BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037153
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 169/293 (57%), Gaps = 57/293 (19%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
LS + Y + CP ALS +++ V +AV E R ASLLRLHF+DCF GCD S++LDDT++F
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 62 ISEK---PQA-------------------CPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
EK P A CPGVVS ADILA+A RDSVV LGG SW V L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
RRDSTT S ++AN+ + P NLS LIS F L+ GAHTIG A+CT FR
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 154 HIYNGWNIGISFTESLRQICPASG---------------------------NGILHSGQE 186
IYN NI ++ +SL+ CP+ G G+LHS Q+
Sbjct: 182 RIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQ 241
Query: 187 LFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239
LFNG S +S V Y+++ + F DF A IKMGN+SPLTG++GQIR NCRK N
Sbjct: 242 LFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 161/302 (53%), Gaps = 66/302 (21%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +CP A +IV++ ++ A++++TR ASL+RLHF+DCF GCD S++LDDT S
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
SEK ACPGVVS +D+LA+A+ SV GGPSW V L
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
RRDS T + AN+SI P +LS + F L+ GAHT G ARC F
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 154 HIYNGWNIG-------ISFTESLRQICPASG---------------------------NG 179
++N G + +L+Q+CP +G +G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242
Query: 180 ILHSGQELFN--GNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRK 237
+L S QELF+ G+S ++V +A + ++F + F ++ I MGNISPLTGS G+IR++C+K
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKK 302
Query: 238 VN 239
VN
Sbjct: 303 VN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 180 bits (456), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 66/302 (21%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +CP A ++V+ V+ A ++++R ASL+RLHF+DCF GCD S++LD++ S
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
ISEK ACPGVVS D+LA+A++ SV GGPSW V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
RRD+ T ++ AN+SI PT LS + S F L+ GAHT G A C F
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 154 HIYNGWNIG-------ISFTESLRQICPASG---------------------------NG 179
++N G + +L+++CP G NG
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNG 243
Query: 180 ILHSGQELFN--GNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRK 237
+L S QELF+ G++ ++V +A + ++F + F ++ I MGNISPLTGS+G+IR++C+K
Sbjct: 244 LLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKK 303
Query: 238 VN 239
N
Sbjct: 304 TN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 149/304 (49%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ +G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 236 RKVN 239
R VN
Sbjct: 302 RVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 149/304 (49%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ +P L L +F L+ G HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 236 RKVN 239
R VN
Sbjct: 303 RVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 149/304 (49%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C +
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 236 RKVN 239
R VN
Sbjct: 303 RVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQK 242
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 236 RKVN 239
R VN
Sbjct: 303 RVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 236 RKVN 239
R VN
Sbjct: 302 RVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 236 RKVN 239
R VN
Sbjct: 302 RVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 236 RKVN 239
R VN
Sbjct: 303 RVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 166 bits (420), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 236 RKVN 239
R VN
Sbjct: 302 RVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 236 RKVN 239
R VN
Sbjct: 303 RVVN 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 147/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF DCF GCD S++LD+T SF
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 236 RKVN 239
R VN
Sbjct: 303 RVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 148/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+LRLHF+DCF GCD S++LD+T SF
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G H+ G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 236 RKVN 239
R VN
Sbjct: 302 RVVN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 147/301 (48%), Gaps = 68/301 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
LS Y SCP + IV+ V A+K E R AASL+RLHF+DCF GCD SL+LD S
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSE 61
Query: 62 ISEKPQ-------------------ACPGVVSWADILAIATRDSVVDLGGPSWKVRLERR 102
P ACPGVVS ADIL +A RDSVV GGP W+V L R+
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121
Query: 103 DSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIEAHGAHTIGLARCTTFREHIY 156
D ++ +AN ++ P L A+I+ F+ ++ GAHT G A+C F ++
Sbjct: 122 DGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLF 180
Query: 157 NGWNIG-------ISFTESLRQICPASGN---------------------------GILH 182
