Query 037150
Match_columns 346
No_of_seqs 163 out of 920
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 8.5E-42 2.9E-46 306.1 12.7 132 1-135 38-171 (174)
2 1ut7_A No apical meristem prot 100.0 1.1E-41 3.7E-46 304.6 12.9 130 1-136 40-169 (171)
3 2oh5_A Polyhedrin, C-polyhedri 14.4 1.1E+02 0.0039 27.1 3.2 28 59-86 140-168 (248)
4 2h7a_A Hypothetical protein YC 4.5 2.9E+02 0.0098 22.7 1.3 14 123-136 12-25 (110)
5 1p4q_A CBP/P300-interacting tr 3.7 3.6E+02 0.012 19.2 1.1 6 336-341 33-38 (52)
6 3i9v_7 NADH-quinone oxidoreduc 3.6 8.8E+02 0.03 20.1 3.6 50 15-65 41-96 (129)
7 4dxy_A Cytochrome P450, CYP101 3.2 5.6E+02 0.019 24.1 2.4 10 58-67 60-69 (417)
8 3pp4_P B-lymphocyte antigen CD 3.1 4.3E+02 0.015 16.2 0.9 11 14-24 1-11 (25)
9 3nct_A Protein PSIB; DNA bindi 3.0 5.4E+02 0.019 21.9 1.8 26 96-132 43-69 (144)
10 1cmb_A Met APO-repressor; DNA- 2.8 4.9E+02 0.017 20.8 1.2 21 2-26 67-87 (104)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=8.5e-42 Score=306.14 Aligned_cols=132 Identities=42% Similarity=0.748 Sum_probs=109.3
Q ss_pred CCCCCCCCceeecCCCCCCccchhhHhhhCCCceEEEEeecCccCCCCCCCceeccCCCceeeeecCCceeeeCCeeeEE
Q 037150 1 MNEPLPPNRIMDVQLYKFSPAQLEVMYKKRREKEMFFFTQRDRKHQNGSRPNRVTGDSSGFWKATSGDKEVKFNGEIIGF 80 (346)
Q Consensus 1 mG~PLP~~iI~evDVY~~ePWdLP~~~~~~gd~eWYFFspr~rKy~nG~R~~Ratg~ggGyWKatG~~k~I~~~g~vIG~ 80 (346)
+|.|+|.++|+++|||++|||+||+. +..++++|||||++++||++|.|++|+| ++||||+||++++|...|.+||+
T Consensus 38 ~g~~~~~~~I~evDvy~~~Pw~Lp~~-~~~g~~ewYFFs~r~~ky~~g~R~nR~t--~~G~WkatG~dk~I~~~g~~vG~ 114 (174)
T 3ulx_A 38 AGQRLPVPIIAEVDLYKFDPWDLPER-ALFGAREWYFFTPRDRKYPNGSRPNRAA--GNGYWKATGADKPVAPRGRTLGI 114 (174)
T ss_dssp HTCCCSSSCCEECCGGGSCGGGSGGG-CSSCSSEEEEEEECCC-----CCSCEEE--TTEEEEECSCCEEECCSSSCCEE
T ss_pred cCCCCCcCeeeecccccCCchhhhhh-hccCCceEEEEeccccccCCCCCceeec--CCceEccCCCCcEEeeCCcEEEE
Confidence 37899999999999999999999998 6678899999999999999999999999 99999999999999988999999
Q ss_pred EEEEeeeeccCCCCCccCeEEEEeeeCCCCCCCC-CCCCCC-CcceEEEEEEEcCCC
Q 037150 81 KKTLAFYKRTSNSTEKTNWIMHEFRAEDNPPPSK-KHGIDM-KLDWVLCRIYHRGSK 135 (346)
Q Consensus 81 KKtLvFY~Gr~p~g~KT~WvMhEY~l~~~~~~~~-~~~~~~-~~d~VLCRIykK~~~ 135 (346)
||+||||.|+++++.||+|+||||+|........ ...+.+ .++|||||||+|+..
