Query 037159
Match_columns 307
No_of_seqs 318 out of 2189
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.9 6.6E-28 1.4E-32 202.1 10.0 231 4-238 91-352 (419)
2 KOG4341 F-box protein containi 99.9 9.3E-25 2E-29 190.6 7.7 207 10-238 72-308 (483)
3 KOG4341 F-box protein containi 99.7 2.6E-17 5.6E-22 144.3 2.6 208 25-240 176-388 (483)
4 PF12937 F-box-like: F-box-lik 99.5 3.2E-14 7E-19 89.4 2.6 46 11-57 1-46 (47)
5 KOG1947 Leucine rich repeat pr 99.3 7.6E-12 1.7E-16 117.5 8.7 138 97-234 187-331 (482)
6 KOG1947 Leucine rich repeat pr 99.3 1.9E-11 4.1E-16 114.8 10.5 150 109-269 173-329 (482)
7 KOG2120 SCF ubiquitin ligase, 99.2 4.1E-11 8.8E-16 101.7 5.5 141 96-239 183-328 (419)
8 cd00116 LRR_RI Leucine-rich re 99.1 3.7E-09 8E-14 94.1 15.4 138 98-237 108-263 (319)
9 cd00116 LRR_RI Leucine-rich re 99.0 2E-08 4.3E-13 89.3 15.6 141 97-238 136-292 (319)
10 smart00256 FBOX A Receptor for 98.9 2.6E-09 5.7E-14 64.7 3.8 40 14-54 1-40 (41)
11 PF00646 F-box: F-box domain; 98.8 5E-10 1.1E-14 70.6 -0.4 43 10-53 2-44 (48)
12 KOG3207 Beta-tubulin folding c 98.8 5.6E-09 1.2E-13 93.0 3.8 121 118-240 140-262 (505)
13 KOG3665 ZYG-1-like serine/thre 98.5 1.7E-07 3.7E-12 91.1 7.5 148 85-234 108-285 (699)
14 KOG1909 Ran GTPase-activating 98.5 2.2E-06 4.8E-11 74.7 12.0 141 97-238 91-255 (382)
15 KOG1909 Ran GTPase-activating 98.4 4.1E-06 8.9E-11 73.0 10.7 119 117-236 178-310 (382)
16 KOG3207 Beta-tubulin folding c 98.3 1.2E-07 2.5E-12 84.7 0.7 137 96-238 144-285 (505)
17 PF14580 LRR_9: Leucine-rich r 98.3 1.5E-07 3.4E-12 75.9 -0.2 129 99-236 20-152 (175)
18 PF14580 LRR_9: Leucine-rich r 98.2 4.9E-07 1.1E-11 73.0 0.8 129 123-268 18-147 (175)
19 KOG3665 ZYG-1-like serine/thre 98.2 3.5E-06 7.5E-11 82.2 6.4 63 123-185 121-183 (699)
20 KOG3864 Uncharacterized conser 97.9 1.5E-05 3.2E-10 64.7 4.1 85 152-238 103-190 (221)
21 KOG2997 F-box protein FBX9 [Ge 97.8 8.6E-06 1.9E-10 69.9 2.4 49 11-60 107-160 (366)
22 PLN00113 leucine-rich repeat r 97.7 4.9E-05 1.1E-09 78.0 6.0 12 123-134 163-174 (968)
23 PLN00113 leucine-rich repeat r 97.7 4.7E-05 1E-09 78.1 5.7 108 123-235 139-247 (968)
24 COG5238 RNA1 Ran GTPase-activa 97.6 0.0015 3.2E-08 55.7 12.4 43 120-162 88-132 (388)
25 KOG4194 Membrane glycoprotein 97.6 3.6E-05 7.8E-10 71.7 2.4 111 122-240 315-432 (873)
26 KOG0618 Serine/threonine phosp 97.6 3.5E-05 7.6E-10 75.1 2.3 119 110-238 370-490 (1081)
27 KOG3864 Uncharacterized conser 97.5 0.00012 2.5E-09 59.5 3.5 61 123-184 124-185 (221)
28 KOG2982 Uncharacterized conser 97.4 8.9E-05 1.9E-09 63.7 2.5 106 129-234 50-156 (418)
29 PLN03210 Resistant to P. syrin 97.4 0.00012 2.6E-09 76.3 3.3 108 123-239 777-884 (1153)
30 PLN03210 Resistant to P. syrin 97.3 0.00022 4.7E-09 74.4 4.5 130 98-239 778-908 (1153)
31 COG5238 RNA1 Ran GTPase-activa 97.3 0.0062 1.3E-07 52.1 11.6 145 95-239 89-257 (388)
32 PLN03215 ascorbic acid mannose 97.2 0.00027 5.9E-09 63.5 3.6 38 9-47 2-40 (373)
33 KOG0281 Beta-TrCP (transducin 97.2 0.00024 5.1E-09 61.9 2.3 45 11-56 75-123 (499)
34 KOG2123 Uncharacterized conser 97.1 0.00015 3.3E-09 61.7 0.9 15 147-161 38-52 (388)
35 smart00367 LRR_CC Leucine-rich 96.9 0.001 2.2E-08 35.5 2.7 23 198-220 1-24 (26)
36 PF12799 LRR_4: Leucine Rich r 96.9 0.001 2.2E-08 40.6 2.8 38 199-238 1-38 (44)
37 smart00367 LRR_CC Leucine-rich 96.9 0.0016 3.4E-08 34.8 3.1 24 123-146 1-24 (26)
38 KOG2739 Leucine-rich acidic nu 96.8 0.00034 7.4E-09 59.0 0.0 109 124-238 43-157 (260)
39 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 56.2 2.5 89 174-272 64-154 (260)
40 KOG1259 Nischarin, modulator o 96.6 0.0015 3.2E-08 56.5 2.9 109 121-237 304-412 (490)
41 KOG2982 Uncharacterized conser 96.6 0.0019 4.1E-08 55.8 3.3 104 105-209 52-156 (418)
42 KOG0444 Cytoskeletal regulator 96.4 0.00036 7.8E-09 65.9 -2.3 59 175-236 222-280 (1255)
