Query 037153
Match_columns 239
No_of_seqs 176 out of 1184
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3E-87 6.4E-92 606.9 17.1 234 2-239 23-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.5E-82 3.3E-87 573.8 18.2 235 3-238 1-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 5.6E-60 1.2E-64 423.3 19.2 210 18-235 15-256 (289)
4 cd00691 ascorbate_peroxidase A 100.0 1.5E-58 3.3E-63 409.1 17.8 203 15-224 11-251 (253)
5 PLN02364 L-ascorbate peroxidas 100.0 4.3E-56 9.4E-61 392.4 17.4 212 6-224 3-248 (250)
6 PLN02879 L-ascorbate peroxidas 100.0 9.7E-55 2.1E-59 383.5 17.0 208 10-224 3-248 (251)
7 cd00692 ligninase Ligninase an 100.0 6.3E-53 1.4E-57 383.9 18.9 214 16-239 16-287 (328)
8 PF00141 peroxidase: Peroxidas 100.0 2E-54 4.2E-59 378.4 6.8 177 20-203 1-230 (230)
9 cd00314 plant_peroxidase_like 100.0 6.8E-49 1.5E-53 347.5 17.0 201 19-220 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1E-43 2.2E-48 328.9 15.5 213 17-229 44-401 (409)
11 cd08201 plant_peroxidase_like_ 100.0 2.5E-42 5.4E-47 304.8 14.9 185 27-220 34-264 (264)
12 TIGR00198 cat_per_HPI catalase 100.0 3.9E-42 8.5E-47 336.2 14.1 216 9-225 45-404 (716)
13 PRK15061 catalase/hydroperoxid 100.0 3.2E-38 6.8E-43 307.5 14.9 217 9-226 47-411 (726)
14 cd08200 catalase_peroxidase_2 100.0 1.4E-32 3.1E-37 245.7 13.7 201 22-222 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 99.9 3.7E-27 8E-32 231.2 16.5 204 18-222 428-709 (716)
16 PRK15061 catalase/hydroperoxid 99.9 8.5E-27 1.8E-31 227.7 16.2 200 22-222 442-721 (726)
17 COG0376 KatG Catalase (peroxid 99.9 1.3E-23 2.7E-28 198.2 13.9 202 19-221 71-415 (730)
18 COG0376 KatG Catalase (peroxid 98.2 3.5E-06 7.5E-11 81.1 7.9 196 23-222 453-725 (730)
19 PF11895 DUF3415: Domain of un 64.3 6.3 0.00014 29.2 2.4 18 206-223 2-19 (80)
20 PLN00017 photosystem I reactio 33.3 22 0.00047 26.7 1.0 20 200-219 38-57 (90)
21 PRK13859 type IV secretion sys 29.1 33 0.00071 23.4 1.2 31 78-108 9-42 (55)
22 PRK05264 transcriptional repre 28.9 50 0.0011 25.2 2.3 44 187-235 36-81 (105)
23 cd00490 Met_repressor_MetJ Met 28.6 51 0.0011 25.0 2.3 44 187-235 35-80 (103)
24 PF08782 c-SKI_SMAD_bind: c-SK 27.9 14 0.00031 28.3 -0.8 43 42-84 4-49 (96)
25 PRK12346 transaldolase A; Prov 27.5 2.3E+02 0.0051 26.2 6.9 54 89-143 168-241 (316)
26 PF06511 IpaD: Invasion plasmi 27.3 65 0.0014 30.1 3.2 27 205-232 160-187 (337)
27 COG1913 Predicted Zn-dependent 25.4 39 0.00084 28.8 1.3 11 140-150 133-143 (181)
28 TIGR02553 SipD_IpaD_SspD type 22.4 1.2E+02 0.0026 28.0 4.0 34 193-231 125-159 (308)
29 PF01816 LRV: Leucine rich rep 21.0 93 0.002 18.0 2.0 23 23-45 2-24 (26)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3e-87 Score=606.94 Aligned_cols=234 Identities=40% Similarity=0.681 Sum_probs=220.5
Q ss_pred CCCCccccccCChhHHHHHHHHHHHHHHhchhhhhhhhhhhhcccC--CCCCcccccCCCCCCCCCC-------------
Q 037153 2 CNLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASFISEKP------------- 66 (239)
Q Consensus 2 ~~l~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~--GcDgSill~~~~~~~~Ek~------------- 66 (239)
++|+++||++|||++|+||+++|++++.+||+++|++|||+||||| ||||||||+.+. .||+
T Consensus 23 ~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~---~Ek~a~~N~~l~Gf~~i 99 (324)
T PLN03030 23 QGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN---TEKTALPNLLLRGYDVI 99 (324)
T ss_pred ccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc---ccccCCCCcCcchHHHH
Confidence 4699999999999999999999999999999999999999999999 999999998532 3443
Q ss_pred --------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------
Q 037153 67 --------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------ 132 (239)
Q Consensus 67 --------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------ 132 (239)
++||++|||||||++||||||+++|||.|+|++||||+++|.+.++. +||+|+.++++|++.|++
T Consensus 100 ~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~ 178 (324)
T PLN03030 100 DDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQ 178 (324)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHH
Confidence 78999999999999999999999999999999999999999887775 899999999999999999
Q ss_pred hHHHHhccccccccccCCCCCCccC--------CCCCChHHHHHHHhhCCCCC---------------------------
Q 037153 133 SLIEAHGAHTIGLARCTTFREHIYN--------GWNIGISFTESLRQICPASG--------------------------- 177 (239)
Q Consensus 133 dlVaLsGaHTiG~ahc~~f~~r~~~--------dp~~d~~y~~~L~~~cp~~~--------------------------- 177 (239)
|||+||||||||++||.+|.+|+|| ||+||+.|+++|++.||..+
T Consensus 179 DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~ 258 (324)
T PLN03030 179 DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNG 258 (324)
T ss_pred HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhc
Confidence 9999999999999999999999995 78999999999999998310
Q ss_pred CCcccCCcccccCcchHHHHHHHhhCH----HHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 037153 178 NGILHSGQELFNGNSANSLVKRYADDI----SVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239 (239)
Q Consensus 178 ~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C~~~N 239 (239)
+|+|+|||+|++|++|+++|+.||.|+ +.|+++|++||+|||+|+||||.+|||||+|+++|
T Consensus 259 rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 259 RGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 899999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.5e-82 Score=573.78 Aligned_cols=235 Identities=50% Similarity=0.816 Sum_probs=221.7
Q ss_pred CCCccccccCChhHHHHHHHHHHHHHHhchhhhhhhhhhhhcccC--CCCCcccccCCCCCCCCCC--------------
Q 037153 3 NLSKHHYRSSCPQALSIVQAGVKAAVKNETRTAASLLRLHFYDCF--GCDGSLMLDDTASFISEKP-------------- 66 (239)
Q Consensus 3 ~l~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~--GcDgSill~~~~~~~~Ek~-------------- 66 (239)
||+++||++|||++|+||+++|++.+.++++++|+||||+||||| ||||||||+.++++..|+.
