Query 037152
Match_columns 75
No_of_seqs 110 out of 717
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.8 3.9E-19 1.3E-23 106.7 4.0 55 4-62 4-58 (63)
2 4gat_A Nitrogen regulatory pro 99.7 5.8E-19 2E-23 106.6 2.9 55 3-61 5-59 (66)
3 1gnf_A Transcription factor GA 99.7 3.1E-18 1.1E-22 97.2 4.4 39 6-45 3-41 (46)
4 2vut_I AREA, nitrogen regulato 99.7 1.7E-18 5.7E-23 97.1 2.9 37 8-45 2-38 (43)
5 2kae_A GATA-type transcription 99.6 1.3E-16 4.5E-21 97.5 3.1 41 4-44 5-45 (71)
6 4hc9_A Trans-acting T-cell-spe 99.6 6.4E-16 2.2E-20 101.2 3.5 52 5-60 57-108 (115)
7 4hc9_A Trans-acting T-cell-spe 99.5 2.2E-14 7.4E-19 93.9 4.3 40 4-44 2-41 (115)
8 1pft_A TFIIB, PFTFIIBN; N-term 90.9 0.1 3.4E-06 28.3 1.5 40 8-50 6-47 (50)
9 1dl6_A Transcription factor II 85.9 0.43 1.5E-05 27.0 2.0 41 7-50 11-53 (58)
10 3cw2_K Translation initiation 85.7 0.42 1.4E-05 31.6 2.1 30 8-38 104-133 (139)
11 2crr_A Stromal membrane-associ 84.8 1 3.5E-05 29.6 3.7 46 6-53 28-74 (141)
12 2d74_B Translation initiation 84.6 0.45 1.5E-05 31.9 1.9 31 8-39 105-135 (148)
13 3k7a_M Transcription initiatio 82.8 0.85 2.9E-05 33.1 2.9 35 7-42 21-55 (345)
14 1k81_A EIF-2-beta, probable tr 82.7 0.1 3.6E-06 27.2 -1.5 29 9-39 2-31 (36)
15 1nee_A EIF-2-beta, probable tr 81.8 0.44 1.5E-05 31.5 1.0 29 9-38 104-132 (138)
16 2iqj_A Stromal membrane-associ 78.9 0.74 2.5E-05 30.1 1.3 33 6-40 26-58 (134)
17 2g2k_A EIF-5, eukaryotic trans 78.7 0.29 1E-05 33.5 -0.7 32 9-40 98-130 (170)
18 2owa_A Arfgap-like finger doma 78.5 0.76 2.6E-05 30.3 1.3 46 6-53 35-81 (138)
19 2e9h_A EIF-5, eukaryotic trans 77.8 0.4 1.4E-05 32.4 -0.3 33 8-40 104-137 (157)
20 2b0o_E UPLC1; arfgap, structur 76.9 1 3.5E-05 31.2 1.7 29 6-36 41-69 (301)
21 2p57_A GTPase-activating prote 74.7 0.97 3.3E-05 30.1 1.0 45 6-52 36-81 (144)
22 2crw_A ARF GAP 3, ADP-ribosyla 74.6 1.6 5.5E-05 29.1 2.1 46 6-53 28-74 (149)
23 3dwd_A ADP-ribosylation factor 74.2 1.4 4.7E-05 29.5 1.7 45 6-52 37-82 (147)
24 2olm_A Nucleoporin-like protei 72.0 1.9 6.6E-05 28.3 1.9 33 6-40 24-56 (140)
25 1qyp_A RNA polymerase II; tran 70.4 0.52 1.8E-05 26.1 -1.0 35 7-41 15-55 (57)
26 4bbr_M Transcription initiatio 65.0 1.4 5E-05 32.2 0.2 34 7-41 21-54 (345)
27 3cng_A Nudix hydrolase; struct 63.5 1.9 6.4E-05 27.8 0.5 30 7-36 3-32 (189)
28 3sub_A ADP-ribosylation factor 61.4 3 0.0001 28.4 1.2 46 6-53 21-67 (163)
29 3k1f_M Transcription initiatio 60.9 2.5 8.4E-05 29.7 0.8 35 6-41 20-54 (197)
30 3lju_X ARF-GAP with dual PH do 59.0 3.7 0.00013 30.3 1.4 30 6-37 33-62 (386)
31 2zjr_Z 50S ribosomal protein L 57.0 3 0.0001 23.8 0.5 20 8-36 31-50 (60)
32 3o47_A ADP-ribosylation factor 56.9 4.1 0.00014 28.8 1.3 33 6-40 36-68 (329)
33 3v2d_5 50S ribosomal protein L 53.6 3.2 0.00011 23.7 0.3 20 8-36 31-50 (60)
34 3jue_A Arfgap with coiled-coil 51.7 6 0.00021 28.6 1.6 29 6-36 44-72 (368)
35 2yrk_A Zinc finger homeobox pr 50.4 4.7 0.00016 23.1 0.6 19 23-41 7-25 (55)
36 1tfi_A Transcriptional elongat 47.6 2.5 8.4E-05 23.2 -0.8 35 6-40 8-48 (50)
37 2yrc_A Protein transport prote 46.0 6.7 0.00023 22.2 0.8 37 4-40 6-44 (59)
38 2k1p_A Zinc finger RAN-binding 44.9 11 0.00038 18.7 1.5 25 5-37 4-28 (33)
39 1dcq_A PYK2-associated protein 43.3 11 0.00036 25.6 1.7 29 6-36 16-44 (278)
40 3po3_S Transcription elongatio 42.9 5.6 0.00019 26.8 0.2 34 7-40 137-176 (178)
41 1dx8_A Rubredoxin; electron tr 40.4 15 0.0005 21.4 1.7 36 1-38 1-49 (70)
42 3lvq_E ARF-GAP with SH3 domain 39.8 12 0.0004 27.4 1.6 29 6-36 22-50 (497)
43 1pqv_S STP-alpha, transcriptio 38.3 6.5 0.00022 28.4 -0.0 34 7-40 268-307 (309)
44 1twf_L ABC10-alpha, DNA-direct 38.2 8.2 0.00028 22.6 0.4 25 8-37 29-53 (70)
45 2ds5_A CLPX, ATP-dependent CLP 37.5 18 0.00061 19.9 1.7 31 6-38 10-42 (51)
46 3lpe_B DNA-directed RNA polyme 36.0 7.9 0.00027 22.0 0.1 14 9-22 15-28 (59)
47 3mhs_E SAGA-associated factor 34.3 7.2 0.00025 24.5 -0.3 11 30-40 76-86 (96)
48 1vk6_A NADH pyrophosphatase; 1 33.4 8.7 0.0003 26.9 -0.1 30 6-39 106-135 (269)
49 2kdx_A HYPA, hydrogenase/ureas 33.3 8.8 0.0003 23.7 -0.0 27 6-38 72-99 (119)
50 1nui_A DNA primase/helicase; z 33.3 12 0.0004 25.5 0.6 30 6-38 13-42 (255)
51 3h0g_L DNA-directed RNA polyme 32.5 17 0.0006 20.9 1.2 29 6-39 20-48 (63)
52 1ovx_A ATP-dependent CLP prote 32.2 21 0.00072 20.8 1.5 31 7-39 18-50 (67)
53 1pcx_A Protein transport prote 31.9 16 0.00055 29.6 1.3 34 7-40 112-145 (810)
54 1m2v_B SEC24, protein transpor 29.7 19 0.00064 29.9 1.3 34 7-40 228-261 (926)