43 PF13855 LRR_8: Leucine rich r 96.4 0.0001 2.2E-09 48.6 -4.4 38 197-235 23-60 (61)
44 PF13855 LRR_8: Leucine rich r 96.3 0.00016 3.4E-09 47.6 -3.8 15 196-210 46-60 (61)
45 PLN03150 hypothetical protein; 96.3 0.0055 1.2E-07 59.8 4.8 106 126-235 420-526 (623)
46 KOG4194 Membrane glycoprotein 95.9 0.0016 3.5E-08 61.1 -0.8 82 150-234 173-255 (873)
47 PF13516 LRR_6: Leucine Rich r 95.9 0.007 1.5E-07 31.5 2.0 23 198-220 1-23 (24)
48 PF12799 LRR_4: Leucine Rich r 95.7 0.011 2.4E-07 36.0 2.8 37 124-163 1-37 (44)
49 KOG1644 U2-associated snRNP A' 95.6 0.0044 9.5E-08 50.6 0.8 86 147-234 61-150 (233)
50 PF13516 LRR_6: Leucine Rich r 95.4 0.013 2.9E-07 30.4 2.0 23 149-171 1-23 (24)
51 KOG4658 Apoptotic ATPase [Sign 95.4 0.02 4.3E-07 57.9 4.6 109 121-235 568-679 (889)
52 PLN03150 hypothetical protein; 94.8 0.026 5.7E-07 55.1 3.6 83 151-236 419-502 (623)
53 smart00368 LRR_RI Leucine rich 94.7 0.05 1.1E-06 29.5 3.1 25 199-223 2-26 (28)
54 KOG1859 Leucine-rich repeat pr 94.7 0.0035 7.5E-08 60.4 -2.6 105 122-235 185-290 (1096)
55 KOG1259 Nischarin, modulator o 94.7 0.012 2.6E-07 51.0 0.9 59 147-212 281-342 (490)
56 KOG0444 Cytoskeletal regulator 94.6 0.0025 5.5E-08 60.4 -3.6 18 222-239 337-354 (1255)
57 KOG2123 Uncharacterized conser 94.2 0.012 2.6E-07 50.6 -0.3 79 150-233 19-97 (388)
58 PRK15387 E3 ubiquitin-protein 93.4 0.026 5.7E-07 56.0 0.6 11 123-133 241-251 (788)
59 PRK15387 E3 ubiquitin-protein 92.9 0.093 2E-06 52.3 3.5 50 124-184 222-271 (788)
60 KOG4237 Extracellular matrix p 92.1 0.11 2.3E-06 47.0 2.4 85 145-231 269-353 (498)
61 KOG3763 mRNA export factor TAP 92.0 0.27 6E-06 46.2 5.1 44 117-160 211-254 (585)
62 KOG1859 Leucine-rich repeat pr 92.0 0.1 2.2E-06 50.7 2.4 37 197-236 185-221 (1096)
63 KOG4658 Apoptotic ATPase [Sign 91.8 0.17 3.6E-06 51.4 3.8 111 122-235 543-653 (889)
64 KOG3763 mRNA export factor TAP 91.3 0.42 9.1E-06 45.0 5.5 88 142-231 210-308 (585)
65 KOG0274 Cdc4 and related F-box 91.1 0.078 1.7E-06 50.7 0.6 44 11-55 108-152 (537)
66 PF13013 F-box-like_2: F-box-l 91.0 0.28 6.1E-06 36.2 3.3 30 10-40 21-50 (109)
67 KOG4308 LRR-containing protein 91.0 0.1 2.2E-06 49.1 1.3 62 99-162 116-184 (478)
68 KOG0618 Serine/threonine phosp 90.8 0.033 7.1E-07 55.2 -2.2 82 148-238 381-465 (1081)
69 KOG0472 Leucine-rich repeat pr 90.7 0.29 6.3E-06 44.4 3.7 39 197-237 503-541 (565)
70 smart00368 LRR_RI Leucine rich 90.6 0.4 8.6E-06 25.9 2.9 23 150-172 2-24 (28)
71 KOG4579 Leucine-rich repeat (L 89.7 0.13 2.8E-06 39.8 0.6 109 125-237 28-136 (177)
72 KOG1644 U2-associated snRNP A' 88.3 0.41 8.8E-06 39.4 2.6 83 149-236 41-125 (233)
73 PF13504 LRR_7: Leucine rich r 88.3 0.41 8.9E-06 22.5 1.6 11 225-235 2-12 (17)
74 PF07723 LRR_2: Leucine Rich R 88.2 0.31 6.7E-06 25.9 1.3 25 200-224 1-26 (26)
75 PRK15370 E3 ubiquitin-protein 87.9 0.4 8.8E-06 47.8 2.9 78 150-235 346-426 (754)
76 KOG4308 LRR-containing protein 87.7 0.39 8.4E-06 45.3 2.5 34 202-235 265-301 (478)
77 KOG4579 Leucine-rich repeat (L 87.5 0.28 6.2E-06 37.9 1.2 84 123-211 52-135 (177)
78 PRK15386 type III secretion pr 86.1 0.68 1.5E-05 42.6 3.1 117 97-238 51-170 (426)
79 KOG0617 Ras suppressor protein 85.8 0.013 2.7E-07 46.9 -7.1 35 197-234 148-183 (264)
80 KOG0617 Ras suppressor protein 84.4 0.21 4.7E-06 40.0 -0.8 104 124-233 33-136 (264)
81 KOG0531 Protein phosphatase 1, 84.3 0.28 6E-06 45.5 -0.3 106 123-239 94-201 (414)
82 KOG0472 Leucine-rich repeat pr 84.3 1.3 2.9E-05 40.3 3.9 88 121-212 432-541 (565)
83 PF09372 PRANC: PRANC domain; 84.2 0.81 1.7E-05 33.0 2.2 25 9-33 70-94 (97)
84 KOG2502 Tub family proteins [G 81.4 0.87 1.9E-05 40.3 1.7 51 9-59 43-104 (355)
85 COG4886 Leucine-rich repeat (L 80.7 0.77 1.7E-05 42.1 1.2 38 197-237 253-290 (394)
86 PRK15370 E3 ubiquitin-protein 79.3 3 6.5E-05 41.8 4.8 88 123-219 345-435 (754)
