290)
180 KOG0184 20S proteasome, regula 24.6 38 0.00082 29.4 1.1 24 36-59 3-28 (254)
181 PF11232 Med25: Mediator compl 24.4 66 0.0014 26.2 2.4 23 37-59 109-132 (152)
182 PF14915 CCDC144C: CCDC144C pr 24.4 5.4E+02 0.012 23.4 10.2 79 87-171 3-81 (305)
183 PRK15002 redox-sensitivie tran 24.1 2E+02 0.0043 23.3 5.2 52 116-167 67-118 (154)
184 PF12018 DUF3508: Domain of un 24.0 35 0.00076 30.4 0.9 33 19-61 210-242 (281)
185 KOG2129 Uncharacterized conser 24.0 3.9E+02 0.0085 25.6 7.6 50 114-170 176-225 (552)
186 TIGR02043 ZntR Zn(II)-responsi 23.8 2.1E+02 0.0046 22.2 5.2 53 116-169 58-111 (131)
187 KOG4360 Uncharacterized coiled 23.7 3E+02 0.0065 27.0 7.0 26 144-169 238-263 (596)
188 cd01106 HTH_TipAL-Mta Helix-Tu 23.7 2.8E+02 0.006 20.3 5.7 15 116-130 57-71 (103)
189 PF07407 Seadorna_VP6: Seadorn 23.6 2E+02 0.0043 26.6 5.5 45 113-171 25-69 (420)
190 PF04645 DUF603: Protein of un 23.6 4.4E+02 0.0095 22.0 8.2 45 120-164 112-156 (181)
191 KOG0243 Kinesin-like protein [ 23.5 5.3E+02 0.011 27.6 9.2 58 87-144 408-472 (1041)
192 KOG3119 Basic region leucine z 23.4 1.8E+02 0.004 25.7 5.3 26 149-174 218-243 (269)
193 PRK09039 hypothetical protein; 23.2 5.9E+02 0.013 23.4 9.1 32 122-158 153-184 (343)
194 PF09388 SpoOE-like: Spo0E lik 22.8 1.8E+02 0.0039 18.2 3.8 39 95-135 2-40 (45)
195 cd04783 HTH_MerR1 Helix-Turn-H 22.8 2.6E+02 0.0057 21.4 5.5 51 116-169 57-107 (126)
196 PF04873 EIN3: Ethylene insens 22.8 28 0.00061 32.3 0.0 39 25-63 53-92 (354)
197 PF14197 Cep57_CLD_2: Centroso 22.7 2.7E+02 0.0059 19.4 9.2 19 88-106 3-21 (69)
198 cd01110 HTH_SoxR Helix-Turn-He 22.3 2.6E+02 0.0056 22.0 5.5 53 116-169 57-110 (139)
199 PF06810 Phage_GP20: Phage min 22.2 3.8E+02 0.0082 21.7 6.5 42 120-163 27-68 (155)
200 PF14817 HAUS5: HAUS augmin-li 22.2 8.2E+02 0.018 24.7 11.3 76 87-171 83-160 (632)
201 PLN03237 DNA topoisomerase 2; 22.1 1.1E+03 0.025 26.3 12.1 125 45-171 989-1181(1465)
202 PF07798 DUF1640: Protein of u 22.0 4.4E+02 0.0096 21.5 8.0 18 120-137 47-64 (177)
203 PRK14127 cell division protein 21.9 2.1E+02 0.0046 21.9 4.7 46 113-173 19-64 (109)
204 PF12537 DUF3735: Protein of u 21.8 1.5E+02 0.0033 20.6 3.6 25 119-143 47-71 (72)
205 PF02145 Rap_GAP: Rap/ran-GAP; 21.7 61 0.0013 27.1 1.8 31 16-59 69-99 (188)
206 PF11802 CENP-K: Centromere-as 21.6 5.9E+02 0.013 22.8 8.7 54 88-141 57-113 (268)
207 PF04566 RNA_pol_Rpb2_4: RNA p 21.5 35 0.00076 23.4 0.3 31 22-54 23-54 (63)
208 PF12718 Tropomyosin_1: Tropom 21.4 4.2E+02 0.0092 21.1 10.8 19 151-169 113-131 (143)
209 PF10491 Nrf1_DNA-bind: NLS-bi 21.4 92 0.002 26.7 2.8 49 25-73 34-89 (214)
210 PF15372 DUF4600: Domain of un 21.3 4.2E+02 0.0091 21.0 8.1 70 87-167 19-90 (129)
211 PF10267 Tmemb_cc2: Predicted 20.9 3.4E+02 0.0073 25.7 6.7 63 87-158 8-74 (395)
212 PRK10869 recombination and rep 20.8 8.1E+02 0.017 24.0 9.7 70 91-171 297-366 (553)
213 KOG2129 Uncharacterized conser 20.7 7.6E+02 0.017 23.7 11.4 28 144-171 276-303 (552)
214 KOG3612 PHD Zn-finger protein 20.7 3.1E+02 0.0068 27.0 6.5 92 35-141 404-499 (588)
215 PLN02372 violaxanthin de-epoxi 20.6 7.6E+02 0.016 23.7 9.0 42 92-145 363-404 (455)
216 PF10226 DUF2216: Uncharacteri 20.6 4.1E+02 0.0088 22.6 6.4 62 108-169 7-78 (195)
217 cd04779 HTH_MerR-like_sg4 Heli 20.5 4.3E+02 0.0093 20.8 7.4 51 116-167 56-109 (134)
218 TIGR03752 conj_TIGR03752 integ 20.5 7.9E+02 0.017 23.9 9.2 72 87-171 63-134 (472)
219 COG3883 Uncharacterized protei 20.2 5.4E+02 0.012 22.9 7.5 47 120-171 45-91 (265)
220 TIGR01478 STEVOR variant surfa 20.1 1.3E+02 0.0027 27.2 3.5 44 7-71 25-69 (295)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=8e-40 Score=275.80 Aligned_cols=162 Identities=48% Similarity=0.687 Sum_probs=133.0
Q ss_pred CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccc--cchhhhhhhhhcCCCCC
Q 037149 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG--INKTLERYQRCCFNPQD 78 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~s--m~~ileRY~~~~~~~~~ 78 (244)
|||+||+|+||+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ |..+++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999966 99999999987655433
Q ss_pred C-Cchhhh---------------------HHhHHHHHHHHHHHHHHhh---hhhhhccCCCCCCCH-HHHHHHHHHHHHH
Q 037149 79 N-SIERET---------------------QSWYQEATKLKAKYESLQR---TQRHLLGEDLGPLSV-KELQNLEKQLEGA 132 (244)
Q Consensus 79 ~-~~~~e~---------------------q~l~~E~~kLk~kie~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~~Le~s 132 (244)
. ....+. +.+..+...++...+.++. ..+++.|++|.+++. .+|..++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 2 111111 1133444555555555553 378999999999999 9999999999999
Q ss_pred HHHHHHHHhhhhHHHHH-HHHHHHHHHHHHH
Q 037149 133 LALARQRKTQIMIEQVE-DLRKKERQLGDIN 162 (244)
Q Consensus 133 L~~IR~rK~ql~~e~i~-~Lkkke~~L~eeN 162 (244)
+..+|..+...+.+++. .++.++..+.+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN 191 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence 99999999999998887 6666655554443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=1.2e-33 Score=204.86 Aligned_cols=74 Identities=74% Similarity=1.090 Sum_probs=71.9
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhcCC
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFN 75 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~~~ 75 (244)
||+||+|++|||+.+|++||+||++||||||+||||||||+||||||||+|++|+|+||++.+||+||...+..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~ 74 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGS 74 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=2.1e-30 Score=190.50 Aligned_cols=75 Identities=51% Similarity=0.800 Sum_probs=70.7
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccc-cchhhhhhhhhcCCC
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-INKTLERYQRCCFNP 76 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~s-m~~ileRY~~~~~~~ 76 (244)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|++++ +..+|+||...+...
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALE 76 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhh
Confidence 899999999999999999999999999999999999999999999999999999998855 999999998876543
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=8.4e-30 Score=174.88 Aligned_cols=59 Identities=80% Similarity=1.169 Sum_probs=57.8
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeeccc
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~ 60 (244)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=4.6e-29 Score=171.32 Aligned_cols=59 Identities=78% Similarity=1.164 Sum_probs=57.5
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeeccc
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~ 60 (244)
||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++|+|+++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999864
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.93 E-value=9.4e-28 Score=159.70 Aligned_cols=51 Identities=69% Similarity=1.023 Sum_probs=47.2
Q ss_pred eeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc
Q 037149 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59 (244)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s 59 (244)
|+|+|+..|++||+|||.||||||+|||+||||+||||||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999987
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.84 E-value=1.8e-20 Score=142.50 Aligned_cols=91 Identities=52% Similarity=0.739 Sum_probs=86.6
Q ss_pred chhhhHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 037149 81 IERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGD 160 (244)
Q Consensus 81 ~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~e 160 (244)
.+...+.|..++.+|+.+++.|+..+|+++|+||++||++||++||++|+.+|.+||+||+++|.++|..|++|++.|.+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 037149 161 INKQLRIKLET 171 (244)
Q Consensus 161 eN~~L~~k~~~ 171 (244)
+|..|+.++.|
T Consensus 90 en~~L~~~~~e 100 (100)
T PF01486_consen 90 ENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.77 E-value=1.1e-19 Score=158.52 Aligned_cols=66 Identities=42% Similarity=0.761 Sum_probs=63.5
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhh
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLE 67 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ile 67 (244)
||.||+|++|||+..|.|||||||.|+||||+|||||.+.+|-|+|.|.+|-+|.|+++.++.||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999998877774
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.47 E-value=2.4e-14 Score=130.34 Aligned_cols=67 Identities=37% Similarity=0.607 Sum_probs=63.6
Q ss_pred CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhh
Q 037149 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLE 67 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ile 67 (244)
|||+|+.|..|+|+..|.|||+||+.|++|||+||+||.+.+|.|+|.|.+|+++.|++|..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999987666653
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.85 E-value=0.37 Score=34.30 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+|++.|.+||..+..++..|.. +..++..|+.+-..|.++|..|+.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5788999999999999999854 5567788888877777777777766544
No 11
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.39 E-value=9.8 Score=29.94 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 127 KQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 127 ~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
..|+.+-..--.+|. .+..++..++++...|.++|+.|..+|+.
T Consensus 87 ~~l~~~e~sw~~qk~-~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 87 AELEESEASWEEQKE-QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333334443 45788999999999999999999998864
No 12
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=88.10 E-value=0.86 Score=35.01 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 146 EQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.++..||+|.+.|+|||+.|+-|++-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888899999999999998863
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.96 E-value=1.1 Score=30.66 Aligned_cols=31 Identities=42% Similarity=0.508 Sum_probs=25.4
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037149 108 HLLGEDLGPLSVKELQNLEKQLEGALALARQ 138 (244)
Q Consensus 108 ~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~ 138 (244)
+.+|+||+.||++||..--..|+.=+.+++.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999877777776666654
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.94 E-value=8.6 Score=27.77 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
+|++=|.+||..+..++..|- |+.=+|++||.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888777762 3444556666555555555444
No 15
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=86.85 E-value=0.16 Score=28.06 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=12.0
Q ss_pred ceeeeeeecCCCcee
Q 037149 42 EVALIIFSSRGKLYE 56 (244)
Q Consensus 42 eValIvfS~~gkl~e 56 (244)
|-.+.+|||+|++|.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345679999999985
No 16
>PRK04098 sec-independent translocase; Provisional
Probab=85.99 E-value=0.3 Score=39.99 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=18.7
Q ss_pred ceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 42 EVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 42 eValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
=||||||+| +||+++.- .+-+.+-.+++.
T Consensus 14 vVaLlvfGP-~KLP~~~r-~lGk~ir~~K~~ 42 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV-DIAKFFKAVKKT 42 (158)
T ss_pred HHHHhhcCc-hHHHHHHH-HHHHHHHHHHHH
Confidence 589999998 48876542 344555555554
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.38 E-value=15 Score=33.48 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 112 EDLGPLSVKELQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 112 edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
.+++.++..+|..+-..|...-..|..+|..+ +..++..++.+...+.++-..+...|.+.+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999998877765 556777777777777777777777776543
No 18
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.31 E-value=22 Score=30.12 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=52.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037149 86 QSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQL 165 (244)
Q Consensus 86 q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L 165 (244)
+.+..|..+|+..++.+......+ ..|+..|..++-+.=.- ..+...+.+++++|+.--..|.|+|+.|
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L---------~~e~~~L~~q~~s~Qqa--l~~aK~l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQL---------AEEITDLRKQLKSLQQA--LQKAKALEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888777666655 34566666666544322 3344567788888888888888888888
Q ss_pred HHHHHhccc
Q 037149 166 RIKLETEGQ 174 (244)
Q Consensus 166 ~~k~~~~~~ 174 (244)
..+....+.
