Query 037155
Match_columns 1403
No_of_seqs 891 out of 5894
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.4E-73 4.6E-78 776.8 59.5 214 872-1110 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 4.1E-66 1.4E-70 701.8 68.0 214 872-1110 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 5.3E-56 1.8E-60 557.4 34.4 188 900-1112 371-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-55 7E-60 547.2 33.4 188 900-1112 301-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-54 7.7E-59 536.1 32.2 203 899-1124 282-486 (538)
6 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-53 4E-58 548.3 38.7 218 183-449 30-296 (670)
7 2iw3_A Elongation factor 3A; a 100.0 1.2E-53 4.1E-58 550.6 37.6 184 184-450 448-634 (986)
8 3j16_B RLI1P; ribosome recycli 100.0 2E-52 6.9E-57 523.8 31.3 189 899-1112 361-556 (608)
9 3tui_C Methionine import ATP-b 100.0 9.3E-41 3.2E-45 391.0 28.2 219 872-1111 24-249 (366)
10 3tif_A Uncharacterized ABC tra 100.0 2.5E-40 8.6E-45 369.8 28.1 204 898-1111 18-230 (235)
11 3pih_A Uvrabc system protein A 100.0 9.1E-40 3.1E-44 422.2 35.6 197 899-1110 598-897 (916)
12 3rlf_A Maltose/maltodextrin im 100.0 2.7E-40 9.2E-45 389.6 26.4 204 896-1111 14-219 (381)
13 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-40 1.3E-44 375.3 26.8 216 872-1111 7-229 (275)
14 2r6f_A Excinuclease ABC subuni 100.0 1.7E-39 5.8E-44 415.3 35.5 195 900-1110 639-937 (972)
15 2pcj_A ABC transporter, lipopr 100.0 3.9E-40 1.3E-44 365.7 25.4 200 897-1109 16-222 (224)
16 2olj_A Amino acid ABC transpor 100.0 5.2E-40 1.8E-44 372.2 26.8 213 873-1110 25-243 (263)
17 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-40 6.7E-45 388.4 23.8 204 896-1111 15-224 (359)
18 1b0u_A Histidine permease; ABC 100.0 5.5E-40 1.9E-44 372.8 25.7 213 873-1110 7-237 (262)
19 3tui_C Methionine import ATP-b 100.0 6.4E-40 2.2E-44 383.9 26.8 207 183-450 40-252 (366)
20 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-39 3.8E-44 368.3 25.8 213 873-1110 16-230 (256)
21 1z47_A CYSA, putative ABC-tran 100.0 1.5E-39 5E-44 381.4 26.3 215 872-1110 14-230 (355)
22 1g6h_A High-affinity branched- 100.0 7.3E-40 2.5E-44 371.1 22.4 216 873-1110 8-237 (257)
23 2vf7_A UVRA2, excinuclease ABC 100.0 3.3E-39 1.1E-43 413.8 30.4 106 998-1110 708-822 (842)
24 2it1_A 362AA long hypothetical 100.0 2.4E-39 8.3E-44 380.9 26.1 203 896-1110 14-218 (362)
25 3fvq_A Fe(3+) IONS import ATP- 100.0 1.8E-39 6.1E-44 380.2 24.6 206 184-450 17-227 (359)
26 2yyz_A Sugar ABC transporter, 100.0 2E-39 6.8E-44 381.2 24.7 203 896-1110 14-218 (359)
27 4g1u_C Hemin import ATP-bindin 100.0 1.8E-39 6.3E-44 368.8 22.9 213 872-1111 11-233 (266)
28 3rlf_A Maltose/maltodextrin im 100.0 2.6E-39 8.8E-44 381.3 24.7 206 184-450 16-222 (381)
29 1g29_1 MALK, maltose transport 100.0 3.8E-39 1.3E-43 381.5 26.2 203 896-1110 14-224 (372)
30 1ji0_A ABC transporter; ATP bi 100.0 2.4E-39 8.1E-44 363.2 23.1 212 873-1110 7-223 (240)
31 3gfo_A Cobalt import ATP-bindi 100.0 6.4E-39 2.2E-43 365.3 25.5 207 184-451 21-233 (275)
32 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-39 7.9E-44 381.1 22.3 200 900-1111 20-226 (353)
33 3tif_A Uncharacterized ABC tra 100.0 6.5E-39 2.2E-43 358.3 24.1 207 184-449 18-232 (235)
34 1v43_A Sugar-binding transport 100.0 3.8E-39 1.3E-43 380.5 22.9 213 873-1110 12-226 (372)
35 1z47_A CYSA, putative ABC-tran 100.0 9.5E-39 3.2E-43 374.5 26.0 206 184-450 28-234 (355)
36 2ygr_A Uvrabc system protein A 100.0 7.5E-38 2.6E-42 401.7 35.8 195 900-1110 657-955 (993)
37 4g1u_C Hemin import ATP-bindin 100.0 1.7E-38 6E-43 360.8 26.1 204 184-450 24-236 (266)
38 3d31_A Sulfate/molybdate ABC t 100.0 7.2E-39 2.5E-43 375.4 23.1 199 896-1110 12-212 (348)
39 2yyz_A Sugar ABC transporter, 100.0 1.4E-38 4.9E-43 373.9 25.7 206 184-450 16-222 (359)
40 3nh6_A ATP-binding cassette SU 100.0 1.1E-38 3.6E-43 367.9 24.0 208 184-451 67-277 (306)
41 2d2e_A SUFC protein; ABC-ATPas 100.0 1.4E-38 4.7E-43 359.2 22.8 218 873-1110 4-228 (250)
42 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-38 3.6E-43 364.8 22.0 220 870-1111 19-248 (279)
43 2it1_A 362AA long hypothetical 100.0 1.6E-38 5.5E-43 373.9 24.1 206 184-450 16-222 (362)
44 2olj_A Amino acid ABC transpor 100.0 3.3E-38 1.1E-42 357.4 24.6 205 184-450 37-247 (263)
45 2pcj_A ABC transporter, lipopr 100.0 2.5E-38 8.5E-43 351.2 22.8 200 184-446 17-223 (224)
46 2onk_A Molybdate/tungstate ABC 100.0 1.9E-38 6.6E-43 355.0 22.1 196 900-1110 14-211 (240)
47 2yz2_A Putative ABC transporte 100.0 3.2E-38 1.1E-42 359.3 23.9 200 898-1110 20-222 (266)
48 1v43_A Sugar-binding transport 100.0 2.6E-38 8.9E-43 373.4 23.9 206 184-450 24-230 (372)
49 3d31_A Sulfate/molybdate ABC t 100.0 2E-38 6.7E-43 371.7 22.6 201 186-450 15-216 (348)
50 1g29_1 MALK, maltose transport 100.0 3.3E-38 1.1E-42 373.5 24.1 206 184-450 16-228 (372)
51 1b0u_A Histidine permease; ABC 100.0 2.4E-38 8.2E-43 359.3 21.9 205 184-450 19-241 (262)
52 1oxx_K GLCV, glucose, ABC tran 100.0 2.5E-38 8.5E-43 372.3 22.0 204 186-450 20-229 (353)
53 2zu0_C Probable ATP-dependent 100.0 1.1E-37 3.9E-42 354.8 26.7 220 872-1110 20-249 (267)
54 1g6h_A High-affinity branched- 100.0 4.4E-38 1.5E-42 356.5 22.6 213 184-448 20-239 (257)
55 1vpl_A ABC transporter, ATP-bi 100.0 7.4E-38 2.5E-42 353.4 23.2 206 184-451 28-235 (256)
56 1ji0_A ABC transporter; ATP bi 100.0 9.8E-38 3.4E-42 350.1 23.1 204 184-450 19-227 (240)
57 2nq2_C Hypothetical ABC transp 100.0 2.3E-37 7.7E-42 349.3 25.4 194 897-1110 17-212 (253)
58 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-37 4.6E-42 349.9 23.3 194 899-1110 14-217 (249)
59 2onk_A Molybdate/tungstate ABC 100.0 8.4E-38 2.9E-42 349.8 21.5 201 186-450 14-215 (240)
60 3nh6_A ATP-binding cassette SU 100.0 1.4E-37 4.8E-42 358.6 22.5 211 871-1110 52-272 (306)
61 2ff7_A Alpha-hemolysin translo 100.0 2.8E-37 9.6E-42 347.5 22.6 211 872-1110 7-227 (247)
62 2ixe_A Antigen peptide transpo 100.0 1.3E-37 4.4E-42 354.8 19.6 215 873-1110 17-240 (271)
63 1sgw_A Putative ABC transporte 100.0 6.3E-38 2.1E-42 344.3 16.2 197 872-1098 10-206 (214)
64 2yz2_A Putative ABC transporte 100.0 5.9E-37 2E-41 348.9 22.6 205 184-451 20-227 (266)
65 2ff7_A Alpha-hemolysin translo 100.0 2.8E-36 9.7E-41 339.3 25.9 200 184-450 22-231 (247)
66 2ixe_A Antigen peptide transpo 100.0 1.7E-36 5.7E-41 345.7 22.7 209 184-451 32-245 (271)
67 1mv5_A LMRA, multidrug resista 100.0 5.5E-37 1.9E-41 344.8 16.7 198 897-1110 14-221 (243)
68 2ihy_A ABC transporter, ATP-bi 100.0 1.5E-36 5.1E-41 347.1 20.4 208 184-449 34-250 (279)
69 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-36 7.3E-41 340.1 21.1 197 185-449 14-220 (249)
70 4a82_A Cystic fibrosis transme 100.0 3.5E-36 1.2E-40 379.4 24.0 208 184-451 354-564 (578)
71 1mv5_A LMRA, multidrug resista 100.0 4.2E-36 1.4E-40 337.6 21.0 202 184-451 15-226 (243)
72 2nq2_C Hypothetical ABC transp 100.0 1.3E-35 4.5E-40 334.9 24.4 197 184-449 18-215 (253)
73 2pjz_A Hypothetical protein ST 100.0 3.3E-36 1.1E-40 341.0 19.6 190 898-1110 18-210 (263)
74 3qf4_A ABC transporter, ATP-bi 100.0 5.8E-36 2E-40 377.5 23.8 209 183-451 355-566 (587)
75 2d2e_A SUFC protein; ABC-ATPas 100.0 6.1E-36 2.1E-40 337.6 21.1 206 184-448 16-230 (250)
76 2ghi_A Transport protein; mult 100.0 7.5E-36 2.6E-40 338.5 21.3 210 873-1110 18-237 (260)
77 2ghi_A Transport protein; mult 100.0 1.8E-35 6.1E-40 335.3 24.3 206 184-451 33-242 (260)
78 2zu0_C Probable ATP-dependent 100.0 2E-35 6.8E-40 336.3 24.1 222 184-458 33-260 (267)
79 4f4c_A Multidrug resistance pr 100.0 3.8E-36 1.3E-40 409.5 21.4 213 181-451 1089-1304(1321)
80 3qf4_B Uncharacterized ABC tra 100.0 8.9E-36 3E-40 376.9 20.9 208 184-451 368-578 (598)
81 3b60_A Lipid A export ATP-bind 100.0 6.2E-35 2.1E-39 368.5 27.2 209 184-451 356-567 (582)
82 3gd7_A Fusion complex of cysti 100.0 1.8E-35 6E-40 351.4 20.5 200 184-451 34-242 (390)
83 3b5x_A Lipid A export ATP-bind 100.0 6.9E-35 2.4E-39 368.1 26.1 209 184-451 356-567 (582)
84 2pjz_A Hypothetical protein ST 100.0 4.3E-35 1.5E-39 331.9 20.9 194 184-450 18-214 (263)
85 1sgw_A Putative ABC transporte 100.0 2.8E-35 9.5E-40 323.3 17.7 188 185-440 23-210 (214)
86 3gd7_A Fusion complex of cysti 100.0 9.9E-36 3.4E-40 353.6 15.2 210 872-1110 19-237 (390)
87 2yl4_A ATP-binding cassette SU 100.0 1.1E-34 3.6E-39 367.4 25.3 210 184-450 357-569 (595)
88 2pze_A Cystic fibrosis transme 100.0 7.8E-35 2.7E-39 324.2 20.6 199 873-1110 7-213 (229)
89 2cbz_A Multidrug resistance-as 100.0 6.1E-35 2.1E-39 326.6 19.7 199 873-1110 4-212 (237)
90 3b5x_A Lipid A export ATP-bind 100.0 9.4E-33 3.2E-37 348.7 41.7 212 872-1110 341-562 (582)
91 2pze_A Cystic fibrosis transme 100.0 2.4E-34 8.3E-39 320.2 23.3 196 184-450 21-217 (229)
92 2cbz_A Multidrug resistance-as 100.0 2.7E-34 9.4E-39 321.3 22.2 196 184-451 18-217 (237)
93 2yl4_A ATP-binding cassette SU 100.0 4.6E-34 1.6E-38 361.5 26.6 215 873-1111 342-566 (595)
94 4a82_A Cystic fibrosis transme 100.0 2.2E-34 7.5E-39 363.0 22.6 212 871-1110 338-559 (578)
95 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-34 4.7E-39 365.0 19.7 212 871-1110 340-561 (587)
96 3b60_A Lipid A export ATP-bind 100.0 6.6E-34 2.3E-38 359.2 24.5 212 872-1110 341-562 (582)
97 3qf4_B Uncharacterized ABC tra 100.0 7.8E-34 2.7E-38 359.1 19.0 211 871-1110 353-573 (598)
98 2bbs_A Cystic fibrosis transme 100.0 7.1E-33 2.4E-37 317.9 19.4 184 898-1110 51-242 (290)
99 2bbs_A Cystic fibrosis transme 100.0 1.6E-32 5.4E-37 315.0 18.4 195 184-450 51-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 3.7E-32 1.3E-36 369.4 22.9 211 183-451 1045-1258(1284)
101 3bk7_A ABC transporter ATP-bin 100.0 2.4E-29 8.3E-34 315.9 18.8 191 186-451 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-29 1.2E-33 311.4 17.4 191 186-451 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-28 3.7E-33 306.1 19.8 192 186-450 283-476 (538)
104 2iw3_A Elongation factor 3A; a 100.0 1.9E-28 6.6E-33 316.6 20.0 182 896-1110 446-630 (986)
105 3ux8_A Excinuclease ABC, A sub 100.0 8.2E-29 2.8E-33 317.9 15.4 205 898-1111 31-294 (670)
106 3j16_B RLI1P; ribosome recycli 100.0 2.5E-28 8.6E-33 306.0 19.0 193 184-451 360-559 (608)
107 1tf7_A KAIC; homohexamer, hexa 100.0 7.2E-30 2.5E-34 318.6 4.2 153 906-1100 276-442 (525)
108 3pih_A Uvrabc system protein A 99.9 7.6E-24 2.6E-28 274.0 21.6 108 335-450 784-901 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 5.9E-24 2E-28 272.4 19.1 106 337-450 826-941 (972)
110 4aby_A DNA repair protein RECN 99.9 3.5E-24 1.2E-28 260.1 14.5 203 899-1107 49-380 (415)
111 2vf7_A UVRA2, excinuclease ABC 99.9 1.3E-23 4.5E-28 269.7 18.0 108 335-450 709-826 (842)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 7.5E-26 2.6E-30 275.3 -2.7 185 188-450 129-337 (460)
113 2ygr_A Uvrabc system protein A 99.9 1.4E-23 4.8E-28 270.0 18.0 107 337-451 844-960 (993)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.7E-26 1.3E-30 278.0 -7.8 196 902-1123 129-350 (460)
115 4aby_A DNA repair protein RECN 99.9 2.6E-22 9E-27 243.6 15.8 253 184-444 48-381 (415)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 9.1E-22 3.1E-26 233.9 16.4 82 1022-1106 277-364 (365)
117 3b85_A Phosphate starvation-in 99.8 3.4E-24 1.2E-28 234.4 -9.0 145 895-1085 10-159 (208)
118 1e69_A Chromosome segregation 99.8 3.2E-21 1.1E-25 225.9 14.2 86 1022-1110 217-308 (322)
119 4gp7_A Metallophosphoesterase; 99.8 2.4E-22 8.2E-27 213.5 3.7 143 903-1085 1-160 (171)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.7E-20 9.3E-25 221.3 13.5 82 358-442 277-364 (365)
121 3b85_A Phosphate starvation-in 99.8 5E-22 1.7E-26 217.2 -2.1 147 182-421 11-158 (208)
122 2v9p_A Replication protein E1; 99.8 1E-22 3.4E-27 234.0 -9.0 158 184-456 113-271 (305)
123 1tq4_A IIGP1, interferon-induc 99.8 9.8E-23 3.4E-27 243.5 -12.0 171 898-1096 36-248 (413)
124 1znw_A Guanylate kinase, GMP k 99.8 2.5E-23 8.5E-28 228.1 -16.7 184 897-1102 8-205 (207)
125 1e69_A Chromosome segregation 99.8 9.6E-20 3.3E-24 213.3 11.9 87 359-449 218-311 (322)
126 1ye8_A Protein THEP1, hypothet 99.8 2E-20 6.7E-25 199.8 4.1 151 913-1109 2-162 (178)
127 1tq4_A IIGP1, interferon-induc 99.8 1.3E-21 4.3E-26 234.0 -7.1 173 183-433 35-248 (413)
128 4gp7_A Metallophosphoesterase; 99.8 6.2E-20 2.1E-24 194.9 5.3 60 361-421 84-159 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 3E-20 1E-24 198.4 2.2 76 359-442 75-159 (178)
130 3b9q_A Chloroplast SRP recepto 99.7 1.9E-19 6.4E-24 208.0 0.7 175 187-440 90-284 (302)
131 3sop_A Neuronal-specific septi 99.7 5.9E-20 2E-24 209.1 -5.1 148 913-1085 4-151 (270)
132 3qkt_A DNA double-strand break 99.7 5.8E-17 2E-21 191.1 19.5 76 1022-1099 246-327 (339)
133 3sop_A Neuronal-specific septi 99.7 1.3E-19 4.3E-24 206.4 -3.3 146 199-420 4-149 (270)
134 3b9q_A Chloroplast SRP recepto 99.7 1.6E-19 5.6E-24 208.5 -2.6 154 901-1083 90-256 (302)
135 2v9p_A Replication protein E1; 99.7 1.2E-21 3.9E-26 225.2 -20.6 158 898-1124 113-271 (305)
136 1z6g_A Guanylate kinase; struc 99.7 1.5E-21 5.2E-26 215.6 -19.7 154 899-1072 11-175 (218)
137 2pt7_A CAG-ALFA; ATPase, prote 99.7 8.4E-19 2.9E-23 205.3 -0.7 130 900-1101 160-290 (330)
138 2og2_A Putative signal recogni 99.7 2.1E-18 7.2E-23 202.8 1.9 173 188-439 148-340 (359)
139 2o5v_A DNA replication and rep 99.7 3.4E-17 1.2E-21 192.8 11.7 79 1024-1111 265-352 (359)
140 2og2_A Putative signal recogni 99.7 1.1E-18 3.9E-23 205.0 -1.3 153 902-1083 148-313 (359)
141 2o5v_A DNA replication and rep 99.7 9.5E-17 3.3E-21 189.1 14.2 81 360-449 265-354 (359)
142 2dpy_A FLII, flagellum-specifi 99.7 8.2E-19 2.8E-23 212.4 -3.5 183 889-1110 135-339 (438)
143 1z6g_A Guanylate kinase; struc 99.7 2.4E-20 8.2E-25 206.1 -15.8 170 185-437 11-193 (218)
144 4ad8_A DNA repair protein RECN 99.7 3.5E-17 1.2E-21 203.8 10.6 77 1022-1101 394-473 (517)
145 1znw_A Guanylate kinase, GMP k 99.7 6.7E-20 2.3E-24 200.8 -13.9 184 184-436 9-202 (207)
146 1cr0_A DNA primase/helicase; R 99.7 1.3E-17 4.5E-22 192.9 4.0 183 898-1101 22-235 (296)
147 3aez_A Pantothenate kinase; tr 99.7 2.6E-18 9E-23 199.3 -2.0 128 189-393 81-209 (312)
148 2dpy_A FLII, flagellum-specifi 99.7 1.2E-18 4E-23 211.0 -5.2 179 183-449 144-342 (438)
149 2pt7_A CAG-ALFA; ATPase, prote 99.6 3.5E-17 1.2E-21 191.6 3.0 133 186-440 160-292 (330)
150 1cr0_A DNA primase/helicase; R 99.6 8.7E-17 3E-21 185.9 5.3 187 183-440 21-237 (296)
151 3qkt_A DNA double-strand break 99.6 2.8E-15 9.5E-20 176.7 17.0 75 359-436 247-327 (339)
152 2jeo_A Uridine-cytidine kinase 99.6 4.8E-17 1.6E-21 182.9 1.8 177 182-452 10-188 (245)
153 2ehv_A Hypothetical protein PH 99.6 6.3E-17 2.2E-21 181.7 2.4 161 907-1099 26-206 (251)
154 3thx_A DNA mismatch repair pro 99.6 1.3E-16 4.3E-21 207.9 4.7 157 897-1110 648-808 (934)
155 2jeo_A Uridine-cytidine kinase 99.6 1.6E-17 5.4E-22 186.8 -3.5 155 896-1083 10-164 (245)
156 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.3E-15 4.5E-20 156.9 11.1 76 1022-1099 55-136 (148)
157 4ad8_A DNA repair protein RECN 99.6 1.3E-15 4.5E-20 189.6 11.3 76 359-438 395-473 (517)
158 2o8b_B DNA mismatch repair pro 99.6 1.5E-16 5E-21 210.0 2.8 153 897-1105 768-930 (1022)
159 3aez_A Pantothenate kinase; tr 99.6 1.7E-17 5.7E-22 192.6 -6.5 123 908-1057 87-209 (312)
160 2obl_A ESCN; ATPase, hydrolase 99.6 1.3E-16 4.5E-21 187.5 -0.0 176 897-1110 58-250 (347)
161 2eyu_A Twitching motility prot 99.6 3.4E-16 1.2E-20 177.1 3.2 133 899-1100 15-147 (261)
162 3thx_B DNA mismatch repair pro 99.6 2.1E-16 7.2E-21 205.2 -0.1 144 897-1094 659-804 (918)
163 4a74_A DNA repair and recombin 99.6 5.4E-16 1.9E-20 171.8 2.1 152 906-1101 20-200 (231)
164 1tf7_A KAIC; homohexamer, hexa 99.5 8.8E-15 3E-19 182.5 12.3 156 191-439 275-444 (525)
165 3thx_A DNA mismatch repair pro 99.5 5.8E-15 2E-19 192.3 10.6 89 359-449 720-811 (934)
166 2obl_A ESCN; ATPase, hydrolase 99.5 7.4E-16 2.5E-20 181.1 -1.0 180 183-449 58-253 (347)
167 1ewq_A DNA mismatch repair pro 99.5 2.2E-15 7.5E-20 193.2 3.0 129 897-1085 565-699 (765)
168 2qnr_A Septin-2, protein NEDD5 99.5 1.5E-16 5.1E-21 184.2 -8.4 158 895-1085 8-168 (301)
169 2o8b_B DNA mismatch repair pro 99.5 2E-15 6.8E-20 199.2 1.2 160 184-448 769-939 (1022)
170 3asz_A Uridine kinase; cytidin 99.5 5.1E-17 1.7E-21 178.1 -11.8 145 908-1084 3-161 (211)
171 4a74_A DNA repair and recombin 99.5 5.9E-15 2E-19 163.4 4.7 158 192-438 20-200 (231)
172 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 6.1E-14 2.1E-18 144.5 10.7 80 358-440 55-142 (148)
173 2eyu_A Twitching motility prot 99.5 1E-14 3.5E-19 165.0 4.3 133 185-437 15-147 (261)
174 1wb9_A DNA mismatch repair pro 99.5 1.2E-14 3.9E-19 187.6 4.5 155 897-1107 594-750 (800)
175 3asz_A Uridine kinase; cytidin 99.5 1E-15 3.6E-20 167.6 -4.9 145 194-420 3-160 (211)
176 1rj9_A FTSY, signal recognitio 99.5 3.1E-15 1.1E-19 172.7 -1.1 148 910-1084 101-258 (304)
177 1pzn_A RAD51, DNA repair and r 99.5 9.4E-15 3.2E-19 172.4 2.3 170 185-446 118-310 (349)
178 1rj9_A FTSY, signal recognitio 99.4 5.9E-15 2E-19 170.5 -0.7 149 196-421 101-258 (304)
179 2ehv_A Hypothetical protein PH 99.4 1.5E-14 5.1E-19 162.3 2.4 72 363-436 120-206 (251)
180 1nlf_A Regulatory protein REPA 99.4 1.3E-13 4.5E-18 157.9 9.8 151 907-1085 26-182 (279)
181 1w1w_A Structural maintenance 99.4 2.7E-13 9.1E-18 165.0 12.8 74 360-436 333-410 (430)
182 2i3b_A HCR-ntpase, human cance 99.4 1.4E-15 4.7E-20 163.7 -6.8 158 197-444 1-169 (189)
183 1pzn_A RAD51, DNA repair and r 99.4 8.9E-15 3.1E-19 172.6 -0.6 164 901-1109 120-309 (349)
184 3thx_B DNA mismatch repair pro 99.4 1.1E-13 3.7E-18 179.9 9.3 71 359-432 734-805 (918)
185 2w0m_A SSO2452; RECA, SSPF, un 99.4 3.3E-14 1.1E-18 157.4 3.6 166 899-1100 10-191 (235)
186 1ewq_A DNA mismatch repair pro 99.4 4.8E-14 1.7E-18 180.7 5.4 127 184-421 566-698 (765)
187 2i3b_A HCR-ntpase, human cance 99.4 9.8E-16 3.4E-20 164.8 -10.0 160 911-1110 1-171 (189)
188 2qnr_A Septin-2, protein NEDD5 99.4 4.7E-15 1.6E-19 171.6 -5.4 152 183-417 10-163 (301)
189 1nlf_A Regulatory protein REPA 99.4 7.6E-13 2.6E-17 151.5 13.0 151 193-421 26-181 (279)
190 2w0m_A SSO2452; RECA, SSPF, un 99.4 7.3E-13 2.5E-17 146.6 12.5 78 361-438 104-192 (235)
191 3jvv_A Twitching mobility prot 99.4 1E-13 3.5E-18 163.3 4.4 132 900-1100 114-245 (356)
192 1wb9_A DNA mismatch repair pro 99.4 1.6E-13 5.5E-18 176.9 5.9 156 184-444 595-751 (800)
193 3szr_A Interferon-induced GTP- 99.4 1.8E-14 6.2E-19 182.0 -4.2 166 200-451 48-237 (608)
194 3szr_A Interferon-induced GTP- 99.3 1.2E-13 4.1E-18 174.5 1.8 136 914-1085 48-197 (608)
195 2qag_C Septin-7; cell cycle, c 99.3 4.8E-14 1.6E-18 169.2 -1.9 154 895-1085 21-178 (418)
196 3kta_B Chromosome segregation 99.3 1.9E-12 6.5E-17 136.8 10.5 75 1022-1099 62-140 (173)
197 1pui_A ENGB, probable GTP-bind 99.3 5.5E-14 1.9E-18 153.3 -3.9 165 900-1076 17-202 (210)
198 2qag_B Septin-6, protein NEDD5 99.3 1.2E-13 4.1E-18 164.8 -2.4 178 895-1083 25-218 (427)
199 1s96_A Guanylate kinase, GMP k 99.3 1.1E-13 3.9E-18 152.3 -3.0 126 907-1085 12-141 (219)
200 2cvh_A DNA repair and recombin 99.3 2.5E-11 8.6E-16 133.1 15.2 153 900-1101 8-185 (220)
201 3kta_B Chromosome segregation 99.3 3.2E-11 1.1E-15 127.4 13.6 89 359-451 63-158 (173)
202 1lw7_A Transcriptional regulat 99.2 1.4E-14 4.9E-19 172.4 -13.8 73 361-435 259-341 (365)
203 2cvh_A DNA repair and recombin 99.2 1.1E-11 3.7E-16 136.1 9.8 78 361-438 85-185 (220)
204 3jvv_A Twitching mobility prot 99.2 2.3E-12 7.8E-17 151.9 3.7 59 370-438 188-246 (356)
205 1zp6_A Hypothetical protein AT 99.2 6.8E-14 2.3E-18 150.4 -8.8 142 908-1071 6-148 (191)
206 2bdt_A BH3686; alpha-beta prot 99.2 1.2E-14 4.1E-19 156.3 -14.8 170 911-1111 2-180 (189)
207 2ewv_A Twitching motility prot 99.2 1.5E-12 5.1E-17 154.9 0.9 131 900-1099 127-257 (372)
208 1zp6_A Hypothetical protein AT 99.2 2.2E-13 7.6E-18 146.4 -6.1 139 193-405 5-146 (191)
209 1s96_A Guanylate kinase, GMP k 99.2 1.2E-12 4.2E-17 144.0 -0.5 69 192-280 11-79 (219)
210 2qag_C Septin-7; cell cycle, c 99.2 2.9E-12 1E-16 153.8 2.3 150 183-420 23-176 (418)
211 2f1r_A Molybdopterin-guanine d 99.2 2.8E-13 9.6E-18 143.1 -6.2 138 198-408 3-161 (171)
212 1nij_A Hypothetical protein YJ 99.2 1.4E-14 4.7E-19 169.1 -18.3 156 912-1085 5-190 (318)
213 2bdt_A BH3686; alpha-beta prot 99.2 5.7E-14 2E-18 151.0 -12.6 170 197-449 2-182 (189)
214 3auy_A DNA double-strand break 99.2 6.1E-11 2.1E-15 141.3 12.2 78 1022-1102 278-362 (371)
215 2gza_A Type IV secretion syste 99.2 3E-12 1E-16 151.8 0.5 137 900-1101 164-302 (361)
216 1htw_A HI0065; nucleotide-bind 99.2 1.6E-12 5.4E-17 135.6 -2.6 78 184-286 20-97 (158)
217 1n0w_A DNA repair protein RAD5 99.1 2.7E-11 9.3E-16 135.0 7.2 147 906-1101 19-209 (243)
218 1pui_A ENGB, probable GTP-bind 99.1 1.3E-12 4.6E-17 142.3 -3.8 65 339-408 132-198 (210)
219 2bbw_A Adenylate kinase 4, AK4 99.1 9E-14 3.1E-18 156.2 -13.5 148 910-1074 26-200 (246)
220 2gza_A Type IV secretion syste 99.1 1.5E-11 5.2E-16 145.8 4.5 136 186-439 164-303 (361)
221 2qag_B Septin-6, protein NEDD5 99.1 8.5E-12 2.9E-16 149.0 2.1 171 184-414 28-212 (427)
222 1lw7_A Transcriptional regulat 99.1 1.7E-13 5.8E-18 163.1 -12.9 161 901-1098 158-341 (365)
223 2ewv_A Twitching motility prot 99.1 1.6E-11 5.5E-16 146.0 3.6 131 186-436 127-257 (372)
224 2rcn_A Probable GTPase ENGC; Y 99.1 1.1E-11 3.8E-16 145.1 1.8 114 909-1039 213-328 (358)
225 2bbw_A Adenylate kinase 4, AK4 99.1 1.2E-12 4.1E-17 147.0 -6.3 159 196-408 26-198 (246)
226 1odf_A YGR205W, hypothetical 3 99.1 1.5E-11 5E-16 141.2 1.6 133 195-395 29-169 (290)
227 1udx_A The GTP-binding protein 99.1 6.3E-12 2.1E-16 150.8 -3.0 170 901-1095 147-319 (416)
228 2yhs_A FTSY, cell division pro 99.1 3.8E-11 1.3E-15 144.9 3.4 80 187-287 283-371 (503)
229 1htw_A HI0065; nucleotide-bind 99.1 2.4E-12 8.3E-17 134.2 -6.4 80 896-981 18-97 (158)
230 1w1w_A Structural maintenance 99.1 2.1E-10 7.3E-15 139.4 9.7 76 1023-1100 332-411 (430)
231 2yhs_A FTSY, cell division pro 99.0 1.3E-11 4.5E-16 148.9 -1.8 152 902-1082 284-447 (503)
232 2kjq_A DNAA-related protein; s 99.0 1E-10 3.6E-15 120.8 4.9 45 1040-1085 81-126 (149)
233 2f1r_A Molybdopterin-guanine d 99.0 2.1E-12 7.2E-17 136.4 -8.1 139 912-1075 3-164 (171)
234 1n0w_A DNA repair protein RAD5 99.0 2.1E-10 7.1E-15 127.8 7.6 62 377-438 118-209 (243)
235 2rcn_A Probable GTPase ENGC; Y 99.0 3E-11 1E-15 141.5 0.5 121 187-375 206-328 (358)
236 2qm8_A GTPase/ATPase; G protei 99.0 5.3E-13 1.8E-17 156.7 -14.5 166 897-1072 41-260 (337)
237 3e70_C DPA, signal recognition 99.0 1.5E-11 5E-16 143.4 -2.2 73 194-287 126-207 (328)
238 2qm8_A GTPase/ATPase; G protei 99.0 8.2E-12 2.8E-16 146.6 -5.1 182 184-407 42-259 (337)
239 1nij_A Hypothetical protein YJ 99.0 9.5E-13 3.2E-17 153.6 -13.5 165 198-422 5-190 (318)
240 3e70_C DPA, signal recognition 99.0 3.3E-11 1.1E-15 140.5 -1.7 142 909-1083 127-278 (328)
241 1udx_A The GTP-binding protein 99.0 3.6E-11 1.2E-15 144.2 -1.6 67 360-431 252-318 (416)
242 1odf_A YGR205W, hypothetical 3 99.0 3.3E-11 1.1E-15 138.3 -2.3 128 909-1059 29-169 (290)
243 3ec2_A DNA replication protein 99.0 3.3E-10 1.1E-14 120.6 5.2 47 1039-1085 97-144 (180)
244 3auy_A DNA double-strand break 98.9 1.6E-09 5.5E-14 129.0 10.5 74 359-436 279-359 (371)
245 3lda_A DNA repair protein RAD5 98.9 1E-09 3.4E-14 131.1 7.6 148 906-1101 173-363 (400)
246 2oap_1 GSPE-2, type II secreti 98.9 5.8E-13 2E-17 164.1 -21.8 177 898-1092 247-457 (511)
247 1p9r_A General secretion pathw 98.9 3.5E-12 1.2E-16 153.3 -15.2 145 887-1048 145-315 (418)
248 1p9r_A General secretion pathw 98.9 4.9E-11 1.7E-15 143.2 -5.5 137 184-383 156-314 (418)
249 2yv5_A YJEQ protein; hydrolase 98.9 8.6E-11 2.9E-15 135.9 -3.7 121 909-1038 163-301 (302)
250 2yv5_A YJEQ protein; hydrolase 98.9 4.5E-10 1.5E-14 129.8 2.2 123 195-373 163-300 (302)
251 1sxj_E Activator 1 40 kDa subu 98.9 1.9E-09 6.5E-14 127.3 7.4 164 914-1123 39-204 (354)
252 2oap_1 GSPE-2, type II secreti 98.9 2.4E-11 8E-16 149.8 -9.5 85 184-289 247-331 (511)
253 3ec2_A DNA replication protein 98.8 2.1E-09 7.1E-14 114.4 5.8 48 376-424 98-146 (180)
254 2x8a_A Nuclear valosin-contain 98.8 9.1E-12 3.1E-16 142.1 -14.0 142 184-403 33-190 (274)
255 3c8u_A Fructokinase; YP_612366 98.8 1.3E-10 4.5E-15 126.9 -4.4 30 194-223 19-48 (208)
256 3lda_A DNA repair protein RAD5 98.8 4.1E-08 1.4E-12 117.2 14.8 63 377-439 272-364 (400)
257 1lvg_A Guanylate kinase, GMP k 98.8 1.2E-11 3.9E-16 134.3 -14.8 57 371-437 116-173 (198)
258 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.2E-11 4.1E-16 146.9 -16.5 171 907-1112 16-210 (392)
259 3c8u_A Fructokinase; YP_612366 98.7 4.7E-11 1.6E-15 130.5 -10.8 148 908-1094 19-168 (208)
260 2kjq_A DNAA-related protein; s 98.7 1.9E-08 6.7E-13 103.7 9.3 46 376-423 81-127 (149)
261 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 2.1E-11 7.3E-16 144.8 -16.8 180 193-448 16-210 (392)
262 1in4_A RUVB, holliday junction 98.7 1.8E-10 6.2E-15 135.3 -9.3 157 184-411 31-197 (334)
263 1sxj_E Activator 1 40 kDa subu 98.7 1.4E-08 4.9E-13 119.7 6.2 45 375-422 131-175 (354)
264 1u0l_A Probable GTPase ENGC; p 98.6 3.7E-09 1.3E-13 122.1 0.6 73 193-287 165-259 (301)
265 1sq5_A Pantothenate kinase; P- 98.6 7.3E-10 2.5E-14 128.6 -5.4 73 195-288 78-153 (308)
266 1lvg_A Guanylate kinase, GMP k 98.6 9E-12 3.1E-16 135.1 -21.4 56 1035-1099 116-172 (198)
267 2x8a_A Nuclear valosin-contain 98.6 2E-11 7E-16 139.2 -19.7 129 897-1053 32-164 (274)
268 1t9h_A YLOQ, probable GTPase E 98.6 3.4E-09 1.2E-13 121.9 -1.3 118 906-1031 168-302 (307)
269 2dr3_A UPF0273 protein PH0284; 98.6 4.4E-09 1.5E-13 117.2 -0.4 60 1041-1100 127-196 (247)
270 1t9h_A YLOQ, probable GTPase E 98.6 7.8E-09 2.7E-13 118.9 1.2 71 193-285 169-248 (307)
271 1in4_A RUVB, holliday junction 98.6 3E-10 1E-14 133.3 -11.2 152 896-1072 29-194 (334)
272 1sq5_A Pantothenate kinase; P- 98.6 6.6E-10 2.3E-14 128.9 -8.4 86 899-986 49-156 (308)
273 2r6a_A DNAB helicase, replicat 98.6 2.6E-08 8.9E-13 121.8 5.1 178 899-1101 191-399 (454)
274 1vma_A Cell division protein F 98.6 6.5E-08 2.2E-12 111.6 8.0 45 361-408 166-213 (306)
275 1u0l_A Probable GTPase ENGC; p 98.5 1.1E-08 3.7E-13 118.2 0.7 100 908-1016 166-288 (301)
276 2r6a_A DNAB helicase, replicat 98.5 3.2E-07 1.1E-11 112.1 13.0 79 360-440 295-401 (454)
277 2dr3_A UPF0273 protein PH0284; 98.5 5.6E-07 1.9E-11 100.1 13.6 61 377-437 127-196 (247)
278 2zr9_A Protein RECA, recombina 98.5 4E-07 1.4E-11 107.1 11.5 78 1031-1109 126-237 (349)
279 3k1j_A LON protease, ATP-depen 98.4 2.3E-08 7.7E-13 126.7 -0.3 159 184-405 47-227 (604)
280 1vma_A Cell division protein F 98.4 5.5E-08 1.9E-12 112.1 2.9 111 905-1070 98-211 (306)
281 1ls1_A Signal recognition part 98.4 3.1E-07 1.1E-11 105.6 8.9 118 902-1070 91-209 (295)
282 3euj_A Chromosome partition pr 98.4 6.6E-08 2.2E-12 117.4 3.2 53 184-258 17-69 (483)
283 1ls1_A Signal recognition part 98.3 1.3E-06 4.6E-11 100.3 11.3 44 363-406 165-209 (295)
284 2px0_A Flagellar biosynthesis 98.3 6.2E-07 2.1E-11 103.1 8.5 140 909-1106 103-246 (296)
285 3tr0_A Guanylate kinase, GMP k 98.3 2.6E-08 8.9E-13 107.8 -3.2 73 191-288 1-76 (205)
286 2ius_A DNA translocase FTSK; n 98.3 1.3E-08 4.5E-13 124.4 -6.5 158 903-1085 159-343 (512)
287 1oix_A RAS-related protein RAB 98.3 8E-08 2.7E-12 103.0 0.1 38 1031-1070 152-189 (191)
288 2px0_A Flagellar biosynthesis 98.3 1.2E-06 4E-11 100.7 9.8 28 195-222 103-130 (296)
289 3k1j_A LON protease, ATP-depen 98.3 1.1E-08 3.6E-13 129.8 -8.3 161 896-1069 45-227 (604)
290 1ixz_A ATP-dependent metallopr 98.3 2.3E-10 8E-15 128.8 -21.6 129 897-1051 37-170 (254)
291 1iy2_A ATP-dependent metallopr 98.2 1.3E-09 4.3E-14 124.6 -16.8 125 897-1045 61-190 (278)
292 3tr0_A Guanylate kinase, GMP k 98.2 4.7E-08 1.6E-12 105.8 -3.6 64 905-974 1-67 (205)
293 2zr9_A Protein RECA, recombina 98.2 2.2E-06 7.6E-11 100.7 10.0 78 368-445 127-237 (349)
294 3euj_A Chromosome partition pr 98.2 1.5E-07 5.1E-12 114.3 0.0 51 899-952 18-68 (483)
295 1iy2_A ATP-dependent metallopr 98.2 2.9E-09 9.9E-14 121.6 -14.5 76 185-285 63-142 (278)
296 1ixz_A ATP-dependent metallopr 98.2 4.3E-09 1.5E-13 118.4 -14.2 75 185-284 39-117 (254)
297 1oix_A RAS-related protein RAB 98.2 3.4E-07 1.2E-11 98.1 1.0 43 361-405 146-188 (191)
298 3hr8_A Protein RECA; alpha and 98.1 2.1E-06 7.3E-11 100.6 7.3 31 192-222 56-86 (356)
299 2ius_A DNA translocase FTSK; n 98.1 3.5E-07 1.2E-11 111.9 0.0 82 338-424 248-345 (512)
300 2f9l_A RAB11B, member RAS onco 98.0 3.4E-06 1.1E-10 90.7 5.1 37 1033-1071 130-166 (199)
301 3lnc_A Guanylate kinase, GMP k 98.0 1.6E-06 5.4E-11 96.0 2.3 39 184-222 14-53 (231)
302 2ce7_A Cell division protein F 98.0 4.3E-06 1.5E-10 101.9 5.5 59 1027-1085 93-165 (476)
303 2ce7_A Cell division protein F 98.0 1.5E-05 5.1E-10 97.2 10.1 59 363-421 93-164 (476)
304 1svm_A Large T antigen; AAA+ f 98.0 2.3E-08 7.7E-13 118.5 -14.4 144 898-1053 156-312 (377)
305 4a1f_A DNAB helicase, replicat 97.9 1.5E-05 5E-10 92.9 9.3 60 361-437 110-170 (338)
306 2qtf_A Protein HFLX, GTP-bindi 97.9 1E-05 3.4E-10 95.7 8.0 148 913-1072 181-353 (364)
307 1qhl_A Protein (cell division 97.9 3.4E-07 1.2E-11 100.8 -4.4 59 191-271 22-91 (227)
308 3lnc_A Guanylate kinase, GMP k 97.9 2.1E-06 7.2E-11 94.9 1.9 39 898-936 14-53 (231)
309 4eun_A Thermoresistant glucoki 97.9 6.3E-07 2.1E-11 96.9 -2.6 56 905-966 23-80 (200)
310 4eun_A Thermoresistant glucoki 97.9 6.2E-07 2.1E-11 96.9 -3.6 68 192-284 24-93 (200)
311 3hr8_A Protein RECA; alpha and 97.8 2.4E-06 8.3E-11 100.1 0.4 58 907-966 57-115 (356)
312 2qtf_A Protein HFLX, GTP-bindi 97.8 1.2E-05 4.2E-10 95.0 6.3 166 199-408 181-353 (364)
313 2xau_A PRE-mRNA-splicing facto 97.8 6.7E-06 2.3E-10 106.6 4.1 73 1024-1097 190-264 (773)
314 1qhl_A Protein (cell division 97.8 6.3E-07 2.1E-11 98.7 -5.9 59 905-966 22-91 (227)
315 2e87_A Hypothetical protein PH 97.7 3.6E-05 1.2E-09 90.9 8.1 59 1024-1084 231-292 (357)
316 2f9l_A RAB11B, member RAS onco 97.7 2.6E-05 8.8E-10 83.8 6.3 38 368-407 129-166 (199)
317 3vaa_A Shikimate kinase, SK; s 97.7 1.3E-05 4.4E-10 86.4 3.0 40 182-221 10-49 (199)
318 4a1f_A DNAB helicase, replicat 97.7 1.3E-05 4.5E-10 93.2 3.0 127 900-1081 35-163 (338)
319 3kta_A Chromosome segregation 97.6 2.1E-05 7.2E-10 83.2 3.8 35 188-223 18-52 (182)
320 1zu4_A FTSY; GTPase, signal re 97.6 1.3E-05 4.4E-10 93.1 1.5 80 186-286 94-186 (320)
321 2dhr_A FTSH; AAA+ protein, hex 97.6 1.2E-06 4.1E-11 107.4 -7.6 75 185-284 54-132 (499)
322 2dy1_A Elongation factor G; tr 97.5 2.9E-05 9.9E-10 99.1 3.3 132 906-1086 4-138 (665)
323 2j41_A Guanylate kinase; GMP, 97.5 2.9E-05 9.8E-10 83.7 2.5 29 907-935 2-30 (207)
324 4e22_A Cytidylate kinase; P-lo 97.5 1.2E-05 4.2E-10 90.2 -0.8 64 185-272 18-96 (252)
325 3uie_A Adenylyl-sulfate kinase 97.4 1.4E-05 4.8E-10 86.2 -1.2 39 184-222 12-50 (200)
326 2j41_A Guanylate kinase; GMP, 97.4 5.6E-05 1.9E-09 81.4 3.5 31 193-223 2-32 (207)
327 3vaa_A Shikimate kinase, SK; s 97.4 5.9E-05 2E-09 81.2 3.1 38 898-935 12-49 (199)
328 1fnn_A CDC6P, cell division co 97.4 0.00048 1.6E-08 81.6 11.2 44 1041-1085 124-170 (389)
329 3bh0_A DNAB-like replicative h 97.4 0.00042 1.4E-08 80.3 10.3 39 182-220 53-91 (315)
330 2dhr_A FTSH; AAA+ protein, hex 97.4 8.4E-07 2.9E-11 108.7 -13.1 130 898-1053 53-187 (499)
331 3nwj_A ATSK2; P loop, shikimat 97.4 9.2E-06 3.1E-10 90.9 -3.7 39 897-935 31-72 (250)
332 3nwj_A ATSK2; P loop, shikimat 97.4 1.6E-05 5.3E-10 89.0 -1.9 39 183-221 31-72 (250)
333 1kgd_A CASK, peripheral plasma 97.4 7.2E-05 2.5E-09 79.2 3.3 28 195-222 3-30 (180)
334 3kta_A Chromosome segregation 97.4 4.6E-05 1.6E-09 80.6 1.7 32 902-934 18-49 (182)
335 3a00_A Guanylate kinase, GMP k 97.4 5.9E-05 2E-09 80.3 2.5 27 197-223 1-27 (186)
336 1jjv_A Dephospho-COA kinase; P 97.3 3.5E-05 1.2E-09 83.3 0.4 70 1026-1099 61-131 (206)
337 2xau_A PRE-mRNA-splicing facto 97.3 0.00014 4.7E-09 94.3 6.1 70 361-431 191-261 (773)
338 2e87_A Hypothetical protein PH 97.3 0.00031 1.1E-08 82.8 8.3 56 360-418 231-287 (357)
339 3t34_A Dynamin-related protein 97.3 1.5E-05 5.2E-10 94.2 -3.1 57 1025-1082 155-212 (360)
340 1svm_A Large T antigen; AAA+ f 97.3 3.9E-05 1.3E-09 90.8 0.4 38 184-221 156-193 (377)
341 4e22_A Cytidylate kinase; P-lo 97.3 2.9E-05 1E-09 87.0 -0.7 57 909-967 25-96 (252)
342 3b9p_A CG5977-PA, isoform A; A 97.3 0.001 3.6E-08 75.9 11.7 71 1026-1096 97-184 (297)
343 1v5w_A DMC1, meiotic recombina 97.3 0.00081 2.8E-08 78.8 10.9 28 906-933 117-144 (343)
344 3a00_A Guanylate kinase, GMP k 97.2 8.3E-05 2.8E-09 79.2 1.8 26 911-936 1-26 (186)
345 1ega_A Protein (GTP-binding pr 97.2 0.00027 9.2E-09 81.3 6.2 63 1025-1095 101-169 (301)
346 1zu4_A FTSY; GTPase, signal re 97.2 4.2E-05 1.4E-09 88.7 -0.7 50 900-951 94-143 (320)
347 2vp4_A Deoxynucleoside kinase; 97.2 9.4E-05 3.2E-09 81.6 1.9 38 908-951 17-54 (230)
348 1kgd_A CASK, peripheral plasma 97.2 0.00012 3.9E-09 77.6 2.5 38 909-947 3-40 (180)
349 3tau_A Guanylate kinase, GMP k 97.2 0.00016 5.3E-09 78.6 3.5 29 195-223 6-34 (208)
350 1knq_A Gluconate kinase; ALFA/ 97.2 0.00015 5E-09 76.1 3.2 27 195-221 6-32 (175)
351 2z43_A DNA repair and recombin 97.1 0.00083 2.8E-08 78.1 9.5 55 1029-1083 187-257 (324)
352 2vp4_A Deoxynucleoside kinase; 97.1 0.00015 5.3E-09 79.9 2.9 30 191-220 14-43 (230)
353 3b9p_A CG5977-PA, isoform A; A 97.1 0.0022 7.6E-08 73.1 12.5 27 195-221 52-78 (297)
354 3bh0_A DNAB-like replicative h 97.1 0.00022 7.5E-09 82.7 3.7 130 900-1082 57-189 (315)
355 1v5w_A DMC1, meiotic recombina 97.1 0.0023 8E-08 74.9 12.1 35 186-220 110-145 (343)
356 2z43_A DNA repair and recombin 97.0 0.0018 6.3E-08 75.1 11.0 36 186-221 95-131 (324)
357 1rz3_A Hypothetical protein rb 97.0 0.00022 7.7E-09 76.8 2.9 30 194-223 19-48 (201)
358 3uie_A Adenylyl-sulfate kinase 97.0 6.1E-05 2.1E-09 81.1 -1.8 48 900-950 14-63 (200)
359 2dy1_A Elongation factor G; tr 97.0 0.00013 4.3E-09 93.2 0.5 31 192-222 4-34 (665)
360 3t34_A Dynamin-related protein 97.0 0.0011 3.9E-08 78.1 8.7 34 184-220 24-57 (360)
361 3tau_A Guanylate kinase, GMP k 96.9 0.00031 1.1E-08 76.1 2.9 28 909-936 6-33 (208)
362 3ney_A 55 kDa erythrocyte memb 96.9 0.00036 1.2E-08 74.9 3.1 28 195-222 17-44 (197)
363 2qt1_A Nicotinamide riboside k 96.9 0.00051 1.7E-08 74.2 3.8 29 907-935 17-45 (207)
364 2z4s_A Chromosomal replication 96.8 0.00059 2E-08 82.8 4.7 70 1041-1111 193-264 (440)
365 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00062 2.1E-08 69.8 3.8 31 189-220 16-46 (149)
366 3cf0_A Transitional endoplasmi 96.8 0.0042 1.4E-07 71.2 11.3 28 194-221 46-73 (301)
367 2z4s_A Chromosomal replication 96.8 0.00052 1.8E-08 83.3 3.6 69 377-446 193-263 (440)
368 1fnn_A CDC6P, cell division co 96.8 0.0076 2.6E-07 71.2 13.6 24 199-222 46-69 (389)
369 1kag_A SKI, shikimate kinase I 96.8 0.00045 1.6E-08 72.1 2.6 26 196-221 3-28 (173)
370 2qby_A CDC6 homolog 1, cell di 96.8 0.00046 1.6E-08 81.4 2.9 26 909-934 43-68 (386)
371 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00056 1.9E-08 70.1 2.9 29 903-932 16-44 (149)
372 3tqc_A Pantothenate kinase; bi 96.7 0.00021 7.2E-09 82.6 -0.8 24 199-222 94-117 (321)
373 3cr8_A Sulfate adenylyltranfer 96.7 0.00044 1.5E-08 85.7 1.8 31 193-223 365-395 (552)
374 3ney_A 55 kDa erythrocyte memb 96.6 0.00058 2E-08 73.2 2.3 28 908-935 16-43 (197)
375 2qt1_A Nicotinamide riboside k 96.6 0.00079 2.7E-08 72.6 3.0 29 193-221 17-45 (207)
376 1u94_A RECA protein, recombina 96.6 0.034 1.1E-06 65.2 16.7 30 192-221 58-87 (356)
377 1knq_A Gluconate kinase; ALFA/ 96.6 0.00073 2.5E-08 70.7 2.3 36 909-950 6-41 (175)
378 1ypw_A Transitional endoplasmi 96.5 0.0017 5.8E-08 84.7 5.8 31 192-222 233-263 (806)
379 1ypw_A Transitional endoplasmi 96.5 0.0014 4.8E-08 85.4 4.8 30 907-936 234-263 (806)
380 3kl4_A SRP54, signal recogniti 96.5 0.003 1E-07 75.8 7.2 25 910-934 96-120 (433)
381 4eaq_A DTMP kinase, thymidylat 96.5 0.0011 3.9E-08 72.9 3.1 36 187-222 13-51 (229)
382 3cf0_A Transitional endoplasmi 96.4 0.0022 7.5E-08 73.6 5.6 28 908-935 46-73 (301)
383 2p67_A LAO/AO transport system 96.4 0.00046 1.6E-08 80.9 -0.3 38 185-222 44-81 (341)
384 3tqc_A Pantothenate kinase; bi 96.4 0.00013 4.4E-09 84.4 -5.1 40 896-935 71-116 (321)
385 1kag_A SKI, shikimate kinase I 96.4 0.00097 3.3E-08 69.5 1.9 26 910-935 3-28 (173)
386 4fcw_A Chaperone protein CLPB; 96.4 0.015 5E-07 66.6 11.9 27 196-222 46-72 (311)
387 2www_A Methylmalonic aciduria 96.4 0.0014 4.6E-08 77.1 3.2 29 195-223 72-100 (349)
388 3kl4_A SRP54, signal recogniti 96.4 0.0074 2.5E-07 72.4 9.6 28 196-223 96-123 (433)
389 2q6t_A DNAB replication FORK h 96.3 0.0026 8.8E-08 77.3 5.0 154 900-1082 189-361 (444)
390 2gj8_A MNME, tRNA modification 96.2 0.0039 1.3E-07 65.0 5.4 26 909-934 2-27 (172)
391 1rz3_A Hypothetical protein rb 96.2 0.0015 5.2E-08 70.2 2.3 28 908-935 19-46 (201)
392 3cr8_A Sulfate adenylyltranfer 96.2 0.00082 2.8E-08 83.3 -0.0 41 908-950 366-408 (552)
393 2q6t_A DNAB replication FORK h 96.2 0.013 4.4E-07 71.1 10.5 39 183-221 186-224 (444)
394 2pez_A Bifunctional 3'-phospho 96.1 0.0024 8.1E-08 67.2 3.3 28 195-222 3-30 (179)
395 3qks_A DNA double-strand break 96.1 0.0022 7.5E-08 69.2 2.9 29 903-932 16-44 (203)
396 3qks_A DNA double-strand break 96.1 0.0029 9.8E-08 68.3 3.8 32 189-221 16-47 (203)
397 3h4m_A Proteasome-activating n 96.1 0.011 3.8E-07 66.7 8.8 27 195-221 49-75 (285)
398 1cke_A CK, MSSA, protein (cyti 96.0 0.0025 8.7E-08 69.5 3.1 25 197-221 5-29 (227)
399 2qor_A Guanylate kinase; phosp 96.0 0.0024 8.1E-08 68.8 2.6 28 194-221 9-36 (204)
400 2qby_A CDC6 homolog 1, cell di 96.0 0.0029 9.8E-08 74.6 3.5 28 195-222 43-70 (386)
401 3lxx_A GTPase IMAP family memb 96.0 0.021 7.3E-07 62.8 10.3 42 1041-1082 111-154 (239)
402 1m7g_A Adenylylsulfate kinase; 96.0 0.0024 8.3E-08 69.1 2.5 29 194-222 22-50 (211)
403 3llm_A ATP-dependent RNA helic 96.0 0.016 5.6E-07 63.7 9.3 66 1026-1093 162-228 (235)
404 1y63_A LMAJ004144AAA protein; 95.9 0.003 1E-07 66.9 3.0 32 189-220 2-33 (184)
405 1m2o_B GTP-binding protein SAR 95.9 0.0047 1.6E-07 65.5 4.5 35 899-934 12-46 (190)
406 3h4m_A Proteasome-activating n 95.9 0.0078 2.7E-07 68.1 6.6 27 909-935 49-75 (285)
407 1mky_A Probable GTP-binding pr 95.9 0.0052 1.8E-07 74.4 5.3 80 198-286 181-263 (439)
408 4eaq_A DTMP kinase, thymidylat 95.9 0.003 1E-07 69.5 2.9 36 900-935 12-50 (229)
409 3m6a_A ATP-dependent protease 95.9 0.0017 5.9E-08 80.8 1.0 36 186-222 98-133 (543)
410 1np6_A Molybdopterin-guanine d 95.8 0.0054 1.8E-07 64.5 4.0 25 198-222 7-31 (174)
411 1u94_A RECA protein, recombina 95.8 0.017 5.9E-07 67.7 8.7 27 907-933 59-85 (356)
412 2i1q_A DNA repair and recombin 95.8 0.024 8.1E-07 65.6 9.9 28 906-933 93-120 (322)
413 1l8q_A Chromosomal replication 95.7 0.0092 3.2E-07 69.0 6.4 47 376-423 96-143 (324)
414 2gj8_A MNME, tRNA modification 95.7 0.0048 1.6E-07 64.3 3.3 27 195-221 2-28 (172)
415 2p67_A LAO/AO transport system 95.7 0.00061 2.1E-08 79.8 -4.0 38 897-934 42-79 (341)
416 1mky_A Probable GTP-binding pr 95.7 0.0061 2.1E-07 73.9 4.5 38 913-950 182-229 (439)
417 3llm_A ATP-dependent RNA helic 95.6 0.0049 1.7E-07 67.9 3.3 66 362-430 162-228 (235)
418 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0014 4.8E-08 76.2 -1.3 37 186-222 11-49 (359)
419 3bgw_A DNAB-like replicative h 95.6 0.0078 2.7E-07 72.9 5.0 33 901-933 187-219 (444)
420 3ice_A Transcription terminati 95.6 0.0039 1.3E-07 72.8 2.1 34 189-222 166-199 (422)
421 2pez_A Bifunctional 3'-phospho 95.5 0.0047 1.6E-07 64.8 2.6 27 909-935 3-29 (179)
422 2qor_A Guanylate kinase; phosp 95.5 0.0044 1.5E-07 66.7 2.2 28 908-935 9-36 (204)
423 3ice_A Transcription terminati 95.5 0.0017 5.7E-08 75.9 -1.2 32 903-934 166-197 (422)
424 2yvu_A Probable adenylyl-sulfa 95.5 0.0061 2.1E-07 64.4 3.2 28 195-222 11-38 (186)
425 2b8t_A Thymidine kinase; deoxy 95.5 0.018 6.2E-07 62.9 7.0 53 1042-1099 89-150 (223)
426 1l8q_A Chromosomal replication 95.5 0.018 6.2E-07 66.5 7.4 45 1040-1084 96-141 (324)
427 1jjv_A Dephospho-COA kinase; P 95.5 0.0063 2.1E-07 65.4 3.2 69 362-436 61-131 (206)
428 1m2o_B GTP-binding protein SAR 95.4 0.006 2.1E-07 64.6 3.0 35 185-220 12-46 (190)
429 3d8b_A Fidgetin-like protein 1 95.4 0.039 1.3E-06 64.8 10.2 27 909-935 115-141 (357)
430 1cke_A CK, MSSA, protein (cyti 95.4 0.0049 1.7E-07 67.1 2.3 57 911-967 5-74 (227)
431 2w58_A DNAI, primosome compone 95.4 0.0073 2.5E-07 64.6 3.5 113 910-1092 53-167 (202)
432 2b8t_A Thymidine kinase; deoxy 95.4 0.048 1.6E-06 59.6 10.0 53 378-436 89-150 (223)
433 2p5t_B PEZT; postsegregational 95.3 0.0046 1.6E-07 69.1 1.7 29 193-221 28-56 (253)
434 2v1u_A Cell division control p 95.3 0.017 5.9E-07 67.9 6.7 26 909-934 42-67 (387)
435 1f6b_A SAR1; gtpases, N-termin 95.3 0.0024 8.1E-08 68.3 -0.8 35 185-220 14-48 (198)
436 1xp8_A RECA protein, recombina 95.3 0.16 5.6E-06 59.6 14.8 29 192-220 69-97 (366)
437 1y63_A LMAJ004144AAA protein; 95.3 0.0063 2.2E-07 64.3 2.5 32 903-934 2-33 (184)
438 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.068 2.3E-06 59.2 11.0 27 195-221 37-63 (262)
439 2qag_A Septin-2, protein NEDD5 95.2 0.0013 4.4E-08 77.6 -3.3 33 897-935 29-61 (361)
440 1ega_A Protein (GTP-binding pr 95.2 0.0064 2.2E-07 69.8 2.5 44 361-411 101-147 (301)
441 3m6a_A ATP-dependent protease 95.2 0.0023 8E-08 79.6 -1.3 48 899-949 97-144 (543)
442 1f6b_A SAR1; gtpases, N-termin 95.2 0.0029 9.9E-08 67.6 -0.4 35 899-934 14-48 (198)
443 2if2_A Dephospho-COA kinase; a 95.2 0.0078 2.7E-07 64.5 2.9 21 199-219 3-23 (204)
444 3t61_A Gluconokinase; PSI-biol 95.2 0.0066 2.3E-07 65.0 2.3 25 197-221 18-42 (202)
445 3d8b_A Fidgetin-like protein 1 95.2 0.1 3.6E-06 61.1 12.8 27 195-221 115-141 (357)
446 3cm0_A Adenylate kinase; ATP-b 95.2 0.0091 3.1E-07 62.8 3.3 27 195-221 2-28 (186)
447 2ffh_A Protein (FFH); SRP54, s 95.2 0.0079 2.7E-07 72.0 3.1 34 188-223 91-124 (425)
448 2www_A Methylmalonic aciduria 95.1 0.0073 2.5E-07 70.8 2.6 39 909-949 72-110 (349)
449 1j8m_F SRP54, signal recogniti 95.1 0.0059 2E-07 69.9 1.6 34 188-222 89-123 (297)
450 3lxw_A GTPase IMAP family memb 95.0 0.025 8.5E-07 62.8 6.5 114 913-1082 23-147 (247)
451 1qhx_A CPT, protein (chloramph 95.0 0.011 3.6E-07 61.8 3.3 25 197-221 3-27 (178)
452 3kb2_A SPBC2 prophage-derived 95.0 0.009 3.1E-07 61.8 2.7 23 199-221 3-25 (173)
453 2qag_A Septin-2, protein NEDD5 95.0 0.0026 9E-08 75.0 -1.6 32 184-221 30-61 (361)
454 1lv7_A FTSH; alpha/beta domain 95.0 0.0073 2.5E-07 67.3 2.1 34 186-221 36-69 (257)
455 2wji_A Ferrous iron transport 95.0 0.011 3.9E-07 60.8 3.2 23 199-221 5-27 (165)
456 2wjg_A FEOB, ferrous iron tran 95.0 0.02 6.9E-07 59.9 5.2 22 913-934 9-30 (188)
457 1sxj_C Activator 1 40 kDa subu 94.9 0.0031 1.1E-07 73.7 -1.5 39 184-222 31-71 (340)
458 2wji_A Ferrous iron transport 94.8 0.012 4E-07 60.7 2.9 23 913-935 5-27 (165)
459 2if2_A Dephospho-COA kinase; a 94.8 0.0088 3E-07 64.1 2.0 21 913-933 3-23 (204)
460 3bgw_A DNAB-like replicative h 94.8 0.095 3.2E-06 63.4 11.3 38 183-220 183-220 (444)
461 2ohf_A Protein OLA1, GTP-bindi 94.8 0.012 4E-07 69.8 3.1 31 190-220 15-45 (396)
462 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.15 5.3E-06 58.7 12.6 27 909-935 43-69 (322)
463 3r20_A Cytidylate kinase; stru 94.7 0.012 4.1E-07 64.7 2.9 24 198-221 10-33 (233)
464 3cmw_A Protein RECA, recombina 94.7 0.28 9.4E-06 67.8 16.6 38 184-221 368-407 (1706)
465 1q57_A DNA primase/helicase; d 94.7 0.25 8.5E-06 60.7 14.9 38 183-220 228-265 (503)
466 2rhm_A Putative kinase; P-loop 94.7 0.014 4.8E-07 61.6 3.1 27 195-221 3-29 (193)
467 4b4t_J 26S protease regulatory 94.7 0.14 4.8E-06 60.6 11.8 26 196-221 181-206 (405)
468 4b4t_L 26S protease subunit RP 94.6 0.13 4.5E-06 61.7 11.7 28 194-221 212-239 (437)
469 1q3t_A Cytidylate kinase; nucl 94.6 0.014 4.7E-07 64.3 3.0 28 194-221 13-40 (236)
470 1np6_A Molybdopterin-guanine d 94.6 0.014 4.8E-07 61.3 2.8 38 912-949 7-45 (174)
471 1kht_A Adenylate kinase; phosp 94.5 0.016 5.6E-07 60.9 3.3 25 197-221 3-27 (192)
472 2ze6_A Isopentenyl transferase 94.5 0.016 5.3E-07 64.8 3.1 24 198-221 2-25 (253)
473 1q57_A DNA primase/helicase; d 94.4 0.15 5.2E-06 62.6 12.1 33 901-933 232-264 (503)
474 4b4t_H 26S protease regulatory 94.4 0.094 3.2E-06 62.9 9.8 28 194-221 240-267 (467)
475 3io5_A Recombination and repai 94.4 0.16 5.6E-06 57.9 11.0 27 192-219 24-50 (333)
476 2zej_A Dardarin, leucine-rich 94.3 0.018 6.2E-07 60.4 3.0 23 199-221 4-26 (184)
477 2yvu_A Probable adenylyl-sulfa 94.3 0.019 6.5E-07 60.5 3.0 28 908-935 10-37 (186)
478 3trf_A Shikimate kinase, SK; a 94.3 0.018 6.3E-07 60.4 2.9 26 196-221 4-29 (185)
479 2ga8_A Hypothetical 39.9 kDa p 94.3 0.0035 1.2E-07 72.8 -2.9 36 899-934 10-47 (359)
480 1m7g_A Adenylylsulfate kinase; 94.3 0.014 4.8E-07 63.0 2.0 28 908-935 22-49 (211)
481 2v54_A DTMP kinase, thymidylat 94.3 0.021 7.2E-07 60.9 3.4 26 196-221 3-28 (204)
482 2ohf_A Protein OLA1, GTP-bindi 94.3 0.015 5E-07 69.0 2.2 28 907-934 18-45 (396)
483 2wjg_A FEOB, ferrous iron tran 94.2 0.021 7.1E-07 59.8 3.2 22 199-220 9-30 (188)
484 3cmw_A Protein RECA, recombina 94.2 0.42 1.4E-05 66.1 16.6 35 187-221 720-756 (1706)
485 2zej_A Dardarin, leucine-rich 94.2 0.02 7E-07 60.0 3.1 22 913-934 4-25 (184)
486 2plr_A DTMP kinase, probable t 94.2 0.024 8.3E-07 60.6 3.7 26 196-221 3-28 (213)
487 4b4t_K 26S protease regulatory 94.2 0.2 6.7E-06 60.0 11.9 28 194-221 203-230 (428)
488 3hu3_A Transitional endoplasmi 94.2 0.054 1.8E-06 66.3 7.1 28 194-221 235-262 (489)
489 1ex7_A Guanylate kinase; subst 94.1 0.018 6.2E-07 61.1 2.5 25 198-222 2-26 (186)
490 3cm0_A Adenylate kinase; ATP-b 94.1 0.019 6.4E-07 60.3 2.6 25 909-933 2-26 (186)
491 1gvn_B Zeta; postsegregational 94.1 0.023 8E-07 64.6 3.5 27 195-221 31-57 (287)
492 3lw7_A Adenylate kinase relate 94.1 0.023 7.8E-07 58.6 3.1 19 199-217 3-21 (179)
493 1ly1_A Polynucleotide kinase; 94.1 0.025 8.6E-07 58.8 3.5 22 198-219 3-24 (181)
494 3t61_A Gluconokinase; PSI-biol 94.1 0.018 6.1E-07 61.6 2.4 24 911-934 18-41 (202)
495 2jaq_A Deoxyguanosine kinase; 94.1 0.021 7.2E-07 60.8 2.9 23 199-221 2-24 (205)
496 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.085 2.9E-06 58.4 7.9 26 909-934 37-62 (262)
497 1via_A Shikimate kinase; struc 94.0 0.021 7.1E-07 59.5 2.6 23 199-221 6-28 (175)
498 2qp9_X Vacuolar protein sortin 94.0 0.14 4.8E-06 59.9 10.0 27 195-221 82-108 (355)
499 3iij_A Coilin-interacting nucl 94.0 0.022 7.6E-07 59.6 2.8 26 196-221 10-35 (180)
500 3io5_A Recombination and repai 93.9 0.044 1.5E-06 62.6 5.2 25 907-932 25-49 (333)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-73 Score=776.82 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=179.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|+|++++++.. ...++|+|||++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEEh
Confidence 58999998876421 234699999999999999999999999999999999998663 479999999987
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1021 (1403)
+. ..+|+.++||||++.++.. |++|||.|+. .+.+.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 54 5678899999999998864 9999998763 122233 234778888877743 3577888655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
. +||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+++|+++. ...||+|+||+ +
T Consensus 1216 ~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1216 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS-N 1290 (1321)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-S
T ss_pred c-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE-C
Confidence 4 699999999999999999999999999999999999999999999876 48999999999873 56799999998 5
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 899999984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-66 Score=701.80 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=172.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++.. .+..+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEc
Confidence 57889988765311 124599999999999999999999999999999999998764 489999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-------CcccccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-------PLRDALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.++ ..||+||+.++...+ ..+.+ .+++.++..++. +-.|+.+|..+
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC---CCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 43 44677899999999776 579999998753211 12222 234455554443 34566777543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..||||||||++|||||+++|+||+|||||||||+.++..|++.|++.. +|+|||+++|+++. + ..||++++|+ +
T Consensus 1170 -~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1170 -TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQ-N 1244 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEE-T
T ss_pred -CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999998864 59999999999974 4 6699999998 5
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999974
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.3e-56 Score=557.43 Aligned_cols=188 Identities=27% Similarity=0.332 Sum_probs=157.8
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
.|+++|+++++||++||+||||||||||+++|+|...+ .+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 68999999999999999999999999999999997653 3677765 23589999998777889999988
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
........ ...+.++++++.+++.+..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 65311110 112457889999999988887654 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCCCc
Q 037155 1060 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPLGR 1112 (1403)
Q Consensus 1060 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~~~ 1112 (1403)
+..+++.|++++ +.|.|||+++||++ .+...||++++|+. .|++...|+...
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999986 57788999999973 266777888643
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-55 Score=547.24 Aligned_cols=188 Identities=26% Similarity=0.329 Sum_probs=156.8
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 68999999999999999999999999999999997653 3677764 23589999998777889999887
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
......... ..+.++++++.+++.+..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCCC-------HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 653111110 12347789999999877777654 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCCCc
Q 037155 1060 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPLGR 1112 (1403)
Q Consensus 1060 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~~~ 1112 (1403)
+..+++.|++++ +.|.|||++|||++ ++...||++++|++ .|+++..|+..+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999999999987 45999999999986 57789999999973 267777888743
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-54 Score=536.14 Aligned_cols=203 Identities=22% Similarity=0.251 Sum_probs=162.1
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
..|+++|++|++||++||+||||||||||+++|+|...+ .+|+|.+++. .++|++|+....+..||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 357888999999999999999999999999999997653 3788887653 47999998776678999999
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+.+...... .. ....++++++.++|.+..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 351 l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHhhhhcc--ch----hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 987421111 01 12346788999999888887654 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCCCcchhHHHHHHHhC
Q 037155 1059 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG-GRVIYAGPLGRESHKLIEYFEAV 1124 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~g-G~~~~~g~~~~~~~~~~~~f~~~ 1124 (1403)
++..+++.|+++++ .|+|||++|||++ ++...||++++|+.+ |.....++.......+..++..+
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 99999999999975 5899999999986 577889999999731 34455555433333445555443
