BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037155
(1403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 17/219 (7%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ 953
D L ++ + G +TA++G +G GK+TL G + + G I D K Y +K
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 954 ETFARVS-GYC-EQTDIHSPHVTLYESLLYSAW-LRLSSDVDTKKRKIFVDEVMELVELK 1010
R S G + D ++Y+ + + A ++L D + +KR VD ++ ++
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-EIRKR---VDNALKRTGIE 134
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRN 1069
L+D + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V
Sbjct: 135 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 1070 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ G T++ H IDI + + + + + GRVI G
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D+ +S GQKKRV +LV KVL++DE + GLD +I K L +M + +T+
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 415 IVALLQPAPETYDL------FDDIILISEGQIVYHGPRDNVL---EFFEQMGFKCPERKG 465
I+A T+D+ D++ ++ EG+++ G V E ++ + P
Sbjct: 198 IIA-------THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGH 250
Query: 466 VADFLQE 472
+ + L+E
Sbjct: 251 LMEILKE 257
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 37/265 (13%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQ 953
+++ + VS + G AL+G SG GKTT + +LAG + T G I D+ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKR------KIFVDEVMELV 1007
R G Q PH+T++E++ + R S + +KR K+ +D L+
Sbjct: 75 ----REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN---LL 127
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
+ KP + LS Q++R+ +A LV P ++ DEP S LDA I+ +
Sbjct: 128 DRKPTQ-----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
Query: 1068 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPG 1126
++ + G T V H + + + + +G V Y P E +++
Sbjct: 177 KHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTP--------DEVYDSPKN 227
Query: 1127 VPKIKDAYNPATWMLEVSNISVENQ 1151
+ NP T L ++SVEN+
Sbjct: 228 MFVASFIGNPPTNFLRDFSVSVENK 252
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 62/305 (20%)
Query: 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTE 243
V+ + VS VK LLGP G GKTT +L LAG I+K
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-------------------IYKP- 55
Query: 244 QASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG+I + +N+ P+ R + Q+ + MTV E + F R
Sbjct: 56 -TSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA----------RR 104
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
+S+ E ++ + V +A + L+ D +L D +S
Sbjct: 105 ISKDEVEK------------RVVEIARK---LLIDNLL--------------DRKPTQLS 135
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQ++RV LV KVLL DE + LD++ + +K + + +T + A
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQEQY 482
E + I + ++G++V +G D V + + M +FL++ + + +Q
Sbjct: 196 -EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQT 254
Query: 483 WFRKN 487
+++
Sbjct: 255 ILKRD 259
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
++ ++ + G L+G SG GKTT + ++AG T G I GD ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
V Q+ PH+T+YE++ + ++ + KR + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
P LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRG 1101
+ ++ D + +M RG
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRG 218
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 108/310 (34%), Gaps = 88/310 (28%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
+K +LLGP G GKTT + +AG E G+I +
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL---------------------EEPTEGRIYFGD 72
Query: 254 HELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGI 312
++ P+ R + + Q MTV E + F +
Sbjct: 73 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF------------------- 113
Query: 313 KPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTG 372
P EID ++ A Q L+ Y +L SGGQ++RV
Sbjct: 114 -PKDEIDKRVRWAAELLQIEELLNRYPAQL-------------------SGGQRQRVAVA 153
Query: 373 EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432
+V VLLMDE + LD+ + +K++ + VT I + E + D I
Sbjct: 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRI 212
Query: 433 ILISEGQIVYHG--------------------PRDNVLE------FFEQMGFKCPERKGV 466
+++ GQ++ G P N+LE + E GF+ + +
Sbjct: 213 AVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDL 272
Query: 467 ADFLQEVTSK 476
D L++ K
Sbjct: 273 MDLLKDYVGK 282
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
++ ++ + G L+G SG GKTT + ++AG T G I GD ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
V Q+ PH+T+YE++ + ++ + KR + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
P LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRG 1101
+ ++ D + +M RG
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRG 219
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 108/310 (34%), Gaps = 88/310 (28%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCG 253
+K +LLGP G GKTT + +AG E G+I +
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGL---------------------EEPTEGRIYFGD 73
Query: 254 HELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGI 312
++ P+ R + + Q MTV E + F +
Sbjct: 74 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF------------------- 114
Query: 313 KPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTG 372
P EID ++ A Q L+ Y +L SGGQ++RV
Sbjct: 115 -PKDEIDKRVRWAAELLQIEELLNRYPAQL-------------------SGGQRQRVAVA 154
Query: 373 EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432
+V VLLMDE + LD+ + +K++ + VT I + E + D I
Sbjct: 155 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRI 213
Query: 433 ILISEGQIVYHG--------------------PRDNVLE------FFEQMGFKCPERKGV 466
+++ GQ++ G P N+LE + E GF+ + +
Sbjct: 214 AVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDL 273
Query: 467 ADFLQEVTSK 476
D L++ K
Sbjct: 274 MDLLKDYVGK 283
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 944
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G YI+ +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NI 67
Query: 945 KISGYPKKQETFARVS--GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
K + + T R G+ Q P +T E++ + + ++R+ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 1003 VMELVEL-------KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
+++ EL KP N LS Q++R+ IA L NP II D+PT L
Sbjct: 128 CLKMAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 1056 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106
D++ +M+ ++ + G+TVV H ++ F G R+IY
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+SGGQ++RV L ++L D+ + LDS T +I + LK++ T++V
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 25/236 (10%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 944
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G YI+ +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NI 67
Query: 945 KISGYPKKQETFARVS--GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
K + + T R G+ Q P +T E++ + + ++R+ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+++ EL + N LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1063 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY--AGPLGRESH 1115
+M+ ++ + G+TVV H ++ F G R+IY G + RE
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIYLKDGEVEREEK 228
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+SGGQ++RV L ++L D+ + LDS T +I + LK++ T++V
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 21/227 (9%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
G +G SG GK+TL+ ++AG +T G G+ +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
PH+++ E++ + L + +R V++V E+++L L D LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1085
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1086 IDIFEAFDELLLMKRGGRVIYAG-PLGRESHKLIEYFEAVPGVPKIK 1131
++ D+++++ GRV G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D + +SGGQ++RV G LV V L+DE + LD++ Q+ + ++ + TM
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 415 IVALLQPAPETYDLFDDIILISEGQI--------VYHGPRDNVLEFF---EQMGFKCPER 463
I + E L D I+++ G++ +YH P D + F +M F +
Sbjct: 188 IY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKV 246
Query: 464 KGVA-DFLQEVTSKKDQEQYWF 484
A D +Q +++Q W
Sbjct: 247 TATAIDQVQVELPMPNRQQVWL 268
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 21/227 (9%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
G +G SG GK+TL+ ++AG +T G G+ +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
PH+++ E++ + L + +R V++V E+++L L D LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1085
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1086 IDIFEAFDELLLMKRGGRVIYAG-PLGRESHKLIEYFEAVPGVPKIK 1131
++ D+++++ GRV G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D + +SGGQ++RV G LV V L+DE + LD++ Q+ + ++ + TM
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 415 IVALLQPAPETYDLFDDIILISEGQI--------VYHGPRDNVLEFF---EQMGFKCPER 463
I + E L D I+++ G++ +YH P D + F +M F +
Sbjct: 188 IY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKV 246
Query: 464 KGVA-DFLQEVTSKKDQEQYWF 484
A D +Q +++Q W
Sbjct: 247 TATAIDQVQVELPMPNRQQVWL 268
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 123
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 124 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ H+ S + D +++M++G
Sbjct: 180 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I L D II++ +G+IV G +L E +
Sbjct: 191 RTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKKQET 955
L++L ++ R G + ++G SG+GK+T + L + + EG+I I G K
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 73
Query: 956 FARVS---GYCEQTDIHSPHVTLYESLLYS-----AWLRLSSDVDTKKRKIFVDEVMELV 1007
+V G Q PH+T+ ++ + W R ++ + MEL+
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA----------KAMELL 123
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
+ L+D P + LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 124 DKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 181
Query: 1068 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ + G T+V H+ E D +L M GG +I G
Sbjct: 182 KQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ +RV L K++L DE ++ LD ++ +KQ+ + +TM+V +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 196
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEV 473
++ D ++ + G I+ G +++ F P+ + FL +V
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 121
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 122 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ H+ S + D +++M++G
Sbjct: 178 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I L T D II++ +G+IV G +L E +
Sbjct: 189 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 127
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 128 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ H+ S + D +++M++G
Sbjct: 184 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I L T D II++ +G+IV G +L E +
Sbjct: 195 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKKQETFA 957
L++++ + G AL+G SG+GK+TL+ +AG + T G I D K ++ P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
R G Q PH+T+Y+++ + LR + + K+ V EV +++ + L +
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKLLNRYP 131
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057
LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 132 W-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 62/264 (23%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L +++ +K LLGP G+GK+TL+ +AG I+K S
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-------------------IYKP--TS 57
Query: 247 GKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
GKI + ++ E P+ R + Q+ + MTV + + F EL +
Sbjct: 58 GKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFP-------------LELRK 104
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
P EID ++ VA L+ Y +L SGGQ
Sbjct: 105 -------APREEIDKKVREVAKMLHIDKLLNRYPWQL-------------------SGGQ 138
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425
++RV LV +VLL+DE + LD+ ++ LK++ + +T + A E
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EA 197
Query: 426 YDLFDDIILISEGQIVYHGPRDNV 449
+ D I +I EG+I+ G D V
Sbjct: 198 LAMADRIAVIREGEILQVGTPDEV 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 33/232 (14%)
Query: 900 LLHSVSGAFRPGVLTAL---------------MGVSGAGKTTLMDVLAG---RKTGG-YI 940
++ +VS F+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 941 EGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFV 1000
+ + S R G QT P++T +E++ + S + +KR V
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---V 121
Query: 1001 DEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-- 1058
+EV +++++ L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILDI---HHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1059 -AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+A +++ V++ + G T++ H P+ DIF D + ++ +G V P
Sbjct: 177 DSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
R +SG Q++RV LV +LL+DE + LD+ +K++ + VT++V
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 419 LQPAPETYDLFDDIILISEGQIVYHG-PRD 447
PA + + + D + ++ +G++V G P D
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKKQET 955
L++L ++ R G + ++G SG+GK+T + L + + EG+I I G K
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 94
Query: 956 FARVS---GYCEQTDIHSPHVTLYESLLYS-----AWLRLSSDVDTKKRKIFVDEVMELV 1007
+V G Q PH+T+ ++ + W R ++ + MEL+
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA----------KAMELL 144
Query: 1008 ELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
+ L+D P + LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 145 DKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202
Query: 1068 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
+ + G T+V H+ E D +L M GG +I G
Sbjct: 203 KQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ +RV L K++L DE ++ LD ++ +KQ+ + +TM+V +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 217
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEV 473