55 3efo_B SEC24 related gene fami 29.5 16 0.00056 29.4 0.9 35 6-40 97-131 (770)
56 2kgo_A Uncharacterized protein 28.2 63 0.0022 20.3 3.4 47 6-53 55-102 (108)
57 2lk0_A RNA-binding protein 5; 28.1 11 0.00038 18.6 -0.2 24 6-37 4-27 (32)
58 2lo3_A SAGA-associated factor 27.9 12 0.00043 20.3 -0.0 11 30-40 18-28 (44)
59 3j20_Y 30S ribosomal protein S 27.6 9 0.00031 20.9 -0.6 30 6-39 18-47 (50)
60 1lko_A Rubrerythrin all-iron(I 26.0 11 0.00037 25.2 -0.6 26 7-38 155-180 (191)
61 3eh2_A Protein transport prote 26.0 25 0.00086 28.3 1.4 35 6-40 93-127 (766)
62 3bvo_A CO-chaperone protein HS 25.0 39 0.0013 22.9 2.1 29 6-39 9-37 (207)
63 1twf_I B12.6, DNA-directed RNA 24.8 12 0.00041 23.5 -0.5 36 7-42 72-113 (122)
64 2lcq_A Putative toxin VAPC6; P 24.7 25 0.00084 22.5 1.0 29 6-40 131-159 (165)
65 1twf_J DNA-directed RNA polyme 23.7 34 0.0012 20.2 1.4 19 4-22 1-19 (70)
66 2lvu_A Zinc finger and BTB dom 29.4 17 0.00057 14.8 0.0 13 30-42 3-15 (26)
67 3pwf_A Rubrerythrin; non heme 22.5 20 0.00068 23.7 0.2 24 7-37 138-161 (170)
68 2apo_B Ribosome biogenesis pro 22.2 31 0.0011 19.6 1.0 25 6-40 5-29 (60)
69 3eh1_A Protein transport prote 22.1 35 0.0012 27.5 1.6 33 7-40 85-117 (751)
70 1zbd_B Rabphilin-3A; G protein 22.0 24 0.00081 22.7 0.5 25 8-36 81-105 (134)
71 1yk4_A Rubredoxin, RD; electro 21.6 28 0.00097 19.0 0.7 28 8-37 3-43 (52)
72 2fiy_A Protein FDHE homolog; F 21.5 10 0.00036 27.6 -1.5 37 6-42 181-221 (309)
73 2cot_A Zinc finger protein 435 21.5 35 0.0012 18.0 1.0 21 19-40 9-29 (77)
74 1d4u_A Nucleotide excision rep 20.5 48 0.0016 20.9 1.7 30 8-39 6-36 (111)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.76 E-value=3.9e-19 Score=106.65 Aligned_cols=55 Identities=29% Similarity=0.619 Sum_probs=44.6
Q ss_pred cccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCCCcccccc
Q 037152 4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHS 62 (75)
Q Consensus 4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~~s 62 (75)
......|++|++++||+||+||+|. +|||||||+|++++. .+|....++..+++.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~~~~~~i~~R~ 58 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLTMKKEGIQTRN 58 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGGGCCSSCCCCC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcCcCCCcccccc
Confidence 3467899999999999999999996 999999999998774 566666655554443
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.74 E-value=5.8e-19 Score=106.63 Aligned_cols=55 Identities=36% Similarity=0.638 Sum_probs=45.3
Q ss_pred ccccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCCCccccc
Q 037152 3 EELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIH 61 (75)
Q Consensus 3 ~~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~~ 61 (75)
+......|++|++++||+||+||+|. +|||||||+|++++. .+|.+..++.++++
T Consensus 5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~---~RP~~~k~~~ik~R 59 (66)
T 4gat_A 5 EQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV---VRPLSLKTDVIKKR 59 (66)
T ss_dssp CSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS---CCCGGGCCSCCCCC
T ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC---CCchhhcccccccc
Confidence 45678999999999999999999995 999999999998664 56666666555544
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.73 E-value=3.1e-18 Score=97.19 Aligned_cols=39 Identities=38% Similarity=0.722 Sum_probs=35.4
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLL 45 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~ 45 (75)
....|++|++++||+||+||+|. +|||||||+|++++.+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 56789999999999999999995 9999999999987743
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.72 E-value=1.7e-18 Score=97.09 Aligned_cols=37 Identities=43% Similarity=0.929 Sum_probs=33.9
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCC
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLL 45 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~ 45 (75)
..|++|++++||+||+||+|. +|||||||+|++++.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999999999999999996 9999999999987643
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.62 E-value=1.3e-16 Score=97.51 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=32.4
Q ss_pred cccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC
Q 037152 4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL 44 (75)
Q Consensus 4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~ 44 (75)
......|+||+|++||+||+|+.+..+|||||||+|++++.
