BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037150
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 83/131 (63%), Gaps = 10/131 (7%)

Query: 10  IMDVQLYKFSPAQL--EVMYKKRREKEMFFFTQRDRKHQNGSRPNRVTGDSSGFWKATSG 67
           I ++ LYKF P  L  + ++    EKE +FF+ RDRK+ NGSRPNRV G  SG+WKAT  
Sbjct: 52  IAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPNRVAG--SGYWKATGT 106

Query: 68  DKEVKFNGEIIGFKKTLAFYKRTSNSTEKTNWIMHEFRAEDNPPPSKKHGIDMKLDWVLC 127
           DK +   G+ +G KK L FY   +    KTNWIMHE+R  +   PS+++G     DWVLC
Sbjct: 107 DKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE---PSRRNGSTKLDDWVLC 163

Query: 128 RIYHRGSKSKR 138
           RIY + S +++
Sbjct: 164 RIYKKQSSAQK 174


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 83/131 (63%), Gaps = 10/131 (7%)

Query: 10  IMDVQLYKFSPAQL--EVMYKKRREKEMFFFTQRDRKHQNGSRPNRVTGDSSGFWKATSG 67
           I ++ LYKF P  L  + ++    EKE +FF+ RDRK+ NGSRPNRV G  SG+WKAT  
Sbjct: 49  IAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPNRVAG--SGYWKATGT 103

Query: 68  DKEVKFNGEIIGFKKTLAFYKRTSNSTEKTNWIMHEFRAEDNPPPSKKHGIDMKLDWVLC 127
           DK +   G+ +G KK L FY   +    KTNWIMHE+R  +   PS+++G     DWVLC
Sbjct: 104 DKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE---PSRRNGSTKLDDWVLC 160

Query: 128 RIYHRGSKSKR 138
           RIY + S +++
Sbjct: 161 RIYKKQSSAQK 171


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 9/132 (6%)

Query: 5   LPPNRIMDVQLYKFSPAQL--EVMYKKRREKEMFFFTQRDRKHQNGSRPNRVTGDSSGFW 62
           LP   I +V LYKF P  L    ++  R   E +FFT RDRK+ NGSRPNR  G+  G+W
Sbjct: 42  LPVPIIAEVDLYKFDPWDLPERALFGAR---EWYFFTPRDRKYPNGSRPNRAAGN--GYW 96

Query: 63  KATSGDKEVKFNGEIIGFKKTLAFYKRTSNSTEKTNWIMHEFR-AEDNPPPSKKHGIDMK 121
           KAT  DK V   G  +G KK L FY   +    KT+WIMHE+R A+     +      ++
Sbjct: 97  KATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLR 156

Query: 122 L-DWVLCRIYHR 132
           L DWVLCR+Y++
Sbjct: 157 LDDWVLCRLYNK 168


>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
           Pfl2060c
          Length = 475

 Score = 32.0 bits (71), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 154 SVDQPIQLNPNINELVVISREYNNPSMEMEKPPSILPQEGQSFVEI-----SQSGNPMQN 208
           S    + L      +V  + E NNP  E+EKP  +L    + FV+I     S S  P  N
Sbjct: 367 SFQHGVTLKGKYIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADN 426

Query: 209 NAIATNTQYANPSHDNTLAND 229
             I   + Y   SH  T  ND
Sbjct: 427 --IFVTSSYDATSHFETATND 445


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,732,326
Number of Sequences: 62578
Number of extensions: 434822
Number of successful extensions: 672
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 7
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)