87 KOG0531 Protein phosphatase 1, 77.4 0.65 1.4E-05 43.1 -0.4 108 122-240 70-178 (414)
88 KOG3926 F-box proteins [Amino 77.4 1.4 2.9E-05 37.8 1.5 54 2-56 193-247 (332)
89 COG4886 Leucine-rich repeat (L 76.8 1.5 3.2E-05 40.2 1.8 83 124-212 116-199 (394)
90 PF00560 LRR_1: Leucine Rich R 73.1 1.6 3.5E-05 21.8 0.6 10 225-234 1-10 (22)
91 KOG4237 Extracellular matrix p 71.1 2 4.3E-05 39.1 1.1 87 120-210 270-357 (498)
92 smart00370 LRR Leucine-rich re 68.7 4.1 8.8E-05 21.1 1.6 12 199-210 2-13 (26)
93 smart00369 LRR_TYP Leucine-ric 68.7 4.1 8.8E-05 21.1 1.6 12 199-210 2-13 (26)
94 PRK15386 type III secretion pr 65.5 9.7 0.00021 35.3 4.3 92 122-233 50-141 (426)
95 KOG3735 Tropomodulin and leiom 65.4 17 0.00036 32.5 5.5 86 140-225 188-281 (353)
96 smart00365 LRR_SD22 Leucine-ri 55.8 11 0.00023 20.0 1.7 14 199-212 2-15 (26)
97 PF07735 FBA_2: F-box associat 33.5 1.4E+02 0.003 19.4 5.9 52 175-231 11-69 (70)
98 PF12586 DUF3760: Protein of u 32.9 18 0.0004 22.1 0.5 40 16-57 6-45 (46)
99 smart00446 LRRcap occurring C- 29.7 43 0.00093 17.7 1.5 16 218-233 7-22 (26)
100 PF13306 LRR_5: Leucine rich r 27.3 8.4 0.00018 28.6 -2.2 102 122-233 10-112 (129)
101 KOG3735 Tropomodulin and leiom 23.0 2.5E+02 0.0055 25.3 5.9 28 114-141 188-215 (353)
102 PF03382 DUF285: Mycoplasma pr 22.0 47 0.001 24.8 1.1 10 143-152 29-38 (120)
103 smart00364 LRR_BAC Leucine-ric 21.7 53 0.0012 17.4 0.9 13 199-211 2-14 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.6e-28 Score=202.12 Aligned_cols=231 Identities=19% Similarity=0.244 Sum_probs=172.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccc--cc--------------cccc
Q 037159 4 QGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLL--CN--------------AFDI 67 (307)
Q Consensus 4 ~~~~~~~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~--~~--------------~~~~ 67 (307)
...++.+|+.|||||+..||+.|..+++++ ++.|||+|++++++.++|...|+..-. +. ....
T Consensus 91 ~~npgv~~~slpDEill~IFs~L~kk~LL~-~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~ 169 (419)
T KOG2120|consen 91 ENNPGVSWDSLPDEILLGIFSCLCKKELLK-VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARS 169 (419)
T ss_pred ccCCCCCcccCCHHHHHHHHHhccHHHHHH-HHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchh
Confidence 344667799999999999999999999999 999999999999999999999976431 00 0000
Q ss_pred cCCCCC-c--cccCC--CCHHHHH-----HHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCC
Q 037159 68 LPSNSN-G--LSDGH--SSWLNAM-----HILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEI 137 (307)
Q Consensus 68 ~~~~~~-~--~~~~~--~~~~~l~-----~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~ 137 (307)
..+.+. + +.+-+ ....++. .---..+-..|..++.+.+++ ..++|.....||++ .+|+.|+|++|.++
T Consensus 170 ~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 170 FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGF 247 (419)
T ss_pred hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc-ccceeecccccccc
Confidence 001110 0 00000 0000000 000011223466778887776 56688888888875 89999999999999
Q ss_pred CHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHH-hcCCCCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCC-CC
Q 037159 138 TVDGFRSAIQWWKGLESLTVPFISNASSIIQVIG-ANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSI-VD 212 (307)
Q Consensus 138 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~-~~c~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it 212 (307)
+..++..++..|..|.+|+|++|..+.+.+..+. .-.++|+.|+++|+ +.+..+..++..||+|.+|+|+.|. ++
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 9999999999999999999999987555454443 34589999999987 5567788888999999999999998 88
Q ss_pred HHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 213 KNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 213 ~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+ +....+..++.|++|.++.|+.+.