T Consensus 87 ~aq~rqlEk 95 (193)
T PF14662_consen 87 LAQARQLEK 95 (193)
T ss_pred HHHHHHHHH
Confidence 777665443
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.92 E-value=5 Score=36.52 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhhhhhc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 95 LKAKYESLQRTQRHLL--GEDLGPLSVKELQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 95 Lk~kie~Lq~~~r~l~--GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+..+...|+.+..++. -++++.++.++|..+-..|..-...|...+.++ +.+++..+..+.....+.-..+...|.
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433332 346788999999999999999999888777765 446666666666666666666666665
Q ss_pred hc
Q 037149 171 TE 172 (244)
Q Consensus 171 ~~ 172 (244)
+.
T Consensus 257 ~a 258 (312)
T smart00787 257 EA 258 (312)
T ss_pred HH
Confidence 53
No 20
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.62 E-value=10 Score=29.20 Aligned_cols=48 Identities=29% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++.|.+||+++...+..+..-| .++..|-..-..|.-||..|++.+.+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK-----~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALK-----KQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888777776665544 33344444455566666666666665
No 21
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.60 E-value=3 Score=28.36 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRIK 168 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~k 168 (244)
.+.++|.+|..+...|+.||..|+..
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666666666666666666553
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.55 E-value=25 Score=30.08 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhhh
Q 037149 87 SWYQEATKLKAKYESLQRTQRH 108 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~ 108 (244)
.....+.+++.+++.++....+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666554444
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.20 E-value=12 Score=28.63 Aligned_cols=48 Identities=31% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++.|.+||++|..-+..|..-| .++..|-..=..|.-||..|+..+.+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555554332 22233333333444445555555544
No 24
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.30 E-value=18 Score=25.57 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
+|++=|..||..+..++.-| +|+.=+|++||.|-..|..+-..++...
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 46777888888888877776 3455566666666555555544444433
No 25
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.50 E-value=24 Score=33.65 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIK 168 (244)
Q Consensus 120 ~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k 168 (244)
++|.+.-..++. .+.|-++|.+-+...++.+++..+.+.|+|+.|.+-
T Consensus 364 ~~l~~~~~~~e~-~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 364 DSLKQESSDLEA-EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333443334443 344456666667888899999999999999988763
No 26
>PRK11637 AmiB activator; Provisional
Probab=78.12 E-value=42 Score=31.64 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQR 139 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~r 139 (244)
.+..++..++.++..++.....+ ..+|..++.+|...-..|+..
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~ 94 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRET 94 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444432 344555555555555555444
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.67 E-value=19 Score=27.52 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.|.++|..||.....|.|||..|+.+-+.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999986654
No 28
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=73.64 E-value=16 Score=28.06 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++.+.+||.+|-..+..|-.-|.++ ..|-..-..|+=||..|++.+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 5677888888877776664433222 22222223344444445555544
No 29
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.07 E-value=25 Score=28.62 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKT 141 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ 141 (244)
.+..++..|+..+..|+.+...+. ..++..||...-.+|..-+..+.+|-.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544443 345666666655555555555544433
No 30
>PRK13824 replication initiation protein RepC; Provisional
Probab=69.95 E-value=14 Score=34.88 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=57.0
Q ss_pred cceeeeee--ecCCCceeecc-c---------ccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhh
Q 037149 41 AEVALIIF--SSRGKLYEFGS-A---------GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRH 108 (244)
Q Consensus 41 aeValIvf--S~~gkl~ef~s-~---------sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~ 108 (244)
+|++||++ ||+||=|-+-. . ++..++.||...... ..+.+.-..++..|+.++..+.+..+.
T Consensus 108 veaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~------A~~~~ae~~~~r~lr~~it~~rRdi~~ 181 (404)
T PRK13824 108 VEAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEAL------AEQVAAERKALRRLRERLTLCRRDIAK 181 (404)
T ss_pred HHCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888 89999986543 1 256677777664321 112223455677788888888887776
Q ss_pred hccCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 037149 109 LLGEDLG-PLSVKELQNLEKQLEGALALARQR 139 (244)
Q Consensus 109 l~GedL~-~Ls~~EL~~LE~~Le~sL~~IR~r 139 (244)
++..-++ +++ -+...++..++..+..++.+
T Consensus 182 li~~a~~~~~~-~~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 182 LIEAAIEEGVP-GDWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHhccCC-CcHHHHHHHHHHHHHHcCCC
Confidence 6532111 111 14777888888888777744
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.64 E-value=29 Score=29.66 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHhhh
Q 037149 86 QSWYQEATKLKAKYESLQRT 105 (244)
Q Consensus 86 q~l~~E~~kLk~kie~Lq~~ 105 (244)
..+..|+.+++.++..+...
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 46777777777777766554
No 32
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.22 E-value=26 Score=26.96 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
+.++|.+|-.+...|++||..|+.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555543
No 33
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.37 E-value=32 Score=28.89 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=12.9
Q ss_pred cCCCceeecccccchhhhhhhhhc
Q 037149 50 SRGKLYEFGSAGINKTLERYQRCC 73 (244)
Q Consensus 50 ~~gkl~ef~s~sm~~ileRY~~~~ 73 (244)
..|-|..-.-..+..+|++|....
T Consensus 81 ERGlLL~rvrde~~~~l~~y~~l~ 104 (189)
T PF10211_consen 81 ERGLLLLRVRDEYRMTLDAYQTLY 104 (189)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355554433344666677776543
No 34
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=67.07 E-value=34 Score=26.34 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
.|.+++..||.....|.|||..|+..-+
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988643
No 35
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.48 E-value=54 Score=24.79 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 125 LEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 125 LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++...+.++..+..|+..+ ...|..|.++...|.+.-..++.++.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665443 667777777777777777776666654
No 36
>PF14645 Chibby: Chibby family
Probab=65.92 E-value=10 Score=29.46 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
......++++.+.|+|||+.|+-|++
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999998875
No 37
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=65.09 E-value=65 Score=30.84 Aligned_cols=60 Identities=20% Similarity=0.456 Sum_probs=36.2
Q ss_pred ceeeecCCccc-chhhh---hhc-------chhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 7 ELKRIENKINR-QVTFS---KRR-------NGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 7 ~ik~Ien~~~R-qvTFs---KRr-------~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
.|.-|.+.+.| .|.|- ||. ++|+|+ ..|.+-- -+-+++|.++|++-.| ++.+||..|-.+
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~-t~L~~s~--~~Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV-TKLQTTF--GINMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh-cCCceee--eeeEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 46666676666 34442 222 355533 2232221 1267888889999988 688888888665
No 38
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=64.13 E-value=89 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
.+.+++.....|+++...|..+|.+.+.
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666777777777777776543
No 39
>smart00338 BRLZ basic region leucin zipper.
Probab=63.65 E-value=35 Score=23.16 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 133 LALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 133 L~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
-..-|.||. ..+..|..+...|..+|..|+.++....
T Consensus 17 A~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 17 ARRSRERKK----AEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566664 4668889999999999999999887643
No 40
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=61.73 E-value=42 Score=27.48 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+..+..+|..+...|+++|+.|..++..
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455567888888889999998877754
No 41
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.73 E-value=42 Score=22.67 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 133 LALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 133 L~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
-..-|.||. ..+..|..+...|..+|..|...+...
T Consensus 17 Ar~~R~RKk----~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 17 ARRSRQRKK----QYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566664 456788888888888888888877653
No 42
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=59.49 E-value=47 Score=21.72 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 133 LALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 133 L~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
-.+-|.||. ..+..|..+...|..+|..|..++..
T Consensus 16 A~r~R~rkk----~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 16 ARRSRQRKK----QREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455553 45678888889999999999888765
No 43
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.03 E-value=63 Score=29.42 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 122 LQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 122 L~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+..|..-|............++ +..+|-+|++|.+.+.-||-.|...+...
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444554444444444443 56788889999999999999999888763
No 44
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=58.64 E-value=17 Score=27.84 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 127 KQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 127 ~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
+.++-++.-|+..-+--.-++++-|+.+.+.|.+.|..|+.+-
T Consensus 48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444445899999999999999999998753
No 45
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=58.31 E-value=36 Score=32.53 Aligned_cols=74 Identities=18% Similarity=0.364 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALAR---------QRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ-SFKAIQDL 182 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR---------~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~~-~~~~~~~~ 182 (244)
+|..||..--..+.+.+.+||.-|+ +.+.+-|+..++..+++.+.....-+....+|+|.+. ........
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~l 81 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMAL 81 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444556666666666664 3334456667777766655555555666777777532 11224456
Q ss_pred hhhc
Q 037149 183 WNSA 186 (244)
Q Consensus 183 ~~~~ 186 (244)
|+.+
T Consensus 82 WeEC 85 (436)
T PF01093_consen 82 WEEC 85 (436)
T ss_pred HHHH
Confidence 8753
No 46
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.15 E-value=10 Score=25.77 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
.++++-||.+...|.+.|..|..+-
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999997754
No 47
>smart00340 HALZ homeobox associated leucin zipper.
Probab=56.66 E-value=24 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 149 EDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 149 ~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
+.|++=-..|-+||+.|++++++-.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777889999999999998843
No 48
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.45 E-value=1e+02 Score=30.79 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALAR-----QRKTQIMIEQVEDLRKKERQLGDI 161 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR-----~rK~ql~~e~i~~Lkkke~~L~ee 161 (244)
....++.++..+++.|+.++++|-.+ +..| -+++..|+..|+..-..++ .|+-+.+...|..|+++-..-...
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~-k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRE-LEEL-KREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777766666655432 0000 1555666666666655554 344445666666676665555555
Q ss_pred HHHHHHHHHh
Q 037149 162 NKQLRIKLET 171 (244)
Q Consensus 162 N~~L~~k~~~ 171 (244)
-..|..++.+
T Consensus 497 ve~L~~~l~~ 506 (652)
T COG2433 497 VEELERKLAE 506 (652)
T ss_pred HHHHHHHHHH
Confidence 5566666554
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.13 E-value=1.7e+02 Score=30.71 Aligned_cols=53 Identities=32% Similarity=0.373 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhh------ccCCCCCCCHHHHHHHHHH---HHHHHHHHHH
Q 037149 86 QSWYQEATKLKAKYESLQRTQRHL------LGEDLGPLSVKELQNLEKQ---LEGALALARQ 138 (244)
Q Consensus 86 q~l~~E~~kLk~kie~Lq~~~r~l------~GedL~~Ls~~EL~~LE~~---Le~sL~~IR~ 138 (244)
+.+++|+.-++++++.|....--+ -|.|.-..|.=++.+||+| |-.+|-+.|.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888765443211 2667667777777777766 6667766664
No 50
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.69 E-value=1.7e+02 Score=29.22 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHhh
Q 037149 88 WYQEATKLKAKYESLQR 104 (244)
Q Consensus 88 l~~E~~kLk~kie~Lq~ 104 (244)
|..++..++.+++.|+.
T Consensus 441 L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 441 LKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 51
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.20 E-value=1.2e+02 Score=27.90 Aligned_cols=43 Identities=33% Similarity=0.372 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 129 LEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 129 Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
|...|...|.+-. -+..++..|+.+...++..++.|+.++...
T Consensus 70 La~lL~~sre~Nk-~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 70 LAQLLSESREQNK-KLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3344555566543 456889999999999999999999998763
No 52
>smart00030 CLb CLUSTERIN Beta chain.
Probab=53.80 E-value=62 Score=27.60 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKT---------QIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ-SFKAIQDL 182 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~---------ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~~-~~~~~~~~ 182 (244)
+|..+|..-=..+.+++++||.-|..-|+ +-|+..++..+++.......-+....+|++.+. ........
