Query 037149
Match_columns 244
No_of_seqs 249 out of 1679
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.3E-39 4.3E-44 233.9 3.2 73 2-74 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 5.9E-39 2E-43 236.0 3.6 76 2-77 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.8E-37 6.1E-42 231.9 3.2 72 1-72 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 3.7E-37 1.3E-41 227.3 3.0 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 9.1E-37 3.1E-41 229.5 4.0 78 1-78 9-91 (103)
6 2jee_A YIIU; FTSZ, septum, coi 92.4 1.1 3.9E-05 31.5 8.7 46 117-167 3-48 (81)
7 3hnw_A Uncharacterized protein 86.2 9.8 0.00034 29.3 11.2 71 87-171 65-135 (138)
8 3nmd_A CGMP dependent protein 84.2 7.2 0.00025 26.7 7.9 52 114-172 15-66 (72)
9 2w6a_A ARF GTPase-activating p 84.1 6.9 0.00024 25.7 8.3 53 115-167 8-62 (63)
10 2oqq_A Transcription factor HY 82.7 3.8 0.00013 25.0 5.3 27 144-170 15-41 (42)
11 1j1d_C Troponin I, TNI; THIN f 80.6 11 0.00038 28.9 8.6 31 113-143 54-84 (133)
12 2dgc_A Protein (GCN4); basic d 77.1 7.5 0.00026 25.8 6.0 34 134-171 22-55 (63)
13 2yy0_A C-MYC-binding protein; 76.8 3.9 0.00013 26.3 4.3 28 144-171 24-51 (53)
14 1dip_A Delta-sleep-inducing pe 75.8 3.8 0.00013 28.2 4.2 25 143-167 19-43 (78)
15 1dh3_A Transcription factor CR 73.8 11 0.00038 24.2 6.0 33 136-172 16-48 (55)
16 2dfs_A Myosin-5A; myosin-V, in 72.5 25 0.00086 35.9 11.2 85 87-173 957-1043(1080)
17 1j1e_C Troponin I, TNI; THIN f 69.4 19 0.00066 29.0 7.7 31 113-143 54-84 (180)
18 1m1j_B Fibrinogen beta chain; 68.3 74 0.0025 29.3 13.4 41 27-72 55-97 (464)
19 2v71_A Nuclear distribution pr 68.3 46 0.0016 26.9 12.5 26 147-172 89-114 (189)
20 2v66_B Nuclear distribution pr 68.3 34 0.0012 25.3 9.3 31 144-174 75-105 (111)
21 1t2k_D Cyclic-AMP-dependent tr 66.3 19 0.00065 23.4 6.0 34 135-172 15-48 (61)
22 2wt7_A Proto-oncogene protein 65.9 19 0.00066 23.6 6.0 32 137-172 18-49 (63)
23 1ci6_A Transcription factor AT 65.7 21 0.00072 23.5 6.2 29 145-173 22-50 (63)
24 3hnw_A Uncharacterized protein 64.6 40 0.0014 25.8 8.4 52 121-172 76-129 (138)
25 1go4_E MAD1 (mitotic arrest de 63.0 33 0.0011 24.9 7.2 23 150-172 72-94 (100)
26 3oja_B Anopheles plasmodium-re 62.8 63 0.0021 29.9 11.2 18 87-104 460-477 (597)
27 1jnm_A Proto-oncogene C-JUN; B 62.3 25 0.00085 22.9 6.0 34 135-172 15-48 (62)
28 2oxj_A Hybrid alpha/beta pepti 59.9 11 0.00039 21.8 3.3 25 147-171 2-26 (34)
29 3s9g_A Protein hexim1; cyclin 58.6 30 0.001 25.1 6.1 79 56-168 9-87 (104)
30 1ytz_T Troponin T; muscle, THI 56.3 22 0.00074 26.2 5.3 31 113-143 38-68 (107)
31 2v71_A Nuclear distribution pr 56.2 79 0.0027 25.6 10.9 36 138-173 122-157 (189)
32 1gk7_A Vimentin; intermediate 56.1 22 0.00076 21.2 4.4 28 143-170 10-37 (39)
33 1gd2_E Transcription factor PA 54.0 41 0.0014 22.7 6.0 41 131-171 18-61 (70)
34 2zqm_A Prefoldin beta subunit 53.9 58 0.002 23.3 7.8 42 129-171 68-109 (117)
35 1a93_B MAX protein, coiled coi 53.6 18 0.00061 21.0 3.5 25 139-163 7-31 (34)
36 1p9i_A Cortexillin I/GCN4 hybr 53.5 14 0.00049 20.3 2.9 18 155-172 8-25 (31)
37 1deq_A Fibrinogen (alpha chain 53.2 1.2E+02 0.004 27.2 10.5 9 62-70 54-62 (390)
38 3gp4_A Transcriptional regulat 52.4 48 0.0016 25.1 7.1 57 116-173 59-115 (142)
39 2l5g_B Putative uncharacterize 52.2 37 0.0013 20.6 5.0 38 117-162 2-39 (42)
40 3m48_A General control protein 51.7 15 0.00053 21.1 3.0 24 148-171 2-25 (33)
41 3ghg_A Fibrinogen alpha chain; 49.3 1.7E+02 0.0059 27.4 11.3 19 87-105 61-79 (562)
42 2jee_A YIIU; FTSZ, septum, coi 48.9 39 0.0013 23.5 5.4 33 139-171 13-45 (81)
43 2aze_A Transcription factor DP 48.8 85 0.0029 24.6 7.9 48 118-167 3-50 (155)
44 3na7_A HP0958; flagellar bioge 45.4 1E+02 0.0035 25.6 8.7 25 118-142 88-112 (256)
45 1dip_A Delta-sleep-inducing pe 45.3 11 0.00038 25.9 2.0 25 145-169 14-38 (78)
46 3gpv_A Transcriptional regulat 45.1 76 0.0026 24.1 7.2 57 116-173 73-129 (148)
47 1kd8_B GABH BLL, GCN4 acid bas 44.4 28 0.00094 20.4 3.3 23 148-170 3-25 (36)