++ D ++ + G I+ G +++ F P+ + FL +V
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 21/227 (9%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
G +G SG GK+TL+ ++AG +T G G+ +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST 1027
PH+++ E++ + L + +R V++V E+++L L D LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1085
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1086 IDIFEAFDELLLMKRGGRVIYAG-PLGRESHKLIEYFEAVPGVPKIK 1131
++ D+++++ GRV G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D + +SGGQ++RV G LV V L+D+ + LD++ Q+ + ++ + TM
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 415 IVALLQPAPETYDLFDDIILISEGQI--------VYHGPRDNVLEFF---EQMGFKCPER 463
I + E L D I+++ G++ +YH P D + F +M F +
Sbjct: 188 IY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKV 246
Query: 464 KGVA-DFLQEVTSKKDQEQYWF 484
A D +Q +++Q W
Sbjct: 247 TATAIDQVQVELPMPNRQQVWL 268
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 33/232 (14%)
Query: 900 LLHSVSGAFRPGVLTAL---------------MGVSGAGKTTLMDVLAG---RKTGG-YI 940
++ +VS F+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 941 EGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFV 1000
+ + S R G QT P++T +E++ + S + +KR V
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---V 121
Query: 1001 DEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-- 1058
+EV +++++ L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILDI---HHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1059 -AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+A +++ V++ + G T++ H P+ DIF D + ++ +G V P
Sbjct: 177 DSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418
R +SGGQ++RV LV +LL+DE + LD+ +K++ + VT++V
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 419 LQPAPETYDLFDDIILISEGQIVYHG-PRD 447
PA + + + D + ++ +G++V G P D
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 123
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 124 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ H+ S + D +++M++G
Sbjct: 180 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I L T D II++ +G+IV G +L E +
Sbjct: 191 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L V+ F G + ++G +G+GKTTL+ +LAG G+I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 960 SGYCEQT-DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
GY Q T+ E + +S + + + +KR + +V+ELV L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR---IKKVLELV-------GLSG 132
Query: 1019 LPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
L + LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 1077 VVCTIHQ 1083
++ H+
Sbjct: 193 IILVTHE 199
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 69/269 (25%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKDV+ + ++ +++G G+GKTTL+ LAG L A
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL----------------------AA 63
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELS 304
+G+I G + F+ ++ Y+ Q+ TV E + FS +G+ +E+
Sbjct: 64 AGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMR 118
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD--ICADTMVGDEMRRGIS 362
+R K+ VL+L+GL AD + +S
Sbjct: 119 KRIKK-----------------------------VLELVGLSGLAAADPL-------NLS 142
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQK+R+ ML + L +DE + LD + +I + L+ + + + L+
Sbjct: 143 GGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESL---KNEGKGIILVTHE 199
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
E D D I+ IS G I + G + +E
Sbjct: 200 LEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 127
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ D+ TS LD + +
Sbjct: 128 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ H+ S + D +++M++G
Sbjct: 184 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ D+ ++ LD + I + + ++
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKG 194
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I L T D II++ +G+IV G +L E +
Sbjct: 195 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 16/212 (7%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E 954
+Q+L ++ + G AL+G SG GK+T + ++ ++ ++G + I G +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR- 1013
+ G Q + T+ E++ Y R +D ++ + + + P +
Sbjct: 461 YLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKARE 574
Query: 1074 GRTVVCTIHQPSI----DIFEAFDELLLMKRG 1101
GRT + H+ S D+ FD +++++G
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +S + G AL+G SG GK+T++ +L + + G + + G KQ V
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQ---LNV 1102
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
Q I S E +L+ + + R + +E++ + + + L
Sbjct: 1103 QWLRAQLGIVSQ-----EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 1020 P-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1071 VDTGRTVVCTIHQPS 1085
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 174 LHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNK 233
+H +++VQILK ++ VK + L+G G GK+T + L +L++ L
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRLYDPL-------- 443
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 293
G ++ G ++ RT + VR + +GV
Sbjct: 444 ------------DGMVSIDGQDI------RT-------------INVR----YLREIIGV 468
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
++ +L + E + + D +D KAV A D+++KL DT+V
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN-----AYDFIMKL---PHQFDTLV 520
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
G+ + +SGGQK+R+ LV K+LL+DE ++ LD+ +
Sbjct: 521 GERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T VGD+ + +SGGQK+R+ LV +LL+DE ++ LD+ + + + L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+I L T D I++I G++ HG +L
Sbjct: 1221 RTCIVIAHRL----STIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 16/212 (7%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---E 954
+Q+L ++ + G AL+G SG GK+T + ++ ++ ++G + I G +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR- 1013
+ G Q + T+ E++ Y R +D ++ + + + P +
Sbjct: 461 YLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKARE 574
Query: 1074 GRTVVCTIHQPSI----DIFEAFDELLLMKRG 1101
GRT + H+ S D+ FD +++++G
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +S + G AL+G SG GK+T++ +L + + G + + G KQ V
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQ---LNV 1102
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
Q I S E +L+ + + R + +E++ + + + L
Sbjct: 1103 QWLRAQLGIVSQ-----EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 1020 P-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1071 VDTGRTVVCTIHQPS 1085
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 174 LHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNK 233
+H +++VQILK ++ VK + L+G G GK+T + L +L++ L
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRLYDPL-------- 443
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 293
G ++ G ++ RT + VR + +GV
Sbjct: 444 ------------DGMVSIDGQDI------RT-------------INVR----YLREIIGV 468
Query: 294 GTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353
++ +L + E + + D +D KAV A D+++KL DT+V
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN-----AYDFIMKL---PHQFDTLV 520
Query: 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSST 395
G+ + +SGGQK+R+ LV K+LL+DE ++ LD+ +
Sbjct: 521 GERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T VGD+ + +SGGQK+R+ LV +LL+DE ++ LD+ + + + L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+I L T D I++I G++ HG +L
Sbjct: 1221 RTCIVIAHRL----STIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ- 953
+D Q+L +S +P + A G SG GK+T+ +L + G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 954 --ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
E + G+ Q D T+ E+L Y L D + +D ++
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 1012 LRDAL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
+ D L VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + +
Sbjct: 125 MPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL- 182
Query: 1069 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+++ GRT + H+ S I +A D++ +++G
Sbjct: 183 DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 350 DTMVGDEMRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407
+T VG+ RG ISGGQ++R+ + K+L++DE + LDS + + K L ++
Sbjct: 130 NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 408 HIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+I L + D I I +GQI G + ++
Sbjct: 187 KGRTTLVIAHRLSTIVDA----DKIYFIEKGQITGSGKHNELV 225
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
QIL+D+S +P+ + GP G GK+T+
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTI 44
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 121
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 122 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ I + + D +++M++G
Sbjct: 178 IMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I A L T D II++ +G+IV G +L E +
Sbjct: 189 RTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKK----- 952
+L +++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 953 ----------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
Q+ + + +P +++ E ++Y+A L + D
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 127
Query: 1003 VMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
+ EL+ + +VG G GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 128 ---ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1063 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+MR + + + GRTV+ I + + D +++M++G
Sbjct: 184 IMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+T+VG E G+SGGQ++R+ LV K+L+ DE ++ LD + I + + ++
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456
V +I A L T D II++ +G+IV G +L E +
Sbjct: 195 RTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 889 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 944
KT GE+ + L +V+ + G ++ G SG+GK+T ++++ + T G YI+ +I
Sbjct: 9 KTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NI 67
Query: 945 KISGYPKKQETFARVS--GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE 1002
K + + T R G+ Q P +T E++ + ++R+ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE 127
Query: 1003 VMELVEL-------KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
++ EL KP N LS Q++R+ IA L NP II DEPT L
Sbjct: 128 CLKXAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPIILADEPTGAL 176
Query: 1056 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA--GPLGR 1112
D++ + + ++ + G+TVV H ++ F G R+IY G + R
Sbjct: 177 DSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIYLKDGEVER 225
Query: 1113 E 1113
E
Sbjct: 226 E 226
Score = 36.6 bits (83), Expect = 0.098, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
+SGGQ++RV L ++L DE + LDS T +I + LK++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET----FARVSGYCEQT 966
G +TAL+G SG+GK+T++ +L + G I + G+ +Q +++ ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-DALVGLPGVNGL 1025
+ S ++ E++ Y A S + +R V + + P + +VG GV L
Sbjct: 428 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 484
Query: 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+ S
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS 543
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 117/282 (41%), Gaps = 64/282 (22%)
Query: 174 LHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNK 233
+H + +V I +D S + +T L+GP G+GK+T++
Sbjct: 347 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL------------------- 387
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRC 290
L++R++ + ASG I+ GH++ + P + +SQ + ++ E + +
Sbjct: 388 SLLLRLY--DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGA-- 442
Query: 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350
DP A Q + V + V + +
Sbjct: 443 -----------------------DDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFN 474
Query: 351 TMVGDEMRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408
T+VG+ +G+ SGGQK+R+ L+ K+LL+DE ++ LD+ + + + L +++
Sbjct: 475 TVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531
Query: 409 IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
V +I L T + + ++ +G+I +G + +L
Sbjct: 532 GRTVLVIAHRLS----TIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET----FARVSGYCEQT 966
G +TAL+G SG+GK+T++ +L + G I + G+ +Q +++ ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-DALVGLPGVNGL 1025
+ S ++ E++ Y A S + +R V + + P + +VG GV L
Sbjct: 459 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H S
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 117/283 (41%), Gaps = 64/283 (22%)
Query: 174 LHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNK 233
+H + +V I +D S + +T L+GP G+GK+T++
Sbjct: 378 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL------------------- 418
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRC 290
L++R++ + ASG I+ GH++ + P + +SQ + ++ E + +
Sbjct: 419 SLLLRLY--DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGAD- 474
Query: 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350
DP A Q + V + V + +
Sbjct: 475 ------------------------DPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFN 505
Query: 351 TMVGDEMRRGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408
T+VG+ +G+ SGGQK+R+ L+ K+LL+DE ++ LD+ + + + L +++
Sbjct: 506 TVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 562
Query: 409 IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
V +I L T + + ++ +G+I +G + +L
Sbjct: 563 GRTVLVIAHHLS----TIKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 23/209 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L S++ G AL+G +G+GK+T+ +L EGDIKI G K + R S
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG--KNVNKYNRNS 90
Query: 961 -----GYCEQTDIHSPHVTLYESLLYSAWLRLSSDV--DTKKRKIFVDEVMELVELKPLR 1013
G Q I Y ++LY +V TK +++ + +E P +
Sbjct: 91 IRSIIGIVPQDTILFNETIKY-NILYGKLDATDEEVIKATKSAQLY-----DFIEALPKK 144
Query: 1014 -DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