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~al 87 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMAL 87 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556677778888877754443 345566666665544444444455667766432 11223457
Q ss_pred hhhc
Q 037149 183 WNSA 186 (244)
Q Consensus 183 ~~~~ 186 (244)
|+.+
T Consensus 88 WeEC 91 (206)
T smart00030 88 WEEC 91 (206)
T ss_pred HHHh
Confidence 8753
No 53
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.27 E-value=81 Score=27.25 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 119 VKELQNLEKQLEGALALARQRKTQ--IMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~q--l~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
..|+..|+..++..-+......++ -|..+.+.+++.-..|.|+|..|+.+++-
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 455566666655555544433333 34556666666666677777777776654
No 54
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.56 E-value=1.6e+02 Score=29.08 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
..+..+++.+...|.++...|..+.
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 55
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=52.49 E-value=71 Score=26.24 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHH
Q 037149 118 SVKELQNLEKQLEGALALARQR---KTQIMIEQVEDLRKKERQLGD 160 (244)
Q Consensus 118 s~~EL~~LE~~Le~sL~~IR~r---K~ql~~e~i~~Lkkke~~L~e 160 (244)
+..+|..|-++++.+-..+|.+ |-.++.+||..||.+-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999888888865 555666777777666554444
No 56
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.21 E-value=52 Score=23.27 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 139 RKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 139 rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.|.+-..+.|..|+.+...|.++|..|.....+
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~ 43 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEE 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355556799999999999999999999866554
No 57
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.41 E-value=88 Score=25.76 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=25.4
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037149 84 ETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALA 136 (244)
Q Consensus 84 e~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~I 136 (244)
+.+.+..++.+|+.+++.|+.++..+ .+++..++...+.-+..+
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L---------~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKL---------RQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 33466677777777777777765544 344455555554444333
No 58
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=51.03 E-value=2.2e+02 Score=29.28 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhh------ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 037149 86 QSWYQEATKLKAKYESLQRTQRHL------LGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLG 159 (244)
Q Consensus 86 q~l~~E~~kLk~kie~Lq~~~r~l------~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~ 159 (244)
|-++-|.+.|+.++..|....|.- -|..=-+|-+--|+.|-..|++-|..-..- -+++...-++|-|-...+.
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~-~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKS-QELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHh-HHHHHHhHHHHHHHHHHHH
Confidence 456667777777666665444321 111111333455555544444444432211 1244455566777777788
Q ss_pred HHHHHHHHHHHhccc
Q 037149 160 DINKQLRIKLETEGQ 174 (244)
Q Consensus 160 eeN~~L~~k~~~~~~ 174 (244)
+||+.|.+.+.+.+.
T Consensus 469 ~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQ 483 (861)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889888888777543
No 59
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.34 E-value=1.4e+02 Score=26.50 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 138 QRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 138 ~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.+.++.|..+|...++-+..|.++...|+..++.
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666776666777777777777776655
No 60
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.51 E-value=1.2e+02 Score=23.43 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 129 LEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 129 Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.+.+...+..|+. .+...|..|.+++..|++.-..++.+|.+
T Consensus 69 ~~e~~~~l~~r~E-~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 69 KTKVEKELKERKE-LLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544433 33466777777777777777777766655
No 61
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.48 E-value=39 Score=23.36 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+..++..|+++...+..+|..|..+++..
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778999999999999999999998875
No 62
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.33 E-value=2.1e+02 Score=26.03 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 90 QEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 90 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
.++..+..+++.|+.+...+ .++|..||+.-+.....+++ +..+...++..|...-.+.+.+...+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l---------~~eL~~LE~e~~~l~~el~~-----le~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEEL---------LQELEELEKEREELDQELEE-----LEEELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443 56677777766666655554 23455666666666666666665555
Q ss_pred Hh
Q 037149 170 ET 171 (244)
Q Consensus 170 ~~ 171 (244)
.+
T Consensus 109 ~~ 110 (314)
T PF04111_consen 109 IE 110 (314)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=49.30 E-value=1.4e+02 Score=28.49 Aligned_cols=43 Identities=12% Similarity=0.302 Sum_probs=28.6
Q ss_pred cchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 25 RNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 25 r~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
-++|+|+ ..|.+- .-+-+++|+++|++..| .++.+||..|-.+
T Consensus 284 ~~~L~k~-~~L~~~--~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~ 326 (439)
T PHA02592 284 HEKIMKD-FGLIER--VSQNITVINENGKLKVY--ENAEDLIRDFVEI 326 (439)
T ss_pred HHHHHHh-cCchhe--eeeeEEEEecCCeeeec--CCHHHHHHHHHHH
Confidence 3466654 233222 23778899999999888 4678888887654
No 64
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.90 E-value=1.6e+02 Score=24.29 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 114 LGPLSVKELQNLEKQLEGALALARQR--KTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~sL~~IR~r--K~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
...|++++....-+.|.........- -++-+.+++..|+.+...|..+|..|.+++...
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999888888887653322221 123456788888888888888888888877653
No 65
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.49 E-value=1.8e+02 Score=26.71 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=59.4
Q ss_pred hhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeec--c-cccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHH
Q 037149 20 TFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG--S-AGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLK 96 (244)
Q Consensus 20 TFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~--s-~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk 96 (244)
++..|..+|-||-.|+--.|+ ..|.+--++ . .++..+|..++.... ....+...+.+.+..++
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~Nk-----~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQNK-----KLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 566788888888888763321 122222222 2 457788888776432 24456668888888888
Q ss_pred HHHHHHhhhhhhh--ccCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 037149 97 AKYESLQRTQRHL--LGEDLGPLS-VKELQNLEKQLEGALALAR 137 (244)
Q Consensus 97 ~kie~Lq~~~r~l--~GedL~~Ls-~~EL~~LE~~Le~sL~~IR 137 (244)
..+..|+...... .++.++... +.|=.+|-.+||.+-.++.
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 8888887654322 222232222 2555555555555544443
No 66
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=47.45 E-value=1.1e+02 Score=22.37 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 114 LGPLSVKELQNLE---KQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 114 L~~Ls~~EL~~LE---~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.+..+..|...+. .+|..+|..+..| .+.|..+.+.|.+.|+.-+.++++
T Consensus 20 ~~e~~~~E~~~ins~LD~Lns~LD~LE~r--------nD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 20 DDEFDEEEYAAINSMLDQLNSCLDHLEQR--------NDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444 3445566666555 355666778889999999998876
No 67
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.27 E-value=3.2e+02 Score=28.08 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
..++..+...|+..+..++.+|.+++.+--.+.++-.+.+.++-..+-+++.
T Consensus 538 ~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 538 LKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777655555544444444444444333333
No 68
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=47.20 E-value=68 Score=21.31 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQL 165 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L 165 (244)
|+|++|+.++-...+..-....... +++.+++..+.++...|..--..|
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887633222222222222 455566666666655555443333
No 69
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=47.12 E-value=60 Score=24.37 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 114 LGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
..+++.+++- ++.-......+++.|..+...+..+|..|...|.+.
T Consensus 61 ~~~l~P~~~i-------------~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 61 RHSLTPEEDI-------------RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCChHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567776653 333333446778999999999999999999999764
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.05 E-value=1.9e+02 Score=27.96 Aligned_cols=72 Identities=24% Similarity=0.364 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~ 166 (244)
.++.++..|..+++.|..++..| -+...++..++..++...|. -+.++...|+.....++..-..|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L---------~~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERL---------QKREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444333 12233455666666666543 345667777777777777777777
Q ss_pred HHHHh
Q 037149 167 IKLET 171 (244)
Q Consensus 167 ~k~~~ 171 (244)
.++..
T Consensus 137 ~~l~~ 141 (472)
T TIGR03752 137 RRLAG 141 (472)
T ss_pred HHHhh
Confidence 77754
No 71
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=46.83 E-value=1.8e+02 Score=24.79 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH--hhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHH
Q 037149 86 QSWYQEATKLKAKYESL--QRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDI 161 (244)
Q Consensus 86 q~l~~E~~kLk~kie~L--q~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~ee 161 (244)
..+..++.+++.+++.+ ++...+.-. ..+|..||..+...+.++-.-.... |..+|..++++...+.+.
T Consensus 146 ~~le~~l~~~k~~ie~vN~~RK~~Q~~~-------~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNRERKRRQEEA-------GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 72
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.78 E-value=97 Score=21.55 Aligned_cols=45 Identities=31% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 121 EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+|+.||..++.-+.....= ..+-..|+..+..+..|+..|..|.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L-----~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERL-----KSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred CHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766655432 23334455555555555555555543
No 73
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=46.36 E-value=38 Score=25.44 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQL 165 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L 165 (244)
...+|..|..|+..|+-+|+.|
T Consensus 74 a~~qi~~Ls~kv~eLq~ENRvl 95 (96)
T PF11365_consen 74 AREQINELSGKVMELQYENRVL 95 (96)
T ss_pred HHHHHHHHhhHHHHHhhccccc
Confidence 3468899999999999999854
No 74
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=46.31 E-value=2.3e+02 Score=25.79 Aligned_cols=53 Identities=32% Similarity=0.389 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HhhhhH-------------------------------HHHHHHHHHHHHHHHH
Q 037149 119 VKELQNLEKQLEGALALARQR------KTQIMI-------------------------------EQVEDLRKKERQLGDI 161 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~r------K~ql~~-------------------------------e~i~~Lkkke~~L~ee 161 (244)
......||.+|..++..|..= |..|+. -+++.|++|.+.|.+|
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeE 175 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEE 175 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHH
Confidence 466777888888887777643 333321 2358899999999999
Q ss_pred HHHHHHHHHh
Q 037149 162 NKQLRIKLET 171 (244)
Q Consensus 162 N~~L~~k~~~ 171 (244)
|..|+.+...
T Consensus 176 N~~LR~Ea~~ 185 (306)
T PF04849_consen 176 NEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHH
Confidence 9999997765
No 75
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.29 E-value=1.2e+02 Score=22.66 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 127 KQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 127 ~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
...+.+...+..++. .+...++.+.++...+..+=..|+.+|.+
T Consensus 59 ~~~~ea~~~Le~~~e-~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 59 QEKEEARTELKERLE-TIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 23455666777777777776777666655
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.64 E-value=2e+02 Score=24.92 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=5.8
Q ss_pred eeecccccch
Q 037149 55 YEFGSAGINK 64 (244)
Q Consensus 55 ~ef~s~sm~~ 64 (244)
.-||..++..
T Consensus 11 ~~~C~~C~~~ 20 (302)
T PF10186_consen 11 RFYCANCVNN 20 (302)
T ss_pred CeECHHHHHH
Confidence 3377766554
No 77
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.52 E-value=1.5e+02 Score=26.45 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 121 EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
-|.++|+.|+-++.++----.+| ++-+.|-.-++.|.+|-+.|+..+.
T Consensus 134 sleDfeqrLnqAIErnAfLESEL--dEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESEL--DEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777663221111 1112233345566677777777664
No 78
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=45.44 E-value=1.1e+02 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+..+-+.|+.+-+.|.-+|..|...+++
T Consensus 109 L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 109 LQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344455556666666666666665553
No 79
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=45.26 E-value=1.5e+02 Score=23.46 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 118 SVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 118 s~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
.+.|++.+-.-.|..+++..+.- ..-..+|..|+++...+...|+.|.++|
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~-~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAEL-RAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 46888888888888887765432 2235778999999999999999988764
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.13 E-value=3e+02 Score=27.17 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhh
Q 037149 88 WYQEATKLKAKYESLQRTQRHL 109 (244)
Q Consensus 88 l~~E~~kLk~kie~Lq~~~r~l 109 (244)
++.++.+..++.+.|...+..+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~L 162 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQL 162 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 81
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=44.23 E-value=1.7e+02 Score=28.41 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 113 DLGPLSVKELQNLEKQLEGALALAR---QRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR---~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
||+.||.+||+ .++|.+++.+= .-|.|| +++||.+...|+.--+.|+....+.
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~VnP~k~KeQL----V~QLkTQItDLErFInFlQ~e~~e~ 253 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQLVNPFKEKEQL----VDQLKTQITDLERFINFLQDEVGEN 253 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 68899998876 57888888873 345555 3567777777777777777766553
No 82
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=44.19 E-value=39 Score=26.39 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
.+++|..+...|+=||+.|+++|...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999764
No 83
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.14 E-value=1.4e+02 Score=24.62 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 119 VKELQNLEKQLEGALALARQR----------KTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~r----------K~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+.+|..++..++..-+...+. +..-..++++.|+++......+...|+++.+.
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555554322 33345566777776666666666666666654
No 84
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.03 E-value=1.9e+02 Score=30.74 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.3
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 037149 87 SWYQEATKLKAKYESLQR 104 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~ 104 (244)
.+..++.+|+.+++.|..