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK 45 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC
Confidence 45678999999999999999544434999999999998653
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.58 E-value=6.4e-16 Score=101.15 Aligned_cols=52 Identities=31% Similarity=0.650 Sum_probs=42.8
Q ss_pred ccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCCCcccc
Q 037152 5 LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHI 60 (75)
Q Consensus 5 ~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~ 60 (75)
.....|++|++++||+||+||+| .+|||||||||++++. .+|.+..++.++.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~---~rp~~~~~~~i~~ 108 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI---NRPLTMKKEGIQT 108 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS---CCCGGGCCSSCCC
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC---CCCccccccchhh
Confidence 45689999999999999999999 8999999999998764 3666666555444
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.48 E-value=2.2e-14 Score=93.88 Aligned_cols=40 Identities=38% Similarity=0.749 Sum_probs=33.2
Q ss_pred cccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC
Q 037152 4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL 44 (75)
Q Consensus 4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~ 44 (75)
+...++|+||++++||+||+|++| .+|||||||||+.++.
T Consensus 2 ~~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 2 SHMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQ 41 (115)
T ss_dssp ----CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccc
Confidence 346789999999999999999999 7999999999987543
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=90.91 E-value=0.1 Score=28.27 Aligned_cols=40 Identities=25% Similarity=0.562 Sum_probs=26.1
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC--CCCCCC
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL--LPEYRP 50 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~--~p~~~~ 50 (75)
..|.+|+.+ ++-.+...| ..+|..||+-|..... -|+||.
T Consensus 6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 6 KVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred EeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 469999873 333333445 6899999998875443 255553
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.86 E-value=0.43 Score=26.96 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhhhhhCC--CCCCCCC
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGR--LLPEYRP 50 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~--~~p~~~~ 50 (75)
...|..|+... .-.....| .++|..||+-+..+. .-|+||.
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~ 53 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT 53 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccc
Confidence 34799998754 44455566 689999999987543 3466764
No 10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=85.68 E-value=0.42 Score=31.61 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=19.6
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVR 38 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~ 38 (75)
-.|..|+.++|-+=+++..- -.-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 46999999999998864222 2459999964
No 11
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.83 E-value=1 Score=29.64 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=32.0
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAAS 53 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~~ 53 (75)
....|++|++. .|.|-.-..| ..||-.|.-..+. +..+...+..+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~l 74 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNL 74 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSS
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCC
Confidence 45789999986 5999999899 7899999544443 333344444433
No 12
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=84.58 E-value=0.45 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=22.8
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~ 39 (75)
-.|..|+.++|-+=+++..- -.-|+|||-.-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence 36999999999998864222 23599999653
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=82.76 E-value=0.85 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhhhhhC
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSG 42 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~ 42 (75)
...|.+|+...+..-.+-..| .++|..||+=+..+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccc
Confidence 557999998753343455567 78999999877643
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=82.66 E-value=0.1 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=21.1
Q ss_pred cccccCccCCCCcccCCCCCcc-cChhhhhhh
Q 037152 9 KCSHCETRHTPQWRVGPLGPKT-LCNACGVRY 39 (75)
Q Consensus 9 ~C~~C~t~~Tp~WR~gp~G~~~-LCNaCGl~~ 39 (75)
.|..|+..+|-+=+++ +.-. -|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~--~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEG--RVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEET--TEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeC--CcEEEEhhcCCCcc
Confidence 4899999999887754 3223 499999653
No 15
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=81.79 E-value=0.44 Score=31.46 Aligned_cols=29 Identities=31% Similarity=0.702 Sum_probs=21.7
Q ss_pred cccccCccCCCCcccCCCCCcccChhhhhh
Q 037152 9 KCSHCETRHTPQWRVGPLGPKTLCNACGVR 38 (75)
Q Consensus 9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~ 38 (75)
.|..|+.++|-+=+++..- -.-|+|||-.