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 699999999999999999999999999999999999999999999 9999999987544444543
Q ss_pred -------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------h
Q 037153 67 -------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------S 133 (239)
Q Consensus 67 -------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------d 133 (239)
+.||++|||||||+||+|+||+++|||.|+|++||+|++++.+..+ +.||+|+.++++|++.|++ |
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 7899999999999999999999999999999999999998887766 7899999999999999999 9
Q ss_pred HHHHhccccccccccCCCCCCccC-------CCCCChHHHHHHHhhCCCC---------------------------CCC
Q 037153 134 LIEAHGAHTIGLARCTTFREHIYN-------GWNIGISFTESLRQICPAS---------------------------GNG 179 (239)
Q Consensus 134 lVaLsGaHTiG~ahc~~f~~r~~~-------dp~~d~~y~~~L~~~cp~~---------------------------~~g 179 (239)
||+|+||||||++||.+|.+|+|+ ||+||+.|...|++.||.. ++|
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~g 239 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRG 239 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhccc
Confidence 999999999999999999999985 7899999999999999863 178
Q ss_pred cccCCcccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCccC
Q 037153 180 ILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKV 238 (239)
Q Consensus 180 lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C~~~ 238 (239)
||+|||+|+.|++|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|+++
T Consensus 240 lL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 240 LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred CccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=5.6e-60 Score=423.30 Aligned_cols=210 Identities=20% Similarity=0.259 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhhhhcccC---------CCCCcccccCCC---CCCCCC-C--------cCCCCCCcHH
Q 037153 18 SIVQAGVKAAVKNETRTAASLLRLHFYDCF---------GCDGSLMLDDTA---SFISEK-P--------QACPGVVSWA 76 (239)
Q Consensus 18 ~iV~~~v~~~~~~~~~~a~~llRL~FHDc~---------GcDgSill~~~~---~~~~Ek-~--------~~cp~~VScA 76 (239)
+.+++++ ..+.++|+++|.+|||+||||| ||||||+++.+. .|.+.+ . .++ ++||||
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~iK~~~-~~VScA 92 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPVKAKH-PKITYA 92 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHHHHHc-CCcCHH
Confidence 4556666 4477899999999999999998 999999996532 122321 1 334 589999
Q ss_pred HHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------hHHHHhccccccccccCC
Q 037153 77 DILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIEAHGAHTIGLARCTT 150 (239)
Q Consensus 77 Dilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------dlVaLsGaHTiG~ahc~~ 150 (239)
|||+||+|+||+.+|||.|+|++||+|++++++ +++||+|+.++++|++.|++ |||+|+||||||.+||..
T Consensus 93 DilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~r 169 (289)
T PLN02608 93 DLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPER 169 (289)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccccccccccC
Confidence 999999999999999999999999999999864 45899999999999999998 999999999999999963
Q ss_pred --CCCCccCCC-CCChHHHHHHHhhCCCCCCCc--ccCCcccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCC
Q 037153 151 --FREHIYNGW-NIGISFTESLRQICPASGNGI--LHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGNISPLT 225 (239)
Q Consensus 151 --f~~r~~~dp-~~d~~y~~~L~~~cp~~~~gl--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~l~v~t 225 (239)
|.+.+...| +||++||++|...- .+|+ |+|||+|++|++|+++|+.||.||+.|+++|++||+||++|+|+|
T Consensus 170 ~g~~g~~~~Tp~~FDN~Yy~~ll~~~---~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvlt 246 (289)
T PLN02608 170 SGFDGPWTKEPLKFDNSYFVELLKGE---SEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTP 246 (289)
T ss_pred CCCCCCCCCCCCccChHHHHHHHcCC---cCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCC
Confidence 222222345 79999999998532 1576 899999999999999999999999999999999999999999999
Q ss_pred CCCCcccccC
Q 037153 226 GSAGQIRINC 235 (239)
Q Consensus 226 g~~GeIR~~C 235 (239)
|++||+.+.-
T Consensus 247 g~~Ge~~~~~ 256 (289)
T PLN02608 247 PSSAFKKKST 256 (289)
T ss_pred CCCCcccccC
Confidence 9999998754
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.5e-58 Score=409.06 Aligned_cols=203 Identities=20% Similarity=0.291 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHhchhhhhhhhhhhhcccCCCCCcccccCCC---CCCCCCC------------------cCCCCCC
Q 037153 15 QALSIVQAGVKAAVKNETRTAASLLRLHFYDCFGCDGSLMLDDTA---SFISEKP------------------QACPGVV 73 (239)
Q Consensus 15 ~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~GcDgSill~~~~---~~~~Ek~------------------~~cp~~V 73 (239)
..++||+++|++.++ +++++|++|||+|||||+||+|++.+... .+..||+ .++| +|
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~-~V 88 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYP-DI 88 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcC-CC
Confidence 467899999999999 99999999999999999776666554211 1123443 4454 89
Q ss_pred cHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------hHHHHhccccccccc
Q 037153 74 SWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIEAHGAHTIGLAR 147 (239)
Q Consensus 74 ScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------dlVaLsGaHTiG~ah 147 (239)
||||||+||+|+||+.+|||.|+|++||+|++++....++++||.|+.++++|++.|++ |||+|+||||||.+|
T Consensus 89 ScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~ 168 (253)
T cd00691 89 SYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCH 168 (253)
T ss_pred CHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeeccc
Confidence 99999999999999999999999999999999998877778899999999999999999 999999999999999
Q ss_pred cCCC--CCCccCCC-CCChHHHHHHHhhCCCCCCC--------cccCCcccccCcchHHHHHHHhhCHHHHHHHHHHHHH
Q 037153 148 CTTF--REHIYNGW-NIGISFTESLRQICPASGNG--------ILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATI 216 (239)
Q Consensus 148 c~~f--~~r~~~dp-~~d~~y~~~L~~~cp~~~~g--------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~ 216 (239)
|..+ .+.+...| .||++||++|+.. +| +|+|||+|+.|++|+.+|+.||.||++|+++|++||+
T Consensus 169 c~~~~~~g~~~~tp~~FDn~Yy~~ll~~-----~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~ 243 (253)
T cd00691 169 KERSGYDGPWTKNPLKFDNSYFKELLEE-----DWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHK 243 (253)
T ss_pred ccCCCCCCCCCCCCCcccHHHHHHHhcC-----CCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 9643 12211244 8999999999863 45 8999999999999999999999999999999999999
Q ss_pred HHhcCCCC
Q 037153 217 KMGNISPL 224 (239)
Q Consensus 217 Km~~l~v~ 224 (239)
||++|+|.