T Consensus 478 Q~~~et~el~~~iknlnk 495 (1195)
T KOG4643|consen 478 QLEAETEELLNQIKNLNK 495 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555444433
No 85
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=43.61 E-value=56 Score=24.58 Aligned_cols=32 Identities=41% Similarity=0.411 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 142 QIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 142 ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
|+..++..-|+++...+.++|+.|..+|..+.
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678889999999999999999999887754
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.37 E-value=64 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+..++..++++...++++|..|+.++..-
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888764
No 87
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.05 E-value=71 Score=28.90 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037149 114 LGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQL 165 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L 165 (244)
=.+||..|-..| ..||.||.||+ ++|..|+.......+|-..|
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 356777776555 46899998886 77999998887777765554
No 88
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.15 E-value=1.1e+02 Score=23.09 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+..-..+.. ...++.+++..|..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888875543322111212 234556666666666666666555555544
No 89
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.98 E-value=53 Score=27.19 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 037149 122 LQNLEKQLEGALALARQRKTQIMIEQV---EDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 122 L~~LE~~Le~sL~~IR~rK~ql~~e~i---~~Lkkke~~L~eeN~~L~~k~ 169 (244)
|.++|..|..++.+- -+|.++| +.|+...+.|.+|-+.|+.++
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788887777653 3455444 234444555555555555554
No 90
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=40.77 E-value=2.1e+02 Score=26.55 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred cccchhhhhhhhhcCCCCCC--Cchhh-hHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037149 60 AGINKTLERYQRCCFNPQDN--SIERE-TQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALA 136 (244)
Q Consensus 60 ~sm~~ileRY~~~~~~~~~~--~~~~e-~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~I 136 (244)
..++.+.+||......-.+. .++.+ ...+..|+..|..-+.. +++...++.+|+.+-.-+
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~-----------------~~~~~~~~~~l~~a~~~l 69 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEK-----------------YREYKKAQEDLEDAKEML 69 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 34778888998764322221 12111 11333344443333322 344444444444444433
Q ss_pred HHHHh----hhhHHHHHHHHHHHHHHHHHHHHH
Q 037149 137 RQRKT----QIMIEQVEDLRKKERQLGDINKQL 165 (244)
Q Consensus 137 R~rK~----ql~~e~i~~Lkkke~~L~eeN~~L 165 (244)
...+. .+..++|..++.+...|.++-+.|
T Consensus 70 ~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 70 AEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222 355677777777777777765554
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=39.86 E-value=2e+02 Score=23.11 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 132 ALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 132 sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
-|..+|+-|..| ...+...+.++..|.--|..+...|+..+
T Consensus 74 EL~~l~sEk~~L-~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 74 ELDTLRSEKENL-DKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555444 35566666677777777777766666543
No 92
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.82 E-value=2.1e+02 Score=26.39 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 037149 90 QEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQR 139 (244)
Q Consensus 90 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~r 139 (244)
.|...|.++.+.||...+.+.. .++|+..+...--+++++=|.|
T Consensus 4 eEW~eL~~efq~Lqethr~Y~q------Kleel~~lQ~~C~ssI~~Qkkr 47 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQ------KLEELSKLQDKCSSSISHQKKR 47 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677776666533 2555555555555555544443
No 93
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.69 E-value=3.4e+02 Score=26.78 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 114 LGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
.....+-+|+.--+.++.+|..|.+...+ +.+.+..|++-|...++.-..++.++.+...
T Consensus 372 ~~~~~yS~lq~~l~~~~~~l~~i~~~q~~-~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 372 AQEVAYSELQDNLEEIEKALTDIEDEQEK-VQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888765554 4688999999999999999999999987543
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.58 E-value=2.2e+02 Score=23.65 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037149 149 EDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 149 ~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
..+..|-..|++||..|-...-
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777755443
No 95
>PHA03162 hypothetical protein; Provisional
Probab=38.95 E-value=48 Score=26.32 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
.+++|.++...|+=||+.|+++|...
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788888899999999999999653
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.59 E-value=4.6e+02 Score=27.02 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
..++..+...|+..+...+.+|..++.+.-.+.++-.+...++-..+-+++
T Consensus 543 ~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665555544444444444443333333333
No 97
>PHA03155 hypothetical protein; Provisional
Probab=38.52 E-value=47 Score=25.70 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
.+++|.++...|+=||+.|++++...
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 36788888899999999999999663
No 98
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=38.47 E-value=1.9e+02 Score=22.56 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhcc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037149 86 QSWYQEATKLKAKYESLQRTQRHLLG----EDLGPLSVKELQNLEKQLEGALALARQRK 140 (244)
Q Consensus 86 q~l~~E~~kLk~kie~Lq~~~r~l~G----edL~~Ls~~EL~~LE~~Le~sL~~IR~rK 140 (244)
+.+..++.+|+-++..|.+..++-.| .+=..|+..+=+-+-...-++|...-++|
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999988888776 55667888888888888888887777665
No 99
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.34 E-value=92 Score=32.90 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 128 QLEGALALARQRKTQ-IMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 128 ~Le~sL~~IR~rK~q-l~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
.|+.-|.+.|.|-.. -+..+|-.|++|...++.++...+.|+++-
T Consensus 282 MLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 282 MLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 367777788777654 366788888899999999999999888873
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.32 E-value=3.5e+02 Score=27.73 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037149 155 ERQLGDINKQLRIKLET 171 (244)
Q Consensus 155 e~~L~eeN~~L~~k~~~ 171 (244)
.+.|.|+...|..++++
T Consensus 130 i~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 130 IKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777777766
No 101
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.18 E-value=1.5e+02 Score=28.69 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 142 QIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 142 ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++|..+..+++.|.+.|.++|..|+.+++.
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455667778888999999999999999854
No 102
>PHA03155 hypothetical protein; Provisional
Probab=38.06 E-value=1.9e+02 Score=22.42 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=44.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037149 85 TQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRK 140 (244)
Q Consensus 85 ~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK 140 (244)
.+.+..|+.+|+-++..|.+..++-.+.+=..|+..+=+-+-..+-++|...-++|
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888999999999999988877654555567888888888888888887776665
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.89 E-value=33 Score=30.33 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=26.7
Q ss_pred ecccccchhhhhhhhhcCCCCCC--CchhhhHHhHHHHHHHHHHHHHHhhhhhhh
Q 037149 57 FGSAGINKTLERYQRCCFNPQDN--SIERETQSWYQEATKLKAKYESLQRTQRHL 109 (244)
Q Consensus 57 f~s~sm~~ileRY~~~~~~~~~~--~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l 109 (244)
-+++++++-+.+..+........ ......+.++.|+.+|+..+|.++..+..+
T Consensus 33 ~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 33 VGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred cCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555666666666554332211 111223356666666666666655544433
No 104
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.62 E-value=91 Score=23.66 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
+++++|+..+-...+..-...-..-..++.+++..+.++.+.|++.-+.|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887765544321111111123455555566666555555555555444
No 105
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.96 E-value=1.1e+02 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 140 KTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 140 K~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
|.|--.|.|.-||-....|.+.|..|..++..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556799999999999999999999998654
No 106
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=36.87 E-value=1.3e+02 Score=26.81 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 119 VKELQNLEK-QLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 119 ~~EL~~LE~-~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
..|+..||. .+.+....-+.|| ..++.|+.|++|+..|.-.|..|...+.+.
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~--rkLdrisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRK--RKLDRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 345555554 4555555555554 346999999999999999999988777653
No 107
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.82 E-value=1.6e+02 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
...|+.|+++...+.+.-..++.++.+
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766666666654
No 108
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.08 E-value=2.4e+02 Score=22.98 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHHhhhhh--hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQR--HLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQI---------MIEQVEDLRKKE 155 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r--~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql---------~~e~i~~Lkkke 155 (244)
.++..+..++..+..++...+ .-+|++| .+-|-.+|.-.-..-..+|.+|-.+| -...+...+.|.
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L---~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl 86 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGL---HLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKL 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666655544 3357654 44444444444444445554443332 235566788888
Q ss_pred HHHHHHHHHHHHHHHhc
Q 037149 156 RQLGDINKQLRIKLETE 172 (244)
Q Consensus 156 ~~L~eeN~~L~~k~~~~ 172 (244)
..+..++..++..+...
T Consensus 87 ~~~~~~~~~l~~~l~~~ 103 (177)
T PF13870_consen 87 HFLSEELERLKQELKDR 103 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888764
No 109
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.51 E-value=1.7e+02 Score=21.05 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhcc
Q 037149 86 QSWYQEATKLKAKYESLQRTQRHLLG 111 (244)
Q Consensus 86 q~l~~E~~kLk~kie~Lq~~~r~l~G 111 (244)
+.+......|+.++...+...+.+-|
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666777788888877776666655
No 110
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.30 E-value=2.7e+02 Score=23.35 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=32.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHHhhhhhhhccC--CC-CCCCHHHHHHHHHHHHHHHHH
Q 037149 82 ERETQSWYQEATKLKAKYESLQRTQRHLLGE--DL-GPLSVKELQNLEKQLEGALAL 135 (244)
Q Consensus 82 ~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge--dL-~~Ls~~EL~~LE~~Le~sL~~ 135 (244)
+.+.+.+..++.+|.+++..|+.+.+.+-.| .| ..|+++|++.--+.|+.-.+.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~ 134 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAG 134 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3445577778888888888888877765332 11 235566665554444443333
No 111
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.14 E-value=1.8e+02 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037149 146 EQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
.++..++++.+.+.++.+.|++
T Consensus 94 ~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 94 QEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 112
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.09 E-value=5e+02 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=13.7
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhh
Q 037149 83 RETQSWYQEATKLKAKYESLQRTQR 107 (244)
Q Consensus 83 ~e~q~l~~E~~kLk~kie~Lq~~~r 107 (244)
..++.+..+...++.++-.++...+
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~ 685 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRR 685 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666665555554433
No 113
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=35.01 E-value=67 Score=26.78 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=35.6
Q ss_pred cceeeeee--ecCCCceeeccc----------ccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhh
Q 037149 41 AEVALIIF--SSRGKLYEFGSA----------GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRH 108 (244)
Q Consensus 41 aeValIvf--S~~gkl~ef~s~----------sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~ 108 (244)
+|.+||+. ||+||=|-+-.. +...++.||...... ......-..++..|+.++..+.+..+.
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~------a~~~~~~~~~~r~lr~~it~~rR~i~~ 169 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAAL------AEAARAERRALRRLRRRITLLRRDIRK 169 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889998 799998865431 255666777554321 111123334455566666665555544
Q ss_pred h
Q 037149 109 L 109 (244)
Q Consensus 109 l 109 (244)
+
T Consensus 170 l 170 (177)
T PF03428_consen 170 L 170 (177)
T ss_pred H
Confidence 3
No 114
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.95 E-value=4.6e+02 Score=26.74 Aligned_cols=97 Identities=27% Similarity=0.360 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHH----------HHHHHHHHH
Q 037149 68 RYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQ----------LEGALALAR 137 (244)
Q Consensus 68 RY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~----------Le~sL~~IR 137 (244)
|.+-......+.....+.+.++.+...|+.++..|.+.... .-.-|..||+. ||.-|..-|
T Consensus 445 Rsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~---------DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 445 RSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ---------DKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcc
Q 037149 138 QRKTQIMIEQVED--------------LRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 138 ~rK~ql~~e~i~~--------------Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
.+|.+--..--.. |+.+.+.|+.|-+.|+..+...+
T Consensus 516 k~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 516 KARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 115
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.72 E-value=2.4e+02 Score=30.62 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=62.1
Q ss_pred hhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc--cccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHH
Q 037149 21 FSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS--AGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAK 98 (244)
Q Consensus 21 FsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s--~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~k 98 (244)
..+|..-|+.+|.||- .+|-+--|.| .+|++.|+.-+..-.+.. .+..++..+...+..|+++
T Consensus 1176 L~~rt~rl~~~A~~l~-------------~tGv~gay~s~f~~me~kl~~ir~il~~~s--vs~~~i~~l~~~~~~lr~~ 1240 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELK-------------QTGVLGAYASRFLDMEEKLEEIRAILSAPS--VSAEDIAQLASATESLRRQ 1240 (1758)
T ss_pred HHHHHHHHHHHHHHhh-------------hccCchhhHhHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHH
Confidence 3467778899999985 2344445666 678888887777643222 2333344555555555555
Q ss_pred HHHHhhhhhhhccCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149 99 YESLQRTQRHLLGEDL------GPLSVKELQNLEKQLEGALALARQRKTQI 143 (244)
Q Consensus 99 ie~Lq~~~r~l~GedL------~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql 143 (244)
+..+...+-. ..++| .+++-+||..|+...+.-+.-.++-+.++
T Consensus 1241 l~~~~e~L~~-~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1241 LQALTEDLPQ-EEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred HHHHHhhhhh-hhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444322221 12222 34566888888888777666666655443
No 116
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.60 E-value=1.1e+02 Score=21.60 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
-+..++..++++...++++|..|+.++...