D +VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + +
Sbjct: 145 WDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LR 202
Query: 1073 TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
RT++ H+ S + + ++L+ +G
Sbjct: 203 KNRTLIIIAHRLS--TISSAESIILLNKG 229
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
DT+VG++ + +SGG+++R+ L+ K+++ DE ++ LDS T + K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEF 452
+ +I L T + IIL+++G+IV G ++L+
Sbjct: 205 RTLIIIAHRLS----TISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI-----KISGYPKKQETFARV 959
+ G L+G SG GKTT + +AG T G YIE ++ K P K+ A V
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL---KPLRDAL 1016
Q+ PH T+Y+++ + LR + KR V E + L EL KP
Sbjct: 90 F----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRE--- 142
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 143 --------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 69/269 (25%), Positives = 105/269 (39%), Gaps = 58/269 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
DV +KD+S +K +LLGP G GKTT + +AG L E R + L+
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLV------ 70
Query: 243 EQASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
E FVP +R A + Q + TV + + F + V
Sbjct: 71 ---------ADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKV------- 114
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
P EID ++ VA + LGL T + + R
Sbjct: 115 -------------PKQEIDKRVREVA--------------EXLGL-----TELLNRKPRE 142
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ++RV G ++ KV L DE + LD+ + LK++ + VT I +
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY-VTH 201
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNV 449
E D I + ++G++ G D V
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 39/240 (16%)
Query: 916 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKKQETFARVSGYCEQTDIHSPH 972
L+G +GAGK+ ++++AG G+++++G P E R G+ Q PH
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER--RGIGFVPQDYALFPH 84
Query: 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDE---VMELVELKPLRDALVGLPGVNGLSTEQ 1029
+++Y ++ Y LR V+ +R + E + L++ KP R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 1030 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1089
R+R+ +A LV P ++ +DEP S +D + ++M +R R I + D+
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF---VQREFDVPILHVTHDLI 188
Query: 1090 EA---FDELLLMKRGGRVIYAGPLGRESHKLIEYFEAVPGVPKIKDAYNPATWMLEVSNI 1146
EA DE+ +M GR++ G KL E F A G ++ + + +L+VS I
Sbjct: 189 EAAMLADEVAVM-LNGRIVEKG-------KLKELFSAKNG--EVAEFLSARNLLLKVSKI 238
Score = 33.5 bits (75), Expect = 0.91, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGG+++RV LV ++LL+DE + +D T + + L+ + DV I+ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTH 185
Query: 421 PAPETYDLFDDIILISEGQIVYHG 444
E L D++ ++ G+IV G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 65/282 (23%)
Query: 171 LGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQ 230
+G+ + P R V + VS ++ M LLGP G+GKTT++ +AG
Sbjct: 18 VGVEKIYPGGARSV---RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL---------- 64
Query: 231 SNKFLIIRIWKTEQASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGR 289
G + G + + PQ R + Q+ MTV + + F
Sbjct: 65 -----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG-- 111
Query: 290 CLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICA 349
REK+ P E+DA ++ + L+ + L+ A
Sbjct: 112 ---------------LREKR---VPKDEMDARVREL--------------LRFMRLESYA 139
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
+ + +SGGQ++RV L +VLL DE +D+ ++ F++Q+
Sbjct: 140 NRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
M VT + + E ++ D ++++ EG + G + V E
Sbjct: 195 MGVTSVF-VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 25/209 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFA 957
+ VS R G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDE----VMELVELKPLR 1013
R G Q H+T+Y+++ + +++++ DE V EL+ L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFG----------LREKRVPKDEMDARVRELLRFMRLE 136
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
P + LS Q++R+ +A L P ++ DEP + +D + + VR D
Sbjct: 137 SYANRFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194
Query: 1074 -GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
G T V H + E D +L++ G
Sbjct: 195 MGVTSVFVTHDQE-EALEVADRVLVLHEG 222
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 11/215 (5%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPK 951
G +Q L++VS G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 14 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQEL 69
Query: 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ + ++ Q + H L S + L ++D + V EL+ L
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 129
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1070
L D P + LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 130 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105
G T++ H+ +D+ + + + + G +I
Sbjct: 188 RRLGLTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D +SGGQK+RV L KVLL DE ++ LD +TT I + LK + + +T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474
++ + + D + +IS G+++ +D V E F P+ F+Q
Sbjct: 195 LL-ITHEMDVVKRICDCVAVISNGELI---EQDTVSEVFSH-----PKTPLAQKFIQSTL 245
Query: 475 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDL 515
E Y R + P +D V + GQ + + L
Sbjct: 246 HLDIPEDYQER----LQAEPFTDCVPMLRLEFTGQSVDAPL 282
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQ---ET 955
+ +S + G L+G SG GKTT + ++AG + G I K+ P+K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL---KPL 1012
R Q+ PH+T+Y+++ + LR + +R V E++ L EL KP
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP- 137
Query: 1013 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072
LS QR+R+ + +V P + MDEP S LDA+ + MR +
Sbjct: 138 ----------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQ 186
Query: 1073 T--GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
G T + H ++ D + +M RG
Sbjct: 187 RQLGVTTIYVTHD-QVEAMTMGDRIAVMNRG 216
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 58/269 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+V ++++S VK +LLGP G GKTT + +AG L E R + L+
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLV------ 67
Query: 243 EQASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 300
E FVP R A + Q + MTV + + F + V
Sbjct: 68 ---------ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV------- 111
Query: 301 AELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG 360
P EID ++ VA +LLGL T + + R
Sbjct: 112 -------------PRQEIDQRVREVA--------------ELLGL-----TELLNRKPRE 139
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGGQ++RV G +V +V LMDE + LD+ ++ LK++ + VT I +
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTH 198
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNV 449
E + D I +++ G + G D V
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 28/199 (14%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK----Q 953
+++L +S + PG AL+G SG GK+T++ +L + + G+I I G K +
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 954 ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR 1013
T ++++ ++ + ++ E+++Y L SS + + +V E L +
Sbjct: 1150 HTRSQIAIVSQEPTLFD--CSIAENIIYG--LDPSS--------VTMAQVEEAARLANIH 1197
Query: 1014 DALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
+ + LP G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1198 NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 1065 RTVRNTVDTGRTVVCTIHQ 1083
+ + GRT + H+
Sbjct: 1258 EAL-DRAREGRTCIVIAHR 1275
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 41/215 (19%)
Query: 911 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISGYPKKQETFARVSGY 962
G AL+G SG GK+T++ DVL G+ T I+G D++ ++ A VS
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGVDVRDINLEFLRKNVAVVS-- 498
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-------KPLRDA 1015
E L++ + ++ K I +E++ ++ K L +
Sbjct: 499 -------------QEPALFNCTIE--ENISLGKEGITREEMVAACKMANAEKFIKTLPNG 543
Query: 1016 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
L G G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + +
Sbjct: 544 YNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAK 602
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
GRT + H+ S I A +L++ + G+V+ G
Sbjct: 603 GRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 108/276 (39%), Gaps = 67/276 (24%)
Query: 174 LHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNK 233
+H + DV IL+ ++ V + L+G G GK+T++
Sbjct: 421 VHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII------------------- 461
Query: 234 FLIIRIWKTEQASGKITYCG---HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 290
L++R + + GKIT G ++N ++ A +SQ T+ E +
Sbjct: 462 SLLLRYYDVLK--GKITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKEG 518
Query: 291 LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350
+ TR E++A ++ IK P +
Sbjct: 519 I---TREEMVAACKMANAEKFIKTLPN------------------------------GYN 545
Query: 351 TMVGDEMRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408
T+VGD RG +SGGQK+R+ LV K+LL+DE ++ LD+ + + + L +
Sbjct: 546 TLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK 602
Query: 409 IMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHG 444
T+I+A DL II GQ+V G
Sbjct: 603 -GRTTIIIAHRLSTIRNADL---IISCKNGQVVEVG 634
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 65/276 (23%)
Query: 180 KKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRI 239
++ +++ILK +S V+P + L+GP G GK+T+ +AL + ++ L
Sbjct: 1088 ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTV-VALLERFYDTL-------------- 1132
Query: 240 WKTEQASGKITYCGHELNEFVPQRT---CAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 296
G+I G E+ P+ T A +SQ + ++ E + +
Sbjct: 1133 ------GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIY---------- 1175
Query: 297 YELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356
G+ P A ++ A + + + L +T VGD
Sbjct: 1176 --------------GLDPSSVTMAQVEEAARLANIHNFIAE-------LPEGFETRVGD- 1213
Query: 357 MRRG--ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
RG +SGGQK+R+ LV K+LL+DE ++ LD+ + + + L + +
Sbjct: 1214 --RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271
Query: 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
I L D I ++S G I+ G ++
Sbjct: 1272 IAHRLNTVMNA----DCIAVVSNGTIIEKGTHTQLM 1303
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 65/269 (24%)
Query: 859 APRRGMILPFRPLSLTFNQMNYYVDM--------------PAEMKTEGVGEDRLQ----- 899
P R ++ F L+ +F M+ + P E+K + D +
Sbjct: 292 GPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYND 351
Query: 900 ----LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-- 953
+L ++ + G A +G+SG GK+TL++++ + G I I G+ K
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFL 409
Query: 954 -ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFV-------DEVME 1005
+ G +Q +++L+S DT K I + +EV+E
Sbjct: 410 TGSLRNQIGLVQQ-----------DNILFS---------DTVKENILLGRPTATDEEVVE 449
Query: 1006 LVELKPLRDALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
++ D ++ LP G G LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 450 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085
+ +I+ + + + RT + H+ S
Sbjct: 510 LESESIIQEAL-DVLSKDRTTLIVAHRLS 537
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 67/264 (25%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
ILKD++ ++ +G G GK+TL+ NL RF +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLI---------NLIPRFY------------DVT 394
Query: 246 SGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
SG+I GH + +F+ + + Q ++ + TV+E + LG
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENI-----LLG---------- 438
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI- 361
+P + ++A +A D+++ L DT VG+ RG+
Sbjct: 439 ----------RPTATDEEVVEAAKMANAH-----DFIMNLPQ---GYDTEVGE---RGVK 477
Query: 362 -SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
SGGQK+R++ + + +L++DE ++ LD + I + L + D T ++ +
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR 535
Query: 421 PAPETYDLFDDIILISEGQIVYHG 444
+ T+ D I++I G IV G
Sbjct: 536 LSTITHA--DKIVVIENGHIVETG 557
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 47/258 (18%)
Query: 868 FRPLSLTFNQMNYYVDMPAEMKTE------GVGEDRLQLLHSVSGAFRPGVLTALMGVSG 921
FRP + F +++ VD+ E E G +L++ G R G + ++G +G
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV---EPGEIRKGEVIGIVGPNG 392
Query: 922 AGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979
GKTT + +LAG T G +E D+ ++ P Q A G T+YE
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYE-- 436
Query: 980 LYSAWLRLSSDVDTKK--RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1037
L S +D+ K + E+++ + + L D V LS + +R+ IA
Sbjct: 437 -------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAA 484
Query: 1038 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097
L+ + I +DEP++ LD V R +R+ ++ + + I D L++
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 544
Query: 1098 MK----RGGRVIYAGPLG 1111
+ R GR + P+G
Sbjct: 545 FEGEPGRHGRAL--PPMG 560
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKKQETFARVSGY 962
+ G++ ++G +G GKTT + +LAG+ E + I+ + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIF--VDEVMELVELKPLRDALVGLP 1020
+ + +V L L V K R++ VDEV + E+ + L
Sbjct: 175 EIRPVVKPQYVDL-----------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 223
Query: 1021 -GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
++ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 1080 TIHQPSI 1086
H ++
Sbjct: 284 VEHDLAV 290
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQ 398
+LK LG+ D V D +SGG+ +RV L+ A + L+DE S LD
Sbjct: 455 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 399 ICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGF 458
+ + ++ ++ + T +V ++ D D +++ EG+ HG MG
Sbjct: 510 VSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPGRHG------RALPPMGM 561