T Consensus 115 KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 115 KKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171 (174)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC-
T ss_pred EEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCCC
Confidence 9999999999999999999999999998764321 011223 359999999998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.1e-41 Score=304.60 Aligned_cols=130 Identities=45% Similarity=0.751 Sum_probs=107.1
Q ss_pred CCCCCCCCceeecCCCCCCccchhhHhhhCCCceEEEEeecCccCCCCCCCceeccCCCceeeeecCCceeeeCCeeeEE
Q 037150 1 MNEPLPPNRIMDVQLYKFSPAQLEVMYKKRREKEMFFFTQRDRKHQNGSRPNRVTGDSSGFWKATSGDKEVKFNGEIIGF 80 (346)
Q Consensus 1 mG~PLP~~iI~evDVY~~ePWdLP~~~~~~gd~eWYFFspr~rKy~nG~R~~Ratg~ggGyWKatG~~k~I~~~g~vIG~ 80 (346)
+|.|+|.++|+++|||++|||+||+. +..++++|||||++++||++|.|++|+| ++||||+||+++.|..++.+||+
T Consensus 40 ~g~~~~~~~I~e~Diy~~~Pw~Lp~~-~~~g~~ewyFFs~r~~k~~~g~R~~R~t--~~G~Wk~tG~~k~I~~~~~~vG~ 116 (171)
T 1ut7_A 40 AGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWYFFSPRDRKYPNGSRPNRVA--GSGYWKATGTDKIISTEGQRVGI 116 (171)
T ss_dssp TTCCCSSCCSEECCGGGSCGGGHHHH-SSSCSSEEEEEEECCC-------CCEEE--TTEEEEEEEEEEEEEETTEEEEE
T ss_pred cCCCCCCCeEeecccccCChhHhhch-hhcCCccEEEEeccccccCCCCcccccC--CCCEEeccCCCceEEecCcEEEE
Confidence 47899999999999999999999999 6778899999999999999999999999 99999999999999999999999
Q ss_pred EEEEeeeeccCCCCCccCeEEEEeeeCCCCCCCCCCCCCCCcceEEEEEEEcCCCC
Q 037150 81 KKTLAFYKRTSNSTEKTNWIMHEFRAEDNPPPSKKHGIDMKLDWVLCRIYHRGSKS 136 (346)
Q Consensus 81 KKtLvFY~Gr~p~g~KT~WvMhEY~l~~~~~~~~~~~~~~~~d~VLCRIykK~~~~ 136 (346)
||+|+||.|+++++.||+|+||||+|....... ......+|||||||+|+...
T Consensus 117 KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~---~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 117 KKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN---GSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEEEEEEEECC---
T ss_pred EEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc---CcccCCCEEEEEEEEcCCCC
Confidence 999999999999999999999999999875321 11234599999999998654
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=14.40 E-value=1.1e+02 Score=27.10 Aligned_cols=28 Identities=32% Similarity=0.653 Sum_probs=22.8
Q ss_pred Cceeeeec-CCceeeeCCeeeEEEEEEee
Q 037150 59 SGFWKATS-GDKEVKFNGEIIGFKKTLAF 86 (346)
Q Consensus 59 gGyWKatG-~~k~I~~~g~vIG~KKtLvF 86 (346)
.--|.+|| +-|.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 34699998 66888889999999887754
No 4
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=4.45 E-value=2.9e+02 Score=22.68 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.2
Q ss_pred ceEEEEEEEcCCCC
Q 037150 123 DWVLCRIYHRGSKS 136 (346)
Q Consensus 123 d~VLCRIykK~~~~ 136 (346)
...+|-||+++++.