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988763
No 117
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=34.35 E-value=2.4e+02 Score=28.18 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCC-HHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 90 QEATKLKAKYESLQRTQRHLLGEDLGPLS-VKELQNLEKQLEGALA----LARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 90 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls-~~EL~~LE~~Le~sL~----~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
.|..+|+..++.+..+.-++-+.++.-.+ -+.|..++..++...+ -+-....+-..+....|+..+..+.+.|..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555544443333322222 2345555655555555 444444455566667777777777888887
Q ss_pred HHHHHHhcc
Q 037149 165 LRIKLETEG 173 (244)
Q Consensus 165 L~~k~~~~~ 173 (244)
|.+++....
T Consensus 201 le~ki~~lq 209 (629)
T KOG0963|consen 201 LEKKISSLQ 209 (629)
T ss_pred HHHHHHHHH
Confidence 777776653
No 118
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=34.27 E-value=22 Score=33.42 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=47.9
Q ss_pred eeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc-cccchhhhhhhhh
Q 037149 8 LKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGINKTLERYQRC 72 (244)
Q Consensus 8 ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s-~sm~~ileRY~~~ 72 (244)
|+++-++..-..||.+|+.| ||+++||+.+-+.||...--...|++ .-+.+.-.-|++.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhhh
Confidence 78888888889999999999 99999999999999987777777777 4455665555554
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.98 E-value=3.3e+02 Score=23.92 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 117 LSVKELQNLEKQLEGALALARQRKTQI--MIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql--~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
-+.+++..|...++.+-.++++--.++ +++.+..|+++...+.+.-..+...+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888777777776544333 33444444444444444444444433
No 120
>smart00338 BRLZ basic region leucin zipper.
Probab=33.85 E-value=1.2e+02 Score=20.48 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
|..+...|+.+...|..++..|+..+
T Consensus 38 L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 38 LEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777778887777654
No 121
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.22 E-value=3.8e+02 Score=24.47 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 148 VEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+...-..++.+.++|..|+.+|.-
T Consensus 256 ~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 256 MAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556789999999999999964
No 122
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=32.91 E-value=1.7e+02 Score=21.83 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+. ..-..++..++..|.++...|+..-..|..++
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887655442 33344556666666666666666555555544
No 123
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.88 E-value=1.1e+02 Score=27.12 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 122 LQNLEKQLEGALALARQRKTQIMI--------------------EQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 122 L~~LE~~Le~sL~~IR~rK~ql~~--------------------e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
--+-+.+|+.-|.+.++.|.++-. -.++++..+.....|-|..|...|.|.+
T Consensus 89 ~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke 160 (333)
T KOG1853|consen 89 FYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE 160 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334555666666666666655421 1233444555666778888888887754
No 124
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=32.72 E-value=1.6e+02 Score=22.89 Aligned_cols=53 Identities=6% Similarity=0.238 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+..-... .....++.+++..+..+...|+..-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999888765433221111 11124566667777777666665555555444
No 125
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=32.58 E-value=11 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=28.2
Q ss_pred ccchhhhhhcchh---------hHHHHHhhcccccceeeeeeecCCC
Q 037149 16 NRQVTFSKRRNGL---------LKKAYELSVLCDAEVALIIFSSRGK 53 (244)
Q Consensus 16 ~RqvTFsKRr~GL---------~KKA~ELSvLCdaeValIvfS~~gk 53 (244)
.+...||+=|+-| +-|..|+.+=||.|.-+|+..+.|.
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3444557666645 4457899999999999999998553
No 126
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=31.92 E-value=15 Score=35.78 Aligned_cols=92 Identities=24% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHhhcccccceeeeeee--cCCCceeecccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhh
Q 037149 32 AYELSVLCDAEVALIIFS--SRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHL 109 (244)
Q Consensus 32 A~ELSvLCdaeValIvfS--~~gkl~ef~s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l 109 (244)
+.|+.-||+ -|=.+|-| |=||+.+|....|+ .+..|.++|..|+......+.. .++ .
T Consensus 434 ~~ei~~lr~-~iQ~l~~s~~PLgk~~d~iqEDid----------------~M~~El~~W~~e~~~~~~~l~~---e~~-~ 492 (539)
T PF10243_consen 434 EKEIEKLRE-SIQTLCRSANPLGKLMDYIQEDID----------------SMQKELEMWRSEYRQHAEALQE---EQS-I 492 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHhcchHHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHHHHHHHH---HHh-h
Confidence 345666663 23334443 45777766543332 3345556888888776654443 222 2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037149 110 LGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMI 145 (244)
Q Consensus 110 ~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~ 145 (244)
..+.|..| ..+|.+||+++......|..-|.++|.
T Consensus 493 t~~~~~pl-~~~L~ele~~I~~~~~~i~~~ka~Il~ 527 (539)
T PF10243_consen 493 TDEALEPL-KAQLAELEQQIKDQQDKICAVKANILK 527 (539)
T ss_dssp ------------------------------------
T ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444 367899999999999999888887765
No 127
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.83 E-value=1.8e+02 Score=20.42 Aligned_cols=47 Identities=28% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 124 NLEKQLEGALALAR---QRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 124 ~LE~~Le~sL~~IR---~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
.||.+|.++|..+- .++-+-..+....|+..-..-..+|..|+.++.
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~ 52 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVN 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 57777777776664 344445566666666654444445555544443
No 128
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=31.57 E-value=32 Score=26.44 Aligned_cols=27 Identities=33% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHHhhcccccceeeeeeecCCCceeecc
Q 037149 32 AYELSVLCDAEVALIIFSSRGKLYEFGS 59 (244)
Q Consensus 32 A~ELSvLCdaeValIvfS~~gkl~ef~s 59 (244)
-.+|-.|-+|- |...||++|++.+|-.
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeec
Confidence 35677777774 5588999999998755
No 129
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=31.43 E-value=2.3e+02 Score=28.70 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 121 ELQNLEKQLEGALALARQRKTQI---MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 121 EL~~LE~~Le~sL~~IR~rK~ql---~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+|..|+++-+.-+...+.++.++ ..++++.||.-.+.|++|++.|.-++..
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555443 3578888999999999999998776654
No 130
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.42 E-value=5.2e+02 Score=26.98 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLL--GEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~--GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
.+..++.||=+.++.+-...-.-- -+....++.+++.++-......-.-||+ +--+++.|+.+++.|.-+|..
T Consensus 615 ~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~-----lD~~~e~lkQ~~~~l~~e~ee 689 (970)
T KOG0946|consen 615 ALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRE-----LDYQIENLKQMEKELQVENEE 689 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHH
Confidence 566777777766665433322111 1234557777777777766665555554 346778899999999999999
Q ss_pred HHHHHHhc
Q 037149 165 LRIKLETE 172 (244)
Q Consensus 165 L~~k~~~~ 172 (244)
|..++...
T Consensus 690 L~~~vq~~ 697 (970)
T KOG0946|consen 690 LEEEVQDF 697 (970)
T ss_pred HHHHHHHH
Confidence 88888764
No 131
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=31.38 E-value=1.1e+02 Score=24.33 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++++..+-..+...-.........++.+++..+..+...|++.-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999888776543211111112223556666777777666666666665544
No 132
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=30.40 E-value=2.9e+02 Score=22.25 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 121 EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
|.+.|+..-...+.+|+.++.+| .++...+.=-+.|.+-|+.+..
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 67788888888888998877654 2222222223456666666544
No 133
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.81 E-value=30 Score=29.87 Aligned_cols=19 Identities=32% Similarity=0.711 Sum_probs=15.8
Q ss_pred cceeeeeeecCCCcee--ecc
Q 037149 41 AEVALIIFSSRGKLYE--FGS 59 (244)
Q Consensus 41 aeValIvfS~~gkl~e--f~s 59 (244)
-|-||-||||+|.|+. |+-
T Consensus 4 ydraltvFSPDGhL~QVEYAq 24 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQ 24 (249)
T ss_pred cccceEEECCCCCEEeeHhHH
Confidence 5778999999999986 654
No 134
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=29.81 E-value=3.5e+02 Score=22.97 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=57.6
Q ss_pred ccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhh-hhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 037149 61 GINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQ-RHLLGEDLGPLSVKELQNLEKQLEGALALARQR 139 (244)
Q Consensus 61 sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~-r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~r 139 (244)
+..+++|.|...+.... .+ ..+.+.+..++.-.+.. ..+ ++|...+|.+.. .|...--.
T Consensus 7 ~~~~~~D~Y~~~~~~~~----Eh------~~f~~Ak~rLe~~hr~r~~~V---------mkeW~eaE~~~~-~l~~~DPk 66 (193)
T PF12925_consen 7 PTSDAVDPYFEHPDPEN----EH------QRFKEAKERLEEKHRERMTKV---------MKEWSEAEERYK-ELPKADPK 66 (193)
T ss_dssp ----HHHHHHHSSTTST----HH------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHTTT-TSHHHHHH
T ss_pred CCCCCCChHhhcCCCCc----hH------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-hchhhhhh
Confidence 35577899998765431 12 22333344443332221 122 678888888877 55666667
Q ss_pred HhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 140 KTQIMIEQV-EDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 140 K~ql~~e~i-~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+.+.+...| ...|++...|++|+..-+++|.+.
T Consensus 67 ~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~ 100 (193)
T PF12925_consen 67 KAEQFKKEMTQRFQKTVQALEQEAAAERQQLVET 100 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766555 459999999999999999999874
No 135
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=29.36 E-value=43 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=23.1
Q ss_pred ceeeeeeecCC--Cceeecc-cccchhhhhhhh
Q 037149 42 EVALIIFSSRG--KLYEFGS-AGINKTLERYQR 71 (244)
Q Consensus 42 eValIvfS~~g--kl~ef~s-~sm~~ileRY~~ 71 (244)
.+-|+|++++| |++.+.. .....++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 46788999887 6777666 568889988864
No 136
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.36 E-value=5.8e+02 Score=25.42 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=11.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhhh
Q 037149 87 SWYQEATKLKAKYESLQRTQRH 108 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~ 108 (244)
.+..++.++..+++.+.+..+.
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555554443
No 137
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=29.06 E-value=2.5e+02 Score=26.81 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 037149 120 KELQNLEKQLEGALALARQRKTQIM 144 (244)
Q Consensus 120 ~EL~~LE~~Le~sL~~IR~rK~ql~ 144 (244)
++|..=+..|+..|...+.+|.++.
T Consensus 200 k~le~~~~~l~~~l~e~~~~~~~~~ 224 (447)
T KOG2751|consen 200 EELEKEEAELDHQLKELEFKAERLN 224 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666555443
No 138
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=29.04 E-value=1.4e+02 Score=21.76 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 142 QIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 142 ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
..+..+++.+++....|.++|..|+-++...
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455779999999999999999999888664
No 139
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=28.99 E-value=35 Score=25.71 Aligned_cols=29 Identities=34% Similarity=0.349 Sum_probs=21.4
Q ss_pred HHHHHhhcccccceeeeeeecCCCceeecc
Q 037149 30 KKAYELSVLCDAEVALIIFSSRGKLYEFGS 59 (244)
Q Consensus 30 KKA~ELSvLCdaeValIvfS~~gkl~ef~s 59 (244)
.|-.||--+-+| +|.=.|||+|||.+|-+
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykg 31 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKG 31 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeC
Confidence 355666666666 44467999999999877
No 140
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=28.92 E-value=4.6e+02 Score=24.06 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~ 166 (244)
.+..++.--++++..|.+.+|+-+-| ++-|.+--..||.++-.--.. -.-+-+.|++...|.||-+.|.
T Consensus 11 EL~kQiEIcqEENkiLdK~hRQKV~E------VEKLsqTi~ELEEaiLagGaa-----aNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 11 ELMKQIEICQEENKILDKMHRQKVLE------VEKLSQTIRELEEAILAGGAA-----ANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555667777788888865442 666666666666655443332 2345667788888888888887
Q ss_pred HHHHh
Q 037149 167 IKLET 171 (244)
Q Consensus 167 ~k~~~ 171 (244)
+.|..