Query: 459 KCPERKGVADFLQEV--TSKKDQEQYWFRKNQ 488
R+G+ FL V T ++D + R N+
Sbjct: 562 ----REGMNRFLASVGITFRRDPDSGRPRANK 589
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENL 225
IVK + ++GP G GKTT + LAG+L NL
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 145
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 25/173 (14%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKK 952
E+ +L V+ + +PG L A++G +G+GK+TLM+++ G +E D K
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412
Query: 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL 1012
++ +S ++T + S T+ E+L W R D DE++E ++ +
Sbjct: 413 KDLRGHISAVPQETVLFSG--TIKENL---KWGR-EDATD--------DEIVEAAKIAQI 458
Query: 1013 RDALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
D ++ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 57/266 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+L V+ VKP + +LG G+GK+TLM L +L + R R + ++ L +R K +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDE-LDVRTVKLKDL 415
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
G I+ VPQ T + T++E L +
Sbjct: 416 RGHISA--------VPQETVLF---------SGTIKENLKWG------------------ 440
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
+ D D ++A +A + D+++ L D+ V + R SGGQ
Sbjct: 441 -------REDATDDEIVEAAKIAQ-----IHDFIISL---PEGYDSRV-ERGGRNFSGGQ 484
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425
K+R++ LV KVL++D+ ++ +D T +I LK+ +I Q P T
Sbjct: 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT---QKIP-T 540
Query: 426 YDLFDDIILISEGQIVYHGPRDNVLE 451
L D I+++ EG++ G +LE
Sbjct: 541 ALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 11/215 (5%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPK 951
G +Q L++VS G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQEL 92
Query: 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ + ++ Q + H L S + L ++D + V EL+ L
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1070
L D P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 153 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 1071 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105
G T++ H+ +D+ + + + + G +I
Sbjct: 211 RRLGLTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D +SGGQK+RV L KVLL D+ ++ LD +TT I + LK + + +T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474
++ + + D + +IS G+++ +D V E F P+ F+Q
Sbjct: 218 LL-ITHEMDVVKRICDCVAVISNGELI---EQDTVSEVFSH-----PKTPLAQKFIQSTL 268
Query: 475 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDL 515
E Y R + P +D V + GQ + + L
Sbjct: 269 HLDIPEDYQER----LQAEPFTDCVPMLRLEFTGQSVDAPL 305
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 13/222 (5%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIE--GDIKISG 948
ED+ +L +S PG + A+MG +G+GK+TL LAGR+ TGG +E G ++
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 949 YPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAW--LRLSSDVDTKKRKIFVDEVMEL 1006
P+ + + Q + P V+ + L +A +R +T R F D + E
Sbjct: 71 SPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 128 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V + D R+ + H I + D + ++ + GR++ +G
Sbjct: 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSG 228
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
D IL+ +S V P + ++GP G+GK+TL LAG+
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 47/258 (18%)
Query: 868 FRPLSLTFNQMNYYVDMPAEMKTE------GVGEDRLQLLHSVSGAFRPGVLTALMGVSG 921
FRP + F +++ VD+ E E G +L++ G R G + ++G +G
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV---EPGEIRKGEVIGIVGPNG 378
Query: 922 AGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979
GKTT + +LAG T G +E D+ ++ P Q A G T+YE
Sbjct: 379 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYE-- 422
Query: 980 LYSAWLRLSSDVDTKK--RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1037
L S +D+ K + E+++ + + L D V LS + +R+ IA
Sbjct: 423 -------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAA 470
Query: 1038 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097
L+ + I +DEP++ LD V R +R+ ++ + + I D L++
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
Query: 1098 MK----RGGRVIYAGPLG 1111
+ R GR + P+G
Sbjct: 531 FEGEPGRHGRAL--PPMG 546
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKKQETFARVSGY 962
+ G++ ++G +G GKTT + +LAG+ E + I+ + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 160
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIF--VDEVMELVELKPLRDALVGLP 1020
+ + +V L L V K R++ VDEV + E+ + L
Sbjct: 161 EIRPVVKPQYVDL-----------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
Query: 1021 -GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
++ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 1080 TIHQPSI 1086
H ++
Sbjct: 270 VEHDLAV 276
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQ 398
+LK LG+ D V D +SGG+ +RV L+ A + L+DE S LD
Sbjct: 441 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
Query: 399 ICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGF 458
+ + ++ ++ + T +V ++ D D +++ EG+ HG MG
Sbjct: 496 VSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPGRHG------RALPPMGM 547
Query: 459 KCPERKGVADFLQEV--TSKKDQEQYWFRKNQ 488
R+G+ FL V T ++D + R N+
Sbjct: 548 ----REGMNRFLASVGITFRRDPDSGRPRANK 575
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENL 225
IVK + ++GP G GKTT + LAG+L NL
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 131
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 13/222 (5%)
Query: 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIE--GDIKISG 948
ED+ +L +S PG + A+MG +G+GK+TL LAGR+ TGG +E G ++
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 949 YPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAW--LRLSSDVDTKKRKIFVDEVMEL 1006
P+ + + Q + P V+ + L +A +R +T R F D + E
Sbjct: 90 SPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 1007 VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V + D R+ + H I + D + ++ + GR++ +G
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSG 247
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
D IL+ +S V P + ++GP G+GK+TL LAG+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 21/205 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFA 957
L ++ G + A++G +G GK+TL+D+L G R G IE I P + F+
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP---QFFS 76
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
Y S+L + S+ ++T + D + + L L +
Sbjct: 77 SPFAY---------------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1076
LS QR+ + IA + + +I +DEPTS LD IV+ + + + T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRG 1101
VV T HQP+ + A LLL K+
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQN 206
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT 396
DY + + LD T + +SGGQ++ + + K++L+DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 397 FQICKFLKQMVHIMDVTMIVALLQP 421
+ L + ++T++ QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 24/217 (11%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK- 952
G+++ L H VS + G AL+G SG+GK+T+ ++ + G I + G+ +
Sbjct: 353 GKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRD 409
Query: 953 ------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSD-VDTKKRKIFVDEVME 1005
+ FA VS ++H + T+ ++ Y+A + + ++ R+ ME
Sbjct: 410 YKLTNLRRHFALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQA---HAME 461
Query: 1006 LVELKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
+E P D ++G G + LS QR+R+ IA L+ + ++ +DE TS LD + +
Sbjct: 462 FIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 1065 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+ + + +TV+ H+ S E DE+L++ G
Sbjct: 521 AAL-DELQKNKTVLVIAHRLS--TIEQADEILVVDEG 554
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHI 409
DT++G E +SGGQ++RV L+ A VL++DE ++ LD+ + I L ++
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 410 MDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
V +I L T + D+I+++ EG+I+ G ++L
Sbjct: 530 KTVLVIAHRL----STIEQADEILVVDEGEIIERGRHADLL 566
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET 955
D + L VS PG AL+G SGAGK+T++ +L + G I+I G Q T
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVT 122
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
A + + V +++L++ ++ ++ + DEV + + DA
Sbjct: 123 QASLRSHI--------GVVPQDTVLFNDT--IADNIRYGRVTAGNDEVEAAAQAAGIHDA 172
Query: 1016 LVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066
++ P G G LS +++R+ IA ++ P II +DE TS LD + +
Sbjct: 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232
Query: 1067 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101
+ V RT + H+ S + D++L++K G
Sbjct: 233 LAK-VCANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 63/269 (23%)
Query: 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQ 244
+ L+DVS V P + L+GP GAGK+T+ LR+ F +F I
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTI-----------LRLLF---RFYDI------- 106
Query: 245 ASGKITYCGHELNEFVPQRTCAYISQHDLH-HGEMTVRETLDFSGRCLGVGTRYELLAEL 303
+SG I G ++++ ++Q L H + ++T+ F+ + RY +
Sbjct: 107 SSGCIRIDGQDISQ---------VTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-- 154
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI-- 361
+ E++A +A + + Y T VG+ RG+
Sbjct: 155 ---------AGNDEVEAAAQAAGIHDAIMAFPEGY-----------RTQVGE---RGLKL 191
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
SGG+K+RV ++ A ++L+DE ++ LD+S I L ++ ++ L
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL-- 249
Query: 422 APETYDLFDDIILISEGQIVYHGPRDNVL 450
T D I++I +G IV G + +L
Sbjct: 250 --STVVNADQILVIKDGCIVERGRHEALL 276
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 894 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPK 951
G +Q L++VS G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQEL 92
Query: 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ + ++ Q H L S + L ++D + V EL+ L
Sbjct: 93 TTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069
L D P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 153 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 355 DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414
D +SGGQK+RV L KVLL D+ ++ LD +TT I + LK + + +T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERKGVADFLQEVT 474
++ + + D + +IS G+++ +D V E F P+ F+Q
Sbjct: 218 LL-ITHEXDVVKRICDCVAVISNGELI---EQDTVSEVFSH-----PKTPLAQKFIQSTL 268
Query: 475 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQLASDL 515
E Y R + P +D V + GQ + + L
Sbjct: 269 HLDIPEDYQER----LQAEPFTDCVPXLRLEFTGQSVDAPL 305
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 46/234 (19%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
+Q+L ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEP----- 82
Query: 956 FARVSGYCEQTDIHSPHVTL----YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
Q D H H + E LL+ R + R ++E+ +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 1012 LRDALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
D + G P N LS QR+ + +A L+ P ++ +D+ TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 1063 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1102
V R + + + RTV+ HQ S+ + E L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 54/269 (20%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+VQ+L+ ++ + P ++T L+GP G+GK+T+ L +NL
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL-----QNLY---------------- 69
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+ GK+ G L ++ H LH + VG L
Sbjct: 70 QPTGGKVLLDGEPLVQY---------DHHYLHT-------------QVAAVGQEPLLFGR 107
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
R G+ P ++ + AVA+ ++ G DT VG E +S
Sbjct: 108 SFRENIAYGLTRTPTMEE-ITAVAMESGAHDFIS-------GFPQGYDTEVG-ETGNQLS 158
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQ++ V L+ ++L++D+ ++ LD+ ++ + L + T+++ Q +
Sbjct: 159 GGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS 218
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ I+ + EG + G ++E
Sbjct: 219 --LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 120/275 (43%), Gaps = 66/275 (24%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
RDV L++++ + + L+G G+GK+T+ LI R +
Sbjct: 354 RDVPALRNINLKIPAGKTVALVGRSGSGKSTI-------------------ASLITRFYD 394
Query: 242 TEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
++ G+I GH+L E+ + A +SQ ++H TV + ++ R E
Sbjct: 395 IDE--GEILMDGHDLREYTLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE 443
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
+ SR + ++ + + D++ K+ D DT++G+
Sbjct: 444 ---QYSREQIEEAAR------------------MAYAMDFINKM---DNGLDTVIGEN-- 477
Query: 359 RGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
G+ SGGQ++R+ L+ + +L++DE ++ LD+ + I L ++ +I
Sbjct: 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
L T + D+I+++ +G IV G +++LE
Sbjct: 537 HRL----STIEKADEIVVVEDGVIVERGTHNDLLE 567
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 100/204 (49%), Gaps = 11/204 (5%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +++ G AL+G SG+GK+T+ ++ + EG+I + G+ ++ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 961 GYCE--QTDIHSPHVTLYESLLYSAWLRLSSD-VDTKKRKIFVDEVMELVELKPLRDALV 1017
++H + T+ ++ Y+ + S + ++ R + + + ++ D ++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVI 474
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + + RT
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTS 532
Query: 1078 VCTIHQPSIDIFEAFDELLLMKRG 1101
+ H+ S E DE+++++ G
Sbjct: 533 LVIAHRLS--TIEKADEIVVVEDG 554
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 7/218 (3%)
Query: 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKK 952
D +L V+ G + ALMG +GAGK+TL +LAG G+I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 953 QETFARVSGYCE-QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
+ AR + Q + P VT+ L + +L +V + F +V + +EL
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLD 130
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
++ + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
+ H I + D++ +M G V GP
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 111/286 (38%), Gaps = 65/286 (22%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
ILK V+ +V + L+GP GAGK+TL LAG ++ + R
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG-----------DPEYTVER------- 59
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
G+I G + E P ++ L + + ++ G + R L A+L R
Sbjct: 60 -GEILLDGENILELSPDER----ARKGLF---LAFQYPVEVPGVTIANFLRLALQAKLGR 111
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
V VA E L+LL D ++ + + G SGG+
Sbjct: 112 E------------------VGVA--EFWTKVKKALELLDWD---ESYLSRYLNEGFSGGE 148
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM-------VHIMDVTMIVAL 418
KKR ++LV ++DE +GLD + + + M + I I+
Sbjct: 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNY 208
Query: 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGFKCPERK 464
+QP D + ++ +G++V G + LE E G++ + K
Sbjct: 209 IQP--------DKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 19/211 (9%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQET 955
+ L +VS G + G +G+GK+TL+ ++AG IE GD+ G KK
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 77
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV--ELKPLR 1013
R G Q + E + + + + V + ME V + +
Sbjct: 78 IRRNIGIAFQ---YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK 134
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D + LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 135 DRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 189
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
G+TV+ H + D ++++++G +V
Sbjct: 190 GKTVILISHDIET-VINHVDRVVVLEKGKKV 219
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGG+K+RV ++V +L++DE GLD + + +++ + ++++
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 198
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQ 455
+ D ++++ +G+ V+ G R +EF E+
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 19/211 (9%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKKQET 955
+ L +VS G + G +G+GK+TL+ ++AG IE GD+ G KK
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 75
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELV--ELKPLR 1013
R G Q + E + + + + V + ME V + +
Sbjct: 76 IRRNIGIAFQ---YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK 132
Query: 1014 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
D + LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 133 DRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104
G+TV+ H + D ++++++G +V
Sbjct: 188 GKTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGG+K+RV ++V +L++DE GLD + + +++ + ++++
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 196
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEFFEQ 455
+ D ++++ +G+ V+ G R +EF E+
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 228
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 29/229 (12%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKK 952
+ L VS + G +T ++G +G+GK+TL++V+ G + G Y E + P +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 953 ------QETFARVSGYCEQTDIHS-------PHVTLYESLLYSAWLRLSSDVDTKKRKIF 999
TF E T + + P + SL Y W+ ++ K KI
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI- 137
Query: 1000 VDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
+E ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 138 ----LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
A + V G T + H+ +DI + + L + G++I G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 45/210 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWK 241
+ + L VS V +TL++GP G+GK+TL+ + G L + RV F++
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI------- 71
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
T + ++ + G PQ EMTV E L C G
Sbjct: 72 TNKEPAELYHYGIVRTFQTPQPL-----------KEMTVLENLLIGEICPG--------- 111
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
P F K +E +L+ L L D G+ +
Sbjct: 112 ------------ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----L 154
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGL 391
SGGQ K V G L+ K+++MDE G+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 26/217 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +SG R G + L+G +GAGK+TL+ AG +G +G I+ +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 961 GYCEQTDIHSPHVTLYESLLYSA--WLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
+H +++ ++ ++ W L+ K R +++V + L D +G
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----DDKLG 121
Query: 1019 LPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1071
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + +
Sbjct: 122 -RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G +V + H + + A LL +GG+ + +G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRF 229
L +SG V+ + L+GP GAGK+TL+ AG ++F
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQF 58
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 884 MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 943
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 944 IKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSA--WLRLSSDVDTKKRKIFVD 1001
I+ +G P + + +++ +H +++ ++ ++ W L+ K R ++
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSG 1054
+V + L D +G N LS + +R+ +A ++ ANP+ ++ +D+P +
Sbjct: 109 DVAGALAL----DDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNS 163
Query: 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
LD + + + + G +V + H + + A LL +GG+++ +G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
L +SG V+ + L+GP GAGK+TL+ +AG
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 26/217 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +SG R G + L+G +GAGK+TL+ AG +G +G I+ +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 961 GYCEQTDIHSPHVTLYESLLYSA--WLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVG 1018
+H +++ ++ ++ W L+ K R +++V + L D +G
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----DDKLG 121
Query: 1019 LPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1071
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + +
Sbjct: 122 -RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G +V + H + + A LL +GG+ + +G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRF 229
L +SG V+ + L+GP GAGK+TL+ AG ++F
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQF 58
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 110/234 (47%), Gaps = 28/234 (11%)
Query: 884 MPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 943
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 944 IKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSA--WLRLSSDVDTKKRKIFVD 1001
I+ +G P + + +++ +H +++ ++ ++ W L+ K R ++
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 1002 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSG 1054
+V + L D +G N LS + +R+ +A ++ ANP+ ++ +D+P
Sbjct: 109 DVAGALAL----DDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCS 163
Query: 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
LD + + + + G +V + H + + A LL +GG+++ +G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
L +SG V+ + L+GP GAGK+TL+ +AG
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKK---- 952
L VS + G +T ++G +G+GK+TL++V+ G + G Y E + P +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 953 --QETFARVSGYCEQTDIH-------SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV 1003
TF E T + +P + SL Y W+ ++ K KI
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI----- 137
Query: 1004 MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1063
+E ++L L D G LS Q K + I L+ NP +I MD+P +G+ A +
Sbjct: 138 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDI 192
Query: 1064 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
V G T + H+ +DI + + L + G++I G
Sbjct: 193 FNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 45/206 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWKTEQA 245
L VS V +TL++GP G+GK+TL+ + G L + RV F++ T +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI-------TNKE 75
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
++ + G PQ EMTV E L L+ E++
Sbjct: 76 PAELYHYGIVRTFQTPQPLK-----------EMTVLENL--------------LIGEINP 110
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
E P F K +E +L+ L L D G+ +SGGQ
Sbjct: 111 GE-------SPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQ 158
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGL 391
K V G L+ K+++MD+ G+
Sbjct: 159 MKLVEIGRALMTNPKMIVMDQPIAGV 184
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 29/229 (12%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKK 952
+ L VS + G +T ++G +G+GK+TL++V+ G + G Y E + P +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 953 ------QETFARVSGYCEQTDIH-------SPHVTLYESLLYSAWLRLSSDVDTKKRKIF 999
TF E T + +P + SL Y W+ ++ K KI
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI- 137
Query: 1000 VDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059
+E ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 138 ----LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
A + V G T + H+ +DI + + L + G++I G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 45/210 (21%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWK 241
+ + L VS V +TL++GP G+GK+TL+ + G L + RV F++
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI------- 71
Query: 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 301
T + ++ + G PQ EMTV E L L+
Sbjct: 72 TNKEPAELYHYGIVRTFQTPQPLK-----------EMTVLENL--------------LIG 106
Query: 302 ELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGI 361
E++ E P F K +E +L+ L L D G+ +
Sbjct: 107 EINPGE-------SPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----L 154
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGL 391
SGGQ K V G L+ K+++MDE G+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQM 406
+SGGQ++RV+ L VLL DE ++ LD ++ + ++Q+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKKQETF 956
+L+ +S + PG + ++G SG GKTTL+ LAG + G+I +SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 957 ARVS--GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
R GY Q + PH+T+Y ++ Y + T + + ++ ++EL + L
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELTGISELAG 133
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV--- 1071
+ LS Q++R +A L +P +I +DEP S LD + + R +R +
Sbjct: 134 RY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAA 184
Query: 1072 --DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109
G++ V H + + D + +MK+G + A P
Sbjct: 185 LRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASP 223
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 167 IESALGLLHLVPSKKRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
+ +AL + HL S + + +L D+S + P + ++G G GKTTL+ LAG
Sbjct: 1 MTAALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 28/198 (14%)
Query: 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKKQETFARVSGY 962
+G + G + ++G +G GKTT +L G T G + + +I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
+Q ++ ++L S+W F +EV + + L L ++ V
Sbjct: 347 VQQYLENASK----DALSTSSW--------------FFEEVTKRLNLHRLLES-----NV 383
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI- 1081
N LS + ++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 1082 HQPSIDIFEAFDELLLMK 1099
H SI + A D +++ K
Sbjct: 444 HDLSIHDYIA-DRIIVFK 460
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSG---YCEQ 965
+ + ++G +G GKTT++ +LAG + + + K+ K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 966 TDIHSPHVTLYESLLY----SAWLR-----LSSDVDTKKRKIFVDEVMELVELKPL--RD 1014
+++S + + + Y S +L+ + + +D + +K DEV EL+ + L +D
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1074
A N LS +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 136 A-------NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK 188
Query: 1075 RTVVC 1079
+V
Sbjct: 189 YVIVV 193
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG----YPKKQE 954
++L +S + + G +++G SG+GK+TL+ +L EG + + G Y ++E
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 955 TF---ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
R G+ Q P +T E+++ + K+R ++ L EL
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSEL-G 129
Query: 1012 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071
L D L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1072 DTGRTVVCTIHQ 1083
+ G ++V H+
Sbjct: 188 EGGTSIVMVTHE 199
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 337 DYVLKLLGLDICADTMVGDEMRRG---ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDS 393
+Y+L LGL GD++ R +SGG+++RV L +L DE + LDS
Sbjct: 122 EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 394 STTFQICK-FLK 404
+ T ++ FLK
Sbjct: 174 ANTKRVMDIFLK 185
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 46/234 (19%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
+Q+L ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEP----- 82
Query: 956 FARVSGYCEQTDIHSPHVTL----YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
Q D H H + E LL+ R + R ++E+ +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 1012 LRDALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
D + G P N LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1063 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1102
V R + + + RTV+ Q S+ + E L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 105/269 (39%), Gaps = 54/269 (20%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+VQ+L+ ++ + P ++T L+GP G+GK+T+ L +NL
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL-----QNLY---------------- 69
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+ GK+ G L ++ H LH + VG L
Sbjct: 70 QPTGGKVLLDGEPLVQY---------DHHYLHT-------------QVAAVGQEPLLFGR 107
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
R G+ P ++ + AVA+ ++ G DT VG E +S
Sbjct: 108 SFRENIAYGLTRTPTMEE-ITAVAMESGAHDFIS-------GFPQGYDTEVG-ETGNQLS 158