T Consensus 244 Km~~l~v~ 251 (253)
T cd00691 244 KLSELGVP 251 (253)
T ss_pred HHHhcCCC
Confidence 99999986
No 5
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4.3e-56 Score=392.40 Aligned_cols=212 Identities=21% Similarity=0.281 Sum_probs=178.6
Q ss_pred ccccc--cCChhHHHHHHHHHHHHHHhchhhhhhhhhhhhc-----ccC----CCCCcccccCCCC---CCCC-CC----
Q 037153 6 KHHYR--SSCPQALSIVQAGVKAAVKNETRTAASLLRLHFY-----DCF----GCDGSLMLDDTAS---FISE-KP---- 66 (239)
Q Consensus 6 ~~~Y~--~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FH-----Dc~----GcDgSill~~~~~---~~~E-k~---- 66 (239)
.+||. +-|+.+++.+++.+++.+ .+++++|.||||+|| ||+ ||||||.++.+.. |.+. +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i 81 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLL 81 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHH
Confidence 35666 348899999999999988 788999999999999 777 8999998864321 2221 11
Q ss_pred ---cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH-------hHHH
Q 037153 67 ---QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG-------SLIE 136 (239)
Q Consensus 67 ---~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~-------dlVa 136 (239)
+..-++|||||||+||+|+||+++|||.|+|++||+|++++++ +++||.|+.++++|++.|++ |||+
T Consensus 82 ~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~Va 158 (250)
T PLN02364 82 DPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQMGLSDKDIVA 158 (250)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHhcCCCHHHhee
Confidence 2222689999999999999999999999999999999999875 45799999999999999984 9999
Q ss_pred HhccccccccccC--CCCCCccCCC-CCChHHHHHHHhhCCCCCCCcc--cCCcccccCcchHHHHHHHhhCHHHHHHHH
Q 037153 137 AHGAHTIGLARCT--TFREHIYNGW-NIGISFTESLRQICPASGNGIL--HSGQELFNGNSANSLVKRYADDISVFVKDF 211 (239)
Q Consensus 137 LsGaHTiG~ahc~--~f~~r~~~dp-~~d~~y~~~L~~~cp~~~~glL--~SD~~L~~d~~t~~~V~~yA~d~~~F~~~F 211 (239)
|+||||||++||. +|.+.+...| +||++||++|+..- .+|+| +|||+|+.|++|+.+|+.||.||+.|+++|
T Consensus 159 LsGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~---~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~F 235 (250)
T PLN02364 159 LSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGE---KEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADY 235 (250)
T ss_pred eecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcCC---cCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHH
Confidence 9999999999993 3333333355 89999999998532 16775 599999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 037153 212 PRATIKMGNISPL 224 (239)
Q Consensus 212 a~Am~Km~~l~v~ 224 (239)
++||+||++|++-
T Consensus 236 a~Am~Km~~lg~~ 248 (250)
T PLN02364 236 AEAHMKLSELGFA 248 (250)
T ss_pred HHHHHHHHccCCC
Confidence 9999999999874
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=9.7e-55 Score=383.45 Aligned_cols=208 Identities=19% Similarity=0.257 Sum_probs=173.6
Q ss_pred ccCCh-------hHHHHHHHHHHHHHHhchhhhhhhhhhhhcccC---------CCCCcccccCC---CCCCCCCC----
Q 037153 10 RSSCP-------QALSIVQAGVKAAVKNETRTAASLLRLHFYDCF---------GCDGSLMLDDT---ASFISEKP---- 66 (239)
Q Consensus 10 ~~sCP-------~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~---------GcDgSill~~~---~~~~~Ek~---- 66 (239)
++.|| +..+-+++.+.+.+ ++...+|.+|||+||||. ||||||+++.+ +.|.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 3 KKSYPEVKEEYKKAVQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 46787 33344577777766 456899999999999997 99999998432 22333331
Q ss_pred ----cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------hHHH
Q 037153 67 ----QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIE 136 (239)
Q Consensus 67 ----~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------dlVa 136 (239)
++-.++|||||||+||+|+||+.+|||.|+|++||+|+.++++ +++||.|+.++++|++.|++ ||||
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVA 158 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVA 158 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHee
Confidence 3333789999999999999999999999999999999998865 45899999999999999998 9999
Q ss_pred HhccccccccccC--CCCCCccCCC-CCChHHHHHHHhhCCCCCCCc--ccCCcccccCcchHHHHHHHhhCHHHHHHHH
Q 037153 137 AHGAHTIGLARCT--TFREHIYNGW-NIGISFTESLRQICPASGNGI--LHSGQELFNGNSANSLVKRYADDISVFVKDF 211 (239)
Q Consensus 137 LsGaHTiG~ahc~--~f~~r~~~dp-~~d~~y~~~L~~~cp~~~~gl--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~F 211 (239)
||||||||++||. +|.+.+...| +|||+||++|...- .+|+ |+|||+|+.|++|+++|++||.||++||++|
T Consensus 159 LsGaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~---~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~F 235 (251)
T PLN02879 159 LSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGE---KEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDY 235 (251)
T ss_pred eeccccccccccccccCCCCCCCCccceeHHHHHHHHcCC---cCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHH
Confidence 9999999999995 3443333345 89999999998642 1566 7899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 037153 212 PRATIKMGNISPL 224 (239)
Q Consensus 212 a~Am~Km~~l~v~ 224 (239)
++||+||++|++.
T Consensus 236 a~Am~KL~~lg~~ 248 (251)
T PLN02879 236 TEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHccCCC
Confidence 9999999999975
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.3e-53 Score=383.86 Aligned_cols=214 Identities=20% Similarity=0.248 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHhchh---hhhhhhhhhhcccC--------------CCCCcccccCCC-----CCCCCCC-------
Q 037153 16 ALSIVQAGVKAAVKNETR---TAASLLRLHFYDCF--------------GCDGSLMLDDTA-----SFISEKP------- 66 (239)
Q Consensus 16 ~e~iV~~~v~~~~~~~~~---~a~~llRL~FHDc~--------------GcDgSill~~~~-----~~~~Ek~------- 66 (239)
+|..|+++|++.+..+.. .|+.+|||+||||+ |||||||++.+. .|.+.++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~ 95 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRP 95 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHH
Confidence 478999999999986544 57779999999996 999999996421 1222111
Q ss_pred ---cCCCCCCcHHHHHHHhhhhHhhh-cCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------hHHH
Q 037153 67 ---QACPGVVSWADILAIATRDSVVD-LGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIE 136 (239)
Q Consensus 67 ---~~cp~~VScADilalaar~av~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------dlVa 136 (239)
+.| |||||||+||+|+||+. .|||.|+|++||+|++++++. ++||.|+.++++|++.|++ |||+
T Consensus 96 ~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~---g~LP~p~~sv~~l~~~F~~~Gf~~~E~Va 169 (328)
T cd00692 96 FHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD---GLVPEPFDSVDKILARFADAGFSPDELVA 169 (328)
T ss_pred HHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc---cCCCCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence 566 99999999999999995 599999999999999998753 4799999999999999999 9999
Q ss_pred HhccccccccccC--CCCCCcc-CCC-CCChHHHHHHHhh---CCCC------------CCCcccCCcccccCcchHHHH
Q 037153 137 AHGAHTIGLARCT--TFREHIY-NGW-NIGISFTESLRQI---CPAS------------GNGILHSGQELFNGNSANSLV 197 (239)
Q Consensus 137 LsGaHTiG~ahc~--~f~~r~~-~dp-~~d~~y~~~L~~~---cp~~------------~~glL~SD~~L~~d~~t~~~V 197 (239)
|+||||||++|.. .+.+..+ ..| +||++||++++.. -|.. +..+|+||++|+.|++|+.+|
T Consensus 170 LsGAHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v 249 (328)
T cd00692 170 LLAAHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEW 249 (328)
T ss_pred hcccccccccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHH
Confidence 9999999999942 1211111 134 8999999986621 1211 133699999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 037153 198 KRYADDISVFVKDFPRATIKMGNISPLTGSAGQIRINCRKVN 239 (239)
Q Consensus 198 ~~yA~d~~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C~~~N 239 (239)
+.||+||++|+++|++||+||++|||. ...+.+|+.|+
T Consensus 250 ~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 250 QSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccC
Confidence 999999999999999999999999886 44788999885
No 8
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2e-54 Score=378.44 Aligned_cols=177 Identities=42% Similarity=0.690 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhcccC---CCCCcccccCCC----CCCCCCC-------------cCCCCCCcHHHHH
Q 037153 20 VQAGVKAAVKNETRTAASLLRLHFYDCF---GCDGSLMLDDTA----SFISEKP-------------QACPGVVSWADIL 79 (239)
Q Consensus 20 V~~~v~~~~~~~~~~a~~llRL~FHDc~---GcDgSill~~~~----~~~~Ek~-------------~~cp~~VScADil 79 (239)
||++|+++++++++++|+||||+||||| |||||||+...+ .|.+.+. ++||++|||||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADii 80 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADII 80 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccccccccccccCcceeeechhhHHhhhcccccCCCCHHHHH
Confidence 7999999999999999999999999998 999999983221 1222110 6799999999999
Q ss_pred HHhhhhHhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------hHHHHhccccccccccCCCCC
Q 037153 80 AIATRDSVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIEAHGAHTIGLARCTTFRE 153 (239)
Q Consensus 80 alaar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------dlVaLsGaHTiG~ahc~~f~~ 153 (239)
+||+|+||+++|||.|+|++||+|++++++.++ .+||.|..++++|++.|++ |||||+||||||++||.+|.