T Consensus 80 RELAR 84 (351)
T PF07058_consen 80 RELAR 84 (351)
T ss_pred HHHHH
Confidence 77653
No 141
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=28.73 E-value=9.2 Score=27.44 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=27.1
Q ss_pred cchhhhhhcchhhH---------HHHHhhcccccceeeeeeecCCC
Q 037149 17 RQVTFSKRRNGLLK---------KAYELSVLCDAEVALIIFSSRGK 53 (244)
Q Consensus 17 RqvTFsKRr~GL~K---------KA~ELSvLCdaeValIvfS~~gk 53 (244)
+-+-||+-|++|-. ++.|+.+-||.|.-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 44456777877744 46789999999999999988886
No 142
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=28.36 E-value=1.2e+02 Score=27.19 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=26.3
Q ss_pred hhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037149 103 QRTQRHLLGEDLGPLSVKELQNLEKQLEGALALA 136 (244)
Q Consensus 103 q~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~I 136 (244)
++...++--|.|.+|+++||.+|-..|-..+..|
T Consensus 205 ~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~v 238 (285)
T PF06937_consen 205 QRRHPHYSREELNSMTLDELKQLNEKLLQQIQDV 238 (285)
T ss_pred cccccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 4445566778899999999999988876665555
No 143
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.32 E-value=6.3e+02 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 117 LSVKELQNLEKQLEGALALAR-------QRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR-------~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
.++++|+.--..++..+..++ ..+.+ +.++|..|+.++..+......|...+.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~-~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQD-QQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466766665555555555553 22222 346666666666666666555555443
No 144
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=28.24 E-value=1.9e+02 Score=22.72 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
++|++|+.++-...+..-... ....+++.+++..+..+...|+..-..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888765443211111 111244566777777777777766666665443
No 145
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.19 E-value=2e+02 Score=21.84 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+.+-... ....+++.+++..+.++...|...-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888765543321011 11234455666666666665555555554433
No 146
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.11 E-value=3.5e+02 Score=25.13 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 129 LEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 129 Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
||..+.+.++++.+ +.-+++.+++.-++-.|++..|.+++.|
T Consensus 132 LE~li~~~~EEn~~-lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 132 LEGLIRHLREENQC-LQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33444444444322 2334455555444555555555555544
No 147
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=28.10 E-value=2.7e+02 Score=21.19 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 116 PLSVKELQNLEKQLEGAL---ALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL---~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++++++..+-...+..- ..++ ...+++.+++..|..+...|++.-..|..++..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLE-KMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777665443321 1111 122456677777777777776666666665543
No 148
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=28.03 E-value=34 Score=27.36 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.5
Q ss_pred hhcccccceeeeeeecCCCceeec
Q 037149 35 LSVLCDAEVALIIFSSRGKLYEFG 58 (244)
Q Consensus 35 LSvLCdaeValIvfS~~gkl~ef~ 58 (244)
+.++|||||-++|-+.+.+-.-||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 578999999999999887755554
No 149
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=27.79 E-value=2.1e+02 Score=21.97 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+..-..... -..++.+++..+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRASAD-VKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888865543321111111 124566666777766666665555555444
No 150
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.68 E-value=1.7e+02 Score=20.31 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+.+.|+.|=..-..|.++|..|+.++..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888888888887754
No 151
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=27.66 E-value=98 Score=29.76 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 037149 150 DLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 150 ~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+|++|+..|..+|.-|-.+|..
T Consensus 290 eL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 290 ELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HHHHHHHHHhhccHHHHHHHHH
Confidence 4556666666666666555554
No 152
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=27.26 E-value=16 Score=27.75 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=34.4
Q ss_pred ccceeee-cCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 5 RVELKRI-ENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 5 Ki~ik~I-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
+|++|.+ +|.+|=.|+|.||..|+-+ .| ...+|..=-|+-.-.+++++.|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq----------fE-----i~n~G~~RI~gYk~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ----------FE-----IRNKGEFRIFGYKMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE----------EE-----EETTSEEEEEEES--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE----------EE-----EecCCcEEEEEEcCCHHHHHHHHhc
Confidence 5778777 7888999999999999621 12 2477776666665566666666543
No 153
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=27.15 E-value=4.4e+02 Score=29.21 Aligned_cols=122 Identities=15% Similarity=0.247 Sum_probs=0.0
Q ss_pred eeeeecCCCceeecccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHH----------------------HHHH
Q 037149 45 LIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAK----------------------YESL 102 (244)
Q Consensus 45 lIvfS~~gkl~ef~s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~k----------------------ie~L 102 (244)
+++|.++|++..| .++.+||+.|-.+-..--..........+..++.+|..+ ++.|
T Consensus 963 m~~~d~~g~i~~~--~~~~~Il~~f~~~Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~~L 1040 (1388)
T PTZ00108 963 MVLFDENGKIKKY--SDALDILKEFYLVRLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKEL 1040 (1388)
T ss_pred EEEEeCCCCccee--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHHHH
Q ss_pred hhh--------------------------------------------hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037149 103 QRT--------------------------------------------QRHLLGEDLGPLSVKELQNLEKQLEGALALARQ 138 (244)
Q Consensus 103 q~~--------------------------------------------~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~ 138 (244)
... -..|++-.|.+|+.+....|.++++.....+..
T Consensus 1041 ~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~ 1120 (1388)
T PTZ00108 1041 KKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEK 1120 (1388)
T ss_pred HHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 139 RKTQ----IMIEQVEDLRKKERQLGDINKQLRIK 168 (244)
Q Consensus 139 rK~q----l~~e~i~~Lkkke~~L~eeN~~L~~k 168 (244)
-+.. +..+.++.+.++-....++-.....+
T Consensus 1121 L~~~t~~~lw~~DL~~~~~~~~~~~~~~~~~~~~ 1154 (1388)
T PTZ00108 1121 LKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAK 1154 (1388)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=34 Score=29.53 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=14.1
Q ss_pred ccceeeeeeecCCCcee
Q 037149 40 DAEVALIIFSSRGKLYE 56 (244)
Q Consensus 40 daeValIvfS~~gkl~e 56 (244)
+-|--+.||||.|+||.
T Consensus 8 gfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 8 GFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CccceEEEECCCceEEe
Confidence 44667899999999986
No 155
>PHA01750 hypothetical protein
Probab=27.12 E-value=2.2e+02 Score=19.88 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 037149 144 MIEQVEDLRKK 154 (244)
Q Consensus 144 ~~e~i~~Lkkk 154 (244)
+.+++.++++|
T Consensus 61 l~~qv~eik~k 71 (75)
T PHA01750 61 LSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 156
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.60 E-value=3.4e+02 Score=23.80 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.8
Q ss_pred cCCCCCCCH
Q 037149 111 GEDLGPLSV 119 (244)
Q Consensus 111 GedL~~Ls~ 119 (244)
|.|+..+++
T Consensus 97 GHDvEhiD~ 105 (290)
T COG4026 97 GHDVEHIDV 105 (290)
T ss_pred CCCccccCH
Confidence 555555554
No 157
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.55 E-value=5.6e+02 Score=24.30 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=39.1
Q ss_pred cchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhccCC------CCCCCHHHHHHHHHHHHHH
Q 037149 62 INKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGED------LGPLSVKELQNLEKQLEGA 132 (244)
Q Consensus 62 m~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ged------L~~Ls~~EL~~LE~~Le~s 132 (244)
+..+++.|..............-.+++..++.+++.+++..+...+.+.-++ -.+.....|.+++.++..+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 216 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAA 216 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHH
Confidence 5556667877654332211112234888889999988888776665443221 1122345555555554433
No 158
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.53 E-value=2.3e+02 Score=21.88 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+..-... ..-.+++..++..+..+...|++.-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888654322211111 11234566777777777777777666665544
No 159
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.51 E-value=2e+02 Score=21.58 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGAL---ALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL---~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
++|++|+..+-...+..- .... ...+++.+++..+..+...|...-..|..
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPCP-DLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888887765543321 1111 11245555666666665555555554443
No 160
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=26.46 E-value=4.6e+02 Score=25.91 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 037149 87 SWYQEATKLKAKYESLQR 104 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~ 104 (244)
.+..++.+|+.+++.+..
T Consensus 110 ~~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 344455555555554443
No 161
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=26.21 E-value=7.3e+02 Score=25.49 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=54.4
Q ss_pred eeeeeecCCCceeecccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhh----------------
Q 037149 44 ALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQR---------------- 107 (244)
Q Consensus 44 alIvfS~~gkl~ef~s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r---------------- 107 (244)
-+++|+.+|++. + -++.++|..|-.+-..- .. .....++.+++++++.|+--..
T Consensus 337 n~~~~d~~~~p~-~--~~l~~il~~f~~~R~~~----~~---rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~ 406 (742)
T PRK05561 337 NMNAIGLDGRPR-V--KGLKEILSEWLDHRREV----VT---RRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESD 406 (742)
T ss_pred eEEEEccCCEEE-E--CCHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCc
Confidence 667888888874 3 47888888886653210 00 1222334444444433321111
Q ss_pred ----hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 037149 108 ----HLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDI 161 (244)
Q Consensus 108 ----~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~ee 161 (244)
.++. .+ +++ | .|.+.-|+..|.++..-...-+.+++.+|+++...|+.-
T Consensus 407 ~ak~~l~~-~f-~~~--~-~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 407 EPKANLMA-RF-DLS--E-IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred cHHHHHHH-Hh-CCC--H-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 01 122 1 356666777777777666666667777777666555444
No 162
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.17 E-value=4.1e+02 Score=22.57 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=10.7
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 037149 87 SWYQEATKLKAKYESLQR 104 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~ 104 (244)
.+..++..|+..+..++.
T Consensus 40 ~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666665554
No 163
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=26.16 E-value=87 Score=20.05 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 139 RKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 139 rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+.+..+.-.|.+|.++.-.|..||..|+.++.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34455667788888888999999999988763
No 164
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=25.84 E-value=2e+02 Score=22.73 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGAL-ALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL-~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-......- ... .....++.+++..+.++...|.+....|...+
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTC-QEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887654321100 011 11234566677777777666666555554433
No 165
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.67 E-value=1.7e+02 Score=22.37 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
..+++..|+++...|..||..|++-+.-
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999886643
No 166
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=25.64 E-value=2.8e+02 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 146 EQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+....|+.....+.+.|.....-+..
T Consensus 88 ~~~~~l~~~~~~~~~~n~~N~~ll~~ 113 (143)
T PF05130_consen 88 ALWRELRELLEELQELNERNQQLLEQ 113 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444443
No 167
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.63 E-value=31 Score=25.07 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.0
Q ss_pred HHhhcccccceeeeeeecCCCcee
Q 037149 33 YELSVLCDAEVALIIFSSRGKLYE 56 (244)
Q Consensus 33 ~ELSvLCdaeValIvfS~~gkl~e 56 (244)
.-++|-||.+=++|-+|.+|.+|-
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G 40 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYG 40 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEE
Confidence 346899999999999999999885
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.19 E-value=6.8e+02 Score=26.62 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=19.0
Q ss_pred cchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhh
Q 037149 62 INKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQR 104 (244)
Q Consensus 62 m~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~ 104 (244)
+++.+=|.+..+..+ .++.|.+..|+.+++.+++.|.+
T Consensus 380 LKdalVrLRDlsA~e-----k~d~qK~~kelE~k~sE~~eL~r 417 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASE-----KQDHQKLQKELEKKNSELEELRR 417 (1243)
T ss_pred HHHHHHHHHhcchHH-----HHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555665544322 22334555555555555555543
No 169
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=25.16 E-value=1.1e+02 Score=20.05 Aligned_cols=18 Identities=39% Similarity=0.303 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 037149 114 LGPLSVKELQNLEKQLEG 131 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~ 131 (244)
|..+|++||++.-..||.