48 3c3f_A Alpha/beta peptide with 43.5 30 0.001 20.0 3.3 24 148-171 3-26 (34)
49 1go4_E MAD1 (mitotic arrest de 42.0 34 0.0012 24.8 4.3 29 146-174 12-40 (100)
50 3oja_B Anopheles plasmodium-re 41.9 1.4E+02 0.0047 27.5 9.8 28 144-171 549-576 (597)
51 1q08_A Zn(II)-responsive regul 41.9 57 0.0019 22.6 5.6 56 116-172 16-72 (99)
52 3twe_A Alpha4H; unknown functi 41.3 34 0.0012 18.2 3.1 21 87-107 5-25 (27)
53 1am9_A Srebp-1A, protein (ster 40.9 41 0.0014 23.2 4.5 27 146-172 50-76 (82)
54 1fxk_A Prefoldin; archaeal pro 40.5 93 0.0032 21.8 8.3 27 145-171 78-104 (107)
55 2rpa_A Katanin P60 ATPase-cont 40.2 3.2 0.00011 28.9 -1.4 34 29-73 16-49 (78)
56 1ci6_A Transcription factor AT 39.9 70 0.0024 20.8 5.4 28 144-171 35-62 (63)
57 1j1d_B Troponin T, TNT; THIN f 39.7 96 0.0033 22.6 6.5 31 113-143 38-68 (106)
58 1hjb_A Ccaat/enhancer binding 39.7 83 0.0028 22.1 6.0 27 148-174 38-64 (87)
59 2xus_A Breast cancer metastasi 39.2 71 0.0024 20.1 5.3 33 119-158 12-44 (49)
60 1nkp_B MAX protein, MYC proto- 38.7 91 0.0031 21.2 6.3 27 145-171 53-79 (83)
61 3c3g_A Alpha/beta peptide with 38.1 57 0.0019 18.7 3.9 24 148-171 2-25 (33)
62 1gu4_A CAAT/enhancer binding p 37.8 97 0.0033 21.3 6.0 26 148-173 38-63 (78)
63 3m9b_A Proteasome-associated A 37.4 51 0.0017 27.9 5.3 41 121-166 55-95 (251)
64 2w6b_A RHO guanine nucleotide 37.0 69 0.0024 20.5 4.6 30 143-172 7-36 (56)
65 2oa5_A Hypothetical protein BQ 36.9 21 0.0007 26.4 2.5 22 148-169 10-31 (110)
66 1deb_A APC protein, adenomatou 36.5 48 0.0016 20.9 3.7 25 149-173 6-30 (54)
67 1t2k_D Cyclic-AMP-dependent tr 36.2 78 0.0027 20.3 5.1 26 144-169 34-59 (61)
68 2l5g_A GPS2 protein, G protein 36.1 52 0.0018 19.4 3.6 21 146-166 15-35 (38)
69 2bni_A General control protein 34.2 46 0.0016 19.2 3.1 23 148-170 3-25 (34)
70 3nrf_A APAG protein; structura 33.6 5 0.00017 29.6 -1.3 44 11-59 21-64 (106)
71 3aei_A Prefoldin beta subunit 32.5 84 0.0029 21.7 4.8 25 143-167 72-96 (99)
72 3s9g_A Protein hexim1; cyclin 32.5 1.4E+02 0.0048 21.5 8.7 69 113-186 26-94 (104)
73 4gfh_A DNA topoisomerase 2; to 31.2 1.1E+02 0.0036 31.8 7.5 43 26-72 958-1000(1177)
74 3q4f_C DNA repair protein XRCC 30.6 53 0.0018 26.4 4.1 23 146-168 161-183 (186)
75 1ytz_I Troponin I; muscle, THI 29.7 1.4E+02 0.0047 24.0 6.4 28 113-141 52-79 (182)
76 2ky6_A Mediator of RNA polymer 29.5 34 0.0012 27.1 2.8 36 36-71 116-159 (166)
77 1i84_S Smooth muscle myosin he 29.5 4.7E+02 0.016 26.7 12.2 16 87-102 861-876 (1184)
78 1nkp_A C-MYC, MYC proto-oncoge 28.3 1.5E+02 0.0051 20.5 6.3 25 147-171 60-84 (88)
79 2zxx_A Geminin; coiled-coil, c 28.0 70 0.0024 22.1 3.9 28 144-171 39-66 (79)
80 3i00_A HIP-I, huntingtin-inter 27.9 1.9E+02 0.0063 21.5 9.8 63 85-171 17-79 (120)
81 1m2d_A [2Fe-2S] ferredoxin; th 27.9 27 0.00091 25.2 1.8 32 39-71 59-91 (110)
82 3oja_A Leucine-rich immune mol 27.3 3.3E+02 0.011 24.2 11.8 41 130-174 423-463 (487)
83 1kd8_A GABH AIV, GCN4 acid bas 26.4 54 0.0018 19.1 2.5 21 149-169 4-24 (36)
84 1z56_A Ligase interacting fact 26.3 35 0.0012 28.6 2.5 36 9-44 117-152 (246)
85 1uo4_A General control protein 26.2 77 0.0026 18.3 3.1 24 148-171 3-26 (34)
86 3w03_C DNA repair protein XRCC 25.9 86 0.0029 25.2 4.6 28 144-171 150-177 (184)
87 3hvz_A Uncharacterized protein 25.6 36 0.0012 23.3 2.1 24 44-67 7-31 (78)
88 2hy6_A General control protein 24.9 84 0.0029 18.1 3.1 23 148-170 3-25 (34)
89 1nlw_A MAD protein, MAX dimeri 24.9 1.1E+02 0.0038 20.9 4.5 25 146-170 47-71 (80)
90 2v66_B Nuclear distribution pr 24.7 2.1E+02 0.0071 21.0 8.4 24 148-171 37-60 (111)
91 3a7p_A Autophagy protein 16; c 24.4 2.5E+02 0.0085 21.8 9.6 21 147-167 111-131 (152)
92 3qx3_A DNA topoisomerase 2-bet 23.9 2.3E+02 0.008 27.9 8.0 115 45-161 598-779 (803)
93 3v1a_A Computational design, M 23.0 1.4E+02 0.0049 18.5 5.4 39 125-163 6-44 (48)
94 1wlq_A Geminin; coiled-coil; 2 21.8 1E+02 0.0036 21.5 3.8 25 144-168 43-67 (83)