T Consensus 328 ~-~~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 328 N-DCFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred c-hHHHHHHhcchheeeehhhhcCCC
Confidence 8 555666779999999999999886
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.91 E-value=9.3e-25 Score=190.63 Aligned_cols=207 Identities=20% Similarity=0.287 Sum_probs=137.1
Q ss_pred CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccccccccccCCCCCccccCCCCHHHHHHHH
Q 037159 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHIL 89 (307)
Q Consensus 10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 89 (307)
+|. ||+|++..||++|+...+.+ +++||+.|...+.|...|++||+...+.... ++ .+
T Consensus 72 ~~~-LPpEl~lkvFS~LDtksl~r-~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~-----g~---------------VV 129 (483)
T KOG4341|consen 72 SRS-LPPELLLKVFSMLDTKSLCR-AAQCCTMWNKLALDGSCWQHIDLFTFQRDVD-----GG---------------VV 129 (483)
T ss_pred ccc-CCHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhccccceeeehhcchhcCC-----Cc---------------ce
Confidence 354 99999999999999999999 9999999999999999999999876521110 00 01
Q ss_pred HHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHH
Q 037159 90 NNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQ 168 (307)
Q Consensus 90 ~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~ 168 (307)
...+++.++.++++.+.++..+.++.+...+..|||+++|.+.+|..+|+..+..+...|++|++|++..|. +++..++
T Consensus 130 ~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 130 ENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 122334445555555555555555555555555555555555555555555555555555555555555543 3555555
Q ss_pred HHHhcCCCCceEEee--------------------------cc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHH
Q 037159 169 VIGANCKNFSMLKVM--------------------------FS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLI 219 (307)
Q Consensus 169 ~i~~~c~~L~~L~l~--------------------------~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l 219 (307)
.+++.|++|+.|+++ +| .+++.+..++..++.+..+++..|. +||+++..+
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 555555555555554 33 2344445555667777777777777 888888888
Q ss_pred HHcCCCCcEEeccCCcCCC
Q 037159 220 LTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 220 ~~~~~~L~~L~l~~C~~i~ 238 (307)
..+|..|+.|+.++|..++
T Consensus 290 ~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred hhhhhHhhhhcccCCCCCc
Confidence 8888888888888888877
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.66 E-value=2.6e-17 Score=144.32 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=151.6
Q ss_pred cCChHHHhhHHhhhhHHHHHhcCCC-CcceeeecCccccccccccCCCCCccccCCCCHHHHHHHHHHHHHhcCCCccEE
Q 037159 25 ALRVTDLIFAVSKVCSSWRAASRDP-VLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRL 103 (307)
Q Consensus 25 ~L~~~d~~~~~s~VCk~Wr~~~~~p-~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~~l~~L 103 (307)
+++...... ++.+|+.|+.+...+ ..|..+.+......+.+. ..-...|.+..+.+ .+. +..+.+..++.+
T Consensus 176 ~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL-~~lNlSwc~qi~~~-gv~-----~~~rG~~~l~~~ 247 (483)
T KOG4341|consen 176 KITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL-KYLNLSWCPQISGN-GVQ-----ALQRGCKELEKL 247 (483)
T ss_pred eccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH-HHhhhccCchhhcC-cch-----HHhccchhhhhh
Confidence 566666666 999999999999887 788777655332223322 10111122111110 111 222333345555
Q ss_pred EeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcCCCCceEEe
Q 037159 104 IFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANCKNFSMLKV 182 (307)
Q Consensus 104 ~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c~~L~~L~l 182 (307)
...+|....++.+..++.+++-+.++++..|..+||.++..+...|..|+.|+.++|. +++.++.+++++|++|+.|-+
T Consensus 248 ~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l 327 (483)
T KOG4341|consen 248 SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLEL 327 (483)
T ss_pred hhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEec
Confidence 5566777788888888888888888888888888888888888888888888888875 588888888888888888888
Q ss_pred ecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159 183 MFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIP 240 (307)
Q Consensus 183 ~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~~ 240 (307)
.++ +++..+..++.+++.|+.|++.++. +++..+..+..+||.|+.|.+++|..+|+.
T Consensus 328 ~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 328 SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 777 7788888888888888888888888 777778888888888888888888888855
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.45 E-value=3.2e-14 Score=89.41 Aligned_cols=46 Identities=37% Similarity=0.657 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeec
Q 037159 11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL 57 (307)
Q Consensus 11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l 57 (307)
|..||+||+.+||+||+..|+.+ +++|||+|++++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~-~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLR-LSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHH-HTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHCChhhhhhhcc
Confidence 78999999999999999999999 99999999999988999998764
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.29 E-value=7.6e-12 Score=117.51 Aligned_cols=138 Identities=20% Similarity=0.266 Sum_probs=81.8
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCC-CCCCCHH--HHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHh
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPP-CNEITVD--GFRSAIQWWKGLESLTVPFIS-NASSIIQVIGA 172 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~-~~~~~~~--~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~ 172 (307)
+..++.+.+..+..+++..+..++..+++|+.|++++ +...+.. ........|++|++|+++++. +++.++..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555666666556666666666666666666666665 2222222 233345556666666666665 56666666666
Q ss_pred cCCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159 173 NCKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 173 ~c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
.|++|+.|.+..+ +++.++..++..+|+|++|+|++|. +++.++..++.+||+|+.|.+..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 6666666665444 3566666666666666666666666 666666666666666555544333
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=114.83 Aligned_cols=150 Identities=23% Similarity=0.247 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCC-C---CCHHHHHHHHhcCCCCceEEeec
Q 037159 109 IYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFI-S---NASSIIQVIGANCKNFSMLKVMF 184 (307)
Q Consensus 109 ~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~---~~~~~l~~i~~~c~~L~~L~l~~ 184 (307)
...+...+..+...+|+|+.|.+.+|..+++.++..++..+++|++|+++++ . ........++..|++|+.|+++.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 3456677777887899999999999999999999999999999999999973 2 23444556888899999999977
Q ss_pred c--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhhhhHHHHHHhh
Q 037159 185 S--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKAS 261 (307)
Q Consensus 185 ~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~~~~~~~ 261 (307)
+ ++|..+..++..||+|++|.+.+|. +|++++..++..||+|++|+|++|..++.. .+.. +...++
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----------~l~~-~~~~c~ 321 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----------GLEA-LLKNCP 321 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH----------HHHH-HHHhCc
Confidence 6 6889999999899999999999999 999999999999999999999999999632 1122 355566
Q ss_pred cchhhhhc
Q 037159 262 RLREFFTC 269 (307)
Q Consensus 262 ~l~~l~~~ 269 (307)
+++++...