T Consensus 104 lC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred ECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence 5999999999998864222 2359999954
No 16
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=78.85 E-value=0.74 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.646 Sum_probs=26.7
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
....|.+|++.. |.|-.-..| ..+|-.|.-..+
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR 58 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHR 58 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHh
Confidence 467899999874 999999999 789999954333
No 17
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=78.73 E-value=0.29 Score=33.52 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=22.9
Q ss_pred cccccCccCCCCcccCCCCCc-ccChhhhhhhh
Q 037152 9 KCSHCETRHTPQWRVGPLGPK-TLCNACGVRYK 40 (75)
Q Consensus 9 ~C~~C~t~~Tp~WR~gp~G~~-~LCNaCGl~~~ 40 (75)
.|..|+..+|-+-+....+.- .-|+|||-.-.
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 599999999998884333322 34999996543
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=78.55 E-value=0.76 Score=30.28 Aligned_cols=46 Identities=24% Similarity=0.529 Sum_probs=32.6
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAAS 53 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~~ 53 (75)
....|.+|++.. |.|-.-..| ..+|-.|.-..+. +..+...++.+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~l 81 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDL 81 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTT
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCc
Confidence 467899999865 999999999 7899999765554 323334444433
No 19
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.84 E-value=0.4 Score=32.44 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=22.9
Q ss_pred CcccccCccCCCCcccCCCCCc-ccChhhhhhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPK-TLCNACGVRYK 40 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~-~LCNaCGl~~~ 40 (75)
-.|..|+..+|-+-+....+-- .-|+|||-.-.
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 3699999999998873223322 34999996543
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=76.91 E-value=1 Score=31.19 Aligned_cols=29 Identities=28% Similarity=0.740 Sum_probs=25.3
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
....|..|++.. |.|-.-..| ..+|-.|.
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs 69 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCS 69 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHH
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHH
Confidence 468999999965 999999999 78999994
No 21
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=74.66 E-value=0.97 Score=30.13 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=32.4
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAA 52 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~ 52 (75)
....|.+|++. .|.|-.-..| ..+|-.|.-..+. +..+...+..+
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~ 81 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTE 81 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESS
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecc
Confidence 46789999986 5999998889 7899999665554 33344444433
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.59 E-value=1.6 Score=29.09 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=33.1
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAAS 53 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~~ 53 (75)
....|.+|++. .|.|-.-..| ..+|-.|.-..+. +..+...+..+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~L 74 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTEL 74 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSS
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeecccc
Confidence 46899999975 6999999899 7899999655554 434444554443
No 23
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=74.24 E-value=1.4 Score=29.55 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=31.8
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAA 52 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~ 52 (75)
....|.+|++.. |.|-.-..| ..||-.|.-.-+. +..+...++.+
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~ 82 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVT 82 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESC
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCcccccc
Confidence 467899999874 999999889 7899999654443 33333444433
No 24
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=72.01 E-value=1.9 Score=28.26 Aligned_cols=33 Identities=27% Similarity=0.718 Sum_probs=27.0
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
....|.+|++. .|.|-.-..| ..||-.|.--.+
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR 56 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLR 56 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHT
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhc
Confidence 46789999985 6999999899 789999965444
No 25
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=70.41 E-value=0.52 Score=26.09 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=25.3
Q ss_pred CCcccccCccCC----CCcccCCCCCc--ccChhhhhhhhh
Q 037152 7 QRKCSHCETRHT----PQWRVGPLGPK--TLCNACGVRYKS 41 (75)
Q Consensus 7 ~~~C~~C~t~~T----p~WR~gp~G~~--~LCNaCGl~~~~ 41 (75)
...|..|+-... -+||..+++.. +.|..||-.|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 467999998443 47888877732 479999988763
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=64.95 E-value=1.4 Score=32.17 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhhhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS 41 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~ 41 (75)
...|..|+...+-.--+-..| .++|..||+=+..
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~e 54 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSD 54 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEEES
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCCccC
Confidence 347999997544444444566 7899999977654
No 27
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=63.45 E-value=1.9 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=24.7
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
.+.|..||+..+...-+|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 578999999988777677777667899998
No 28
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=61.41 E-value=3 Score=28.37 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=32.2
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAAS 53 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~~ 53 (75)
....|+.|++. .|.|-.-..| ..||-.|.-..+. +..+...++.+.
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~hISkVKSltL 67 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGVHISIVRSIKM 67 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTCTTTCCEEETTT
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCCCCCeeeeccc
Confidence 36789999986 6999999889 7899999644443 333344444443
No 29
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=60.89 E-value=2.5 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=24.3
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS 41 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~ 41 (75)
....|..|+...+..--+-..| .++|..||+=+..