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-53 Score=548.32 Aligned_cols=218 Identities=23% Similarity=0.264 Sum_probs=138.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHH---------------------HHHhccccccchhhcccchhhhhhhcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLHENLRVRFQSNKFLIIRIWK 241 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL---------------------~~LaG~~~~~~~~~~~~~~~~~~~~~~ 241 (1403)
..++|+|||++|++||+++|+||||||||||| +.+.|...++.+.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~-------------- 95 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDA-------------- 95 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSE--------------
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccc--------------
Confidence 35689999999999999999999999999997 6666655443110
Q ss_pred CCCcceEEEECCccCCCCCccceEEEeccCCCC-------------------CCCCCHHHHHHhhcccccccchhhHHHH
Q 037155 242 TEQASGKITYCGHELNEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRYELLAE 302 (1403)
Q Consensus 242 ~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~-------------------~~~lTVrE~l~f~~~~~~~~~~~~~~~~ 302 (1403)
.....|.|.++|.+.... +++.++||+|...+ ++.+||+||+.+.......
T Consensus 96 i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~--------- 165 (670)
T 3ux8_A 96 IEGLSPAISIDQKTTSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT--------- 165 (670)
T ss_dssp EESCCCEEEESSCC------CCBHHHHTTCC-------------------------CC----------------------
T ss_pred eeccccceEecCchhhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc---------
Confidence 001256788887654332 33456666664332 4578999999874221100
Q ss_pred hhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCc-
Q 037155 303 LSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK- 380 (1403)
Q Consensus 303 ~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~- 380 (1403)
..+... .+...+ +.... -.+++.+||++. .|..+++ |||||||||+|||||+.+|+
T Consensus 166 --~~~~~~-------~~~~~~-------~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~ 223 (670)
T 3ux8_A 166 --EKEAQI-------ARLILR-------EIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTG 223 (670)
T ss_dssp -----------------------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCS
T ss_pred --hhhhHH-------HHHHHH-------HHHHH-HHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCC
Confidence 000000 000000 00011 135888999875 6788876 99999999999999999988
Q ss_pred -EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhH
Q 037155 381 -VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNV 449 (1403)
Q Consensus 381 -illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~ 449 (1403)
+|+|||||+|||+.++.++.+.|+++.+ .|.|+|++.|... ....+|+|++| ++|++++.|+++++
T Consensus 224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 224 VLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999999999999999999975 4888888776543 45679999999 89999999998776
No 7
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.2e-53 Score=550.59 Aligned_cols=184 Identities=22% Similarity=0.283 Sum_probs=148.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ..
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------------------------G~i--~g~~~~~---~~ 495 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------------------------GQV--DGFPTQE---EC 495 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------------------------TCS--TTCCCTT---TS
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------------------------CCc--CCCcccc---ce
Confidence 469999999999999999999999999999999995 111 2322111 12
Q ss_pred eEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++|++|+. .+++.+||.|++.+ ...+. ...++.+++.
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~---------------------------------------~~~v~~~L~~ 534 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT---------------------------------------KEAIKDKLIE 534 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC---------------------------------------HHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH---------------------------------------HHHHHHHHHH
Confidence 368999874 67889999999975 11100 0124567899
Q ss_pred cCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 343 LGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 343 lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+||+ +..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ .+.|+|++.| .
T Consensus 535 lgL~~~~~~~~~~~-----LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-d 604 (986)
T 2iw3_A 535 FGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-D 604 (986)
T ss_dssp TTCCHHHHHSBGGG-----CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-C
T ss_pred cCCChhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEEC-C
Confidence 9995 677888876 999999999999999999999999999999999999999999987 3778777655 5
Q ss_pred chhHHhhcCEEEEEcCCeEE-EecChhhHH
Q 037155 422 APETYDLFDDIILISEGQIV-YHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv-~~G~~~~~~ 450 (1403)
..++.+++|+|++|++|+++ +.|+.+++.
T Consensus 605 l~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 605 SVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 56788899999999999997 789887653
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-52 Score=523.75 Aligned_cols=189 Identities=20% Similarity=0.208 Sum_probs=154.4
Q ss_pred eEeeeeEEEEeCC-----eEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCC
Q 037155 899 QLLHSVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 899 ~iL~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 973 (1403)
.+++|+|+++++| |++||+||||||||||+++|+|...+. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 4688889888888 789999999999999999999976532 4541 11 23589999987766678
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+|++.... +. .... ...++++++.++|.+..++.++ .|||||||||+|||+|+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--cccc---HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875321 11 1111 2346789999999988887654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCCCc
Q 037155 1054 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYAGPLGR 1112 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~-gG~~~~~g~~~~ 1112 (1403)
|||+.++..++++|++++ +.|.|||++|||++ ++...+|++++|+. .|+++..|++..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999986 45999999999986 57788999999984 278888888754
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.3e-41 Score=391.00 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=188.2
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
-++++|+++.+... .+...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 47788887665311 1235799999999999999999999999999999999998764 489999999886
Q ss_pred Chh------hhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 037155 952 KQE------TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025 (1403)
Q Consensus 952 ~~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1025 (1403)
... ..++.+|||+|++.+++.+||+||+.|+...+. .+.++.+++++++++.+||.+..++.+ ..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 345666778999999999998888764 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||+|||||+.+|+||||||||||||+.++..++++|+++.+ .|+|||++||+++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999986 57788999999985 899
Q ss_pred EEecCCC
Q 037155 1105 IYAGPLG 1111 (1403)
Q Consensus 1105 ~~~g~~~ 1111 (1403)
++.|+..
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999853
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.5e-40 Score=369.75 Aligned_cols=204 Identities=24% Similarity=0.365 Sum_probs=174.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---h----hcceeeEeecCCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---T----FARVSGYCEQTDIHS 970 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 970 (1403)
..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.+|||+|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 4699999999999999999999999999999999998764 489999999876431 1 134599999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
+.+||+||+.++...+.......++..+.+.++++.++|.+. .+..+ ..|||||||||+|||||+.+|++||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999998655432233455666778899999999874 36553 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+|||+.++..+++.|++++++ |+|||++||+++ +.+.||++++|++ |+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 999999999999999999999765 999999999975 4588999999985 8999888763
No 11
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-40 Score=422.23 Aligned_cols=197 Identities=26% Similarity=0.390 Sum_probs=145.2
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHH---------HhhcCCCC-Cc---eeE------EEEEEcCccCChh-----
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GDIKISGYPKKQE----- 954 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~-~~---~~~------G~i~i~g~~~~~~----- 954 (1403)
..|+|||++|++|++++|+|+||||||||+ +.+.+... .+ ... +.+.+++.+....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 369999999999999999999999999997 33333211 01 122 3355555442110
Q ss_pred -h--------------------------------------hcceeeEeecCCCCCCC-----------------------
Q 037155 955 -T--------------------------------------FARVSGYCEQTDIHSPH----------------------- 972 (1403)
Q Consensus 955 -~--------------------------------------~~~~~gyv~Q~~~~~~~----------------------- 972 (1403)
. ..+..||+.++..++|.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00124777777665553
Q ss_pred ---------CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 973 ---------VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 973 ---------lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
+||.|++.|.... .....+.++|+.+||.... .+. .+..|||||||||+||+||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq-~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQ-PATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTC-CSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccC-CccCCCHHHHHHHHHHHHHhhCC
Confidence 6778877764321 1123467899999996532 222 23479999999999999999876
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1044 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|++++|. +||++++.|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999975 456799999993 47999999985
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.7e-40 Score=389.57 Aligned_cols=204 Identities=26% Similarity=0.372 Sum_probs=181.2
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++..+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+|||+|++.++|++|
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 456799999999999999999999999999999999998764 489999999886432 23567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+. .+.++.+++++++++.++|.+..++.+. +|||||||||+|||||+.+|+||||||||||
T Consensus 92 V~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 92 VAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp HHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999999876642 3456667789999999999998887654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||+..+..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+..
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999755 999999999986 68889999999985 8999999853
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.9e-40 Score=375.30 Aligned_cols=216 Identities=25% Similarity=0.380 Sum_probs=183.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 367777776541 124599999999999999999999999999999999998664 489999999886
Q ss_pred C--h---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 037155 952 K--Q---ETFARVSGYCEQTDI-HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL 1025 (1403)
Q Consensus 952 ~--~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1025 (1403)
. . ..+++.+|||+|++. .+..+||+||+.|+.... ..+.++..++++++++.++|.+..++.++ .|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 3 2 234678999999863 445799999999987543 23455666779999999999988887654 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999997 47788999999985 899
Q ss_pred EEecCCC
Q 037155 1105 IYAGPLG 1111 (1403)
Q Consensus 1105 ~~~g~~~ 1111 (1403)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999853
No 14
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.7e-39 Score=415.27 Aligned_cols=195 Identities=28% Similarity=0.377 Sum_probs=148.5
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc-C----C-----CCCc---eeEE------EEEEcCccCChh------
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YIEG------DIKISGYPKKQE------ 954 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g----~-----~~~~---~~~G------~i~i~g~~~~~~------ 954 (1403)
.|+|||++|++|+++||+|+||||||||+++|. | . ..+| .+.| .|.++|.++...
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999864 1 0 1122 2334 588888775210
Q ss_pred h----------------hcceeeEeecCCCCC----------------------C-------------------------
Q 037155 955 T----------------FARVSGYCEQTDIHS----------------------P------------------------- 971 (1403)
Q Consensus 955 ~----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 971 (1403)
+ ..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0 123468887743221 1
Q ss_pred -------CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 972 -------HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 972 -------~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
.+||.|++.|... ... ...+.++++.++|.. ..+..+ ..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 111 123568999999986 455543 479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1044 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.||++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 347899999994 46899988874
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.9e-40 Score=365.67 Aligned_cols=200 Identities=24% Similarity=0.303 Sum_probs=173.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh------hhc-ceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE------TFA-RVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~-~~~gyv~Q~~~~ 969 (1403)
++.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... .++ +.+||++|++.+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 35799999999999999999999999999999999998764 489999999876421 122 569999999999
Q ss_pred CCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 970 SPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 970 ~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
++.+||+||+.+....+. ...++.++.++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+||
T Consensus 94 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLD 165 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFAD 165 (224)
T ss_dssp CTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred CCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999998765432 2334445678999999999988887644 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|||+|||+.++..+++.|++++++|+|||++||+++ .+ +.||++++|++ |++++.|+
T Consensus 166 EPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999877999999999975 34 78999999985 89998885
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.2e-40 Score=372.15 Aligned_cols=213 Identities=27% Similarity=0.364 Sum_probs=181.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 6777776543 345699999999999999999999999999999999998763 4899999998763
Q ss_pred --h---hhhcceeeEeecCCCCCCCCCHHHHHHHHH-hhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 037155 953 --Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSA-WLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLS 1026 (1403)
Q Consensus 953 --~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1026 (1403)
. ..+++.+|||+|++.+++.+||+||+.+.. ... ....++.++.++++++.++|.+..++.++ .||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCC
Confidence 1 234567999999999999999999999864 222 22334445678999999999988877644 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 56778999999985 79998
Q ss_pred ecCC
Q 037155 1107 AGPL 1110 (1403)
Q Consensus 1107 ~g~~ 1110 (1403)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8874
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-40 Score=388.36 Aligned_cols=204 Identities=26% Similarity=0.432 Sum_probs=178.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC----Ch-hhhcceeeEeecCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----KQ-ETFARVSGYCEQTDIHS 970 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~~~~~ 970 (1403)
+++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+. .. ...++.+|||+|+..++
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 456799999999999999999999999999999999998764 489999999875 21 23457799999999999
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|++||+||+.|+...+. ...++.+++++++++.++|.+..++.++ +|||||||||+|||||+.+|++|||||
T Consensus 93 p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp TTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999865432 2334556778999999999998888754 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1051 PTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
||||||+..+..+++.|+++. +.|+|||++|||++ ++...||++++|++ |+++..|+..
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999888765 56999999999986 67889999999985 8999999853
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-40 Score=372.78 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=181.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 5677776543 345799999999999999999999999999999999998763 4899999998764
Q ss_pred h----------------hhhcceeeEeecCCCCCCCCCHHHHHHHHH-hhhCCCCCcHHHHHHHHHHHHHHcCCCCc-cc
Q 037155 953 Q----------------ETFARVSGYCEQTDIHSPHVTLYESLLYSA-WLRLSSDVDTKKRKIFVDEVMELVELKPL-RD 1014 (1403)
Q Consensus 953 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~ 1014 (1403)
. ..+++.+|||+|++.+++.+||+||+.++. ..+ ....++.++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 124567999999999999999999999864 322 22334445678999999999887 77
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1015 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1015 ~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
+.++ .|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||+
T Consensus 149 ~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 7644 79999999999999999999999999999999999999999999999877999999999986 56778999
Q ss_pred EEEEecCcEEEEecCC
Q 037155 1095 LLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1095 i~ll~~gG~~~~~g~~ 1110 (1403)
+++|++ |++++.|+.
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 899988874
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.4e-40 Score=383.88 Aligned_cols=207 Identities=26% Similarity=0.334 Sum_probs=180.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
..++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---------------------~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---------------------TEGSVLVDGQELTTLSES 98 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECSSCCHH
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHH
Confidence 45799999999999999999999999999999999999865 58999999998876542
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+|||+|++.+++.+||+||+.|+.+..+... . +...++
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v 144 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRV 144 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHH
Confidence 4679999999999999999999999765433210 0 011245
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ |||||||||+|||||+.+|++|||||||||||+.++.+|.+.|+++.+..|.|+|+
T Consensus 145 ~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 145 TELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHHTCGGGTTCCTTT-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 6789999999999888876 99999999999999999999999999999999999999999999998777888888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|. ..++.++||+|++|++|++++.|+++++.
T Consensus 220 vTHd-l~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 220 ITHE-MDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp EESC-HHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred EecC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7664 45788899999999999999999999874
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-39 Score=368.32 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=181.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 16 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 16 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5677776543 345799999999999999999999999999999999998663 4899999998764
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 037155 953 Q--ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 953 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1030 (1403)
. ...++.+||++|++.+++.+||+||+.+...... ...++..+.++++++.++|.+..++.++ .||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~ 152 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 152 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 2 2345679999999999999999999998765432 2233344568899999999988887644 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999999999999999877999999999986 46677999999985 789988874
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.5e-39 Score=381.36 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=184.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 466777654320 345699999999999999999999999999999999998764 489999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 037155 952 KQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQR 1030 (1403)
Q Consensus 952 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1030 (1403)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.++ +||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 43 234577999999999999999999999987654 23345556779999999999998887654 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999754 999999999986 67789999999985 89999887
Q ss_pred C
Q 037155 1110 L 1110 (1403)
Q Consensus 1110 ~ 1110 (1403)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.3e-40 Score=371.13 Aligned_cols=216 Identities=25% Similarity=0.304 Sum_probs=181.3
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 8 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 8 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 6677776543 345699999999999999999999999999999999998764 4899999998764
Q ss_pred h----hhhcceeeEeecCCCCCCCCCHHHHHHHHHhh-hCCC---------CCcHHHHHHHHHHHHHHcCCCCccccccc
Q 037155 953 Q----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWL-RLSS---------DVDTKKRKIFVDEVMELVELKPLRDALVG 1018 (1403)
Q Consensus 953 ~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 1018 (1403)
. ...++.+||++|++.+++.+||+||+.+.... +... .....+..+.++++++.++|.+..++.++
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 3 12345799999999888999999999986533 1110 01223344568899999999988887654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1019 ~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
.|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|
T Consensus 153 -----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (257)
T 1g6h_A 153 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 226 (257)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999877999999999987 467789999999
Q ss_pred ecCcEEEEecCC
Q 037155 1099 KRGGRVIYAGPL 1110 (1403)
Q Consensus 1099 ~~gG~~~~~g~~ 1110 (1403)
++ |++++.|+.
T Consensus 227 ~~-G~i~~~g~~ 237 (257)
T 1g6h_A 227 FN-GQIIAEGRG 237 (257)
T ss_dssp ET-TEEEEEEES
T ss_pred EC-CEEEEEeCH
Confidence 85 789988875
No 23
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.3e-39 Score=413.85 Aligned_cols=106 Identities=27% Similarity=0.372 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 037155 998 IFVDEVMELVELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1073 (1403)
Q Consensus 998 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~---P~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1073 (1403)
+.+.++++.++|... .++. +..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|+++++.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357899999999863 3444 347999999999999999996 7999999999999999999999999999988
Q ss_pred CCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1074 GRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1074 g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
|.|||+++|+++ .+ +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999975 34 7899999994 46899998874
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-39 Score=380.91 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=178.3
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+|||+|+..++|++|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHhHCcEEEEecCcccCCCCC
Confidence 346799999999999999999999999999999999998764 489999999876432 23567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+. .+.++.+++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 92 VYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9999999865542 2345556778999999999998887644 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999754 999999999986 67889999999985 899998875
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.8e-39 Score=380.23 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccC----CCC
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL----NEF 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~----~~~ 259 (1403)
+++|+|||+.|++||+++|+|||||||||||++|+|+++| .+|+|.++|+++ ...
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---------------------~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP---------------------DSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEEEESSSCBC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC---------------------CCcEEEECCEECccccccc
Confidence 5699999999999999999999999999999999999865 589999999987 222
Q ss_pred Cc-cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 260 VP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 260 ~~-~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.+ ++.+|||+|++.++|.+||+||+.|+.+.++... .+ ...+++.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~--------------------~~--------------~~~~v~~ 121 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT--------------------AQ--------------ERQRIEA 121 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCS--------------------HH--------------HHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCh--------------------HH--------------HHHHHHH
Confidence 22 4789999999999999999999999865433211 00 1124567
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||++..|..+++ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..|.|+|++.
T Consensus 122 ~l~~~gL~~~~~r~~~~-----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vT 196 (359)
T 3fvq_A 122 MLELTGISELAGRYPHE-----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196 (359)
T ss_dssp HHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 89999999999988876 9999999999999999999999999999999999999999988888776788888766
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
| ...++..++|+|++|++|+++..|+++++.
T Consensus 197 H-d~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 197 H-DREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp C-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred C-CHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 5 555889999999999999999999999874
No 26
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2e-39 Score=381.24 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=177.1
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+|||+|+..++|++|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 346799999999999999999999999999999999998764 489999999886432 23567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+ ..+.++.+++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999975433 23334445678999999999998887654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999998754 999999999986 57789999999985 899998875
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.8e-39 Score=368.82 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=181.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++.+|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 36777777654 346799999999999999999999999999999999997653 379999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE 1028 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1028 (1403)
.. ...++.+||++|++.+++.+||+||+.++..... ..+.++.++++++.++|.+..++.++ .||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 43 3345679999999988889999999998764331 12234558899999999988887654 79999
Q ss_pred HHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1029 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1029 qrqRl~IA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57788999999985
Q ss_pred cEEEEecCCC
Q 037155 1102 GRVIYAGPLG 1111 (1403)
Q Consensus 1102 G~~~~~g~~~ 1111 (1403)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 8999999864
No 28
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.6e-39 Score=381.26 Aligned_cols=206 Identities=25% Similarity=0.364 Sum_probs=180.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
.++|+|||+.+++||+++|+|||||||||||++|+|+++| .+|+|.++|+++....+ +
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---------------------~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---------------------TSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTCCGGG
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC---------------------CCeEEEECCEECCCCCHHH
Confidence 5699999999999999999999999999999999999865 58999999998876544 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.++|.+||+||+.|+.+.++.. +. +...+++.+++.
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~ 120 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAK----------KE------------------------VINQRVNQVAEV 120 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCC----------HH------------------------HHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHH
Confidence 77999999999999999999999986543321 00 012245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+.+ |||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..|.|+|++.| ..
T Consensus 121 ~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~ 194 (381)
T 3rlf_A 121 LQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQ 194 (381)
T ss_dssp TTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CH
T ss_pred cCCchhhcCChhH-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CH
Confidence 9999999988876 99999999999999999999999999999999999999999999998766888887654 55
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 195 VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 6899999999999999999999999874
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.8e-39 Score=381.47 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=177.9
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcceeeEeecCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARVSGYCEQTDI 968 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~ 968 (1403)
+++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 346799999999999999999999999999999999998764 48999999987532 123567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
++|++||+||+.|+...+. .+.++.+++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|||
T Consensus 92 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999876542 3345556778999999999998887644 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 224 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999999999754 999999999986 67789999999985 899998875
No 30
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-39 Score=363.21 Aligned_cols=212 Identities=22% Similarity=0.346 Sum_probs=177.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 7 LEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 5677776543 335699999999999999999999999999999999998663 4899999998764
Q ss_pred hh---h-hcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCH
Q 037155 953 QE---T-FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVE-LKPLRDALVGLPGVNGLST 1027 (1403)
Q Consensus 953 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 1027 (1403)
.. . .++.+||++|++.+++.+||+||+.+...... ..++..+.++++++.++ |.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSg 142 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSG 142 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCH
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCH
Confidence 31 1 23459999999999999999999998642111 11233455788999995 887777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1028 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1028 GqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~ 220 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999976 57789999999985 789888
Q ss_pred cCC
Q 037155 1108 GPL 1110 (1403)
Q Consensus 1108 g~~ 1110 (1403)
|+.
T Consensus 221 g~~ 223 (240)
T 1ji0_A 221 GKA 223 (240)
T ss_dssp EEH
T ss_pred cCH
Confidence 864
No 31
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.4e-39 Score=365.28 Aligned_cols=207 Identities=26% Similarity=0.358 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
.++|+|||++|++||+++|+||||||||||+++|+|.++| .+|+|.++|+++...
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---------------------SSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCCSHHHH
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---------------------CCeEEEECCEECCcccccH
Confidence 3599999999999999999999999999999999999865 589999999987421
Q ss_pred -CccceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 260 -VPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 260 -~~~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
..++.+|||+|++ ..+..+||+||+.|+....+... . + ...+++
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~ 125 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE----------D----------E--------------IRKRVD 125 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCH----------H----------H--------------HHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHH
Confidence 1246799999986 34447899999999755432110 0 0 112356
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..|.|+|++
T Consensus 126 ~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v 200 (275)
T 3gfo_A 126 NALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA 200 (275)
T ss_dssp HHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHcCCchhhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 789999999999988876 999999999999999999999999999999999999999999999973348888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.|... ++.+++|+|++|++|++++.|+++++..
T Consensus 201 tHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 201 THDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp ESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred ecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 76554 7888999999999999999999998753
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.3e-39 Score=381.08 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=176.1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh------hhhcceeeEeecCCCCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ------ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~~l 973 (1403)
+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..++|++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 99999999999999999999999999999999998764 48999999987532 23467799999999999999
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
||+||+.|+...+ ..+.++.+++++++++.++|.+..++.++ +|||||||||+|||||+.+|++||||||||
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq~QRvalAraL~~~P~lLLLDEP~s 169 (353)
T 1oxx_K 98 TAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFS 169 (353)
T ss_dssp CHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 9999999976443 23345556779999999999998887654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
|||+.++..+++.|+++.++ |+|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 170 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999754 999999999986 67889999999985 8999988753
No 33
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.5e-39 Score=358.34 Aligned_cols=207 Identities=21% Similarity=0.255 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|||+++++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---------------------TEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHHH
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CceEEEECCEEcccCCHHH
Confidence 5699999999999999999999999999999999999865 58999999998876543
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.+|||+|++.+++.+||+||+.++......+. ..+. + ....+
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~-------~~~~----------~--------------~~~~~ 125 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA-------MSGE----------E--------------RRKRA 125 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSC-------CCHH----------H--------------HHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccC-------CCHH----------H--------------HHHHH
Confidence 2359999999999999999999998654321000 0000 0 01234
Q ss_pred HHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 337 DYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 337 ~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
..+++.+||.+. .+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi 200 (235)
T 3tif_A 126 LECLKMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200 (235)
T ss_dssp HHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHCCCChhhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 567899999875 4777765 9999999999999999999999999999999999999999999999776688999
Q ss_pred EEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 416 VALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 416 i~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
++.|.+. ..+++|+|++|++|+++..|+.+++
T Consensus 201 ~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 201 VVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred EEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 8887664 4589999999999999999988765
No 34
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.8e-39 Score=380.54 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=177.2
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 5677776543 345799999999999999999999999999999999998764 4899999998764
Q ss_pred hh-hhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 953 QE-TFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 953 ~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2334555677999999999999888764 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999755 999999999986 67789999999985 899998875
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.5e-39 Score=374.48 Aligned_cols=206 Identities=26% Similarity=0.414 Sum_probs=178.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---------------------TKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTCCGGG
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CccEEEECCEECCcCChhh
Confidence 4699999999999999999999999999999999999865 58999999998865433 5
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|+..++|.+||+||+.|+.+.++.. +.+ ...+++.+++.
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~----------~~~------------------------~~~~v~~~l~~ 132 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVP----------KDE------------------------MDARVRELLRF 132 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC----------HHH------------------------HHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 78999999999999999999999975433211 000 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..|..+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.| ..
T Consensus 133 ~gL~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~ 206 (355)
T 1z47_A 133 MRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH-DQ 206 (355)
T ss_dssp TTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS-CH
T ss_pred cCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CH
Confidence 9999999988876 99999999999999999999999999999999999999999999997766888887765 45
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 207 ~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 207 EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5888999999999999999999999874
No 36
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=7.5e-38 Score=401.73 Aligned_cols=195 Identities=26% Similarity=0.355 Sum_probs=145.7
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc-C----CC-----CCce---eEE------EEEEcCccCChh------
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGGY---IEG------DIKISGYPKKQE------ 954 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g----~~-----~~~~---~~G------~i~i~g~~~~~~------ 954 (1403)
+|+|||++|++|+++||+|+||||||||+++|. | .. ..|. +.| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999963 2 11 1221 123 366676654210
Q ss_pred ----------------hhcceeeEeecCCCCC----------------------C-------------------------
Q 037155 955 ----------------TFARVSGYCEQTDIHS----------------------P------------------------- 971 (1403)
Q Consensus 955 ----------------~~~~~~gyv~Q~~~~~----------------------~------------------------- 971 (1403)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0123457777743211 1
Q ss_pred -------CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 037155 972 -------HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1043 (1403)
Q Consensus 972 -------~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P 1043 (1403)
.+||.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3567777765321 111 123568899999976 44544 3479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 037155 1044 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYAGPL 1110 (1403)
Q Consensus 1044 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~-----~gG~~~~~g~~ 1110 (1403)
+||||||||+|||+.+...+++.|+++++.|.|||+++|+++ ..+.||++++|. ++|++++.|+.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 347899999994 47899999874
No 37
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-38 Score=360.81 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=174.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP---------------------SHGECHLLGQNLNSWQPKA 82 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC---------------------SSCEEEETTEETTTSCHHH
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCcEEEECCEECCcCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++.+++.+||+||+.|+...... .+ ....++.++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------------------~~--------------~~~~~~~~l 126 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG----------------------SQ--------------DRQALQQVM 126 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS----------------------TT--------------HHHHHHHHH
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCc----------------------HH--------------HHHHHHHHH
Confidence 35699999999888889999999987542210 00 112356688
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+.+||.+..+..+++ |||||||||+|||||+. +|++|+|||||+|||+.++.++.+.|+++.+..+.|+
T Consensus 127 ~~~~l~~~~~~~~~~-----LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tv 201 (266)
T 4g1u_C 127 AQTDCLALAQRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201 (266)
T ss_dssp HHTTCSTTTTSBGGG-----CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEE
T ss_pred HHcCChhHhcCCccc-----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999988888865 99999999999999999 9999999999999999999999999999987655677
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++.| ...++..+||+|++|++|++++.|+++++.
T Consensus 202 i~vtH-dl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 202 CCVLH-DLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEEc-CHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 77654 555788899999999999999999998874
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.2e-39 Score=375.37 Aligned_cols=199 Identities=22% Similarity=0.298 Sum_probs=174.5
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+++ +|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..++|++|
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 88 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSC
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCC
Confidence 345 99999999999999999999999999999999998764 48999999987643 234567999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
|+||+.|+...+... .. ++++++++.++|.+..++.++ +|||||||||+|||||+.+|++|+|||||||
T Consensus 89 v~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 89 VKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp HHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred HHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999999987654321 11 458899999999998887754 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|+++.+ .|+|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999975 4999999999986 67889999999985 789988875
No 39
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-38 Score=373.93 Aligned_cols=206 Identities=29% Similarity=0.382 Sum_probs=179.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---------------------TSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGGG
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---------------------CccEEEECCEECCCCChhh
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.+++++||+||+.|+.+.++.. +.+ ...+++.+++.
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~ 120 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRIS----------KDE------------------------VEKRVVEIARK 120 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH----------HHH------------------------TTHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 67999999999999999999999986543211 000 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 121 ~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~ 194 (359)
T 2yyz_A 121 LLIDNLLDRKPTQ-----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-Q 194 (359)
T ss_dssp TTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-H
T ss_pred cCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-H
Confidence 9999999988876 999999999999999999999999999999999999999999999977668888887654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 195 AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5788999999999999999999999874
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.1e-38 Score=367.94 Aligned_cols=208 Identities=27% Similarity=0.381 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|||+.|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++.....
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---------------------~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---------------------SSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---------------------SEEEEEETTEETTSBCHHH
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---------------------CCcEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999865 58999999999876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+ .||+|||.|+..... .++..+++...+. .+. +
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~l-----~~~-i 173 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRVTAG-------------------------NDEVEAAAQAAGI-----HDA-I 173 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTSTTCC-------------------------HHHHHHHHHHHTC-----HHH-H
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhcccCC-------------------------HHHHHHHHHHhCc-----HHH-H
Confidence 467999999998885 599999998642111 0111111111110 111 1
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .+++..+|.+|+ .+..|||||||||+|||||+.+|+||+|||||||||+.++..|.+.|+++.+ ++|+|++.|.
T Consensus 174 ~--~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~ 248 (306)
T 3nh6_A 174 M--AFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHR 248 (306)
T ss_dssp H--HSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCS
T ss_pred H--hccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcC
Confidence 1 266778899984 5677999999999999999999999999999999999999999999998864 6788887665
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.. .+ ..+|+|++|++|+|++.|+++++.+
T Consensus 249 l~-~~-~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 249 LS-TV-VNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HH-HH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 43 44 4599999999999999999999864
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.4e-38 Score=359.21 Aligned_cols=218 Identities=25% Similarity=0.282 Sum_probs=171.8
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 5666766543 335799999999999999999999999999999999997211245899999998764
Q ss_pred h---hhh-cceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC-CCcccccccCCCCCC-CC
Q 037155 953 Q---ETF-ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL-KPLRDALVGLPGVNG-LS 1026 (1403)
Q Consensus 953 ~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-LS 1026 (1403)
. ... ++.++|++|++.+++.+||+|++.+.............+..+.++++++.++| .+..++.++ . ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 3 112 34589999999999999999999886532111111223344568899999999 577777643 6 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEE
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGRVI 1105 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~gG~~~ 1105 (1403)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999986 35555 599999985 7999
Q ss_pred EecCC
Q 037155 1106 YAGPL 1110 (1403)
Q Consensus 1106 ~~g~~ 1110 (1403)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 88875
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-38 Score=364.80 Aligned_cols=220 Identities=22% Similarity=0.374 Sum_probs=178.5
Q ss_pred CcEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 870 PLSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 870 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
...+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 19 ~~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~ 83 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGK 83 (279)
T ss_dssp CEEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTB
T ss_pred CceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 3357788877654 335699999999999999999999999999999999998764 4799999998
Q ss_pred cCC-----hhhhcceeeEeecCCCCC--CCCCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 037155 950 PKK-----QETFARVSGYCEQTDIHS--PHVTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPG 1021 (1403)
Q Consensus 950 ~~~-----~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1021 (1403)
+.. ....++.+||++|++.+. +.+||+||+.++...... .....++..+.++++++.++|.+..++.++
T Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 160 (279)
T 2ihy_A 84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--- 160 (279)
T ss_dssp CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh---
Confidence 764 233456799999987543 457999999885321100 011122334568899999999888877654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCeEEEEe
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
.|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.||++++|+
T Consensus 161 --~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 161 --YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK 237 (279)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE
Confidence 799999999999999999999999999999999999999999999997669999 99999986 4667899999998
Q ss_pred cCcEEEEecCCC
Q 037155 1100 RGGRVIYAGPLG 1111 (1403)
Q Consensus 1100 ~gG~~~~~g~~~ 1111 (1403)
+ |++++.|+..
