BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037159
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 336
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLN 58
+W ++ ++L+ IF L + +L+ VS VC W + D LW+TLDL
Sbjct: 8 SWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLDLT 55
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 272
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD 56
+W ++ ++L+ IF L + +L+ VS VC W + D LW+TLD
Sbjct: 8 SWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLD 53
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD 56
+W ++ ++L+ IF L + +L+ VS VC W + D LW+TLD
Sbjct: 8 SWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLD 53
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 193 SLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQ 251
++ +PEL+ L ++I D N L + L SLEALN+ L +P+ P L ++
Sbjct: 225 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284
Query: 252 LDNFILG 258
+N G
Sbjct: 285 SENIFSG 291
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLL 247
LD + +PEL L L D N L + L SLE L++ + L +P+ P L
Sbjct: 125 LDVDNNQLTXLPELPAL-LEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPESLE 183
Query: 248 AIEQLDNFI 256
A++ N +
Sbjct: 184 ALDVSTNLL 192
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPL 246
LD + ++PEL SL+ VD N L + L LE +N + L +P+ P L
Sbjct: 105 LDACDNRLSTLPELPA-SLKHLDVDNNQLTXLPELPALLEYINADNNQLTXLPELPTSL 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,806,368
Number of Sequences: 62578
Number of extensions: 330730
Number of successful extensions: 850
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 16
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)