T Consensus 81 alAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~- 158 (230)
T PF00141_consen 81 ALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS- 158 (230)
T ss_dssp HHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-
T ss_pred HHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceecccc-
Confidence 999999999999999999999999999999877 6899999999999999998 99999999999999999999
Q ss_pred CccC--C------------------------C-CCChHHHHHHHhhCCCCCCCcccCCcccccCcchHHHHHHHhhC
Q 037153 154 HIYN--G------------------------W-NIGISFTESLRQICPASGNGILHSGQELFNGNSANSLVKRYADD 203 (239)
Q Consensus 154 r~~~--d------------------------p-~~d~~y~~~L~~~cp~~~~glL~SD~~L~~d~~t~~~V~~yA~d 203 (239)
|+|. | | .|||.||++|.. ++|+|+|||+|++|++|+++|++||+|
T Consensus 159 rl~~~~dp~~d~~~~~~~C~~~~~~~~~~dtp~~fDN~Yy~~ll~-----~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 159 RLYFPPDPTMDPGYAGQNCNSGGDNGVPLDTPTVFDNSYYKNLLN-----GRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp GTSCSSGTTSTHHHHHHSSSTSGCTCEESSSTTS-SSHHHHHHHH-----TEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred ccccccccccccccceeccCCCccccccccCCCcchhHHHHHHhc-----CCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 8872 1 3 677788877775 379999999999999999999999986
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=6.8e-49 Score=347.51 Aligned_cols=201 Identities=29% Similarity=0.382 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhchhhhhhhhhhhhcccC----------CCCCcccccCC---CCCCC-CCC-----------cCCCCCC
Q 037153 19 IVQAGVKAAVKNETRTAASLLRLHFYDCF----------GCDGSLMLDDT---ASFIS-EKP-----------QACPGVV 73 (239)
Q Consensus 19 iV~~~v~~~~~~~~~~a~~llRL~FHDc~----------GcDgSill~~~---~~~~~-Ek~-----------~~cp~~V 73 (239)
.|++.|++.+.+++++++++|||+||||+ ||||||+++.+ +.|.+ ++. .. |++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~-~~~v 80 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDG-GNPV 80 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCC-CCcc
Confidence 58899999999999999999999999999 79999999742 22222 111 22 7899
Q ss_pred cHHHHHHHhhhhHhhhc--CCCCccccccccCCCCCc--ccccCCCCCCCCCCHHHHHHHhHH------hHHHHh-cccc
Q 037153 74 SWADILAIATRDSVVDL--GGPSWKVRLERRDSTTVS--RTAANTSIRRPTSNLSALISNFMG------SLIEAH-GAHT 142 (239)
Q Consensus 74 ScADilalaar~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~------dlVaLs-GaHT 142 (239)
||||||++|+++||+.+ |||.|+|++||+|++.++ ...+.+.+|.|..+++++++.|.+ |||||+ ||||
T Consensus 81 S~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHt 160 (255)
T cd00314 81 SRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHT 160 (255)
T ss_pred cHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCee
Confidence 99999999999999999 999999999999999664 233345788888899999999999 999999 9999
Q ss_pred c-cccccCCCCCCcc----CCC-CCChHHHHHHHhhC-C----------CCCCCcccCCcccccCcchHHHHHHHhhCHH
Q 037153 143 I-GLARCTTFREHIY----NGW-NIGISFTESLRQIC-P----------ASGNGILHSGQELFNGNSANSLVKRYADDIS 205 (239)
Q Consensus 143 i-G~ahc~~f~~r~~----~dp-~~d~~y~~~L~~~c-p----------~~~~glL~SD~~L~~d~~t~~~V~~yA~d~~ 205 (239)
| |++||..|..|+. ..| +|||+||++|+..- . ..+.++|+||++|+.|++|+.+|+.||.|++
T Consensus 161 i~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~ 240 (255)
T cd00314 161 LGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQE 240 (255)
T ss_pred ccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHH
Confidence 9 9999999987742 134 89999999998632 1 1124899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 037153 206 VFVKDFPRATIKMGN 220 (239)
Q Consensus 206 ~F~~~Fa~Am~Km~~ 220 (239)
+|+++|++||+||++
T Consensus 241 ~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 241 KFFEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1e-43 Score=328.87 Aligned_cols=213 Identities=15% Similarity=0.237 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHhc--------hhhhhhhhhhhhcccC---------CCC-CcccccCCC---CCCCCCC---------
Q 037153 17 LSIVQAGVKAAVKNE--------TRTAASLLRLHFYDCF---------GCD-GSLMLDDTA---SFISEKP--------- 66 (239)
Q Consensus 17 e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~---------GcD-gSill~~~~---~~~~Ek~--------- 66 (239)
.+.|++.|++.+... ..++|.+|||+||++. |++ |+|+++.+. .|.+.+.
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik 123 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIK 123 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHHH
Confidence 478899999998864 3799999999999999 886 899998542 1222211
Q ss_pred cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCccc------------------------------------
Q 037153 67 QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSRT------------------------------------ 110 (239)
Q Consensus 67 ~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~~------------------------------------ 110 (239)
++.|..||+||+|+||+.+||+.+|||.|++..||.|...+...
T Consensus 124 ~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~ 203 (409)
T cd00649 124 QKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVN 203 (409)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccccC
Confidence 44556799999999999999999999999999999999754320
Q ss_pred -ccCCCCCCCCCCHHHHHHHhHH------hHHHH-hccccccccccCCCCCCcc--------------------------
Q 037153 111 -AANTSIRRPTSNLSALISNFMG------SLIEA-HGAHTIGLARCTTFREHIY-------------------------- 156 (239)
Q Consensus 111 -~~~~~lP~p~~~~~~l~~~F~~------dlVaL-sGaHTiG~ahc~~f~~r~~-------------------------- 156 (239)
+....||+|..++++|++.|.+ ||||| +||||||++||..|.+|+.
T Consensus 204 Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~ 283 (409)
T cd00649 204 PEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKD 283 (409)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCC
Confidence 1123699999999999999999 99999 5999999999988765542
Q ss_pred -----------CCC-CCChHHHHHHHhh------CC------------------C-------CCCCcccCCcccccCcch
Q 037153 157 -----------NGW-NIGISFTESLRQI------CP------------------A-------SGNGILHSGQELFNGNSA 193 (239)
Q Consensus 157 -----------~dp-~~d~~y~~~L~~~------cp------------------~-------~~~glL~SD~~L~~d~~t 193 (239)
..| +|||+||+.|... -| . .++|||+||++|+.|++|
T Consensus 284 t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~t 363 (409)
T cd00649 284 TITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEY 363 (409)
T ss_pred CccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccH
Confidence 133 7899999988761 01 0 136899999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHH--hcCCCCCCCCC
Q 037153 194 NSLVKRYADDISVFVKDFPRATIKM--GNISPLTGSAG 229 (239)
Q Consensus 194 ~~~V~~yA~d~~~F~~~Fa~Am~Km--~~l~v~tg~~G 229 (239)
+++|++||.||++||++|++||+|| +.|||++--.|
T Consensus 364 r~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 364 EKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 9999999999999999999999999 69999985444
No 11
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.5e-42 Score=304.83 Aligned_cols=185 Identities=22% Similarity=0.270 Sum_probs=150.9
Q ss_pred HHHhchhhhhhhhhhhhcccC---------CCCCcccccCCCCCCCCCC------------cCCCCCCcHHHHHHHhhhh
Q 037153 27 AVKNETRTAASLLRLHFYDCF---------GCDGSLMLDDTASFISEKP------------QACPGVVSWADILAIATRD 85 (239)
Q Consensus 27 ~~~~~~~~a~~llRL~FHDc~---------GcDgSill~~~~~~~~Ek~------------~~cp~~VScADilalaar~ 85 (239)
+...++++|++||||+||||| ||||||+++.. .+||. ..-..+||||||||||+|+
T Consensus 34 ~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~~VScADiialAa~~ 110 (264)
T cd08201 34 APGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSPRSSMADLIAMGVVT 110 (264)
T ss_pred CcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccCccCHHHHHHHHHHH
Confidence 344678999999999999999 99999999842 23433 1123479999999999999
Q ss_pred HhhhcCCCCccccccccCCCCCcccccCCCCCCCCCCHHHHHHHhHH------hHHHHhc-cccccccccCCCCCC----
Q 037153 86 SVVDLGGPSWKVRLERRDSTTVSRTAANTSIRRPTSNLSALISNFMG------SLIEAHG-AHTIGLARCTTFREH---- 154 (239)
Q Consensus 86 av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~------dlVaLsG-aHTiG~ahc~~f~~r---- 154 (239)
||+.+|||.|+|++||+|++++++. .||.|+.++++|++.|++ |||+||| |||||++||..|.+.