T Consensus 20 ~~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVLEE 54 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSD 54 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBCCC
T ss_pred cCeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCcCC
Confidence 3457999998654444444456 7899999987653
No 30
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=59.00 E-value=3.7 Score=30.25 Aligned_cols=30 Identities=27% Similarity=0.746 Sum_probs=25.6
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGV 37 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl 37 (75)
....|++|++. .|.|-.-..| ..||-.|.-
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg 62 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLG-VFICLSCSG 62 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTT-EEECHHHHH
T ss_pred CCCcCccCCCC-CCCeEEeccc-EEEhhhhch
Confidence 45689999997 7999999899 789999963
No 31
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=57.00 E-value=3 Score=23.82 Aligned_cols=20 Identities=25% Similarity=0.979 Sum_probs=13.5
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
-.|.+||...-| +.+|..||
T Consensus 31 ~~c~~cG~~~~p---------H~vc~~CG 50 (60)
T 2zjr_Z 31 TECPQCHGKKLS---------HHICPNCG 50 (60)
T ss_dssp EECTTTCCEECT---------TBCCTTTC
T ss_pred eECCCCCCEeCC---------ceEcCCCC
Confidence 357777765332 67899999
No 32
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=56.87 E-value=4.1 Score=28.80 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=26.7
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
....|..|++. .|.|-.-..| ..+|-.|.--.+
T Consensus 36 ~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr 68 (329)
T 3o47_A 36 ENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHR 68 (329)
T ss_dssp TTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHH
T ss_pred CCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhc
Confidence 46789999985 5799998889 789999964444
No 33
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=53.62 E-value=3.2 Score=23.69 Aligned_cols=20 Identities=35% Similarity=1.052 Sum_probs=13.2
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
-.|.+||...-| +.+|..||
T Consensus 31 ~~c~~cGe~~~~---------H~vc~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMKPP---------HTVCPECG 50 (60)
T ss_dssp EECTTTCCEECT---------TSCCTTTC
T ss_pred eECCCCCCeecc---------eEEcCCCC
Confidence 456777664332 57888888
No 34
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=51.68 E-value=6 Score=28.57 Aligned_cols=29 Identities=34% Similarity=0.843 Sum_probs=25.1
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
....|..|++. .|.|-.-..| ..+|-.|.
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~ 72 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCS 72 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHH
Confidence 46789999985 6999999999 78999994
No 35
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=50.44 E-value=4.7 Score=23.06 Aligned_cols=19 Identities=42% Similarity=0.887 Sum_probs=15.8
Q ss_pred cCCCCCcccChhhhhhhhh
Q 037152 23 VGPLGPKTLCNACGVRYKS 41 (75)
Q Consensus 23 ~gp~G~~~LCNaCGl~~~~ 41 (75)
.+|+|+.+-|.-||..|..
T Consensus 7 ~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCccccccCccccc
Confidence 5778888899999998864
No 36
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=47.56 E-value=2.5 Score=23.19 Aligned_cols=35 Identities=29% Similarity=0.571 Sum_probs=24.3
Q ss_pred cCCcccccCccCCC----CcccCCCCCc--ccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTP----QWRVGPLGPK--TLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp----~WR~gp~G~~--~LCNaCGl~~~ 40 (75)
....|..|+-.+.- +=|+++++.. +.|..||-.|+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 34679999976643 3377777732 36999998765
No 37
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=45.99 E-value=6.7 Score=22.16 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred cccCCcccc--cCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 4 ELWQRKCSH--CETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 4 ~~~~~~C~~--C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
.....+|.. |++---|-++=...|....||-|+....
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~ 44 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQ 44 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEE
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCC
Confidence 345678988 9999999998888787889999987654
No 38
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=44.91 E-value=11 Score=18.72 Aligned_cols=25 Identities=20% Similarity=0.599 Sum_probs=15.3
Q ss_pred ccCCcccccCccCCCCcccCCCCCcccChhhhh
Q 037152 5 LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGV 37 (75)
Q Consensus 5 ~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl 37 (75)
.-++.|..|+...-+. ...||.|+.
T Consensus 4 ~gDW~C~~C~~~Nfa~--------R~~C~~C~~ 28 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWAR--------RSECNMCNT 28 (33)
T ss_dssp SSSCBCSSSCCBCCTT--------CSBCSSSCC
T ss_pred CCCcccCCCCCccccc--------cccccccCC
Confidence 3577888887654331 356777764
No 39
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=43.27 E-value=11 Score=25.61 Aligned_cols=29 Identities=28% Similarity=0.697 Sum_probs=24.7
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
....|..||+.. |.|-.-..| ..+|-.|.
T Consensus 16 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~ 44 (278)
T 1dcq_A 16 GNDVCCDCGAPD-PTWLSTNLG-ILTCIECS 44 (278)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHH
T ss_pred CCCcCCCCCCCC-CCeEEecCC-eEEcHHHH
Confidence 467899999985 699999899 78999993
No 40
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=42.92 E-value=5.6 Score=26.77 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=22.9
Q ss_pred CCcccccCccCC---CC-cccCCCCCc--ccChhhhhhhh
Q 037152 7 QRKCSHCETRHT---PQ-WRVGPLGPK--TLCNACGVRYK 40 (75)
Q Consensus 7 ~~~C~~C~t~~T---p~-WR~gp~G~~--~LCNaCGl~~~ 40 (75)
...|..|+-... .. =|.++++-. +.|..||-.|+
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 347999997653 22 266666632 46999998875
No 41
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.37 E-value=15 Score=21.42 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=24.1
Q ss_pred CcccccCCcccccCccCCCC-------------cccCCCCCcccChhhhhh
Q 037152 1 MNEELWQRKCSHCETRHTPQ-------------WRVGPLGPKTLCNACGVR 38 (75)
Q Consensus 1 ~~~~~~~~~C~~C~t~~Tp~-------------WR~gp~G~~~LCNaCGl~ 38 (75)
|...+...+|..||-.-.+. |..-|+. ..|-.||..
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPdd--w~CP~Cga~ 49 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDS--FMCPACRSP 49 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTT--CBCTTTCCB
T ss_pred CCCCCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCC--CcCCCCCCC
Confidence 33445678899999766553 4555553 588888864
No 42
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=39.84 E-value=12 Score=27.43 Aligned_cols=29 Identities=28% Similarity=0.733 Sum_probs=24.5
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
....|..|++ ..|.|-.-..| -.+|-.|.