T Consensus 12 ~~mlC~IYkS~KK~ 25 (110)
T 2h7a_A 12 KSMFCVIYRSSKRD 25 (110)
T ss_dssp CCCCEEEEEETTSS
T ss_pred ceEEEEEEecCCCC
Confidence 34799999998774
No 5
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=3.71 E-value=3.6e+02 Score=19.19 Aligned_cols=6 Identities=50% Similarity=0.944 Sum_probs=2.6
Q ss_pred CCCccc
Q 037150 336 MPTLPE 341 (346)
Q Consensus 336 ~~~~~~ 341 (346)
|++|||
T Consensus 33 v~ELPE 38 (52)
T 1p4q_A 33 IKELPE 38 (52)
T ss_dssp CSSCCC
T ss_pred HHHhHH
Confidence 344444
No 6
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=3.64 E-value=8.8e+02 Score=20.12 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCCCC-ccchhhHh---hh-CCCceEEEEeecCccCCCCCCCc-eeccCCCceeeee
Q 037150 15 LYKFS-PAQLEVMY---KK-RREKEMFFFTQRDRKHQNGSRPN-RVTGDSSGFWKAT 65 (346)
Q Consensus 15 VY~~e-PWdLP~~~---~~-~gd~eWYFFspr~rKy~nG~R~~-Ratg~ggGyWKat 65 (346)
||..| |||||..- .. .+.++=||+.-...+...-++.. |.-| +.-+||..
T Consensus 41 IYRMeRPydLPTtvMsvsLS~~~geP~l~a~vSprha~lK~islr~~g-~h~hwh~h 96 (129)
T 3i9v_7 41 IYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPR-AHIHLHAH 96 (129)
T ss_dssp HSCCSSCCCCSCSEEEEEEECSSSCEEEEEEECCSSSSSCCEEEEETT-TTEEEEEE
T ss_pred HHhhcCcccCCceeEEEEeccCCCCeeEEEecCcchhhhcceEEecCC-Ccceeeee
Confidence 67654 99999872 11 23356788875554433333333 3332 56689987
No 7
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=3.17 E-value=5.6e+02 Score=24.08 Aligned_cols=10 Identities=50% Similarity=1.096 Sum_probs=7.6
Q ss_pred CCceeeeecC
Q 037150 58 SSGFWKATSG 67 (346)
Q Consensus 58 ggGyWKatG~ 67 (346)
++|+|-.++-
T Consensus 60 ~gg~W~vtr~ 69 (417)
T 4dxy_A 60 TGGHWIATNG 69 (417)
T ss_dssp TTSEEEECSH
T ss_pred CCCEEEECCH
Confidence 6799987753
No 8
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=3.11 E-value=4.3e+02 Score=16.24 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=6.4
Q ss_pred CCCCCCccchh
Q 037150 14 QLYKFSPAQLE 24 (346)
Q Consensus 14 DVY~~ePWdLP 24 (346)
|||.|+|..-.
T Consensus 1 nIynCE~a~ps 11 (25)
T 3pp4_P 1 NIYNCEPANPS 11 (26)
T ss_dssp -CCCCSCSSGG
T ss_pred CccccccCCcc
Confidence 57777775443
No 9
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=3.02 E-value=5.4e+02 Score=21.92 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=18.1
Q ss_pred ccCeEEE-EeeeCCCCCCCCCCCCCCCcceEEEEEEEc
Q 037150 96 KTNWIMH-EFRAEDNPPPSKKHGIDMKLDWVLCRIYHR 132 (346)
Q Consensus 96 KT~WvMh-EY~l~~~~~~~~~~~~~~~~d~VLCRIykK 132 (346)
--+|.|. ||+..-...-. |.||+--+
T Consensus 43 P~gW~~naEy~~EFgGffP-----------Vq~RfsP~ 69 (144)
T 3nct_A 43 PDNWTMNGEYGSEFGGFFP-----------VQVRFTPA 69 (144)
T ss_dssp CTTEEEEECSSSTTCSCSS-----------SEEEEEET
T ss_pred CccceEeccccccccceee-----------EEEEEcCC
Confidence 3589985 88877665443 88887654
No 10
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=2.81 E-value=4.9e+02 Score=20.76 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.6
Q ss_pred CCCCCCCceeecCCCCCCccchhhH
Q 037150 2 NEPLPPNRIMDVQLYKFSPAQLEVM 26 (346)
Q Consensus 2 G~PLP~~iI~evDVY~~ePWdLP~~ 26 (346)
|+|||. +.|+-+..|.++|..
T Consensus 67 GQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 67 GQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCCCCC----GGGGBTTSCSCSCHH
T ss_pred CCCCCC----chhhhhcCCccchHH
Confidence 788885 578889999999977
Done!