T Consensus 322 ~l~~l~~~ 329 (482)
T KOG1947|consen 322 NLRELKLL 329 (482)
T ss_pred chhhhhhh
Confidence 66665544
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.1e-11 Score=101.67 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=115.5
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcC
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANC 174 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c 174 (307)
+..++++++++. ..++...+..+...|..|+.|.|.+. +++|.....++ +-.+|+.|+|+.|. ++..++..+..+|
T Consensus 183 frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 183 FRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhh
Confidence 345677777764 56678888999999999999999865 47776555554 77899999999987 6899999999999
Q ss_pred CCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC--CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 175 KNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI--VDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 175 ~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~--it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
..|.+|+++.| +.+.....++.--++|+.|+|+|+. +-+..+..+...||+|.+||+++|..++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 99999999988 3444333344456899999999997 77778889999999999999999999874
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=3.7e-09 Score=94.08 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=91.9
Q ss_pred CCccEEEeccCCCCCHHHHHHHH---hhC-CCccEEecCCCCCCCHH---HHHHHHhcCCCCCeEEecCCCCCHHHHHHH
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAA---TRF-PMVKHLALPPCNEITVD---GFRSAIQWWKGLESLTVPFISNASSIIQVI 170 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~---~~~-~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i 170 (307)
.++++++++.+. +++..+..+. ..+ ++|+.|++++|. ++.. .+...+..++.|++|++++|.+++..+..+
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 568888887654 4444444433 234 788888888775 5433 244445667788888888888776665555
Q ss_pred Hhc---CCCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHHcC----CCCcEEeccCCcCC
Q 037159 171 GAN---CKNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIVDKNALNLILTLM----GSLEALNISHCLLG 237 (307)
Q Consensus 171 ~~~---c~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~~----~~L~~L~l~~C~~i 237 (307)
+.. +++|++|+++++ +.+.....+ ...+|+|++|++++|.+++.++..+...+ +.|++|++++|...
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 433 358888888765 444443333 34677888888888888887777777665 68888888888543
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=2e-08 Score=89.34 Aligned_cols=141 Identities=19% Similarity=0.144 Sum_probs=104.1
Q ss_pred CCCccEEEeccCCCCCH--HHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHH
Q 037159 97 CKTVKRLIFNYSIYLKD--EHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIG 171 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d--~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~ 171 (307)
..+++++.+..+..... ..+......+++|++|+++++. +++.++..+ +..+++|++|++++|.+++.....+.
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 36899999988665432 2233334457899999999865 776665554 34567999999999998766655544
Q ss_pred ---hcCCCCceEEeecc-CCHHHHHHHHhcC----CCCCEEEecCCCCCHHHHHHH---HHcCCCCcEEeccCCcCCC
Q 037159 172 ---ANCKNFSMLKVMFS-FDLDFAMSLFMSI----PELKVLSLRSSIVDKNALNLI---LTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 172 ---~~c~~L~~L~l~~~-~~~~~~~~l~~~~----p~L~~L~L~~~~it~~~l~~l---~~~~~~L~~L~l~~C~~i~ 238 (307)
..+++|++|+++++ +.+..+..++..+ +.|++|++.+|.+++.+...+ +..+++|++|+++++..-+
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 45789999999876 6666666666554 799999999999987776554 4445789999999987654
No 10
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.86 E-value=2.6e-09 Score=64.73 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=37.6
Q ss_pred CCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCccee
Q 037159 14 MHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWET 54 (307)
Q Consensus 14 LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~ 54 (307)
||+|++..||.+|+..|+.. ++.|||+|+.++.++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~-~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLR-LRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcChhhhhc
Confidence 79999999999999999998 99999999999988888864
No 11
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.83 E-value=5e-10 Score=70.57 Aligned_cols=43 Identities=30% Similarity=0.552 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcce
Q 037159 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWE 53 (307)
Q Consensus 10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~ 53 (307)
.|.+||+|++.+||++|+..|++. +++|||+|++++.++.+|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~-l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLR-LSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHH-HCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHH-HHHHhhHHHHHHcCCCccH
Confidence 367899999999999999999998 9999999999998777765
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.6e-09 Score=92.98 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHh
Q 037159 118 YAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFM 196 (307)
Q Consensus 118 ~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~ 196 (307)
..++.||+++.|+|+..-......+..++.++|+|+.|+|+.+.+....-.......+.|+.|.+++| +.-..+..++.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 45566777777777766544566677777777777777777765311100111113466777777666 55666666666
Q ss_pred cCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159 197 SIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIP 240 (307)
Q Consensus 197 ~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~~ 240 (307)
.+|+|+.|.|.+|. +....... .....|+.|||++...++..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccc
Confidence 77777777777773 22222111 12345667777777776643
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.54 E-value=1.7e-07 Score=91.13 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=95.8