T Consensus 22 ~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~ 50 (497)
T 3lvq_E 22 GNSQCCDCGA-ADPTWLSTNLG-VLTCIQCS 50 (497)
T ss_dssp TTTBCTTTCC-BSCCEEETTTT-EEECHHHH
T ss_pred CCCcccCCCC-CCCCEEEechh-HHhHHhhH
Confidence 4678999996 56899998888 78999994
No 43
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=38.28 E-value=6.5 Score=28.41 Aligned_cols=34 Identities=26% Similarity=0.661 Sum_probs=24.2
Q ss_pred CCcccccCccCCCCc----ccCCCCCc--ccChhhhhhhh
Q 037152 7 QRKCSHCETRHTPQW----RVGPLGPK--TLCNACGVRYK 40 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~W----R~gp~G~~--~LCNaCGl~~~ 40 (75)
...|..|+-...--| |.++++-. +.|..||-.|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 347999997765433 66777643 46999998875
No 44
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.17 E-value=8.2 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=15.7
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACGV 37 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl 37 (75)
-.|.+||...... .+...-|..||-
T Consensus 29 Y~C~~CG~~~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCC-----TTSTTCCSSSCC
T ss_pred EECCCCCCcceeC-----CCCCccCCCCCc
Confidence 4688888775443 122346888886
No 45
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=37.54 E-value=18 Score=19.89 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=20.9
Q ss_pred cCCcccccCccCCCC--cccCCCCCcccChhhhhh
Q 037152 6 WQRKCSHCETRHTPQ--WRVGPLGPKTLCNACGVR 38 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~--WR~gp~G~~~LCNaCGl~ 38 (75)
....|+-||-++... .=.|| | .++|+.|-..
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 346899999877543 23354 3 5899999644
No 46
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=36.02 E-value=7.9 Score=22.03 Aligned_cols=14 Identities=21% Similarity=0.793 Sum_probs=12.1
Q ss_pred cccccCccCCCCcc
Q 037152 9 KCSHCETRHTPQWR 22 (75)
Q Consensus 9 ~C~~C~t~~Tp~WR 22 (75)
.|.||+..+|+.|.
T Consensus 15 ~CpnC~~~tt~~~~ 28 (59)
T 3lpe_B 15 ICPICHSPTSENWI 28 (59)
T ss_dssp BCTTTCCBEESCEE
T ss_pred CCCCCCCCccCCEe
Confidence 59999988888885
No 47
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=34.33 E-value=7.2 Score=24.50 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.8
Q ss_pred ccChhhhhhhh
Q 037152 30 TLCNACGVRYK 40 (75)
Q Consensus 30 ~LCNaCGl~~~ 40 (75)
.+||+||..+.
T Consensus 76 RvCn~CGkPI~ 86 (96)
T 3mhs_E 76 RVCEKCGKPLA 86 (96)
T ss_dssp EEETTTCCEEC
T ss_pred hhhhccCCcee
Confidence 48999997664
No 48
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=33.42 E-value=8.7 Score=26.94 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=21.1
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~ 39 (75)
..+.|..||+.... ...|....|.+||..+
T Consensus 106 ~~~fC~~CG~~~~~----~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 106 SHKYCGYCGHEMYP----SKTEWAMLCSHCRERY 135 (269)
T ss_dssp TTSBCTTTCCBEEE----CSSSSCEEESSSSCEE
T ss_pred cCCccccCCCcCcc----CCCceeeeCCCCCCEe
Confidence 35789999987654 2455567899998654
No 49
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.35 E-value=8.8 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.620 Sum_probs=17.4
Q ss_pred cCCcccccCccCCCCcccCCCCCcc-cChhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKT-LCNACGVR 38 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~-LCNaCGl~ 38 (75)
....|.+||..-+.. .... .|-.||-.
T Consensus 72 ~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 456788888775541 2245 78888755
No 50
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=33.34 E-value=12 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=20.9
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVR 38 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~ 38 (75)
....|-.||.+.. .|-. .+| ...|+.||..
T Consensus 13 ~~~~CP~Cg~~d~-~~~~-~dg-~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDG-NSLF-SDG-HTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSC-EEEE-TTS-CEEETTTCCE
T ss_pred cCCcCCCCCCCCC-ceEe-CCC-CeecccCCCc
Confidence 3678999998753 4423 345 5799999954
No 51
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.49 E-value=17 Score=20.89 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=19.7
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~ 39 (75)
..-.|..|++..+.. .+...-|..||-++
T Consensus 20 v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ-----AKEVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCC-----SSSCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecC-----CCCceECCCCCcEE
Confidence 345799999887744 23245799998554
No 52
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=32.21 E-value=21 Score=20.84 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCcccccCccCCCC--cccCCCCCcccChhhhhhh
Q 037152 7 QRKCSHCETRHTPQ--WRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~--WR~gp~G~~~LCNaCGl~~ 39 (75)
...|+-||-++... .=.|| | .++|+.|-..-
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 35799999877533 33455 3 58999996544
No 53
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=31.88 E-value=16 Score=29.57 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.2
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
.-+|..|++--.|-.+-...|....||-|+....
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~ 145 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLAND 145 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEE
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCC
Confidence 5689999999999877777787899999987643
No 54
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=29.74 E-value=19 Score=29.91 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.4
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
.-+|..|++--.|-.+-...|....||-|+....