T Consensus 111 AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g 186 (264)
T cd08201 111 SVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPG 186 (264)
T ss_pred HHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCc
Confidence 9999999999999999999988764 399999999999999999 9999995 999999999887211
Q ss_pred --------ccCCC-CCChHHHHHHHhhCCCC-----CCCcccCCcccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhc
Q 037153 155 --------IYNGW-NIGISFTESLRQICPAS-----GNGILHSGQELFNGNSANSLVKRYADDISVFVKDFPRATIKMGN 220 (239)
Q Consensus 155 --------~~~dp-~~d~~y~~~L~~~cp~~-----~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 220 (239)
+...| .||++|+.+++..-..+ ..-.+.||..+|+.+.-. .++.+| ++..|.+.++..+.||.+
T Consensus 187 ~~~~~~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 187 SVPDTVLQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred cccCCCCCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 12234 89999999988532211 134589999999876443 667788 799999999999999964
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.9e-42 Score=336.16 Aligned_cols=216 Identities=16% Similarity=0.213 Sum_probs=173.7
Q ss_pred cccCChhH-HHHHHHHHHHHHHhc--------hhhhhhhhhhhhcccC---------CC-CCcccccCCC---CCCCCCC
Q 037153 9 YRSSCPQA-LSIVQAGVKAAVKNE--------TRTAASLLRLHFYDCF---------GC-DGSLMLDDTA---SFISEKP 66 (239)
Q Consensus 9 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~---------Gc-DgSill~~~~---~~~~Ek~ 66 (239)
|++.+-.+ .+.|++.|++.+... ..++|.+|||+||++. || .|+|+++... .|.+...
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldk 124 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDK 124 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHH
Confidence 33344333 467999999999864 3799999999999998 77 5899997532 2322111
Q ss_pred ---------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCc-----------------------------
Q 037153 67 ---------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVS----------------------------- 108 (239)
Q Consensus 67 ---------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~----------------------------- 108 (239)
++||++|||||||+||+++||+.+|||+|+|.+||+|+..+.
T Consensus 125 a~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 125 ARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 889999999999999999999999999999999999994321
Q ss_pred --------ccccCCCCCCCCCCHHHHHHHhHH------hHHHHh-ccccccccccCCCCCCcc-----------------
Q 037153 109 --------RTAANTSIRRPTSNLSALISNFMG------SLIEAH-GAHTIGLARCTTFREHIY----------------- 156 (239)
Q Consensus 109 --------~~~~~~~lP~p~~~~~~l~~~F~~------dlVaLs-GaHTiG~ahc~~f~~r~~----------------- 156 (239)
+.+ ...||+|..++++|++.|.+ |||||+ ||||||++||.+|.+|+-
T Consensus 205 ~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c 283 (716)
T TIGR00198 205 EMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHN 283 (716)
T ss_pred hccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccC
Confidence 112 23699999999999999999 999995 999999999988775531
Q ss_pred --------------------CCC-CCChHHHHHHHhh------CC----------------C-------CCCCcccCCcc
Q 037153 157 --------------------NGW-NIGISFTESLRQI------CP----------------A-------SGNGILHSGQE 186 (239)
Q Consensus 157 --------------------~dp-~~d~~y~~~L~~~------cp----------------~-------~~~glL~SD~~ 186 (239)
..| +||++||++|... -| . ...++|+||++
T Consensus 284 ~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDla 363 (716)
T TIGR00198 284 QYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLA 363 (716)
T ss_pred CCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHH
Confidence 123 6888888888753 01 0 02689999999
Q ss_pred cccCcchHHHHHHHhhCHHHHHHHHHHHHHHHh--cCCCCC
Q 037153 187 LFNGNSANSLVKRYADDISVFVKDFPRATIKMG--NISPLT 225 (239)
Q Consensus 187 L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~l~v~t 225 (239)
|..|++++++|+.||.|++.|+++|++||+||+ .||++.
T Consensus 364 L~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 364 LRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred hccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 999999999999999999999999999999998 577654
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.2e-38 Score=307.48 Aligned_cols=217 Identities=17% Similarity=0.250 Sum_probs=173.2
Q ss_pred cccCChhH-HHHHHHHHHHHHHhc--------hhhhhhhhhhhhcccC---------CCC-CcccccCCC---CCCCCCC
Q 037153 9 YRSSCPQA-LSIVQAGVKAAVKNE--------TRTAASLLRLHFYDCF---------GCD-GSLMLDDTA---SFISEKP 66 (239)
Q Consensus 9 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~---------GcD-gSill~~~~---~~~~Ek~ 66 (239)
|++-+-.. .+.|++.|++.+... ...+|.+|||+||++. ||+ |+|+++... .|.+...
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~k 126 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDK 126 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHH
Confidence 33344333 467999999998864 3799999999999998 886 899997532 2332211
Q ss_pred ---------cCCCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcc----------------------------
Q 037153 67 ---------QACPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSR---------------------------- 109 (239)
Q Consensus 67 ---------~~cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~---------------------------- 109 (239)
++.+..||+||+|+||+..||+.+|||+|++..||.|...+..
T Consensus 127 a~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~ 206 (726)
T PRK15061 127 ARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLA 206 (726)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchh
Confidence 4456689999999999999999999999999999999865432
Q ss_pred -----------cccCCCCCCCCCCHHHHHHHhHH------hHHHHh-ccccccccccCCCCCCc----------------
Q 037153 110 -----------TAANTSIRRPTSNLSALISNFMG------SLIEAH-GAHTIGLARCTTFREHI---------------- 155 (239)
Q Consensus 110 -----------~~~~~~lP~p~~~~~~l~~~F~~------dlVaLs-GaHTiG~ahc~~f~~r~---------------- 155 (239)
.+ ...+|+|..++.+|++.|.+ |||||+ ||||||++||..|..|+
T Consensus 207 a~~mgliyvnpeg-p~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw 285 (726)
T PRK15061 207 AVQMGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGW 285 (726)
T ss_pred hhhccceecCCCC-CCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccc
Confidence 11 22489999999999999999 999995 99999999998775433
Q ss_pred ---------------------cCCC-CCChHHHHHHHhh------CCC-------------------------CCCCccc
Q 037153 156 ---------------------YNGW-NIGISFTESLRQI------CPA-------------------------SGNGILH 182 (239)
Q Consensus 156 ---------------------~~dp-~~d~~y~~~L~~~------cp~-------------------------~~~glL~ 182 (239)
...| +||++||+.|... -|. ...+||+
T Consensus 286 ~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLt 365 (726)
T PRK15061 286 KNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLT 365 (726)
T ss_pred cccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccccc
Confidence 1134 7999999999763 110 0268999
Q ss_pred CCcccccCcchHHHHHHHhhCHHHHHHHHHHHHHHH--hcCCCCCC
Q 037153 183 SGQELFNGNSANSLVKRYADDISVFVKDFPRATIKM--GNISPLTG 226 (239)
Q Consensus 183 SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~l~v~tg 226 (239)
||++|+.|++++++|++||.||++|+++|++||+|| ..+|+++-
T Consensus 366 SD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 366 TDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred ccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 999999999999999999999999999999999999 45777653
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.4e-32 Score=245.69 Aligned_cols=201 Identities=18% Similarity=0.166 Sum_probs=157.6
Q ss_pred HHHHHHHHhchhhhhhhhhhhhcccC---------CCCCc-ccccCC---CCCCCCCC-----------cCCC------C
Q 037153 22 AGVKAAVKNETRTAASLLRLHFYDCF---------GCDGS-LMLDDT---ASFISEKP-----------QACP------G 71 (239)
Q Consensus 22 ~~v~~~~~~~~~~a~~llRL~FHDc~---------GcDgS-ill~~~---~~~~~Ek~-----------~~cp------~ 71 (239)
+.+++.+.+..-+++.||||+||++. |++|+ |.|... +.|.+|.- +..| .