N G S +L+ +CP GN G+L
Sbjct: 181 NFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLS 240
Query: 183 SGQELFNG----NSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKV 238
S Q LF+ N+ LV+ Y+ S+F +DF A I+MGNIS G++G++R NCR +
Sbjct: 241 SDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRVI 298
Query: 239 N 239
N
Sbjct: 299 N 299
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 146/304 (48%), Gaps = 68/304 (22%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ Y +SCP +IV+ + ++++ R AAS+L LHF DCF GCD S++LD+T SF
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
+EK ACP VS AD+L IA + SV GGPSW+V L
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIEAHGAHTIGLARCTTFR 152
RRDS AN ++ P L L +F L+ G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 153 EHIYNGWNIGI-------SFTESLRQICPASGN--------------------------- 178
+ +YN N G+ ++ ++LR +CP +GN
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 179 GILHSGQELFNGNSANS---LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G++ S QELF+ +A LV+ +A+ F F A +MGNI+PLTG+ GQIR+NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 236 RKVN 239
R VN
Sbjct: 302 RVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 146/302 (48%), Gaps = 66/302 (21%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
L+ YR +CP IV + A + R ASL+RLHF+DCF GCDGS++L++T +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 62 ISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVRL 99
SE+ +CP VS ADILAIA + V GGP W V L
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 100 ERRDSTTVSRTAANTSIRRPTSNLSALISNF------MGSLIEAHGAHTIGLARCTTFRE 153
RRDS T +RT AN ++ P NL+ L ++F L+ G HT G ARC+TF
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 154 HIYNGWNIG-------ISFTESLRQICP--ASGNGILH---------------------- 182
+YN N G ++ E LR CP A+G+ + +
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG 241
Query: 183 ---SGQELFNGNSANS--LVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRK 237
S QELF+ A++ +V ++ + + F +F + IKMGNI LTG G+IR+ C
Sbjct: 242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNF 301
Query: 238 VN 239
VN
Sbjct: 302 VN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 141/294 (47%), Gaps = 63/294 (21%)
Query: 4 LSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASF 61
LS Y +CP+A SIV+ V+ AV+ + AA LLRLHF+DCF GCD S++LD +A+
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 62 ISEKPQACP-------------------------GVVSWADILAIATRDSVVDLGGPSWK 96
E+ QA P VVS +DILA+A RDSVV GGP ++
Sbjct: 69 PGEQ-QAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 97 VRLERRDSTTVSRTAANTS-IRRPTSNLSALISNFMG------SLIEAHGAHTIGLARCT 149
V L RRDS + + T S + P+SN+ +L++ L+ G HTIGLA C+
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 150 TFREHIYNGWNIGIS--FTESLRQICPASG--------------------------NGIL 181
+F + ++ + IS F L++ CPA G G+
Sbjct: 188 SFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNREGLF 247
Query: 182 HSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
S Q+LF +V+R+A F + F + KMG + T G++R NC
Sbjct: 248 VSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 141/304 (46%), Gaps = 68/304 (22%)
Query: 3 NLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTAS 60
+L Y +SCP A S+VQ V AA N + A L+R+HF+DCF GCD S++LD TA+
Sbjct: 1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTAN 60
Query: 61 FISEK----------------------PQACPGVVSWADILAIATRDSVVDLGGPSWKVR 98
+EK ACP VS ADILA A RDS G +++V
Sbjct: 61 NTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVP 120
Query: 99 LERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLIEAH------GAHTIGLARCTTFR 152
RRD T + AN I P N + LI++F + A GAH+IG+A C++F
Sbjct: 121 SGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 153 EHIYNGWNIG--------ISFTESLRQICPASGN-------------------------- 178
+YN +N G S+ LR CPA+
Sbjct: 181 NRLYN-FNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 179 ---GILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235
G+L S Q L + ++ VK A +++ + F +A +KMG I LTG+ G+IR NC
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
Query: 236 RKVN 239
VN
Sbjct: 300 SVVN 303
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 42/190 (22%)
Query: 73 VSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRR--PTSNLSALISNF 130
V++AD+ +A+ ++ + GGP ++ R D T + + P S L F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 131 --MG----SLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQICPASGNG----- 179
MG ++ GAHT+G +R +GW G T+ + A G
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDR------SGW--GKPETKYTKDGPGAPGGQSWTAQ 198
Query: 180 ---------------------ILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
+L + LF S ++YA D F KD+ A K+
Sbjct: 199 WLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKL 258
Query: 219 GNISPLTGSA 228
N+ G A
Sbjct: 259 SNLGAKFGPA 268
>pdb|3R89|A Chain A, Crystal Structure Of Orotidine 5-Phosphate Decarboxylase
From Anaerococcus Prevotii Dsm 20548
pdb|3R89|B Chain B, Crystal Structure Of Orotidine 5-Phosphate Decarboxylase
From Anaerococcus Prevotii Dsm 20548
Length = 290