T Consensus 238 ~-G~i~~~g~~~ 248 (279)
T 2ihy_A 238 D-GQSIQQGAVE 248 (279)
T ss_dssp T-TEEEEEEEHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999888753
No 43
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-38 Score=373.90 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ +
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---------------------TSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGGG
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---------------------CceEEEECCEECCcCCHhH
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|++.++|++||+||+.|+.+.++.. +. + ...+++.+++.
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~----------~--------------~~~~v~~~l~~ 120 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAP----------RE----------E--------------IDKKVREVAKM 120 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC----------HH----------H--------------HHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHH
Confidence 67999999999999999999999975433211 00 0 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 121 ~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~ 194 (362)
T 2it1_A 121 LHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-Q 194 (362)
T ss_dssp TTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-H
T ss_pred cCCchHhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-H
Confidence 9999998888865 999999999999999999999999999999999999999999999977668888887654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 195 ~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 195 AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5888999999999999999999998874
No 44
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.3e-38 Score=357.39 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC--CCC-
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN--EFV- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~--~~~- 260 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++. ...
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---------------------DEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEESSSTTCCH
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---------------------CCcEEEECCEECCCccccH
Confidence 4699999999999999999999999999999999999865 5899999998874 111
Q ss_pred --ccceEEEeccCCCCCCCCCHHHHHHhhc-ccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 --PQRTCAYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~~~~lTVrE~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++||+|++.+++.+||+||+.|+. +..+.. +. + ....++
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~ 141 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----------RE----------K--------------AEAKAM 141 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCC----------HH----------H--------------HHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHH
Confidence 1356999999999999999999999853 222110 00 0 012346
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+++.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+. +.|+|++
T Consensus 142 ~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~v 215 (263)
T 2olj_A 142 ELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVV 215 (263)
T ss_dssp HHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 688999999988888866 9999999999999999999999999999999999999999999999765 7888887
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.|. ..++.+++|+|++|++|++++.|+++++.
T Consensus 216 tHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 216 THE-MGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp CSC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCC-HHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 654 45777899999999999999999998874
No 45
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.5e-38 Score=351.18 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP---------------------TEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC---------------------SEEEEEETTEECCSSCHHH
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998765432
Q ss_pred -----cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 -----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 -----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.|+....+.. +. + ....+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~ 121 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKP----------KK----------E--------------AKERG 121 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------HH----------H--------------HHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCC----------HH----------H--------------HHHHH
Confidence 256999999999999999999999864332110 00 0 01234
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|+
T Consensus 122 ~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~ 195 (224)
T 2pcj_A 122 EYLLSELGLGDKLSRKPYE-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVM 195 (224)
T ss_dssp HHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 6688999999988888876 9999999999999999999999999999999999999999999999765 889888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecCh
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPR 446 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~ 446 (1403)
+.|+.. ++ +++|+|++|++|++++.|++
T Consensus 196 vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 196 VTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp ECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred EcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 877643 44 89999999999999999864
No 46
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-38 Score=355.00 Aligned_cols=196 Identities=24% Similarity=0.383 Sum_probs=169.4
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+|+|||+++++ |++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 59999999999 99999999999999999999998764 48999999987643 2235679999999999999999999
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+.+....+ . ....++.++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99864322 1 11224568899999999988887654 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1059 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999976 57788999999985 799988874
No 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-38 Score=359.27 Aligned_cols=200 Identities=25% Similarity=0.384 Sum_probs=170.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCC-CCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD-IHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lTv~ 976 (1403)
+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+......++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 5699999999999999999999999999999999998663 4899999998875434567799999985 466789999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC--CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK--PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1054 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsg 1054 (1403)
||+.+......+ .++.++.++++++.+||. +..++.+ ..|||||||||+|||||+.+|+||+|||||+|
T Consensus 98 enl~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYP----DRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCT----TSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 999986432211 111234578999999998 7777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999987 46678999999985 789888864
No 48
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.6e-38 Score=373.45 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-Q 262 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 262 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++| .+|+|.++|+++....+ +
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---------------------TEGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCGGG
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---------------------CceEEEECCEECCCCChhh
Confidence 4699999999999999999999999999999999999865 58999999998866543 4
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.+|||+|+..+++++||+||+.|+.+.++.. +.+ ...+++.+++.
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~ 128 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFP----------KDE------------------------IDKRVRWAAEL 128 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCC----------HHH------------------------HHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHH
Confidence 77999999999999999999999976543211 000 11245678999
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+|++.|. .
T Consensus 129 ~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~ 202 (372)
T 1v43_A 129 LQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-Q 202 (372)
T ss_dssp TTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-H
T ss_pred cCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-H
Confidence 9999999888865 999999999999999999999999999999999999999999999977668888887654 4
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++..++|+|++|++|+++..|+++++.
T Consensus 203 ~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 203 VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5888999999999999999999999874
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-38 Score=371.71 Aligned_cols=201 Identities=25% Similarity=0.362 Sum_probs=176.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-cce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-QRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-~~~ 264 (1403)
+|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....+ ++.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---------------------DSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---------------------CCcEEEECCEECCCCchhhCc
Confidence 99999999999999999999999999999999999865 58999999998865433 467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
+|||+|++.+++.+||+||+.|+.+.++.. . + .+++.+++.+|
T Consensus 74 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~--------------------~-~----------------~~v~~~l~~~~ 116 (348)
T 3d31_A 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIK--------------------D-P----------------KRVLDTARDLK 116 (348)
T ss_dssp CEEECTTCCCCTTSCHHHHHHHHHHHHCCC--------------------C-H----------------HHHHHHHHHTT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCC--------------------H-H----------------HHHHHHHHHcC
Confidence 999999999999999999999974432110 0 0 13466889999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|. ..+
T Consensus 117 L~~~~~~~~~~-----LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~ 190 (348)
T 3d31_A 117 IEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTE 190 (348)
T ss_dssp CTTTTTSCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHH
T ss_pred CchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHH
Confidence 99999988876 999999999999999999999999999999999999999999999977668888887654 458
Q ss_pred HHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 425 TYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+..++|+|++|++|+++..|+++++.
T Consensus 191 ~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 191 ARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 88999999999999999999999874
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-38 Score=373.46 Aligned_cols=206 Identities=29% Similarity=0.388 Sum_probs=177.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----- 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----- 258 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++| .+|+|.++|+++..
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---------------------SRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEEEEEGGGTE
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---------------------CccEEEECCEECccccccc
Confidence 4699999999999999999999999999999999999865 58999999987654
Q ss_pred -CCc-cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 259 -FVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 259 -~~~-~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..+ ++.+|||+|+..++|++||+||+.|+.+.++.. +.+ ...++
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~------------------------~~~~v 120 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVP----------RQE------------------------IDQRV 120 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCC----------HHH------------------------HHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----------HHH------------------------HHHHH
Confidence 322 477999999999999999999999975443211 000 11245
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..+..+++ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+|+
T Consensus 121 ~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 121 REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHCCCchHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999988876 99999999999999999999999999999999999999999999997766888888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.|. ..++..++|+|++|++|+++..|+++++.
T Consensus 196 vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 196 VTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EESC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ECCC-HHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 7654 45888999999999999999999998874
No 51
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-38 Score=359.35 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----- 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----- 258 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++..
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---------------------SEGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCEEECTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEcccccccc
Confidence 4699999999999999999999999999999999999865 58999999988751
Q ss_pred -----CC------ccceEEEeccCCCCCCCCCHHHHHHhhc-ccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHH
Q 037155 259 -----FV------PQRTCAYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVA 326 (1403)
Q Consensus 259 -----~~------~~~~~~yv~Q~d~~~~~lTVrE~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~ 326 (1403)
.. .++.++||+|++.+++.+||+||+.|+. +..+.. +. +
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~----------~--------- 128 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KH----------D--------- 128 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HH----------H---------
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HH----------H---------
Confidence 11 2357999999999999999999999853 221110 00 0
Q ss_pred hhccchhHHHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 327 VAGQETSLVTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 327 ~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
....++.+++.+||++. .+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 129 -----~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 129 -----ARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp -----HHHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 01235668899999988 8888876 999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 406 MVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 406 l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+.+. |.|+|++.|. ..++..++|+|++|++|++++.|+++++.
T Consensus 199 l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 199 LAEE-GKTMVVVTHE-MGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHT-TCCEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhC-CCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9764 7888887655 45777899999999999999999998874
No 52
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.5e-38 Score=372.30 Aligned_cols=204 Identities=22% Similarity=0.320 Sum_probs=176.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC-----CC
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE-----FV 260 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~-----~~ 260 (1403)
+|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.. ..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---------------------~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---------------------STGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---------------------SEEEEEETTEEEEETTEESSC
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CceEEEECCEECcccccccCC
Confidence 99999999999999999999999999999999999865 58999999987644 22
Q ss_pred -ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 261 -PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 261 -~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.++.+|||+|++.+++.+||+||+.|+.+.++... .+ ...+++.+
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~ 124 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK----------EE------------------------IRKRVEEV 124 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCH----------HH------------------------HHHHHHHH
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHH
Confidence 35789999999999999999999999765432110 00 11235678
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
++.+||++..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|
T Consensus 125 l~~~~L~~~~~~~~~~-----LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 199 (353)
T 1oxx_K 125 AKILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp HHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred HHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9999999999988876 99999999999999999999999999999999999999999999997766888888765
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
. ..++..++|+|++|++|+++..|+++++.
T Consensus 200 d-~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 200 D-PADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp C-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred C-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 45888999999999999999999998874
No 53
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-37 Score=354.78 Aligned_cols=220 Identities=25% Similarity=0.300 Sum_probs=177.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 37788877654 23579999999999999999999999999999999999732224589999999875
Q ss_pred Ch---hhh-cceeeEeecCCCCCCCCCHHHHHHHHHh-hh---CCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 037155 952 KQ---ETF-ARVSGYCEQTDIHSPHVTLYESLLYSAW-LR---LSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGV 1022 (1403)
Q Consensus 952 ~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1022 (1403)
.. ... ++.+||++|++.+++.+||.|++.+... .+ .......++..+.++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 2348999999999999999999987542 21 111223334456788999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRG 1101 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~i~ll~~g 1101 (1403)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 149999999999999999999999999999999999999999999999767999999999986 34444 899999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 241 G~i~~~g~~ 249 (267)
T 2zu0_C 241 GRIVKSGDF 249 (267)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEcCH
Confidence 799998886
No 54
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.4e-38 Score=356.53 Aligned_cols=213 Identities=24% Similarity=0.351 Sum_probs=173.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+++++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---------------------DEGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHHH
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998765432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhccc--ccccchhhHHHHhhHHHHhcCC-CCCchHHHHHHHHHhhccchhHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRC--LGVGTRYELLAELSRREKQQGI-KPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~--~~~~~~~~~~~~~~~~e~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.|+... .+. +. .+-+ ... .+..+ ....+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~---~~---~~~~----~~~~~~~~~--------------~~~~~ 134 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP---LN---SLFY----KKWIPKEEE--------------MVEKA 134 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH---HH---HHHH----CSSCCCCHH--------------HHHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCc---cc---cccc----ccccCCHHH--------------HHHHH
Confidence 35699999999999999999999986432 110 00 0000 000 00000 01235
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.+++.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|+
T Consensus 135 ~~~l~~~~l~~~~~~~~~~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~ 208 (257)
T 1g6h_A 135 FKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLI 208 (257)
T ss_dssp HHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHcCCchhhCCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 6688999999988888876 9999999999999999999999999999999999999999999999764 788888
Q ss_pred EEecCchhHHhhcCEEEEEcCCeEEEecChhh
Q 037155 417 ALLQPAPETYDLFDDIILISEGQIVYHGPRDN 448 (1403)
Q Consensus 417 ~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~ 448 (1403)
+.|+. .++.+++|+|++|++|++++.|++++
T Consensus 209 vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 209 IEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred EecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 77665 47788999999999999999999888
No 55
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-38 Score=353.39 Aligned_cols=206 Identities=25% Similarity=0.320 Sum_probs=174.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--c
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--P 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~ 261 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.... .
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---------------------SSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEETTTCHHHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEECCEECCccHHHH
Confidence 4699999999999999999999999999999999999865 5899999998875421 2
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++||+|++.+++.+||+||+.|..+..+.. +. + ....++.+++
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~ 132 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS----------SS----------E--------------IEEMVERATE 132 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC----------HH----------H--------------HHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC----------hH----------H--------------HHHHHHHHHH
Confidence 467999999999999999999999864322110 00 0 0113466789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.+||++..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|.+
T Consensus 133 ~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~ 206 (256)
T 1vpl_A 133 IAGLGEKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM 206 (256)
T ss_dssp HHCCGGGGGSBGGG-----CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH
T ss_pred HCCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH
Confidence 99999988888866 999999999999999999999999999999999999999999999875 478888877654
Q ss_pred chhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 422 APETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.++..++|+|++|++|++++.|+++++.+
T Consensus 207 -~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 207 -LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp -HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred -HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 46778899999999999999999988754
No 56
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.8e-38 Score=350.06 Aligned_cols=204 Identities=23% Similarity=0.357 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---------------------QKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECTTCCHHH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCceEEECCEECCCCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998865432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.|+.... . ...+. ....+.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~--------------------~~~~~--------------~~~~~~~ 122 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR-K--------------------DKEGI--------------KRDLEWI 122 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-C--------------------CSSHH--------------HHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-C--------------------CHHHH--------------HHHHHHH
Confidence 245999999999999999999999863110 0 00000 1124557
Q ss_pred HHHcC-CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLG-LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lg-L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.++ |++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.
T Consensus 123 l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vt 196 (240)
T 1ji0_A 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVE 196 (240)
T ss_dssp HHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred HHHcccHhhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 88884 88877777765 999999999999999999999999999999999999999999999876 578888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
|++ .++.+++|+|++|++|++++.|+++++.
T Consensus 197 Hd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 197 QNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp SCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 654 4778899999999999999999988764
No 57
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.3e-37 Score=349.30 Aligned_cols=194 Identities=24% Similarity=0.341 Sum_probs=164.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|. .++.+||++|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 35699999999999999999999999999999999998663 479987 235699999999988999999
Q ss_pred HHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 977 ESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 977 e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
||+.+....... .........+.++++++.++|.+..++.++ .|||||||||+|||||+.+|+||||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999987532211 001122334568899999999988877644 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |+ ++.|+.
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999876 999999999986 46788999999985 67 787764
No 58
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-37 Score=349.87 Aligned_cols=194 Identities=22% Similarity=0.361 Sum_probs=168.7
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
.+|+|||+++++||+++|+||||||||||+++|+|..++ . |+|.++|.+... ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 389999999999999999999999999999999998763 5 999999987532 3345679999999998899999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------EEEE
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS-------IIFM 1048 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~-------illL 1048 (1403)
+||+.+.... ... ++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 9999875211 111 345789999999998887764 4799999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999877999999999986 46688999999985 789888875
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-38 Score=349.81 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=172.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~ 264 (1403)
+|+|+|+.+++ |+++|+|||||||||||++|+|.++| .+|+|.++|+++.... .++.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---------------------DRGEVRLNGADITPLPPERRG 71 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC---------------------SEEEEEETTEECTTSCTTTSC
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC---------------------CceEEEECCEECCcCchhhCc
Confidence 49999999999 99999999999999999999999865 5899999998875432 2467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++||+|++.+++.+||+||+.|+.+..+. ... ...++.+++.+|
T Consensus 72 i~~v~q~~~l~~~ltv~enl~~~~~~~~~----------~~~--------------------------~~~~~~~l~~~~ 115 (240)
T 2onk_A 72 IGFVPQDYALFPHLSVYRNIAYGLRNVER----------VER--------------------------DRRVREMAEKLG 115 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTTCTTSCH----------HHH--------------------------HHHHHHHHHTTT
T ss_pred EEEEcCCCccCCCCcHHHHHHHHHHHcCC----------chH--------------------------HHHHHHHHHHcC
Confidence 99999999999999999999987443210 000 113456789999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+ ..+
T Consensus 116 l~~~~~~~~~~-----LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~ 189 (240)
T 2onk_A 116 IAHLLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIE 189 (240)
T ss_dssp CTTTTTCCGGG-----SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHH
T ss_pred CHHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHH
Confidence 99888888876 999999999999999999999999999999999999999999999876557888887665 447
Q ss_pred HHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 425 TYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+..++|+|++|++|++++.|+++++.
T Consensus 190 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 190 AAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 78899999999999999999998874
No 60
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-37 Score=358.58 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=173.0
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..+.++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 3578899887652 235699999999999999999999999999999999998764 48999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1020 (1403)
+.. ..+++.+|||+|++.+++ .||+||+.|+... ... +.++++++.+++.+.. ++.++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 643 346678999999998875 5999999986421 111 2356666766665432 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
...|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|||+++|+++. + ..||++++|++
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~ 263 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKD 263 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEET
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999864 7999999999863 4 45999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 264 -G~iv~~G~~ 272 (306)
T 3nh6_A 264 -GCIVERGRH 272 (306)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999984
No 61
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-37 Score=347.49 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=171.8
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 467777776531 0235699999999999999999999999999999999998663 489999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCccccc-------ccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDAL-------VGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~ 1021 (1403)
.. ..+++.+||++|++.+++ .||+||+.+... ... .+.++++++.+++.+..+.. ++. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 334567999999998876 699999987521 111 12367788888887655443 222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999995 59999999999863 4 46999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 789988874
No 62
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-37 Score=354.82 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=170.4
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+.. .+++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 17 l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 17 VKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG
T ss_pred EEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 678888765420 0125699999999999999999999999999999999998763 4899999998764
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcH---HHHHHHHHHHHHHc--CCCCcccccccCCCCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDT---KKRKIFVDEVMELV--ELKPLRDALVGLPGVNG 1024 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~---~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~ 1024 (1403)
. ..+++.+|||+|++.+++ .||+||+.+..... ..... ......++++++.+ |+....+..+ ..
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~ 156 (271)
T 2ixe_A 85 QYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----NQ 156 (271)
T ss_dssp GBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----TT
T ss_pred cCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----CC
Confidence 2 234567999999998877 59999998863211 11000 11122346677777 6766666553 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1103 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~ 1103 (1403)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.||++++|++ |+
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~ 233 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GS 233 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999864 4899999999975 3346999999985 78
Q ss_pred EEEecCC
Q 037155 1104 VIYAGPL 1110 (1403)
Q Consensus 1104 ~~~~g~~ 1110 (1403)
+++.|+.
T Consensus 234 i~~~g~~ 240 (271)
T 2ixe_A 234 VCEQGTH 240 (271)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9988874
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-38 Score=344.31 Aligned_cols=197 Identities=19% Similarity=0.281 Sum_probs=166.3
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
-++++|+++.+ ++ .+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 35677776543 34 699999999999999999999999999999999998663 489999999876
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 952 KQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
. ..++.+||++|++.+++.+||+||+.+....+.. ... .+.++++++.++|.+. +..+ ..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 5 3567799999999999999999999987654321 111 2447889999999877 6553 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1032 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1032 Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999999766899999999987 466677777765
No 64
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-37 Score=348.86 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++.....++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---------------------TSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEECCHHHHGG
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CCcEEEECCEECchHHhhh
Confidence 4699999999999999999999999999999999999865 5899999998775322356
Q ss_pred eEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++||+|++ ..++.+||+||+.|+.... .. ..+ ....++.+++.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~ 123 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YP--------------------DRD--------------PVPLVKKAMEF 123 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CT--------------------TSC--------------SHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CC--------------------HHH--------------HHHHHHHHHHH
Confidence 799999995 5667899999999864321 00 000 01234667899
Q ss_pred cCCc--ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 343 LGLD--ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 343 lgL~--~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+||+ +..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.|+|++.|.
T Consensus 124 ~gl~~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd 197 (266)
T 2yz2_A 124 VGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHD 197 (266)
T ss_dssp TTCCHHHHTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred cCcCCcccccCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 9998 888888865 9999999999999999999999999999999999999999999998765 7888887766
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ++..++|+|++|++|++++.|+++++.+
T Consensus 198 ~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 198 IE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 54 6778899999999999999999988754
No 65
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-36 Score=339.32 Aligned_cols=200 Identities=25% Similarity=0.412 Sum_probs=161.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~i~g~~~~~~~~~~ 80 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---------------------ENGQVLIDGHDLALADPNW 80 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEETTTSCHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998865432
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+||+.|+... . . .+ .++.++
T Consensus 81 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~--------------------~---~~---------------~~~~~l 119 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLN-RSIIDNISLANPG--M--------------------S---VE---------------KVIYAA 119 (247)
T ss_dssp HHHHEEEECSSCCCTT-SBHHHHHTTTCTT--C--------------------C---HH---------------HHHHHH
T ss_pred HHhcEEEEeCCCcccc-ccHHHHHhccCCC--C--------------------C---HH---------------HHHHHH
Confidence 457999999998886 5999999885210 0 0 00 011223
Q ss_pred HHcCCcc-------cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 341 KLLGLDI-------CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 341 ~~lgL~~-------~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
+.+||.+ ..++.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|
T Consensus 120 ~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~t 196 (247)
T 2ff7_A 120 KLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRT 196 (247)
T ss_dssp HHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSE
T ss_pred HHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCE
Confidence 3344433 2344444 2345699999999999999999999999999999999999999999999984 3789
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+|++.|.+. .+ ..+|+|++|++|++++.|+++++.
T Consensus 197 viivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 197 VIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 988877654 34 569999999999999999998874
No 66
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.7e-36 Score=345.66 Aligned_cols=209 Identities=22% Similarity=0.371 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++||+++|+|||||||||||++|+|.++| .+|+|.++|.++.....
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---------------------TGGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEGGGBCHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCEEEECCEEcccCCHHH
Confidence 4699999999999999999999999999999999999865 58999999988754332
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+|||.|+..... . .+ +.. ++.. ....+.++
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~--~-~~------------------~~~---~~~~------~~~~~~~l 139 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP--T-ME------------------EIT---AVAM------ESGAHDFI 139 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC--C-HH------------------HHH---HHHH------HHTCHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccCC--h-HH------------------HHH---HHHH------HHhHHHHH
Confidence 357999999998887 599999998642110 0 00 000 0000 01124456
Q ss_pred HHc--CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 341 KLL--GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 341 ~~l--gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+.+ ||+...+..++ .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|++.
T Consensus 140 ~~l~~gl~~~~~~~~~-----~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 140 SGFPQGYDTEVGETGN-----QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp HHSTTGGGSBCCGGGT-----TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred HhhhcchhhhhcCCcC-----CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 777 67666666554 49999999999999999999999999999999999999999999988654578888877
Q ss_pred ecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|.+. ++ ..+|+|++|++|++++.|+++++.+
T Consensus 215 Hd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 215 QQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp SCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 6643 44 4599999999999999999988753
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-37 Score=344.78 Aligned_cols=198 Identities=27% Similarity=0.418 Sum_probs=164.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.+||++|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 35699999999999999999999999999999999998653 47999999987643 234567999999998877 5
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccc-------cCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALV-------GLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-------g~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
||+||+.+... .... ++.++++++.+++.+..+... +. .+..|||||||||+|||||+.+|++|
T Consensus 91 tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 91 TIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp EHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 1112 123678899999987765432 22 24579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|++ |++++.|+.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999997 5999999999975 34 56999999985 788888764
No 68
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-36 Score=347.07 Aligned_cols=208 Identities=26% Similarity=0.341 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC--CCC-
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN--EFV- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~--~~~- 260 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++. ...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---------------------TSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTBCCC---CCH
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------CCeEEEECCEEcccccCCH
Confidence 4699999999999999999999999999999999999865 5899999998875 322
Q ss_pred --ccceEEEeccCCCC--CCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 --PQRTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~~--~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.++.++||+|++.+ .+.+||+||+.|+..... + .+ + .+..+ ....+
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~-~-~~-------------~-~~~~~--------------~~~~~ 142 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-G-VY-------------Q-DIDDE--------------IRNEA 142 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-------------------------CCHH--------------HHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc-c-cc-------------c-CCcHH--------------HHHHH
Confidence 24679999998753 345699999998632100 0 00 0 00000 01234
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM-- 414 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv-- 414 (1403)
+.+++.+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. ++|+
T Consensus 143 ~~~l~~~gl~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~ 216 (279)
T 2ihy_A 143 HQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAM 216 (279)
T ss_dssp HHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred HHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 6678999999988888876 9999999999999999999999999999999999999999999999765 7888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
|++.|.. .++.+++|+|++|++|++++.|+++++
T Consensus 217 iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 217 IYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 7776654 477789999999999999999998876
No 69
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-36 Score=340.11 Aligned_cols=197 Identities=24% Similarity=0.351 Sum_probs=168.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
++|+|+|+.+++||+++|+|||||||||||++|+|.++| . |+|.++|+++.....
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---------------------~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---------------------K-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------E-EEEEETTEEGGGSCHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---------------------C-eEEEECCEECCcCCHHHH
Confidence 489999999999999999999999999999999999853 6 999999988754332
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||+||+.|+... .. . ...++.+++
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-~~---------------------~-----------------~~~~~~~l~ 112 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHD-KT---------------------R-----------------TELLNDVAG 112 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTCSS-TT---------------------C-----------------HHHHHHHHH
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhhcc-CC---------------------c-----------------HHHHHHHHH
Confidence 35799999999999999999999885210 00 0 012456789
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK-------VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~-------illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.+||++..+..+++ |||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++.+. ++|+
T Consensus 113 ~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv 186 (249)
T 2qi9_C 113 ALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAI 186 (249)
T ss_dssp HTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEE
T ss_pred HcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEE
Confidence 99999988887765 99999999999999999999 99999999999999999999999998764 7888
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
|++.|+ ..++..++|++++|++|++++.|+++++
T Consensus 187 iivtHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 187 VMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEECSC-HHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEeCC-HHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 887655 4467789999999999999999998876
No 70
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.5e-36 Score=379.43 Aligned_cols=208 Identities=25% Similarity=0.425 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.+...
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 412 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---------------------TSGQILIDGHNIKDFLTGS 412 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---------------------SEEEEEETTEEGGGSCHHH
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++. ||+||+.|+... .+.++..+++...+. .+.
T Consensus 413 ~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~-----~~~-- 459 (578)
T 4a82_A 413 LRNQIGLVQQDNILFSD-TVKENILLGRPT-------------------------ATDEEVVEAAKMANA-----HDF-- 459 (578)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC-----HHH--
T ss_pred HhhheEEEeCCCccCcc-cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc-----HHH--
Confidence 4679999999999876 999999886211 011122222222211 111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
.-.+++..||.+|+ .+..|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+|++.|+
T Consensus 460 -~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~ 535 (578)
T 4a82_A 460 -IMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR 535 (578)
T ss_dssp -HHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSS
T ss_pred -HHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecC
Confidence 22478889999984 5677999999999999999999999999999999999999999999998753 6888887776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ....+|+|++|++|+++++|+++++.+
T Consensus 536 l~--~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 536 LS--TITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp GG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 55 346699999999999999999999864
No 71
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-36 Score=337.58 Aligned_cols=202 Identities=27% Similarity=0.358 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|+++....
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---------------------TAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---------------------SBSCEEETTEESTTTSCSC
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 5899999998875432
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++ .||+||+.|+... .. + ...++.++
T Consensus 74 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~-~~-----------------------~---------------~~~~~~~l 113 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMA-GTIRENLTYGLEG-DY-----------------------T---------------DEDLWQVL 113 (243)
T ss_dssp CTTTCCEECCSSCCCC-EEHHHHTTSCTTS-CS-----------------------C---------------HHHHHHHH
T ss_pred HHhhEEEEcCCCcccc-ccHHHHHhhhccC-CC-----------------------C---------------HHHHHHHH
Confidence 3467999999998887 5999999885210 00 0 00123455
Q ss_pred HHcCCccccc-------ccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 037155 341 KLLGLDICAD-------TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 341 ~~lgL~~~~d-------t~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t 413 (1403)
+.+|+.+..+ +.++ +....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|
T Consensus 114 ~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t 190 (243)
T 1mv5_A 114 DLAFARSFVENMPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT 190 (243)
T ss_dssp HHHTCTTTTTSSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE
T ss_pred HHhChHHHHHhCccchhchhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE
Confidence 6667665443 3333 2356799999999999999999999999999999999999999999999986 3789
Q ss_pred EEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 414 MIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+|++.|++. .+ ..+|+|++|++|++++.|+++++..
T Consensus 191 vi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 191 TLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 988877654 44 5699999999999999999988753
No 72
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-35 Score=334.90 Aligned_cols=197 Identities=19% Similarity=0.283 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++| .+|+|.+ ++
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~----------~~ 66 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---------------------IQGKIEV----------YQ 66 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---------------------SEEEEEE----------CS
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEE----------ec
Confidence 4699999999999999999999999999999999999865 5899982 35
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccc-cccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++||+|++.+++.+||+||+.|+.... +.. + .+..+ ....++.+++.
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~----------------~-~~~~~--------------~~~~~~~~l~~ 115 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF----------------A-KPKSH--------------DYQVAMQALDY 115 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT----------------C-CCCHH--------------HHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccc----------------c-CCCHH--------------HHHHHHHHHHH
Confidence 7999999999998999999999864211 100 0 00000 01134668899
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+||++..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+.
T Consensus 116 ~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~- 189 (253)
T 2nq2_C 116 LNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP- 189 (253)
T ss_dssp TTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-
T ss_pred cCChHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-
Confidence 9999988888765 9999999999999999999999999999999999999999999998765578888876654
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.++.+++|+|++|++|+ ++.|+++++
T Consensus 190 ~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 190 NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 46778999999999999 999998876
No 73
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-36 Score=340.98 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=162.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceee-EeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSG-YCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~~~~lTv~ 976 (1403)
+.+|+|||++++ ||+++|+||||||||||+++|+|.. + .+|+|.++|.+......++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 569999999999 9999999999999999999999987 4 3899999998754211245799 99999877 89999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
||+.+...+. ... ++.++++++.++|. +..++.++ .|||||||||+|||||+.+|++|+|||||+||
T Consensus 92 enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLY-----KLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999875443 111 23478899999998 87777643 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-eEEEEecCcEEEEecCC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~i~ll~~gG~~~~~g~~ 1110 (1403)
|+.++..+++.|+++++ |||++||+++ ++.+.|| ++++|++ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999999853 9999999986 4667899 9999985 789988874
No 74
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-36 Score=377.48 Aligned_cols=209 Identities=25% Similarity=0.370 Sum_probs=171.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+...
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---------------------~~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------------------ERGRVEVDELDVRTVKLK 413 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC---------------------SEEEEEESSSBGGGBCHH
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC---------------------CCcEEEECCEEcccCCHH
Confidence 34699999999999999999999999999999999999865 58999999998876543
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++. ||+||+.++.... +.++..+++...+. .+.
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~~-----~~~- 461 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGREDA-------------------------TDDEIVEAAKIAQI-----HDF- 461 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTTC-----HHH-
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccCCCC-------------------------CHHHHHHHHHHhCc-----HHH-
Confidence 4679999999999865 9999998863210 11111222221111 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
...|++..||.+|+ .+..||||||||++|||||+.+|++|+||||||+||+.++.+|.+.|+++. .++|+|++.|
T Consensus 462 --i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH 536 (587)
T 3qf4_A 462 --IISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQ 536 (587)
T ss_dssp --HHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEES
T ss_pred --HHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEec
Confidence 12477889999984 567799999999999999999999999999999999999999999999874 3789998887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+++ ....+|+|++|++|+++++|+++|+.+
T Consensus 537 ~l~--~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 537 KIP--TALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp CHH--HHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred ChH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 664 456899999999999999999999864
No 75
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.1e-36 Score=337.60 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc--ccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
+++|+|||+.+++||+++|+|||||||||||++|+|. ++| .+|+|.++|+++.....
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---------------------~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---------------------ERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---------------------EEEEEEETTEECTTSCH
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---------------------CceEEEECCEECCCCCH
Confidence 4699999999999999999999999999999999998 433 58999999998765432
Q ss_pred ----cceEEEeccCCCCCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 262 ----QRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 262 ----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
++.++||+|++.+++.+||+||+.++... .+. ....+ + ....+
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-------------------~~~~~--~-----------~~~~~ 122 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR-------------------EVGVA--E-----------FWTKV 122 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTS-------------------CCCHH--H-----------HHHHH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccc-------------------cCCHH--H-----------HHHHH
Confidence 23489999999999999999999885321 000 00000 0 01134
Q ss_pred HHHHHHcCC-cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 337 DYVLKLLGL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 337 ~~il~~lgL-~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
+.+++.+|| ++..++.+++ +|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|
T Consensus 123 ~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi 197 (250)
T 2d2e_A 123 KKALELLDWDESYLSRYLNE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGAL 197 (250)
T ss_dssp HHHHHHHTCCGGGGGSBTTC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEE
T ss_pred HHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEE
Confidence 667899999 5777777652 3999999999999999999999999999999999999999999999864 478888
Q ss_pred EEEecCchhHHhh-cCEEEEEcCCeEEEecChhh
Q 037155 416 VALLQPAPETYDL-FDDIILISEGQIVYHGPRDN 448 (1403)
Q Consensus 416 i~~~q~~~~~~~~-fD~IilL~~G~iv~~G~~~~ 448 (1403)
++.|++. ++..+ +|+|++|++|++++.|+++.
T Consensus 198 ~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 198 VITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred EEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 8877654 56666 59999999999999999873
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.5e-36 Score=338.45 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=168.0
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++. ...+.+|+|||++|++||++||+||||||||||+++|+|... + +|+|.++|.+..
T Consensus 18 l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhh
Confidence 677887765421 011459999999999999999999999999999999999865 2 699999998763
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPGV 1022 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~~ 1022 (1403)
. ..+++.+||++|++.+++ .||+||+.++.. .... +.+.++++.+++.+.. ++.++. .+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~ 153 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KG 153 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SS
T ss_pred hcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-Cc
Confidence 2 335667999999998876 599999987521 1111 2356677777765432 333332 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++ |
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~-G 229 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK-G 229 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999965 8999999999863 4 56999999985 7
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 230 ~i~~~g~~ 237 (260)
T 2ghi_A 230 KIVEKGTH 237 (260)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99988874
No 77
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.8e-35 Score=335.34 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=162.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|||+.+++|++++|+|||||||||||++|+|.++ .+|+|.++|+++....
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------------------~~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----------------------AEGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC----------------------CEEEEEETTEEGGGBCHHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC----------------------CCeEEEECCEEhhhcCHHH
Confidence 469999999999999999999999999999999999874 2699999998875433
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++ .||+||+.|+... . . .++..+++...+ +.
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~-~----------------------~~~~~~~l~~~~---------l~ 135 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKLD--A-T----------------------DEEVIKATKSAQ---------LY 135 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCTT--C-C----------------------HHHHHHHHHHTT---------CH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCCC--C-C----------------------HHHHHHHHHHhC---------CH
Confidence 2467999999998886 5999999885210 0 0 000001110000 01
Q ss_pred HH-cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 341 KL-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 341 ~~-lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
+. -++++..||.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|
T Consensus 136 ~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH 212 (260)
T 2ghi_A 136 DFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAH 212 (260)
T ss_dssp HHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECS
T ss_pred HHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcC
Confidence 11 1466667777763 4567999999999999999999999999999999999999999999999853 788888877
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++. .+ ..+|+|++|++|++++.|+++++..
T Consensus 213 ~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 213 RLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp SGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 654 33 5699999999999999999988753
No 78
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-35 Score=336.26 Aligned_cols=222 Identities=22% Similarity=0.268 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|||+.|++|++++|+|||||||||||++|+|.... ++.+|+|.++|.++.....
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-------------------~p~~G~I~~~g~~i~~~~~~~ 93 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-------------------EVTGGTVEFKGKDLLALSPED 93 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-------------------EEEEEEEEETTEEGGGSCHHH
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-------------------CCCCeEEEECCEECCcCCHHH
Confidence 4699999999999999999999999999999999998410 1258999999988755432
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++.+||+||+.+..... . . ..+.. ....++ ....++.+
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~------------~-~--~~~~~-~~~~~~-----------~~~~~~~~ 146 (267)
T 2zu0_C 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV------------R-S--YRGQE-TLDRFD-----------FQDLMEEK 146 (267)
T ss_dssp HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHH------------H-H--GGGCC-CCCHHH-----------HHHHHHHH
T ss_pred HhhCCEEEEccCccccccccHHHHHHHHHHhh------------h-h--hhccc-cCCHHH-----------HHHHHHHH
Confidence 234999999999999999999998742100 0 0 00000 000000 01235668
Q ss_pred HHHcCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 340 LKLLGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 340 l~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
++.+||+ +..+..++. .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.
T Consensus 147 l~~~gl~~~~~~~~~~~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivt 221 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVT 221 (267)
T ss_dssp HHHTTCCTTTTTSBTTT----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEEC
T ss_pred HHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 8999996 466766641 3999999999999999999999999999999999999999999998854 478888877
Q ss_pred ecCchhHHhh-cCEEEEEcCCeEEEecChhhHHHHHHHcCC
Q 037155 419 LQPAPETYDL-FDDIILISEGQIVYHGPRDNVLEFFEQMGF 458 (1403)
Q Consensus 419 ~q~~~~~~~~-fD~IilL~~G~iv~~G~~~~~~~~F~~~G~ 458 (1403)
|.+ .++..+ +|+|++|++|++++.|+++++.. .+..||
T Consensus 222 Hd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 222 HYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp SSG-GGGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred eCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 654 355555 89999999999999999988753 344444
No 79
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-36 Score=409.45 Aligned_cols=213 Identities=26% Similarity=0.375 Sum_probs=179.4
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC
Q 037155 181 KRDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV 260 (1403)
Q Consensus 181 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~ 260 (1403)
+++.++|+|||++|+|||.+||+||+|||||||+++|.|+++| .+|+|.+||+++.+..
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---------------------~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---------------------LGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC---------------------SSSEEEETTEETTTBC
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC---------------------CCCEEEECCEEhhhCC
Confidence 3456799999999999999999999999999999999999865 5899999999998876
Q ss_pred c---cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 P---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 ~---~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
. |+.++||+|++.+|.. ||||||.|+..- ++.+.++..+++..++.+ |
T Consensus 1148 ~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~-----~ 1198 (1321)
T 4f4c_A 1148 PEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIH-----N 1198 (1321)
T ss_dssp HHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCH-----H
T ss_pred HHHHHhheEEECCCCEeeCc-cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCCh-----H
Confidence 4 5789999999999976 999999886311 112233444555444321 2
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.+ -.|++++||.||+ .+.+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|++
T Consensus 1199 ~I---~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~I 1272 (1321)
T 4f4c_A 1199 FI---AELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVI 1272 (1321)
T ss_dssp HH---HTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEE
T ss_pred HH---HcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEe
Confidence 22 2589999999995 577799999999999999999999999999999999999999999998764 47899988
Q ss_pred EecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 418 LLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 418 ~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
.|.. ++...+|+|+||++|+|+++|+++++++
T Consensus 1273 AHRL--sTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1273 AHRL--NTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp CSSS--STTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred ccCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7755 4778899999999999999999999985
No 80
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.9e-36 Score=376.90 Aligned_cols=208 Identities=24% Similarity=0.363 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+...
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---------------------~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV---------------------DRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC---------------------SEEEEEETTEEGGGSCHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC---------------------CCeEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+||+.++.... .+.+ ..+++...+. +..+
T Consensus 427 ~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~----------------------~~~~---~~~~~~~~~~------~~~~ 474 (598)
T 3qf4_B 427 LRSSIGIVLQDTILFS-TTVKENLKYGNPGA----------------------TDEE---IKEAAKLTHS------DHFI 474 (598)
T ss_dssp HHHHEEEECTTCCCCS-SBHHHHHHSSSTTC----------------------CTTH---HHHHTTTTTC------HHHH
T ss_pred HHhceEEEeCCCcccc-ccHHHHHhcCCCCC----------------------CHHH---HHHHHHHhCC------HHHH
Confidence 467999999999886 59999999862110 0111 1111111110 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.+++..||.+|+ .+..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.|+
T Consensus 475 --~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~ 549 (598)
T 3qf4_B 475 --KHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHR 549 (598)
T ss_dssp --HTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCC
T ss_pred --HhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 2477888999984 567799999999999999999999999999999999999999999999885 37899998887
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++ ....+|+|++|++|+++++|+++++.+
T Consensus 550 l~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 550 LN--TIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp TT--HHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 65 345699999999999999999999864
No 81
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.2e-35 Score=368.55 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.+...
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---------------------DEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---------------------SEEEEEETTEETTTBCHHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC---------------------CCCeEEECCEEccccCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++. ||+||+.++.. .. .+.++..+++...+. +..+
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~l------~~~~ 463 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYART-EE-----------------------YSREQIEEAARMAYA------MDFI 463 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTTC------HHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcCC------HHHH
Confidence 4679999999998875 99999998631 00 001111122221111 1112
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .++++.||.+|+ .+..||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++.+ ++|+|++.|+
T Consensus 464 ~--~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 538 (582)
T 3b60_A 464 N--KMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR 538 (582)
T ss_dssp H--HSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSC
T ss_pred H--hccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecc
Confidence 2 256788999985 5678999999999999999999999999999999999999999999999863 7899888877
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ..+.+|+|++|++|++++.|+++++.+
T Consensus 539 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 539 LS--TIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp GG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HH--HHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 64 446799999999999999999998864
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=351.42 Aligned_cols=200 Identities=26% Similarity=0.285 Sum_probs=163.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|||++|++||+++|+|||||||||||++|+|+++ .+|+|.++|+++....+
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----------------------~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----------------------TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----------------------EEEEEEESSCBTTSSCHHH
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----------------------CCeEEEECCEECCcCChHH
Confidence 469999999999999999999999999999999999874 37999999999876654
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+|+ +||+||+.+..... ...++.++
T Consensus 92 ~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~-----------------------------------------~~~v~~~l 129 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFS-GTFRKNLDPNAAHS-----------------------------------------DQEIWKVA 129 (390)
T ss_dssp HHHTEEEESCCCCCCS-EEHHHHHCTTCCSC-----------------------------------------HHHHHHHH
T ss_pred HhCCEEEEcCCcccCc-cCHHHHhhhccccC-----------------------------------------HHHHHHHH
Confidence 478999999999997 69999997532100 00123456
Q ss_pred HHcCCcccccccccC------ccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 341 KLLGLDICADTMVGD------EMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~------~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
+.+||.+..+..... +.+..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+.|+
T Consensus 130 ~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tv 207 (390)
T 3gd7_A 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTV 207 (390)
T ss_dssp HHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCE
T ss_pred HHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEE
Confidence 667776554444321 2345599999999999999999999999999999999999999999998753 36787
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
|++.|+. +....+|+|++|++|+|+..|+++++.+
T Consensus 208 i~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 208 ILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7776664 5667799999999999999999998853
No 83
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.9e-35 Score=368.12 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
+++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.+||+++.+..
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---------------------~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV---------------------DSGSICLDGHDVRDYKLTN 414 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 5899999999876543
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++||+|++.+++. ||+||+.++.. .. .+.++..+++...+. +..+
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~l------~~~~ 463 (582)
T 3b5x_A 415 LRRHFALVSQNVHLFND-TIANNIAYAAE-GE-----------------------YTREQIEQAARQAHA------MEFI 463 (582)
T ss_pred HhcCeEEEcCCCccccc-cHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCCC------HHHH
Confidence 24679999999998875 99999998631 00 000111122211111 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+ .++++.||.+|+ .+..||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++|+|++.|+
T Consensus 464 ~--~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 538 (582)
T 3b5x_A 464 E--NMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHR 538 (582)
T ss_pred H--hCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecC
Confidence 2 256778999985 5677999999999999999999999999999999999999999999998753 7899988877
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+. ..+.+|+|++|++|++++.|+++++.+
T Consensus 539 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 539 LS--TIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 64 446799999999999999999998853
No 84
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-35 Score=331.85 Aligned_cols=194 Identities=20% Similarity=0.201 Sum_probs=163.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ | .+|+|.++|+++.....++
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p---------------------~~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P---------------------YSGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C---------------------CEEEEEETTEEGGGCSCCT
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C---------------------CCcEEEECCEECcchHHhh
Confidence 469999999999 9999999999999999999999998 6 4899999998764321256
Q ss_pred eEE-EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCA-YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~-yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++ ||+|++.+ .+||+||+.|..+... . ....++.+++.
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~---------------------~-----------------~~~~~~~~l~~ 114 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKG---------------------L-----------------DRDLFLEMLKA 114 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTC---------------------C-----------------CHHHHHHHHHH
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcc---------------------h-----------------HHHHHHHHHHH
Confidence 799 99999876 8899999988532110 0 01124567889
Q ss_pred cCCc-ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 343 LGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 343 lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+||+ +..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++. . |+|++.|++
T Consensus 115 ~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~ 185 (263)
T 2pjz_A 115 LKLGEEILRRKLYK-----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL 185 (263)
T ss_dssp TTCCGGGGGSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG
T ss_pred cCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH
Confidence 9998 888887765 99999999999999999999999999999999999999999998764 2 777776654
Q ss_pred chhHHhhcC-EEEEEcCCeEEEecChhhHH
Q 037155 422 APETYDLFD-DIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 422 ~~~~~~~fD-~IilL~~G~iv~~G~~~~~~ 450 (1403)
.++.+++| ++++|++|++++.|+++++.
T Consensus 186 -~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 186 -DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp -GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred -HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 46778999 99999999999999998875
No 85
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-35 Score=323.28 Aligned_cols=188 Identities=17% Similarity=0.277 Sum_probs=155.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccce
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRT 264 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~ 264 (1403)
++|+|+|+.+++||+++|+|||||||||||++|+|.++| .+|+|.++|.++. ..++.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g~~~~--~~~~~ 79 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---------------------LKGEIIYNGVPIT--KVKGK 79 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEETTEEGG--GGGGG
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCeEEEECCEEhh--hhcCc
Confidence 699999999999999999999999999999999999865 5899999998765 24677
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++||+|++.+++.+||+||+.|+.+..+. . .+ ...++.+++.+|
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~--------------------~-~~---------------~~~~~~~l~~~g 123 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGV--------------------K-VN---------------KNEIMDALESVE 123 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTC--------------------C-CC---------------HHHHHHHHHHTT
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCC--------------------c-hH---------------HHHHHHHHHHcC
Confidence 99999999999999999999886432110 0 00 113456789999
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
|++. +..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. ++|+|++.|++. +
T Consensus 124 l~~~-~~~~~~-----LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~ 195 (214)
T 1sgw_A 124 VLDL-KKKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-S 195 (214)
T ss_dssp CCCT-TSBGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-T
T ss_pred CCcC-CCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-H
Confidence 9877 766654 9999999999999999999999999999999999999999999998754 788888877654 6
Q ss_pred HHhhcCEEEEEcCCeE
Q 037155 425 TYDLFDDIILISEGQI 440 (1403)
Q Consensus 425 ~~~~fD~IilL~~G~i 440 (1403)
+..++|+|++ ..|+|
T Consensus 196 ~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 196 YCDVNENLHK-YSTKI 210 (214)
T ss_dssp TSSEEEEGGG-GBC--
T ss_pred HHHhCCEEEE-eCCcc
Confidence 6777777764 44443
No 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.9e-36 Score=353.58 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=173.4
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.+. .++..+|+|||++|++||+++|+|||||||||||++|+|... .+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 467888876542 134569999999999999999999999999999999999764 479999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccC------CCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGL------PGV 1022 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 1022 (1403)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.+..++.... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 43 335678999999999887 69999996421 111 23478899999998877765431 112
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .++|||+++|+++ ....||++++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999874 4899999999975 4466999999985 8
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999985
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-34 Score=367.35 Aligned_cols=210 Identities=24% Similarity=0.405 Sum_probs=167.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
.++|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|+++.+...
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---------------------~~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP---------------------ASGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC---------------------SEEEEEETTEETTTBCHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---------------------CCcEEEECCEEhhhCCHHH
Confidence 4699999999999999999999999999999999999865 58999999998876543
Q ss_pred -cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 -~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++||+|++.+++ .||+||+.|+..... ..+.++..+++...+. +..+
T Consensus 416 ~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~----------------------~~~~~~~~~~~~~~~l------~~~~ 466 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFS-CSIAENIAYGADDPS----------------------SVTAEEIQRVAEVANA------VAFI 466 (595)
T ss_dssp HHHSEEEECSSCCCCS-SBHHHHHHTTSSSTT----------------------TSCHHHHHHHHHHTTC------HHHH
T ss_pred HHhceEEEccCCcccC-CCHHHHHhhcCCCcc----------------------ccCHHHHHHHHHHcCC------HHHH
Confidence 467999999999887 499999998632100 0001111122111110 1111
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
-.+++..||.+|+ .+..|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++|+|++.|+
T Consensus 467 --~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 541 (595)
T 2yl4_A 467 --RNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHR 541 (595)
T ss_dssp --HTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCC
T ss_pred --HhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecC
Confidence 1467788999985 5677999999999999999999999999999999999999999999999864 6898888776
Q ss_pred CchhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 421 PAPETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 421 ~~~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
+. ..+.+|+|++|++|++++.|+++++.
T Consensus 542 ~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 542 LS--TIKNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HH--HHHHSSEEEEEETTEEEEEECSCC--
T ss_pred HH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 54 44679999999999999999999875
No 88
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.8e-35 Score=324.18 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=156.6
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 7 l~~~~l~~~y~-----------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g---- 69 (229)
T 2pze_A 7 VVMENVTAFWE-----------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---- 69 (229)
T ss_dssp EEEEEEEECSS-----------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC----
Confidence 56777765431 1235699999999999999999999999999999999998663 489999998
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCccc-------ccccCCCCCCC
Q 037155 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRD-------ALVGLPGVNGL 1025 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~~L 1025 (1403)
.+||++|++.+++. ||+||+.++.. .... ..+++++.+++.+..+ +.++. .+..|
T Consensus 70 ------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 70 ------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITL 131 (229)
T ss_dssp ------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTS
T ss_pred ------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcC
Confidence 38999999988875 99999987531 1111 1234455555543222 22332 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1104 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~ 1104 (1403)
||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ .+ +.||++++|++ |++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999997 45654 4899999999975 34 56999999985 789
Q ss_pred EEecCC
Q 037155 1105 IYAGPL 1110 (1403)
Q Consensus 1105 ~~~g~~ 1110 (1403)
++.|+.
T Consensus 208 ~~~g~~ 213 (229)
T 2pze_A 208 YFYGTF 213 (229)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 888874
No 89
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.1e-35 Score=326.60 Aligned_cols=199 Identities=23% Similarity=0.382 Sum_probs=154.7
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
+.++|+++.+. .+++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 56677765431 113569999999999999999999999999999999999875 3589999998
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCC------CCc-ccccccCCCCCCC
Q 037155 953 QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVEL------KPL-RDALVGLPGVNGL 1025 (1403)
Q Consensus 953 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L------~~~-~~~~vg~~~~~~L 1025 (1403)
.+||++|++. ++.+||+||+.+.... . .+. .+++++.+++ .+. .++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~----~--~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL----E--EPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC----C--TTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc----C--HHH----HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2899999986 4688999999885321 1 111 2233333333 221 1112222 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 443 48999999999873 4 57999999985 7
Q ss_pred EEEEecCC
Q 037155 1103 RVIYAGPL 1110 (1403)
Q Consensus 1103 ~~~~~g~~ 1110 (1403)
++++.|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 99988874
No 90
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.4e-33 Score=348.65 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=174.6
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEh
Confidence 5788888876521 124699999999999999999999999999999999997663 479999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.+++. ||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 42 4466789999999988874 99999998531 1 122 23467888888886554 3445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|||+++|+++ ..+.||++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 999999999986 3457999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 899998874
No 91
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-34 Score=320.24 Aligned_cols=196 Identities=22% Similarity=0.321 Sum_probs=152.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~g---------- 69 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---------------------SEGKIKHSG---------- 69 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SEEEEEECS----------
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---------------------CccEEEECC----------
Confidence 5699999999999999999999999999999999999865 589999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++|++|++.+++. ||+||+.|+..... .+ .++..+.. + .+..++.
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~---------------------~~~~~~~~---~------l~~~~~~- 115 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVSYDE--YR---------------------YRSVIKAC---Q------LEEDISK- 115 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSCCCH--HH---------------------HHHHHHHT---T------CHHHHTT-
T ss_pred EEEEEecCCcccCC-CHHHHhhccCCcCh--HH---------------------HHHHHHHh---C------cHHHHHh-
Confidence 49999999988885 99999998632100 00 00000000 0 0111221
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCc
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFL-KQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~~ 422 (1403)
++...++.+++ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.+ +++. .++|+|++.|++.
T Consensus 116 -~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~ 191 (229)
T 2pze_A 116 -FAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME 191 (229)
T ss_dssp -STTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH
T ss_pred -CcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH
Confidence 33445566653 35679999999999999999999999999999999999999999974 5543 3678888877643
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
++ ..+|+|++|++|++++.|+++++.