T Consensus 5 Lk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGS-HHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCH
Confidence 567889998876555554
No 170
>PHA03162 hypothetical protein; Provisional
Probab=25.14 E-value=3.5e+02 Score=21.51 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=43.5
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhccCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 85 TQSWYQEATKLKAKYESLQRTQRHLLGED----LGPLSVKELQNLEKQLEGALALARQRKT 141 (244)
Q Consensus 85 ~q~l~~E~~kLk~kie~Lq~~~r~l~Ged----L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ 141 (244)
.+.+..|+.+|+-++..|.+..++-.|.+ =..|+..+=+-+-...-++|...-++|.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI 75 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999998887655554 2348888888887777777777766653
No 171
>PLN03128 DNA topoisomerase 2; Provisional
Probab=24.98 E-value=4.2e+02 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=20.2
Q ss_pred eeeeeecCCCceeecccccchhhhhhhhh
Q 037149 44 ALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 44 alIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
-+++|.+.|++..| .++.+||+.|-.+
T Consensus 961 nm~l~d~~~~i~ky--~~~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKY--DSPEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCC--CCHHHHHHHHHHH
Confidence 56788888988777 4577888887654
No 172
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=24.93 E-value=71 Score=18.78 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=13.9
Q ss_pred ceeeeeeecCCCceeecc
Q 037149 42 EVALIIFSSRGKLYEFGS 59 (244)
Q Consensus 42 eValIvfS~~gkl~ef~s 59 (244)
.-.-..|||+||-..|+|
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 445578999999998988
No 173
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=24.88 E-value=1.4e+02 Score=28.13 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=33.5
Q ss_pred ccccceeeecCCcccchhh---hhh-------cchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 3 RGRVELKRIENKINRQVTF---SKR-------RNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 3 R~Ki~ik~Ien~~~RqvTF---sKR-------r~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
.++|+|.-|.|.+.+.|.| -|| ..+|+|+ .-|.+- .-+-.+|....| ..| .++.+||+.|-.+
T Consensus 243 ~~~i~I~d~~D~Sd~~v~ivI~lk~~~~~~~~~~~L~k~-t~Lq~s--~~~n~~~l~~~~--p~~--~~~~eIL~~f~~~ 315 (426)
T PF00521_consen 243 DKKIKISDYRDESDRGVRIVIELKRGADPEKILEGLYKK-TKLQSS--ISTNNMVLFDNG--PKY--DSLKEILKEFYEF 315 (426)
T ss_dssp TTSSTEEEEEE-BBTBS-EEEEESTTSHHHHHHHHHHHH-STTEEE--EEEETEEEETTE--EEE--SSHHHHHHHHHHH
T ss_pred cCcchhhHHHhcCCCceeEEEEecCCccHHHHHHHHHHH-hhhhcc--ccchheEEecCc--cee--CCHHHHHHHHHHH
Confidence 3566677777777777766 233 3456665 223221 222333333335 334 4788888888654
No 174
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=24.87 E-value=3.4e+02 Score=25.99 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037149 90 QEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALA 136 (244)
Q Consensus 90 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~I 136 (244)
..+..|..+|+.|+..... -+.| + .+|+..||..++...+.|
T Consensus 80 ~pi~ele~ki~el~~~~~~-~~~~---~-~~ei~~l~~~~~~~~~~i 121 (431)
T PLN03230 80 KPIVDLENRIDEVRELANK-TGVD---F-SAQIAELEERYDQVRREL 121 (431)
T ss_pred hHHHHHHHHHHHHHhhhhc-cccc---H-HHHHHHHHHHHHHHHHHH
Confidence 3467778888877653221 1212 1 256776766665555544
No 175
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.85 E-value=2.5e+02 Score=21.58 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
++|++|+..+-...+..-... ..-..++.+++..+..+...|++....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMVA 110 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888755433211011 112345667777777777777777777666553
No 176
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.84 E-value=3.2e+02 Score=20.90 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-...+. ..... -..++.+++..++.+...|......|...+
T Consensus 56 G~sl~eI~~~l~~~~~--~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THCRE-MYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred CCCHHHHHHHHhcccC--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888886654332 11111 123556666777776666666655555444
No 177
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.82 E-value=6.3e+02 Score=24.33 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 037149 115 GPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDI 161 (244)
Q Consensus 115 ~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~ee 161 (244)
+..++.++.++-..+...+..++.+...+ ..++.+++++...|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQNE 167 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 35678888888888888887777665433 34444444444444443
No 178
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=24.72 E-value=2.5e+02 Score=21.56 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
++|++|+..+-...+..-... .....++..++..+..+...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 57 GFSLEECKELLNLWNDPNRTS-ADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888755332211111 111234556667777777777666666655543
No 179
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.63 E-value=4.8e+02 Score=22.87 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=6.4
Q ss_pred cccceeeeeee
Q 037149 39 CDAEVALIIFS 49 (244)
Q Consensus 39 CdaeValIvfS 49 (244)
-+||+-+|--.
T Consensus 56 eGADlvlIATD 66 (290)
T COG4026 56 EGADLVLIATD 66 (290)
T ss_pred ccCCEEEEeec
Confidence 46666666543
No 180
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=24.61 E-value=38 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=19.3
Q ss_pred hcccccceeeeeeecCCCcee--ecc
Q 037149 36 SVLCDAEVALIIFSSRGKLYE--FGS 59 (244)
Q Consensus 36 SvLCdaeValIvfS~~gkl~e--f~s 59 (244)
||=.+-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 345678899999999999987 654
No 181
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=24.38 E-value=66 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=18.2
Q ss_pred cccccceeeeeeecCCCcee-ecc
Q 037149 37 VLCDAEVALIIFSSRGKLYE-FGS 59 (244)
Q Consensus 37 vLCdaeValIvfS~~gkl~e-f~s 59 (244)
.-|++.|-+++||++-+.|- |..
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP 132 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIP 132 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEEEEcCCCceEEEEcC
Confidence 56999999999999988765 665
No 182
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=24.37 E-value=5.4e+02 Score=23.40 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=49.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~ 166 (244)
.++.|++.|+-+++.+......-- .--++|..-+-...+.--+.|+- ....+...|.........|..+|..|.
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE-----~ky~ediei~Kekn~~Lqk~lKL-neE~ltkTi~qy~~QLn~L~aENt~L~ 76 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKE-----KKYLEDIEILKEKNDDLQKSLKL-NEETLTKTIFQYNGQLNVLKAENTMLN 76 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 456777778777776654322100 00145555555555555544433 334566778888888889999999999
Q ss_pred HHHHh
Q 037149 167 IKLET 171 (244)
Q Consensus 167 ~k~~~ 171 (244)
.+++.
T Consensus 77 SkLe~ 81 (305)
T PF14915_consen 77 SKLEK 81 (305)
T ss_pred HHHHH
Confidence 99954
No 183
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=24.06 E-value=2e+02 Score=23.27 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
++|++|+..+-...+..-...-.....++.+++..+.++...|+..-..|..
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~ 118 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDG 118 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887665422211000112234455555565555555555444444
No 184
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=24.01 E-value=35 Score=30.44 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=24.1
Q ss_pred hhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccc
Q 037149 19 VTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61 (244)
Q Consensus 19 vTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~s 61 (244)
+||.+| +||+ +--+..++|+.+ .||.|.|+|+.
T Consensus 210 ~tl~~~-~GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~ 242 (281)
T PF12018_consen 210 WTLAER-DGLL-------LPGNPSIGVLKY--KDKYYAFSSRE 242 (281)
T ss_pred EEEecc-Ccee-------ecCCCccceeEE--cCEEEEeCCHH
Confidence 466666 4765 556678888877 78999999943
No 185
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.97 E-value=3.9e+02 Score=25.62 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 114 LGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+...++++|+.---+|++.|..-.+- -+..|=|+...|..+.+.|.+|+.
T Consensus 176 ~kq~~leQLRre~V~lentlEQEqEa-------lvN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 176 LKQNTLEQLRREAVQLENTLEQEQEA-------LVNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HhhhhHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666665545555554433221 123344555556666666666654
No 186
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.76 E-value=2.1e+02 Score=22.20 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEG-ALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~-sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-..... .-... ..-..++.+++..++++...|.+--..|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887654311 00001 11234566777777777777666555554443
No 187
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=23.68 E-value=3e+02 Score=27.02 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++.+|-++++|++.+.-|+.-|..-|
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655555444433
No 188
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.67 E-value=2.8e+02 Score=20.34 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLE 130 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le 130 (244)
+++++++..+-...+
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 578888888776553
No 189
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.64 E-value=2e+02 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+|++.|++|+-.|-+. +.-+..++++|+.|...| ||..|++-+.+
T Consensus 25 ~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~s~V~E 69 (420)
T PF07407_consen 25 ELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLRSHVCE 69 (420)
T ss_pred cccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhhhhhhh
No 190
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=23.62 E-value=4.4e+02 Score=22.03 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 120 ~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
.+...|+..++.-=+.|.+.+.+.+.+.++.|+.+-..+..+-..
T Consensus 112 ~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~ 156 (181)
T PF04645_consen 112 KEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREI 156 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444444443333
No 191
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.49 E-value=5.3e+02 Score=27.60 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLG-------PLSVKELQNLEKQLEGALALARQRKTQIM 144 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~-------~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~ 144 (244)
.++.|+.+||..+...+..+--++-++=- .-..+.++++|..|+..-+.|+.....++
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777766655443333322110 01235566777777777777776666554
No 192
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=23.43 E-value=1.8e+02 Score=25.75 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 149 EDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 149 ~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
.+++.|...|..||..|+.++++...
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999987543
No 193
>PRK09039 hypothetical protein; Validated
Probab=23.18 E-value=5.9e+02 Score=23.35 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 037149 122 LQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQL 158 (244)
Q Consensus 122 L~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L 158 (244)
|..|+..|+.+=.+.++.+ .+|..|+.+...+
T Consensus 153 la~le~~L~~ae~~~~~~~-----~~i~~L~~~L~~a 184 (343)
T PRK09039 153 LAALEAALDASEKRDRESQ-----AKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 6666666666655554443 4455555554443
No 194
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=22.79 E-value=1.8e+02 Score=18.19 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 037149 95 LKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAL 135 (244)
Q Consensus 95 Lk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~ 135 (244)
|..+|+.++...-.+.... +++-.+.-.+.+.||.-+..
T Consensus 2 L~~~Ie~~R~~L~~~~~~~--~l~~~~vl~~Sq~LD~lI~~ 40 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKK--GLTDPEVLELSQELDKLINE 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 3445555555544443333 67788888888888877654
No 195
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.79 E-value=2.6e+02 Score=21.37 Aligned_cols=51 Identities=12% Similarity=0.228 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+.++-..-+.. .. ..-.+++.+++..++++...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 57 GFTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788887765432211 01 11234556666666666666665555555444
No 196
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=22.78 E-value=28 Score=32.29 Aligned_cols=39 Identities=33% Similarity=0.411 Sum_probs=0.0
Q ss_pred cchhhHHHHHhhcccccceee-eeeecCCCceeecccccc
Q 037149 25 RNGLLKKAYELSVLCDAEVAL-IIFSSRGKLYEFGSAGIN 63 (244)
Q Consensus 25 r~GL~KKA~ELSvLCdaeVal-IvfS~~gkl~ef~s~sm~ 63 (244)
-.|+||=..=..-+|+|...| -|.+.+||+-+|+|+|+.
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ----------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 356777777789999999998 788999999999998876
No 197
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.74 E-value=2.7e+02 Score=19.37 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 037149 88 WYQEATKLKAKYESLQRTQ 106 (244)
Q Consensus 88 l~~E~~kLk~kie~Lq~~~ 106 (244)
+..++.-|+.+++.+.+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~ 21 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKN 21 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555666655554443
No 198
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=22.27 E-value=2.6e+02 Score=22.04 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEGAL-ALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL-~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|++|+..+-..+...- ..+.. ...++...+..+.++...|+.--..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKAD-WERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888755432211 11111 122344445555555555555555554444
No 199
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.24 E-value=3.8e+02 Score=21.67 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 037149 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINK 163 (244)
Q Consensus 120 ~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~ 163 (244)
.++..|+.+|..+=+.|..-|.. ..-+++|+++...|+..|.
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~--~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKS--AKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHH
Confidence 46666667776666666665543 2345667777777777777
No 200
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.18 E-value=8.2e+02 Score=24.68 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHH-HHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQ-RKTQIMIEQVED-LRKKERQLGDINKQ 164 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~-rK~ql~~e~i~~-Lkkke~~L~eeN~~ 164 (244)
.+..++.+|+.+|..++..+..+ ..|+..-|..++..+..|++ ++.++|.+.-+. +..--+.+.|-.+.
T Consensus 83 ~L~~everLraei~~l~~~I~~~---------e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESR---------EREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444332 45555566666666666653 333344433332 44444556666666
Q ss_pred HHHHHHh
Q 037149 165 LRIKLET 171 (244)
Q Consensus 165 L~~k~~~ 171 (244)
|...++.