Q ss_pred HHHHHHHHHH-hcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCC
Q 037159 85 AMHILNNASI-LSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA 163 (307)
Q Consensus 85 l~~~l~~~~~-~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 163 (307)
+..+++..+. .++.+|++|++++...++......++..+|+|++|.+.+-. +..+.|..+...+|+|..||+|++.++
T Consensus 108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCcc
Confidence 3344444332 45678999999998888999999999999999999998755 555568899999999999999998764
Q ss_pred HH-----------------------HHHHHHhcCCCCceEEeeccCC--HH-HHH---HHHhcCCCCCEEEecCCCCCHH
Q 037159 164 SS-----------------------IIQVIGANCKNFSMLKVMFSFD--LD-FAM---SLFMSIPELKVLSLRSSIVDKN 214 (307)
Q Consensus 164 ~~-----------------------~l~~i~~~c~~L~~L~l~~~~~--~~-~~~---~l~~~~p~L~~L~L~~~~it~~ 214 (307)
+- .+..+. ..++|+.|+++.... +. .+. +....+|+||.|+.+|+.++.+
T Consensus 187 nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 187 NLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred CcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 32 111221 235555555554311 11 111 1122456666666666666666
Q ss_pred HHHHHHHcCCCCcEEeccCC
Q 037159 215 ALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 215 ~l~~l~~~~~~L~~L~l~~C 234 (307)
.+..++..-|+|+.+.+-+|
T Consensus 266 ~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 266 ILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHHHHHHhCccHhhhhhhhh
Confidence 66666666666665554433
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=2.2e-06 Score=74.68 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCccEEEeccCCCCCH--HHHHHHHhhCCCccEEecCCCCCCCHHH------------HHHHHhcCCCCCeEEecCCCC
Q 037159 97 CKTVKRLIFNYSIYLKD--EHLVYAATRFPMVKHLALPPCNEITVDG------------FRSAIQWWKGLESLTVPFISN 162 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d--~~l~~i~~~~~~L~~L~L~~~~~~~~~~------------l~~~~~~~~~L~~L~L~~~~~ 162 (307)
+++++.++|+.+-+-.+ +.+..+...|..|++|.|.+|. +...+ ....+..-|.|+.+..+.|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 34788888876544332 4455556668888888888775 43322 111223445666666666654
Q ss_pred C---HHHHHHHHhcCCCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHH---HHHHcCCCCcEEecc
Q 037159 163 A---SSIIQVIGANCKNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIVDKNALN---LILTLMGSLEALNIS 232 (307)
Q Consensus 163 ~---~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~---~l~~~~~~L~~L~l~ 232 (307)
. ...+....+.+|.|+.+++... +..+++..+ ..+||+|+.|+|..|.+|.++=. ..+...|+|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 2 2333334455566666666433 222222111 24566666666666666555432 233344566666666
Q ss_pred CCcCCC
Q 037159 233 HCLLGQ 238 (307)
Q Consensus 233 ~C~~i~ 238 (307)
+|-.-+
T Consensus 250 dcll~~ 255 (382)
T KOG1909|consen 250 DCLLEN 255 (382)
T ss_pred cccccc
Confidence 665443
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=4.1e-06 Score=73.04 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred HHHHhhCCCccEEecCCCCCCCHHH---HHHHHhcCCCCCeEEecCCCCCHHHHHHHHh---cCCCCceEEeecc-CCHH
Q 037159 117 VYAATRFPMVKHLALPPCNEITVDG---FRSAIQWWKGLESLTVPFISNASSIIQVIGA---NCKNFSMLKVMFS-FDLD 189 (307)
Q Consensus 117 ~~i~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~---~c~~L~~L~l~~~-~~~~ 189 (307)
..+.+.+|.|+.+.++... +..++ +...+.+||+|+.|||..|.++..+-..++. ..|+|+.|+++.| ..+.
T Consensus 178 A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 3334445666666665332 33222 2233455666666666666554444333332 2345566666555 2222
Q ss_pred H----HHHHHhcCCCCCEEEecCCCCCHHHHHHHHHc---CCCCcEEeccCCcC
Q 037159 190 F----AMSLFMSIPELKVLSLRSSIVDKNALNLILTL---MGSLEALNISHCLL 236 (307)
Q Consensus 190 ~----~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~---~~~L~~L~l~~C~~ 236 (307)
+ +.++.+..|+|+.|.+.+|.||.++...+... -|.|+.|+|++|..
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 22333445666666666666665554433222 36666666666655
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-07 Score=84.73 Aligned_cols=137 Identities=13% Similarity=0.066 Sum_probs=82.3
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCC--CHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhc
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEI--TVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGAN 173 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~ 173 (307)
.+.+++.|+++.+-+..=..+..+++..|+|+.|+|+...-. .+.. ....++.|+.|.|+.|.++-..+..+...
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 456777777776655566677788888899998888754311 1111 11156778888888888877777777788
Q ss_pred CCCCceEEeeccC---CHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 174 CKNFSMLKVMFSF---DLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 174 c~~L~~L~l~~~~---~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
||+|+.|.+.+.- ...... +.+..|+.|+|++|.+-+.........+|.|+.|+++.|..-+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred CCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence 8888888886541 000011 1234566666666653333323334445666666665555433
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=1.5e-07 Score=75.87 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=49.7
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
++++|++.++.--. +..+...+.+|+.|+|+++.-.+-++ +..++.|+.|++++|.++.-. ..+...||+|+
T Consensus 20 ~~~~L~L~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQIST---IENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred cccccccccccccc---ccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence 34556665432211 23334446788999998765222222 345788999999988874321 23334678999
Q ss_pred eEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCHHH--HHHHHHcCCCCcEEeccCCcC
Q 037159 179 MLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDKNA--LNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 179 ~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~--l~~l~~~~~~L~~L~l~~C~~ 236 (307)
+|.+++. +.+ ..+..+ ..+|+|++|+|.+|.+++.. =..++..+|+|+.||-.....