T Consensus 192 -~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 192 -HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred -HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 44 469999999999999999998874
No 92
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=321.32 Aligned_cols=196 Identities=23% Similarity=0.343 Sum_probs=152.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g---------- 66 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---------------------VEGHVAIKG---------- 66 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---------------------EEEEEEECS----------
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCceEEECC----------
Confidence 4699999999999999999999999999999999999865 589999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++||+|++.+ +.+||+||+.|+.... . ...++..+++ .+.+.+
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~~--~---------------------~~~~~~~~~~------------~l~~~~ 110 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQLE--E---------------------PYYRSVIQAC------------ALLPDL 110 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCCC--T---------------------THHHHHHHHT------------TCHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCccccC--H---------------------HHHHHHHHHH------------hhHHHH
Confidence 39999999865 5789999999863211 0 0000110100 012223
Q ss_pred CC-cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEe
Q 037155 344 GL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLK---QMVHIMDVTMIVALL 419 (1403)
Q Consensus 344 gL-~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~---~l~~~~~~tvii~~~ 419 (1403)
++ +...+|.++ .....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+ ++. .++|+|++.|
T Consensus 111 ~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH 187 (237)
T 2cbz_A 111 EILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTH 187 (237)
T ss_dssp TTSTTGGGSEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECS
T ss_pred Hhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEec
Confidence 32 223444444 3456699999999999999999999999999999999999999999985 332 3788888887
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
++. .+ ..+|+|++|++|++++.|+++++.+
T Consensus 188 ~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 188 SMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp CST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred ChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 765 33 5799999999999999999988753
No 93
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.6e-34 Score=361.53 Aligned_cols=215 Identities=27% Similarity=0.374 Sum_probs=176.3
Q ss_pred EEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 873 LTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 873 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
++++|+++.++. .+++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 342 i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCEEhh
Confidence 788998876521 0124699999999999999999999999999999999998663 4899999998864
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCc-------ccccccCCCC
Q 037155 953 Q---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPL-------RDALVGLPGV 1022 (1403)
Q Consensus 953 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~~ 1022 (1403)
. ..+++.+|||+|++.+++ .||+||+.++.... ...+ ++.++++++.+++.+. .|+.+|.. .
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~ 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-G 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-S
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-C
Confidence 3 345678999999998886 59999999863210 1122 2346788888887543 45566654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1023 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++ ..+.||++++|++ |
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLDQ-G 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 899999999986 3457999999985 8
Q ss_pred EEEEecCCC
Q 037155 1103 RVIYAGPLG 1111 (1403)
Q Consensus 1103 ~~~~~g~~~ 1111 (1403)
++++.|+..
T Consensus 558 ~i~~~g~~~ 566 (595)
T 2yl4_A 558 KITEYGKHE 566 (595)
T ss_dssp EEEEEECSC
T ss_pred EEEEECCHH
Confidence 999998854
No 94
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.2e-34 Score=363.03 Aligned_cols=212 Identities=24% Similarity=0.360 Sum_probs=173.3
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|+++.++. +++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 45888998876521 235699999999999999999999999999999999998764 48999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
... ..+++.+|||+|++.+++. ||+||+.++. + .... +.+.++++..++.+ -.|+.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 643 4466789999999988876 9999998852 1 1122 23556666666543 234555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
...||||||||++|||||+++|+||+|||||||||+.++..+++.++++. +|+|+|+++|+++. + +.||++++|++
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN 550 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 34699999999999999999999999999999999999999999999985 48999999999873 4 56999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 551 -G~i~~~g~~ 559 (578)
T 4a82_A 551 -GHIVETGTH 559 (578)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999985
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-34 Score=364.99 Aligned_cols=212 Identities=21% Similarity=0.301 Sum_probs=172.4
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 35889998876521 235699999999999999999999999999999999998764 48999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKP-------LRDALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1020 (1403)
... ..+++.+|||+|++.+++. ||+||+.++.. ....+ .+.++++..++.+ -.|+.++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 643 3456789999999988865 99999987531 11222 2344555555433 345556644
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....||++++|++
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 34799999999999999999999999999999999999999999999985 5899999999986 3468999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 553 -G~i~~~g~~ 561 (587)
T 3qf4_A 553 -GKVAGFGTH 561 (587)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999985
No 96
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.6e-34 Score=359.19 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=174.7
Q ss_pred EEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 872 SLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 872 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 4788888765420 124699999999999999999999999999999999998664 489999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCCC
Q 037155 952 KQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLPG 1021 (1403)
Q Consensus 952 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 1021 (1403)
.. ..+++.+|||+|++.+++. ||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456789999999988875 99999998531 1 122 23367888888886543 4455544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1022 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
...||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999865 9999999999873 357999999985
Q ss_pred cEEEEecCC
Q 037155 1102 GRVIYAGPL 1110 (1403)
Q Consensus 1102 G~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 899998874
No 97
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.8e-34 Score=359.13 Aligned_cols=211 Identities=23% Similarity=0.360 Sum_probs=170.2
Q ss_pred cEEEEeeceeeeeccccccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 871 LSLTFNQMNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 871 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
..++++|+++.++ +++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 3588888877542 134699999999999999999999999999999999998764 48999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcc-------cccccCC
Q 037155 951 KKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLR-------DALVGLP 1020 (1403)
Q Consensus 951 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1020 (1403)
... ..+++.+|||+|++.+++ .||+||+.++.. +.+. +.++++++..++.+.. |+.+|..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 643 446778999999998875 599999987521 1111 1245555555554332 3333322
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++. + +.||++++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 24699999999999999999999999999999999999999999999986 59999999999973 4 56999999985
Q ss_pred CcEEEEecCC
Q 037155 1101 GGRVIYAGPL 1110 (1403)
Q Consensus 1101 gG~~~~~g~~ 1110 (1403)
|++++.|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 899999974
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.1e-33 Score=317.87 Aligned_cols=184 Identities=23% Similarity=0.376 Sum_probs=147.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
+.+|+|||++|++|+++||+||||||||||+++|+|... +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 458999999999999999999999999999999999876 3589999998 38999999988775 9999
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA-------LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1050 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDE 1050 (1403)
|+. +. . .... .++++++.+++.+..+. .++. .+..||||||||++|||||+.+|++|+|||
T Consensus 118 nl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 1 1111 13445555665433222 2221 235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1051 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |++++.|+.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~ 242 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 242 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999974 5554 4899999999975 3356999999985 789888875
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=1.6e-32 Score=314.99 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=148.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++| .+|+|.++|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~~g---------- 99 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---------------------SEGKIKHSG---------- 99 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---------------------EEEEEECCS----------
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCcEEEECC----------
Confidence 3589999999999999999999999999999999999865 589999998
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++||+|++.+++. ||+||+. +.... ... .++..+.. + .+..++.
T Consensus 100 ~i~~v~Q~~~l~~~-tv~enl~-~~~~~----~~~-------------------~~~~~~~~---~------l~~~l~~- 144 (290)
T 2bbs_A 100 RISFCSQNSWIMPG-TIKENII-GVSYD----EYR-------------------YRSVIKAC---Q------LEEDISK- 144 (290)
T ss_dssp CEEEECSSCCCCSS-BHHHHHH-TTCCC----HHH-------------------HHHHHHHT---T------CHHHHHT-
T ss_pred EEEEEeCCCccCcc-cHHHHhh-Ccccc----hHH-------------------HHHHHHHh---C------hHHHHHh-
Confidence 48999999988875 9999997 42110 000 00000000 0 0111222
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCc
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFL-KQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~~ 422 (1403)
++...++.+++ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.+ +++. .++|+|++.|++.
T Consensus 145 -~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~ 220 (290)
T 2bbs_A 145 -FAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME 220 (290)
T ss_dssp -STTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH
T ss_pred -ccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHH
Confidence 33344555553 35669999999999999999999999999999999999999999974 4443 3778888877653
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHH
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVL 450 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~ 450 (1403)
.+ ..+|+|++|++|++++.|+++++.
T Consensus 221 -~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 221 -HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp -HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred -HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 44 569999999999999999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.98 E-value=3.7e-32 Score=369.41 Aligned_cols=211 Identities=24% Similarity=0.345 Sum_probs=170.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc-
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP- 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~- 261 (1403)
+.++|+|+|++|+|||+++|+||||||||||+++|+|.++| .+|+|.++|+++.....
T Consensus 1045 ~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---------------------~~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---------------------MAGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC---------------------SEEEEESSSSCTTSSCHH
T ss_pred CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---------------------CCCEEEECCEEcccCCHH
Confidence 34699999999999999999999999999999999999865 58999999999876543
Q ss_pred --cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 --~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
++.++||+|++.+++ .||+|||.++...... +.++..+++...+. +..
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~~------~~~ 1153 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVV-----------------------SYEEIVRAAKEANI------HQF 1153 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHTC------HHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhCc------HHH
Confidence 577999999998775 6999999886321110 01111122111110 111
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL 419 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 419 (1403)
.-.+++++||.||+ .+..|||||||||+|||||+++|+||+|||||+|||+.+...|.+.|++.. .|+|+|++.|
T Consensus 1154 --i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH 1228 (1284)
T 3g5u_A 1154 --IDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAH 1228 (1284)
T ss_dssp --HSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECS
T ss_pred --HHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEec
Confidence 23478899999995 567799999999999999999999999999999999999999999998753 4788888777
Q ss_pred cCchhHHhhcCEEEEEcCCeEEEecChhhHHH
Q 037155 420 QPAPETYDLFDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 420 q~~~~~~~~fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
... + ...+|+|++|++|+++++|+++++.+
T Consensus 1229 ~l~-~-i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1229 RLS-T-IQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp CTT-G-GGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CHH-H-HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 654 3 46699999999999999999999874
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=2.4e-29 Score=315.86 Aligned_cols=191 Identities=27% Similarity=0.315 Sum_probs=160.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
.|+++|+.+++||+++|+|||||||||||++|+|.++| .+|+|.+ .+.+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~I~~----------~~~i 419 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP---------------------TEGKVEW----------DLTV 419 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SBSCCCC----------CCCE
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CceEEEE----------eeEE
Confidence 57788888999999999999999999999999999865 4788875 2469
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+|++|+....+.+||+|++...... .. . ....++.+++.+||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~-----------~~---~------------------------~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSS-----------KL---N------------------------SNFYKTELLKPLGI 461 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHH-----------HH---H------------------------CHHHHHHTHHHHTC
T ss_pred EEEecCccCCCCCcHHHHHHhhhcc-----------CC---C------------------------HHHHHHHHHHHcCC
Confidence 9999998777889999988542000 00 0 01134567899999
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.| ...++
T Consensus 462 ~~~~~~~~~~-----LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH-d~~~~ 535 (607)
T 3bk7_A 462 IDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMI 535 (607)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHH
T ss_pred chHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHH
Confidence 9888888876 99999999999999999999999999999999999999999999997666788887654 55688
Q ss_pred HhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 426 YDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 426 ~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
..++|+|++|++ |+++..|+++++..
T Consensus 536 ~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 536 DYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 889999999986 88899999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3.5e-29 Score=311.45 Aligned_cols=191 Identities=27% Similarity=0.312 Sum_probs=158.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
.|+++|+.+++||+++|+|||||||||||++|+|.++| .+|+|.+ ...+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---------------------~~G~i~~----------~~~i 349 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---------------------TEGKIEW----------DLTV 349 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---------------------SBCCCCC----------CCCE
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCeEEEE----------CceE
Confidence 57777888899999999999999999999999999865 4788875 2369
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+|++|+....+.+||.|++...... .. . ....++.+++.+||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~-----------~~----------~-----------------~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDAS-----------KL----------N-----------------SNFYKTELLKPLGI 391 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHH-----------HH----------T-----------------CHHHHHHTTTTTTC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhcc-----------CC----------C-----------------HHHHHHHHHHHcCC
Confidence 9999998777889999987542000 00 0 01124557888999
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+..+..+++ |||||||||+||+||+.+|++|+|||||+|||..++.+|.+.|+++++..+.|+|++.| ...++
T Consensus 392 ~~~~~~~~~~-----LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~ 465 (538)
T 1yqt_A 392 IDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMI 465 (538)
T ss_dssp GGGTTSBGGG-----CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHH
T ss_pred hhhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHH
Confidence 8888888876 99999999999999999999999999999999999999999999987655778877654 56688
Q ss_pred HhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 426 YDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 426 ~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
..+||+|++|++ |+++..|+++++..
T Consensus 466 ~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 466 DYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 899999999986 78999999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.1e-28 Score=306.14 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=157.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
.|+++|+.+++||+++|+||||||||||+++|+|.++| .+|+|.++| +.+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p---------------------~~G~i~~~~---------~~i 332 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA---------------------DEGSVTPEK---------QIL 332 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---------------------SBCCEESSC---------CCE
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC---------------------CCcEEEECC---------eee
Confidence 56777888999999999999999999999999999865 589998765 358
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+|++|+......+||+||+.+..... . .. .....+.+++.+||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNL 375 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTG
T ss_pred EeechhcccccCCCHHHHHHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCC
Confidence 99999977667889999997632100 0 00 01123556788999
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+..+..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++. |...++
T Consensus 376 ~~~~~~~~~~-----LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hdl~~~ 449 (538)
T 3ozx_A 376 HRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HDLSIH 449 (538)
T ss_dssp GGCTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC-SCHHHH
T ss_pred HHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHH
Confidence 9888888876 9999999999999999999999999999999999999999999999876677877765 556688
Q ss_pred HhhcCEEEEEcC--CeEEEecChhhHH
Q 037155 426 YDLFDDIILISE--GQIVYHGPRDNVL 450 (1403)
Q Consensus 426 ~~~fD~IilL~~--G~iv~~G~~~~~~ 450 (1403)
..+||+|++|++ |.+...|++.++.
T Consensus 450 ~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 450 DYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHhCCEEEEEeCCcceeccCCChHHHH
Confidence 899999999986 5667777766554
No 104
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.9e-28 Score=316.55 Aligned_cols=182 Identities=19% Similarity=0.283 Sum_probs=149.7
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCC-CCCCCCC
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTD-IHSPHVT 974 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lT 974 (1403)
+++.+|+|+||++++|++++|+|||||||||||++|+| |.| +|.+... ...++|++|+. .+++.+|
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc---ceeEEEEcccccccccCCc
Confidence 34679999999999999999999999999999999994 111 3433221 12368999874 6778999
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
|.|++.+ ... .. .+.++++++.+|+. +..++.++ .|||||||||+||++|+.+|+||||||||+
T Consensus 513 v~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999976 111 11 34578999999994 56676654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecCC
Q 037155 1054 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YAGPL 1110 (1403)
Q Consensus 1054 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~-~~g~~ 1110 (1403)
|||+.++..+.+.|++ .|+|||++||+++ .+.+.||++++|++ |+++ +.|+.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 9999999999999998 5899999999976 57788999999985 6775 67875
No 105
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=8.2e-29 Score=317.92 Aligned_cols=205 Identities=22% Similarity=0.301 Sum_probs=135.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHH---------------------HhhcCCCCC--cee---EEEEEEcCccC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---EGDIKISGYPK 951 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~--~~~---~G~i~i~g~~~ 951 (1403)
..+|+||||+|++||++||+||||||||||+ +++.|...+ +.+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 566654322 112 35677777654
Q ss_pred ChhhhcceeeEeecCCCC-------------------CCCCCHHHHHHHHHhhhCCCCCcHHHHH------HHHHHHHHH
Q 037155 952 KQETFARVSGYCEQTDIH-------------------SPHVTLYESLLYSAWLRLSSDVDTKKRK------IFVDEVMEL 1006 (1403)
Q Consensus 952 ~~~~~~~~~gyv~Q~~~~-------------------~~~lTv~e~l~~~~~lr~~~~~~~~~~~------~~v~~~l~~ 1006 (1403)
... .++.+||++|...+ ++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 23445666664432 356899999987533221110 000000 011245888
Q ss_pred cCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 037155 1007 VELKPL-RDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1007 l~L~~~-~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1083 (1403)
+||.+. .++.++ .|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 466544 799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHhcCeEEEEe-----cCcEEEEecCCC
Q 037155 1084 PSIDIFEAFDELLLMK-----RGGRVIYAGPLG 1111 (1403)
Q Consensus 1084 ~~~~~~~~~d~i~ll~-----~gG~~~~~g~~~ 1111 (1403)
++ ....||++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 75 456799999992 358999999864
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-28 Score=305.95 Aligned_cols=193 Identities=24% Similarity=0.236 Sum_probs=158.4
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC
Q 037155 184 VQILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~G-----e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~ 258 (1403)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++| .+|+. +
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p---------------------~~G~~------~-- 410 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP---------------------DEGQD------I-- 410 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC---------------------SBCCC------C--
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC---------------------CCCcC------c--
Confidence 35789999999999 77999999999999999999999865 46652 1
Q ss_pred CCccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHH
Q 037155 259 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDY 338 (1403)
Q Consensus 259 ~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1403)
.+..++|++|+.......||+|++....+ +. ..+ ....+.
T Consensus 411 --~~~~i~~~~q~~~~~~~~tv~e~~~~~~~--~~-------------------~~~-----------------~~~~~~ 450 (608)
T 3j16_B 411 --PKLNVSMKPQKIAPKFPGTVRQLFFKKIR--GQ-------------------FLN-----------------PQFQTD 450 (608)
T ss_dssp --CSCCEEEECSSCCCCCCSBHHHHHHHHCS--ST-------------------TTS-----------------HHHHHH
T ss_pred --cCCcEEEecccccccCCccHHHHHHHHhh--cc-------------------ccc-----------------HHHHHH
Confidence 23469999999766666799998753211 00 000 012345
Q ss_pred HHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 339 VLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 339 il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
+++.+||.+..|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..|.|+|++.
T Consensus 451 ~l~~l~l~~~~~~~~~~-----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivt 525 (608)
T 3j16_B 451 VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525 (608)
T ss_dssp THHHHTSTTTSSSBSSS-----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 78899999988888876 9999999999999999999999999999999999999999999998765688888765
Q ss_pred ecCchhHHhhcCEEEEEcC--CeEEEecChhhHHH
Q 037155 419 LQPAPETYDLFDDIILISE--GQIVYHGPRDNVLE 451 (1403)
Q Consensus 419 ~q~~~~~~~~fD~IilL~~--G~iv~~G~~~~~~~ 451 (1403)
| ...++..++|+|++|++ |+++..|+++++..
T Consensus 526 H-dl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 526 H-DFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp S-CHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred C-CHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 4 55688899999999986 89999999998875
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.95 E-value=7.2e-30 Score=318.64 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=112.6
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhh
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWL 985 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l 985 (1403)
+.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|++. .++.++. .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~-----~ 329 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA-----Y 329 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----H
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----H
Confidence 37999999999999999999999999985321 121 12345555431 1122221 1
Q ss_pred hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 037155 986 RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----AA 1060 (1403)
Q Consensus 986 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~-----~~ 1060 (1403)
+. +.+ +++ +...|+....+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .+
T Consensus 330 ~~--g~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SW--GMD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TT--SCC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred Hc--CCC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11 111 112 2245555554443 3479999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCc---------HHHHHhcCeEEEEec
Q 037155 1061 AIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1061 ~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~d~i~ll~~ 1100 (1403)
..+.++++.+++.|+|||+++|++. ..+...+|++++|.+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE
Confidence 9999999999888999999999971 235678999999986
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=7.6e-24 Score=274.05 Aligned_cols=108 Identities=24% Similarity=0.312 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 037155 335 VTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGAA---KVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410 (1403)
Q Consensus 335 ~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 410 (1403)
....+|+.+||... .+..+ ..|||||||||+||+||+.+| ++|+|||||+|||+.+...+++.|+++++ .
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 34567889999753 23333 459999999999999999865 79999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHH
Q 037155 411 DVTMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVL 450 (1403)
Q Consensus 411 ~~tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~ 450 (1403)
|.|+|++.|.. +....+|+|++| ++|+|++.|+++++.
T Consensus 858 G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 88888876654 345679999999 899999999999985
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=5.9e-24 Score=272.38 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=92.2
Q ss_pred HHHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 337 DYVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAA---KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 337 ~~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999987 66777765 9999999999999999764 99999999999999999999999999976 478
Q ss_pred EEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHH
Q 037155 413 TMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVL 450 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~ 450 (1403)
|+|++.|... + ...+|+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 8888766543 4 4789999999 789999999999875
No 110
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.90 E-value=3.5e-24 Score=260.12 Aligned_cols=203 Identities=17% Similarity=0.150 Sum_probs=140.4
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCC------------------------------------ceeEE
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYIEG 942 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 942 (1403)
.+|+++|+.+.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999542210 01157
Q ss_pred EEEEcCccCChhh---h-cceeeEeecCCCCCCCCCHHHHHHHHHhhh-----------------------CCCCCc---
Q 037155 943 DIKISGYPKKQET---F-ARVSGYCEQTDIHSPHVTLYESLLYSAWLR-----------------------LSSDVD--- 992 (1403)
Q Consensus 943 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr-----------------------~~~~~~--- 992 (1403)
.+.+||.+.+... . ...+++++|++.+... +..+...|.-... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2348999998766532 4444433321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCCcc----------------cc---cccC---
Q 037155 993 -------------------------------TKKRKIFVDEVMELVELKPLR----------------DA---LVGL--- 1019 (1403)
Q Consensus 993 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~vg~--- 1019 (1403)
.......+.+.++.+++.... +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344556666654310 00 1110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 037155 1020 ---PGVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1093 (1403)
Q Consensus 1020 ---~~~~~-LSgGqrqRl~IA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1093 (1403)
..+.. ||||||||++||++|+.+| ++|||||||+|||+.+...+.+.|++++ +|+|||+|||++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 01112 6999999999999999999 9999999999999999999999999997 589999999997 4567899
Q ss_pred eEEEE----ecCcEEEEe
Q 037155 1094 ELLLM----KRGGRVIYA 1107 (1403)
Q Consensus 1094 ~i~ll----~~gG~~~~~ 1107 (1403)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 64 666543
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=1.3e-23 Score=269.74 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChhHhhHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 037155 335 VTDYVLKLLGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGA---AKVLLMDEISTGLDSSTTFQICKFLKQMVHIM 410 (1403)
Q Consensus 335 ~~~~il~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~aL~~~---p~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 410 (1403)
.+..+++.+||... .+..+++ |||||||||+||++|+.+ |++|+|||||+|||..+...|.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999873 5666654 999999999999999996 799999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHH
Q 037155 411 DVTMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVL 450 (1403)
Q Consensus 411 ~~tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~ 450 (1403)
|.|+|++.|. ..++ ..+|+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 7888877654 4455 889999999 799999999999874
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.5e-26 Score=275.29 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=144.4
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcce-E-EEECCccCCCCCccceE
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASG-K-ITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~ 265 (1403)
.++|+.+++|++++|+||||||||||+++|+|.+.+ .+| + |.++|. +++.+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---------------------~~G~~pI~vdg~------~~~~i 181 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---------------------FNAYQPLYINLD------PQQPI 181 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---------------------HHCCCCEEEECC------TTSCS
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---------------------cCCceeEEEcCC------ccCCe
Confidence 379999999999999999999999999999999854 479 8 999982 36679
Q ss_pred EEeccCCC---CCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 266 AYISQHDL---HHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 266 ~yv~Q~d~---~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
+|++|+.. +.+.+||+||+ |+.+. .+... . ..++.+++
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~-------------------~------------------~~~~~ll~ 223 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATL-------------------L------------------HNKQPMVK 223 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS-------------------S------------------CCBCCEEC
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcch-------------------H------------------HHHHHHHH
Confidence 99999983 55678999999 76442 11000 0 00112456
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHH--HhcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEM--LVGAAKV----LLMDE-ISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~a--L~~~p~i----llLDE-ptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
.+||++..+ . ..|||||||||++|+| |+.+|++ |+||| ||++||+. ...+.+.+++ .+.|+
T Consensus 224 ~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tv 291 (460)
T 2npi_A 224 NFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNI 291 (460)
T ss_dssp CCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCE
T ss_pred HhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCE
Confidence 678877665 3 4599999999999999 9999999 99999 99999999 4445554443 46788
Q ss_pred EEEEecCch-----hHHhhcCE-----EEEEc-CCeEEEecChhhHH
Q 037155 415 IVALLQPAP-----ETYDLFDD-----IILIS-EGQIVYHGPRDNVL 450 (1403)
Q Consensus 415 ii~~~q~~~-----~~~~~fD~-----IilL~-~G~iv~~G~~~~~~ 450 (1403)
|+++|++.. ++.+++|+ |++|+ +|+++ .|+++++.
T Consensus 292 iiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 888887662 45588999 99999 99999 99987663
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=1.4e-23 Score=270.00 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=92.3
Q ss_pred HHHHHHcCCcc-cccccccCccCCCCChhHhhHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 037155 337 DYVLKLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGAA---KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDV 412 (1403)
Q Consensus 337 ~~il~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 412 (1403)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|+|||||+|||+.+...|.+.|+++++ .|.
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 917 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPT-----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGN 917 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGG-----SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCcccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 46789999987 56666655 9999999999999999864 99999999999999999999999999976 478
Q ss_pred EEEEEEecCchhHHhhcCEEEEE------cCCeEEEecChhhHHH
Q 037155 413 TMIVALLQPAPETYDLFDDIILI------SEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 413 tvii~~~q~~~~~~~~fD~IilL------~~G~iv~~G~~~~~~~ 451 (1403)
|+|++.|... + ...+|+|++| ++|++++.|+++++.+
T Consensus 918 TVIvisHdl~-~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVIEHNLD-V-IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEECCCHH-H-HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEEcCCHH-H-HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 8888766543 4 4789999999 7899999999998753
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.7e-26 Score=277.96 Aligned_cols=196 Identities=15% Similarity=0.080 Sum_probs=148.5
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-E-EEEcCccCChhhhcceeeEeecCCC---CCCCCCHH
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-D-IKISGYPKKQETFARVSGYCEQTDI---HSPHVTLY 976 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~lTv~ 976 (1403)
.++|+.+++|++++|+||||||||||+++|+|...+ .+| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 479999999999999999999999999999997652 368 8 999983 2466899999874 45568999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1050 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~a--L~~~P~i----llLDE 1050 (1403)
||+ |+........ . .+.+.++++.+|+.+..+ ...|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~--~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT--L---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC--S---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc--h---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 6543211110 0 112456777788877655 23699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCe-----EEEEecCcEEEEecCCCcc----hh
Q 037155 1051 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LLLMKRGGRVIYAGPLGRE----SH 1115 (1403)
Q Consensus 1051 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----i~ll~~gG~~~~~g~~~~~----~~ 1115 (1403)
||++||+. ...+.+.++++ |+|+|+++|+.+ . ++.+.+|+ +++|+++|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 66666666553 789999999976 3 34578899 99998346677 7764321 23
Q ss_pred HHHHHHHh
Q 037155 1116 KLIEYFEA 1123 (1403)
Q Consensus 1116 ~~~~~f~~ 1123 (1403)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45667754
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.87 E-value=2.6e-22 Score=243.55 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=150.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchh--------------hc-c---cchhhhhhhccCCCc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRV--------------RF-Q---SNKFLIIRIWKTEQA 245 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~--------------~~-~---~~~~~~~~~~~~~~~ 245 (1403)
..+++++|+.+++| +++|+|||||||||||++|.+.+...... .| . +......+.. ..+.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~-~~~~ 125 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRL-SSAG 125 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEE-ETTS
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEE-ecCC
Confidence 45799999999999 99999999999999999998876421000 00 0 0000000000 0124
Q ss_pred ceEEEECCccCCCCCc----cceEEEeccCCCCCCCCCHHHHHHhhccccccc-c----hhhHHHHhhHHHHhcCCCCC-
Q 037155 246 SGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQQGIKPD- 315 (1403)
Q Consensus 246 ~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~-~----~~~~~~~~~~~e~~~~i~~~- 315 (1403)
+|++.+||.+++.... ...+++++|++.++.. +..+...|--...... . .+.......+.... -....
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~-l~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLER-LQASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-C-----
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHhhhh
Confidence 6889999988754221 2348999999866543 6665555532211000 0 00000000000000 00000
Q ss_pred ----------chHHHHHHHHHh-----------hccchhHHHHHHHHHcCCcccc----------------cc---cccC
Q 037155 316 ----------PEIDAFMKAVAV-----------AGQETSLVTDYVLKLLGLDICA----------------DT---MVGD 355 (1403)
Q Consensus 316 ----------~~~~~~~~~~~~-----------~~~~~~~~~~~il~~lgL~~~~----------------dt---~vg~ 355 (1403)
.+.+...+.... ....-...++..++.++++... +. .++.
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 001111100000 0001122344556667665410 00 1111
Q ss_pred ------ccCCC-CChhHhhHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 037155 356 ------EMRRG-ISGGQKKRVTTGEMLVGAA--KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETY 426 (1403)
Q Consensus 356 ------~~~rg-LSGGqkqRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~ 426 (1403)
...+. +||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|++++ .+.|+|++.|.+ ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHH
Confidence 00111 6999999999999999999 9999999999999999999999999987 378888887764 567
Q ss_pred hhcCEEEEE----cCCeEEEec
Q 037155 427 DLFDDIILI----SEGQIVYHG 444 (1403)
Q Consensus 427 ~~fD~IilL----~~G~iv~~G 444 (1403)
+.+|++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=9.1e-22 Score=233.95 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1022 VNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~------~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999975 46789999
Q ss_pred EEEecCcEEEE
Q 037155 1096 LLMKRGGRVIY 1106 (1403)
Q Consensus 1096 ~ll~~gG~~~~ 1106 (1403)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 77753
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=3.4e-24 Score=234.42 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=98.7
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++++.+|+|| ++||+++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 3456789996 89999999999999999999999997 42 2344421100111122456799999975
Q ss_pred HHHHH-HHHH----hhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 037155 975 LYESL-LYSA----WLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1049 (1403)
Q Consensus 975 v~e~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLD 1049 (1403)
+||+ .+.. .+... .. .+.++++++. + + |||||++|||+|+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4555 2311 11110 01 1124445543 2 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
|||+| ++..+++.|+++ ++|+||| +||+++
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999998 6689999 999975
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=3.2e-21 Score=225.88 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE--
Q 037155 1022 VNGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1095 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i-- 1095 (1403)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|+|||++||+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3479999999999999997 6899999999999999999999999999985 4899999999964 66789986
Q ss_pred EEEecCcEEEEecCC
Q 037155 1096 LLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1096 ~ll~~gG~~~~~g~~ 1110 (1403)
++|.+|...+.....
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 788776666665554
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=2.4e-22 Score=213.50 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=101.4
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCC-CCCHHHHHHH
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSP-HVTLYESLLY 981 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~-~lTv~e~l~~ 981 (1403)
|||+++++||+++|+||||||||||++++.+... .+++ . ...|+++|+..... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 12367777642100 001111111
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1058 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~--- 1058 (1403)
. ..+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~-~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------Y-IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------H-HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------H-HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1 11122234544444432 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1059 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1059 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
....+++.|++++++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999988777999999999874
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.82 E-value=2.7e-20 Score=221.25 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=72.7
Q ss_pred CCCCChhHhhHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 358 RRGISGGQKKRVTTGEMLV------GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 358 ~rgLSGGqkqRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
...|||||||||+||+||+ .+|++|||||||+|||+.+..++.+.|+++.+ .|.|+|++.|++. ....+|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 3459999999999999999 79999999999999999999999999999865 5889888877653 4778999
Q ss_pred EEEEcCCeEEE
Q 037155 432 IILISEGQIVY 442 (1403)
Q Consensus 432 IilL~~G~iv~ 442 (1403)
|++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=5e-22 Score=217.23 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=95.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
.++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---------------------~G~I~~~~~~~~~~~~ 64 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---------------------SKQVSRIILTRPAVEA 64 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---------------------TTSCSEEEEEECSCCT
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---------------------CCeeeeEEecCCchhh
Confidence 456789996 89999999999999999999999999 763 4555211000011123
Q ss_pred cceEEEeccCCCCCCCCCHHHHH-HhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETL-DFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++ +||+ .+.... ++ .+. .... ...++.++
T Consensus 65 ~~~ig~v~q~~--------~enl~~~~~~~------~~---~~~------~~~~------------------~~~~~~~l 103 (208)
T 3b85_A 65 GEKLGFLPGTL--------NEKIDPYLRPL------HD---ALR------DMVE------------------PEVIPKLM 103 (208)
T ss_dssp TCCCCSSCC--------------CTTTHHH------HH---HHT------TTSC------------------TTHHHHHH
T ss_pred hcceEEecCCH--------HHHHHHHHHHH------HH---HHH------Hhcc------------------HHHHHHHH
Confidence 56799999975 6777 442100 00 000 0000 01123333
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+. | + ||||||+|||||+.+|++|+|||||+| ++.++.+.|+++ + .+.|+| +.|+
T Consensus 104 ~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd 157 (208)
T 3b85_A 104 EA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGD 157 (208)
T ss_dssp HT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC
T ss_pred Hh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECC
Confidence 32 2 2 999999999999999999999999999 888999999887 3 477877 6665
Q ss_pred C
Q 037155 421 P 421 (1403)
Q Consensus 421 ~ 421 (1403)
.
T Consensus 158 ~ 158 (208)
T 3b85_A 158 I 158 (208)
T ss_dssp -
T ss_pred H
Confidence 4
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=1e-22 Score=234.01 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=118.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+|.
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------------------------~G~I~------------- 155 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------------------------GGSVL------------- 155 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------------------------TCEEE-------------
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------------------------CceEE-------------
Confidence 46899999999999999999999999999999999975 47773
Q ss_pred eEEEeccCCCCCCCCCHHH-HHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 264 TCAYISQHDLHHGEMTVRE-TLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+|++|++.++.. |++| ||.|..... + .....++.
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~~~-------------------------~-----------------~~~~~i~~ 190 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDDAT-------------------------H-----------------ACWRYFDT 190 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEEEC-------------------------H-----------------HHHHHHHH
T ss_pred --EEecCccccccc-cHHHHhhccCcccc-------------------------H-----------------HHHHHHHH
Confidence 467888777764 8887 887641100 0 01112333
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+ |++..| | ..|||||||| ||||+.+|+||+ ||+||+.++..|.. ++| .
T Consensus 191 ~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----ltH-------------~ 238 (305)
T 2v9p_A 191 Y-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----LHS-------------R 238 (305)
T ss_dssp T-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----GTT-------------T
T ss_pred H-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----HhC-------------C
Confidence 3 555555 3 4699999999 999999999999 99999999888752 121 2
Q ss_pred hhHHhhcCEEEEEcCCeEEEecChhhHHHHHHHc
Q 037155 423 PETYDLFDDIILISEGQIVYHGPRDNVLEFFEQM 456 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G~~~~~~~~F~~~ 456 (1403)
.++...+|+| +|++|++++.|+++++..+|..+
T Consensus 239 ~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 239 VQTFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp EEEEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred HHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 2345678999 99999999999999996666553
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=9.8e-23 Score=243.55 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=134.0
Q ss_pred ceEeeeeEEEEeCCe--------------------EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhc
Q 037155 898 LQLLHSVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA 957 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 957 (1403)
+.+|++||+++++|+ ++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 458999999999999 9999999999999999999997653 3688888886542
Q ss_pred ceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHH
Q 037155 958 RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE--QRKRLTI 1035 (1403)
Q Consensus 958 ~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG--qrqRl~I 1035 (1403)
+ .+|++|++ .++++|+.|++.+.. . +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 28899985 567889988875542 1 11267889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCcH-HHHHhcCeE
Q 037155 1036 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDEL 1095 (1403)
Q Consensus 1036 A~aL~~----------~P~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~d~i 1095 (1403)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 32 3678899998752 255556655
Q ss_pred E
Q 037155 1096 L 1096 (1403)
Q Consensus 1096 ~ 1096 (1403)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.80 E-value=2.5e-23 Score=228.14 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=119.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
...+++| .++++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3557888 6899999999999999999999999999653 123333333332211 2245689999998777777777
Q ss_pred HHHHHHHhhhC---CCCCcHHHHHHHHHHH------HHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037155 977 ESLLYSAWLRL---SSDVDTKKRKIFVDEV------MELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1047 (1403)
Q Consensus 977 e~l~~~~~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~ill 1047 (1403)
+++........ ....+.++.++.+++. ++.+|+.+.++... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76542211110 0112333444445554 45555555555442 2466 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 037155 1048 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1102 (1403)
Q Consensus 1048 LDEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG 1102 (1403)
|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...||++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999974 5899999999987 6888999999986544
No 125
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=9.6e-20 Score=213.31 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCChhHhhHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEE--
Q 037155 359 RGISGGQKKRVTTGEMLV----GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI-- 432 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~I-- 432 (1403)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++. .+.++|++.|.+ ++.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEE
Confidence 349999999999999997 6899999999999999999999999999874 367888877763 678899987
Q ss_pred EEEcCCeE-EEecChhhH
Q 037155 433 ILISEGQI-VYHGPRDNV 449 (1403)
Q Consensus 433 ilL~~G~i-v~~G~~~~~ 449 (1403)
++|.+|.. +.....++.
T Consensus 294 v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEESSSCEEEEECCC---
T ss_pred EEEeCCEEEEEEEEcchh
Confidence 78888854 444554443
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=2e-20 Score=199.82 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=99.9
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~ 992 (1403)
.++|+||||||||||+++|+|.... ...|.. . ........++.+||++|+. ++.+++ + +.+.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~-~--~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~--~-- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFW-T--EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF--T-- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEE-E--EEEC------CCEEEEEET------TCCEEE-E-EETTC--C--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEE-h--hhhccccccceeEEEeecC------cHHHHH-H-HhhcC--C--
Confidence 6899999999999999999996531 122321 1 1111012356789999975 222322 1 11100 0
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 037155 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 1065 (1403)
Q Consensus 993 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~a-----L~~~P~illLDE--PTsgLD~~~~~~i~~ 1065 (1403)
-.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....+.+
T Consensus 66 ----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 ----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00122332 23699999999999996 999999999999 999999999999988
Q ss_pred HHHHHHhCCCEEEEEec---CCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1066 TVRNTVDTGRTVVCTIH---QPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1066 ~l~~~~~~g~tvi~~~H---~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
.+++ .+.|+|+++| +.+ .+...+|+ .+|+++...+
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8876 4778889986 543 45667776 4567766443
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=1.3e-21 Score=233.99 Aligned_cols=173 Identities=12% Similarity=0.105 Sum_probs=129.4
Q ss_pred cceeeeceEEEEeCCe--------------------EEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccC
Q 037155 183 DVQILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKT 242 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge--------------------~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~ 242 (1403)
...+|+|||+.+++|+ +++|+||||||||||+|+|+|..++
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p------------------- 95 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE------------------- 95 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-------------------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-------------------
Confidence 4568999999999999 9999999999999999999999864
Q ss_pred CCcceEEEECCccCCCCCccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHH
Q 037155 243 EQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFM 322 (1403)
Q Consensus 243 ~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~ 322 (1403)
.+|+|.++|.+.+ + .+|++|++ .++.+|+.||+.++..
T Consensus 96 --~~GsI~~~g~~~t----~--~~~v~q~~-~~~~ltv~D~~g~~~~--------------------------------- 133 (413)
T 1tq4_A 96 --EEGAAKTGVVEVT----M--ERHPYKHP-NIPNVVFWDLPGIGST--------------------------------- 133 (413)
T ss_dssp --STTSCCCCC--------C--CCEEEECS-SCTTEEEEECCCGGGS---------------------------------
T ss_pred --cCceEEECCeecc----e--eEEecccc-ccCCeeehHhhcccch---------------------------------
Confidence 5799999886543 1 27899985 5778899988755310
Q ss_pred HHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChh--HhhHHHHHHHHhc----------CCcEeEEeCCCCC
Q 037155 323 KAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------AAKVLLMDEISTG 390 (1403)
Q Consensus 323 ~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGG--qkqRvsia~aL~~----------~p~illLDEptsg 390 (1403)
....+.+++.++|.+.. ..+ . +||| ||||+.||++|.. +|++++|||||+|
T Consensus 134 ----------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 134 ----------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp ----------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 00134567778877653 222 2 8999 9999999999999 9999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH----hC----CcEEEEEEecCch-hHHhhcCEEE
Q 037155 391 LDSSTTFQICKFLKQMVH----IM----DVTMIVALLQPAP-ETYDLFDDII 433 (1403)
Q Consensus 391 LDs~t~~~i~~~L~~l~~----~~----~~tvii~~~q~~~-~~~~~fD~Ii 433 (1403)
||+.++.++.+.++++.. .. ..+++++.|.... .+.+++|+|.
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999998852 22 2345555543332 2555566553
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.78 E-value=6.2e-20 Score=194.85 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=53.7
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS----------------TTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~----------------t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. |.|+|++.|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 558889998888765 88888887654
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=3e-20 Score=198.41 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCCChhHhhHHHHHHH-----HhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe--cCchhHHhhc
Q 037155 359 RGISGGQKKRVTTGEM-----LVGAAKVLLMDE--ISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL--QPAPETYDLF 429 (1403)
Q Consensus 359 rgLSGGqkqRvsia~a-----L~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~--q~~~~~~~~f 429 (1403)
..||||||||++||+| ++.+|++++||| ||++||+.....+.+.+++ .+.|+|++.| |+.+.+..++
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHH
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHH
Confidence 3499999999999996 999999999999 9999999999999988875 3667888886 5666777778
Q ss_pred CEEEEEcCCeEEE
Q 037155 430 DDIILISEGQIVY 442 (1403)
Q Consensus 430 D~IilL~~G~iv~ 442 (1403)
|+ .+|++++
T Consensus 151 ~r----~~~~i~~ 159 (178)
T 1ye8_A 151 RL----PGAVLIE 159 (178)
T ss_dssp TC----TTCEEEE
T ss_pred hc----CCcEEEE
Confidence 87 5566664
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=1.9e-19 Score=207.98 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=129.7
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC------
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV------ 260 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~------ 260 (1403)
++++|+.+++|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+.....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~---------------------~~g~V~l~g~d~~r~~a~~ql~ 148 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN---------------------EGTKVLMAAGDTFRAAASDQLE 148 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH---------------------TTCCEEEECCCCSCHHHHHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH---------------------cCCeEEEEeecccchhHHHHHH
Confidence 3578899999999999999999999999999999864 4799999998764321
Q ss_pred -c--cceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 -P--QRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 -~--~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
. ++.++|++|++. .+|.+||+|++.++.. .+ .+
T Consensus 149 ~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~---------------------~d--------------------- 185 (302)
T 3b9q_A 149 IWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EG---------------------YD--------------------- 185 (302)
T ss_dssp HHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH-TT---------------------CS---------------------
T ss_pred HHHHhcCceEEEecCCccCHHHHHHHHHHHHHH-cC---------------------Cc---------------------
Confidence 1 246999999988 8889999999987421 00 00
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK--VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv 414 (1403)
..+++.+|+.+..+..+++ || |||++||++++.+|+ +|+|| ||+|||+... ++++.+..+.|+
T Consensus 186 ~~lldt~gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~ 250 (302)
T 3b9q_A 186 VVLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITG 250 (302)
T ss_dssp EEEECCCCCSSCCHHHHHH-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCE
T ss_pred chHHhcCCCCcchhHHHHH-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCE
Confidence 0124556777777777765 99 999999999999999 99999 9999999864 234444457788
Q ss_pred EEEEecCc--------hhHHhhcCEEEEEcCCeE
Q 037155 415 IVALLQPA--------PETYDLFDDIILISEGQI 440 (1403)
Q Consensus 415 ii~~~q~~--------~~~~~~fD~IilL~~G~i 440 (1403)
++..|-+. .......+.|..+..|+.
T Consensus 251 iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 251 LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 87776322 122234567788887754
No 131
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=5.9e-20 Score=209.08 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=96.9
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~ 992 (1403)
.+||+||||||||||+|+|+|...+ .+|+|.++|.+......++.+||++|++.+.+.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HH
Confidence 4799999999999999999996553 4799999998775545567899999999999999999999887543221 11
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 993 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
.+ .+.+.++ ....+...+ .||||||||++|||+++. +++|||||.|||+.. .+.++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1222222 233444433 699999999999999875 999999999999987 445556655
Q ss_pred CCCEEEEEecCCc
Q 037155 1073 TGRTVVCTIHQPS 1085 (1403)
Q Consensus 1073 ~g~tvi~~~H~~~ 1085 (1403)
. ++||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999743
No 132
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=5.8e-17 Score=191.06 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=68.8
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1022 VNGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1022 ~~~LSgGqrq------Rl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+..||||||| |+++|++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||++||+++ +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677788888899999999999999999999999999998877899999999964 67899999
Q ss_pred EEEe
Q 037155 1096 LLMK 1099 (1403)
Q Consensus 1096 ~ll~ 1099 (1403)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=1.3e-19 Score=206.36 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCC
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 278 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 278 (1403)
.++|+||||||||||+|+|+|...+ .+|+|.++|.++.....++.++|++|++.+++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---------------------~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~l 62 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---------------------RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------------------------CCCCCSCCEEEESCC----CCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---------------------CCCccccCCcccCcceeeeeeEEEeecCCCcCCc
Confidence 4789999999999999999998754 5799999998775544567899999999999999
Q ss_pred CHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccC
Q 037155 279 TVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMR 358 (1403)
Q Consensus 279 TVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 358 (1403)
||.||+.|+........ ...+..++ . ....+..+++
T Consensus 63 tv~d~~~~g~~~~~~~~-------------------~~~i~~~~-----------------~-----~~~~~~~~~~--- 98 (270)
T 3sop_A 63 TVIDTPGFGDQINNENC-------------------WEPIEKYI-----------------N-----EQYEKFLKEE--- 98 (270)
T ss_dssp EEECCCC--CCSBCTTC-------------------SHHHHHHH-----------------H-----HHHHHHHHHH---
T ss_pred eEEechhhhhhcccHHH-------------------HHHHHHHH-----------------H-----HHHHhhhHHh---
Confidence 99999998754321100 00011111 0 1222334433
Q ss_pred CCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
||||||||+++||+++. ++++|||+.|||+.. .+.++.+.+ . .++|+.++.
T Consensus 99 --LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K 149 (270)
T 3sop_A 99 --VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAK 149 (270)
T ss_dssp --SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETT
T ss_pred --cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEec
Confidence 99999999999999875 999999999999987 344555543 2 677776643
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.72 E-value=1.6e-19 Score=208.46 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=118.6
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hh--cceeeEeecCCC-CC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TF--ARVSGYCEQTDI-HS 970 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~ 970 (1403)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3568888999999999999999999999999996542 258999999875421 22 235899999988 88
Q ss_pred CCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 037155 971 PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFM 1048 (1403)
Q Consensus 971 ~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illL 1048 (1403)
|.+|++|++.+... + ..+ ..+++.+|+.+..+..++ .|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999987532 1 111 134566777776666544 688 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 037155 1049 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1083 (1403)
Q Consensus 1049 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1083 (1403)
| ||+|||+.... +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999998652 3444 348999999993
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.72 E-value=1.2e-21 Score=225.21 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=115.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE 977 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 977 (1403)
..+|+|||++|++|+++||+||||||||||+++|+|.. +|+| ++|++|++.+++ .|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHH
Confidence 35899999999999999999999999999999999975 3555 356777766654 36665
Q ss_pred -HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 978 -SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 978 -~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
|+.+.. +... .+++.++.+ |.+..| | ..|||||||| ||||+++|+||| ||+||
T Consensus 172 ~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 TRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp CSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred HhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 665531 1111 234555553 333333 2 3699999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcchhHHHHHHHhC
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEAV 1124 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~~ 1124 (1403)
+.++..++. .+|+++ ..+.+|++ +|+ +|++++.|+. +++..+|..+
T Consensus 226 ~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 226 VQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp STTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH----HHHHHHHHHH
Confidence 999988762 188876 45789999 887 5899988874 3455666554
No 136
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=1.5e-21 Score=215.65 Aligned_cols=154 Identities=12% Similarity=-0.006 Sum_probs=97.8
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----hhhcceeeEeecCCCCCCCCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
.-|+||||++++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46999999999999999999999999999999999652 56777 654321 113456899999876554332
Q ss_pred H-HHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEE
Q 037155 975 L-YESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTI-----AVELVANPSIIF 1047 (1403)
Q Consensus 975 v-~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~I-----A~aL~~~P~ill 1047 (1403)
. .+++.+ .....+ ...+. ..++++++..++. ..+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111110 000000 01111 2356666654321 112 2599999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
|||||+++|..+...|.+.+.+..+
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998887643
No 137
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.70 E-value=8.4e-19 Score=205.35 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=102.7
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 79999999999999999999999999999999997654 369999998642110 0112222221
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2356777777543458999999987 56789999999864
No 138
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=2.1e-18 Score=202.75 Aligned_cols=173 Identities=15% Similarity=0.218 Sum_probs=129.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-------
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV------- 260 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~------- 260 (1403)
+++|+.+++|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~---------------------~~G~V~l~g~D~~r~~a~eql~~ 206 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN---------------------EGTKVLMAAGDTFRAAASDQLEI 206 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH---------------------TTCCEEEECCCCSCHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc---------------------cCCEEEEecccccccchhHHHHH
Confidence 467889999999999999999999999999999864 4799999998764321
Q ss_pred --ccceEEEeccCCC-CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHH
Q 037155 261 --PQRTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTD 337 (1403)
Q Consensus 261 --~~~~~~yv~Q~d~-~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1403)
.++.++|++|++. ++|.+||+|++.++... + .+ .
T Consensus 207 ~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~-~---------------------~d---------------------~ 243 (359)
T 2og2_A 207 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE-G---------------------YD---------------------V 243 (359)
T ss_dssp HHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHT-T---------------------CS---------------------E
T ss_pred HHHhcCeEEEEecccccChhhhHHHHHHHHHhC-C---------------------CH---------------------H
Confidence 1246999999988 88899999999875210 0 00 0
Q ss_pred HHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 037155 338 YVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK--VLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMI 415 (1403)
Q Consensus 338 ~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvi 415 (1403)
.+++.+|+.+..+..+++ || |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.|+|
T Consensus 244 ~lldt~Gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~i 308 (359)
T 2og2_A 244 VLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGL 308 (359)
T ss_dssp EEEECCCCSSCCHHHHHH-----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEE
T ss_pred HHHHhcCCChhhhhHHHH-----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEE
Confidence 123456777776766655 99 999999999999999 99999 99999998652 334444578888
Q ss_pred EEEecCc--------hhHHhhcCEEEEEcCCe
Q 037155 416 VALLQPA--------PETYDLFDDIILISEGQ 439 (1403)
Q Consensus 416 i~~~q~~--------~~~~~~fD~IilL~~G~ 439 (1403)
+..|-+. .-.....+.|..+..|+
T Consensus 309 iiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 309 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp EEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred EEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 8776321 12223456777777775
No 139
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=3.4e-17 Score=192.82 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1024 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 4 2 7899
Q ss_pred EEEEecCcEEEEecCCC
Q 037155 1095 LLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1095 i~ll~~gG~~~~~g~~~ 1111 (1403)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 8999888763
No 140
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.69 E-value=1.1e-18 Score=204.97 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=119.1
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hh--cceeeEeecCCC-CCC
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TF--ARVSGYCEQTDI-HSP 971 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 971 (1403)
+.+|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 357778899999999999999999999999996542 258999999875421 12 346899999988 888
Q ss_pred CCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 037155 972 HVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 1049 (1403)
Q Consensus 972 ~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illLD 1049 (1403)
..|++|++.+... + ..+ ..+++.+|+.+..+..+. .|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 9999999987642 1 111 124566777776666543 688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 037155 1050 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1083 (1403)
Q Consensus 1050 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1083 (1403)
||+|||+.+.. +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 3443 348999999994
No 141
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=9.5e-17 Score=189.06 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCChhHhhHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 037155 360 GISGGQKKRVTTGEMLV---------GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 430 (1403)
.+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .|+|++. |+. + .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~t-h~~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGT-ELA-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEES-SCC-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEE-ecc-c---cCC
Confidence 59999999999999999 8999999999999999999999999998752 4555554 443 3 899
Q ss_pred EEEEEcCCeEEEecChhhH
Q 037155 431 DIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 431 ~IilL~~G~iv~~G~~~~~ 449 (1403)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
No 142
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.68 E-value=8.2e-19 Score=212.39 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=139.3
Q ss_pred cccccccc-cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc---cCCh--------hhh
Q 037155 889 KTEGVGED-RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKKQ--------ETF 956 (1403)
Q Consensus 889 ~~~~~~~~-~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~ 956 (1403)
++....++ +..+|+++ +.+.+||+++|+||||||||||+++|+|...+ ..|.|.++|. +... ...