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GGQ++ V L+ ++L++D ++ LD+ ++ + L + T+++ Q +
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ I+ + EG + G ++E
Sbjct: 219 --LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 41/242 (16%)
Query: 868 FRPLSLTFNQMNYYVDMPAEMKT------EGVGEDRLQLLHSVSGAFRPGVLTALMGVSG 921
FRP + F + V++ E + G RL++ G + G + ++G +G
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEV---EPGEIKKGEVIGIVGPNG 322
Query: 922 AGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979
GKTT + LAG T G IE D+ ++ P+ Y + YE
Sbjct: 323 IGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKAD---------YEGT 363
Query: 980 LYSAWLRLSSDVDTKK--RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1037
+Y L S +D K + E+++ + + L D VN LS + +R+ IA
Sbjct: 364 VYE----LLSKIDASKLNSNFYKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIAA 414
Query: 1038 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097
L+ + I +DEP++ LD V R +R+ + + + I D L +
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXV 474
Query: 1098 MK 1099
+
Sbjct: 475 FE 476
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI------EGDIKISGYPKKQETFARVSGY 962
+ G + ++G +G GK+T + +LAG+ +G I+ + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 963 CEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGV 1022
+ + +V L + + L D + ++EV++ +EL+ + + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLER-----EI 156
Query: 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 1083 QPSI 1086
++
Sbjct: 217 DLAV 220
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 308 KQQGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
K Q IK D E + + + + ++ +LK LG+ D V + +SGG+
Sbjct: 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE-----LSGGE 406
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
+RV L+ A + L+DE S LD + + ++ + + T +V
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALV 457
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L +++ G AL+G SG+GK+T+ ++ + EG I + G+ ++ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 961 GYCE--QTDIHSPHVTLYESLLYSAWLRLSSD-VDTKKRKIFVDEVMELVELKPLRDALV 1017
++H + T+ ++ Y+ S + ++ R + + + ++ D ++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KMDNGLDTII 474
Query: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TG 1074
G GV LS QR+R+ IA L+ + I+ +DE TS LD + R ++ +D
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKN 529
Query: 1075 RTVVCTIHQPSIDIFEAFDELLLMKRG 1101
RT + H+ S E DE+++++ G
Sbjct: 530 RTSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 66/274 (24%)
Query: 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWK 241
R+V L++++ + + L+G G+GK+T+ LI R +
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTI-------------------ASLITRFYD 394
Query: 242 TEQASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 298
++ G I GH+L E+ + A +SQ ++H TV + ++ R E
Sbjct: 395 IDE--GHILMDGHDLREYTLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE 443
Query: 299 LLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358
E SR + ++ + + D++ K+ D DT++G+
Sbjct: 444 ---EYSREQIEEAAR------------------MAYAMDFINKM---DNGLDTIIGEN-- 477
Query: 359 RGI--SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
G+ SGGQ++R+ L+ + +L++DE ++ LD+ + I L ++ +I
Sbjct: 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
L T + D+I+++ +G IV G +L
Sbjct: 537 HRL----STIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 64/274 (23%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
DV +L+ ++ ++P +T L+GP G+GK+T+ L +NL
Sbjct: 29 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTV-----AALLQNL----------------Y 67
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+ G++ G L PQ Y LH V + GR L Y
Sbjct: 68 QPTGGQLLLDGKPL----PQYEHRY-----LHRQVAAVGQEPQVFGRSLQENIAY----- 113
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
G+ P ++ + A AV S ++ GL DT V DE +S
Sbjct: 114 --------GLTQKPTMEE-ITAAAVKSGAHSFIS-------GLPQGYDTEV-DEAGSQLS 156
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH-----IMDVTMIVA 417
GGQ++ V L+ VL++D+ ++ LD+++ Q+ + L + ++ +T ++
Sbjct: 157 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 216
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451
L++ A D I+ + G I G ++E
Sbjct: 217 LVEQA-------DHILFLEGGAIREGGTHQQLME 243
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 25/214 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETFA 957
+L ++ RPG +TAL+G +G+GK+T+ +L + TGG + D K + +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV 1017
+V+ ++ + +L E++ Y +K ++E+ +
Sbjct: 92 QVAAVGQEPQVFGR--SLQENIAYGL-----------TQKPTMEEITAAAVKSGAHSFIS 138
Query: 1018 GLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
GLP + LS QR+ + +A L+ P ++ +D+ TS LDA + V + +
Sbjct: 139 GLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLY 198
Query: 1069 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102
+ + V I Q + + E D +L ++ G
Sbjct: 199 ESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 46/234 (19%)
Query: 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQET 955
+Q+L ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEP----- 82
Query: 956 FARVSGYCEQTDIHSPHVTL----YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP 1011
Q D H H + E LL+ R + R ++E+ +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 1012 LRDALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062
D + G P N L+ QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1063 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1102
V R + + + RTV+ Q S+ + E L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 104/269 (38%), Gaps = 54/269 (20%)
Query: 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242
+VQ+L+ ++ + P ++T L+GP G+GK+T+ L +NL
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTV-----AALLQNLY---------------- 69
Query: 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
+ GK+ G L ++ H LH + VG L
Sbjct: 70 QPTGGKVLLDGEPLVQY---------DHHYLHT-------------QVAAVGQEPLLFGR 107
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
R G+ P ++ + AVA+ ++ G DT VG E ++
Sbjct: 108 SFRENIAYGLTRTPTMEE-ITAVAMESGAHDFIS-------GFPQGYDTEVG-ETGNQLA 158
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GQ++ V L+ ++L++D ++ LD+ ++ + L + T+++ Q +
Sbjct: 159 VGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
+ I+ + EG + G ++E
Sbjct: 219 --LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 911 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD 967
G + L+G +GAGKTT + +AG + G I I+ P ++ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 968 IHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLS 1026
I P +T+YE+L A+ R D + KR ++ + L P L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR--KDKEGIKR-----DLEWIFSLFPRLKERLKQLGGT--LS 141
Query: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KKQET 955
+L ++ +PG AL+G +G+GKTT++++L + G I + G K+
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 956 FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA 1015
+ + + T + S T+ E+L Y ++ + D +K L +
Sbjct: 428 RSSIGIVLQDTILFS--TTVKENLKYGNPGATDEEIKEAAKLTHSDHF-----IKHLPEG 480
Query: 1016 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
+ NG LS QR+ L I +ANP I+ +DE TS +D + + + ++
Sbjct: 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME- 539
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAG 1108
G+T + H+ ++ + D L+++ R G ++ G
Sbjct: 540 GKTSIIIAHR--LNTIKNAD-LIIVLRDGEIVEMG 571
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 64/275 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD++ +KP + L+GP G+GKTT++ NL +RF +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIV---------NLLMRFY------------DVD 408
Query: 246 SGKITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 303
G+I G ++ + R+ I D TV+E L + G E + E
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP----GATDEEIKEA 464
Query: 304 SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISG 363
++ D F+K + G ET L + G+++ S
Sbjct: 465 AKLTHS---------DHFIKHLP-EGYETVLTDN----------------GEDL----SQ 494
Query: 364 GQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423
GQ++ + + K+L++DE ++ +D+ T I + +++ ++I+A
Sbjct: 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTI 553
Query: 424 ETYDLFDDIILISEGQIVYHGPRDNVLEFFEQMGF 458
+ DL II++ +G+IV G D E ++ GF
Sbjct: 554 KNADL---IIVLRDGEIVEMGKHD---ELIQKRGF 582
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETF 956
+L ++S + PG L+G +G+GK+TL+ EG+I+I G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL 1016
+ G Q + ++S R + D + E+ ++ + LR +
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSD---QEIWKVADEVGLRSVI 138
Query: 1017 VGLPG------VNG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
PG V+G LS ++ + +A +++ I+ +DEP++ LD I+ RT+
Sbjct: 139 EQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
Query: 1068 RNTVDTGRTVVC 1079
+ ++C
Sbjct: 199 KQAFADCTVILC 210
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+S G K+ + ++ AK+LL+DE S LD T I + LKQ D T+I L +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA--FADCTVI--LCE 211
Query: 421 PAPETYDLFDDIILISEGQI--------VYHGPRDNVLEFF 453
E D ++I E ++ +YH P D + F
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 32/256 (12%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGYPKKQET 955
L++ VS G + A++G +GAGK+TL+ +L G + + E G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 956 FARVSGYCEQ-TDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD 1014
AR Q +++ P + A S D ++ + + + L + RD
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ----RD 138
Query: 1015 ALVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVR 1068
V LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 139 YRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 1069 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP---LGRESHKLIEYFEAV 1124
T V C +H ++ A D ++L+ +G V P L E+ L ++++A
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAET--LTQWYQAD 248
Query: 1125 PGVPKIKDAYNPATWM 1140
GV + ++ P ++
Sbjct: 249 LGVSRHPESALPQIYL 264
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 104/274 (37%), Gaps = 72/274 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
++ DVS + M ++GP GAGK+TL+ L G L +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL---------------------SPS 64
Query: 246 SGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 302
G+ G LN + P+ RT A + Q+ +V E + GR G++
Sbjct: 65 HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQM-GRAPYGGSQ------ 117
Query: 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGIS 362
R+ QQ + A +A+A + DY R +S
Sbjct: 118 -DRQALQQ-------VMAQTDCLALAQR------DY--------------------RVLS 143
Query: 363 GGQKKRVTTGEMLVG------AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416
GG+++RV +L + L +DE ++ LD + L+Q+ + +
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVC 202
Query: 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+L D I+L+++G++V G + VL
Sbjct: 203 CVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKKQE 954
L ++S G ++G +GAGKT ++++AG G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 955 TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSD----VDTKKRKIFVDEVMELVELK 1010
+ Q PH+ + ++L + ++ D +DT + ++ L++
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL----KIEHLLDRN 124
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070
PL LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 125 PL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------T 162
Query: 1071 VDTGRTVVCTIHQ 1083
+ R ++ +H+
Sbjct: 163 QENAREMLSVLHK 175
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 71/269 (26%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQAS 246
L ++S V+ ++LGP GAGKT + +AG F + S
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--------------FHV-------PDS 54
Query: 247 GKITYCGHELNEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
G+I G ++ + P++ A++ Q+ M V++ L+F R
Sbjct: 55 GRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM--------------- 99
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRG---IS 362
+ IK DP K V LD D + + R +S
Sbjct: 100 ----KKIK-DP------KRV-------------------LDTARDLKIEHLLDRNPLTLS 129
Query: 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422
GG+++RV LV K+LL+DE + LD T + L ++H + ++ +
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQ 188
Query: 423 PETYDLFDDIILISEGQIVYHGPRDNVLE 451
E + D I ++ +G+++ G + + E
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 14/188 (7%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKKQETF 956
++L +S G + L+G +GAGKTT + +++ + + G + + ++
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--TVFGKNVVEEPHEV 86
Query: 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-KPLRDA 1015
++ Y + ++ E L + A SS + ++ V+ E+ L + ++D
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE---MVERATEIAGLGEKIKDR 143
Query: 1016 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1075
V+ S ++L IA L+ NP + +DEPTSGLD A V + ++ G
Sbjct: 144 ------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 1076 TVVCTIHQ 1083
T++ + H
Sbjct: 198 TILVSSHN 205
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421
S G +++ L+ ++ ++DE ++GLD ++ K LKQ +T++V+
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVS-SHN 205
Query: 422 APETYDLFDDIILISEGQIVYHGPRD---------NVLEFFEQMGFKCPE 462
E L D I LI G IV G + N+ E FE++ KC E
Sbjct: 206 MLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV-VKCSE 254
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 51/206 (24%)
Query: 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGY----------------------------I 940
RPG + L+G +G GK+T + +LAG++ +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 941 EGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFV 1000
E DIK P+ + R I P + E L LR+ + KR I +
Sbjct: 161 EDDIKAIIKPQYVDNIPRA--------IKGPVQKVGELL----KLRMEKSPEDVKRYIKI 208