95 1g6u_A Domain swapped dimer; d 21.7 1.4E+02 0.0047 17.8 6.6 20 115-134 15-34 (48)
96 2wuj_A Septum site-determining 20.9 1.7E+02 0.0058 18.5 4.5 18 114-131 17-34 (57)
97 2lw9_A Unconventionnal myosin- 20.6 85 0.0029 19.6 2.8 35 90-125 6-40 (51)
98 2wq1_A General control protein 20.6 1.3E+02 0.0045 17.1 3.9 21 149-169 3-23 (33)
99 1q06_A Transcriptional regulat 20.1 2.1E+02 0.0073 21.1 5.7 55 116-171 57-111 (135)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.3e-39 Score=233.94 Aligned_cols=73 Identities=52% Similarity=0.881 Sum_probs=70.3
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhcC
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCF 74 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~~ 74 (244)
||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|++|++||+||+.++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=5.9e-39 Score=236.03 Aligned_cols=76 Identities=50% Similarity=0.845 Sum_probs=73.1
Q ss_pred CccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhcCCCC
Q 037149 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQ 77 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~~~~~ 77 (244)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+|++|+|+|++|.+||+||+.++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999876443
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.8e-37 Score=231.90 Aligned_cols=72 Identities=40% Similarity=0.663 Sum_probs=70.2
Q ss_pred CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
|||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++||+|+|+||+|..||+||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999754
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=3.7e-37 Score=227.34 Aligned_cols=70 Identities=37% Similarity=0.664 Sum_probs=68.7
Q ss_pred CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhh
Q 037149 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQ 70 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~ 70 (244)
|||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++|++|+|+|++|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=9.1e-37 Score=229.46 Aligned_cols=78 Identities=37% Similarity=0.698 Sum_probs=72.2
Q ss_pred CCccccceeeecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhh-----hhhhcCC
Q 037149 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLER-----YQRCCFN 75 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileR-----Y~~~~~~ 75 (244)
|||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++|++|+|+|++|..+|++ |.+++..
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~Gk~l~~~c~~ 88 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLN 88 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHHHHHHHHTTC
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 6666655
Q ss_pred CCC
Q 037149 76 PQD 78 (244)
Q Consensus 76 ~~~ 78 (244)
..+
T Consensus 89 ~~~ 91 (103)
T 1k6o_B 89 SPD 91 (103)
T ss_dssp C--
T ss_pred CCC
Confidence 443
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.36 E-value=1.1 Score=31.50 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
+|++=|.+||..+..++..| .++.-+|++||.|-..|.++|..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888999999999999888 45566778888777777777777554
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.25 E-value=9.8 Score=29.29 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~ 166 (244)
+...|+.+++.+++.|+.....+ -+|+..|-..|...--.+.+ ...++..|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888777776654443 45566665555554444433 23555666666666666666666
Q ss_pred HHHHh
Q 037149 167 IKLET 171 (244)
Q Consensus 167 ~k~~~ 171 (244)
.++.+
T Consensus 131 ~~~~~ 135 (138)
T 3hnw_A 131 TELND 135 (138)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.24 E-value=7.2 Score=26.72 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 114 LGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+++++. +.+|+..|......||.+. +.|..|.+......++.+.|+.+|...