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l 211 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGR 211 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred eccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhcccccc
Confidence 33334443 46799999 99999999999999999999999999997654 3799999997 3321 235
Q ss_pred cceeeEeecC-CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHH
Q 037155 957 ARVSGYCEQT-DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTI 1035 (1403)
Q Consensus 957 ~~~~gyv~Q~-~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~I 1035 (1403)
++.++|++|+ +...+.+|+.+++.+.+....... . ......|. ...||+|| ||++|
T Consensus 212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------~------~v~~~ld~------l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 212 ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------Q------HVLLIMDS------LTRYAMAQ-REIAL 268 (438)
T ss_dssp HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------C------EEEEEEEC------HHHHHHHH-HHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------C------CHHHHHHh------HHHHHHHH-HHHHH
Confidence 6779999995 455678899999887654321100 0 00111122 23599999 99999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1036 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1036 A~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
| +.+|++ |+|||+.+...+.+.++++.+ + |. ||++++||++ ...+|++++|. +|+++.
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~Ivl 335 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGHIVL 335 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEEEEE
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcEEEE
Confidence 9 888988 999999999999999999876 3 64 9999999987 35689999997 489998
Q ss_pred ecCC
Q 037155 1107 AGPL 1110 (1403)
Q Consensus 1107 ~g~~ 1110 (1403)
.|++
T Consensus 336 ~~~~ 339 (438)
T 2dpy_A 336 SRRL 339 (438)
T ss_dssp CHHH
T ss_pred eCCH
Confidence 8753
No 143
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.68 E-value=2.4e-20 Score=206.06 Aligned_cols=170 Identities=13% Similarity=0.079 Sum_probs=105.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---- 260 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---- 260 (1403)
.-|+|||+.+++|++++|+||||||||||+++|+|.+ . |+|.+ |.+.....
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-----------------------p-G~i~~-g~~~~~~~~~~~ 65 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-----------------------P-NYFYF-SVSCTTRKKREK 65 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-----------------------T-TTEEE-CCCEECSCCCSS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-----------------------C-CcEEE-eecccCCCCCcc
Confidence 4699999999999999999999999999999999975 1 67777 66543221
Q ss_pred ccceEEEeccCCCCCCCCC-HHHHHHhh---cccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 PQRTCAYISQHDLHHGEMT-VRETLDFS---GRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lT-VrE~l~f~---~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
.++.++|++|++..++.++ +.+++.+. ..+.+. + ...+
T Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~--------------------~------------------~~~i 107 (218)
T 1z6g_A 66 EKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT--------------------L------------------KSEY 107 (218)
T ss_dssp CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE--------------------E------------------HHHH
T ss_pred cccCCeEEECCHHHHHHhhhccchhhhhhcccccCCC--------------------c------------------HHHH
Confidence 2356899999876554432 11122111 111100 0 0011
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHH-----HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTT-----GEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsi-----a~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
+.+++... ...++ ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|.+....
T Consensus 108 ~~~l~~~~-----~~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~-- 176 (218)
T 1z6g_A 108 DKAKEQNK-----ICLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE-- 176 (218)
T ss_dssp HHHHHTTC-----EEEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--
T ss_pred HHHHhCCC-----cEEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--
Confidence 22233211 11111 3499999999999 89999999999999999999999999999998876543
Q ss_pred cEEEEEEecCchhHHhhcCEEEEEcC
Q 037155 412 VTMIVALLQPAPETYDLFDDIILISE 437 (1403)
Q Consensus 412 ~tvii~~~q~~~~~~~~fD~IilL~~ 437 (1403)
.| +.| ...+|.|+++++
T Consensus 177 ~~----~~h-----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 177 LH----EAN-----LLNFNLSIINDD 193 (218)
T ss_dssp HH----HHT-----TSCCSEEEECSS
T ss_pred HH----hhc-----ccCCCEEEECCC
Confidence 22 111 256788887754
No 144
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.68 E-value=3.5e-17 Score=203.79 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=70.6
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1022 VNGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1022 ~~~L-SgGqrqRl~IA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||+++ +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4457 999999999999999999 99999999999999999999999999987 899999999975 55679999999
Q ss_pred ecC
Q 037155 1099 KRG 1101 (1403)
Q Consensus 1099 ~~g 1101 (1403)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 753
No 145
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.67 E-value=6.7e-20 Score=200.80 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=112.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
.++++| ..+++|++++|+||||||||||+++|+|.++. ..+.+.+.+.+... ..++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---------------------i~~~~~~~~~~~~~-~~~~ 64 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---------------------LHFSVSATTRAPRP-GEVD 64 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---------------------CEECCCEESSCCCT-TCCB
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---------------------eEEcccccccCCcc-cccC
Confidence 467788 68999999999999999999999999998742 12222222222111 1245
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH----
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV---- 339 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i---- 339 (1403)
.++|++|++..++.+|+.|++.+.....+....+. ..+. ++++ .++..
T Consensus 65 ~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g----~~~~----------~~~~--------------~~~~~~~~~ 116 (207)
T 1znw_A 65 GVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG----TLAQ----------PVRA--------------AAATGVPVL 116 (207)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE----EEHH----------HHHH--------------HHHHTCCEE
T ss_pred CCeeEecCHHHHHHHHhcCCceeehhhcCchhhcC----CcHH----------HHHH--------------HHHcCCeEE
Confidence 68999999888888888888754322111000000 0000 0000 01111
Q ss_pred --HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcE
Q 037155 340 --LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGL----DSSTTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 340 --l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgL----Ds~t~~~i~~~L~~l~~~~~~t 413 (1403)
++.+|+.+..+..++ .|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+.|
T Consensus 117 ~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~t 180 (207)
T 1znw_A 117 IEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFD 180 (207)
T ss_dssp EECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSS
T ss_pred EEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCc
Confidence 233344444444443 266 899999999999999998 7789999999999987656778
Q ss_pred EEEEEecCchhHHhhcCEEEEEc
Q 037155 414 MIVALLQPAPETYDLFDDIILIS 436 (1403)
Q Consensus 414 vii~~~q~~~~~~~~fD~IilL~ 436 (1403)
++++. |...++..++|+|++|.
T Consensus 181 vi~vt-Hdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 181 KVVVN-RRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEEC-SSHHHHHHHHHHHHC--
T ss_pred EEEEC-CCHHHHHHHHHHHHHhc
Confidence 87765 55668999999999984
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.67 E-value=1.3e-17 Score=192.86 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=116.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-EEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
..+|+++++.+++|++++|+||||||||||++.|+|..... .| .+.+.+.........+.+.++.|... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 34799999999999999999999999999999999954311 24 45443333333333333333333221 2233
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 1053 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq-rqRl~IA~aL~~~P~illLDEPTs-- 1053 (1403)
+++.... + ..++..+.++++++..++. +.+. +..+|.+| +||+. |+++..+|++|++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443221 1 1112222344443322221 1111 13589998 66766 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCC--cH-------------------HHHHhcCeEEEEecC
Q 037155 1054 -G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1054 -g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~~~~~~d~i~ll~~g 1101 (1403)
+ +|. .....+++.|++++++ |+|||+++|+. +. .+...||++++|.+|
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999754 99999999995 21 466789999999864
No 147
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.67 E-value=2.6e-18 Score=199.34 Aligned_cols=128 Identities=9% Similarity=0.001 Sum_probs=95.5
Q ss_pred ceEE-EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEE
Q 037155 189 DVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAY 267 (1403)
Q Consensus 189 ~vs~-~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~y 267 (1403)
|+|. .+++|++++|+||||||||||+++|+|.+++ ..|. +.++|
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~---------------------~~G~--------------~~v~~ 125 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR---------------------WDHH--------------PRVDL 125 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT---------------------STTC--------------CCEEE
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc---------------------cCCC--------------CeEEE
Confidence 3444 3789999999999999999999999999854 2232 46899
Q ss_pred eccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc
Q 037155 268 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI 347 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 347 (1403)
|+|++.+++. |++||+.+... .+.... .+. ......++.++ ..
T Consensus 126 v~qd~~~~~~-t~~e~~~~~~~-~g~~~~-------------------~d~---------------~~~~~~L~~l~-~~ 168 (312)
T 3aez_A 126 VTTDGFLYPN-AELQRRNLMHR-KGFPES-------------------YNR---------------RALMRFVTSVK-SG 168 (312)
T ss_dssp EEGGGGBCCH-HHHHHTTCTTC-TTSGGG-------------------BCH---------------HHHHHHHHHHH-TT
T ss_pred EecCccCCcc-cHHHHHHHHHh-cCCChH-------------------HHH---------------HHHHHHHHHhC-CC
Confidence 9999999988 99999865321 111000 000 12234566666 44
Q ss_pred cccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 037155 348 CADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDS 393 (1403)
Q Consensus 348 ~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs 393 (1403)
..++.+.. +|||||||+++|++++.+|+|+++|||+..+|+
T Consensus 169 ~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 44555544 999999999999999999999999999999997
No 148
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.67 E-value=1.2e-18 Score=211.04 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=135.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCc---cCCCC
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGH---ELNEF 259 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~---~~~~~ 259 (1403)
+..+|+++ +.+.+|++++|+|||||||||||++|+|..++ .+|.|.++|+ ++.++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---------------------~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA---------------------DVIVVGLIGERGREVKDF 201 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC---------------------SEEEEEEESCCHHHHHHH
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC---------------------CeEEEEEeceecHHHHHH
Confidence 46799999 99999999999999999999999999999864 4799999998 44332
Q ss_pred --------CccceEEEeccC-CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhcc
Q 037155 260 --------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQ 330 (1403)
Q Consensus 260 --------~~~~~~~yv~Q~-d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~ 330 (1403)
..++.++|++|+ +..++.+||.+|+.+.++... .+ + .+
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~--------------~~--~----~~------------- 248 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR--------------DR--G----QH------------- 248 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH--------------TT--T----CE-------------
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH--------------hC--C----CC-------------
Confidence 135789999995 556778899999987543210 00 0 00
Q ss_pred chhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH--
Q 037155 331 ETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH-- 408 (1403)
Q Consensus 331 ~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~-- 408 (1403)
.....|. ...+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+
T Consensus 249 --------------v~~~ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~ 298 (438)
T 2dpy_A 249 --------------VLLIMDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGI 298 (438)
T ss_dssp --------------EEEEEEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCS
T ss_pred --------------HHHHHHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhcc
Confidence 0000111 23499999 999999 888887 999999999999999998765
Q ss_pred -hCCc-----EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 409 -IMDV-----TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 409 -~~~~-----tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
..|. |+++..|... ...+|++++|.+|+++..|+++++
T Consensus 299 ~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 299 HGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp TTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred CCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 2253 5555555443 567899999999999999988765
No 149
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.64 E-value=3.5e-17 Score=191.59 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=101.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
+++++|+.+++|++++|+|||||||||||++|+|.+++ .+|.|+++|.+ +...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~---------------------~~g~i~i~~~~--e~~~---- 212 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK---------------------EERIISIEDTE--EIVF---- 212 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT---------------------TSCEEEEESSC--CCCC----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC---------------------CCcEEEECCee--cccc----
Confidence 79999999999999999999999999999999999865 47999999853 1100
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
++ + ++.+ +
T Consensus 213 ---~~---~------~~~i-----------------------------------------------------------~- 220 (330)
T 2pt7_A 213 ---KH---H------KNYT-----------------------------------------------------------Q- 220 (330)
T ss_dssp ---SS---C------SSEE-----------------------------------------------------------E-
T ss_pred ---cc---c------hhEE-----------------------------------------------------------E-
Confidence 00 0 0000 0
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
.+ .| |||+||++||+||..+|+++++||||+. ++.+.|+.+.. .+.|+++++|.++ +
T Consensus 221 ------~~-----~g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~ 277 (330)
T 2pt7_A 221 ------LF-----FG--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--S 277 (330)
T ss_dssp ------EE-----CB--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--H
T ss_pred ------EE-----eC--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--H
Confidence 00 01 8999999999999999999999999982 35667776643 3447888888765 7
Q ss_pred HhhcCEEEEEcCCeE
Q 037155 426 YDLFDDIILISEGQI 440 (1403)
Q Consensus 426 ~~~fD~IilL~~G~i 440 (1403)
.+.+|++++|.+|+.
T Consensus 278 ~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 278 EEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHHHHTSG
T ss_pred HHHhhhheehhcCCc
Confidence 788999999988853
No 150
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.63 E-value=8.7e-17 Score=185.95 Aligned_cols=187 Identities=14% Similarity=0.067 Sum_probs=113.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcce-EEEECCccCCCCCc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASG-KITYCGHELNEFVP 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~I~~~G~~~~~~~~ 261 (1403)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+ .+| .|.|.+.+......
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~---------------------~~G~~v~~~~~e~~~~~~ 79 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT---------------------AMGKKVGLAMLEESVEET 79 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH---------------------TSCCCEEEEESSSCHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH---------------------HcCCeEEEEeCcCCHHHH
Confidence 45689999999999999999999999999999999998753 246 66554432211000
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.+.+.++.|... +++.+++..+ .+.. .+.....+.+++
T Consensus 80 ~~r~~~~~~~~~----~~~~~~l~~~--------------~~~~------------------------~~~~~~~~~~l~ 117 (296)
T 1cr0_A 80 AEDLIGLHNRVR----LRQSDSLKRE--------------IIEN------------------------GKFDQWFDELFG 117 (296)
T ss_dssp HHHHHHHHTTCC----GGGCHHHHHH--------------HHHH------------------------THHHHHHHHHHS
T ss_pred HHHHHHHHcCCC----hhhccccccC--------------CCCH------------------------HHHHHHHHHHhc
Confidence 111111111110 0111122110 0000 000111222332
Q ss_pred HcCCcccccccccCccCCCCChhH-hhHHHHHHHHhcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQ-KKRVTTGEMLVGAAKVLLMDEIST---G---LDS-STTFQICKFLKQMVHIMDVT 413 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGq-kqRvsia~aL~~~p~illLDEpts---g---LDs-~t~~~i~~~L~~l~~~~~~t 413 (1403)
..++. .+... ..+|.+| +||+. |+++..+|+++++||||+ + +|. ....++.+.|+++++..+.|
T Consensus 118 ~~~l~--i~~~~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~ 189 (296)
T 1cr0_A 118 NDTFH--LYDSF-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV 189 (296)
T ss_dssp SSCEE--EECCC-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE
T ss_pred cCCEE--EECCC-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 22221 11111 2388888 67777 999999999999999999 5 455 66688999999998877889
Q ss_pred EEEEEecC-ch--------------------hHHhhcCEEEEEcCCeE
Q 037155 414 MIVALLQP-AP--------------------ETYDLFDDIILISEGQI 440 (1403)
Q Consensus 414 vii~~~q~-~~--------------------~~~~~fD~IilL~~G~i 440 (1403)
+|++.|.. .. .+.+.+|+|++|++|+.
T Consensus 190 vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 190 LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp EEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 88887764 13 67789999999998874
No 151
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.62 E-value=2.8e-15 Score=176.69 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCCChhHhh------HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEE
Q 037155 359 RGISGGQKK------RVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432 (1403)
Q Consensus 359 rgLSGGqkq------Rvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~I 432 (1403)
..||||||| |+++|++++.+|++|+|||||+|||+..+..+.+.|+++... +.|++++.|+ .++.+.+|+|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCCEE
Confidence 459999999 677888889999999999999999999999999999988653 6788887766 4678999999
Q ss_pred EEEc
Q 037155 433 ILIS 436 (1403)
Q Consensus 433 ilL~ 436 (1403)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=4.8e-17 Score=182.88 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=102.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
.++++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------------------------G~~~~~-------~~ 57 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------------------------GQNEVE-------QR 57 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------------------------TGGGSC-------GG
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------------------------chhccc-------cc
Confidence 3457999999999999999999999999999999999975 222222 13
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCC-chHHHHHHHHHhhccchhHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPD-PEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
++.++|++|++ +++.+|++|++.+......... ++ .+.+. ....+
T Consensus 58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~---------------~~~~L 103 (245)
T 2jeo_A 58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDH------------------PDAFDNDL---------------MHRTL 103 (245)
T ss_dssp GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTS------------------GGGBCHHH---------------HHHHH
T ss_pred CCceEEEeCCc-CccccCHhHhhhhhccCCCCCC------------------cccccHHH---------------HHHHH
Confidence 46799999986 6778999999876433211100 00 00111 11122
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
+. |.+..+..+. .+|+||+||+.+ ++++.+|+++++|||...+|.. +.+ ..+.+++++.|.
T Consensus 104 ~~--l~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~---~~~~~i~v~th~ 164 (245)
T 2jeo_A 104 KN--IVEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD---MFHLRLFVDTDS 164 (245)
T ss_dssp HH--HHTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT---TCSEEEEEECCH
T ss_pred HH--HHCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH---hcCeEEEEECCH
Confidence 22 2344555554 499999999988 5888899999999988877753 222 236677776553
Q ss_pred CchhHH-hhcCEEEEEcCCeEEEecChhhHHHH
Q 037155 421 PAPETY-DLFDDIILISEGQIVYHGPRDNVLEF 452 (1403)
Q Consensus 421 ~~~~~~-~~fD~IilL~~G~iv~~G~~~~~~~~ 452 (1403)
.. ... .+.+++ ++|+ +.+++.+.
T Consensus 165 ~~-~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 165 DV-RLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp HH-HHHHHHHHHT---C--------CHHHHHHH
T ss_pred HH-HHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 22 332 233334 5564 55666543
No 153
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.62 E-value=6.3e-17 Score=181.71 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=104.0
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhc--CC-CCCceeEEEEEEcCccCChh--hhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYIEGDIKISGYPKKQE--TFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
.|++|++++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+||.+|+....+.+++.+....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 68999999999999999999999999 54 332 35666766543221 123446777776544444444443221
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----- 1056 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD----- 1056 (1403)
..... . .+. ... ....+.++......+..-..+|++++|||||++||
T Consensus 103 ~~~~~------~-------~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGLP------S-------EEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred ccccc------c-------ccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 10000 0 000 000 01234455555555555568999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHH---------HHhc-CeEEEEe
Q 037155 1057 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELLLMK 1099 (1403)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-d~i~ll~ 1099 (1403)
+..+..+.++++.+++.|+|||+++|+++ +. ...| |++++|+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 67777799999999888999999999986 34 4678 9999996
No 154
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=1.3e-16 Score=207.94 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=106.7
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
...+++|+++.+++|++++|+|||||||||||+++++..--. ..| +|+|+.....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~a-q~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMA-QIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHH-HHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHH-hcC------------------CccccccccchH----
Confidence 356999999999999999999999999999999994310000 000 011111000000
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEPTSG 1054 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL--~~~P~illLDEPTsg 1054 (1403)
+++++..+|+.+ .. .+++|++++++..+|++| +.+|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 000111111111 11 125888888888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1055 LDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1055 LD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
+|+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+.+ |++.+.++.
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 999988777 677777876 499999999996 46688999988875 788877654
No 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.61 E-value=1.6e-17 Score=186.84 Aligned_cols=155 Identities=9% Similarity=-0.018 Sum_probs=98.4
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999853 112222 2356789999985 6678999
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 037155 976 YESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 976 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgL 1055 (1403)
.|++.+......... +.....+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876533211111 1111112234444433 23333332 3699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 037155 1056 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1056 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1083 (1403)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2232 37899999996
No 156
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.61 E-value=1.3e-15 Score=156.91 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1022 VNGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA------~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+.|+|||++||++ ++.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 037155 1096 LLMK 1099 (1403)
Q Consensus 1096 ~ll~ 1099 (1403)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 157
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.60 E-value=1.3e-15 Score=189.58 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=67.7
Q ss_pred CCC-ChhHhhHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE
Q 037155 359 RGI-SGGQKKRVTTGEMLVGAA--KVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI 435 (1403)
Q Consensus 359 rgL-SGGqkqRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL 435 (1403)
..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|+|++.|.+ ++...+|++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 447 999999999999999999 99999999999999999999999999975 67888887764 466789999999
Q ss_pred cCC
Q 037155 436 SEG 438 (1403)
Q Consensus 436 ~~G 438 (1403)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 158
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.60 E-value=1.5e-16 Score=209.98 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=113.0
Q ss_pred cceEeeeeEEEEeC-------CeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceee-EeecCCC
Q 037155 897 RLQLLHSVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSG-YCEQTDI 968 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~ 968 (1403)
+..+++||++.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC
Confidence 35699999999987 999999999999999999999 85430 12345 9999753
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
.+||.|++.. + +|+.+..+. +...+|+|+++ +++|++++.+|+++||
T Consensus 828 ---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 4555554421 1 111111111 12347777664 9999999999999999
Q ss_pred eCCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 037155 1049 DEPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1105 (1403)
Q Consensus 1049 DEPTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~ 1105 (1403)
||||+|+|+.. ...++..|+.++++ |+++|++||+++ .....+|++.++. |++.
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEE
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEE
Confidence 99999999987 46678999999876 999999999975 3556688888874 6776
No 159
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.59 E-value=1.7e-17 Score=192.57 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=94.9
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRL 987 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~ 987 (1403)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 7899999999999999999999999965421 121 358999999999888 99999865221
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 988 SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 988 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
.+.+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222222344677888887 44444443 36999999999999999999999999999999986
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.58 E-value=1.3e-16 Score=187.49 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=121.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh----------hhhcceeeEeecC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----------ETFARVSGYCEQT 966 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~ 966 (1403)
+..+|+++ +.|.+||+++|+||||||||||+++|+|...+. .|.+.+.|.+... ..+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45699999 999999999999999999999999999976543 6888888864211 1234557777775
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 037155 967 DIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1046 (1403)
Q Consensus 967 ~~~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il 1046 (1403)
+. ...+.+.-... ...+.+.....+ .+... .. ..+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 22222211000 000011111111 01000 00 1134699999 899999 688877
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1047 FMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1047 lLDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
|+|||+.....+.++++++.+ .|. ||++++||++ ...||+++++. +|+++..+++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeCCH
Confidence 999999999999999999874 477 9999999987 35689999997 4899988764
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.58 E-value=3.4e-16 Score=177.13 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=96.5
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
.+|+++| +++|++++|+||||||||||+++|+|...+. .+|+|.++|.+. +|++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i---------~~~~~~~~~~-------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPI---------EYVFKHKKSI-------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSC---------CSCCCCSSSE--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcc---------eeecCCccee--------
Confidence 3899999 9999999999999999999999999965321 158999988753 2333321100
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
. .. +.+++.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 75 ------v------~q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------V------NQ-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------E------EE-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------e------eH-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 00 0122211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1059 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1059 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
+...+ ++. ++.|.+|++++|+.+ ..+.+|+++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 333 356999999999976 5678899888753
No 162
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=2.1e-16 Score=205.21 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=97.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+..+++|||+.+++|++++|+|||||||||||+++++...... . |...... ...++++ +.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~------g~~vpa~--~~~i~~~---d~i~~~i--- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-I------GSYVPAE--EATIGIV---DGIFTRM--- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-H------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-c------Cccccch--hhhhhHH---HHHHHhC---
Confidence 4679999999999999999999999999999999975311000 0 1000000 0011111 1111111
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
++.+.... +...+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 724 -------------------------------g~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 724 -------------------------------GAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred -------------------------------ChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11111111 123689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCe
Q 037155 1057 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1057 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
+.....+. .+++.+++ .|+|||++||+++ +.+.+|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888887 77777765 5999999999975 4455554
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=5.4e-16 Score=171.77 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=95.0
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC--CCCCc---eeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~---~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
+-+++|++++|+||||||||||+++|+| ..+++ ...+.+.+++..... .+.+++++|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 3689999999999999999999999998 33211 123577777754210 1123444443322221 2222221
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCC
Q 037155 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1052 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG-qrqRl~IA~aL~~-------~P~illLDEPT 1052 (1403)
+. ...+.+ +++.+..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3344556666665 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCeEEEEecC
Q 037155 1053 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1053 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~i~ll~~g 1101 (1403)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777877764 49999999995431 256788999999863
No 164
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=8.8e-15 Score=182.49 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=114.7
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEecc
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQ 270 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q 270 (1403)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.|++|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----------------------~G~--------------~vi~~~~e 318 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----------------------NKE--------------RAILFAYE 318 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----------------------TTC--------------CEEEEESS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----------------------CCC--------------CEEEEEEe
Confidence 568999999999999999999999999998643 232 12344555
Q ss_pred CCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccccc
Q 037155 271 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICAD 350 (1403)
Q Consensus 271 ~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 350 (1403)
++. .+++++.. + .+. +. +. +...|+....+
T Consensus 319 e~~----~~l~~~~~---~--------------------~g~----~~------------------~~-~~~~g~~~~~~ 348 (525)
T 1tf7_A 319 ESR----AQLLRNAY---S--------------------WGM----DF------------------EE-MERQNLLKIVC 348 (525)
T ss_dssp SCH----HHHHHHHH---T--------------------TSC----CH------------------HH-HHHTTSEEECC
T ss_pred CCH----HHHHHHHH---H--------------------cCC----CH------------------HH-HHhCCCEEEEE
Confidence 531 02222211 0 010 00 01 12345655555
Q ss_pred ccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEEEecCc---
Q 037155 351 TMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSS-----TTFQICKFLKQMVHIMDVTMIVALLQPA--- 422 (1403)
Q Consensus 351 t~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~-----t~~~i~~~L~~l~~~~~~tvii~~~q~~--- 422 (1403)
.... .|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.+ .|.|++++.|...
T Consensus 349 ~~p~-----~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~ 421 (525)
T 1tf7_A 349 AYPE-----SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMG 421 (525)
T ss_dssp CCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSC
T ss_pred eccc-----cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccC
Confidence 5554 49999999999999999999999999 99999999 99999999988765 5889999888762
Q ss_pred ------hhHHhhcCEEEEEcCCe
Q 037155 423 ------PETYDLFDDIILISEGQ 439 (1403)
Q Consensus 423 ------~~~~~~fD~IilL~~G~ 439 (1403)
..+..++|+|++|.+|+
T Consensus 422 ~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 422 AHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCSSCSSCCTTTCSEEEEEEEEE
T ss_pred cccccCcccceeeeEEEEEEEEE
Confidence 45677899999999886
No 165
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.54 E-value=5.8e-15 Score=192.34 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCChhHhhHHHHHHHH--hcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE
Q 037155 359 RGISGGQKKRVTTGEML--VGAAKVLLMDEISTGLDSSTTFQI-CKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI 435 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL--~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL 435 (1403)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ +..++.+.+..+.|++++.|. .+..+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999888888888 899999999999999999999888 566677765458888888776 4677899999999
Q ss_pred cCCeEEEecChhhH
Q 037155 436 SEGQIVYHGPRDNV 449 (1403)
Q Consensus 436 ~~G~iv~~G~~~~~ 449 (1403)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
No 166
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.52 E-value=7.4e-16 Score=181.12 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=120.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC---
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF--- 259 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~--- 259 (1403)
++.+|+++ +.|.+|+.++|+||||||||||+++|+|..++ ..|.|.++|++..+.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~---------------------~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA---------------------DIIVLALIGERGREVNEF 115 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC---------------------SEEEEEEESCCHHHHHHH
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC---------------------CEEEEEEecccHHHHHHH
Confidence 45799999 99999999999999999999999999999864 478998888642110
Q ss_pred -------CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccch
Q 037155 260 -------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQET 332 (1403)
Q Consensus 260 -------~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~ 332 (1403)
..++.+.++.|.+. ...+.+.-. ..+...
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~----------------------------------~~~~~~----- 151 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-----PALERMKAA----------------------------------FTATTI----- 151 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-----CHHHHHHHH----------------------------------HHHHHH-----
T ss_pred HHhhhhhhhhceEEEEECCCC-----CHHHHHHHH----------------------------------HHHHHH-----
Confidence 12355677776532 222222110 000000
Q ss_pred hHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCC
Q 037155 333 SLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH-IMD 411 (1403)
Q Consensus 333 ~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~-~~~ 411 (1403)
.++ ....| .|..+--+....+|+|| |||++| +++|++ |+|||+....++.+.++++.+ ..|
T Consensus 152 ---ae~-~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~G 213 (347)
T 2obl_A 152 ---AEY-FRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKG 213 (347)
T ss_dssp ---HHH-HHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSS
T ss_pred ---HHH-HHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCC
Confidence 000 00001 11000001123499999 899999 578876 999999999999999998764 335
Q ss_pred c-----EEEEEEecCchhHHhhcCEEEEEcCCeEEEecChhhH
Q 037155 412 V-----TMIVALLQPAPETYDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 412 ~-----tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
. |+++..|... ...+|++++|.+|+++..|+.+++
T Consensus 214 siT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 214 SITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp EEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 4 4555444333 467999999999999999987765
No 167
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=2.2e-15 Score=193.15 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=96.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+..+++|+|+. |++++|+|||||||||||++|+|..... ..|.+. + . .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSFV----P--A--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB----S--S--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCcee----e--h--hccceeeHHH---hhccCCHH
Confidence 35699999998 9999999999999999999999953100 013211 1 1 1345788776 34455555
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 1051 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL--~~~P~illLDEP--- 1051 (1403)
|++. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1052 TSGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1052 TsgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
|++||..+. ..+.+.|++ .|+|+|++||+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 567777776 4899999999854
No 168
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=1.5e-16 Score=184.16 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=85.3
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC-CCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV 973 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 973 (1403)
++++.+++++++.| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 44567999999998 99999999999999999996 33 2356 777776543322235579999988888889
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1053 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs 1053 (1403)
|+.|+..++..... .+.....++.+. +..+..+ +++|||||||+.+||+++ ++++||||+
T Consensus 79 tv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 79 TVVDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp EEEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred chhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 99998877543210 000011112221 1223332 369999999999988875 999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 037155 1054 -GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1085 (1403)
Q Consensus 1054 -gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1085 (1403)
|||+... +.++++.+. +.++|++.||+.
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 555665543 789999999863
No 169
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.50 E-value=2e-15 Score=199.18 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccC
Q 037155 184 VQILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL 256 (1403)
Q Consensus 184 ~~iL~~vs~~i~~-------Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~ 256 (1403)
..+++|+++.+++ |++++|+|||||||||||+++ |.+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------------------- 814 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------------------- 814 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---------------------------------
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---------------------------------
Confidence 4699999999987 999999999999999999999 87631
Q ss_pred CCCCccceEE-EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHH
Q 037155 257 NEFVPQRTCA-YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLV 335 (1403)
Q Consensus 257 ~~~~~~~~~~-yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (1403)
...+| ||+|+.. .+||.|+|.. +.
T Consensus 815 -----~aqiG~~Vpq~~~---~l~v~d~I~~--ri--------------------------------------------- 839 (1022)
T 2o8b_B 815 -----MAQMGCYVPAEVC---RLTPIDRVFT--RL--------------------------------------------- 839 (1022)
T ss_dssp -----HHTTTCCEESSEE---EECCCSBEEE--EC---------------------------------------------
T ss_pred -----HhheeEEeccCcC---CCCHHHHHHH--Hc---------------------------------------------
Confidence 01233 8888753 4466555421 10
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEE
Q 037155 336 TDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTT-FQICKFLKQMVHIMDVTM 414 (1403)
Q Consensus 336 ~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~-~~i~~~L~~l~~~~~~tv 414 (1403)
|+.+..+. | ...+|+|++ ++++|++++++|++++||||++|+|+... ..++..|+.+.+..+.++
T Consensus 840 --------g~~d~~~~--~---~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~v 905 (1022)
T 2o8b_B 840 --------GASDRIMS--G---ESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRT 905 (1022)
T ss_dssp --------C--------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred --------CCHHHHhh--c---hhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEE
Confidence 11110000 0 123677666 49999999999999999999999999885 446788888876557788
Q ss_pred EEEEecCchhHHhhcCEEEEEcCCeEE--EecChhh
Q 037155 415 IVALLQPAPETYDLFDDIILISEGQIV--YHGPRDN 448 (1403)
Q Consensus 415 ii~~~q~~~~~~~~fD~IilL~~G~iv--~~G~~~~ 448 (1403)
+++.|.+ ..+...+|++.++ +|++. +.|+.++
T Consensus 906 l~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 906 LFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp EEECCCH-HHHHHTSSCSSEE-EEEEEEC-------
T ss_pred EEEeCCH-HHHHHhCCcceee-cCeEEEEEecCccc
Confidence 8876654 4666778998886 58887 5565543
No 170
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.50 E-value=5.1e-17 Score=178.09 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=111.7
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCC--CCCCHHHHHHHHHhh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHS--PHVTLYESLLYSAWL 985 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l 985 (1403)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. +.+|+.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999986431 378999998776 5689988866532
Q ss_pred hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 037155 986 RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1054 (1403)
Q Consensus 986 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq----rqRl~IA~aL~~~P~illLDEPTsg------- 1054 (1403)
..+... ..+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123366777888877655543 23689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 037155 1055 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1084 (1403)
Q Consensus 1055 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1084 (1403)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999875 45699999999974
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.50 E-value=5.9e-15 Score=163.41 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccC
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQH 271 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 271 (1403)
+-+++|++++|+||||||||||+++|+|...+... ......|.+.+++... ...+.++++.|+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~--------------~g~~~~~~i~~~~~~~---~~~~~i~~~~~~ 82 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE--------------EGGLNGSVIWIDTENT---FRPERIREIAQN 82 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG--------------GTCCSCEEEEEESSSC---CCHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccc--------------cCCCCCEEEEEECCCC---CCHHHHHHHHHH
Confidence 57999999999999999999999999996543100 0001235667766431 011234444554
Q ss_pred CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccc
Q 037155 272 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351 (1403)
Q Consensus 272 d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 351 (1403)
..+.+. ||.||+.+..
T Consensus 83 ~~~~~~-~~~~~~~~~~--------------------------------------------------------------- 98 (231)
T 4a74_A 83 RGLDPD-EVLKHIYVAR--------------------------------------------------------------- 98 (231)
T ss_dssp TTSCHH-HHHHTEEEEE---------------------------------------------------------------
T ss_pred cCCCHH-HHhhcEEEEe---------------------------------------------------------------
Confidence 433333 4455443321
Q ss_pred cccCccCCCCChh-HhhHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCC
Q 037155 352 MVGDEMRRGISGG-QKKRVTTGEMLV-------GAAKVLLMDEISTGLDSST------------TFQICKFLKQMVHIMD 411 (1403)
Q Consensus 352 ~vg~~~~rgLSGG-qkqRvsia~aL~-------~~p~illLDEptsgLDs~t------------~~~i~~~L~~l~~~~~ 411 (1403)
..+++ +++.+..+++++ .+|+++++||||++||+.. ..++++.|+++++..+
T Consensus 99 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g 170 (231)
T 4a74_A 99 --------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD 170 (231)
T ss_dssp --------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC
Confidence 12222 222233344443 3899999999999999842 2368888888877778
Q ss_pred cEEEEEEecCc---hhHHhhcCEEEEEcCC
Q 037155 412 VTMIVALLQPA---PETYDLFDDIILISEG 438 (1403)
Q Consensus 412 ~tvii~~~q~~---~~~~~~fD~IilL~~G 438 (1403)
.|+|++.|... ..+...+|.+++|++|
T Consensus 171 ~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 171 IAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CEEEEEEECC---------CCSEEEEEEEC
T ss_pred CeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 88888776332 1366789999999875
No 172
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.49 E-value=6.1e-14 Score=144.48 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=69.1
Q ss_pred CCCCChhHhhHHHHH------HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 358 RRGISGGQKKRVTTG------EMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 358 ~rgLSGGqkqRvsia------~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
...||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+|++.|++ +..+.+|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhCCE
Confidence 345999999999876 8999999999999999999999999999999988653 78888887775 57789999
Q ss_pred EEEE--cCCeE
Q 037155 432 IILI--SEGQI 440 (1403)
Q Consensus 432 IilL--~~G~i 440 (1403)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.48 E-value=1e-14 Score=165.02 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=95.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccce
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRT 264 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~ 264 (1403)
++|+|+| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--------------------~~G~I~~~g~~i~------- 65 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--------------------KSYHIITIEDPIE------- 65 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--------------------CCCEEEEEESSCC-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--------------------CCCEEEEcCCcce-------
Confidence 4899999 9999999999999999999999999988542 2799999886542
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
|+.|+... +. . + +.+|
T Consensus 66 --~~~~~~~~-----------~v--~---------------------------------------q----------~~~g 81 (261)
T 2eyu_A 66 --YVFKHKKS-----------IV--N---------------------------------------Q----------REVG 81 (261)
T ss_dssp --SCCCCSSS-----------EE--E---------------------------------------E----------EEBT
T ss_pred --eecCCcce-----------ee--e---------------------------------------H----------HHhC
Confidence 22222100 00 0 0 0011
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
++. ..-|++||++|..+|+++++|||| |+.+...+++ . +. .|.++++++|...
T Consensus 82 l~~-----------------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~t~H~~~-- 134 (261)
T 2eyu_A 82 EDT-----------------KSFADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFGTLHTNT-- 134 (261)
T ss_dssp TTB-----------------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEEEECCSS--
T ss_pred CCH-----------------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEEEeCcch--
Confidence 211 112899999999999999999999 9888655443 2 23 4788888877654
Q ss_pred HHhhcCEEEEEcC
Q 037155 425 TYDLFDDIILISE 437 (1403)
Q Consensus 425 ~~~~fD~IilL~~ 437 (1403)
....+|+++.|..
T Consensus 135 ~~~~~dri~~l~~ 147 (261)
T 2eyu_A 135 AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhhcC
Confidence 6778899988754
No 174
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.47 E-value=1.2e-14 Score=187.57 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=103.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHH
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+..+++|+|+. ++|++++|+|||||||||||++|+|....+. .|...... ...++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 35699999999 9999999999999999999999998421000 12111111 134566655 34444554
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1056 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD 1056 (1403)
|++... .+.+|+|+++ +..+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 443211 1136766654 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 037155 1057 ARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYA 1107 (1403)
Q Consensus 1057 ~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~ 1107 (1403)
+.....+ +..++.+.+ .|+++|++||+++ +.+.+|++..+.+ |++.+.
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 9776664 788888887 4999999999975 4567777655553 565554
No 175
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.47 E-value=1e-15 Score=167.60 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=106.2
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCC
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDL 273 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 273 (1403)
.++|++++|+||||||||||+++|+|.+. . .++|++|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~------------------------~----------------~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG------------------------E----------------RVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG------------------------G----------------GEEEEEGGGC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC------------------------C----------------CeEEEecCcc
Confidence 57899999999999999999999999762 0 4789999987
Q ss_pred CC--CCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccc
Q 037155 274 HH--GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADT 351 (1403)
Q Consensus 274 ~~--~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 351 (1403)
++ ..+|+++++.+.....+ . .+ .......++.+++.+..+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~---------~-------------~~---------------~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 43 YKDLGHLPLEERLRVNYDHPD---------A-------------FD---------------LALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp BCCCTTSCHHHHHHSCTTSGG---------G-------------BC---------------HHHHHHHHHHHHTTCCEEE
T ss_pred ccCcccccHHHhcCCCCCChh---------h-------------hh---------------HHHHHHHHHHHHcCCCcCC
Confidence 76 56799998766321000 0 00 0112334566666665555
Q ss_pred cccCccCCCCChhH----hhHHHHHHHHhcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 037155 352 MVGDEMRRGISGGQ----KKRVTTGEMLVGAAKVLLMDEISTG-------LDSSTTFQICKFLKQMVHIMDVTMIVALLQ 420 (1403)
Q Consensus 352 ~vg~~~~rgLSGGq----kqRvsia~aL~~~p~illLDEptsg-------LDs~t~~~i~~~L~~l~~~~~~tvii~~~q 420 (1403)
.+.+ +|+|| +||+++|++++.+|+++++||||++ ||+....++.+.+++..+..|.|++.+.|+
T Consensus 86 ~~~~-----~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 86 PVYD-----FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CCEE-----TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred Cccc-----CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4433 88886 4789999999999999999999999 999999999999887654457777665554
No 176
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.47 E-value=3.1e-15 Score=172.74 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hh--cceeeEeecCCCCCCCCCHHHHHH
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TF--ARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
+|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999996543 258899999875321 12 245899999998888899999987
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 037155 981 YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1060 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~ 1060 (1403)
+... +. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6521 10 00 012223333332222 2455669999999999999994333 3444444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCC
Q 037155 1061 AIVMRTVRNTVDT-GRTVVCTIHQP 1084 (1403)
Q Consensus 1061 ~~i~~~l~~~~~~-g~tvi~~~H~~ 1084 (1403)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4556666666543 89999999974
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.46 E-value=9.4e-15 Score=172.43 Aligned_cols=170 Identities=20% Similarity=0.211 Sum_probs=103.8
Q ss_pred eeeece-EEEEeCCeEEEEEcCCCCChHHHHHHHhccc--cccchhhcccchhhhhhhccCCCcceE-EEECCccCCCCC
Q 037155 185 QILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--HENLRVRFQSNKFLIIRIWKTEQASGK-ITYCGHELNEFV 260 (1403)
Q Consensus 185 ~iL~~v-s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~~~G~~~~~~~ 260 (1403)
+.|+++ +|.+++|++++|+||||||||||++.|+|.. ++... ...|+ |.+++.+. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~G-----------------g~~G~vi~i~~e~~--~- 177 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-----------------GLNGSVIWIDTENT--F- 177 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----------------SCSCEEEEEESSSC--C-
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcC-----------------CCCCeEEEEeCCCC--C-
Confidence 456665 6899999999999999999999999999987 32100 01377 78887543 1
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 261 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 261 ~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
.++.++++.|...+++. ++.||+.+....
T Consensus 178 ~~~~i~~i~q~~~~~~~-~v~~ni~~~~~~-------------------------------------------------- 206 (349)
T 1pzn_A 178 RPERIREIAQNRGLDPD-EVLKHIYVARAF-------------------------------------------------- 206 (349)
T ss_dssp CHHHHHHHHHTTTCCHH-HHGGGEEEEECC--------------------------------------------------
T ss_pred CHHHHHHHHHHcCCCHH-HHhhCEEEEecC--------------------------------------------------
Confidence 23456677776554443 555655442110
Q ss_pred HHcCCcccccccccCccCCCCChhHhhHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHH
Q 037155 341 KLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV-------GAAKVLLMDEISTGLDSST------------TFQICK 401 (1403)
Q Consensus 341 ~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~-------~~p~illLDEptsgLDs~t------------~~~i~~ 401 (1403)
-|++|+|++.++++++ .+|+++++||||++||+.. ..++++
T Consensus 207 --------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~ 266 (349)
T 1pzn_A 207 --------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 266 (349)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH
Confidence 0233344444444443 7899999999999999852 356677
Q ss_pred HHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCCeEEEecCh
Q 037155 402 FLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEGQIVYHGPR 446 (1403)
Q Consensus 402 ~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G~iv~~G~~ 446 (1403)
.|+++++..+.|+|++.|... +.-..+++......|+++.++..
T Consensus 267 ~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 267 DLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp HHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred HHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 778887777888888766433 33334556667777877766553
No 178
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=5.9e-15 Score=170.46 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---------ccceEE
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---------PQRTCA 266 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~ 266 (1403)
+|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+..... .++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~---------------------~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~ 159 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN---------------------LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 159 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT---------------------TTCCEEEECCCCSSTTTTHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---------------------cCCEEEEEeecCCChhHHHHHHHHHHhcCce
Confidence 6999999999999999999999999865 4799999998764322 124589
Q ss_pred EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCc
Q 037155 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD 346 (1403)
Q Consensus 267 yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 346 (1403)
|++|++..+|.+||+|++.++.. .+ .+ ..+++..|+.
T Consensus 160 ~v~q~~~~~p~~~v~~~v~~~~~-~~---------------------~d---------------------~~llDt~G~~ 196 (304)
T 1rj9_A 160 VIQGPEGTDSAALAYDAVQAMKA-RG---------------------YD---------------------LLFVDTAGRL 196 (304)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHH-HT---------------------CS---------------------EEEECCCCCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh-CC---------------------CC---------------------EEEecCCCCC
Confidence 99999988888899999976411 00 00 0011222332
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+..+.. ++..+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.|+|+..|.+
T Consensus 197 ~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 197 HTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp TTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred CchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 222211 455568999999999999995555 56666666677777777665578888877743
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.44 E-value=1.5e-14 Score=162.28 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=52.2
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH---------Hhh
Q 037155 363 GGQKKRVTTGEMLVGAAKVLLMDEISTGLD-----SSTTFQICKFLKQMVHIMDVTMIVALLQPAPET---------YDL 428 (1403)
Q Consensus 363 GGqkqRvsia~aL~~~p~illLDEptsgLD-----s~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~---------~~~ 428 (1403)
-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.+ .|.|++++.|... +. ..+
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYGIEEF 197 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGGG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC-CCcccccccChhhE
Confidence 344444444444457999999999999997 6666668888888765 5889888877654 44 578
Q ss_pred c-CEEEEEc
Q 037155 429 F-DDIILIS 436 (1403)
Q Consensus 429 f-D~IilL~ 436 (1403)
+ |+|++|+
T Consensus 198 ~aD~vi~l~ 206 (251)
T 2ehv_A 198 IARGVIVLD 206 (251)
T ss_dssp GCSEEEEEE
T ss_pred eeeEEEEEe
Confidence 8 9999995
No 180
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.44 E-value=1.3e-13 Score=157.85 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=101.7
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 489999999999999999999999997432 2333 23433211 2346777665421 01111111 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1061 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTs--gLD~~~---~~ 1061 (1403)
.+... ...+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 1245678888887765543 346999998865 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 037155 1062 IVMRTVRNTV-DTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1062 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1085 (1403)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888999886 45999999999864
No 181
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.44 E-value=2.7e-13 Score=165.04 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=64.7
Q ss_pred CCChhHhhHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEE
Q 037155 360 GISGGQKKRVTTGEMLV----GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILI 435 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL 435 (1403)
.||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .+.++|++.|+ .+..+.+|+++.|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEEE
Confidence 49999999999999999 68999999999999999999999999998753 35677777665 4678899999988
Q ss_pred c
Q 037155 436 S 436 (1403)
Q Consensus 436 ~ 436 (1403)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.43 E-value=1.4e-15 Score=163.66 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccceEEEeccCCCCC
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRTCAYISQHDLHH 275 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~ 275 (1403)
|++++|+||||||||||+++|+|.++ .+| |.++|....+.. .++.++|++|+. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~----------------------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~ 55 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK----------------------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--S 55 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH----------------------HTT-CCCEEEECCEEETTSSEEEEEEEET--T
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc----------------------cCC-EEEcCEecchhHhhhceEEEEEEec--c
Confidence 78999999999999999999999874 257 888886654322 357899999974 1
Q ss_pred CCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcc-ccccccc
Q 037155 276 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDI-CADTMVG 354 (1403)
Q Consensus 276 ~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg 354 (1403)
+. ++++ ++... +.+. ..+..+|
T Consensus 56 g~---~~~l---~~~~~---------------------------------------------------~~~~~~~~~~v~ 78 (189)
T 2i3b_A 56 GT---RGPL---SRVGL---------------------------------------------------EPPPGKRECRVG 78 (189)
T ss_dssp SC---EEEE---EECCC---------------------------------------------------CCCSSSCCEESS
T ss_pred cc---eehh---hcccc---------------------------------------------------cCCccccccccc
Confidence 11 1111 11100 0000 0112444
Q ss_pred CccCCCCChhHhhHHH-HHH---HHhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEecCchhH
Q 037155 355 DEMRRGISGGQKKRVT-TGE---MLVGAAKVLLMDE--ISTGLDSSTTFQICKFLKQMVHIMDVTMIV---ALLQPAPET 425 (1403)
Q Consensus 355 ~~~~rgLSGGqkqRvs-ia~---aL~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii---~~~q~~~~~ 425 (1403)
. .+..+|||||+++. +++ |+..+|++++||| |+..+|......+.+.++ . ..++|+ ++.|..+
T Consensus 79 ~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~-- 150 (189)
T 2i3b_A 79 Q-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP-- 150 (189)
T ss_dssp S-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--
T ss_pred e-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--
Confidence 2 33459999999984 444 5889999999999 898899876655555554 2 344553 3323332
Q ss_pred HhhcCEEEEEcCCeEEEec
Q 037155 426 YDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 426 ~~~fD~IilL~~G~iv~~G 444 (1403)
..+.|+|..+.+|+|+.-.
T Consensus 151 ~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 151 LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CTTHHHHHTTCCSEEEECC
T ss_pred hHHHHHHeecCCcEEEEeC
Confidence 3567888888899988643
No 183
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.43 E-value=8.9e-15 Score=172.63 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=99.4
Q ss_pred eeee-EEEEeCCeEEEEEccCCCchHHHHHhhcCCC--CC--ceeEEE-EEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 037155 901 LHSV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYIEGD-IKISGYPKKQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 901 L~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
|+++ ++.+++|++++|+||||||||||++.|++.. .+ |...|. +++++.... .++.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 4443 4789999999999999999999999999853 21 111256 888886531 12335566665433221 2
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEE
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-------ANPSIIF 1047 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~-------~~P~ill 1047 (1403)
+.||+.+. +. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222111 00 01567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 037155 1048 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1048 LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
+||||+++|+.. ...+++.|+++++ .|+|||+++|... +....++...... +|+++.+++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 999999999852 3566667777764 4899999999864 3333334444443 455544433
No 184
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.43 E-value=1.1e-13 Score=179.92 Aligned_cols=71 Identities=10% Similarity=0.154 Sum_probs=58.6
Q ss_pred CCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecCchhHHhhcCEE
Q 037155 359 RGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQIC-KFLKQMVHIMDVTMIVALLQPAPETYDLFDDI 432 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~-~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~I 432 (1403)
..+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+.|++++.|.+ +..+++|+.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 3489999999999998 8999999999999999999999987 677777655688888887764 455666653
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.43 E-value=3.3e-14 Score=157.38 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=105.9
Q ss_pred eEeeeeEE-EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcc---eeeEeecCCCCCCCCC
Q 037155 899 QLLHSVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFAR---VSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 899 ~iL~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~Q~~~~~~~lT 974 (1403)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..++.+|..... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 35777774 7999999999999999999999999974321 1244544443322211111 122222211000 000
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1052 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~--illLDEPT 1052 (1403)
+ ++.....++ ...+ ....|.++.++...+.....+|+ ++++||||
T Consensus 87 ~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 I------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp E------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred E------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 000000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCeEEEEec
Q 037155 1053 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1053 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~i~ll~~ 1100 (1403)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...||++++|.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99989999999999864 5899999999972 136778999999975
No 186
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.42 E-value=4.8e-14 Score=180.73 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=94.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+++|+|+. |++++|+|||||||||||++|+|..... ..|.+. . ..+.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~--------------------~~G~~v------p--a~~~ 614 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA--------------------QVGSFV------P--AEEA 614 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH--------------------TTTCCB------S--SSEE
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc--------------------ccCcee------e--hhcc
Confidence 5689999999 9999999999999999999999975310 234321 0 0124
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.+++++| +++.+|+.||+.
T Consensus 615 ~i~~v~~---i~~~~~~~d~l~---------------------------------------------------------- 633 (765)
T 1ewq_A 615 HLPLFDG---IYTRIGASDDLA---------------------------------------------------------- 633 (765)
T ss_dssp EECCCSE---EEEECCC---------------------------------------------------------------
T ss_pred ceeeHHH---hhccCCHHHHHH----------------------------------------------------------
Confidence 5677766 344455555542
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEE
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEML--VGAAKVLLMDEI---STGLDSSTT-FQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL--~~~p~illLDEp---tsgLDs~t~-~~i~~~L~~l~~~~~~tvii~ 417 (1403)
.|+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+.+.|++ .+.|++++
T Consensus 634 ---------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~ 694 (765)
T 1ewq_A 634 ---------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFA 694 (765)
T ss_dssp ----------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEE
T ss_pred ---------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEE
Confidence 24899999999999999 999999999999 999998875 568888765 36788888
Q ss_pred EecC
Q 037155 418 LLQP 421 (1403)
Q Consensus 418 ~~q~ 421 (1403)
.|.+
T Consensus 695 TH~~ 698 (765)
T 1ewq_A 695 THYF 698 (765)
T ss_dssp CCCH
T ss_pred eCCH
Confidence 7754
No 187
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.41 E-value=9.8e-16 Score=164.82 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=100.1
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~ 989 (1403)
|++++|+||||||||||+++|+|... . +| |.++|....+ ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999653 2 46 7777765532 23567789999974 1111 111 11100
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHH
Q 037155 990 DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1063 (1403)
Q Consensus 990 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl-~IA~---aL~~~P~illLDE--PTsgLD~~~~~~i 1063 (1403)
..+ ....+..+|..+ ..+|+|||+++ ++++ |+..+|+|||||| ||..+|......+
T Consensus 67 ~~~-----------------~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 67 EPP-----------------PGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp CCC-----------------SSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred cCC-----------------ccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 000 000111333322 25999999988 4454 5789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 037155 1064 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELLLMKRGGRVIYAGPL 1110 (1403)
Q Consensus 1064 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~ 1110 (1403)
.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+-
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred HHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 54443 4445553 2388641 2346665554 5788776553
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.40 E-value=4.7e-15 Score=171.60 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=77.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc-ccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
++.+++|+++.| +|+||||||||||++.|+|. ..+ .+| |.++|.+......