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 39 LRLHFYDCFGCDGSLMLDDTASFISEKPQACPGVVSWADI 78
L++ +Y+ +G +G + DT S++ EK G V +DI
Sbjct: 65 LQIAYYESYGIEGXIAYRDTLSYLREKDLLSIGDVKRSDI 104
>pdb|1OLQ|A Chain A, The Trichoderma Reesei Cel12a P201c Mutant, Structure At
1.7 A Resolution
pdb|1OLQ|B Chain B, The Trichoderma Reesei Cel12a P201c Mutant, Structure At
1.7 A Resolution
Length = 218
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 76 ADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLI 135
DI I + V++GG SW + + V A T+ T+N S + NF L
Sbjct: 125 GDIGPIGSSQGTVNVGGQSWTLYYGYNGAMQVYSFVAQTN----TTNYSGDVKNFFNYLR 180
Query: 136 EAHGAHTIG 144
+ G + G
Sbjct: 181 DNKGYNAAG 189
>pdb|1OA2|A Chain A, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|B Chain B, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|C Chain C, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|D Chain D, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|E Chain E, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|F Chain F, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
Length = 218
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 76 ADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLI 135
DI I + V++GG SW + + V A T+ T+N S + NF L
Sbjct: 125 GDIGPIGSSQGTVNVGGQSWTLYYGYNGAMQVYSFVAQTN----TTNYSGDVKNFFNYLR 180
Query: 136 EAHGAHTIG 144
+ G + G
Sbjct: 181 DNKGYNAAG 189
>pdb|1H8V|A Chain A, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|B Chain B, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|C Chain C, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|D Chain D, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|E Chain E, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|F Chain F, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
Length = 218
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 76 ADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMGSLI 135
DI I + V++GG SW + + V A T+ T+N S + NF L
Sbjct: 125 GDIGPIGSSQGTVNVGGQSWTLYYGYNGAMQVYSFVAQTN----TTNYSGDVKNFFNYLR 180
Query: 136 EAHGAHTIG 144
+ G + G
Sbjct: 181 DNKGYNAAG 189
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 224 EQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 224 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 220 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 214 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 219 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 219 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 222 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 217 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 218 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 219 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 216 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 224 EQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 220 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|3FW6|A Chain A, Crystal Structure Of Celm2, A Bifunctional Glucanase-
Xylanase Protein From A Metagenome Library
Length = 534
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 171 QICPASGNGILHSGQELF--NGNSANSLV 197
Q P +GNG+L SGQ + N N AN+LV
Sbjct: 146 QWFPDAGNGVLTSGQNVTGNNPNDANTLV 174
>pdb|3II1|A Chain A, Structural Characterization Of Difunctional Glucanase-
Xylanse Celm2
Length = 535
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 171 QICPASGNGILHSGQELF--NGNSANSLV 197
Q P +GNG+L SGQ + N N AN+LV
Sbjct: 146 QWFPDAGNGVLTSGQNVTGNNPNDANTLV 174
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 112 ANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYN 157
++ I PT + AL + +I A + L RC REHI+N
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITA----AVDLDRCRELREHIFN 287
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 170 RQICPASGNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM 218
Q SG +L + L S+VK YA+D F KDF +A K+
Sbjct: 223 EQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 112 ANTSIRRPTSNLSALISNFMGSLIEAHGAHTIGLARCTTFREHIYN 157
++ I PT + AL + +I A + L RC REHI+N
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITA----AVDLDRCRELREHIFN 287
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 99 LERRDSTTVSRTAANTSIRRPTSNLSALISN 129
+ R D T V+R AA I+RP + + +I N
Sbjct: 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIEN 39
>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Ctp And Mg
pdb|2XWL|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Ctp And Mg
pdb|2XWM|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Cmp
pdb|2XWM|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Cmp
Length = 223
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 125 ALISNFMGSLIEAHGAHTIGLARCTTFREHIYNGWNIGISFTESLRQI 172
ALI+ + +L E H A GLA T + NG +G LR +
Sbjct: 109 ALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAV 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,754,590
Number of Sequences: 62578
Number of extensions: 248468
Number of successful extensions: 699
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 90
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)