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 8888888999999998874 557888888888888888999888764
No 9
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=84.10 E-value=6.9 Score=25.70 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 115 GPLSVKELQNLEKQLEGALALARQ--RKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 115 ~~Ls~~EL~~LE~~Le~sL~~IR~--rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
++.++.|-.++-+.|-.+=.+|-. +-+.-+.+++.-++++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 456778888777777776666632 22334678888899999999999999874
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.67 E-value=3.8 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
|.....+|..+...|+.||..||+.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 455678888889999999999998764
No 11
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=80.58 E-value=11 Score=28.93 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQI 143 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql 143 (244)
+|++||.++|+.+=+.|-..+..+-+-|.-+
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7999999999999999999998887766544
No 12
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=77.13 E-value=7.5 Score=25.78 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 134 ALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 134 ~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.+-|.|| .+.+.+|..+...|..+|..|..++..
T Consensus 22 rrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 22 RRSRARK----LQRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445665 467799999999999999999998865
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.85 E-value=3.9 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
|..++.+||.|...|.+++..|+.++..
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999888864
No 14
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=75.79 E-value=3.8 Score=28.15 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
++.++|.+|..|...|+.||..|+.
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666777766654
No 15
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=73.82 E-value=11 Score=24.21 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=26.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 136 ARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 136 IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
-|.||. ..+++|..++..|..+|..|..++...
T Consensus 16 SR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 16 SRRKKK----EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 567889999999999999999988763
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.45 E-value=25 Score=35.94 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhcc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESLQRTQRHLLG--EDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r~l~G--edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
.+..|+.+|++.++.|+.......- ..+.. =-+|+..|+..++...+.-...... +.+..++|+.|...|.++|..
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~-L~~e~~~l~~~~~~~~ke~~~lee~-~~~~~~~L~~kv~~L~~e~~~ 1034 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLS-LQEEIAKLRKELHQTQTEKKTIEEW-ADKYKHETEQLVSELKEQNTL 1034 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666665543221110 00000 0233344444444444333322221 222335788999999999999
Q ss_pred HHHHHHhcc
Q 037149 165 LRIKLETEG 173 (244)
Q Consensus 165 L~~k~~~~~ 173 (244)
|+.++.+.+
T Consensus 1035 L~qq~~~l~ 1043 (1080)
T 2dfs_A 1035 LKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988755
No 17
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=69.41 E-value=19 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQI 143 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql 143 (244)
+|++||.++|+.+-..|-..+..+-+-|.-+
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8999999999999999999998887776554
No 18
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.33 E-value=74 Score=29.33 Aligned_cols=41 Identities=17% Similarity=0.062 Sum_probs=22.7
Q ss_pred hhhHHHHHhhcccccceeeeeeecCCCceeecc-cc-cchhhhhhhhh
Q 037149 27 GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AG-INKTLERYQRC 72 (244)
Q Consensus 27 GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s-~s-m~~ileRY~~~ 72 (244)
|+-||.-|.. -||.-|.+ +++.+=.||. .+ +.+.|-+|++.
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhh
Confidence 5567777666 66666655 6677777776 43 78888888764
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.31 E-value=46 Score=26.94 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
++..|++....|.+.|..|+++|.+.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666667777777777776553
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.27 E-value=34 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
...++.++..|-....|.|..|...|.+.+.
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~EKe~ 105 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999988653
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.34 E-value=19 Score=23.39 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=26.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 135 LARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 135 ~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+-|.||. +.+..|..+...|..+|..|..++...
T Consensus 15 k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 15 RSRQKRK----VWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356663 567889999999999999999988764
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.88 E-value=19 Score=23.59 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 137 RQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 137 R~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
|.||. +.+..|+.+...|..+|..|..++...
T Consensus 18 R~rKk----~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 18 RNRRR----ELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55553 567899999999999999999998763
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.72 E-value=21 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
.+.+..|..+...|..+|..|..++..-.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888999999999999999887643
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.58 E-value=40 Score=25.79 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 121 ELQNLEKQLEGALALARQRKTQIMI--EQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 121 EL~~LE~~Le~sL~~IR~rK~ql~~--e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+...|+.+++..-+.+-+=|.++.. ..++.++++...|.+++..|++++.+-
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665566566666543 344556666677777777777766553
No 25
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.96 E-value=33 Score=24.91 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 037149 150 DLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 150 ~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
..++....|+.|+..|+.++...
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888887777654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.75 E-value=63 Score=29.86 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 037149 87 SWYQEATKLKAKYESLQR 104 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~ 104 (244)
.+..++.++++++...++
T Consensus 460 ~~~~~i~~l~~~~~~~~~ 477 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQ 477 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666554433
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.30 E-value=25 Score=22.91 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 135 LARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 135 ~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+-|.|| .+.+..|..++..|..+|..|..++..-
T Consensus 15 k~R~rK----k~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 15 KSRKRK----LERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 3667899999999999999999988763
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=59.87 E-value=11 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.+++|..|+..|..+|..|..++..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3567777888888888888776654
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=58.58 E-value=30 Score=25.08 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=47.0
Q ss_pred eecccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 037149 56 EFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAL 135 (244)
Q Consensus 56 ef~s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~ 135 (244)
+|-+.....+.|+|..-+-.. ++ . +.+-+||..|.++++.++.+++.+ +.+...