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---------------------~~g-i~~~g~~~~~t~~ 61 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---------------------ERV-ISGAAEKIERTVQ 61 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-------------------------------------------
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---------------------CCC-cccCCcccCCcce
Confidence 457999999998 99999999999999999996 432 467 7777766543222
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
.+.++|+.|++.....+||.||..++.... ..+.. ....+++.
T Consensus 62 ~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-------------~~e~~-----------------------~~l~~~l~- 104 (301)
T 2qnr_A 62 IEASTVEIEERGVKLRLTVVDTPGYGDAIN-------------CRDCF-----------------------KTIISYID- 104 (301)
T ss_dssp ---CEEEEC---CCEEEEEEEEC------------------------C-----------------------TTHHHHHH-
T ss_pred EeeEEEEecCCCcccCcchhhhhhhhhhcC-------------cHHHH-----------------------HHHHHHHH-
Confidence 356899999888888889999987742210 00000 00111111
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTG-LDSSTTFQICKFLKQMVHIMDVTMIVA 417 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~ 417 (1403)
+..+..+ +++|||||||+.+||+++ ++++||||++ ||+... +.++++....+.++|+.
T Consensus 105 -----~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 105 -----EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp -----HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEEC
T ss_pred -----HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEE
Confidence 1122233 349999999999998884 9999999985 999873 55555543334444443
No 189
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.40 E-value=7.6e-13 Score=151.54 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=101.0
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCC
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHD 272 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 272 (1403)
-+++|++++|+||||||||||++.+++.+. .|.+ +.|.... ....+.|+..++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----------------------~g~~-~~g~~~~---~~~~v~~~~~e~ 78 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----------------------GGPD-LLEVGEL---PTGPVIYLPAED 78 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------------------TCCC-TTCCCCC---CCCCEEEEESSS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----------------------cCCC-cCCCccC---CCccEEEEECCC
Confidence 589999999999999999999999998652 3444 2343221 134678887664
Q ss_pred CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccccccc
Q 037155 273 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM 352 (1403)
Q Consensus 273 ~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 352 (1403)
... .+.+.+.- + +...+ ....+.+++.+++.+..+..
T Consensus 79 ~~~---~~~~r~~~----------------~-------g~~~~-----------------~~~~~~~~~~l~l~~~~~~~ 115 (279)
T 1nlf_A 79 PPT---AIHHRLHA----------------L-------GAHLS-----------------AEERQAVADGLLIQPLIGSL 115 (279)
T ss_dssp CHH---HHHHHHHH----------------H-------HTTSC-----------------HHHHHHHHHHEEECCCTTSC
T ss_pred CHH---HHHHHHHH----------------H-------HhhcC-----------------hhhhhhccCceEEeecCCCC
Confidence 210 11111100 0 00000 01123456777777766555
Q ss_pred ccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 353 VGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEIST--GLDSSTT---FQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 353 vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEpts--gLDs~t~---~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
+. .+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|++.|..
T Consensus 116 ~~-----~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 116 PN-----IMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp CC-----TTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cc-----cCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 54 4999998876 67888999999999999 9998554 7888999998876788888876654
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.40 E-value=7.3e-13 Score=146.56 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=64.7
Q ss_pred CChhHhhHHHHHHHHhcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCc-------hhHHhhc
Q 037155 361 ISGGQKKRVTTGEMLVGAAK--VLLMDEISTGL--DSSTTFQICKFLKQMVHIMDVTMIVALLQPA-------PETYDLF 429 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~--illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~-------~~~~~~f 429 (1403)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|++++.|... +.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 58999988888877778999 99999999888 9999999999999998777888888776652 4578899
Q ss_pred CEEEEEcCC
Q 037155 430 DDIILISEG 438 (1403)
Q Consensus 430 D~IilL~~G 438 (1403)
|+|++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999764
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.39 E-value=1e-13 Score=163.32 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=88.3
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
+|+++ ...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~-------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD-------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT--------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc--------
Confidence 45555 57899999999999999999999999964321 12444433332211 11222334444322111
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.++..+ +||++|..+|++|++|||| |.++
T Consensus 182 --------------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 182 --------------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp --------------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 122222 8999999999999999999 6665
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 037155 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1100 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~ 1100 (1403)
.. .+.+++.+|+|||+|+|+.+. . +.+||++.|..
T Consensus 211 ~~----~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~ 245 (356)
T 3jvv_A 211 IR----LALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFP 245 (356)
T ss_dssp HH----HHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSC
T ss_pred HH----HHHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcC
Confidence 44 444456679999999999873 3 78999988853
No 192
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.38 E-value=1.6e-13 Score=176.93 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=103.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+++|+|+. ++|++++|+|||||||||||++|+|..... ..|. .+.. ...
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--------------------q~G~------~vpa--~~~ 645 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--------------------YIGS------YVPA--QKV 645 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--------------------TTTC------CBSS--SEE
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--------------------hcCc------ccch--hcc
Confidence 4689999999 999999999999999999999999974211 1121 1100 012
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLL 343 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 343 (1403)
.++++.| +++.+++.|++..+
T Consensus 646 ~i~~~~~---i~~~~~~~d~l~~~-------------------------------------------------------- 666 (800)
T 1wb9_A 646 EIGPIDR---IFTRVGAADDLASG-------------------------------------------------------- 666 (800)
T ss_dssp EECCCCE---EEEEEC----------------------------------------------------------------
T ss_pred cceeHHH---HHhhCCHHHHHHhh--------------------------------------------------------
Confidence 3555544 34445555554221
Q ss_pred CCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCc
Q 037155 344 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQI-CKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 344 gL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+ ..+|+|+++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.+++++.|.+
T Consensus 667 -~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~- 730 (800)
T 1wb9_A 667 -R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF- 730 (800)
T ss_dssp -----------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG-
T ss_pred -h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH-
Confidence 0 125666654 4444556899999999999999999888776 6777777654578888887765
Q ss_pred hhHHhhcCEEEEEcCCeEEEec
Q 037155 423 PETYDLFDDIILISEGQIVYHG 444 (1403)
Q Consensus 423 ~~~~~~fD~IilL~~G~iv~~G 444 (1403)
+..+++|++..+.+|++.+..
T Consensus 731 -el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 731 -ELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp -GGGGHHHHSTTEEEEEEEEEE
T ss_pred -HHHHHhhhhhceEEEEEEEEE
Confidence 455688887777777776544
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.36 E-value=1.8e-14 Score=181.98 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=105.4
Q ss_pred EEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC------CCCccceEEEeccCCC
Q 037155 200 TLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN------EFVPQRTCAYISQHDL 273 (1403)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~------~~~~~~~~~yv~Q~d~ 273 (1403)
++|+|||||||||||++|+|...|. .+|.|+++|.++. ....++.++|++|++.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--------------------~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~ 107 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--------------------GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE 107 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------------------------CCCSCEEEEEEECSSSSCCEEEESCC---CC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--------------------CCCeEEEcCEEEEEecCCccccceeEEeeeccccc
Confidence 9999999999999999999987541 4799999998741 1234578999999999
Q ss_pred CCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccc
Q 037155 274 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMV 353 (1403)
Q Consensus 274 ~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 353 (1403)
+++.+||+||+.++....+. .
T Consensus 108 l~~~~tv~e~i~~~~~~~~~----------------------------------------------------~------- 128 (608)
T 3szr_A 108 ISDASEVEKEINKAQNAIAG----------------------------------------------------E------- 128 (608)
T ss_dssp CCCHHHHHTTHHHHHHHHHC----------------------------------------------------S-------
T ss_pred CCCHHHHHHHHHHHHHHhcC----------------------------------------------------C-------
Confidence 99999999999774221100 0
Q ss_pred cCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch----
Q 037155 354 GDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEI------STGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP---- 423 (1403)
Q Consensus 354 g~~~~rgLSGGqkqRvsia~aL~~~p~illLDEp------tsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~---- 423 (1403)
..++| ++++.++.+....|+++++||| |+|||+....++.+.++++.......+++.+.|...
T Consensus 129 ----~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 129 ----GMGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp ----SSCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred ----ccccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 00111 1222222223358999999999 999999999999999999754333333333333321
Q ss_pred hHHh---h-----cCEEEEEcCCeEEEecChhhHHH
Q 037155 424 ETYD---L-----FDDIILISEGQIVYHGPRDNVLE 451 (1403)
Q Consensus 424 ~~~~---~-----fD~IilL~~G~iv~~G~~~~~~~ 451 (1403)
+..+ . ...|+|+.++.++..|+.+++.+
T Consensus 202 ~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 202 EALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 1122 2 24578999998888887655543
No 194
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.35 E-value=1.2e-13 Score=174.47 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=93.4
Q ss_pred EEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC------hhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhC
Q 037155 914 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK------QETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRL 987 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~ 987 (1403)
+||+|||||||||||++|+|...+ ..+|.|.++|.+.. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999997543 13799999997631 13466789999999999999999999987542211
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHH
Q 037155 988 SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1061 (1403)
Q Consensus 988 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP------TsgLD~~~~~ 1061 (1403)
... . ++| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~~~----------------~----------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG----------------M----------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS----------------S----------------CCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc----------------c----------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0 011 0112222233458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 037155 1062 IVMRTVRNTVDT--GRTVVCTIHQPS 1085 (1403)
Q Consensus 1062 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1085 (1403)
.+.++++++.++ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 678889999876
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=4.8e-14 Score=169.24 Aligned_cols=154 Identities=11% Similarity=0.068 Sum_probs=90.7
Q ss_pred cccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
++++.+++|+||.| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|.+.+.+.+|
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 34567999999998 999999999999999999964311112222222211 112356899999988888899
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCC
Q 037155 975 LYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEP 1051 (1403)
Q Consensus 975 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~---illLDEP 1051 (1403)
+.|++.+...... ... ...+.+.+ +. .++.+.+||++|||+++.+|+ +|++|||
T Consensus 92 v~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 92 IVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp EEECC--------------------CHHHHHHH------HH--------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred eeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 9999887643210 000 11111111 11 256677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1052 T-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1052 T-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
| .|||+... +.++.+.. +.+||+++|..+
T Consensus 149 t~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred cccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9 69998874 34445543 788888888654
No 196
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.34 E-value=1.9e-12 Score=136.79 Aligned_cols=75 Identities=11% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 037155 1022 VNGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1022 ~~~LSgGqrqRl~IA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l 1097 (1403)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. ...+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 34699999999999999974 4699999999999999999999999999865 57899999985 46788999986
Q ss_pred Ee
Q 037155 1098 MK 1099 (1403)
Q Consensus 1098 l~ 1099 (1403)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 197
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.31 E-value=5.5e-14 Score=153.31 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=90.3
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC---CceeEEEEEEcCccC--ChhhhcceeeEeecCCCCCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPK--KQETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~~~--~~~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
+|++ +.+++|..++|+|+||||||||++.|+|... ..+..|.+.+.+... ....+....|+..+. .+.-.
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 5666 7789999999999999999999999999651 012234432211000 000000111211100 00000
Q ss_pred ---HHHHHHHHHhh-hC----------CCCCcHHHHHHHHHHHHHHcCCCCcc-cccccCCCCCCCCHHHHHH-HHHHHH
Q 037155 975 ---LYESLLYSAWL-RL----------SSDVDTKKRKIFVDEVMELVELKPLR-DALVGLPGVNGLSTEQRKR-LTIAVE 1038 (1403)
Q Consensus 975 ---v~e~l~~~~~l-r~----------~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqR-l~IA~a 1038 (1403)
.+..+...... +. ...... .+..+.+.++..++.... ..+ ...+|+||||| +..+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK-----~D~~s~~~~~~~~~~~~~ 164 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTK-----ADKLASGARKAQLNMVRE 164 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEEC-----GGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEec-----ccCCCchhHHHHHHHHHH
Confidence 01111111000 00 001111 122344555666654321 222 23589999999 899999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 037155 1039 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1076 (1403)
Q Consensus 1039 L~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1076 (1403)
++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 165 ~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 165 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998766544
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=1.2e-13 Score=164.83 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=112.4
Q ss_pred cccceEeeeeEEEEeCCeE--EEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCC
Q 037155 895 EDRLQLLHSVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 895 ~~~~~iL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 972 (1403)
++... |++||+++++|++ +||+||||||||||+++|+|..- .|.- +... .....++.++|++|++.+++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccc
Confidence 34445 9999999999999 99999999999999999999742 1211 1111 111224578999999888889
Q ss_pred CCHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHHc-CCCC----ccccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 037155 973 VTLYESLLYSAWLRLSSDV--DTKKRKIFVDEVMELV-ELKP----LRDAL----VG--LPGVNGLSTEQRKRLTIAVEL 1039 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l-~L~~----~~~~~----vg--~~~~~~LSgGqrqRl~IA~aL 1039 (1403)
+||.|++.|+......... -.+......++.|+.. ++.. ..|.. +. .+...+|+-.+ +.|+++|
T Consensus 97 ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 97 LTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred cchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 9999998765321000000 0011223344555554 4431 12221 11 11223577776 7899999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 037155 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1083 (1403)
Q Consensus 1040 ~~~P~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1083 (1403)
..+++||++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999988899999987 77779999988764
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.29 E-value=1.1e-13 Score=152.34 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=85.3
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH----HHHHHHH
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL----YESLLYS 982 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv----~e~l~~~ 982 (1403)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+... ..++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 47899999999999999999999999965421357899998876543 234568999997543333222 1111110
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 983 AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 983 ~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
. + . .+.| +++ +.+++..++++||| ||+.++..
T Consensus 91 ~------------------------------~-~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G------------------------------N-Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T------------------------------E-E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h------------------------------c-c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 0 0 0122 111 34556678999999 99999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
+++.+. +++||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 4899999999875
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.28 E-value=2.5e-11 Score=133.14 Aligned_cols=153 Identities=19% Similarity=0.150 Sum_probs=97.7
Q ss_pred EeeeeE-EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 037155 900 LLHSVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYES 978 (1403)
Q Consensus 900 iL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 978 (1403)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.+.++... . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 455555 3689999999999999999999999998 221 2334443321 0 111 11
Q ss_pred HHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 037155 979 LLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1055 (1403)
Q Consensus 979 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG--qrqRl~IA~aL~~~-P~illLDEPTsgL 1055 (1403)
+.- .... ..... +++++.+.+ . ..|++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 122222211 1 23333 46788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCeEEEEecC
Q 037155 1056 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1056 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~i~ll~~g 1101 (1403)
|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24566668887654 8999999998541 356789999999864
No 201
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.25 E-value=3.2e-11 Score=127.37 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=69.6
Q ss_pred CCCChhHhhHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEE
Q 037155 359 RGISGGQKKRVTTGEMLV----GAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL 434 (1403)
Q Consensus 359 rgLSGGqkqRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~Iil 434 (1403)
..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|++.|++ .+...+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEEE
Confidence 459999999999999996 56799999999999999999999999998764 45666665553 57889999986
Q ss_pred E--cCCeE-EEecChhhHHH
Q 037155 435 I--SEGQI-VYHGPRDNVLE 451 (1403)
Q Consensus 435 L--~~G~i-v~~G~~~~~~~ 451 (1403)
+ .+|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 5 46643 34455554443
No 202
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.25 E-value=1.4e-14 Score=172.40 Aligned_cols=73 Identities=15% Similarity=0.022 Sum_probs=48.9
Q ss_pred CChhHhhHHHHHHHHh-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 037155 361 ISGGQKKRVTTGEMLV-GAAKVLLMDE---IS------TGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~-~~p~illLDE---pt------sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 430 (1403)
+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++.. +|. +..+++|
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~~-~~~r~~~ 336 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SPS-YLDRYNQ 336 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CSS-HHHHHHH
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CCC-HHHHHHH
Confidence 5677788888888775 5899999999 65 589999999999999887654466666654 443 4444555
Q ss_pred EEEEE
Q 037155 431 DIILI 435 (1403)
Q Consensus 431 ~IilL 435 (1403)
.+.++
T Consensus 337 ~i~~i 341 (365)
T 1lw7_A 337 VKAVI 341 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.24 E-value=1.1e-11 Score=136.09 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=59.2
Q ss_pred CChhH--hhHHHHHHHHhcC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHHhCCcEEEEEEecCch------
Q 037155 361 ISGGQ--KKRVTTGEMLVGA-AKVLLMDEISTGLDSST--------TFQICKFLKQMVHIMDVTMIVALLQPAP------ 423 (1403)
Q Consensus 361 LSGGq--kqRvsia~aL~~~-p~illLDEptsgLDs~t--------~~~i~~~L~~l~~~~~~tvii~~~q~~~------ 423 (1403)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.|++++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45554 5688888999986 99999999999999743 2456677888887778888877654431
Q ss_pred ------hHHhhcCEEEEEcCC
Q 037155 424 ------ETYDLFDDIILISEG 438 (1403)
Q Consensus 424 ------~~~~~fD~IilL~~G 438 (1403)
.+...+|.|++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 456789999999754
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.23 E-value=2.3e-12 Score=151.89 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcCC
Q 037155 370 TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISEG 438 (1403)
Q Consensus 370 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~G 438 (1403)
+||+||..+|+++++|||+ |..+...+.+ .+. .|.++++++|..+ ..+.+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 8999999999999999999 7666444333 333 4788888877665 33889999988654
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=6.8e-14 Score=150.45 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=90.1
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-TFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|... +..|+.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 68899999999999999999999999743 47899998653211 11234678887644 4678888887654321
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1066 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~ 1066 (1403)
...+.. ..++.+++..++....+. + ..+..+|+|++||++++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~-~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--A-RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--C-SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--C-CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 100000 000111111111111100 1 012359999999999999999999876 688877777777
Q ss_pred HHHHH
Q 037155 1067 VRNTV 1071 (1403)
Q Consensus 1067 l~~~~ 1071 (1403)
++.+.
T Consensus 144 ~~~l~ 148 (191)
T 1zp6_A 144 FADLG 148 (191)
T ss_dssp TTCCG
T ss_pred HhccC
Confidence 66553
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.22 E-value=1.2e-14 Score=156.35 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=108.0
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSD 990 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~ 990 (1403)
|++++|+||||||||||+++|++.. .|.+.++|.+... ....|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999732 3678888754321 1235777776544455678888776543211000
Q ss_pred CcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 991 VDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 991 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L--SgGqrqRl~IA~------aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
. ..+++.+......+. .+.+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0123 778887887777 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCeEEEEecCcEEEEecCCC
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELLLMKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~i~ll~~gG~~~~~g~~~ 1111 (1403)
++.++.+.+.+.+||.++|. ++ ++.+.||+++ + .|+++..|++.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 88888876667899999998 76 5778899988 4 68888888753
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.21 E-value=1.5e-12 Score=154.86 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=95.1
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
+|++++ +++|++++|+||||||||||+++|+|...+. .+|.|.+.|.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 677776 8999999999999999999999999964321 1588877665543 22345578888741
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
+|+. ...+ +.+|+.+|..+|++|++|||| |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1111 1134 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1060 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
.. ..++. +..|.+|++|+|..+ ..+.+|+++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 33443 356999999999965 567788877663
No 208
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.21 E-value=2.2e-13 Score=146.43 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=86.7
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccceEEEeccC
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRTCAYISQH 271 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~ 271 (1403)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.++.... .++.++|++|+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-----------------------~~g~i~i~~d~~~~~~~~~~~~~~~~~~ 61 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-----------------------GVPKVHFHSDDLWGYIKHGRIDPWLPQS 61 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-----------------------SSCEEEECTTHHHHTCCSSCCCTTSSSH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-----------------------CCCeEEEcccchhhhhhcccccCCccch
Confidence 36799999999999999999999999973 3689999987643221 12345777775
Q ss_pred CCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccc--
Q 037155 272 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICA-- 349 (1403)
Q Consensus 272 d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-- 349 (1403)
.. +.+||.|++.+.+... .. .+.. . ..+.+++..+++...
T Consensus 62 ~~--~~~~v~~~l~~~~~~~------------~~----~~~~--~------------------~~~~~~~~~~l~~~~~~ 103 (191)
T 1zp6_A 62 HQ--QNRMIMQIAADVAGRY------------AK----EGYF--V------------------ILDGVVRPDWLPAFTAL 103 (191)
T ss_dssp HH--HHHHHHHHHHHHHHHH------------HH----TSCE--E------------------EECSCCCTTTTHHHHTT
T ss_pred hh--hhHHHHHHHHHHHHHH------------hc----cCCe--E------------------EEeccCcHHHHHHHHhc
Confidence 43 3568888887643210 00 0000 0 000000001111111
Q ss_pred cccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 350 DTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 350 dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
+..+ ..+|+|++||+.++|++..+|+++ +|+.....+.+.++.
T Consensus 104 ~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 104 ARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp CSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred CCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 1122 239999999999999999999876 587766666665543
No 209
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.20 E-value=1.2e-12 Score=144.04 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=49.1
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccC
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQH 271 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 271 (1403)
-..++|++++|+||||||||||+++|+|..+++ ..+|.|.+++.+.... .++.++|++|+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-------------------~~~g~v~~ttr~~~~~-e~~gi~y~fq~ 70 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-------------------DTQVSVSHTTRQPRPG-EVHGEHYFFVN 70 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-------------------TEEECCCEECSCCCTT-CCBTTTBEECC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-------------------ceEEEEEecCCCCCcc-cccCceEEECC
Confidence 357899999999999999999999999987641 1578898888765431 23568899997
Q ss_pred CCCCCCCCH
Q 037155 272 DLHHGEMTV 280 (1403)
Q Consensus 272 d~~~~~lTV 280 (1403)
+..|+.+|+
T Consensus 71 ~~~f~~~~~ 79 (219)
T 1s96_A 71 HDEFKEMIS 79 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 654444333
No 210
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=2.9e-12 Score=153.75 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=85.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQ 262 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~ 262 (1403)
++.+++|+|+.| +|+||||||||||+++|+|...+.. ..|.+.+++.. ....
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-------------------~~~~~~~~~~~---t~~~ 74 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-------------------EYPGPSHRIKK---TVQV 74 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-------------------CCCSCC--------CCEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-------------------CCCCcccCCcc---ceee
Confidence 457999999998 9999999999999999999864310 11111111110 1113
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 263 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 263 ~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
+.++|+.|++.+++.+||.||+.|+..... . ... ....+++ +
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-------------~---------~~~--------------~~i~~~i-~- 116 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-------------S---------NCW--------------QPVIDYI-D- 116 (418)
T ss_dssp EEEECC------CEEEEEEECC---------------------------------C--------------HHHHHHH-H-
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc-------------h---------hhH--------------HHHHHHH-H-
Confidence 568999999888888999999877522100 0 000 0011111 1
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAK---VLLMDEIS-TGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~---illLDEpt-sgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
..++++.+||++|||+++.+|+ ++++|||| .|||+... +.++.+.. +.++|+++
T Consensus 117 ----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVi 174 (418)
T 2qag_C 117 ----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLI 174 (418)
T ss_dssp ----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEE
T ss_pred ----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEE
Confidence 1256678889999999999999 99999999 69998773 33344432 56666666
Q ss_pred ec
Q 037155 419 LQ 420 (1403)
Q Consensus 419 ~q 420 (1403)
++
T Consensus 175 nK 176 (418)
T 2qag_C 175 AK 176 (418)
T ss_dssp ES
T ss_pred Ec
Confidence 54
No 211
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.19 E-value=2.8e-13 Score=143.15 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC------cc-ceEE----
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV------PQ-RTCA---- 266 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~------~~-~~~~---- 266 (1403)
++++|+||||||||||+++|+|.+++.+. ..|.|.++|+++.+.. .+ +.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~------------------~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~ 64 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGL------------------RVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVV 64 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTC------------------CEEEEEC------------CHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCC------------------ceEEEEEcCcccccCCccchhHHHHHhcCCceE
Confidence 57999999999999999999999875311 2699999998754332 12 2455
Q ss_pred EeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCc
Q 037155 267 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLD 346 (1403)
Q Consensus 267 yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 346 (1403)
+++|+..++ ++| + . .+. . + ..+..++. .|+
T Consensus 65 ~~~~~~~~~----i~~---------~--~--------------------~~~-----~---a------~l~~~i~~-~l~ 94 (171)
T 2f1r_A 65 IASPVKLAF----IRR---------V--S--------------------EEE-----G---N------DLDWIYER-YLS 94 (171)
T ss_dssp EECSSEEEE----EEE---------C--C--------------------HHH-----H---T------CHHHHHHH-HTT
T ss_pred EECCCcEEE----Eec---------C--C--------------------hhh-----h---h------CHHHHHHh-hCC
Confidence 778876544 000 0 0 000 0 0 01222333 134
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHHhcCCcEe-------EEeCCCCC---CCHHHHHHHHHHHHHHHH
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVL-------LMDEISTG---LDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~il-------lLDEptsg---LDs~t~~~i~~~L~~l~~ 408 (1403)
.+||.+++ +||||||||++||||++++|++. .-|.|..+ +|......+.+.+.+...
T Consensus 95 -g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 95 -DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp -TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred -CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 68999996 49999999999999999999873 22444322 334455677777766544
No 212
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.18 E-value=1.4e-14 Score=169.15 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=101.2
Q ss_pred eEEEEEccCCCchHHHHHhhcCCCCC------ceeEEEEEEcCccCCh------------------hhhcceeeEe---e
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRKTG------GYIEGDIKISGYPKKQ------------------ETFARVSGYC---E 964 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~------------------~~~~~~~gyv---~ 964 (1403)
++++|+|+||||||||++.|.|...+ ....|+|.+||.+... ..+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 0135888888876432 1234456777 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--hh-hCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 037155 965 QTDIHSPHVTLYESLLYSA--WL-RLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA 1041 (1403)
Q Consensus 965 Q~~~~~~~lTv~e~l~~~~--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~ 1041 (1403)
|+..+.+..++.|+..++. .+ +.....+...+...++.++..+++.+..+... .+|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7666566777777765431 00 00000000001111222333444444444432 489999999999899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888875 5899999999864
No 213
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.17 E-value=5.7e-14 Score=151.03 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCC
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHG 276 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 276 (1403)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.+...+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------------------------~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~ 54 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------------------------LDNSAYIEGDIINHM---VVGGYRPPWESDEL 54 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------------------------SSSEEEEEHHHHHTT---CCTTCCCGGGCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------------------------cCCeEEEcccchhhh---hccccccCccchhH
Confidence 689999999999999999999973 368899988654321 23456666654444
Q ss_pred CCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccC-
Q 037155 277 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGD- 355 (1403)
Q Consensus 277 ~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~- 355 (1403)
.+|+++++.+.++... . . +-....|...+.
T Consensus 55 ~~~~~~~l~~~~~~~~------------~----~---------------------------------~~~~ild~~~~~~ 85 (189)
T 2bdt_A 55 LALTWKNITDLTVNFL------------L----A---------------------------------QNDVVLDYIAFPD 85 (189)
T ss_dssp HHHHHHHHHHHHHHHH------------H----T---------------------------------TCEEEEESCCCHH
T ss_pred HHHHHHHHHHHHHHHH------------h----c---------------------------------CCcEEEeeccCHH
Confidence 5678888766422100 0 0 000000000000
Q ss_pred --ccCCCC--ChhHhhHHHHHH------HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 356 --EMRRGI--SGGQKKRVTTGE------MLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 356 --~~~rgL--SGGqkqRvsia~------aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
+..+.+ |+|++|++.++. +++.+++...+|+ +||+..... .+.++.+.. .+.++|.+.|....++
T Consensus 86 ~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~ 160 (189)
T 2bdt_A 86 EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNL 160 (189)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGH
T ss_pred HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhH
Confidence 000124 899999988877 8899998888884 899988888 888877643 3567776655414577
Q ss_pred HhhcCEEEEEcCCeEEEecChhhH
Q 037155 426 YDLFDDIILISEGQIVYHGPRDNV 449 (1403)
Q Consensus 426 ~~~fD~IilL~~G~iv~~G~~~~~ 449 (1403)
.+.+|+|+ ++|+++..|+++-+
T Consensus 161 e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 161 NDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHHHH--HCGGGSCC------
T ss_pred HHHHHHHh--hCCcEEEeecCCch
Confidence 88899998 99999999988654
No 214
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=6.1e-11 Score=141.30 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1022 VNGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1022 ~~~LSgGqrqRl------~IA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567889999 99999999999999999999999999974 3579999999975 5688999
Q ss_pred EEEEecCc
Q 037155 1095 LLLMKRGG 1102 (1403)
Q Consensus 1095 i~ll~~gG 1102 (1403)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998544
No 215
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.17 E-value=3e-12 Score=151.81 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=98.9
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC-hhhhcceeeEee-cCCCCCCCCCHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK-QETFARVSGYCE-QTDIHSPHVTLYE 977 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-~~~~~~~~gyv~-Q~~~~~~~lTv~e 977 (1403)
+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 44999999999999999999999999999999997654 3699999985321 122456678887 54321
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037155 978 SLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1057 (1403)
Q Consensus 978 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~ 1057 (1403)
+++++...+-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233456677777888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 037155 1058 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1058 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~~g 1101 (1403)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455667666543458899999975 56778999988764
No 216
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.15 E-value=1.6e-12 Score=135.64 Aligned_cols=78 Identities=22% Similarity=0.101 Sum_probs=65.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ + .+|+|.++|.++......+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~---------------------~~G~V~~~g~~i~~~~~~~ 77 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G---------------------HQGNVKSPTYTLVEEYNIA 77 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T---------------------CCSCCCCCTTTCEEEEEET
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C---------------------CCCeEEECCEeeeeeccCC
Confidence 45899999999999999999999999999999999988 4 4799999998764211111
Q ss_pred eEEEeccCCCCCCCCCHHHHHHh
Q 037155 264 TCAYISQHDLHHGEMTVRETLDF 286 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f 286 (1403)
.|++|+..++ .+||.|++.+
T Consensus 78 --~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 78 --GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp --TEEEEEEECT-TCSCTTHHHH
T ss_pred --Ccceeccccc-cCCcHHHHHH
Confidence 2799998888 8999999965
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.15 E-value=2.7e-11 Score=135.00 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=84.6
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCC--CCC---ceeEEEEEEcCccC-Chhh---hcceeeEeecCCCCCCCCCHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYIEGDIKISGYPK-KQET---FARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+-+++|++++|+||||||||||++.|++. ..+ +...|.+++++... .... ..+.+|+.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 45899999999999999999999999982 221 11246777776542 1110 0111121111
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTS 1053 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR-l~IA~aL~--~~P~illLDEPTs 1053 (1403)
++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++
T Consensus 88 -------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 11111100 01244444332 33333444 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcHHHH-------------------HhcCeEEEEecC
Q 037155 1054 GLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF-------------------EAFDELLLMKRG 1101 (1403)
Q Consensus 1054 gLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~-------------------~~~d~i~ll~~g 1101 (1403)
.+|+. + ...+++.|+++++ .|+|||+++|... +.. ..+|.+++|.++
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 3456666666654 4999999999653 221 168999999863
No 218
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.14 E-value=1.3e-12 Score=142.27 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHcCCccc-ccccccCccCCCCChhHhhH-HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 339 VLKLLGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 339 il~~lgL~~~-~dt~vg~~~~rgLSGGqkqR-vsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
.++..+++.. ..+++. .+|+||||| +..+++++.+|+.+++|||||++|.....++.+.|.++..
T Consensus 132 ~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3455666643 244443 389999999 8999999999999999999999999999999999988764
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.14 E-value=9e-14 Score=156.20 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=96.9
Q ss_pred CCeEEEEEccCCCchHHHHHhhc---CCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
++++++|+||||||||||+++|+ |... ...|++.++|.+.. ......+++++|+..+.+..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8754 23577777665432 122344566778777788889999987643110
Q ss_pred C-----CCCCcHHHHHHHHHHHHHH--cC------------CCCcccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 037155 987 L-----SSDVDTKKRKIFVDEVMEL--VE------------LKPLRDALVGLPGVNGLSTEQRKRLTIAVEL-VANPSII 1046 (1403)
Q Consensus 987 ~-----~~~~~~~~~~~~v~~~l~~--l~------------L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL-~~~P~il 1046 (1403)
. ....+... ..++.+.+. ++ +....++. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 0 00111111 112222211 11 11122222 235888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 037155 1047 FMD----EPTSGLDARAAAIVMRTVRNTVDTG 1074 (1403)
Q Consensus 1047 lLD----EPTsgLD~~~~~~i~~~l~~~~~~g 1074 (1403)
+|| |||+|||..+...+.+.++++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999886543
No 220
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.14 E-value=1.5e-11 Score=145.77 Aligned_cols=136 Identities=16% Similarity=0.104 Sum_probs=93.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-ccce
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV-PQRT 264 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~-~~~~ 264 (1403)
+++++|+.+++|++++|+||||||||||+++|+|.+++ .+|.|+++|..--... .++.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~---------------------~~g~I~ie~~~e~~~~~~~~~ 222 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF---------------------DQRLITIEDVPELFLPDHPNH 222 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT---------------------TSCEEEEESSSCCCCTTCSSE
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC---------------------CceEEEECCccccCccccCCE
Confidence 34999999999999999999999999999999999865 4799999985311111 3466
Q ss_pred EEEec-cCCCC--CCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 265 CAYIS-QHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 265 ~~yv~-Q~d~~--~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++|++ |++.. ++..|
T Consensus 223 v~~v~~q~~~~~~~~~~t-------------------------------------------------------------- 240 (361)
T 2gza_A 223 VHLFYPSEAKEEENAPVT-------------------------------------------------------------- 240 (361)
T ss_dssp EEEECC----------CC--------------------------------------------------------------
T ss_pred EEEeecCccccccccccC--------------------------------------------------------------
Confidence 88888 55322 12333
Q ss_pred HcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 037155 342 LLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQP 421 (1403)
Q Consensus 342 ~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 421 (1403)
.|..|+.++..+|+.+++||+.. .++.+.++.+.. ...|++.++|..
T Consensus 241 -------------------------~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~ 287 (361)
T 2gza_A 241 -------------------------AATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAG 287 (361)
T ss_dssp -------------------------HHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECS
T ss_pred -------------------------HHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCC
Confidence 44455555556789999999985 234455655543 234667777764
Q ss_pred chhHHhhcCEEEEEcCCe
Q 037155 422 APETYDLFDDIILISEGQ 439 (1403)
Q Consensus 422 ~~~~~~~fD~IilL~~G~ 439 (1403)
.....+||+..|..|.
T Consensus 288 --~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 288 --SCELTFERLALMVLQN 303 (361)
T ss_dssp --SHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHhcc
Confidence 3677889998887764
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=8.5e-12 Score=148.97 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=102.0
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc
Q 037155 184 VQILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~--~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~ 261 (1403)
.+ |+++|+.+++|++ ++|+||||||||||+++|+|.. ..|..... ......
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----------------------l~g~~~~~---~~~~~~ 80 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----------------------FEGEPATH---TQPGVQ 80 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----------------------C----------CCSSCE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----------------------ccCCcCCC---CCccce
Confidence 45 9999999999999 9999999999999999999974 12221100 001112
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHH
Q 037155 262 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 341 (1403)
Q Consensus 262 ~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 341 (1403)
++.++|++|++.+++.+||.||+.|+...... ..++ .+..+++ ...+..+.
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~-~~~~------------------~i~~~i~----------~q~~~~L~ 131 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKE-DSYK------------------PIVEFID----------AQFEAYLQ 131 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCHH-HHSH------------------HHHHHHH----------HHHHHHHH
T ss_pred EeeEEEEeecCccccccchhhhhhhhhccccc-hhhh------------------HHHHHHH----------HHHHHHHH
Confidence 35799999999888899999999876421100 0000 0011111 01222333
Q ss_pred Hc-CCc----cccccc----cc--CccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HHHh
Q 037155 342 LL-GLD----ICADTM----VG--DEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ-MVHI 409 (1403)
Q Consensus 342 ~l-gL~----~~~dt~----vg--~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~-l~~~ 409 (1403)
.. ++. ...|+. +. .+..++++-.+ +.|+++|..+++|+++|||+..|.+.....+.+.+++ +..
T Consensus 132 e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~- 207 (427)
T 2qag_B 132 EELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS- 207 (427)
T ss_dssp HC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-
T ss_pred HHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-
Confidence 32 433 122332 11 11124577666 7899999999999999999999998888888888876 433
Q ss_pred CCcEE
Q 037155 410 MDVTM 414 (1403)
Q Consensus 410 ~~~tv 414 (1403)
.|..+
T Consensus 208 ~gi~I 212 (427)
T 2qag_B 208 NGVQI 212 (427)
T ss_dssp TBCCC
T ss_pred cCCcE
Confidence 34443
No 222
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.13 E-value=1.7e-13 Score=163.12 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=94.5
Q ss_pred eeeeEEEEeC--CeEEEEEccCCCchHHHHHhhcCCCCCceeE----EEEEEc----CccC--ChhhhcceeeEeecCCC
Q 037155 901 LHSVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKIS----GYPK--KQETFARVSGYCEQTDI 968 (1403)
Q Consensus 901 L~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~--~~~~~~~~~gyv~Q~~~ 968 (1403)
.+.|++.|++ |++++|+||||||||||+++|+|...+ .. |.+.++ |.+. ....+ +.++|++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4578888999 999999999999999999999997543 24 555442 2111 00011 11233322110
Q ss_pred CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEE
Q 037155 969 HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-ANPSIIF 1047 (1403)
Q Consensus 969 ~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~-~~P~ill 1047 (1403)
.+ ..|+.||+.+. + .+..+.. ...+|+|++|+..+++++. .+|+++|
T Consensus 235 ~~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DY-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HH-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HH-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 00 00111111000 0 0011111 1135667788888888775 5999999
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1048 MDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1048 LDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + +....+|++.++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 999 65 58999999999999988754 48899999975 3 344555555444
No 223
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.12 E-value=1.6e-11 Score=145.99 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=91.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceE
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTC 265 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~ 265 (1403)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...++.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--------------------~~g~I~~~e~~~e-~~~~~~~ 183 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--------------------KSYHIITIEDPIE-YVFKHKK 183 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--------------------SCCEEEEEESSCC-SCCCCSS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--------------------CCcEEEEecccHh-hhhccCc
Confidence 677776 8999999999999999999999999988642 2699977765543 2334456
Q ss_pred EEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCC
Q 037155 266 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGL 345 (1403)
Q Consensus 266 ~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 345 (1403)
+||+|.. + |+
T Consensus 184 ~~v~Q~~-------------~---------------------------------------------------------g~ 193 (372)
T 2ewv_A 184 SIVNQRE-------------V---------------------------------------------------------GE 193 (372)
T ss_dssp SEEEEEE-------------B---------------------------------------------------------TT
T ss_pred eEEEeee-------------c---------------------------------------------------------CC
Confidence 6666631 0 11
Q ss_pred cccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 037155 346 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPET 425 (1403)
Q Consensus 346 ~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~ 425 (1403)
+ . ..+ +.+|+++|..+|+++++|||+ |..+... .++. + ..|.+++.++|.. +.
T Consensus 194 ~----~-------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~--~~ 246 (372)
T 2ewv_A 194 D----T-------KSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTN--TA 246 (372)
T ss_dssp T----B-------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCC--SH
T ss_pred C----H-------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcc--hH
Confidence 0 0 113 468999999999999999999 7766433 3443 2 2467776666543 46
Q ss_pred HhhcCEEEEEc
Q 037155 426 YDLFDDIILIS 436 (1403)
Q Consensus 426 ~~~fD~IilL~ 436 (1403)
.+.+|+++.|.
T Consensus 247 ~~~~~rl~~l~ 257 (372)
T 2ewv_A 247 IDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhc
Confidence 77788876653
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.11 E-value=1.1e-11 Score=145.14 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=81.1
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCC-CceeEEEEEEc-CccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKIS-GYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
.+|++++|+||||||||||+|+|+|... . .+|+|.++ |.... .+..+.++|++|+..+++..+++|+ . +
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~---~--l- 283 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF---G--L- 283 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTC---C--C-
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh---h--h-
Confidence 3799999999999999999999999754 3 36888887 65542 2345678999999888888888883 1 1
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1039 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL 1039 (1403)
...+.++..+.+.++++.+++.+..|... .++| ||+||++||+++
T Consensus 284 --~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 --WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp --CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred --cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 12344455566788999999988887764 3799 999999999865
No 225
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.11 E-value=1.2e-12 Score=146.99 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHh---ccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCC
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALA---GKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHD 272 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~La---G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 272 (1403)
++++++|+||||||||||+++|+ |...+ ..|+|.++|.+... ...+.+.++.|+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---------------------~~G~i~~~~~~~~~-~~~~~i~~~~~~~ 83 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---------------------SSGHFLRENIKAST-EVGEMAKQYIEKS 83 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---------------------EHHHHHHHHHHTTC-HHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---------------------cHHHHHHHHHhcCC-hHHHHHHHHHHcC
Confidence 36899999999999999999999 87654 35666666543211 1123345567777
Q ss_pred CCCCCCCHHHHHHhhccc-ccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHH-hhccch----hHHHHHHHHHcCCc
Q 037155 273 LHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVA-VAGQET----SLVTDYVLKLLGLD 346 (1403)
Q Consensus 273 ~~~~~lTVrE~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~-~~~~~~----~~~~~~il~~lgL~ 346 (1403)
.+++..|+.|++...... .+.+-.. .+. +... +. .+... ...... ..-.+.. ++
T Consensus 84 ~~~~~~~v~~~l~~~l~~~~~~~~il------------~g~-~~~~-~~-~~~l~~~~~~~~vi~L~~~~~~~-----l~ 143 (246)
T 2bbw_A 84 LLVPDHVITRLMMSELENRRGQHWLL------------DGF-PRTL-GQ-AEALDKICEVDLVISLNIPFETL-----KD 143 (246)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTSCEEE------------ESC-CCSH-HH-HHHHHTTCCCCEEEEEECCHHHH-----HH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEE------------ECC-CCCH-HH-HHHHHhhcCCCEEEEEECCHHHH-----HH
Confidence 778888999999764210 0000000 000 0000 00 00000 000000 0000000 11
Q ss_pred ccccccccCccCCCCChhHhhHHHHHHHH-hcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 037155 347 ICADTMVGDEMRRGISGGQKKRVTTGEML-VGAAKVLLMD----EISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 347 ~~~dt~vg~~~~rgLSGGqkqRvsia~aL-~~~p~illLD----EptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
...+..++ .+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+
T Consensus 144 r~~~r~~~-----~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 144 RLSRRWIH-----PPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HHHTEEEE-----TTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HHHcCCCc-----CCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 12233343 3898 66 677 9999999999 99999999999999999988755
No 226
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.09 E-value=1.5e-11 Score=141.22 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=83.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCC
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLH 274 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~ 274 (1403)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----------------------~g------~------~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----------------------KY------G------GEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----------------------HH------G------GGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----------------------cC------C------CCceEEEecccccc
Confidence 36789999999999999999999998742 12 0 02345666999998
Q ss_pred CCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcCCccccccc--
Q 037155 275 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTM-- 352 (1403)
Q Consensus 275 ~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~-- 352 (1403)
++. ++++|+.++..-.+.-. ..+.....+.+. ....++.+. ...+|.
T Consensus 75 ~~~-~~~~~l~~~~~~~~l~~-------------~~g~p~a~d~~~---------------l~~~l~~l~--~g~~t~~~ 123 (290)
T 1odf_A 75 LTH-EDQLKLNEQFKNNKLLQ-------------GRGLPGTHDMKL---------------LQEVLNTIF--NNNEHPDQ 123 (290)
T ss_dssp CCH-HHHHHHHHHTTTCGGGS-------------SSCSTTSBCHHH---------------HHHHHHHHT--C------C
T ss_pred CCh-HHHHHHhccccccchhh-------------hccCcchhHHHH---------------HHHHHHHhh--ccCccccC
Confidence 865 89999987521000000 001101111111 112233332 222221
Q ss_pred ----ccCccCCCCChhHhhHHHHH--HHHhcCCcEeEEeCCCCCCCHHH
Q 037155 353 ----VGDEMRRGISGGQKKRVTTG--EMLVGAAKVLLMDEISTGLDSST 395 (1403)
Q Consensus 353 ----vg~~~~rgLSGGqkqRvsia--~aL~~~p~illLDEptsgLDs~t 395 (1403)
+. .....+||||+||+.+| +++ +|+|+|+||+++++|+..
T Consensus 124 ~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 124 DTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 22 23367999999999997 555 999999999999999864
No 227
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.07 E-value=6.3e-12 Score=150.77 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=96.3
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLL 980 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 980 (1403)
-++|++++++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999642 23333321 12233555555431 0111111110
Q ss_pred HHHhhhCCCCCcHHHH--HHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 037155 981 YSAWLRLSSDVDTKKR--KIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1058 (1403)
Q Consensus 981 ~~~~lr~~~~~~~~~~--~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~ 1058 (1403)
+............... .+.++.++..+++. +. ....||+|++||+.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111100 00112222233332 11 1336999999999999999999999999 999997
Q ss_pred HHHHHHHHHHH-HHhCCCEEEEEecCCcHHHHHhcCeE
Q 037155 1059 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1059 ~~~~i~~~l~~-~~~~g~tvi~~~H~~~~~~~~~~d~i 1095 (1403)
.+ ..++.+++ +.+.|.+++.+|......+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 76 44444444 44457777665543222455555443
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.06 E-value=3.8e-11 Score=144.95 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=66.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC-------
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF------- 259 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~------- 259 (1403)
-+++|+.+++|++++|+||||||||||++.|+|++.+ .+|+|.++|.+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~---------------------~~G~V~l~g~D~~r~aa~eQL~ 341 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ---------------------QGKSVMLAAGDTFRAAAVEQLQ 341 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH---------------------TTCCEEEECCCTTCHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh---------------------cCCeEEEecCcccchhhHHHHH
Confidence 3689999999999999999999999999999999854 479999987654321
Q ss_pred C--ccceEEEeccCCCCCCCCCHHHHHHhh
Q 037155 260 V--PQRTCAYISQHDLHHGEMTVRETLDFS 287 (1403)
Q Consensus 260 ~--~~~~~~yv~Q~d~~~~~lTVrE~l~f~ 287 (1403)
. .++.++|++|+...++.+||++++.++
T Consensus 342 ~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 342 VWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 0 145689999998888888999999875
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.05 E-value=2.4e-12 Score=134.20 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=65.6
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTL 975 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 975 (1403)
+++.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.+.... .. ...|++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~-~~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YN-IAGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EE-ETTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-cc-CCCcceeccccc-cCCc
Confidence 4456899999999999999999999999999999999966 3 369999999876421 11 113899988787 8999
Q ss_pred HHHHHH
Q 037155 976 YESLLY 981 (1403)
Q Consensus 976 ~e~l~~ 981 (1403)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 230
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.05 E-value=2.1e-10 Score=139.42 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 037155 1023 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1098 (1403)
Q Consensus 1023 ~~LSgGqrqRl~IA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll 1098 (1403)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|||++ ...+.||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 369999999999999999 58999999999999999999999999999876688999999985 467789999998
Q ss_pred ec
Q 037155 1099 KR 1100 (1403)
Q Consensus 1099 ~~ 1100 (1403)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.04 E-value=1.3e-11 Score=148.92 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=100.0
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hh--hcceeeEeecCCCCCCC
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ET--FARVSGYCEQTDIHSPH 972 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 972 (1403)
+++|+.+++|++++|+|+||||||||+++|+|.... ..|+|.++|.+... .. .++.++|++|+..+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 578889999999999999999999999999996532 24889998765432 11 24568999999888888
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMDE 1050 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~-~~P~-illLDE 1050 (1403)
+|+++++.+...- ..+. -+++..|+.+... .+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~--~~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKAR--NIDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHT--TCSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhc--CCCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 9999999876421 1110 0112222221111 12223457888888664 4573 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 037155 1051 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1082 (1403)
Q Consensus 1051 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1082 (1403)
||+|.|.. +.++.+.+ .|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886654 22333332 4789999999
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.03 E-value=1e-10 Score=120.76 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 037155 1040 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 1085 (1403)
Q Consensus 1040 ~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~~ 1085 (1403)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999998877888 888999643
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.03 E-value=2.1e-12 Score=136.41 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=84.3
Q ss_pred eEEEEEccCCCchHHHHHhhcCCCCC-ceeEEEEEEcCccCC------hhhhc-ceee----EeecCCCCCCCCCHHHHH
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKK------QETFA-RVSG----YCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~e~l 979 (1403)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 57999999999999999999996432 233699999998732 22344 3567 788876543 1
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHH-cCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMEL-VELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 1051 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~il-------lLDEP 1051 (1403)
+.. ..+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 75 ------~~~---~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV---SEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC---CHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC---Chh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 100 011 11124555555 43 24677764 59999999999999999999772 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 037155 1052 TSG---LDARAAAIVMRTVRNTVDTGR 1075 (1403)
Q Consensus 1052 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1075 (1403)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233444566666666555543
No 234
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=2.1e-10 Score=127.80 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=42.1
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCchh------------------HH
Q 037155 377 GAAKVLLMDEISTGLDSS-------T-----TFQICKFLKQMVHIMDVTMIVALLQPAPE------------------TY 426 (1403)
Q Consensus 377 ~~p~illLDEptsgLDs~-------t-----~~~i~~~L~~l~~~~~~tvii~~~q~~~~------------------~~ 426 (1403)
.+|+++++|||++.+|+. + ..++++.|+++++..+.|++++.|..... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 3 34567777777777788888765532210 22
Q ss_pred hhcCEEEEEcCC
Q 037155 427 DLFDDIILISEG 438 (1403)
Q Consensus 427 ~~fD~IilL~~G 438 (1403)
..+|.+++|+.|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 379999999865
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.02 E-value=3e-11 Score=141.51 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=78.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc-ccchhhcccchhhhhhhccCCCcceEEEEC-CccCCCCCccce
Q 037155 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWKTEQASGKITYC-GHELNEFVPQRT 264 (1403)
Q Consensus 187 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~-G~~~~~~~~~~~ 264 (1403)
+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |..... ...+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---------------------~~G~I~~~~G~g~~t-t~~~~ 262 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---------------------LTNDVSNVSGLGQHT-TTAAR 262 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---------------------CCC--------------CCCE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---------------------ccCCccccCCCCccc-eEEEE
Confidence 4555553 4799999999999999999999999875 4 57999887 654422 23467
Q ss_pred EEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHHcC
Q 037155 265 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKLLG 344 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 344 (1403)
++|++|+..+++..||+|+ +. .+. .+.+ . ....+.+++.+|
T Consensus 263 i~~v~q~~~l~dtpgv~e~---~l--~~l----------~~~e----------~--------------~~~~~e~l~~~g 303 (358)
T 2rcn_A 263 LYHFPHGGDVIDSPGVREF---GL--WHL----------EPEQ----------I--------------TQGFVEFHDYLG 303 (358)
T ss_dssp EEECTTSCEEEECHHHHTC---CC--CCC----------CHHH----------H--------------HHTSGGGGGGTT
T ss_pred EEEECCCCEecCcccHHHh---hh--cCC----------CHHH----------H--------------HHHHHHHHHHcC
Confidence 9999999988988899984 21 110 0000 0 011234567788
Q ss_pred CcccccccccCccCCCCChhHhhHHHHHHHH
Q 037155 345 LDICADTMVGDEMRRGISGGQKKRVTTGEML 375 (1403)
Q Consensus 345 L~~~~dt~vg~~~~rgLSGGqkqRvsia~aL 375 (1403)
+.+..|..+.+ +| ||+||++||+++
T Consensus 304 l~~f~~~~~~~-----lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 304 HCKYRDCKHDA-----DP-GCAIREAVENGA 328 (358)
T ss_dssp CSSSTTCCSSS-----CT-TCHHHHHHHHTS
T ss_pred CchhcCCCccc-----CC-HHHHHHHHHhcC
Confidence 87777777654 99 999999999764
No 236
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.02 E-value=5.3e-13 Score=156.72 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=104.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hhcceeeEeecCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TFARVSGYCEQTDIH 969 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~ 969 (1403)
...+|+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35689999999999999999999999999999999985432 247788887654321 234568999998877
Q ss_pred CCCC------------CHHHHHHHH-H------------------hhhCCC-------CCc-HHHHHHHHHHHHHHcCCC
Q 037155 970 SPHV------------TLYESLLYS-A------------------WLRLSS-------DVD-TKKRKIFVDEVMELVELK 1010 (1403)
Q Consensus 970 ~~~l------------Tv~e~l~~~-~------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~L~ 1010 (1403)
++.. ++.|.+... . .+.... +.. ..........+++...+-
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 6532 123332110 0 000000 000 000000000111211111
Q ss_pred --CcccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1011 --PLRDALVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1011 --~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++..