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~ 261 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLAND 261 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEE
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCC
Confidence 5689999999999877777787899999987643
No 55
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=29.49 E-value=16 Score=29.43 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=29.0
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
..-+|..|++--.|-.+=...|....||-|+....
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~ 131 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVND 131 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEE
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCC
Confidence 35699999999999877777777899999987654
No 56
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=28.19 E-value=63 Score=20.25 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=31.8
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCCC
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAAS 53 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~~ 53 (75)
.-..|..||.......+..--+ ..+|-.|--.+.+ .+....|..-.+
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~-a~~Cv~Cq~~~E~~~k~~~~~nRrgs 102 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPG-VRLCIHCQQEKDLQKPAYTGYNRRGS 102 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTT-CCSCHHHHHHHHHHCCSCCCCCCCCC
T ss_pred cCceecccCCcccHHHHhcCCC-ccccHHHHHHHHHHHHhhcccCCccc
Confidence 3578999999988777665555 5799999877764 333444443333
No 57
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=28.09 E-value=11 Score=18.57 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=12.8
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGV 37 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl 37 (75)
.++.|..|+...-+. ...|+.||.
T Consensus 4 gDW~C~~C~~~Nfa~--------r~~C~~C~~ 27 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRK--------RLKCFRCGA 27 (32)
T ss_dssp SEEECTTTCCEEETT--------CCBCTTTCC
T ss_pred CCCCcCcCcCCcChh--------cceecCCCC
Confidence 456677776543221 346666664
No 58
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=27.91 E-value=12 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.4
Q ss_pred ccChhhhhhhh
Q 037152 30 TLCNACGVRYK 40 (75)
Q Consensus 30 ~LCNaCGl~~~ 40 (75)
.+||+||..+.
T Consensus 18 RvC~~CgkPi~ 28 (44)
T 2lo3_A 18 RVCEKCGKPLA 28 (44)
T ss_dssp EECTTTCCEEE
T ss_pred hhhcccCCcch
Confidence 48999996543
No 59
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.59 E-value=9 Score=20.86 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=19.6
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~ 39 (75)
+-+.|..||+.. .+.. .+....|..||.-+
T Consensus 18 ~~k~CP~CG~~~--fm~~--~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGV--FMAD--HGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSC--EEEE--CSSEEECSSSCCEE
T ss_pred ecccCCCCCCce--EEec--CCCeEECCCCCCEE
Confidence 567899998843 2222 23367899999643
No 60
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.04 E-value=11 Score=25.19 Aligned_cols=26 Identities=35% Similarity=0.823 Sum_probs=16.6
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVR 38 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~ 38 (75)
.+.|.+||-..+ |..-+ ..|-.||..
T Consensus 155 ~~~C~~CG~~~~-----g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHE-----GTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEE-----EEECC-SBCTTTCCB
T ss_pred eEEECCCCCEee-----CCCCC-CCCCCCcCC
Confidence 578999987654 32222 278888753
No 61
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=25.99 E-value=25 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=28.2
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
..-+|..|++---|-.+=...|....||-|+....
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~ 127 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCIND 127 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEE
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCC
Confidence 45799999999999776666677899999987644
No 62
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.95 E-value=39 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=18.3
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~ 39 (75)
....|.+|+....+ ..+...+|..|+...
T Consensus 9 ~~~~Cw~C~~~~~~-----~~~~~~fC~~c~~~q 37 (207)
T 3bvo_A 9 NYPRCWNCGGPWGP-----GREDRFFCPQCRALQ 37 (207)
T ss_dssp --CBCSSSCCBCCS-----SCSCCCBCTTTCCBC
T ss_pred CCCCCCCCCCCccc-----ccccccccccccccC
Confidence 45689999866432 233467899998644
No 63
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=24.82 E-value=12 Score=23.48 Aligned_cols=36 Identities=25% Similarity=0.525 Sum_probs=25.3
Q ss_pred CCcccccCccCCC----CcccCCCCCc--ccChhhhhhhhhC
Q 037152 7 QRKCSHCETRHTP----QWRVGPLGPK--TLCNACGVRYKSG 42 (75)
Q Consensus 7 ~~~C~~C~t~~Tp----~WR~gp~G~~--~LCNaCGl~~~~~ 42 (75)
...|..|+-...- +=|.++++.. +.|..||-.|+..
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 4679999976543 3377777742 3699999998753
No 64
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=24.74 E-value=25 Score=22.47 Aligned_cols=29 Identities=28% Similarity=0.820 Sum_probs=19.3
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
..-.|..||...... .+...|-.||-.++
T Consensus 131 ~~y~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp CCEEESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred EEEECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 456788998755432 22458999987654
No 65
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=23.69 E-value=34 Score=20.16 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=16.3
Q ss_pred cccCCcccccCccCCCCcc
Q 037152 4 ELWQRKCSHCETRHTPQWR 22 (75)
Q Consensus 4 ~~~~~~C~~C~t~~Tp~WR 22 (75)
|+++-+|..||......|-
T Consensus 1 MiiPVRCFTCGkvi~~~we 19 (70)
T 1twf_J 1 MIVPVRCFSCGKVVGDKWE 19 (70)
T ss_dssp CCCCSBCTTTCCBCTTCHH
T ss_pred CCCCeecCCCCCChHHHHH
Confidence 4678899999999999884
No 66
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.45 E-value=17 Score=14.84 Aligned_cols=13 Identities=31% Similarity=0.943 Sum_probs=9.5
Q ss_pred ccChhhhhhhhhC
Q 037152 30 TLCNACGVRYKSG 42 (75)
Q Consensus 30 ~LCNaCGl~~~~~ 42 (75)
+.|+.||..+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5688898877653
No 67
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.53 E-value=20 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=14.3
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGV 37 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl 37 (75)
.+.|.+||-.... ..| ..|-.||-
T Consensus 138 ~~~C~~CG~i~~~---~~p----~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD---EAP----EYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES---CCC----SBCTTTCC
T ss_pred eeEeCCCCCeeCC---CCC----CCCCCCCC
Confidence 4678888866541 111 27777774
No 68
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.24 E-value=31 Score=19.65 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=15.5
Q ss_pred cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
.-+.|.+|++-+. ...|-.||....