T Consensus 9 eFl~KdFSe~YE~~h~ErL~~---mS-K--qELIqEYl~LE~~~s~le~e~~rl-------------r~~~~~------- 62 (104)
T 3s9g_A 9 EFLQRDFSETYERYHTESLQN---MS-K--QELIKEYLELEKSLSRMEDENNRL-------------RLESKR------- 62 (104)
T ss_dssp -----CCHHHHHHHHHHHHHT---SC-H--HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cc-H--HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcc-------
Confidence 466656666777776543211 11 1 367788888888888877665432 222111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 136 ARQRKTQIMIEQVEDLRKKERQLGDINKQLRIK 168 (244)
Q Consensus 136 IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k 168 (244)
...+|..|..+...|..||..|...
T Consensus 63 --------~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 63 --------LDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1466788888888899999998764
No 30
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=56.26 E-value=22 Score=26.19 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQI 143 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql 143 (244)
+|++||.++|+.+=+.|-..+..+-+-|.-+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8999999999999999999888887666443
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=56.23 E-value=79 Score=25.55 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 138 QRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 138 ~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
.|+......++.++..|-....|.|..|...+.+.+
T Consensus 122 Er~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555678888888899999999999999888744
No 32
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=56.05 E-value=22 Score=21.20 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
-+.+.+...=.|++.|+.+|+.|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666788999999999998874
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.95 E-value=41 Score=22.70 Aligned_cols=41 Identities=29% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 131 GALALARQRKTQIM---IEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 131 ~sL~~IR~rK~ql~---~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.|-...|.||.+-| ..++..|...-..|..+|..|+..+..
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667765432 233444444444455666666655543
No 34
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.90 E-value=58 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 129 LEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 129 Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++.++..+..++..+ ...|+.|.++...+.++-..|+.++.+
T Consensus 68 ~~ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333 667788888888888887777777765
No 35
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=53.59 E-value=18 Score=21.05 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 037149 139 RKTQIMIEQVEDLRKKERQLGDINK 163 (244)
Q Consensus 139 rK~ql~~e~i~~Lkkke~~L~eeN~ 163 (244)
||++-....|++|+++-..|.++-+
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 5666666667777666555555433
No 36
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=53.51 E-value=14 Score=20.27 Aligned_cols=18 Identities=39% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 037149 155 ERQLGDINKQLRIKLETE 172 (244)
Q Consensus 155 e~~L~eeN~~L~~k~~~~ 172 (244)
...|..+|++|+.|+++.
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888999999998773
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.24 E-value=1.2e+02 Score=27.24 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=6.4
Q ss_pred cchhhhhhh
Q 037149 62 INKTLERYQ 70 (244)
Q Consensus 62 m~~ileRY~ 70 (244)
|+.+|++..
T Consensus 54 Lqg~Ldk~e 62 (390)
T 1deq_A 54 MKGLIDEVD 62 (390)
T ss_pred HHHHHHHhh
Confidence 777777665
No 38
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.36 E-value=48 Score=25.13 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
++|++++..+-...+..-..+..+ .+++.+++..+..+...|+..-..|..++...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999988876654432222222 356778888888888888888888888887643
No 39
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.17 E-value=37 Score=20.61 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 037149 117 LSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDIN 162 (244)
Q Consensus 117 Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN 162 (244)
+|-+||-+=-..++.-+..+ .++|.+||+|.+.|.+.-
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhh
Confidence 34445444444444444444 356888898888887753
No 40
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.70 E-value=15 Score=21.10 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 148 VEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++|..|+..|..+|..|..++..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHH
Confidence 456777888888888888877754
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.28 E-value=1.7e+02 Score=27.41 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=10.2
Q ss_pred HhHHHHHHHHHHHHHHhhh
Q 037149 87 SWYQEATKLKAKYESLQRT 105 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~ 105 (244)
.+...|.+|+.+++.+++.
T Consensus 61 DltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhh
Confidence 3444556666666655443
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.89 E-value=39 Score=23.54 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 139 RKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 139 rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.|-+-..+.|..|+-....|.++|..|..+..+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556789999999999999999999998877
No 43
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=48.79 E-value=85 Score=24.56 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 118 SVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 118 s~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
|..|.+.||..-...+.+|+.++.+| .++...+.=-+.|.+-|+.+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999888899998776554 2222233333466667766543
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=45.45 E-value=1e+02 Score=25.59 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh
Q 037149 118 SVKELQNLEKQLEGALALARQRKTQ 142 (244)
Q Consensus 118 s~~EL~~LE~~Le~sL~~IR~rK~q 142 (244)
+.+|+..|.+.++..-.+|...-.+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666665544333
No 45
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=45.31 E-value=11 Score=25.87 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
.++++-||.+...|.+.|..|..+-
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999997643
No 46
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=45.08 E-value=76 Score=24.10 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
++|++++..+-...+..-..+.. ..+++.+++..+.++...|++.-..|..++...+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998887654432222222 2346778888888888888888888888887654
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.40 E-value=28 Score=20.38 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037149 148 VEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+.+|..|+..|..+|..|..++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Confidence 45555555555566655555543
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.46 E-value=30 Score=19.95 Aligned_cols=24 Identities=4% Similarity=-0.027 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 148 VEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++|..|+..|..+|..|..++..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 566677777777777777766543
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.01 E-value=34 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 146 EQVEDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
+++..|+++...|..||..|++++..-+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999998876543
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.92 E-value=1.4e+02 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
|...++..+++...+.+++..++.++++
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666655554
No 51
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.86 E-value=57 Score=22.57 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 116 PLSVKELQNLEKQLEGALA-LARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~-~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
++|++|+..+-...+..-. .+ ..-..++.+++..+.++...|+..-..|...+...