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~ 96 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGK 96 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCc
Confidence 45666677777889999999999998 99999 888753 22444211 3333 2
Q ss_pred CCcHHHHHHHhhhhHhhhcCC-----CCccccccccCCCCCccccc--CCCCCCCCC------------CHHHHHHHhHH
Q 037153 72 VVSWADILAIATRDSVVDLGG-----PSWKVRLERRDSTTVSRTAA--NTSIRRPTS------------NLSALISNFMG 132 (239)
Q Consensus 72 ~VScADilalaar~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~~------------~~~~l~~~F~~ 132 (239)
.||+||+|+||+..||+.+|| |.|++.+||.|...+..... ...+|.+.. ..+.|++.|.+
T Consensus 97 ~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~r 176 (297)
T cd08200 97 KVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQL 176 (297)
T ss_pred cccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHh
Confidence 799999999999999999999 99999999999986532110 113454432 34789999998
Q ss_pred ------hHHHHhccc-cccccccCCCCCCccCCC-CCChHHHHHHHhh----CCC-------------CCC---CcccCC
Q 037153 133 ------SLIEAHGAH-TIGLARCTTFREHIYNGW-NIGISFTESLRQI----CPA-------------SGN---GILHSG 184 (239)
Q Consensus 133 ------dlVaLsGaH-TiG~ahc~~f~~r~~~dp-~~d~~y~~~L~~~----cp~-------------~~~---glL~SD 184 (239)
|||||+||| ++|..|-.++.+.|...| +|||+||.+|... -|. .+. ..+++|
T Consensus 177 lglsd~EmvaL~Gg~r~lG~~~~~s~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~D 256 (297)
T cd08200 177 LTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVD 256 (297)
T ss_pred CCCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhh
Confidence 999999997 799999877777777677 8999999999842 111 011 137889
Q ss_pred cccccCcchHHHHHHHhhC--HHHHHHHHHHHHHHHhcCC
Q 037153 185 QELFNGNSANSLVKRYADD--ISVFVKDFPRATIKMGNIS 222 (239)
Q Consensus 185 ~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~l~ 222 (239)
.+|.+|++.+++|+.||.| |++||+||++||.||+++.
T Consensus 257 l~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 257 LVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred hhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 9999999999999999873
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.95 E-value=3.7e-27 Score=231.20 Aligned_cols=204 Identities=17% Similarity=0.177 Sum_probs=153.4
Q ss_pred HHHHHHHHHH---HHhchhhhhhhhhhhhcccC---------CCCCc-ccccCCCC---CCCC----------CC-cCCC
Q 037153 18 SIVQAGVKAA---VKNETRTAASLLRLHFYDCF---------GCDGS-LMLDDTAS---FISE----------KP-QACP 70 (239)
Q Consensus 18 ~iV~~~v~~~---~~~~~~~a~~llRL~FHDc~---------GcDgS-ill~~~~~---~~~E----------k~-~~cp 70 (239)
++|+++|.+. +....-.++.||||+||++. |++|+ |+|+...+ |..+ +. +..|
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~ 507 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFA 507 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3446665553 44555678999999999998 99998 88875322 2111 11 3333
Q ss_pred -CCCcHHHHHHHhhhhHhhhc---CCC--CccccccccCCCCCcccccCCCCC---C------------CCCCHHHHHHH
Q 037153 71 -GVVSWADILAIATRDSVVDL---GGP--SWKVRLERRDSTTVSRTAANTSIR---R------------PTSNLSALISN 129 (239)
Q Consensus 71 -~~VScADilalaar~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~------------p~~~~~~l~~~ 129 (239)
..||.||+|+||+..||+.+ ||| .+|+.+||.|.+.... +++...| . .......|++.
T Consensus 508 ~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 508 KGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 27999999999999999998 998 5888999999986542 2222222 1 11234567888
Q ss_pred hHH------hHHHHhcc-ccccccccCCCCCCccCCC-CCChHHHHHHHhh----CCC-------------CC-CCcc--
Q 037153 130 FMG------SLIEAHGA-HTIGLARCTTFREHIYNGW-NIGISFTESLRQI----CPA-------------SG-NGIL-- 181 (239)
Q Consensus 130 F~~------dlVaLsGa-HTiG~ahc~~f~~r~~~dp-~~d~~y~~~L~~~----cp~-------------~~-~glL-- 181 (239)
|.. |||||+|| |++|..|-.++.+.+...| +|+|+||.+|... -|. .+ ..++
T Consensus 587 a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t 666 (716)
T TIGR00198 587 AQLLTLTAPEMTVLIGGMRVLGANHGGSKHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTAT 666 (716)
T ss_pred HHhCCCChHHHHheecchhhccccCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccC
Confidence 888 99999999 5999999877777777677 8999999999752 111 01 2233
Q ss_pred cCCcccccCcchHHHHHHHhhCH--HHHHHHHHHHHHHHhcCC
Q 037153 182 HSGQELFNGNSANSLVKRYADDI--SVFVKDFPRATIKMGNIS 222 (239)
Q Consensus 182 ~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~~l~ 222 (239)
.+|.+|.+|++.+.+|+.||.|+ ++||+||++|+.|+.+++
T Consensus 667 ~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 667 RVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred hhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 77999999999999999999997 899999999999999986
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.94 E-value=8.5e-27 Score=227.73 Aligned_cols=200 Identities=19% Similarity=0.177 Sum_probs=155.0
Q ss_pred HHHHHHHHhchhhhhhhhhhhhcccC---------CCCCc-ccccCCC---CCCCCCC----------cC-------CCC
Q 037153 22 AGVKAAVKNETRTAASLLRLHFYDCF---------GCDGS-LMLDDTA---SFISEKP----------QA-------CPG 71 (239)
Q Consensus 22 ~~v~~~~~~~~~~a~~llRL~FHDc~---------GcDgS-ill~~~~---~~~~Ek~----------~~-------cp~ 71 (239)
.++++.+....-..+.||||+||++. |++|+ |+|+... .|..|.- ++ -..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~ 521 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGK 521 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 45666666666689999999999998 99999 9997532 2321110 11 124
Q ss_pred CCcHHHHHHHhhhhHhhhc---CC--CCccccccccCCCCCcccccC---CCCCCCC------------CCHHHHHHHhH
Q 037153 72 VVSWADILAIATRDSVVDL---GG--PSWKVRLERRDSTTVSRTAAN---TSIRRPT------------SNLSALISNFM 131 (239)
Q Consensus 72 ~VScADilalaar~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~l~~~F~ 131 (239)
.||.||+|+||+..||+.+ || |.+|+.+||.|.+.... +++ ..+|.+. ...+.|++.|.