T Consensus 199 vlNK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AVNKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEchhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111210 113479999999999999987 688887 999999999999999988653
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.02 E-value=1.5e-11 Score=143.38 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---------cce
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP---------QRT 264 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~---------~~~ 264 (1403)
.++|++++|+||||||||||++.|+|.+.+ .+|+|.++|.+...... +..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~---------------------~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN---------------------HGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH---------------------TTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh---------------------cCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 478999999999999999999999999864 47999999987643221 123
Q ss_pred EEEeccCCCCCCCCCHHHHHHhh
Q 037155 265 CAYISQHDLHHGEMTVRETLDFS 287 (1403)
Q Consensus 265 ~~yv~Q~d~~~~~lTVrE~l~f~ 287 (1403)
+.|++|...+.|.+||+||+.++
T Consensus 185 v~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 185 VKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp CEEECCCTTCCHHHHHHHHHHHH
T ss_pred ceEEeccccCCHHHHHHHHHHHH
Confidence 56999999999999999999764
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=8.2e-12 Score=146.58 Aligned_cols=182 Identities=15% Similarity=0.079 Sum_probs=107.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC----
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---- 259 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---- 259 (1403)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+ .+|+|.+.|.+....
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~---------------------~~g~v~i~~~d~~~~~~~~ 100 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA---------------------AGHKVAVLAVDPSSTRTGG 100 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH---------------------TTCCEEEEEECGGGGSSCC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh---------------------CCCEEEEEEEcCccccccc
Confidence 3589999999999999999999999999999999998754 479999988765321
Q ss_pred ---CccceEEEeccCCCCCCCC------------CHHHHHHhh----ccc---ccccchhhHHHHhhHHHHhcCC---CC
Q 037155 260 ---VPQRTCAYISQHDLHHGEM------------TVRETLDFS----GRC---LGVGTRYELLAELSRREKQQGI---KP 314 (1403)
Q Consensus 260 ---~~~~~~~yv~Q~d~~~~~l------------TVrE~l~f~----~~~---~~~~~~~~~~~~~~~~e~~~~i---~~ 314 (1403)
..++.++|++|++..++.. +++|.+... ..+ ..+|-... +.. .+...+. ..
T Consensus 101 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~~-v~~~~d~vl~v~ 176 (337)
T 2qm8_A 101 SILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ETA-VADLTDFFLVLM 176 (337)
T ss_dssp CSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHH-HHTTSSEEEEEE
T ss_pred chHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hhh-HHhhCCEEEEEE
Confidence 1246789999998776532 133332110 000 00000000 000 0000000 00
Q ss_pred Cch-HHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhc------CCcEeEEeCC
Q 037155 315 DPE-IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------AAKVLLMDEI 387 (1403)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~------~p~illLDEp 387 (1403)
+.. -+.. + . .......+...+.+ +..|..- ...+|+|++|++..+.+++. .|++++
T Consensus 177 d~~~~~~~-~-----~--i~~~i~~~~~ivvl-NK~Dl~~----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~---- 239 (337)
T 2qm8_A 177 LPGAGDEL-Q-----G--IKKGIFELADMIAV-NKADDGD----GERRASAAASEYRAALHILTPPSATWTPPVVT---- 239 (337)
T ss_dssp CSCC--------------CCTTHHHHCSEEEE-ECCSTTC----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----
T ss_pred cCCCcccH-H-----H--HHHHHhccccEEEE-EchhccC----chhHHHHHHHHHHHHHHhccccccCCCCCEEE----
Confidence 000 0000 0 0 00001111122233 2223110 13479999999999999887 588877
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 037155 388 STGLDSSTTFQICKFLKQMV 407 (1403)
Q Consensus 388 tsgLDs~t~~~i~~~L~~l~ 407 (1403)
+|++|......+++.|.+..
T Consensus 240 ~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 240 ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 239
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.00 E-value=9.5e-13 Score=153.56 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-----------------
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV----------------- 260 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~----------------- 260 (1403)
++++|+|+|||||||||+.|+|..+. .++ .-..+..|+|.++|.++....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~-~~~------------aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~ 71 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG-YKI------------AVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSN 71 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC-CCE------------EEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC-CcE------------EEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccH
Confidence 68999999999999999999998521 000 000135789989887664331
Q ss_pred -ccceEEEe---ccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHH
Q 037155 261 -PQRTCAYI---SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVT 336 (1403)
Q Consensus 261 -~~~~~~yv---~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1403)
..+.++++ +|+..+++..||.||..++... .....+.. +++. . .....
T Consensus 72 ~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~---------~~~~------~------~~~~l 123 (318)
T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFS---------HEVL------C------QRYLL 123 (318)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHH---------SHHH------H------HHEEE
T ss_pred HHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhc---------Cccc------c------CeEEE
Confidence 12345666 5665555667777776553110 00000000 0000 0 00000
Q ss_pred HHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 037155 337 DYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIV 416 (1403)
Q Consensus 337 ~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii 416 (1403)
+.++..+++.+..+... .+|||||||+..+++++.+|+++ ||| .++.+.++++. .+.++++
T Consensus 124 ~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~ 184 (318)
T 1nij_A 124 DGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYT 184 (318)
T ss_dssp EEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEE
T ss_pred CCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEE
Confidence 11122333433333332 38999999998888888888876 888 67778887764 4677777
Q ss_pred EEecCc
Q 037155 417 ALLQPA 422 (1403)
Q Consensus 417 ~~~q~~ 422 (1403)
+.|.+.
T Consensus 185 ~sh~~~ 190 (318)
T 1nij_A 185 VTHGDI 190 (318)
T ss_dssp CCSSCC
T ss_pred ecccCC
Confidence 766543
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.98 E-value=3.3e-11 Score=140.46 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=93.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh-------hhcce--eeEeecCCCCCCCCCHHHHH
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE-------TFARV--SGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~lTv~e~l 979 (1403)
++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++. +.|++|...+.|.++|+|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 68999999999999999999999996432 258899988775321 12333 45999998888999999999
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.+..... .+. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 205 ~~~~~~~--~d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~---- 255 (328)
T 3e70_C 205 QHAKARG--IDV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN---- 255 (328)
T ss_dssp HHHHHHT--CSE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT----
T ss_pred HHHHhcc--chh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH----
Confidence 8753211 000 01111222221111 1223334889999888888999555 43
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecC
Q 037155 1060 AAIVMRTVRNTV-DTGRTVVCTIHQ 1083 (1403)
Q Consensus 1060 ~~~i~~~l~~~~-~~g~tvi~~~H~ 1083 (1403)
.+++.++.+. ..+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 4445555554 348999999995
No 241
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.97 E-value=3.6e-11 Score=144.20 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=47.7
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 360 GISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
.+|+||+||+.+|++|...|.++++ +++|...+ ...+.+++..+..+.+++.+.......+.++++.
T Consensus 252 ~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 252 TLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 4999999999999999999999999 99999877 5555555554444556665443333334444433
No 242
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.97 E-value=3.3e-11 Score=138.29 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=83.5
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHh----
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAW---- 984 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~---- 984 (1403)
+++.++||.|++|||||||.+.|++.... .| . -.+.+.+|+|++.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999986431 11 0 02345666999988764 78888877521
Q ss_pred hh---CCCCCcHHHHHHHHHHHHHHcCCCC--c--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 037155 985 LR---LSSDVDTKKRKIFVDEVMELVELKP--L--RDALVGLPGVNGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1055 (1403)
Q Consensus 985 lr---~~~~~~~~~~~~~v~~~l~~l~L~~--~--~~~~vg~~~~~~LSgGqrqRl~IA--~aL~~~P~illLDEPTsgL 1055 (1403)
+. .+...+ .+...+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 223455566554320 0 0111111 1246999999999997 555 99999999999999
Q ss_pred CHHH
Q 037155 1056 DARA 1059 (1403)
Q Consensus 1056 D~~~ 1059 (1403)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
No 243
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=3.3e-10 Score=120.62 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=42.3
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 037155 1039 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1039 L~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1085 (1403)
.+.+|++|+||||++ ++|+.....+.+++++..++|+++|++||.+.
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 355999999999995 99999999999999998878999999999875
No 244
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.93 E-value=1.6e-09 Score=129.05 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=63.8
Q ss_pred CCCChhHhhHH------HHHHHHhcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 359 RGISGGQKKRV------TTGEMLVGA-AKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 359 rgLSGGqkqRv------sia~aL~~~-p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
..+|||||||+ ++|++++++ |++|+|||||+|||+.++..+.+.|+++.. +.+++++.|++ ++...+|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCE
Confidence 46999999988 567899999 999999999999999999999999988642 45788777765 46789999
Q ss_pred EEEEc
Q 037155 432 IILIS 436 (1403)
Q Consensus 432 IilL~ 436 (1403)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.91 E-value=1e-09 Score=131.14 Aligned_cols=148 Identities=22% Similarity=0.238 Sum_probs=87.0
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhh--cCCCC---CceeEEEEEEcCccC-Chhh---hcceeeEeecCCCCCCCCCHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYIEGDIKISGYPK-KQET---FARVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~lTv~ 976 (1403)
+-|++|++++|+||||||||||++.| .+..+ ++.-.+.+++++... .... ..+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence 45899999999999999999999954 45432 111235677777542 1110 0111121111
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLST-EQRKRLTIAVELV--ANPSIIFMDEPTS 1053 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg-GqrqRl~IA~aL~--~~P~illLDEPTs 1053 (1403)
++++.+- +. ...+. .+.+.+.-+.+++ .+|+++++||||+
T Consensus 242 -------------------------~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 -------------------------DALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp -------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred -------------------------hHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1111111 10 01222 2333444344443 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCeEEEEecC
Q 037155 1054 GLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1054 gLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~i~ll~~g 1101 (1403)
.+|+... ..+++.|++++++ |+|||+++|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9997533 6678888888754 999999999821 1235667988888763
No 246
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.89 E-value=5.8e-13 Score=164.14 Aligned_cols=177 Identities=12% Similarity=0.038 Sum_probs=104.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCC---------
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI--------- 968 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~--------- 968 (1403)
..+++++++.+++|+.++|+|||||||||||++|+|..++. +|.|.+.|.+.-.......++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 45789999999999999999999999999999999976543 6888998865211111233444444332
Q ss_pred -------------CCCCCCHHHHHHHHHhhhCCCC-CcHHHHHHHHHHHHHHcCCCC---------cccccccCCCCCCC
Q 037155 969 -------------HSPHVTLYESLLYSAWLRLSSD-VDTKKRKIFVDEVMELVELKP---------LRDALVGLPGVNGL 1025 (1403)
Q Consensus 969 -------------~~~~lTv~e~l~~~~~lr~~~~-~~~~~~~~~v~~~l~~l~L~~---------~~~~~vg~~~~~~L 1025 (1403)
+...++..|++.+...+..... ...- ....+.++++.+...+ ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 1234555554433222211100 0000 0001233344433311 0111000 01247
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcHHHHHhc
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1092 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 1092 (1403)
|+|||||++++. + | |+|||+.+...+++.|.++...|+|+++ ++|+++ ++...+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999887751 2 7 9999998877777777777666888875 889765 344444
No 247
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.88 E-value=3.5e-12 Score=153.26 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=95.8
Q ss_pred cccccccccccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-------hhhcce
Q 037155 887 EMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-------ETFARV 959 (1403)
Q Consensus 887 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~ 959 (1403)
.+++.++.++...+|+++ + .++|++++|+|||||||||||++|+|...+ .+|+|.+.|.+... ....+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccc
Confidence 344555555556688888 4 489999999999999999999999996542 25788888776531 112334
Q ss_pred eeEee---------cCCCC--CCC----CCHHHHHHHHHhhhC----CCCCcHHHHHHHHHHHHHHcCCCCcccccccCC
Q 037155 960 SGYCE---------QTDIH--SPH----VTLYESLLYSAWLRL----SSDVDTKKRKIFVDEVMELVELKPLRDALVGLP 1020 (1403)
Q Consensus 960 ~gyv~---------Q~~~~--~~~----lTv~e~l~~~~~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 1020 (1403)
+|+.+ |++.. ... .|+.+++.++..-.. ....+... +.+.+..+++.+.. .
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~----~i~rL~~lgl~~~~--~---- 290 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG----AVTRLRDMGIEPFL--I---- 290 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH----HHHHHHHHTCCHHH--H----
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH----HHHHHHHcCCcHHH--H----
Confidence 55544 87654 233 588888877542110 00111111 22346677886543 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 037155 1021 GVNGLSTEQRKRLTIAVELVANPSIIFM 1048 (1403)
Q Consensus 1021 ~~~~LSgGqrqRl~IA~aL~~~P~illL 1048 (1403)
...|||||+|| ||++|+.+|++..-
T Consensus 291 -~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 -SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp -HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred -HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 23699999999 99999999998763
No 248
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.87 E-value=4.9e-11 Score=143.24 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=87.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC---
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--- 260 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--- 260 (1403)
..+|+++ + .++|++++|+|||||||||||++|+|.+++ .+|+|.+.|.++....
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~---------------------~~g~I~~~ed~ie~~~~~~ 212 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS---------------------SERNILTVEDPIEFDIDGI 212 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC---------------------TTSCEEEEESSCCSCCSSS
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC---------------------CCCEEEEecccchhccCCc
Confidence 4578888 4 489999999999999999999999998854 4799999887663211
Q ss_pred ----ccceEEEec---------cCCCC--CCC----CCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHH
Q 037155 261 ----PQRTCAYIS---------QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321 (1403)
Q Consensus 261 ----~~~~~~yv~---------Q~d~~--~~~----lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~ 321 (1403)
..+.+++.+ |++.. +++ .|+++++.++..-+..-.. + .. .+
T Consensus 213 ~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------l---------h~-~~---- 272 (418)
T 1p9r_A 213 GQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------L---------HT-NT---- 272 (418)
T ss_dssp EEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------E---------CC-SS----
T ss_pred ceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------c---------ch-hh----
Confidence 112344433 77644 344 5788887764211100000 0 00 00
Q ss_pred HHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeE
Q 037155 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLL 383 (1403)
Q Consensus 322 ~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~ill 383 (1403)
.....+ .+..+|++... .. ..|||||+|| ||++|+.+|++..
T Consensus 273 ----------~~~~i~-rL~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 273 ----------AVGAVT-RLRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----------SHHHHH-HHHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----------HHHHHH-HHHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccC
Confidence 001112 34567776542 33 3499999999 9999999999865
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.86 E-value=8.6e-11 Score=135.88 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=79.6
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChh--hhc-ceeeEeecCCCCC-----CCCCHHH
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQE--TFA-RVSGYCEQTDIHS-----PHVTLYE 977 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~e 977 (1403)
.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 6553 4689998 88765422 112 2589999998653 68899 8
Q ss_pred HH--HHHH---h-hhCCCCCcHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHH
Q 037155 978 SL--LYSA---W-LRLSSDVDTKKRKIFVDEVMELVELKP-LRDALVGLPGVNGLSTEQRKRLTIAVE 1038 (1403)
Q Consensus 978 ~l--~~~~---~-lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~IA~a 1038 (1403)
++ .|.. . ++........+....++++++.++|.+ ..+.... .|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 87 4541 0 111110111122345889999999986 5666543 699989999999874
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.86 E-value=4.5e-10 Score=129.84 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=78.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCc--c-ceEEEe
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVP--Q-RTCAYI 268 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~--~-~~~~yv 268 (1403)
.+|++++|+||||||||||+|+|+ ..++ .+|+|.+ +|+..+.... + +.+||+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~---------------------~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v 220 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEEL---------------------RTQEVSEKTERGRHTTTGVRLIPFGKGSFV 220 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCC---------------------CCSCC---------CCCCEEEEEETTTEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhC---------------------cccccccccCCCCCceeeEEEEEcCCCcEE
Confidence 458999999999999999999999 7654 5799999 8876654321 1 258999
Q ss_pred ccCCCCC-----CCCCHHHHH--HhhcccccccchhhHHHHh-hHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHH
Q 037155 269 SQHDLHH-----GEMTVRETL--DFSGRCLGVGTRYELLAEL-SRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 340 (1403)
Q Consensus 269 ~Q~d~~~-----~~lTVrE~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il 340 (1403)
+|++.+. +.+|+ |++ .|. ... ++ |+ -.+.... .+....++..+
T Consensus 221 ~d~pg~~~~~l~~~lt~-e~l~~~f~-~~~----------~~~c~---~~~~~~~--------------~e~~~~v~~~l 271 (302)
T 2yv5_A 221 GDTPGFSKVEATMFVKP-REVRNYFR-EFL----------RYQCK---YPDCTHT--------------NEPGCAVKEAV 271 (302)
T ss_dssp ESSCCCSSCCGGGTSCG-GGGGGGCG-GGH----------HHHHH---STTCCSS--------------SCTTCHHHHHH
T ss_pred EECcCcCcCcccccCCH-HHHHHHHH-HHH----------HccCC---CCCCCCC--------------CCCCCHHHHHH
Confidence 9998543 68899 888 443 100 00 00 0000000 01122456678
Q ss_pred HHcCCcc-cccccccCccCCCCChhHhhHHHHHH
Q 037155 341 KLLGLDI-CADTMVGDEMRRGISGGQKKRVTTGE 373 (1403)
Q Consensus 341 ~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~ 373 (1403)
+.+||++ .++..... |||.++|++.|||
T Consensus 272 ~~~~L~~~~~~~~~~~-----ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 272 KNGEISCERYKSYLKI-----IKVYLEEIKELCR 300 (302)
T ss_dssp HTTSSCHHHHHHHHHH-----TTCCCTTHHHHSS
T ss_pred HcCCCCHHHHHHHHHH-----HHHHHHHHHHHhc
Confidence 8899986 67766654 9998899999986
No 251
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.9e-09 Score=127.31 Aligned_cols=164 Identities=15% Similarity=0.036 Sum_probs=84.6
Q ss_pred EEEEccCCCchHHHHHhhcCC-CCCceeEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCC
Q 037155 914 TALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDV 991 (1403)
Q Consensus 914 ~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~ 991 (1403)
+.|.||||+|||||+++|+|. ..+ ..|.+.++|.+... ......+++++|.+.+..... + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 899999999999999999993 332 25788888765432 112355788888664321110 0 0 000
Q ss_pred cHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 992 DTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071 (1403)
Q Consensus 992 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~ 1071 (1403)
... .+.+.++.+......+... .||| +..+|+++++|||++ ||..+...+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111111110 2565 788999999999999 99999999999999864
Q ss_pred hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCcchhHHHHHHHh
Q 037155 1072 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYAGPLGRESHKLIEYFEA 1123 (1403)
Q Consensus 1072 ~~g~tvi~~~H~~~~~~~~~~d~i~ll~~gG~~~~~g~~~~~~~~~~~~f~~ 1123 (1403)
.++++|+++|+++.......+| ...+...|+.. +++.++...
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHHH
Confidence 3789999999976311122222 24555666542 345555543
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.85 E-value=2.4e-11 Score=149.83 Aligned_cols=85 Identities=14% Similarity=0.147 Sum_probs=65.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..+++++++.+++|+.++|+|||||||||||++|+|.+++ .+|.|+++|..--......
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~---------------------~~giitied~~E~~~~~~~ 305 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP---------------------DAKVVSIEDTREIKLYHEN 305 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT---------------------TCCEEEEESSCCCCCCCSS
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC---------------------CCCEEEEcCcccccCCCCC
Confidence 3578999999999999999999999999999999999864 4799999886421222234
Q ss_pred eEEEeccCCCCCCCCCHHHHHHhhcc
Q 037155 264 TCAYISQHDLHHGEMTVRETLDFSGR 289 (1403)
Q Consensus 264 ~~~yv~Q~d~~~~~lTVrE~l~f~~~ 289 (1403)
.++++.|........|..+.+.-+.|
T Consensus 306 ~v~~~~r~~~~~~~~~~~~~l~~~LR 331 (511)
T 2oap_1 306 WIAEVTRTGMGEGEIDMYDLLRAALR 331 (511)
T ss_dssp EEEEECBCCSSSCCBCHHHHHHTTGG
T ss_pred eEEEEeecccccCCcCHHHHHHHhhc
Confidence 57777776554445688888876654
No 253
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=2.1e-09 Score=114.38 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=39.3
Q ss_pred hcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 037155 376 VGAAKVLLMDEIST-GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 376 ~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 424 (1403)
+.+|++|+||||++ ++|+.....+.+.+..... .++++|++.+.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 45899999999985 9999999999998887654 478888888777644
No 254
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.81 E-value=9.1e-12 Score=142.08 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=93.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc--
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP-- 261 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~-- 261 (1403)
..+++++++.+++| ++|+||||||||||+++|+|.+. .|.|.++|.++.....
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----------------------~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----------------------LNFISVKGPELLNMYVGE 87 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----------------------CEEEEEETTTTCSSTTHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----------------------CCEEEEEcHHHHhhhhhH
Confidence 45899999999999 99999999999999999999863 3789999977644221
Q ss_pred -cceEEEeccCC-CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHH
Q 037155 262 -QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYV 339 (1403)
Q Consensus 262 -~~~~~yv~Q~d-~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (1403)
.+.+++++|+. .+.|.+++.|++.+.+..++. . +. +
T Consensus 88 ~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~--------------~--------~~------------------~-- 125 (274)
T 2x8a_A 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--------------R--------ET------------------G-- 125 (274)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC--------------C--------cc------------------h--
Confidence 24566777653 445555666666543211000 0 00 0
Q ss_pred HHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 037155 340 LKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEIST------------GLDSSTTFQICKFL 403 (1403)
Q Consensus 340 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEpts------------gLDs~t~~~i~~~L 403 (1403)
.+....+..+ ..|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 126 ----~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 126 ----ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp -----CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 0111112222 239999999999999999999975 88864 23666666666543
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.81 E-value=1.3e-10 Score=126.88 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=27.6
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999853
No 256
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.77 E-value=4.1e-08 Score=117.22 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=46.4
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEecCc------------------hhHH
Q 037155 377 GAAKVLLMDEISTGLDSSTT------------FQICKFLKQMVHIMDVTMIVALLQPA------------------PETY 426 (1403)
Q Consensus 377 ~~p~illLDEptsgLDs~t~------------~~i~~~L~~l~~~~~~tvii~~~q~~------------------~~~~ 426 (1403)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 47999999999999997543 56888899998888999998877511 2235
Q ss_pred hhcCEEEEEcCCe
Q 037155 427 DLFDDIILISEGQ 439 (1403)
Q Consensus 427 ~~fD~IilL~~G~ 439 (1403)
..+|.++.|+.|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6689999887753
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.76 E-value=1.2e-11 Score=134.31 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHH-HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEEEcC
Q 037155 371 TGE-MLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIILISE 437 (1403)
Q Consensus 371 ia~-aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~IilL~~ 437 (1403)
.++ +++.+|++++|||+|+++|..+...|.+.|....+... +.| +. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~------~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME------SSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT------GGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------Hhh---cc-CCceEEEECCC
Confidence 455 67889999999999999999999999999987765321 111 12 67899988764
No 258
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=1.2e-11 Score=146.94 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=115.4
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCC----------CCceeEEEEEEcCccCCh----hhhccee---eEeecCCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYIEGDIKISGYPKKQ----ETFARVS---GYCEQTDIH 969 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~ 969 (1403)
.+++|..++|+|+||||||||+++|+|.. +..+..|.+.++|..... ...++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45789999999999999999999999932 112457999998843211 0111222 467777777
Q ss_pred CCCCCHHHHH--HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CE
Q 037155 970 SPHVTLYESL--LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP--SI 1045 (1403)
Q Consensus 970 ~~~lTv~e~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P--~i 1045 (1403)
.+..+..|.+ .|.+.++.. +.++..++..+ + ..+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 7777766655 444433321 11111122211 1 1122355442 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCeEE-EEecCc-EEEEecCCCc
Q 037155 1046 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELL-LMKRGG-RVIYAGPLGR 1112 (1403)
Q Consensus 1046 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~i~-ll~~gG-~~~~~g~~~~ 1112 (1403)
+++|||+.++|+......++.++.. .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 9999999999999999999999998 76788865 99875 6788999998 7765 6 7777776643
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.74 E-value=4.7e-11 Score=130.48 Aligned_cols=148 Identities=12% Similarity=0.085 Sum_probs=78.6
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCC-ceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|......... ..+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~~~~~~~-------------------~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PRGLLPRK-------------------G 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GGTCGGGT-------------------T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-HhcccccC-------------------C
Confidence 478999999999999999999999996431 22346666666544321111 01100000 0
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 037155 987 LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1065 (1403)
Q Consensus 987 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA-~aL~~~P~illLDEPTsgLD~~~~~~i~~ 1065 (1403)
.+...+... ..+.+..+...+..+......+ .++|+||+||+++| ++++.++.++++|||.- .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 000011111 1222222211111111222222 25799999999988 77788888877888731 1
Q ss_pred HHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 037155 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1094 (1403)
Q Consensus 1066 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1094 (1403)
.+.+. --.++++.|..+..+...+.|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 11222 236777777655434444444
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=1.9e-08 Score=103.66 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=33.3
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEEEecCch
Q 037155 376 VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVT-MIVALLQPAP 423 (1403)
Q Consensus 376 ~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t-vii~~~q~~~ 423 (1403)
+.+|++|++|||++ +|...+..+.+.+..+... +++ +|++.+.+..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~ 127 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHH
Confidence 45789999999998 6655588888888877653 566 6666654443
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=2.1e-11 Score=144.77 Aligned_cols=180 Identities=12% Similarity=0.114 Sum_probs=114.4
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhcccc-ccchhhcccchhhhhhhccCCCcceEEEECCccCCC----CCccceE--
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLH-ENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE----FVPQRTC-- 265 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~----~~~~~~~-- 265 (1403)
.+++|..++|+|+||||||||+|+|+|... .... .-+-...+.+|.|.++|..++. +.+++.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~ 85 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPA 85 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------CCceeecceeeeeeeCCcchhhhhhhcccccccCc
Confidence 567899999999999999999999999421 0000 0000124578999998853211 2233443
Q ss_pred -EEeccCCCCCCCCCHHHHH--HhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchhHHHHHHHHH
Q 037155 266 -AYISQHDLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKL 342 (1403)
Q Consensus 266 -~yv~Q~d~~~~~lTVrE~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 342 (1403)
.++.+.+-+...++..|++ .|-+.++. +|.++..
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~-------------------------------------------~d~il~V 122 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRA-------------------------------------------VDAIYQV 122 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTT-------------------------------------------CSEEEEE
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHH-------------------------------------------HHHHHHH
Confidence 4677777777766665544 22111100 0001111
Q ss_pred cCCcccccccccCccCCCCChhHhhHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEe
Q 037155 343 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAA--KVLLMDEISTGLDSSTTFQICKFLKQM-VHIMDVTMIVALL 419 (1403)
Q Consensus 343 lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l-~~~~~~tvii~~~ 419 (1403)
+.... |.. ...+||+. +| +++++|||+.++|.......++.++.. .+ .+.|++ .
T Consensus 123 vd~~~--d~~-----i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---s 179 (392)
T 1ni3_A 123 VRAFD--DAE-----IIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---M 179 (392)
T ss_dssp EECCC--TTC-----SSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---H
T ss_pred Hhccc--cce-----eeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---c
Confidence 11111 222 23367653 88 999999999999999999999988876 43 455542 4
Q ss_pred cCchhHHhhcCEEE-EEcCC-eEEEecChhh
Q 037155 420 QPAPETYDLFDDII-LISEG-QIVYHGPRDN 448 (1403)
Q Consensus 420 q~~~~~~~~fD~Ii-lL~~G-~iv~~G~~~~ 448 (1403)
|...++.+++|++. +|.+| ++++.|+.++
T Consensus 180 h~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 180 KAKKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred ccHHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 45567888999999 99999 9888776543
No 262
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.68 E-value=1.8e-10 Score=135.26 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=96.7
Q ss_pred ceeeeceEEEEeCC-------eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccC
Q 037155 184 VQILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHEL 256 (1403)
Q Consensus 184 ~~iL~~vs~~i~~G-------e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~ 256 (1403)
..++++++..+++| +.++|.||||+|||||+++|+|.+.... .+.+|.+..++.++
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~-----------------~~~sg~~~~~~~~l 93 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI-----------------HVTSGPVLVKQGDM 93 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE-----------------EEEETTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE-----------------EEEechHhcCHHHH
Confidence 35777888888776 8899999999999999999999873211 11355555554433
Q ss_pred CCC---CccceEEEeccCCCCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHHHHHHHhhccchh
Q 037155 257 NEF---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAFMKAVAVAGQETS 333 (1403)
Q Consensus 257 ~~~---~~~~~~~yv~Q~d~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 333 (1403)
... ..++.+.++.|.+.+.+ ++.|++.......+. .+..... ...
T Consensus 94 ~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~-----------------~i~~~~~-------------~~~ 141 (334)
T 1in4_A 94 AAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQI-----------------DIMIGKG-------------PSA 141 (334)
T ss_dssp HHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCC-----------------CC---------------------
T ss_pred HHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhccc-----------------ceeeccC-------------ccc
Confidence 211 12356999999877665 788888432111100 0000000 000
Q ss_pred HHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 037155 334 LVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMD 411 (1403)
Q Consensus 334 ~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 411 (1403)
..++..+..++|.. +++.++. ||+|+|||+.++ .+||+.+..++.+.|++.++..+
T Consensus 142 ~~i~~~l~~~~li~-at~~~~~-----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 142 KSIRIDIQPFTLVG-ATTRSGL-----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp -------CCCEEEE-EESCGGG-----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCeEEEE-ecCCccc-----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 01122334455544 6666654 999999998554 78899999999999998876544
No 263
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.4e-08 Score=119.75 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=35.1
Q ss_pred HhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 037155 375 LVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPA 422 (1403)
Q Consensus 375 L~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 422 (1403)
+.++|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence 778999999999999 99999999999998753 2567777777664
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=3.7e-09 Score=122.13 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=50.0
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCc---cceEE
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVP---QRTCA 266 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~ 266 (1403)
.+.+|++++|+||||||||||||+|+|...+ .+|+|.+ +|++++.... .+.++
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~---------------------~~G~i~~~~~~g~~~t~~~~~~~~~~~g 223 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL---------------------RVSEVSEKLQRGRHTTTTAQLLKFDFGG 223 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC---------------------C-------------CCCSCCEEECTTSC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc---------------------cccceecccCCCCCceeeeEEEEcCCCC
Confidence 3457999999999999999999999998864 5799999 8877654321 13589
Q ss_pred EeccCCC----------------CCCCCCHHHHHHhh
Q 037155 267 YISQHDL----------------HHGEMTVRETLDFS 287 (1403)
Q Consensus 267 yv~Q~d~----------------~~~~lTVrE~l~f~ 287 (1403)
||.|++. ++|++|+ ||+.|.
T Consensus 224 ~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 224 YVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp EEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSST
T ss_pred EEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCC
Confidence 9999974 5888899 988885
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.64 E-value=7.3e-10 Score=128.56 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=57.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCccceEEEeccC
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVPQRTCAYISQH 271 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~ 271 (1403)
++|++++|+||||||||||+++|+|.+.. .+.+|+|.+ +|..... ..++.++++ |+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~-------------------~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~ 136 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSR-------------------WPEHRRVELITTDGFLHPN-QVLKERGLM-KK 136 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTT-------------------STTCCCEEEEEGGGGBCCH-HHHHHHTCT-TC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-------------------CCCCCeEEEEecCCccCcH-HHHHhCCEe-ec
Confidence 88999999999999999999999998751 024799999 8865432 123457888 77
Q ss_pred CCCCCCCCHHHHHHhhc
Q 037155 272 DLHHGEMTVRETLDFSG 288 (1403)
Q Consensus 272 d~~~~~lTVrE~l~f~~ 288 (1403)
..+++.+|+.+++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 137 KGFPESYDMHRLVKFVS 153 (308)
T ss_dssp TTSGGGBCHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHH
Confidence 77778889999997753
No 266
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.61 E-value=9e-12 Score=135.14 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 037155 1035 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1035 IA~-aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~ll~ 1099 (1403)
+++ +++.+|++++|||||+++|..+...|.+.|.+..+. +...|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888899999999999999999998887542 2334621 4689887764
No 267
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.60 E-value=2e-11 Score=139.18 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=87.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---hhcceeeEeecCC-CCCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---TFARVSGYCEQTD-IHSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~ 972 (1403)
...+++++++.+++| ++|+||||+|||||+++|+|.... |.+.++|.+.... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999996542 6889998765321 2234577888764 44566
Q ss_pred CCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 973 VTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
+++.|++...+..+.. .. .. .+....+... ..|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r~~-----~~----~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD-----RE----TG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccCC-----Cc----ch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 6666666542211100 00 00 1122233332 259999999999999999999975 8886
Q ss_pred C
Q 037155 1053 S 1053 (1403)
Q Consensus 1053 s 1053 (1403)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 268
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=3.4e-09 Score=121.92 Aligned_cols=118 Identities=20% Similarity=0.201 Sum_probs=65.6
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChh-hhcce-eeEeecCCCCCC----CCCHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQE-TFARV-SGYCEQTDIHSP----HVTLY 976 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~lTv~ 976 (1403)
+.+.+|++++|+||||||||||+|+|+|.... .+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 34568999999999999999999999997542 4688888 77654321 12222 799999987665 6899
Q ss_pred HHHH--HHHh------hhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 037155 977 ESLL--YSAW------LRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRK 1031 (1403)
Q Consensus 977 e~l~--~~~~------lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1031 (1403)
|++. |... ++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 111110111112234789999999976433221 146667766
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.60 E-value=4.4e-09 Score=117.23 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=43.6
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHH-------HHHhcCeEEEEec
Q 037155 1041 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELLLMKR 1100 (1403)
Q Consensus 1041 ~~P~illLDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------~~~~~d~i~ll~~ 1100 (1403)
.+|+++++|+|++.+ |+.....++..+.++ .+.|+|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 554444555555555 45699999999986521 3567899999974
No 270
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=7.8e-09 Score=118.92 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=43.6
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEE---CCccCCCCCc-cce-EEE
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITY---CGHELNEFVP-QRT-CAY 267 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~y 267 (1403)
.+.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..+.... .+. .+|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---------------------~~G~I~~~~~~G~~tt~~~~~~~~~~g~ 227 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGL---------------------RTNEISEHLGRGKHTTRHVELIHTSGGL 227 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------------------------CCCCCEEEETTEE
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccc---------------------cccceeeecCCCcccccHHHHhhcCCEE
Confidence 3568999999999999999999999998754 4799988 7765543221 122 799
Q ss_pred eccCCCCCC----CCCHHHHHH
Q 037155 268 ISQHDLHHG----EMTVRETLD 285 (1403)
Q Consensus 268 v~Q~d~~~~----~lTVrE~l~ 285 (1403)
+.|++.+.. .+|+ |+|.
T Consensus 228 v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 228 VADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp EESSCSCSSCCCTTCCH-HHHG
T ss_pred EecCCCccccccccCCH-HHHH
Confidence 999986655 6899 9984
No 271
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.58 E-value=3e-10 Score=133.35 Aligned_cols=152 Identities=15% Similarity=0.083 Sum_probs=92.6
Q ss_pred ccceEeeeeEEEEeCC-------eEEEEEccCCCchHHHHHhhcCCCCC--ceeEEEEEEcCccCCh--hh-hcceeeEe
Q 037155 896 DRLQLLHSVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKKQ--ET-FARVSGYC 963 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~-~~~~~gyv 963 (1403)
+...+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... .. .++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3445788888888876 88999999999999999999985421 1234544444433211 01 13468999
Q ss_pred ecCCCCCCCCCHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 037155 964 EQTDIHSPHVTLYESLLYSAWLRLSSDV--DTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVA 1041 (1403)
Q Consensus 964 ~Q~~~~~~~lTv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~ 1041 (1403)
.|.+.+.+ ++.|++........ .+. ......+.+++.++.+++.. +.+. +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877655 78888754322111 010 01111122344444455543 3333 236999999998655
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
.+||+.+...+.+.|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 78888888999999998764
No 272
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.57 E-value=6.6e-10 Score=128.91 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=66.4
Q ss_pred eEeeeeEEEE-------------------eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChhhh
Q 037155 899 QLLHSVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQETF 956 (1403)
Q Consensus 899 ~iL~~vs~~i-------------------~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~ 956 (1403)
.++++|++.+ ++|+++||+||||||||||+++|+|.....+..|+|.+ +|...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 4677888777 89999999999999999999999995330012588888 88775432 3
Q ss_pred cceeeEeecCCCCCCCCCHHHHHHHHHhhh
Q 037155 957 ARVSGYCEQTDIHSPHVTLYESLLYSAWLR 986 (1403)
Q Consensus 957 ~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr 986 (1403)
++.+|++ |...+.+.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 4557888 8777778899999998776554
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.57 E-value=2.6e-08 Score=121.80 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=106.5
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-EEEEcCccCChhhhc-ceeeEeecCCCCCCCCCHH
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKKQETFA-RVSGYCEQTDIHSPHVTLY 976 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~Q~~~~~~~lTv~ 976 (1403)
..|+++++-+++|+++.|.|++|+|||||+..|++..... .| .+.+.+...+..... |..+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 3577777779999999999999999999999998743210 12 233333222221111 11000000 000
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1054 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~--~~P~illLDEPTsg 1054 (1403)
+. ++.. .....+ ...+.+.++.++..++.-. . ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~------l~~g-~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QN------LRTG-KLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HH------HHTS-CCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HH------HhcC-CCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 01 1111 122222 2334555555544332211 1 1268999987 5667776 68999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCeEEEEecC
Q 037155 1055 LDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELLLMKRG 1101 (1403)
Q Consensus 1055 LD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~i~ll~~g 1101 (1403)
.+. .....+.+.|+.++++ |++||+++| + |.. .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 742 3446778888888754 999999999 2 431 356679999999864
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.56 E-value=6.5e-08 Score=111.55 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred CChhHhhHH---HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 361 ISGGQKKRV---TTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 361 LSGGqkqRv---sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
.|||+.+++ ++++++..+|+++++|+|.. ......+++.|+.+.+
T Consensus 166 ~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 166 SEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp STTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 689999999 89999999999999999963 4555667776766544
No 275
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=1.1e-08 Score=118.24 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=63.7
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEE---cCccCChhh--h-cceeeEeecCCC-------------
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKKQET--F-ARVSGYCEQTDI------------- 968 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~Q~~~------------- 968 (1403)
+.+|++++|+||||||||||+++|+|...+ ..|+|.+ +|.+..... . .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 346899999999999999999999997653 4799998 887653211 1 135899999874
Q ss_pred ---CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCC-Cccccc
Q 037155 969 ---HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELK-PLRDAL 1016 (1403)
Q Consensus 969 ---~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 1016 (1403)
++|++|+ ||+.|... .. . .+....+.++++.++|. +..+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~-~----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NH-V----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CS-S----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cC-C----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788999 98887531 11 1 11223478999999995 555554
No 276
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.52 E-value=3.2e-07 Score=112.09 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCChhHhhHHHHHHHHh--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEec---------
Q 037155 360 GISGGQKKRVTTGEMLV--GAAKVLLMDEISTGLDS--------STTFQICKFLKQMVHIMDVTMIVALLQ--------- 420 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~--~~p~illLDEptsgLDs--------~t~~~i~~~L~~l~~~~~~tvii~~~q--------- 420 (1403)
++|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..+.++|++.|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 48999886 5667666 68999999999998743 233667888999998888888876551
Q ss_pred --Cc-------hhHHhhcCEEEEEcCCeE
Q 037155 421 --PA-------PETYDLFDDIILISEGQI 440 (1403)
Q Consensus 421 --~~-------~~~~~~fD~IilL~~G~i 440 (1403)
|. ..+...+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22 146678999999987653
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.51 E-value=5.6e-07 Score=100.06 Aligned_cols=61 Identities=21% Similarity=0.123 Sum_probs=45.6
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh-------HHhhcCEEEEEcC
Q 037155 377 GAAKVLLMDEISTGL--DSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE-------TYDLFDDIILISE 437 (1403)
Q Consensus 377 ~~p~illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~-------~~~~fD~IilL~~ 437 (1403)
.+|+++++|++++.+ |.....+++..|.++++..+.|++++.|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665566777777777777788888876654421 4577899999864
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.47 E-value=4e-07 Score=107.10 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 037155 1031 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1086 (1403)
Q Consensus 1031 qRl~IA~aL~~~--P~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1086 (1403)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223444555554 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecCcEEEEecC
Q 037155 1087 ----------DIFEAFDELLLMKRGGRVIYAGP 1109 (1403)
Q Consensus 1087 ----------~~~~~~d~i~ll~~gG~~~~~g~ 1109 (1403)
.+...+|.++.+.+ +++...|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467888888875 44443443
No 279
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.44 E-value=2.3e-08 Score=126.72 Aligned_cols=159 Identities=22% Similarity=0.247 Sum_probs=98.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQR 263 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 263 (1403)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... .
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--------------------~~~~~~~~~~~~~~~~--p 104 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--------------------TLEDILVFPNPEDENM--P 104 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--------------------SCEEEEEECCTTCTTS--C
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--------------------cCCeEEEeCCcccccC--C
Confidence 45789999999999999999999999999999999988643 2488888887765543 4
Q ss_pred eEEEeccCC----------------------CCCCCCCHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCchHHHH
Q 037155 264 TCAYISQHD----------------------LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPEIDAF 321 (1403)
Q Consensus 264 ~~~yv~Q~d----------------------~~~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~ 321 (1403)
.++|+++.. +.+..+++.+|+.... +... +.+.+..
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~--------------------~~~~v~~- 162 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRT--------------------KAPFIDA- 162 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECC-TTCS--------------------SCCEEEC-
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeecc-ccCC--------------------CCCEEEc-
Confidence 588887642 1222222222221110 0000 0000000
Q ss_pred HHHHHhhccchhHHHHHHHHHcCCcccccccccCccCCCCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH
Q 037155 322 MKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICK 401 (1403)
Q Consensus 322 ~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~ 401 (1403)
.. ....+.+|.-..... ...++|+|++|++..+.....++.+||+||+.. |++.....+.+
T Consensus 163 ----------~~---~~~~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~ 223 (604)
T 3k1j_A 163 ----------TG---AHAGALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLT 223 (604)
T ss_dssp ----------TT---CCHHHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHH
T ss_pred ----------CC---CCHHhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHH
Confidence 00 001122332111111 124599999999999999999999999999988 88888777777
Q ss_pred HHHH
Q 037155 402 FLKQ 405 (1403)
Q Consensus 402 ~L~~ 405 (1403)
.|.+
T Consensus 224 ~Le~ 227 (604)
T 3k1j_A 224 AMQE 227 (604)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7653
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.43 E-value=5.5e-08 Score=112.13 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=72.8
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHh
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAW 984 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 984 (1403)
++..++|++++|+|+|||||||++..|++.... ..|++.+.+.+.... + ..|.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~------~-------------a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA------A-------------AIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH------H-------------HHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH------H-------------HHHH------
Confidence 444678999999999999999999999985431 124566554432100 0 0011
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 037155 985 LRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAAA 1061 (1403)
Q Consensus 985 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl---~IA~aL~~~P~illLDEPTsgLD~~~~~ 1061 (1403)
...+.+.+++... ...|+|+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 2233444555321 14688999999 89999999999999999974 33444
Q ss_pred HHHHHHHHH
Q 037155 1062 IVMRTVRNT 1070 (1403)
Q Consensus 1062 ~i~~~l~~~ 1070 (1403)
.+++.++++
T Consensus 203 ~l~~eL~~l 211 (306)
T 1vma_A 203 NLMEELRKV 211 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.42 E-value=3.1e-07 Score=105.55 Aligned_cols=118 Identities=20% Similarity=0.115 Sum_probs=79.4
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHH
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLY 981 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 981 (1403)
+++++. +|++++++|+||+||||++..|++.... ..|++.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------------------H-HHH--
Confidence 567777 8999999999999999999999995431 13567776654321100 0 000
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 037155 982 SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1060 (1403)
Q Consensus 982 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP-TsgLD~~~~ 1060 (1403)
..+.+..++..... + .+-...+.+|.+|+.+...+++++|+||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01123344432211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 037155 1061 AIVMRTVRNT 1070 (1403)
Q Consensus 1061 ~~i~~~l~~~ 1070 (1403)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887776665
No 282
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.42 E-value=6.6e-08 Score=117.42 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=47.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCC
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNE 258 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~ 258 (1403)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++| .+|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---------------------~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP---------------------DLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC---------------------CTTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC---------------------CCCEEEECCEEccc
Confidence 3579999999999 99999999999999999999999865 58999999987654
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.34 E-value=1.3e-06 Score=100.32 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=36.0
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 037155 363 GGQKKRVTTGEMLVGAAKVLLMDEI-STGLDSSTTFQICKFLKQM 406 (1403)
Q Consensus 363 GGqkqRvsia~aL~~~p~illLDEp-tsgLDs~t~~~i~~~L~~l 406 (1403)
-.+-+|.+++++...+++++++||| ++|+|.....++.+..+..
T Consensus 165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 3455788999988899999999999 9999988877777766543
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.34 E-value=6.2e-07 Score=103.07 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=81.0
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS 988 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~ 988 (1403)
++|++++++|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999985421 012 12455555442 234445443321
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 037155 989 SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1068 (1403)
Q Consensus 989 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~ 1068 (1403)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112221100 1222 23344555 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCeEEEEecCcEEEE
Q 037155 1069 NTV---DTGRTVVC-TIHQPSIDIFEAFDELLLMKRGGRVIY 1106 (1403)
Q Consensus 1069 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~i~ll~~gG~~~~ 1106 (1403)
-+. ..+.++++ ++|..+ ++.+.++++..+..+| ++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEE
Confidence 332 12334444 478754 5666677665555444 443
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.33 E-value=2.6e-08 Score=107.84 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=49.9
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCC---CccceEEE
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEF---VPQRTCAY 267 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~y 267 (1403)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++...... ..++.++|
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------------------------EIKISISHTTRPKRPGDQEGVDY 55 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------------------------SEEECCCEECSCCCTTCCBTTTB
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------------------------CeEEeceeccCCCchhHhcCceE
Confidence 46678999999999999999999999999852 233344332221 12356889
Q ss_pred eccCCCCCCCCCHHHHHHhhc
Q 037155 268 ISQHDLHHGEMTVRETLDFSG 288 (1403)
Q Consensus 268 v~Q~d~~~~~lTVrE~l~f~~ 288 (1403)
++|++..++.+++.+++.+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 56 FFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp EECCHHHHHHHHHHTCEEEEE
T ss_pred EeccHHHHHHHHhcCcEEeee
Confidence 999887777777777765543
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.31 E-value=1.3e-08 Score=124.35 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=91.9
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcC----CCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCC-----
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHV----- 973 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l----- 973 (1403)
.+++.+.++..+.|.|++||||||+++.|.. ..++ |++.+.+.+.+...+.. ...+|++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~--------~~~lPhl~~~Vv 226 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV--------YEGIPHLLTEVV 226 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG--------GTTCTTBSSSCB
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh--------hccCCcccceee
Confidence 4677888899999999999999999999865 2222 33333333322111111 0011221
Q ss_pred -CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccc--cccCCCCCCCCHHHHHHH----------HHHHHHh
Q 037155 974 -TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDA--LVGLPGVNGLSTEQRKRL----------TIAVELV 1040 (1403)
Q Consensus 974 -Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~vg~~~~~~LSgGqrqRl----------~IA~aL~ 1040 (1403)
.+.+....-.++ ..+.+++ .+.++..|+.+..+. .+. ..+|+||+|+. .+++++.
T Consensus 227 td~~~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~ 294 (512)
T 2ius_A 227 TDMKDAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLK 294 (512)
T ss_dssp CSHHHHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCC
T ss_pred cCHHHHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccc
Confidence 122222111111 1223333 367888888765432 111 13677776642 3556667
Q ss_pred hCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 037155 1041 ANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1085 (1403)
Q Consensus 1041 ~~P~-illLDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1085 (1403)
..|. ++++||++.-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 7898 78999999988843 3455566665543 3779999999997
No 287
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.30 E-value=8e-08 Score=103.04 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037155 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1070 (1403)
Q Consensus 1031 qRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~ 1070 (1403)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888753
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.30 E-value=1.2e-06 Score=100.73 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|++++++|||||||||++..|++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999875
No 289
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.30 E-value=1.1e-08 Score=129.75 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=99.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCC-------
Q 037155 896 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDI------- 968 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~------- 968 (1403)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 3456889999999999999999999999999999999965432 23788888876542 3445788876431
Q ss_pred ---------------CCCCCCHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH
Q 037155 969 ---------------HSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRL 1033 (1403)
Q Consensus 969 ---------------~~~~lTv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1033 (1403)
.+..+++.+|+.....-..+...-.. . ....-+.+|..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 11111221211110000000000000 0 00011122221111111 136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 1034 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1069 (1403)
Q Consensus 1034 ~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~ 1069 (1403)
..++...+++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899988888888875
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.28 E-value=2.3e-10 Score=128.80 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=81.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 972 (1403)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..|.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345789999999999 99999999999999999998653 4677888754311 112234566777643 4567
Q ss_pred CCHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037155 973 VTLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1051 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP 1051 (1403)
+++.|++......+.. ......+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777777432221111 00011222222333322 3788999999999999999986 4543
No 291
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=1.3e-09 Score=124.63 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=81.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDI-HSPH 972 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 972 (1403)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..|.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 345789999999999 89999999999999999998654 4678888754321 112234667777643 4567
Q ss_pred CCHHHHHHHHHhhhCCC-CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 973 VTLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 973 lTv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
+++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 78878774332211100 0011122222222221 4789999999999999999875
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.24 E-value=4.7e-08 Score=105.79 Aligned_cols=64 Identities=25% Similarity=0.204 Sum_probs=41.0
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCC
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVT 974 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 974 (1403)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHH
Confidence 56678999999999999999999999999642 23444432211 122445789998754443333
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.23 E-value=2.2e-06 Score=100.73 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=49.1
Q ss_pred HHHHHHHHhcC--CcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEEEecCch------
Q 037155 368 RVTTGEMLVGA--AKVLLMDEISTGL----------DS---STTFQICKFLKQM---VHIMDVTMIVALLQPAP------ 423 (1403)
Q Consensus 368 Rvsia~aL~~~--p~illLDEptsgL----------Ds---~t~~~i~~~L~~l---~~~~~~tvii~~~q~~~------ 423 (1403)
-+.++++++.. |+++++||+++.+ |+ ..+..+.+.++++ ++..+.|+|++.|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45677877754 9999999999998 33 2222344444444 46668888776553321
Q ss_pred ---------hHHhhcCEEEEEcCCeEEEecC
Q 037155 424 ---------ETYDLFDDIILISEGQIVYHGP 445 (1403)
Q Consensus 424 ---------~~~~~fD~IilL~~G~iv~~G~ 445 (1403)
.+...+|.++.+..++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1446789888888777665553
No 294
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.23 E-value=1.5e-07 Score=114.29 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=45.0
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK 952 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 952 (1403)
.+|+|||++|++ +++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 479999999999 99999999999999999999996543 3689999998754
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.22 E-value=2.9e-09 Score=121.60 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=53.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++.....
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----------------------~~~i~~~~~~~~~~~~~~~ 117 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----------------------VPFITASGSDFVEMFVGVG 117 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----------------------CCEEEEEHHHHHHSTTTHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----------------------CCEEEecHHHHHHHHhhHH
Confidence 5788999999999 89999999999999999999762 5788888765422111
Q ss_pred cceEEEeccCC-CCCCCCCHHHHHH
Q 037155 262 QRTCAYISQHD-LHHGEMTVRETLD 285 (1403)
Q Consensus 262 ~~~~~yv~Q~d-~~~~~lTVrE~l~ 285 (1403)
.+.+++++|+. ...+.+++.|++.
T Consensus 118 ~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 118 AARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCcEEehhhhH
Confidence 12345555543 2344555555553
No 296
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.17 E-value=4.3e-09 Score=118.40 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=51.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.....