T Consensus 92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred EEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 9998765 211 123333 36899999999998876443 235667789999988755544
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.17 E-value=4.9e-07 Score=72.95 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=49.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
+-+++.|+|.++. ++. +..+...+.+|+.|++++|.+.. +..+ ..+++|++|.++.. +..-. ..+...+|+|
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 4568999999764 432 33333467899999999998743 2222 23589999999765 22211 1233468999
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhhhhHHHHHHhhcchhhhh
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFT 268 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 268 (307)
++|.|++|.|.+-.-..-+..||+|+.|++.+.+..... .+ ...++...+.|+.+-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~Y-------R~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NY-------RLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST---TH-------HHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh---hH-------HHHHHHHcChhheeCC
Confidence 999999999776433344567999999999998875432 11 3567777766665433
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=3.5e-06 Score=82.16 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=53.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS 185 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~ 185 (307)
-.+|++|++++...++..-...+...+|.|++|.+++-.+..+-+..+..++|||..|++++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 368999999987767666677888899999999999988766668888899999999999865
No 20
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.5e-05 Score=64.65 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=67.0
Q ss_pred CCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcE
Q 037159 152 LESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEA 228 (307)
Q Consensus 152 L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~ 228 (307)
++.++-+++.+...+++.+. .++.|+.|.+..| ++|..+..+..-.|+|+.|+|++|. ||+.|+..+. .+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 56677777777778888774 4688888888666 7788888887778899999999998 9999987654 4889999
Q ss_pred EeccCCcCCC
Q 037159 229 LNISHCLLGQ 238 (307)
Q Consensus 229 L~l~~C~~i~ 238 (307)
|.|.+-..+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 9888776665
No 21
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.84 E-value=8.6e-06 Score=69.95 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHhc-----CChHHHhhHHhhhhHHHHHhcCCCCcceeeecCcc
Q 037159 11 WQNMHYDILVKIFMA-----LRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60 (307)
Q Consensus 11 w~~LP~eiL~~If~~-----L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~ 60 (307)
++.||+|||..||.. ++.+++.. ++.|||.|+..+++|.+|+..-+..+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~-~s~vCr~F~~~~R~~~lwR~aC~KvW 160 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQ-LSLVCRGFYKCARDPELWRLACLKVW 160 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHH-hHhhHHHHHHHHcChHHHHHHHHHHH
Confidence 567999999999976 67788988 99999999999999999997766555
No 22
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.71 E-value=4.9e-05 Score=77.97 Aligned_cols=12 Identities=33% Similarity=0.326 Sum_probs=5.8
Q ss_pred CCCccEEecCCC
Q 037159 123 FPMVKHLALPPC 134 (307)
Q Consensus 123 ~~~L~~L~L~~~ 134 (307)
+++|+.|+|+++
T Consensus 163 l~~L~~L~L~~n 174 (968)
T PLN00113 163 FSSLKVLDLGGN 174 (968)
T ss_pred CCCCCEEECccC
Confidence 445555555443
No 23
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.71 E-value=4.7e-05 Score=78.11 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.++|++|+|+++. ++. .+...+..+++|++|+|++|.+.......++ .+++|+.|+++++ ........+ ..+++|
T Consensus 139 l~~L~~L~Ls~n~-~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNM-LSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPREL-GQMKSL 214 (968)
T ss_pred cCCCCEEECcCCc-ccc-cCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHH-cCcCCc
Confidence 4566666666543 221 1223345677777777777664332222232 3466666666544 111111112 244555
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
++|+|++|.++.. +..-+..+++|++|++++|.
T Consensus 215 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 215 KWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred cEEECcCCccCCc-CChhHhcCCCCCEEECcCce
Confidence 5555555544321 11122344555555555443
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.63 E-value=0.0015 Score=55.73 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=28.9
Q ss_pred HhhCCCccEEecCCCCC--CCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159 120 ATRFPMVKHLALPPCNE--ITVDGFRSAIQWWKGLESLTVPFISN 162 (307)
Q Consensus 120 ~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~ 162 (307)
...||+|+..+|+.... -....+..++++-..|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34688888888875431 12345666777778888888887764
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.58 E-value=3.6e-05 Score=71.68 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=67.8
Q ss_pred hCCCccEEecCCCC--CCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-----CCHHHHHHH
Q 037159 122 RFPMVKHLALPPCN--EITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-----FDLDFAMSL 194 (307)
Q Consensus 122 ~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-----~~~~~~~~l 194 (307)
.|++|+.|+|+... .+....+. .+..|++|+|+.+.+..-. +.......+|+.|+|... +.| ....
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~----~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~IED--aa~~ 387 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFR----VLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNELSWCIED--AAVA 387 (873)
T ss_pred hcccceeEeccccccccCChhHHH----HHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCeEEEEEec--chhh
Confidence 46677777776432 12222222 3456777777766542211 112234478888888543 444 3333
Q ss_pred HhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159 195 FMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP 240 (307)
Q Consensus 195 ~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~ 240 (307)
...+|.|+.|.|.||.+..-.- ....++++||+||+.+...-+..
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~k-rAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPK-RAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hccchhhhheeecCceeeecch-hhhccCcccceecCCCCcceeec
Confidence 4569999999999998432221 23467999999999998877654
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.57 E-value=3.5e-05 Score=75.15 Aligned_cols=119 Identities=22% Similarity=0.202 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHhhCCCccEEecCCCC--CCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCC
Q 037159 110 YLKDEHLVYAATRFPMVKHLALPPCN--EITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFD 187 (307)
Q Consensus 110 ~~~d~~l~~i~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~ 187 (307)
.++|..+..+ ..+++||.|+|++.. .+.+. ...+++.|++|+||++.++.-. ..+ ..|+.|++|...+.--
T Consensus 370 ~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp-~tv-a~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 370 HLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLP-DTV-ANLGRLHTLRAHSNQL 442 (1081)
T ss_pred cccccchhhh-ccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhh-HHH-HhhhhhHHHhhcCCce
Confidence 4455555444 357899999999762 24443 3457889999999999764333 233 3468888888755411
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 188 ~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.... .++ .+|.|+.++++.|.++.-.+...+.. |+|++||++|.....