T Consensus 522 ~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~ 600 (726)
T PRK15061 522 KVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQ 600 (726)
T ss_pred ceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHHHHH
Confidence 6999999999999999998 68 99999999999986532 222 2456543 12378999999
Q ss_pred H------hHHHHhccc-cccccccCCCCCCccCCC-CCChHHHHHHHhhC----CCC-------------C-CCc--ccC
Q 037153 132 G------SLIEAHGAH-TIGLARCTTFREHIYNGW-NIGISFTESLRQIC----PAS-------------G-NGI--LHS 183 (239)
Q Consensus 132 ~------dlVaLsGaH-TiG~ahc~~f~~r~~~dp-~~d~~y~~~L~~~c----p~~-------------~-~gl--L~S 183 (239)
+ |||||+||| ++|..|-.++.+.+...| +|+|+||.+|...- |.. + ..+ +.+
T Consensus 601 ~lglt~~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~ 680 (726)
T PRK15061 601 LLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRV 680 (726)
T ss_pred hCCCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChh
Confidence 8 999999997 799999777766666667 89999999998421 110 1 112 578
Q ss_pred CcccccCcchHHHHHHHhhC--HHHHHHHHHHHHHHHhcCC
Q 037153 184 GQELFNGNSANSLVKRYADD--ISVFVKDFPRATIKMGNIS 222 (239)
Q Consensus 184 D~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~l~ 222 (239)
|.+|.+|++.+.+|+.||.| |++||+||++|+.|+.+++
T Consensus 681 Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 681 DLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred heecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999998 9999999999999999986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=198.16 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhch--------hhhhhhhhhhhcccC---------C-CCCccccc---CCCCCCCC-CC--------cC
Q 037153 19 IVQAGVKAAVKNET--------RTAASLLRLHFYDCF---------G-CDGSLMLD---DTASFISE-KP--------QA 68 (239)
Q Consensus 19 iV~~~v~~~~~~~~--------~~a~~llRL~FHDc~---------G-cDgSill~---~~~~~~~E-k~--------~~ 68 (239)
.|+..+++.+.... ..+|-+|||+||-+. | -.|..++. +.|+|.+. |. ++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPIKkK 150 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPIKKK 150 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhHhHh
Confidence 45556666665442 489999999999888 3 34556664 33444432 22 66
Q ss_pred CCCCCcHHHHHHHhhhhHhhhcCCCCccccccccCCCCCcc--------------------------------------c
Q 037153 69 CPGVVSWADILAIATRDSVVDLGGPSWKVRLERRDSTTVSR--------------------------------------T 110 (239)
Q Consensus 69 cp~~VScADilalaar~av~~~GGP~~~v~~GR~D~~~s~~--------------------------------------~ 110 (239)
.+..+||||++.|++.+|++.+|++++.+..||.|-..+.. .
T Consensus 151 YG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPE 230 (730)
T COG0376 151 YGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPE 230 (730)
T ss_pred hcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCC
Confidence 77899999999999999999999999999999999876654 2
Q ss_pred ccCCCCCCCCCCHHHHHHHhHH------hHHHHh-ccccccccccCCCC-----------------------------C-
Q 037153 111 AANTSIRRPTSNLSALISNFMG------SLIEAH-GAHTIGLARCTTFR-----------------------------E- 153 (239)
Q Consensus 111 ~~~~~lP~p~~~~~~l~~~F~~------dlVaLs-GaHTiG~ahc~~f~-----------------------------~- 153 (239)
+ ++..|+|..+..++++.|++ |.|||+ ||||+|++|...-. +
T Consensus 231 G-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dt 309 (730)
T COG0376 231 G-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDT 309 (730)
T ss_pred C-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCccc
Confidence 2 45699999999999999999 999998 79999999975400 0
Q ss_pred -------CccCCC-CCChHHHHHHHh------hCCCC------------------------CCCcccCCcccccCcchHH
Q 037153 154 -------HIYNGW-NIGISFTESLRQ------ICPAS------------------------GNGILHSGQELFNGNSANS 195 (239)
Q Consensus 154 -------r~~~dp-~~d~~y~~~L~~------~cp~~------------------------~~glL~SD~~L~~d~~t~~ 195 (239)
.+...| .|++.|+..|.. +-|.+ ...||++|.+|..||..++
T Consensus 310 itsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~k 389 (730)
T COG0376 310 ITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEK 389 (730)
T ss_pred ccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHH
Confidence 011144 799999999874 22211 1458999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcC
Q 037153 196 LVKRYADDISVFVKDFPRATIKMGNI 221 (239)
Q Consensus 196 ~V~~yA~d~~~F~~~Fa~Am~Km~~l 221 (239)
+.++|.+||+.|.+.|++|+.||.+-
T Consensus 390 Is~rf~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 390 ISRRFLEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999753
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=98.23 E-value=3.5e-06 Score=81.05 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=116.8
Q ss_pred HHHHHHHhchhhhhhhhhhhhcccC---------CCCCc-ccccCC---CCCCCCCC-----------cCCCCCCcHHHH
Q 037153 23 GVKAAVKNETRTAASLLRLHFYDCF---------GCDGS-LMLDDT---ASFISEKP-----------QACPGVVSWADI 78 (239)
Q Consensus 23 ~v~~~~~~~~~~a~~llRL~FHDc~---------GcDgS-ill~~~---~~~~~Ek~-----------~~cp~~VScADi 78 (239)
++++.+.+..=....|+-.+|--+- |.+|. |.|.+- +.|..+.- +.....||.||+
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADl 532 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADL 532 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHh
Confidence 3455555555566778888886554 45544 566532 22221111 233356999999
Q ss_pred HHHhhhhHhhhc---CCCC--ccccccccCCCCCcccccCC-CCCCCC-------------CCHHH-HHHH------hHH
Q 037153 79 LAIATRDSVVDL---GGPS--WKVRLERRDSTTVSRTAANT-SIRRPT-------------SNLSA-LISN------FMG 132 (239)
Q Consensus 79 lalaar~av~~~---GGP~--~~v~~GR~D~~~s~~~~~~~-~lP~p~-------------~~~~~-l~~~------F~~ 132 (239)
|+|++..+|+.+ .|-. +|+..||.|....... +.. ..=.|. .+.++ |++. =+.
T Consensus 533 IVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Ltap 611 (730)
T COG0376 533 IVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAP 611 (730)
T ss_pred eeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCc
Confidence 999999999875 6765 5667999998764321 100 000111 11111 1111 111
Q ss_pred hHHHHhccc-cccccc----cCCCCCCccCCCCCChHHHHHHHhhC----CCC-CC----------Cc-----ccCCccc
Q 037153 133 SLIEAHGAH-TIGLAR----CTTFREHIYNGWNIGISFTESLRQIC----PAS-GN----------GI-----LHSGQEL 187 (239)
Q Consensus 133 dlVaLsGaH-TiG~ah----c~~f~~r~~~dp~~d~~y~~~L~~~c----p~~-~~----------gl-----L~SD~~L 187 (239)
||++|.||- .+|.-+ ...|.+|. -.+.|.||.+|...- |.. .+ |- -..|..+
T Consensus 612 emtVLiGGlRvLg~n~g~s~~GVfT~~p---g~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvf 688 (730)
T COG0376 612 EMTVLIGGLRVLGANYGGSKHGVFTDRP---GVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVF 688 (730)
T ss_pred cceEEEcceEeeccCCCCCccceeccCc---ccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEe
Confidence 999998763 344333 23355442 278999999887521 211 00 11 2345555
Q ss_pred ccCcchHHHHHHHhhC--HHHHHHHHHHHHHHHhcCC
Q 037153 188 FNGNSANSLVKRYADD--ISVFVKDFPRATIKMGNIS 222 (239)
Q Consensus 188 ~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~l~ 222 (239)
-+++..+.+.+-||.+ ++.|.+||+.|+.|..++.