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999988765431110 11 12234677777888888888877777777776543
No 52
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.25 E-value=34 Score=18.16 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHhhhhh
Q 037149 87 SWYQEATKLKAKYESLQRTQR 107 (244)
Q Consensus 87 ~l~~E~~kLk~kie~Lq~~~r 107 (244)
.++.|+..|++++.+|++..|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777777666554
No 53
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=40.86 E-value=41 Score=23.16 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 146 EQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
+-|..|+.....|.++|..|+..+++.
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888999999999999988763
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.53 E-value=93 Score=21.83 Aligned_cols=27 Identities=4% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
...|+.|.++...+.++-..|+.++.+
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888887777777777776654
No 55
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.18 E-value=3.2 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=27.9
Q ss_pred hHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhhc
Q 037149 29 LKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCC 73 (244)
Q Consensus 29 ~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~~ 73 (244)
+|+|+|.+.+++-|.|++.|.. +-.-|+||....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 6899999999999999887653 667778887754
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.89 E-value=70 Score=20.83 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+......|+.+...|..|+..|+.-|.+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666677777777777665543
No 57
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=39.72 E-value=96 Score=22.61 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQI 143 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql 143 (244)
+|++||.++|+.+-..|-..+..+-+-|.-+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999999999999999888887766544
No 58
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.71 E-value=83 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 148 VEDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
..+++.+...|..+|..|+.+|.+-..
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888999999999999987543
No 59
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=39.18 E-value=71 Score=20.06 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 037149 119 VKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQL 158 (244)
Q Consensus 119 ~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L 158 (244)
+++|..||++. -.-|.|+..+.|..++++..++
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777543 3446677778888777765554
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.68 E-value=91 Score=21.18 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 145 IEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 145 ~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
.+++..|+.....|..+|..|..++..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777777776654
No 61
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.14 E-value=57 Score=18.67 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 148 VEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++|..|+..|..+|..|..++..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHH
Confidence 455666777777777777666543
No 62
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.85 E-value=97 Score=21.26 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 148 VEDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
..+++.+...|..+|..|+.+|..-.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999997643
No 63
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.45 E-value=51 Score=27.91 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037149 121 ELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 121 EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~ 166 (244)
.+.+|+.+++.. ..|++.|.+.+..++++...|.+|+..|+
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555554332 23445566777777777777777777764
No 64
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.04 E-value=69 Score=20.54 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRIKLETE 172 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~k~~~~ 172 (244)
-+.+.+-.|+-.+..|+.+|+.|.+-+++.
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999888764
No 65
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.91 E-value=21 Score=26.42 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037149 148 VEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
+++|.++...|+=||+.|++++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 66
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.49 E-value=48 Score=20.95 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 037149 149 EDLRKKERQLGDINKQLRIKLETEG 173 (244)
Q Consensus 149 ~~Lkkke~~L~eeN~~L~~k~~~~~ 173 (244)
++|-+++..|..||..|+++++...
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 4556667777888999999887743
No 67
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.20 E-value=78 Score=20.28 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~ 169 (244)
+..+...|+.+...|.+++..|+..|
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777888888888888887655
No 68
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.07 E-value=52 Score=19.41 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037149 146 EQVEDLRKKERQLGDINKQLR 166 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~ 166 (244)
++|..|+.|...|++|.-+|-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888878877776664
No 69
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.16 E-value=46 Score=19.19 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037149 148 VEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+++|..|+..|..+|..|..++.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHH
Confidence 45566666666666666666554
No 70
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=33.58 E-value=5 Score=29.58 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=34.7
Q ss_pred ecCCcccchhhhhhcchhhHHHHHhhcccccceeeeeeecCCCceeecc
Q 037149 11 IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 59 (244)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s 59 (244)
|.++.-...||-=.-..|.+|.-+||.+| ++.|+++|+-|-.-+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 45666677788888888999999999655 999999999876544
No 71
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=32.46 E-value=84 Score=21.74 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 143 IMIEQVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 143 l~~e~i~~Lkkke~~L~eeN~~L~~ 167 (244)
....+|+.|+++|+.+.|+-..|+.
T Consensus 72 ~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 72 VYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4668899999999999998776653
No 72
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.45 E-value=1.4e+02 Score=21.52 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhc
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWNSA 186 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~~~~~~~~~~~~~~ 186 (244)
.|.++|-.||.+==-+|+..+.++-+.-+.+-.. -...-.++..|..+-..|+..-..- ......|..+
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~-~~~~~~~v~eLe~everL~~ENq~L----~~e~~~~~~~ 94 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE-SKRLDARVRELELELDRLRAENLQL----LTENELHRQQ 94 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHH----HHHHHhhccc
Confidence 3456677777664444555555542222222111 2223467778888777777644331 2223457664
No 73
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=31.23 E-value=1.1e+02 Score=31.75 Aligned_cols=43 Identities=16% Similarity=0.403 Sum_probs=27.1
Q ss_pred chhhHHHHHhhcccccceeeeeeecCCCceeecccccchhhhhhhhh
Q 037149 26 NGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRC 72 (244)
Q Consensus 26 ~GL~KKA~ELSvLCdaeValIvfS~~gkl~ef~s~sm~~ileRY~~~ 72 (244)
++|+|+- .|.+-..+ .-+++|.+.|++..|. ++++||+.|-.+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~--~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYN--SVNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECS--SHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcC--CHHHHHHHHHHH
Confidence 4555443 34333222 2578999999998885 477888777554
No 74
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.56 E-value=53 Score=26.41 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037149 146 EQVEDLRKKERQLGDINKQLRIK 168 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~k 168 (244)
+.|.+|+.+-..|++||..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44588999999999999999764
No 75
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=29.70 E-value=1.4e+02 Score=23.98 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 113 DLGPLSVKELQNLEKQLEGALALARQRKT 141 (244)
Q Consensus 113 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ 141 (244)
+|++ |.++|+.+-+.|-..+..+-+-|.