Query: 1001 DEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060
++ +++ RD + LS + +R I + V + DEP+S LD +
Sbjct: 209 LQLENVLK----RD-------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 1061 AIVMRTVRNTVDTGRTVVCTIHQPSI 1086
+ +R+ + + V+C H S+
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSV 283
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L+ G F + +MG +G GKTTL+ +LAG + K++ K Q+ +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
G Q L + K R F++ + +KPLR +
Sbjct: 427 PGTVRQ-------------LFFK-----------KIRGQFLNPQFQTDVVKPLRIDDIID 462
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKK----QE 954
+L +S G L G++GAGKTTL+++L + G + + G P K E
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAE 93
Query: 955 TFARVSGYCEQTDIH--SPHVTLYESLLYSAW--LRLSSDVDTKKRKIFVDEVMELVELK 1010
T + G+ + + + + ++ A+ + + D+D + R ++++LV
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXS 152
Query: 1011 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056
+G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 153 AKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 56/273 (20%), Positives = 103/273 (37%), Gaps = 55/273 (20%)
Query: 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIW 240
K+ ILK +S + +L G GAGKTTL+ N+ ++ + ++
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLL---------NILNAYEPATSGTVNLF 81
Query: 241 KTEQASGKITYCGHELNEFVPQRTCAYISQ---HDLHHGEMTVRETLDFSGRCLGVGTRY 297
+ GK+ Y + + + ++S GE + + + + +GV Y
Sbjct: 82 G--KXPGKVGYSAETVRQHI-----GFVSHSLLEKFQEGERVIDVVISGAFKSIGV---Y 131
Query: 298 ELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEM 357
+ + + R E Q +LKL+G A +G
Sbjct: 132 QDIDDEIRNEAHQ----------------------------LLKLVGXSAKAQQYIG--- 160
Query: 358 RRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417
+S G+K+RV L G +VL++DE + GLD + L + +
Sbjct: 161 --YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIY 218
Query: 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450
+ E F I+L+ +GQ + G +++L
Sbjct: 219 VTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS 960
L+ ++ + G L A++G G GK++L+ L +EG + I G V+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---------SVA 69
Query: 961 GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL-VGL 1019
+Q I + +L E++L+ L + + I ++ +E+ P D +G
Sbjct: 70 YVPQQAWIQND--SLRENILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEIGE 123
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1067
GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 124 KGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++++ +S D + I ++ E + +D +V
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 198 VTSK--MEHLKKADKILILHEGSSYFYG 223
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 80/264 (30%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + K +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS------EGKI---------KH 79
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
SG+I++C + + +P T++E + F G Y+ E
Sbjct: 80 SGRISFC-SQFSWIMPG----------------TIKENIIF-------GVSYD---EYRY 112
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
R + + + +I F + D +V E +SGGQ
Sbjct: 113 RSVIKACQLEEDISKFAE-------------------------KDNIVLGEGGITLSGGQ 147
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI-----CKFLKQMVHIMDVTMIVALLQ 420
+ R++ + A + L+D LD T +I CK + I+ VT + L+
Sbjct: 148 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLK 206
Query: 421 PAPETYDLFDDIILISEGQIVYHG 444
A D I+++ EG ++G
Sbjct: 207 KA-------DKILILHEGSSYFYG 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++++ +S D + I ++ E + +D +V
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 186 VTSK--MEHLKKADKILILHEGSSYFYG 211
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 80/264 (30%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + K +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS------EGKI---------KH 67
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 305
SG+I++C + + +P T++E + F G Y+ E
Sbjct: 68 SGRISFC-SQFSWIMPG----------------TIKENIIF-------GVSYD---EYRY 100
Query: 306 REKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQ 365
R + + + +I F + D +V E +SGGQ
Sbjct: 101 RSVIKACQLEEDISKFAE-------------------------KDNIVLGEGGITLSGGQ 135
Query: 366 KKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI-----CKFLKQMVHIMDVTMIVALLQ 420
+ R++ + A + L+D LD T +I CK + I+ VT + L+
Sbjct: 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLK 194
Query: 421 PAPETYDLFDDIILISEGQIVYHG 444
A D I+++ EG ++G
Sbjct: 195 KA-------DKILILHEGSSYFYG 211
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV---MELVELKPLRDAL 1016
S +C Q P T+ E++++ D + K V ++ + + +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++ + +S D + I ++ E + +D +V
Sbjct: 102 S-FCSQNSWIMPG-TIKENI-----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 83/265 (31%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL---------------------EPS 91
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
GKI + G ++ SQ+ + G T++E + +G Y+ E
Sbjct: 92 EGKIKHSGR----------ISFCSQNSWIMPG--TIKENI--------IGVSYD---EYR 128
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
R + + + +I F + D +V E +SGG
Sbjct: 129 YRSVIKACQLEEDISKFAE-------------------------KDNIVLGEGGITLSGG 163
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI-----CKFLKQMVHIMDVTMIVALL 419
Q+ R++ + A + L+D LD T +I CK + I+ VT + L
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHL 222
Query: 420 QPAPETYDLFDDIILISEGQIVYHG 444
+ A D I+++ EG ++G
Sbjct: 223 KKA-------DKILILHEGSSYFYG 240
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV---MELVELKPLRDAL 1016
S +C Q P T+ E++++ D + K V ++ + + +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 1017 VGLPGVNGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYAG 1108
G TV+ H ++D+ + D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 797 IGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRAS--------GNEVEGTQMTVRS 848
IG N IA L + +G++ VVE D D A+ G + G ++
Sbjct: 535 IGLHQRDNDRLIATLKSMRDLGNT-LIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAG 593
Query: 849 STEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKT------EGVGEDRLQLLH 902
+ E V + N+ L+ + ++ +PAE + E VG R L
Sbjct: 594 TPEEVMNDPNS-----------LTGQYLSGKKFIPIPAERRRPDGRWLEVVGA-REHNLK 641
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMD 929
+VS G A+ GVSG+GK+TL++
Sbjct: 642 NVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 1017 VGLPGVNGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYAG 1108
G TV+ H ++D+ + D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 27/147 (18%)
Query: 797 IGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRAS--------GNEVEGTQMTVRS 848
IG N IA L +G++ VVE D D A+ G + G ++
Sbjct: 535 IGLHQRDNDRLIATLKSXRDLGNT-LIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAG 593
Query: 849 STEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKT------EGVGEDRLQLLH 902
+ E V + N+ L+ + ++ +PAE + E VG R L
Sbjct: 594 TPEEVXNDPNS-----------LTGQYLSGKKFIPIPAERRRPDGRWLEVVGA-REHNLK 641
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMD 929
+VS G A+ GVSG+GK+TL++
Sbjct: 642 NVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++ + +S D + I ++ E + +D +V
Sbjct: 102 S-FCSQNSWIMPG-TIKENI-----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 83/265 (31%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQA 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L E +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL---------------------EPS 91
Query: 246 SGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELS 304
GKI + G ++ SQ+ + G T++E + +G Y+ E
Sbjct: 92 EGKIKHSGR----------ISFCSQNSWIMPG--TIKENI--------IGVSYD---EYR 128
Query: 305 RREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG 364
R + + + +I F + D +V E +SGG
Sbjct: 129 YRSVIKACQLEEDISKFAE-------------------------KDNIVLGEGGITLSGG 163
Query: 365 QKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI-----CKFLKQMVHIMDVTMIVALL 419
Q+ R++ + A + L+D LD T +I CK + I+ VT + L
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHL 222
Query: 420 QPAPETYDLFDDIILISEGQIVYHG 444
+ A D I+++ EG ++G
Sbjct: 223 KKA-------DKILILHEGSSYFYG 240
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 26/142 (18%)
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974
+ G +G GK+TLM +A + + G+P ++E + Y E DI H
Sbjct: 465 GICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSD 510
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLT 1034
S+L + S V TK+ D+++E D ++ +P ++ LS + +L
Sbjct: 511 T--SVLDFVF---ESGVGTKE--AIKDKLIEF----GFTDEMIAMP-ISALSGGWKMKLA 558
Query: 1035 IAVELVANPSIIFMDEPTSGLD 1056
+A ++ N I+ +DEPT+ LD
Sbjct: 559 LARAVLRNADILLLDEPTNHLD 580
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 980 LYSAWLRLSSDVDTKK-------RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKR 1032
L + ++ ++VD K+ R + E+ E + L +V + GLS Q+ +
Sbjct: 850 LVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVK 909
Query: 1033 LTIAVELVANPSIIFMDEPTSGLD 1056
L +A P +I +DEPT+ LD
Sbjct: 910 LVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 915 ALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIKISGYPKKQETFARVSGYCEQT 966
A++G +GAGK+TL++VL G T G Y + +I+ KQ FA + + ++T
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDKT 756
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 9/37 (24%)
Query: 202 LLGPPGAGKTTLMLALAGKL---------HENLRVRF 229
++GP GAGK+TL+ L G+L HEN R+ +
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAY 740
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 317 EIDAFMKAVAVAGQETSLVTDYV---LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGE 373
E+D MK +GQ L + +LGLD +V RG+SGGQK ++
Sbjct: 860 EVD--MKEALASGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAA 914
Query: 374 MLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDII 433
++++DE + LD + + K LK+ ++ + A T +L +++
Sbjct: 915 GTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNLTEEVW 969
Query: 434 LISEGQIVYHG 444
+ +G++ G
Sbjct: 970 AVKDGRMTPSG 980
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 1025 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1081
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1082 HQPSIDIFEAFDELLLM-----KRGGRVIYAG 1108
H ++D+ + D ++ + RGG+++ G
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 797 IGFSFLFNFLFIAALTYLNPIGDSNSTVVEEDGDKKRAS--------GNEVEGTQMTVRS 848
IG N IA L + +G++ VVE D D A+ G + G ++
Sbjct: 233 IGLHQRDNDRLIATLKSMRDLGNT-LIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAG 291
Query: 849 STEIVGEEENAPRRGMILPFRPLSLTFNQMNYYVDMPAEMKT------EGVGEDRLQLLH 902
+ E V + N+ L+ + ++ +PAE + E VG R L
Sbjct: 292 TPEEVMNDPNS-----------LTGQYLSGKKFIPIPAERRRPDGRWLEVVGA-REHNLK 339
Query: 903 SVSGAFRPGVLTALMGVSGAGKTTLMD 929
+VS G A+ GVSG+GK+TL++
Sbjct: 340 NVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E+++ +S D + I ++ E + +D +V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 216 VTSK--MEHLKKADKILILHEGSSYFYG 241
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222
+LKD++ ++ ++ + G GAGKT+L++ + G+L
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV---MELVELKPLRDAL 1016
S +C Q P T+ E+++ ++ D + K V ++ + + +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY-------DEYRYKSVVKACQLQQDITKFAEQDNTV 152
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 153 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 211
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ + ++ D++L++ +G Y
Sbjct: 212 RILVTSK--MEHLRKADKILILHQGSSYFYG 240
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++ + +S D + I ++ E + +D +V
Sbjct: 72 S-FCSQFSWIMPG-TIKENI-----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 185 VTSK--MEHLKKADKILILHEGSSYFYG 210
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222
+LKD++ ++ ++ + G GAGKT+L++ + G+L
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 887 EMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 946
E++ VG D+ +L ++ G + G +G GKTTL+ ++ ++G+I
Sbjct: 12 EIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIY 68
Query: 947 SGYPKKQETFARVSG--YCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVM 1004
+G P +V G + +I P E L + ++S K K + + +
Sbjct: 69 NGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKA----VASLYGVKVNKNEIMDAL 119
Query: 1005 ELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1064
E VE+ L+ L LS +R+ +A L+ N I +D+P +D + V+
Sbjct: 120 ESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1065 RTV 1067
+++
Sbjct: 174 KSI 176
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 999 FVDEVMELVELKPLRDA-----LVGLPGVNGLSTEQRKRLTIAVELVANP---SIIFMDE 1050
F DE L LR+ +G P LS + +R+ +A EL + ++ +DE
Sbjct: 701 FADESAIFRALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDE 759
Query: 1051 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVI 1105
PT+GL + R + VD G TV+ H+ + + A D +L + + GGR++
Sbjct: 760 PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLV 817
Query: 1106 YAG 1108
G
Sbjct: 818 AQG 820
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1025 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
LS + +RL +A +L +N + +DEP++GL ++ + N G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1083 QPSIDIFEAFDELLLM-----KRGGRVIYAGP 1109
+D+ D L+ + ++GG ++Y+GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV 227
+P LL GPPG GKTTL +A +L NLRV
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV---MELVELKPLRDAL 1016
S +C Q P T+ E+++ D + K V ++ + + +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIISGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV 227
+P LL GPPG GKTTL +A +L NLRV
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++++ +S D + I ++ E + +D +V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS Q+ ++++A + + + +D P LD + + + +T +
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 216 VTSK--MEHLKKADKILILHEGSSYFYG 241