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----------------------~~~i~~~~~~~~~~~~~~~ 93 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----------------------VPFITASGSDFVEMFVGVG 93 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----------------------CCEEEEEHHHHHHSCTTHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEeeHHHHHHHHhhHH
Confidence 5789999999999 99999999999999999999762 5788888765422111
Q ss_pred cceEEEeccCC-CCCCCCCHHHHH
Q 037155 262 QRTCAYISQHD-LHHGEMTVRETL 284 (1403)
Q Consensus 262 ~~~~~yv~Q~d-~~~~~lTVrE~l 284 (1403)
.+.++++.|+. ...+.+++.|++
T Consensus 94 ~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 94 AARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHHHHHHhcCCeEEEehhh
Confidence 12344455542 233444555555
No 297
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.16 E-value=3.4e-07 Score=98.13 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=36.0
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQ 405 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 405 (1403)
|..-.++++.+|++++.+|+++++| ||++|.....++.+.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3333345678999999999999999 999999999999988865
No 298
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.14 E-value=2.1e-06 Score=100.64 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=28.3
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|-+++|+++.|.||||||||||+..+++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999998763
No 299
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.12 E-value=3.5e-07 Score=111.86 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHcCCccccc--ccccCccCCCCChhHhhHH----------HHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHH
Q 037155 338 YVLKLLGLDICAD--TMVGDEMRRGISGGQKKRV----------TTGEMLVGAAK-VLLMDEISTGLDSSTTFQICKFLK 404 (1403)
Q Consensus 338 ~il~~lgL~~~~d--t~vg~~~~rgLSGGqkqRv----------sia~aL~~~p~-illLDEptsgLDs~t~~~i~~~L~ 404 (1403)
..++..|+.+..+ ..+. ..+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~ 322 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIA 322 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHH
Confidence 3456666655322 2222 23799998863 24556677887 88999999988843 344555555
Q ss_pred HH---HHhCCcEEEEEEecCchh
Q 037155 405 QM---VHIMDVTMIVALLQPAPE 424 (1403)
Q Consensus 405 ~l---~~~~~~tvii~~~q~~~~ 424 (1403)
++ .+..|.++|++.+.|+.+
T Consensus 323 ~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 323 RLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp HHHHHCGGGTEEEEEEESCCCTT
T ss_pred HHHHHhhhCCcEEEEEecCCccc
Confidence 44 444577888888887733
No 300
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.01 E-value=3.4e-06 Score=90.75 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 1033 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1071 (1403)
Q Consensus 1033 l~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~ 1071 (1403)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35589999999999999 99999999999988887654
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.00 E-value=1.6e-06 Score=95.96 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=22.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHh-cccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLH 222 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~La-G~~~ 222 (1403)
.+..+++|+.+++|++++|+||||||||||+++|+ |.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35778999999999999999999999999999999 9864
No 302
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.96 E-value=4.3e-06 Score=101.92 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 037155 1027 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1085 (1403)
Q Consensus 1027 gGqrqRl~IA~aL~~~P~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1085 (1403)
+++++|-.++.+....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777776663 34778999999975
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.96 E-value=1.5e-05 Score=97.16 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=38.1
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEecC
Q 037155 363 GGQKKRVTTGEMLVGAAKVLLMDEI----------STGLDSSTTFQICKFLKQMV---HIMDVTMIVALLQP 421 (1403)
Q Consensus 363 GGqkqRvsia~aL~~~p~illLDEp----------tsgLDs~t~~~i~~~L~~l~---~~~~~tvii~~~q~ 421 (1403)
|++++|..+++|....|.|+|+||+ +.|.|......+.++|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 34667666555556665543 22344555565554
No 304
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.95 E-value=2.3e-08 Score=118.47 Aligned_cols=144 Identities=11% Similarity=0.029 Sum_probs=81.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCC-CCCCCHH
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIH-SPHVTLY 976 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~-~~~lTv~ 976 (1403)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+. ..+...+|+++|...+ +.+++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 35899999999999999999999999999999999853 34544412221 1122236777776542 2333321
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHH---cCCCC-cc---ccccc----CCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 037155 977 ESLLYSAWLRLSSDVDTKKRKIFVDEVMEL---VELKP-LR---DALVG----LPGVNGLSTEQRKRLTIAVELVANPSI 1045 (1403)
Q Consensus 977 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~---l~L~~-~~---~~~vg----~~~~~~LSgGqrqRl~IA~aL~~~P~i 1045 (1403)
..+ .+.............+...++- +.+.. .. +.+.. ......+++|+++|+..+.+++.+|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 111 1100000000001112233320 00110 00 11000 012335899999999998888899998
Q ss_pred EE-EeCCCC
Q 037155 1046 IF-MDEPTS 1053 (1403)
Q Consensus 1046 ll-LDEPTs 1053 (1403)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999987
No 305
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.95 E-value=1.5e-05 Score=92.90 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=46.2
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCchhHHhhcCEEEEEcC
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIM-DVTMIVALLQPAPETYDLFDDIILISE 437 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~~~~~~fD~IilL~~ 437 (1403)
||++|.+|++.|...+.++++++.|+|... ..+|...++++.+.. +..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI------------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI------------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE------------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE------------echHHhcC
Confidence 999999999999999999999999998643 346777777776665 5555554 77777754
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.94 E-value=1e-05 Score=95.70 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=86.4
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCC---------ceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHH---HHH
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTG---------GYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYE---SLL 980 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e---~l~ 980 (1403)
.++|+|++|||||||++.|+|.... +...|.+.++|.+. .+....|++.+.+ ...+.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCC----HHHHHHHHHHHH
Confidence 3999999999999999999995421 13468899988543 1223456655422 111211 111
Q ss_pred HHH--h--h--hCCCCCc--HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 037155 981 YSA--W--L--RLSSDVD--TKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA----VEL-VANPSIIF 1047 (1403)
Q Consensus 981 ~~~--~--l--r~~~~~~--~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA----~aL-~~~P~ill 1047 (1403)
... . + ....+.. ..+..+.+.++++.+++.+..--.+++. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 000 0 0 0011111 1223344567788887655431122221 224787888888877 555 334454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 037155 1048 MDEPTSGLDARAAAIVMRTVRNTVD 1072 (1403)
Q Consensus 1048 LDEPTsgLD~~~~~~i~~~l~~~~~ 1072 (1403)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988653
No 307
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.94 E-value=3.4e-07 Score=100.83 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=38.9
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC----------
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV---------- 260 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~---------- 260 (1403)
++.+.+ ++++|+|||||||||||++|+|.+.+ .+|+|.++|.++....
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~---------------------~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP---------------------DLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC---------------------CTTTC------------------CGG
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc---------------------CCCeEEECCEEcccCCccccccchhh
Confidence 456666 89999999999999999999999865 4788988887663211
Q ss_pred -ccceEEEeccC
Q 037155 261 -PQRTCAYISQH 271 (1403)
Q Consensus 261 -~~~~~~yv~Q~ 271 (1403)
.++.++|++|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 13467888874
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.93 E-value=2.1e-06 Score=94.92 Aligned_cols=39 Identities=33% Similarity=0.274 Sum_probs=22.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhc-CCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 936 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 936 (1403)
.+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999 8753
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.92 E-value=6.3e-07 Score=96.91 Aligned_cols=56 Identities=23% Similarity=0.143 Sum_probs=38.0
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh--hhcceeeEeecC
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE--TFARVSGYCEQT 966 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~ 966 (1403)
.+..++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3556789999999999999999999999753 6678887654321 112235777765
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.88 E-value=6.2e-07 Score=96.93 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC--ccceEEEec
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV--PQRTCAYIS 269 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~ 269 (1403)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------------------------g~~~i~~d~~~~~~~~~~~~~g~~~ 78 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------------------------GLEFAEADAFHSPENIATMQRGIPL 78 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------------------------CCEEEEGGGGSCHHHHHHHHTTCCC
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------------------------CCeEEcccccccHHHHHHHhcCCCC
Confidence 456789999999999999999999999864 77888876653211 112356666
Q ss_pred cCCCCCCCCCHHHHH
Q 037155 270 QHDLHHGEMTVRETL 284 (1403)
Q Consensus 270 Q~d~~~~~lTVrE~l 284 (1403)
|++...+.+++.|++
T Consensus 79 ~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 79 TDEDRWPWLRSLAEW 93 (200)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHH
Confidence 654444334444444
No 311
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.85 E-value=2.4e-06 Score=100.13 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=37.1
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEE-EEEcCccCChhhhcceeeEeecC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IKISGYPKKQETFARVSGYCEQT 966 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~ 966 (1403)
-+++|+++.|.||+|+|||||+..+++.... ..|. +++++.........+.+|+.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhh
Confidence 4899999999999999999999999874211 0122 45665443222233344544443
No 312
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.84 E-value=1.2e-05 Score=94.96 Aligned_cols=166 Identities=13% Similarity=0.005 Sum_probs=85.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCccceEEEeccCCCCCCCC
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 278 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 278 (1403)
.++|+|+||||||||++.|+|...... ..-+.+..+.+|.|.++|.++. .-.+.|++.+.+...-+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~----------~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve- 246 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVD----------TKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD- 246 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc----------CCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-
Confidence 489999999999999999999753110 0011122346799999885431 12345555543211100
Q ss_pred CHHHHHHhhcccccccchhhHHHHhhHHHHhcCCCCCch--HHHHHHHHHhhccchhHHHHHHHHHcCCcccccccccCc
Q 037155 279 TVRETLDFSGRCLGVGTRYELLAELSRREKQQGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKLLGLDICADTMVGDE 356 (1403)
Q Consensus 279 TVrE~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 356 (1403)
..+.++.........-.-+ +. .+++ .+.. ...+..+++.+++.+..--.|++.
T Consensus 247 ~f~~tl~~~~~aD~il~Vv-------------D~-s~~~~~~~~~-----------~~~~~~~L~~l~~~~~p~ilV~NK 301 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVI-------------DS-TFSENLLIET-----------LQSSFEILREIGVSGKPILVTLNK 301 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEE-------------ET-TSCHHHHHHH-----------HHHHHHHHHHHTCCSCCEEEEEEC
T ss_pred HHHHHHHHHHhCCEEEEEE-------------EC-CCCcchHHHH-----------HHHHHHHHHHhCcCCCCEEEEEEC
Confidence 0111221110000000000 00 0011 1110 112345677777665442333431
Q ss_pred cCCCCChhHhhHHHHH----HHH-hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037155 357 MRRGISGGQKKRVTTG----EML-VGAAKVLLMDEISTGLDSSTTFQICKFLKQMVH 408 (1403)
Q Consensus 357 ~~rgLSGGqkqRvsia----~aL-~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 408 (1403)
..-+|+|+++|+.++ +++ ..+|++ +|+|++|......+.+.|.+...
T Consensus 302 -~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 302 -IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp -GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred -CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 122788889988887 554 333444 89999999999999998887654
No 313
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.83 E-value=6.7e-06 Score=106.61 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCeEEE
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELLL 1097 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~i~l 1097 (1403)
-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||+++ ++.+.+++.-+
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~v 264 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPL 264 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCc
Confidence 479999999999999999999999999996 999887777766666654445677775 89765 56677764333
No 314
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.77 E-value=6.3e-07 Score=98.72 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=38.5
Q ss_pred EEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh-----------hhhcceeeEeecC
Q 037155 905 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-----------ETFARVSGYCEQT 966 (1403)
Q Consensus 905 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 966 (1403)
++.+.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566677 89999999999999999999996543 25788888765411 1124568888884
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.74 E-value=3.6e-05 Score=90.94 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 037155 1024 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQP 1084 (1403)
Q Consensus 1024 ~LSgGqrqRl~IA~aL~~~P~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~ 1084 (1403)
.+|++|+|++. +.+...++-++++| +|++|+|......+.+.+.+... +..+|++. ||.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 58999998876 55556777789999 99999999988888887777654 77888888 764
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.74 E-value=2.6e-05 Score=83.76 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037155 368 RVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMV 407 (1403)
Q Consensus 368 Rvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~ 407 (1403)
....|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999 99999999999988887643
No 317
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=1.3e-05 Score=86.40 Aligned_cols=40 Identities=33% Similarity=0.147 Sum_probs=25.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+...+++|||+.+++|+.++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4557899999999999999999999999999999999875
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.68 E-value=1.3e-05 Score=93.25 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
-|+.+.+-++||+++.|.|++|+|||||+.-++..... .|. .+.|+. ..++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~---------~Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDR---------GVAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTC---------EEEEEE------SSSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCC---------eEEEEe------CCCCHHHHH
Confidence 45555566899999999999999999999888753210 111 122322 123333222
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
. ++......+.+..+.+ | .||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ~------------------Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 L------------------RALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp H------------------HHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred H------------------HHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 1 1111111122222221 1 599999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHhC--CCEEEEEe
Q 037155 1060 AAIVMRTVRNTVDT--GRTVVCTI 1081 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~--g~tvi~~~ 1081 (1403)
.|...++++.++ |..+|++-
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEe
Confidence 566666666543 56777763
No 319
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.65 E-value=2.1e-05 Score=83.20 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=32.2
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999 9999999999999999999998754
No 320
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.61 E-value=1.3e-05 Score=93.06 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=58.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCC-----
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFV----- 260 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~----- 260 (1403)
+++++++.+++|++++|+||||+||||++..|++.+.+ ..|+|.+.+.+.....
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~---------------------~g~kVllid~D~~r~~a~~ql 152 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE---------------------LGYKVLIAAADTFRAGATQQL 152 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH---------------------TTCCEEEEECCCSCHHHHHHH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH---------------------CCCeEEEEeCCCcchhHHHHH
Confidence 45789999999999999999999999999999998753 3578888776542210
Q ss_pred --c-----cceEEEe-ccCCCCCCCCCHHHHHHh
Q 037155 261 --P-----QRTCAYI-SQHDLHHGEMTVRETLDF 286 (1403)
Q Consensus 261 --~-----~~~~~yv-~Q~d~~~~~lTVrE~l~f 286 (1403)
. +..+.++ +|.....|..++++++..
T Consensus 153 ~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 153 EEWIKTRLNNKVDLVKANKLNADPASVVFDAIKK 186 (320)
T ss_dssp HHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHH
T ss_pred HHHHhccccCCceEEeCCCCCCCHHHHHHHHHHH
Confidence 1 3457888 776555555566666654
No 321
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.60 E-value=1.2e-06 Score=107.36 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=51.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCCCCCc---
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELNEFVP--- 261 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~~~~~--- 261 (1403)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----------------------~~~i~i~g~~~~~~~~g~~ 108 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----------------------VPFITASGSDFVEMFVGVG 108 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----------------------CCEEEEEGGGGTSSCTTHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEEehhHHHHhhhhhH
Confidence 4678899999999 89999999999999999999762 4778888876543211
Q ss_pred cceEEEeccCCC-CCCCCCHHHHH
Q 037155 262 QRTCAYISQHDL-HHGEMTVRETL 284 (1403)
Q Consensus 262 ~~~~~yv~Q~d~-~~~~lTVrE~l 284 (1403)
.+.+.+++|+.. ..|.+.+.|++
T Consensus 109 ~~~v~~lfq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 109 AARVRDLFETAKRHAPCIVFIDEI 132 (499)
T ss_dssp HHHHHHHTTTSSSSSSCEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCEEEEehH
Confidence 123444555432 33444444444
No 322
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.52 E-value=2.9e-05 Score=99.06 Aligned_cols=132 Identities=16% Similarity=0.096 Sum_probs=73.9
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHH
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYS 982 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~ 982 (1403)
+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ...++.+++..|...+... ++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~------ 75 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR------ 75 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE------
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE------
Confidence 457889999999999999999999999632211123555 45543221 1223344555443222110 000
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 037155 983 AWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1062 (1403)
Q Consensus 983 ~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~ 1062 (1403)
..+.|+ +|...++ .......-..+..++++| |+.|+|+.+...
T Consensus 76 ---------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 76 ---------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp ---------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred ---------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 011222 2221222 112223335678889999 999999887743
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcH
Q 037155 1063 VMRTVRNTVDTGRTVVCTIHQPSI 1086 (1403)
Q Consensus 1063 i~~~l~~~~~~g~tvi~~~H~~~~ 1086 (1403)
+ +.+.+.+.++|+++|..+.
T Consensus 119 ~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 W----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHccCCEEEEecCCch
Confidence 2 3333457889999998763
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.51 E-value=2.9e-05 Score=83.73 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++++|++++|+||||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999975
No 324
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.49 E-value=1.2e-05 Score=90.16 Aligned_cols=64 Identities=22% Similarity=0.094 Sum_probs=43.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHh---ccccccchhhcccchhhhhhhccCCCcceEEE--------ECC
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLHENLRVRFQSNKFLIIRIWKTEQASGKIT--------YCG 253 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~La---G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~--------~~G 253 (1403)
.++++++ ++|++++|+|||||||||++++|+ |...+ .+|.+. .+|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---------------------d~g~i~r~~~~~~~~~g 73 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---------------------DSGAIYRVLALAALHHQ 73 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---------------------EHHHHHHHHHHHHHHTT
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---------------------CCCceehHhHHHHHHcC
Confidence 3455543 789999999999999999999999 76543 467776 777
Q ss_pred ccCCCCC----ccceEEEeccCC
Q 037155 254 HELNEFV----PQRTCAYISQHD 272 (1403)
Q Consensus 254 ~~~~~~~----~~~~~~yv~Q~d 272 (1403)
.++.+.. ..+.+++++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 74 VDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp CCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCcccHHHHHHHHHcCCEEEecC
Confidence 7663321 135577777643
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.43 E-value=1.4e-05 Score=86.23 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=33.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
....++++...++|++++|+||||||||||+++|++.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566777778999999999999999999999999874
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.42 E-value=5.6e-05 Score=81.42 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.0
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.+++|++++|+||||||||||++.|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998743
No 327
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=5.9e-05 Score=81.20 Aligned_cols=38 Identities=29% Similarity=0.120 Sum_probs=24.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999643
No 328
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.38 E-value=0.00048 Score=81.64 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1085 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1085 (1403)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776654 5789999999874
No 329
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.38 E-value=0.00042 Score=80.25 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=34.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 182 RDVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 182 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.+.+-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 355678888888999999999999999999999988854
No 330
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=8.4e-07 Score=108.73 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=80.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChh---hhcceeeEeecCCC-CCCCC
Q 037155 898 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQE---TFARVSGYCEQTDI-HSPHV 973 (1403)
Q Consensus 898 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~l 973 (1403)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+.+++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 34678888889989 89999999999999999998653 35678887653211 11223455666543 34555
Q ss_pred CHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 037155 974 TLYESLLYSAWLRLS-SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1052 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPT 1052 (1403)
.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555322111110 00112233333444433 2677788888888888899987 88887
Q ss_pred C
Q 037155 1053 S 1053 (1403)
Q Consensus 1053 s 1053 (1403)
.
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
No 331
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.37 E-value=9.2e-06 Score=90.88 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=35.5
Q ss_pred cceEeeeeEEEEeC---CeEEEEEccCCCchHHHHHhhcCCC
Q 037155 897 RLQLLHSVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
...+|+|+|+.|++ |+.++|+|++||||||+.++|++..
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35699999999999 9999999999999999999999743
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.37 E-value=1.6e-05 Score=89.00 Aligned_cols=39 Identities=44% Similarity=0.536 Sum_probs=36.0
Q ss_pred cceeeeceEEEEeC---CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 183 DVQILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~---Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..++|+|+|+.+++ |+.++|+|++||||||+.++|++.+
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999 9999999999999999999999865
No 333
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=7.2e-05 Score=79.24 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999864
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.36 E-value=4.6e-05 Score=80.56 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.7
Q ss_pred eeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 902 HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 902 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999 9999999999999999999874
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=5.9e-05 Score=80.32 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999998864
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.33 E-value=3.5e-05 Score=83.34 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCeEEEEe
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELLLMK 1099 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~i~ll~ 1099 (1403)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 568888999998888888654332 3345666555555554432 356888888875321 245688888885
No 337
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.33 E-value=0.00014 Score=94.34 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=53.7
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCE
Q 037155 361 ISGGQKKRVTTGEMLVGAAKVLLMDEIST-GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDD 431 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 431 (1403)
+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++-.++..++.+++++
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 79999999999999999999999999996 9998877666666654432 2456666655566666667764
No 338
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.00031 Score=82.84 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 037155 360 GISGGQKKRVTTGEMLVGAAKVLLMD-EISTGLDSSTTFQICKFLKQMVHIMDVTMIVAL 418 (1403)
Q Consensus 360 gLSGGqkqRvsia~aL~~~p~illLD-EptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 418 (1403)
.+|+||+|++. +.+...++-++++| ++.+|+|......+++.+..... +..+++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 37999998876 55555777888999 99999999888888777766432 45555544
No 339
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.30 E-value=1.5e-05 Score=94.24 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 037155 1025 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1082 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1082 (1403)
.+..++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999877764334445443 34566677765555 56766665
No 340
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.30 E-value=3.9e-05 Score=90.78 Aligned_cols=38 Identities=34% Similarity=0.317 Sum_probs=35.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999864
No 341
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.30 E-value=2.9e-05 Score=87.02 Aligned_cols=57 Identities=23% Similarity=0.135 Sum_probs=43.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhc---CCCCCceeEEEEE--------EcCccCCh----hhhcceeeEeecCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIK--------ISGYPKKQ----ETFARVSGYCEQTD 967 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 967 (1403)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8654 2357777 77776521 23556788888754
No 342
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.25 E-value=0.001 Score=75.91 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1088 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1088 (1403)
+++++.|..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998766532 22234444444321 2356788898753 334
Q ss_pred HHhcCeEE
Q 037155 1089 FEAFDELL 1096 (1403)
Q Consensus 1089 ~~~~d~i~ 1096 (1403)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44565443
No 343
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.25 E-value=0.00081 Score=78.80 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999998886
No 344
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.22 E-value=8.3e-05 Score=79.17 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKT 936 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~ 936 (1403)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999653
No 345
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.21 E-value=0.00027 Score=81.32 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCeE
Q 037155 1025 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDEL 1095 (1403)
Q Consensus 1025 LSgGqrqRl~IA~aL~--~~P~illLDEPTsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~i 1095 (1403)
+|.|++ .++..+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899987 4566666 68999998 7899876 66777888887653 43 5666666643 344555544
No 346
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.21 E-value=4.2e-05 Score=88.71 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=38.9
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
+++++++.+++|++++|+|+||+||||++..|++.... ..|++.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34688888999999999999999999999999985431 136677766554
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.19 E-value=9.4e-05 Score=81.63 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=32.3
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 951 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 951 (1403)
.++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 478999999999999999999999986 25677777653
No 348
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00012 Score=77.64 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=28.7
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEc
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS 947 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~ 947 (1403)
.+|++++|+||||||||||++.|++..... ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 368999999999999999999999854321 23554443
No 349
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.18 E-value=0.00016 Score=78.55 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=26.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998753
No 350
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00015 Score=76.10 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+|++++|+|||||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999854
No 351
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.15 E-value=0.00083 Score=78.10 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 037155 1029 QRKRLTIAVELV---ANPSIIFMDEPTSGLDA--------RA----AAIVMRTVRNTVD-TGRTVVCTIHQ 1083 (1403)
Q Consensus 1029 qrqRl~IA~aL~---~~P~illLDEPTsgLD~--------~~----~~~i~~~l~~~~~-~g~tvi~~~H~ 1083 (1403)
+.+.+..++.++ .+|+++++|+.++-.+. .. ...+++.|+++++ .+++||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 346677788887 57999999999976532 11 2345555666654 48999998875
No 352
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.13 E-value=0.00015 Score=79.88 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=26.7
Q ss_pred EEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 191 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++..++|++++|.||+|||||||+++|+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999999999985
No 353
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.11 E-value=0.0022 Score=73.14 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999864
No 354
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.09 E-value=0.00022 Score=82.65 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=78.0
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESL 979 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 979 (1403)
-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.- +++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 46666667999999999999999999998888742110 01 11233221 23333322
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 037155 980 LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1059 (1403)
Q Consensus 980 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEPTsgLD~~~ 1059 (1403)
.- .......+.+.++.+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 113 ~R------------------~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 KR------------------LIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp HH------------------HHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred HH------------------HHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 11 111111111111111 0 012889999999999999999999999998644
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 037155 1060 AAIVMRTVRNTVDT-GRT--VVCTIH 1082 (1403)
Q Consensus 1060 ~~~i~~~l~~~~~~-g~t--vi~~~H 1082 (1403)
...+...++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33455666666543 666 777755
No 355
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.05 E-value=0.0023 Score=74.86 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 186 iL~~vs-~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 57999999999999999999999999875
No 356
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.04 E-value=0.0018 Score=75.13 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 186 iL~~vs-~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-|+.+- +-+++|+++.|.||||+|||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 579999999999999999999999998753
No 357
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.03 E-value=0.00022 Score=76.82 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=27.1
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.++|++++|+||||||||||++.|++.+++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999999999998753
No 358
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=6.1e-05 Score=81.14 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=36.9
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEE--EEcCcc
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI--KISGYP 950 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~ 950 (1403)
..+.+++..++|++++|+||||||||||.++|++.... .|.+ .++|..
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~ 63 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDN 63 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCch
Confidence 44556666789999999999999999999999986431 2444 777654
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.99 E-value=0.00013 Score=93.18 Aligned_cols=31 Identities=39% Similarity=0.282 Sum_probs=26.6
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+++|+.++|+|++|+|||||++.|++...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4577899999999999999999999998653
No 360
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.98 E-value=0.0011 Score=78.06 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=27.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
..+|+++++.++ .++|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.92 E-value=0.00031 Score=76.12 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKT 936 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 936 (1403)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
No 362
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.91 E-value=0.00036 Score=74.90 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998864
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.85 E-value=0.00051 Score=74.18 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999999999864
No 364
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.84 E-value=0.00059 Score=82.81 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=47.4
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-EecCcEEEEecCCC
Q 037155 1041 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL-MKRGGRVIYAGPLG 1111 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i~l-l~~gG~~~~~g~~~ 1111 (1403)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.+..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999988888999999999854321111111111 22 35666666664
No 365
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.80 E-value=0.00062 Score=69.81 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+.++.+.+| +++|+|||||||||+|.+|.-.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 344555555 9999999999999999999843
No 366
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.80 E-value=0.0042 Score=71.24 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=25.4
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++++-++|.||||+|||||+++|++.+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5678889999999999999999999865
No 367
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.79 E-value=0.00052 Score=83.27 Aligned_cols=69 Identities=9% Similarity=0.217 Sum_probs=43.4
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCEEEE-EcCCeEEEecCh
Q 037155 377 GAAKVLLMDEISTGLDS-STTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFDDIIL-ISEGQIVYHGPR 446 (1403)
Q Consensus 377 ~~p~illLDEptsgLDs-~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~Iil-L~~G~iv~~G~~ 446 (1403)
.++++|++||+..-.+. .+...+...+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38999999999887764 667778888877654 4677888777665443222233222 344555544443
No 368
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.78 E-value=0.0076 Score=71.17 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.++|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 889999999999999999998764
No 369
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.00045 Score=72.06 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999976
No 370
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.76 E-value=0.00046 Score=81.43 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.74 E-value=0.00056 Score=70.09 Aligned_cols=29 Identities=28% Similarity=0.680 Sum_probs=24.0
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999986
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.69 E-value=0.00021 Score=82.61 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|+||||||||||+++|++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999999874
No 373
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.67 E-value=0.00044 Score=85.75 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=28.7
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
.+++|++++|+|+||||||||+++|+|.+.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999854
No 374
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.64 E-value=0.00058 Score=73.23 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.0
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+|++++|+||||||||||++.|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999999753
No 375
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.59 E-value=0.00079 Score=72.63 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
No 376
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.56 E-value=0.034 Score=65.23 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.7
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999888654
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.55 E-value=0.00073 Score=70.72 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.2
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCcc
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 950 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 950 (1403)
.+|++++|+|+|||||||+.+.|++.. |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 445666543
No 378
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.51 E-value=0.0017 Score=84.65 Aligned_cols=31 Identities=48% Similarity=0.641 Sum_probs=28.0
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+++|+.++|.||||+|||||+++|+|.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999999999763
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.49 E-value=0.0014 Score=85.36 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=27.2
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCCCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 936 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 936 (1403)
.+++|+.+.|+||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999998653
No 380
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.48 E-value=0.003 Score=75.84 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
No 381
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.0011 Score=72.92 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=26.9
Q ss_pred eeceEEEEe---CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 187 LKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 187 L~~vs~~i~---~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|.++|+.+. +|.+++|.||+||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567777776 899999999999999999999998773
No 382
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.44 E-value=0.0022 Score=73.61 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=25.2
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++++.-+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5778899999999999999999999754
No 383
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.42 E-value=0.00046 Score=80.87 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=34.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++++++.+++|..++|+|+||||||||++.|+|.+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46778888889999999999999999999999999874
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.39 E-value=0.00013 Score=84.36 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.3
Q ss_pred ccceEeeeeEEEEeCCe------EEEEEccCCCchHHHHHhhcCCC
Q 037155 896 DRLQLLHSVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 896 ~~~~iL~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+..+.|++++..+..++ ++||+||||||||||+++|.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456777777776665 99999999999999999999854
No 385
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.37 E-value=0.00097 Score=69.50 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 386
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.36 E-value=0.015 Score=66.61 Aligned_cols=27 Identities=48% Similarity=0.705 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|...++|.||||+||||+.++|++.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 456789999999999999999999764
No 387
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.36 E-value=0.0014 Score=77.08 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+++..++|+|+||||||||++.|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999997643
No 388
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.36 E-value=0.0074 Score=72.41 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
++.+++++||+||||||++..|++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999988753
No 389
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.26 E-value=0.0026 Score=77.27 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred EeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCC--CceeEEEEEEcCccCChhhhc-ceee---EeecCCCCCCCC
Q 037155 900 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYIEGDIKISGYPKKQETFA-RVSG---YCEQTDIHSPHV 973 (1403)
Q Consensus 900 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~-~~~g---yv~Q~~~~~~~l 973 (1403)
-|+.+.+-+++|+++.|.|++|+|||||..-++.... .+ ..-+.++.. .+...+. |..+ -++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~------ 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-MPAAQLTLRMMCSEARIDMNR------ 259 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-SCHHHHHHHHHHHHTTCCTTT------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-CCHHHHHHHHHHHHcCCCHHH------
Confidence 3555556689999999999999999999988876321 11 011222221 1111111 1000 000000
Q ss_pred CHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCC
Q 037155 974 TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEP 1051 (1403)
Q Consensus 974 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~--~~P~illLDEP 1051 (1403)
++. .....++ ...+.+.++.+.-.++ .+-. ..++|..+- .+.++.+. .+|+++++|..
T Consensus 260 -----------l~~-g~l~~~~-~~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l 319 (444)
T 2q6t_A 260 -----------VRL-GQLTDRD-FSRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDYL 319 (444)
T ss_dssp -----------CCG-GGCCHHH-HHHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEECG
T ss_pred -----------HhC-CCCCHHH-HHHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcCh
Confidence 000 0111222 1223333333322221 1111 125777765 34556665 47999999998
Q ss_pred CCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q 037155 1052 TSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIH 1082 (1403)
Q Consensus 1052 TsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H 1082 (1403)
+.=.+. .....+.+.|+.++++ +++||+++|
T Consensus 320 ~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 320 QLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp GGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred hhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 754322 1234677788888754 899999988
No 390
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.20 E-value=0.0039 Score=65.02 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
No 391
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.20 E-value=0.0015 Score=70.25 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999854
No 392
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.17 E-value=0.00082 Score=83.35 Aligned_cols=41 Identities=37% Similarity=0.460 Sum_probs=32.3
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEE-EEE-EcCcc
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIK-ISGYP 950 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 950 (1403)
+++|++++|+|+||||||||+++|+|...+. .| .+. ++|..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 6789999999999999999999999965321 23 564 77743
No 393
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.16 E-value=0.013 Score=71.08 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=33.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345678888889999999999999999999999988654
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0024 Score=67.15 Aligned_cols=28 Identities=39% Similarity=0.412 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|++++|.|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
No 395
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.10 E-value=0.0022 Score=69.22 Aligned_cols=29 Identities=28% Similarity=0.680 Sum_probs=23.9
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999985
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.09 E-value=0.0029 Score=68.30 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.++.+.+| +++|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455554 99999999999999999997443
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.06 E-value=0.011 Score=66.75 Aligned_cols=27 Identities=48% Similarity=0.770 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++.-++|.||+|+|||||+++++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456678999999999999999999865
No 398
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.03 E-value=0.0025 Score=69.47 Aligned_cols=25 Identities=44% Similarity=0.599 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+..++|+|||||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 399
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.00 E-value=0.0024 Score=68.79 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999999999765
No 400
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0029 Score=74.56 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998764
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.97 E-value=0.021 Score=62.80 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 037155 1041 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1082 (1403)
Q Consensus 1041 ~~P~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1082 (1403)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666555555443321 1258888888
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.97 E-value=0.0024 Score=69.11 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=26.7
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++|.+++|.|++||||||+.+.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999999999875
No 403
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.96 E-value=0.016 Score=63.66 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 037155 1026 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1093 (1403)
Q Consensus 1026 SgGqrqRl~IA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1093 (1403)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-++++++.--+.....+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555543 33578999999999976 6777666444444444332234555554433333344443
No 404
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.95 E-value=0.003 Score=66.88 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999975
No 405
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.94 E-value=0.0047 Score=65.45 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999988887 7899999999999999999873
No 406
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.93 E-value=0.0078 Score=68.06 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++.-+.|.||+|+|||||.++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 556679999999999999999998753
No 407
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.90 E-value=0.0052 Score=74.43 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhccccccchhhcccchhhhhhhccCCCcceEEEECCccCC---CCCccceEEEeccCCCC
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLHENLRVRFQSNKFLIIRIWKTEQASGKITYCGHELN---EFVPQRTCAYISQHDLH 274 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~d~~ 274 (1403)
-.++|+|+||+|||||++.|+|....... ...+ -...+..|.+.++|+++. ....++..++.+|....
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~g--------tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~ 251 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVS-PIPG--------TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEK 251 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC--------------CCEEEEETTEEEEESSCSCC-----------CC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccC-CCCC--------CcCCceEEEEEECCEEEEEEECCCCccccccchhhHHH
Confidence 47899999999999999999997531000 0000 001235799999997542 11122333444344344
Q ss_pred CCCCCHHHHHHh
Q 037155 275 HGEMTVRETLDF 286 (1403)
Q Consensus 275 ~~~lTVrE~l~f 286 (1403)
+..++..+++..
T Consensus 252 ~~~~~~~~~i~~ 263 (439)
T 1mky_A 252 YSNYRVVDSIEK 263 (439)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 444445555544
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.90 E-value=0.003 Score=69.48 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=25.8
Q ss_pred EeeeeEEEEe---CCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 900 LLHSVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 900 iL~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3667777776 89999999999999999999999754
No 409
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.90 E-value=0.0017 Score=80.81 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=31.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+++++++.+ +|+.++|+||||+|||||+++|++.+.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556666666 899999999999999999999999874
No 410
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.75 E-value=0.0054 Score=64.48 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
.+++|+||+|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999864
No 411
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.75 E-value=0.017 Score=67.72 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999988775
No 412
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.75 E-value=0.024 Score=65.56 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 906 GAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 906 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999988774
No 413
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.75 E-value=0.0092 Score=69.00 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=31.5
Q ss_pred hcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 037155 376 VGAAKVLLMDEISTG-LDSSTTFQICKFLKQMVHIMDVTMIVALLQPAP 423 (1403)
Q Consensus 376 ~~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 423 (1403)
+.++++|++||+-.- .|..+...+...+..... .+..+|++...+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 356899999998662 233667778888776654 35566666655543
No 414
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.70 E-value=0.0048 Score=64.33 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.70 E-value=0.00061 Score=79.82 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
...+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578888888999999999999999999999999974
No 416
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.67 E-value=0.0061 Score=73.87 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=29.5
Q ss_pred EEEEEccCCCchHHHHHhhcCCCC------Cc----eeEEEEEEcCcc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKT------GG----YIEGDIKISGYP 950 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~------~~----~~~G~i~i~g~~ 950 (1403)
.++|+|+||+|||||++.|+|... ++ ...|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999532 11 235788888864
No 417
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.65 E-value=0.0049 Score=67.91 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=37.3
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 037155 362 SGGQKKRVTTGEMLVGAAKVLLMDEIST-GLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPETYDLFD 430 (1403)
Q Consensus 362 SGGqkqRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 430 (1403)
+.|.-.+. ....+.+-+++++||+-. ++|.......++.+..... .-.+++++-+-+.....++|+
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcC
Confidence 34544444 233578899999999976 6777666445444443322 124555555555444444443
No 418
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.62 E-value=0.0014 Score=76.18 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=32.1
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCChHHHHHHHhcccc
Q 037155 186 ILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~--~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++++++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56677777788887 99999999999999999999874
No 419
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.57 E-value=0.0078 Score=72.90 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=27.7
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 444545589999999999999999999887775
No 420
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.55 E-value=0.0039 Score=72.83 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=32.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 189 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
|+++.+.+|+.++|+||+|+|||||++.|++...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 8999999999999999999999999999998753
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.54 E-value=0.0047 Score=64.81 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.1
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
No 422
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.51 E-value=0.0044 Score=66.69 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998644
No 423
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.50 E-value=0.0017 Score=75.87 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=30.4
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
No 424
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.48 E-value=0.0061 Score=64.37 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++|.+++|.|++||||||+.+.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999874
No 425
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.47 E-value=0.018 Score=62.90 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCeEEEEe
Q 037155 1042 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELLLMK 1099 (1403)
Q Consensus 1042 ~P~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~i~ll~ 1099 (1403)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|.+.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45566777777999999999 55667888999998874
No 426
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.46 E-value=0.018 Score=66.52 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.5
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 037155 1040 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1084 (1403)
Q Consensus 1040 ~~~P~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1084 (1403)
..+|.+||+||+-. .-|..+...+...+..+.+.|+.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344777888888888877787788877754
No 427
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.45 E-value=0.0063 Score=65.38 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh--HHhhcCEEEEEc
Q 037155 362 SGGQKKRVTTGEMLVGAAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALLQPAPE--TYDLFDDIILIS 436 (1403)
Q Consensus 362 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~--~~~~fD~IilL~ 436 (1403)
+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .+.++|+..+ ...+ ....+|.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~-~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVP-LLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECT-TTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEec-hhhhcCcHhhCCEEEEEE
Confidence 678899999999888888654433 2345555555555444321 2445555432 2222 256788887774
No 428
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.44 E-value=0.006 Score=64.61 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=20.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999998887 5689999999999999999974
No 429
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.44 E-value=0.039 Score=64.80 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998643
No 430
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.42 E-value=0.0049 Score=67.15 Aligned_cols=57 Identities=21% Similarity=0.093 Sum_probs=37.2
Q ss_pred CeEEEEEccCCCchHHHHHhhcCCCCCc-eeEEEEEE--------cCccCCh----hhhcceeeEeecCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKI--------SGYPKKQ----ETFARVSGYCEQTD 967 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~~ 967 (1403)
+.+++|+|||||||||+.+.|++..... ...|++.. +|.+... ..+.+.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999743111 22366554 4554331 12345577777753
No 431
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.40 E-value=0.0073 Score=64.57 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCC
Q 037155 910 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS 989 (1403)
Q Consensus 910 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~ 989 (1403)
+..-+.|.||+|+|||||+++|+...... ...+.+
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~------------------------------------------- 87 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLI------------------------------------------- 87 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEE-------------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEE-------------------------------------------
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHH
Q 037155 990 DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1067 (1403)
Q Consensus 990 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~IA~aL~~~P~illLDEP--TsgLD~~~~~~i~~~l 1067 (1403)
.....-...+......-.+....+. +.++++|++||+ ...-|......+..++
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 88 -VYVPELFRELKHSLQDQTMNEKLDY------------------------IKKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp -EEHHHHHHHHHHC---CCCHHHHHH------------------------HHHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred -EEhHHHHHHHHHHhccchHHHHHHH------------------------hcCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhc
Q 037155 1068 RNTVDTGRTVVCTIHQPSIDIFEAF 1092 (1403)
Q Consensus 1068 ~~~~~~g~tvi~~~H~~~~~~~~~~ 1092 (1403)
......+..+|++++.+..++.+.+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
No 432
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.39 E-value=0.048 Score=59.55 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=40.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCEEEEEc
Q 037155 378 AAKVLLMDEISTGLDSSTTFQICKFLKQMVHIMDVTMIVALL---------QPAPETYDLFDDIILIS 436 (1403)
Q Consensus 378 ~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~---------q~~~~~~~~fD~IilL~ 436 (1403)
+++++++||.-. |+. ++++.++.+++ .+.++|++=+ .+++++..++|.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 35556666666 4788888776 67788999999999875
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.34 E-value=0.0046 Score=69.06 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 193 ~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+++.+++|+|||||||||+.+.|+..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999999875
No 434
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.017 Score=67.86 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999999999864
No 435
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.29 E-value=0.0024 Score=68.33 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=30.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 185 QILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 185 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888875 679999999999999999874
No 436
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.28 E-value=0.16 Score=59.57 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+-+++|+++.|.||+|+|||||...++..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 35899999999999999999999888754
No 437
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.27 E-value=0.0063 Score=64.31 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.9
Q ss_pred eeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 903 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 903 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999864
No 438
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.26 E-value=0.068 Score=59.24 Aligned_cols=27 Identities=52% Similarity=0.743 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..-++|.||+|+|||||.++++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999764
No 439
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.25 E-value=0.0013 Score=77.64 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=28.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 897 RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 897 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 455788888876 999999999999999998853
No 440
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.23 E-value=0.0064 Score=69.78 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred CChhHhhHHHHHHHHh--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 037155 361 ISGGQKKRVTTGEMLV--GAAKVLLMDEISTGLDSST-TFQICKFLKQMVHIMD 411 (1403)
Q Consensus 361 LSGGqkqRvsia~aL~--~~p~illLDEptsgLDs~t-~~~i~~~L~~l~~~~~ 411 (1403)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5666676 78999998 7899876 5667777777765433
No 441
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.22 E-value=0.0023 Score=79.59 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=37.6
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 4566777766 899999999999999999999998653 23577776664
No 442
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.21 E-value=0.0029 Score=67.63 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=30.0
Q ss_pred eEeeeeEEEEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 899 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888877777 5799999999999999999974
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.20 E-value=0.0078 Score=64.48 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 037155 199 MTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 444
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.19 E-value=0.0066 Score=65.02 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999864
No 445
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.1 Score=61.11 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
No 446
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.17 E-value=0.0091 Score=62.82 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999644
No 447
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.16 E-value=0.0079 Score=72.05 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=30.4
Q ss_pred eceEEEEeCCeEEEEEcCCCCChHHHHHHHhccccc
Q 037155 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLHE 223 (1403)
Q Consensus 188 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1403)
+++++. +|++++++||+||||||++..|++.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567777 8999999999999999999999998853
No 448
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.11 E-value=0.0073 Score=70.82 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=28.8
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCc
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 949 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 949 (1403)
+++.+++|+|++|||||||++.|+|.... ..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 45789999999999999999999984321 1245555443
No 449
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.06 E-value=0.0059 Score=69.87 Aligned_cols=34 Identities=29% Similarity=0.204 Sum_probs=29.9
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCChHHHHHHHhcccc
Q 037155 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 188 ~~-vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
++ +++..+ |++++++|++|+||||++..|++.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35 677766 99999999999999999999999875
No 450
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.04 E-value=0.025 Score=62.81 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEEEEccCCCchHHHHHhhcCCCCCceeEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHhhhCCCCCc
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVD 992 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~lr~~~~~~ 992 (1403)
.++|+|.+|+|||||++.|.|... ...+......+.....+.+.-++..+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~--------~~~~~~~~~~T~~~~~~~~~~~~~~i~--------------------- 73 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR--------FFSRLGATSVTRACTTGSRRWDKCHVE--------------------- 73 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC--------C---------CCSCEEEEEEETTEEEE---------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--------ccccCCCCCccccEEEEEEEECCcEEE---------------------
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCC-----CHHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHH
Q 037155 993 TKKRKIFVDEVMELVELKPLRDALVGLPGVNGL-----STEQRKRLTIAVELV---ANPSIIFMDEPTSGLDARAAAIVM 1064 (1403)
Q Consensus 993 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L-----SgGqrqRl~IA~aL~---~~P~illLDEPTsgLD~~~~~~i~ 1064 (1403)
+.|+. |+ +.|++.+-.+.+++. .+++++++--+.+. .......++
T Consensus 74 -------------------liDTP-------G~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~ 126 (247)
T 3lxw_A 74 -------------------VVDTP-------DIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAV 126 (247)
T ss_dssp -------------------EEECC-------SCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHH
T ss_pred -------------------EEECC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHH
Q ss_pred HHHHHHHhC---CCEEEEEec
Q 037155 1065 RTVRNTVDT---GRTVVCTIH 1082 (1403)
Q Consensus 1065 ~~l~~~~~~---g~tvi~~~H 1082 (1403)
+.+++.... +.++|+++|
T Consensus 127 ~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 127 RQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp HHHHHHHCGGGGGGEEEEEEC
T ss_pred HHHHHHhChhhhccEEEEEEc
No 451
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.03 E-value=0.011 Score=61.80 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|.++.|.|+|||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999866
No 452
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.02 E-value=0.009 Score=61.75 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|.||+||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999765
No 453
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.01 E-value=0.0026 Score=74.98 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 184 VQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45778888876 899999999999999998863
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.01 E-value=0.0073 Score=67.35 Aligned_cols=34 Identities=38% Similarity=0.731 Sum_probs=24.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 186 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++++++..++| ++|.||||+|||||+++|++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999875
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.96 E-value=0.011 Score=60.80 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.95 E-value=0.02 Score=59.89 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 457
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.89 E-value=0.0031 Score=73.65 Aligned_cols=39 Identities=33% Similarity=0.667 Sum_probs=34.1
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCChHHHHHHHhcccc
Q 037155 184 VQILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 184 ~~iL~~vs~~i~~Ge~--~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
..+++.++..++.|++ +++.||||+||||+++++++.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3577778888888988 99999999999999999999864
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.84 E-value=0.012 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHhhcCCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 459
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.82 E-value=0.0088 Score=64.06 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHhhcC
Q 037155 913 LTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g 933 (1403)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 460
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.81 E-value=0.095 Score=63.35 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=33.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+.+-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 45668888778999999999999999999999888854
No 461
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.77 E-value=0.012 Score=69.75 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.0
Q ss_pred eEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 190 vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445677889999999999999999999986
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.77 E-value=0.15 Score=58.75 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.2
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
.|..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999743
No 463
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.74 E-value=0.012 Score=64.72 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 464
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.73 E-value=0.28 Score=67.81 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=31.3
Q ss_pred ceeeeceE--EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 184 VQILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 184 ~~iL~~vs--~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+-|+.+- +-+++|+++.|.||||+|||||...++...
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577765 469999999999999999999998887643
No 465
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.69 E-value=0.25 Score=60.70 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=31.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCChHHHHHHHhcc
Q 037155 183 DVQILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 183 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
+.+-|+.+-+-+++|+++.|.|+||+|||||+.-++-.
T Consensus 228 G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 228 GCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp SCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred chhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 34567777667999999999999999999999888754
No 466
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.68 E-value=0.014 Score=61.63 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998654
No 467
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.14 Score=60.58 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|-+=+++.||||+|||+|.+++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33447889999999999999999976
No 468
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.13 Score=61.65 Aligned_cols=28 Identities=50% Similarity=0.865 Sum_probs=24.1
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|-+=+++.||||+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4555668889999999999999999876
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.61 E-value=0.014 Score=64.29 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
No 470
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.60 E-value=0.014 Score=61.30 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=27.7
Q ss_pred eEEEEEccCCCchHHHHHhhcCCCC-CceeEEEEEEcCc
Q 037155 912 VLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGY 949 (1403)
Q Consensus 912 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 949 (1403)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999987421 2223466666543
No 471
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.55 E-value=0.016 Score=60.87 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhccc
Q 037155 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 197 Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999755
No 472
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.49 E-value=0.016 Score=64.76 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999865
No 473
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.45 E-value=0.15 Score=62.64 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=26.9
Q ss_pred eeeeEEEEeCCeEEEEEccCCCchHHHHHhhcC
Q 037155 901 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 901 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444444589999999999999999999877764
No 474
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.094 Score=62.91 Aligned_cols=28 Identities=43% Similarity=0.740 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|-+=++|.||||+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455567899999999999999999976
No 475
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.35 E-value=0.16 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEEeCCeEEEEEcCCCCChHHHHHHHhc
Q 037155 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 192 ~~i~~Ge~~~llGp~GsGKSTLL~~LaG 219 (1403)
|=+++| ++.|.||||+|||||+.-++-
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHH
Confidence 557889 899999999999999665543
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.33 E-value=0.018 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 477
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.29 E-value=0.019 Score=60.52 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.9
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
..+|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999753
No 478
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.27 E-value=0.018 Score=60.42 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999999654
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.27 E-value=0.0035 Score=72.80 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=31.9
Q ss_pred eEeeeeEEEEeCCeE--EEEEccCCCchHHHHHhhcCC
Q 037155 899 QLLHSVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 899 ~iL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367778888889988 999999999999999999984
No 480
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.27 E-value=0.014 Score=63.03 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.4
Q ss_pred EeCCeEEEEEccCCCchHHHHHhhcCCC
Q 037155 908 FRPGVLTALMGVSGAGKTTLMDVLAGRK 935 (1403)
Q Consensus 908 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 935 (1403)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999999999854
No 481
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.27 E-value=0.021 Score=60.87 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 482
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.26 E-value=0.015 Score=68.96 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4677889999999999999999999995
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.24 E-value=0.021 Score=59.78 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGK 220 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1403)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
No 484
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.23 E-value=0.42 Score=66.07 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=29.6
Q ss_pred eeceE--EEEeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 187 LKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 187 L~~vs--~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
|+.+- +-+++|+++.|.||||+|||||+..++...
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 44444 359999999999999999999999999765
No 485
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.20 E-value=0.02 Score=59.99 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHhhcCC
Q 037155 913 LTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 913 ~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 486
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.19 E-value=0.024 Score=60.65 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999765
No 487
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.2 Score=59.99 Aligned_cols=28 Identities=50% Similarity=0.842 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++|.+=+++.||||+|||+|.+++|+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455558899999999999999999876
No 488
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.18 E-value=0.054 Score=66.30 Aligned_cols=28 Identities=54% Similarity=0.833 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 194 i~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998754
No 489
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.15 E-value=0.018 Score=61.09 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcccc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAGKLH 222 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG~~~ 222 (1403)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999986653
No 490
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.14 E-value=0.019 Score=60.33 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAG 933 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g 933 (1403)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 491
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.11 E-value=0.023 Score=64.58 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
..|.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998654
No 492
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.10 E-value=0.023 Score=58.55 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 037155 199 MTLLLGPPGAGKTTLMLAL 217 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~L 217 (1403)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 493
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.09 E-value=0.025 Score=58.81 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 037155 198 RMTLLLGPPGAGKTTLMLALAG 219 (1403)
Q Consensus 198 e~~~llGp~GsGKSTLL~~LaG 219 (1403)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 494
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.08 E-value=0.018 Score=61.58 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCchHHHHHhhcCC
Q 037155 911 GVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 911 Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 495
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.07 E-value=0.021 Score=60.76 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999865
No 496
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.05 E-value=0.085 Score=58.45 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred eCCeEEEEEccCCCchHHHHHhhcCC
Q 037155 909 RPGVLTALMGVSGAGKTTLMDVLAGR 934 (1403)
Q Consensus 909 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 934 (1403)
++..-+.|.||+|+|||||.+.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455789999999999999999864
No 497
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.00 E-value=0.021 Score=59.54 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 037155 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.++|+|||||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999765
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.99 E-value=0.14 Score=59.93 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 195 ~~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
++..-++|.||+|+|||||.++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445567899999999999999999764
No 499
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.98 E-value=0.022 Score=59.57 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhccc
Q 037155 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1403)
Q Consensus 196 ~Ge~~~llGp~GsGKSTLL~~LaG~~ 221 (1403)
.+..++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999999543
No 500
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.94 E-value=0.044 Score=62.59 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEeCCeEEEEEccCCCchHHHHHhhc
Q 037155 907 AFRPGVLTALMGVSGAGKTTLMDVLA 932 (1403)
Q Consensus 907 ~i~~Ge~~al~G~nGaGKSTLl~~L~ 932 (1403)
-+.+| ++-|.||+|+|||||.--++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 47889 89999999999999955443
Done!