T Consensus 52 nid~-se~~L~e~ckELh~~I~~LEeEKY 79 (182)
T 1ytz_I 52 SLPG-SMQELQELSKKLHAKIDSVDEERY 79 (182)
T ss_dssp CCCC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888 999999999999988888766554
No 76
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=29.53 E-value=34 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.466 Sum_probs=25.6
Q ss_pred hcccccceeeeeeecCCCcee-ecccc-------cchhhhhhhh
Q 037149 36 SVLCDAEVALIIFSSRGKLYE-FGSAG-------INKTLERYQR 71 (244)
Q Consensus 36 SvLCdaeValIvfS~~gkl~e-f~s~s-------m~~ileRY~~ 71 (244)
+.-|++.|-+++||++-+.|- |...+ +.+||..|++
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999888886 65522 5555555544
No 77
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=29.47 E-value=4.7e+02 Score=26.67 Aligned_cols=16 Identities=13% Similarity=0.109 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHHHHHH
Q 037149 87 SWYQEATKLKAKYESL 102 (244)
Q Consensus 87 ~l~~E~~kLk~kie~L 102 (244)
.+..++..++.+++.+
T Consensus 861 ~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 861 AKDEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 78
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.25 E-value=1.5e+02 Score=20.53 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 147 QVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+...+......|..+|..|+.+|.+
T Consensus 60 ~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 60 EEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445577788888877765
No 79
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.98 E-value=70 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+..+|+.++.....|.++|..|..-..+
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667778888887665544
No 80
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.92 E-value=1.9e+02 Score=21.48 Aligned_cols=63 Identities=27% Similarity=0.396 Sum_probs=39.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037149 85 TQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQ 164 (244)
Q Consensus 85 ~q~l~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~ 164 (244)
+..|+.++..|+..++.+..+.+.+ +.+|..=-.+|+.-|..-|.-| .....+|..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~---------v~ql~~~i~~Le~eL~e~r~~~---------------q~a~~e~e~ 72 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRV---------VLQLKGHVSELEADLAEQQHLR---------------QQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4579999999999999887776665 4455554444444444444332 334455666
Q ss_pred HHHHHHh
Q 037149 165 LRIKLET 171 (244)
Q Consensus 165 L~~k~~~ 171 (244)
|+..++.
T Consensus 73 Lr~e~~~ 79 (120)
T 3i00_A 73 LRAELDE 79 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 81
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=27.91 E-value=27 Score=25.21 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=23.0
Q ss_pred cccceeeeeeecCCCceeecc-cccchhhhhhhh
Q 037149 39 CDAEVALIIFSSRGKLYEFGS-AGINKTLERYQR 71 (244)
Q Consensus 39 CdaeValIvfS~~gkl~ef~s-~sm~~ileRY~~ 71 (244)
|+..-.|+|+ |+|..|...+ ..+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5555555555 8888887777 669999988753
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.34 E-value=3.3e+02 Score=24.24 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037149 130 EGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQ 174 (244)
Q Consensus 130 e~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~~~~ 174 (244)
+..+...|.+ +...++..+..+..+.|+|..|++.+.+.+.
T Consensus 423 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 423 YVEQQSVQNN----AIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc----chhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 3344444444 3344566677788888888888888877543
No 83
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.38 E-value=54 Score=19.13 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037149 149 EDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 149 ~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|..|+..|..+|..|..++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 445555555555555555444
No 84
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=26.26 E-value=35 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred eeecCCcccchhhhhhcchhhHHHHHhhccccccee
Q 037149 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVA 44 (244)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeVa 44 (244)
-.|++...=++|+-||-.|+..|-.+|+.--|-+=+
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~e 152 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGE 152 (246)
T ss_dssp ------------------------------------
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccch
Confidence 345555555899999999999998888755444433
No 85
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.19 E-value=77 Score=18.27 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 148 VEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++|..|+..|..+|..|..++..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 456666777777777777666543
No 86
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.90 E-value=86 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+++.+..|+.+...|+++|..|+....+
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788999999999999999886654
No 87
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.62 E-value=36 Score=23.28 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=19.0
Q ss_pred eeeeeecCCCceeecc-cccchhhh
Q 037149 44 ALIIFSSRGKLYEFGS-AGINKTLE 67 (244)
Q Consensus 44 alIvfS~~gkl~ef~s-~sm~~ile 67 (244)
-+.||.|+|.+++++. +.+.++..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHH
Confidence 3689999999999998 66666653
No 88
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.88 E-value=84 Score=18.07 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037149 148 VEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+++|..|+..|..+|..|...+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 35566666666666766665554
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.87 E-value=1.1e+02 Score=20.88 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 146 EQVEDLRKKERQLGDINKQLRIKLE 170 (244)
Q Consensus 146 e~i~~Lkkke~~L~eeN~~L~~k~~ 170 (244)
+-|..|+.++..+.+++..|+.+..