T Consensus 5 ~mr~C~~CgvYTL----------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGLYTL----------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCCEES----------SSBCSSSCSBCB
T ss_pred hceeCCCCCCEec----------cccCcCCCCcCC
Confidence 3457888876554 246777775544
No 69
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=22.09 E-value=35 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152 7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~ 40 (75)
.-+|..|++--.|-.+- -+|....||-|+....
T Consensus 85 p~RC~rCrayiNPf~~f-~~~~~w~Cn~C~~~N~ 117 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSF-IDQRRWKCNLCYRVND 117 (751)
T ss_dssp CCBCTTTCCBCCTTCEE-SSSSEEECTTTCCEEE
T ss_pred CCcccCccCEeCCceEE-ecCCEEEcccccCCCC
Confidence 47899999999887554 2355789999986543
No 70
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.01 E-value=24 Score=22.68 Aligned_cols=25 Identities=24% Similarity=0.593 Sum_probs=13.2
Q ss_pred CcccccCccCCCCcccCCCCCcccChhhh
Q 037152 8 RKCSHCETRHTPQWRVGPLGPKTLCNACG 36 (75)
Q Consensus 8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG 36 (75)
.+|..|++..+. ++.....+|+.|-
T Consensus 81 ~VC~~C~~~~~~----~~~~~~W~C~vC~ 105 (134)
T 1zbd_B 81 NVCTKCGVETSN----NRPHPVWLCKICL 105 (134)
T ss_dssp EEETTSEEECCC----SSSSCCEEEHHHH
T ss_pred ccccccCCccCC----CCCccceechhhH
Confidence 456666654431 2233346788884
No 71
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.57 E-value=28 Score=18.97 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=15.6
Q ss_pred CcccccCccCCCC-------------cccCCCCCcccChhhhh
Q 037152 8 RKCSHCETRHTPQ-------------WRVGPLGPKTLCNACGV 37 (75)
Q Consensus 8 ~~C~~C~t~~Tp~-------------WR~gp~G~~~LCNaCGl 37 (75)
..|..||-.-.+. |..-|+. ..|-.||.
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~d--w~CP~Cg~ 43 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDD--WVCPLCGA 43 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTT--CBCTTTCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCC--CcCCCCCC
Confidence 4577777544332 4455543 46777764
No 72
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.55 E-value=10 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=24.9
Q ss_pred cCCcccccCccCCCCc-cc-C-CCCCcc-cChhhhhhhhhC
Q 037152 6 WQRKCSHCETRHTPQW-RV-G-PLGPKT-LCNACGVRYKSG 42 (75)
Q Consensus 6 ~~~~C~~C~t~~Tp~W-R~-g-p~G~~~-LCNaCGl~~~~~ 42 (75)
....|--||+.-+--+ +. | .+|.++ .|.-||..|.-.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~ 221 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV 221 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec
Confidence 4578999998765433 43 3 467555 499999999743
No 73
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.46 E-value=35 Score=17.95 Aligned_cols=21 Identities=19% Similarity=0.721 Sum_probs=10.7
Q ss_pred CCcccCCCCCcccChhhhhhhh
Q 037152 19 PQWRVGPLGPKTLCNACGVRYK 40 (75)
Q Consensus 19 p~WR~gp~G~~~LCNaCGl~~~ 40 (75)
..|+..... .+.|..||..|.
T Consensus 9 ~~~~~~~~~-~~~C~~C~~~f~ 29 (77)
T 2cot_A 9 SEWQQRERR-RYKCDECGKSFS 29 (77)
T ss_dssp CCSCCCCSC-SSBCSSSCCBCS
T ss_pred CcCcCCCCC-CEECCCCCcccC
Confidence 445444333 356777765543
No 74
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=20.45 E-value=48 Score=20.88 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=19.1
Q ss_pred CcccccCccCC-CCcccCCCCCcccChhhhhhh
Q 037152 8 RKCSHCETRHT-PQWRVGPLGPKTLCNACGVRY 39 (75)
Q Consensus 8 ~~C~~C~t~~T-p~WR~gp~G~~~LCNaCGl~~ 39 (75)
..|..|+.... +.|...- + ..+|++|--.+
T Consensus 6 ~~C~eC~~~~~d~~l~~~F-~-~~VC~~Cr~~~ 36 (111)
T 1d4u_A 6 VICEECGKEFMDSYLMDHF-D-LPTCDDCRDAD 36 (111)
T ss_dssp EECTTTCCEESCSSSTTTT-S-CCCCTTTCSSS
T ss_pred CccccCCChhhHHHHHHhC-C-eeechhhcccc
Confidence 35999997643 3343333 3 56999997554
Done!