T Consensus 689 Gsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 689 GSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 5677788899999875 7899999999999988763
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=64.35 E-value=6.3 Score=29.20 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 037153 206 VFVKDFPRATIKMGNISP 223 (239)
Q Consensus 206 ~F~~~Fa~Am~Km~~l~v 223 (239)
.....|..||.||+.||-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356799999999998864
No 20
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=33.28 E-value=22 Score=26.67 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.1
Q ss_pred HhhCHHHHHHHHHHHHHHHh
Q 037153 200 YADDISVFVKDFPRATIKMG 219 (239)
Q Consensus 200 yA~d~~~F~~~Fa~Am~Km~ 219 (239)
|-..|..||+.|+..+.|=+
T Consensus 38 Y~~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKRG 57 (90)
T ss_pred CChHHHHHHHHHhhhhhHHH
Confidence 55679999999999887744
No 21
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=29.06 E-value=33 Score=23.37 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=22.8
Q ss_pred HHHHhhh---hHhhhcCCCCccccccccCCCCCc
Q 037153 78 ILAIATR---DSVVDLGGPSWKVRLERRDSTTVS 108 (239)
Q Consensus 78 ilalaar---~av~~~GGP~~~v~~GR~D~~~s~ 108 (239)
||+||+- |-...+.||-++.-.||--..-|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 5666663 556678999999999997665443
No 22
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=28.88 E-value=50 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=31.9
Q ss_pred cccCcchHHHHHHH--hhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 037153 187 LFNGNSANSLVKRY--ADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235 (239)
Q Consensus 187 L~~d~~t~~~V~~y--A~d~~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C 235 (239)
+++|.+|+..|+.. |.|.+...+.|-.|+.- .+| -.+..+||.+
T Consensus 36 iLTdERTRRQvnNLRHATNSELLCEAFLHA~TG----QPL-P~D~Dl~Kd~ 81 (105)
T PRK05264 36 ILTDERTRRQVNNLRHATNSELLCEAFLHAFTG----QPL-PDDEDLRKER 81 (105)
T ss_pred HHhhHHHHHHHhhhhhcccHHHHHHHHHHHHcC----CCC-CChhhhhhcC
Confidence 56899999999754 88999999999999852 232 2345555554
No 23
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=28.63 E-value=51 Score=25.00 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=32.0
Q ss_pred cccCcchHHHHHHH--hhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 037153 187 LFNGNSANSLVKRY--ADDISVFVKDFPRATIKMGNISPLTGSAGQIRINC 235 (239)
Q Consensus 187 L~~d~~t~~~V~~y--A~d~~~F~~~Fa~Am~Km~~l~v~tg~~GeIR~~C 235 (239)
.++|.+|+..|+.. |.|.+...+.|-.|+.- .+| -.+..+||.+
T Consensus 35 iLTdERTRRQvnnlRHATNSELLCEAFLHAfTG----QPL-P~D~Dl~K~~ 80 (103)
T cd00490 35 ILTDERTRRQVNNLRHATNSELLCEAFLHAFTG----QPL-PDDADLRKER 80 (103)
T ss_pred HHhhHHHHHHHhhhhhcccHHHHHHHHHHHhcC----CCC-CChhhhhhcC
Confidence 56899999999754 78999999999999852 232 2345555554
No 24
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=27.93 E-value=14 Score=28.32 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=18.5
Q ss_pred hhcccC-CCCCcccccCCCCCCCC--CCcCCCCCCcHHHHHHHhhh
Q 037153 42 HFYDCF-GCDGSLMLDDTASFISE--KPQACPGVVSWADILAIATR 84 (239)
Q Consensus 42 ~FHDc~-GcDgSill~~~~~~~~E--k~~~cp~~VScADilalaar 84 (239)
.+|+|| ||.|+...+.-....+. +=..|...-|-.+.|.=..|
T Consensus 4 V~HeC~g~c~G~f~P~lY~~~~a~CI~C~~C~~~FsP~kFV~HsHr 49 (96)
T PF08782_consen 4 VYHECFGGCRGSFIPELYSSPNAKCIECLECRGMFSPQKFVFHSHR 49 (96)
T ss_dssp EEE-STT-EEEEE-GGG--STT---EEETTT--EE-HHHHTT--SS
T ss_pred eEEeecCccceEechhhcCCCCCCceEcccCCCEeCCcCEEEecCC
Confidence 479999 99999975532110010 11566666666666544443
No 25
>PRK12346 transaldolase A; Provisional
Probab=27.52 E-value=2.3e+02 Score=26.19 Aligned_cols=54 Identities=7% Similarity=0.053 Sum_probs=31.4
Q ss_pred hcCCCCccccccccCCCCCcccccCCCCCC----CCCCHHHHHHHhHH----------------hHHHHhccccc
Q 037153 89 DLGGPSWKVRLERRDSTTVSRTAANTSIRR----PTSNLSALISNFMG----------------SLIEAHGAHTI 143 (239)
Q Consensus 89 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~----------------dlVaLsGaHTi 143 (239)
.+|-..+..+.||-|...-...... .++. +-..+.++.+.|++ ++.+|.|.|.+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~~~-~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKPMD-PYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCEEEecccHHHHhhhhccccc-cccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 3577889999999886432211111 1211 12346666666655 77777777753
No 26
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=27.28 E-value=65 Score=30.14 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCC-ccc
Q 037153 205 SVFVKDFPRATIKMGNISPLTGSAG-QIR 232 (239)
Q Consensus 205 ~~F~~~Fa~Am~Km~~l~v~tg~~G-eIR 232 (239)
..|+++|...+.||+.. +..|.+| .|.
T Consensus 160 Tdyyq~fneilskms~~-I~aG~DGn~Vk 187 (337)
T PF06511_consen 160 TDYYQDFNEILSKMSDW-IKAGKDGNNVK 187 (337)
T ss_dssp HHHHHHHHHHHHHHGGG-EEECSSCTEEE
T ss_pred HHHHHHHHHHHHHHHhh-hhcCCCCCeee
Confidence 46999999999999877 7888887 554
No 27
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=25.41 E-value=39 Score=28.80 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=9.9
Q ss_pred cccccccccCC
Q 037153 140 AHTIGLARCTT 150 (239)
Q Consensus 140 aHTiG~ahc~~ 150 (239)
|||+|-.||.+
T Consensus 133 GH~~GL~HC~N 143 (181)
T COG1913 133 GHLLGLSHCPN 143 (181)
T ss_pred hhhcCcccCCC
Confidence 79999999974
No 28
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=22.37 E-value=1.2e+02 Score=28.00 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=25.2
Q ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCC-cc
Q 037153 193 ANSLVKRYADDISVFVKDFPRATIKMGNISPLTGSAG-QI 231 (239)
Q Consensus 193 t~~~V~~yA~d~~~F~~~Fa~Am~Km~~l~v~tg~~G-eI 231 (239)
...+|+.|. .|+++|..+|.||+.- +..|.+| .|
T Consensus 125 Ya~lvk~YT----d~yQ~fn~~lSkls~~-IsaG~DGn~V 159 (308)
T TIGR02553 125 YENVVEGYT----DFYQAFSDILSKMQDW-ISPGKDGNNV 159 (308)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhhh-cccCCCCCee
Confidence 344555554 4999999999999754 7778888 54
No 29
>PF01816 LRV: Leucine rich repeat variant; InterPro: IPR004830 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This signature describes a leucine-rich repeat variant (LRV), which has a novel repetitive structural motif consisting of alternating alpha- and 3(10)-helices arranged in a right-handed superhelix, with the absence of the beta-sheets present in other LRRs [].; PDB: 1LRV_A.
Probab=21.02 E-value=93 Score=17.99 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHHHHHhchhhhhhhhhhhhcc
Q 037153 23 GVKAAVKNETRTAASLLRLHFYD 45 (239)
Q Consensus 23 ~v~~~~~~~~~~a~~llRL~FHD 45 (239)
.|+.++..+|.+.+.+|+..-||
T Consensus 2 ~VR~avA~~P~~P~~~L~~La~D 24 (26)
T PF01816_consen 2 EVRAAVARRPNLPPEVLEQLAHD 24 (26)
T ss_dssp HHHHHHHHH--S-GGGGGGGTT-
T ss_pred HHHHHHHHccCCCHHHHHHhccC
Confidence 57888899999988888877776
Done!