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222
+LKD++ ++ ++ + G GAGKT+L++ + G+L
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHEN 224
+KP + LL GPPG GKT L A+A + N
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 185 QILKDVSGIVKPSRMTLLL--GPPGAGKTTLMLALAGKLH-ENLRVRF 229
I+K + VK M LL GPPG GKTT LALA +L EN R F
Sbjct: 32 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420
+SGG K+RV L+ VL++DE ++ LD T I + LK++ ++ +T+I
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFV--- 211
Query: 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLEF 452
T+D+ L + ++Y G N++E+
Sbjct: 212 ----THDIAVAAELADKVAVIYGG---NLVEY 236
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEV---MELVELKPLRDAL 1016
S +C Q P T+ E+++ D + K V ++ + + +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1077 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV 227
+P LL GPPG GKTTL +A +L NLRV
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 39/108 (36%)
Query: 194 VKPSRMTLLLGPPGAGKT--------------------TLMLALAGKLHENLRVRFQSNK 233
VKP R LL GPPG GKT +M LAG+ NLR F+
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE--- 291
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 281
+ E+ + I + EL+ P+R + HGE+ R
Sbjct: 292 -------EAEKNAPAIIFI-DELDAIAPKR--------EKTHGEVERR 323
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLHEN 224
PS+ L GPPG GKT L A+A + N
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQAN 538
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 39/108 (36%)
Query: 194 VKPSRMTLLLGPPGAGKT--------------------TLMLALAGKLHENLRVRFQSNK 233
VKP R LL GPPG GKT +M LAG+ NLR F+
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE--- 291
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 281
+ E+ + I + EL+ P+R + HGE+ R
Sbjct: 292 -------EAEKNAPAIIFI-DELDAIAPKR--------EKTHGEVERR 323
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLHEN 224
PS+ L GPPG GKT L A+A + N
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQAN 538
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKL 221
R LL GPPG GKT L LA+A +L
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQEL 101
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKL 221
R LL GPPG GKT L LA+A +L
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQEL 87
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGK 220
VKP R LL GPPG GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 33.9 bits (76), Expect = 0.69, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222
K + LL+GPPG GKT L A+AG+ H
Sbjct: 42 KIPKGVLLVGPPGTGKTLLAKAVAGEAH 69
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGK 220
VKP R LL GPPG GKT + A+A +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANE 261
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 39/108 (36%)
Query: 194 VKPSRMTLLLGPPGAGKT--------------------TLMLALAGKLHENLRVRFQSNK 233
VKP R LL GPPG GKT +M LAG+ NLR F+
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE--- 291
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 281
+ E+ + I + EL+ P+R + HGE+ R
Sbjct: 292 -------EAEKNAPAIIFI-DELDAIAPKR--------EKTHGEVERR 323
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 142 HLSVDGDVHVGSRALPTLLNVALNTIESALG---LLHLVPSKKRDVQILKDVS------- 191
+S D S+A+ T A++ IE A G ++ L K DVQ++ S
Sbjct: 11 EISAPTDAKERSKAIET----AMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLAL 66
Query: 192 --GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223
G + R+T + GP GKTTL LA+ + +
Sbjct: 67 GVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK 100
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 39/108 (36%)
Query: 194 VKPSRMTLLLGPPGAGKT--------------------TLMLALAGKLHENLRVRFQSNK 233
VKP R LL GPPG GKT +M LAG+ NLR F+
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE--- 291
Query: 234 FLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 281
+ E+ + I + EL+ P+R + HGE+ R
Sbjct: 292 -------EAEKNAPAIIFI-DELDAIAPKR--------EKTHGEVERR 323
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLHENL 225
PS+ L GPPG GKT L A+A + N
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANECQANF 77
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
+G+ P+R LL GPPG GKT L A+A +
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.96, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1048 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAG 219
+ P R LL GPPG GKT L+ A+A
Sbjct: 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRV 227
LL GPPG GKTTL +A +L N+ V
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHV 81
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRV 227
LL GPPG GKTTL +A +L N+ V
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHV 81
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRV 227
LL GPPG GKTTL +A +L N+ V
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHV 81
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRV 227
LL GPPG GKTTL +A +L N+ V
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHV 81
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1029 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 1017 VGLPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073
+G P LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1074 GRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYAG 1108
G TV+ H ++D+ + D ++ + K GG ++ G
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRV 227
LL GPPG GKTTL +A +L N+ V
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHV 81
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMD-----VLAGRKTG 937
R L + +F GVLT++ GVSG+GK+TL++ VLA R G
Sbjct: 654 REHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNG 699
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 1025 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1082
LS + +R+ +A ++ + + +DEP+ GL R ++ T+ D G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1083 QPSIDIFEAFDELLLM-----KRGGRVIYAGPLGRESHKLIEYFEAVPG----------V 1127
D E D ++ + + GGR++++GP +L+ +++ G +
Sbjct: 582 DE--DTIEHADWIVDIGPGAGEHGGRIVHSGPY----DELLRNKDSITGAYLSGRESIEI 635
Query: 1128 PKIKDAYNPATWMLEVSNISVENQLGVDFA 1157
P I+ + +P L V N G+D +
Sbjct: 636 PAIRRSVDP-RRQLTVVGAREHNLRGIDVS 664
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1025 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1081
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1082 HQPSIDIFEAFD 1093
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|2A45|I Chain I, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|L Chain L, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
Length = 45
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 442 YHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQE 480
Y RDN E+ G CP G+ADFL +K D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 201 LLLGPPGAGKTTLMLALAGK----LHEN---------LRVRFQSNKFLIIRIWKTEQ 244
+LLG PG GKT+L AGK LHE L V + +++ W+ E+
Sbjct: 8 VLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 915 ALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIKISGYPKKQETFARVSGYCEQT 966
A++G +GAGK+TL++VL G T G Y + +I+ KQ FA + + ++T
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDKT 750
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974
+ G +G GK+TL +A + + G+P ++E + Y E DI H
Sbjct: 459 GICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSD 504
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLT 1034
S+L S V TK+ D+++E D + P ++ LS + +L
Sbjct: 505 T--SVLD---FVFESGVGTKE--AIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLA 552
Query: 1035 IAVELVANPSIIFMDEPTSGLD 1056
+A ++ N I+ +DEPT+ LD
Sbjct: 553 LARAVLRNADILLLDEPTNHLD 574
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKL---------HENLRVRF 229
S ++GP GAGK+TL+ L G+L HEN R+ +
Sbjct: 693 SSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAY 734
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 996 RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
R + E+ E L +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 867 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 926
Query: 1056 D 1056
D
Sbjct: 927 D 927
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 915 ALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIKISGYPKKQETFARVSGYCEQT 966
A++G +GAGK+TL++VL G T G Y + +I+ KQ FA + + ++T
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDKT 756
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 915 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974
+ G +G GK+TL +A + + G+P ++E + Y E DI H
Sbjct: 465 GICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSD 510
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLT 1034
S+L S V TK+ D+++E D + P ++ LS + +L
Sbjct: 511 T--SVLD---FVFESGVGTKE--AIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLA 558
Query: 1035 IAVELVANPSIIFMDEPTSGLD 1056
+A ++ N I+ +DEPT+ LD
Sbjct: 559 LARAVLRNADILLLDEPTNHLD 580
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKL---------HENLRVRF 229
S ++GP GAGK+TL+ L G+L HEN R+ +
Sbjct: 699 SSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAY 740
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 996 RKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055
R + E+ E L +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 873 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 1056 D 1056
D
Sbjct: 933 D 933
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 937
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 181 KRDVQILKDVSGIVK-PSRM---TLLLGPPGAGKTTLMLALAGKLH 222
K V+ LKD S + +RM LL+GPPG GKT L A+AG+ +
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALA 218
+G+ P++ LL GPPG GKT L A+A
Sbjct: 48 TGLRAPAKGLLLFGPPGNGKTLLARAVA 75
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 442 YHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQE 480
Y RDN E+ G CP G+ADFL +K D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 201 LLLGPPGAGKTTLMLALAGKLHENLRV 227
LL GPPG G+TTL +A +L N+ V
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHV 81
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 201 LLLGPPGAGKTTLMLALAGKL 221
LLLGPPGAGK T + LA KL
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKL 44
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 201 LLLGPPGAGKTTLMLALAGKL 221
LLLGPPGAGK T + LA KL
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKL 24
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARV 959
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 960 SGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL 1019
S +C Q P T+ E++ + +S D + I ++ E + +D +V
Sbjct: 102 S-FCSQFSWIMPG-TIKENI-----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1020 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1079
G LS Q+ ++++A + + + +D P LD + + + +T +
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1080 TIHQPSIDIFEAFDELLLMKRGGRVIYA 1107
+ ++ + D++L++ G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222
+LKD++ ++ ++ + G GAGKT+L++ + G+L
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 937
+ L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALA 218
++P + LL GPPG GKT L A+A
Sbjct: 48 IEPPKGILLYGPPGTGKTLLAKAVA 72
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 26/182 (14%)
Query: 916 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVSGYCEQTDIHSPHVT 974
++G +G+GKTTL+ ++G G+I I+G +K + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL--KPLRDALVGLPGVNGLSTEQRKR 1032
+ ++Y L ++ R +F+ E+++ ++L + LR L L S Q
Sbjct: 90 V-NDIVY-----LYEELKGLDRDLFL-EMLKALKLGEEILRRKLYKL------SAGQSVL 136
Query: 1033 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1092
+ ++ L + P I+ +DEP +DA ++ R ++ + G+ + H+ +D+ +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNLY 191
Query: 1093 DE 1094
E
Sbjct: 192 KE 193
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 77 LLVGPPGVGKTHLARAVAGE 96
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 53 LLVGPPGVGKTHLARAVAGE 72
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 442 YHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQE 480
Y RDN E+ G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 163 ALNTIESALGLLHLVPSKKRD-VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
AL I L + L P + D + L G+V P+ + LL GPPG GKT L A+A +
Sbjct: 14 ALEDIREELTMAILAPVRNPDQFKAL----GLVTPAGV-LLAGPPGCGKTLLAKAVANES 68
Query: 222 HENLRVRFQSNKFLIIRIWKTEQA 245
N + + + L + + ++E+A
Sbjct: 69 GLNF-ISVKGPELLNMYVGESERA 91
>pdb|1JY2|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY2|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
Length = 48
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 442 YHGPRDNVLEFFEQMGFKCPERKGVADFLQEVTSKKDQE 480
Y RDN E+ G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 68 LLVGPPGVGKTHLARAVAGE 87
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGK 220
K + L++GPPG GKT L A+AG+
Sbjct: 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 77 LLVGPPGVGKTHLARAVAGE 96
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 185 QILKDVSGIVKPSRMTLLL--GPPGAGKTTLMLALAGKLH-ENLRVRF 229
++++ + G V+ + LL GPPG GKT +ALA L EN R F
Sbjct: 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 904 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 935
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 185 QILKDVSGIVKPSRMTLLL--GPPGAGKTTLMLALAGKLH-ENLRVRF 229
++++ + G V+ + LL GPPG GKT +ALA L EN R F
Sbjct: 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,001,143
Number of Sequences: 62578
Number of extensions: 1665932
Number of successful extensions: 4418
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3944
Number of HSP's gapped (non-prelim): 443
length of query: 1403
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1292
effective length of database: 8,027,179
effective search space: 10371115268
effective search space used: 10371115268
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)