T Consensus 154 l~~~~~~ 160 (632)
T PF14817_consen 154 LQGQVEQ 160 (632)
T ss_pred HHHHHHH
Confidence 6665543
No 201
>PLN03237 DNA topoisomerase 2; Provisional
Probab=22.07 E-value=1.1e+03 Score=26.31 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred eeeeecCCCceeecccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHH----------------------HHHH
Q 037149 45 LIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAK----------------------YESL 102 (244)
Q Consensus 45 lIvfS~~gkl~ef~s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~k----------------------ie~L 102 (244)
+++|.++|++..| .++.+||+.|-.+-..--...-+.-...+..++.++..+ ++.|
T Consensus 989 m~l~d~~G~i~k~--~~~~~Il~~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~~L 1066 (1465)
T PLN03237 989 MHLFDSKGVIKKY--DTPEQILEEFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVEEL 1066 (1465)
T ss_pred EEEEcCCCCccee--CCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHHHH
Q ss_pred hhh------------------------------------------hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037149 103 QRT------------------------------------------QRHLLGEDLGPLSVKELQNLEKQLEGALALARQRK 140 (244)
Q Consensus 103 q~~------------------------------------------~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK 140 (244)
... -..|+|-.|.+|+.+....|..+.+..-..+..-+
T Consensus 1067 ~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~l~ 1146 (1465)
T PLN03237 1067 RQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLK 1146 (1465)
T ss_pred HHcCCCccchhhcccccccccccccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 141 TQ----IMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 141 ~q----l~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.. +..+.++.+.+.-....++-..-+..++.
T Consensus 1147 ~~t~~~lW~~DLd~f~~~~~~~~~~~~~~~~~~~~ 1181 (1465)
T PLN03237 1147 KTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREK 1181 (1465)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 202
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.98 E-value=4.4e+02 Score=21.51 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037149 120 KELQNLEKQLEGALALAR 137 (244)
Q Consensus 120 ~EL~~LE~~Le~sL~~IR 137 (244)
.|+..++..+...+..+|
T Consensus 47 ~d~e~~~~~~~a~~~eLr 64 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELR 64 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 203
>PRK14127 cell division protein GpsB; Provisional
Probab=21.89 E-value=2.1e+02 Score=21.93 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
.+-|++.+|....-.++- +.++.|.+....|.++|..|+.++.+..
T Consensus 19 ~~RGYd~~EVD~FLd~V~---------------~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 19 SMRGYDQDEVDKFLDDVI---------------KDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred CCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888776644432 3456666677778888888888887744
No 204
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=21.84 E-value=1.5e+02 Score=20.64 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149 119 VKELQNLEKQLEGALALARQRKTQI 143 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql 143 (244)
-.++..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999998888664
No 205
>PF02145 Rap_GAP: Rap/ran-GAP; InterPro: IPR000331 The Rap/ran-GAP domain is found in the GTPase activating protein (GAP) responsible for the activation of nuclear Ras-related regulatory proteins Rap1, Rsr1 and Ran in vitro converting it to the putatively inactive GDP-bound state [, ]. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. RanGAP is a leucine rich repeat containing protein which forms a highly curved crescent. Each LRR forms a short beta-strand and a longer alpha-helix that results in a beta-alpha hairpin motif []. The domain is also present in tuberin (a tuberous sclerosis homologue protein) that specifically stimulates the intrinsic GTPase activity of Ras-related protein Rap1A suggesting a possible mechanism for its role in the regulation of cellular growth.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 1SRQ_C 3BRW_B.
Probab=21.70 E-value=61 Score=27.06 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=17.9
Q ss_pred ccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc
Q 037149 16 NRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59 (244)
Q Consensus 16 ~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s 59 (244)
..|-...||.-| -|+.+|||...|..|...+
T Consensus 69 d~q~~~KKrhIG-------------ND~V~IVf~E~~~~y~~~~ 99 (188)
T PF02145_consen 69 DPQQLEKKRHIG-------------NDIVVIVFNESGQPYDPST 99 (188)
T ss_dssp -SSSHHHHHHHT-------------T-SEEEEEESS-----GGG
T ss_pred ChHHHHHHHHhc-------------CCEEEEEEeCCCCccChhh
Confidence 445555666655 7999999999999998776
No 206
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=21.63 E-value=5.9e+02 Score=22.78 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 88 WYQEATKLKAKYESLQRTQRHLLGED---LGPLSVKELQNLEKQLEGALALARQRKT 141 (244)
Q Consensus 88 l~~E~~kLk~kie~Lq~~~r~l~Ged---L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ 141 (244)
+..+..-|.++++.-++..-.++-.+ |..+.-++|+.+-.+|+..|..+.++-.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~Kne 113 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNE 113 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666655544443332 3455678999999999999999887643
No 207
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.50 E-value=35 Score=23.41 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=22.6
Q ss_pred hhhcchhhHHHHHhhcccc-cceeeeeeecCCCc
Q 037149 22 SKRRNGLLKKAYELSVLCD-AEVALIIFSSRGKL 54 (244)
Q Consensus 22 sKRr~GL~KKA~ELSvLCd-aeValIvfS~~gkl 54 (244)
..||.|.+.+ |.|+-+| .+=.+-|++..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 4688886665 8888887 46778888888876
No 208
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.44 E-value=4.2e+02 Score=21.05 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037149 151 LRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 151 Lkkke~~L~eeN~~L~~k~ 169 (244)
+-++++.|..+...+..++
T Consensus 113 ~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3333333333333333333
No 209
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=21.42 E-value=92 Score=26.74 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=38.0
Q ss_pred cchhhHHH----HHhhcccccceeeeeeecC---CCceeecccccchhhhhhhhhc
Q 037149 25 RNGLLKKA----YELSVLCDAEVALIIFSSR---GKLYEFGSAGINKTLERYQRCC 73 (244)
Q Consensus 25 r~GL~KKA----~ELSvLCdaeValIvfS~~---gkl~ef~s~sm~~ileRY~~~~ 73 (244)
++-|+.|- .|++|=++-++.|+|.+|+ +..-.|++..++.++..|+...
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~I 89 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPVI 89 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHHH
Confidence 45566664 5889999999999999874 3344488888999999997753
No 210
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.30 E-value=4.2e+02 Score=20.99 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGE--DLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~Ge--dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
.+..++.-|+.+++.+....+..+.. ..+.|+++.|..|-++|+.--..+ ...|+-.+-.|..|-+.
T Consensus 19 QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~L-----------e~qlk~~e~rLeQEsKA 87 (129)
T PF15372_consen 19 QLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSL-----------ENQLKDYEWRLEQESKA 87 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 44445555666655554332221111 247789999999988887544333 13344445555555555
Q ss_pred HHH
Q 037149 165 LRI 167 (244)
Q Consensus 165 L~~ 167 (244)
..+
T Consensus 88 yhk 90 (129)
T PF15372_consen 88 YHK 90 (129)
T ss_pred HHH
Confidence 544
No 211
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.92 E-value=3.4e+02 Score=25.69 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQ----LEGALALARQRKTQIMIEQVEDLRKKERQL 158 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~----Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L 158 (244)
.+.+.+.+++++|...+..... ++.|--.|-.. =-..++.+-+||+|--...|..|+||...-
T Consensus 8 ~l~~Ki~~~~eqi~~e~~~rd~---------nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y 74 (395)
T PF10267_consen 8 HLQQKILKLKEQIKVEQTARDE---------NVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQY 74 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6777788888877766544221 23333333222 235677888999999999999999985443
No 212
>PRK10869 recombination and repair protein; Provisional
Probab=20.75 E-value=8.1e+02 Score=24.04 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 91 EATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 91 E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
++..+..++..+++-.|.+ | .+++++-..-+.+..-|..+... .+.+..|+++...+.++-..+..+|.
T Consensus 297 ~l~~ie~Rl~~l~~L~rKy-g-----~~~~~~~~~~~~l~~eL~~L~~~-----e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 297 RLAELEQRLSKQISLARKH-H-----VSPEELPQHHQQLLEEQQQLDDQ-----EDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHHh-C-----CCHHHHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554 2 25666666666666666655443 24455566666665555555555555
Q ss_pred h
Q 037149 171 T 171 (244)
Q Consensus 171 ~ 171 (244)
+
T Consensus 366 ~ 366 (553)
T PRK10869 366 Q 366 (553)
T ss_pred H
Confidence 4
No 213
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=20.72 E-value=7.6e+02 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
..+.+..+...|+...|+|..|+++|..
T Consensus 276 ~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 276 YQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456667777888889999988888753
No 214
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.67 E-value=3.1e+02 Score=27.03 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=45.0
Q ss_pred hhcccccceeeeeeecCCCceeec----ccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhc
Q 037149 35 LSVLCDAEVALIIFSSRGKLYEFG----SAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLL 110 (244)
Q Consensus 35 LSvLCdaeValIvfS~~gkl~ef~----s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~ 110 (244)
..+.|+-.+|-+.+++.-.-+.+. +..|.++|--+......+-. ...+ -.+...+.+|..+++.++...+
T Consensus 404 ~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~--~~re-r~l~a~t~kL~~E~e~~q~~~~--- 477 (588)
T KOG3612|consen 404 KLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYS--GSRE-RSLVAATEKLRQEFEELQQTSR--- 477 (588)
T ss_pred hhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhh--cCCc-cchHHHHHHHHHHHHHHHHHHh---
Confidence 456777777766666533333222 23355555444433221110 0011 1455667777777777765433
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 111 GEDLGPLSVKELQNLEKQLEGALALARQRKT 141 (244)
Q Consensus 111 GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ 141 (244)
.+|-.+-.+++..+...|..-.
T Consensus 478 ---------~~l~~~~~~~~~em~~~r~tlE 499 (588)
T KOG3612|consen 478 ---------RELPVPLRNFELEMAEMRKTLE 499 (588)
T ss_pred ---------hhhhhhhhcchHHHHHHHHHHH
Confidence 3344444445555555544433
No 215
>PLN02372 violaxanthin de-epoxidase
Probab=20.63 E-value=7.6e+02 Score=23.66 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037149 92 ATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMI 145 (244)
Q Consensus 92 ~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~ 145 (244)
+.+|.+.++..++.. ++|..++|.+|+.-...|+..-..++.
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~ 404 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFK 404 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554443 566888888888877777765544443
No 216
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=20.57 E-value=4.1e+02 Score=22.56 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 108 HLLGEDLGPLSVKELQNLEKQLEGA----------LALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 108 ~l~GedL~~Ls~~EL~~LE~~Le~s----------L~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
.+-.|+|-.+|-+||..--...|.- |-+==.|+-|....+|..||.--+.|+++|+.|+.-+
T Consensus 7 ~~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 7 KVSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 217
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.53 E-value=4.3e+02 Score=20.77 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 116 PLSVKELQNLEKQLEG---ALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~---sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
++|++|+..+-...+. ....+ ..+.+.+..++..|..+...|.+-...|..
T Consensus 56 G~sL~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 56 RLSLAEIKDQLEEVQRSDKEQREV-AQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred CCCHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665544332 12222 223344666667776666666665555533
No 218
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.53 E-value=7.9e+02 Score=23.85 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~ 166 (244)
-+-.++..++.++..|...++.+. +|...|.+. ...|..|-.+-+...-.++.+....|.++-..|+
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~---------~eN~~L~~r----~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALK---------AENERLQKR----EQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQ 129 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHh----hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665552 233333222 2223333333333444445555555555555555
Q ss_pred HHHHh
Q 037149 167 IKLET 171 (244)
Q Consensus 167 ~k~~~ 171 (244)
..+..
T Consensus 130 ~~l~~ 134 (472)
T TIGR03752 130 GLIDQ 134 (472)
T ss_pred HHHHH
Confidence 55544
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=5.4e+02 Score=22.94 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 120 KELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 120 ~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++.+++.+|+.-...|-+- ..++.+++++...+..+-+.|.++|.+
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~-----~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEI-----QSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 220
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.08 E-value=1.3e+02 Score=27.24 Aligned_cols=44 Identities=11% Similarity=0.282 Sum_probs=31.5
Q ss_pred ceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc-cccchhhhhhhh
Q 037149 7 ELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGINKTLERYQR 71 (244)
Q Consensus 7 ~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s-~sm~~ileRY~~ 71 (244)
.+..|.|.+.|..+=++ .||..|.+ +.| .|-+ |.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 45678888888766333 47888875 223 4667 889999999876
Done!