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554443
No 90
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.71 E-value=2.1e+02 Score=20.99 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 148 VEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 148 i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
+..|++....|...|..|..+|.+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.44 E-value=2.5e+02 Score=21.78 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037149 147 QVEDLRKKERQLGDINKQLRI 167 (244)
Q Consensus 147 ~i~~Lkkke~~L~eeN~~L~~ 167 (244)
+...+..|.+.|++||..|-.
T Consensus 111 q~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888866543
No 92
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=23.91 E-value=2.3e+02 Score=27.91 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred eeeeecCCCceeecccccchhhhhhhhhcCCCCCCCchhhhHHhHHHHHHHHHH----------------------HHHH
Q 037149 45 LIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAK----------------------YESL 102 (244)
Q Consensus 45 lIvfS~~gkl~ef~s~sm~~ileRY~~~~~~~~~~~~~~e~q~l~~E~~kLk~k----------------------ie~L 102 (244)
+++|.+.|++..| -++++||+.|-.+-..-...........+..++.+|..+ ++.|
T Consensus 598 ~~l~d~~g~~pk~--~~l~eiL~~F~~~R~ev~~rR~~~lL~kLq~el~kL~nk~rFI~~vi~g~l~i~nkkk~~li~eL 675 (803)
T 3qx3_A 598 MVLFDHMGCLKKY--ETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQML 675 (803)
T ss_dssp EEEECTTSCEEEE--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCCHHHHHHHH
T ss_pred EEEECCCCCccee--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecCCcHHHHHHHH
Q ss_pred hh-----------------------------------------hhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-
Q 037149 103 QR-----------------------------------------TQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRK- 140 (244)
Q Consensus 103 q~-----------------------------------------~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK- 140 (244)
+. .-..|+|-.|.+|+.++...|.++.+..-..+..-+
T Consensus 676 ~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~ 755 (803)
T 3qx3_A 676 VQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR 755 (803)
T ss_dssp HHTTCCSCHHHHHHHHCC-----------------------CCCCHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCchhhhhhhccccccccccccccccccccccccccchhHHhCCchhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHH
Q 037149 141 ---TQIMIEQVEDLRKKERQLGDI 161 (244)
Q Consensus 141 ---~ql~~e~i~~Lkkke~~L~ee 161 (244)
..+..+.++.+...-....+.
T Consensus 756 ~t~~dlW~~DLd~f~~~~~~~e~~ 779 (803)
T 3qx3_A 756 KSPSDLWKEDLAAFVEELDKVESQ 779 (803)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
No 93
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.01 E-value=1.4e+02 Score=18.52 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 037149 125 LEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINK 163 (244)
Q Consensus 125 LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~ 163 (244)
|++|....-.-|+.-|.+-=++++..|.+..+.|..|-.
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 555666666666666777778888888888777776643
No 94
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.84 E-value=1e+02 Score=21.46 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 037149 144 MIEQVEDLRKKERQLGDINKQLRIK 168 (244)
Q Consensus 144 ~~e~i~~Lkkke~~L~eeN~~L~~k 168 (244)
|.+.|+.++.....|.++|..|+.-
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777653
No 95
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.68 E-value=1.4e+02 Score=17.84 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 037149 115 GPLSVKELQNLEKQLEGALA 134 (244)
Q Consensus 115 ~~Ls~~EL~~LE~~Le~sL~ 134 (244)
+++|.+||-.||..|..--+
T Consensus 15 egfspeelaaleselqalek 34 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEK 34 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 35799999999877654333
No 96
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.89 E-value=1.7e+02 Score=18.53 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=10.0
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 037149 114 LGPLSVKELQNLEKQLEG 131 (244)
Q Consensus 114 L~~Ls~~EL~~LE~~Le~ 131 (244)
+.|++.+|....-.++..
T Consensus 17 ~rGY~~~EVD~FLd~v~~ 34 (57)
T 2wuj_A 17 FRGYDEDEVNEFLAQVRK 34 (57)
T ss_dssp TTEEEHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 346667766665444433
No 97
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.57 E-value=85 Score=19.65 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCCHHHHHHH
Q 037149 90 QEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNL 125 (244)
Q Consensus 90 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~L 125 (244)
.|+.+|..+|+.|++..-.-+ -.|..-|..+|+.+
T Consensus 6 EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHH
Confidence 567888888888877533110 01233466666654
No 98
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.57 E-value=1.3e+02 Score=17.14 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037149 149 EDLRKKERQLGDINKQLRIKL 169 (244)
Q Consensus 149 ~~Lkkke~~L~eeN~~L~~k~ 169 (244)
++|..|+..|..+|..|..++
T Consensus 3 nQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 444555555555555555444
No 99
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.06 E-value=2.1e+02 Score=21.07 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037149 116 PLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLET 171 (244)
Q Consensus 116 ~Ls~~EL~~LE~~Le~sL~~IR~rK~ql~~e~i~~Lkkke~~L~eeN~~L~~k~~~ 171 (244)
++|++|+..+-...+..-... ..-.+++.+++..+.++...|++.-..|...+..
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887755433210001 1112456666777777777776666666655543
Done!