T Consensus 443 ~~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 443 LSFP-ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred eech-hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 1111 333 68999999999999988777665544 899999999988643
No 27
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00012 Score=59.55 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=32.8
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcCCCCceEEeec
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANCKNFSMLKVMF 184 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c~~L~~L~l~~ 184 (307)
++.|+.|.+.+|..+.|.++..+..-.|+|+.|+|++|. |++.++..+.+. ++|+.|.|..
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-knLr~L~l~~ 185 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-KNLRRLHLYD 185 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-hhhHHHHhcC
Confidence 455555555555555555555555555555555555554 455555555432 5555555543
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=8.9e-05 Score=63.75 Aligned_cols=106 Identities=15% Similarity=-0.000 Sum_probs=52.2
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEec
Q 037159 129 LALPPCNEITVDGFRSAIQWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLR 207 (307)
Q Consensus 129 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~ 207 (307)
|.+.+|..-+...+..+...+..+++|||.++.+++ ..+.+|.++.|.|+.|++++.--...+..+..-..+|+.|-|.
T Consensus 50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLN 129 (418)
T KOG2982|consen 50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLN 129 (418)
T ss_pred heecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEc
Confidence 334444322333344445555556666666555532 3444555555666666655431111111111123366666666
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 208 SSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 208 ~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
|.+++.......+...|.++.|+++..
T Consensus 130 gT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 130 GTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCCCChhhhhhhhhcchhhhhhhhccc
Confidence 666666666666666666666655544
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.37 E-value=0.00012 Score=76.35 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=56.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELK 202 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~ 202 (307)
+++|+.|+|+++..... +...+..+++|+.|+|++|..... +... ..+++|+.|++++|..-.. +....++|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~-LP~~-~~L~sL~~L~Ls~c~~L~~---~p~~~~nL~ 849 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET-LPTG-INLESLESLDLSGCSRLRT---FPDISTNIS 849 (1153)
T ss_pred cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe-eCCC-CCccccCEEECCCCCcccc---ccccccccC
Confidence 35677777776543322 333456778888888887742111 1100 1356777777766522111 111234566
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
+|+|.++.++. +..-+..+++|+.|++++|.+++.
T Consensus 850 ~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 850 DLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred EeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCc
Confidence 66666665542 222234566666666666665553
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.31 E-value=0.00022 Score=74.41 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=84.0
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+|+.|.++.+..+.. +..-...+++|+.|++++|..+.. +...+ .+++|+.|++++|.... .+....++|
T Consensus 778 ~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~----~~p~~~~nL 848 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLR----TFPDISTNI 848 (1153)
T ss_pred ccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccc----ccccccccc
Confidence 3566666655433221 111134589999999999876542 22222 58899999999986311 112223689
Q ss_pred ceEEeeccCCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 178 SMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 178 ~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
+.|++++..-......+ ..+++|+.|+|.+|. ++. +..-...+++|+.|++++|..++.
T Consensus 849 ~~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CEeECCCCCCccChHHH-hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence 99999765211222233 478999999999987 553 333345689999999999988864
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.26 E-value=0.0062 Score=52.08 Aligned_cols=145 Identities=15% Similarity=0.141 Sum_probs=96.4
Q ss_pred hcCCCccEEEeccCCCCC--HHHHHHHHhhCCCccEEecCCCCCCCHH------HHHHH-----HhcCCCCCeEEecCCC
Q 037159 95 LSCKTVKRLIFNYSIYLK--DEHLVYAATRFPMVKHLALPPCNEITVD------GFRSA-----IQWWKGLESLTVPFIS 161 (307)
Q Consensus 95 ~s~~~l~~L~l~~~~~~~--d~~l~~i~~~~~~L~~L~L~~~~~~~~~------~l~~~-----~~~~~~L~~L~L~~~~ 161 (307)
.-|++++.++++.+-+-. .+.+.-...+..+|++|.|.+|.--... ++..+ +..-|.|+......|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 457899999998765433 2334444445788999999987522211 12222 3456899999999887
Q ss_pred C---CHHHHHHHHhcCCCCceEEeecc-CCHHHHHHH----HhcCCCCCEEEecCCCCCHHHHHHH---HHcCCCCcEEe
Q 037159 162 N---ASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSL----FMSIPELKVLSLRSSIVDKNALNLI---LTLMGSLEALN 230 (307)
Q Consensus 162 ~---~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l----~~~~p~L~~L~L~~~~it~~~l~~l---~~~~~~L~~L~ 230 (307)
+ +........+.-.+|+.+++-.. +.++++..+ ..++.+|+.|+|..|.+|-.|-..+ +...+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 5 23333333344369999999554 555544433 3478999999999999887765444 34458899999
Q ss_pred ccCCcCCCc
Q 037159 231 ISHCLLGQI 239 (307)
Q Consensus 231 l~~C~~i~~ 239 (307)
+..|-.-+.
T Consensus 249 lnDClls~~ 257 (388)
T COG5238 249 LNDCLLSNE 257 (388)
T ss_pred ccchhhccc
Confidence 999977653
No 32
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.23 E-value=0.00027 Score=63.47 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHhcC-ChHHHhhHHhhhhHHHHHhcC
Q 037159 9 RNWQNMHYDILVKIFMAL-RVTDLIFAVSKVCSSWRAASR 47 (307)
Q Consensus 9 ~~w~~LP~eiL~~If~~L-~~~d~~~~~s~VCk~Wr~~~~ 47 (307)
.+|++||+|+|..|..+| ...|+++ .+.||+.||.++.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~-~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKR-FRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHH-HHhhhhhHHHhcc
Confidence 369999999999999999 6678888 9999999999875
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.16 E-value=0.00024 Score=61.88 Aligned_cols=45 Identities=24% Similarity=0.421 Sum_probs=41.3
Q ss_pred CCCCC----HHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159 11 WQNMH----YDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD 56 (307)
Q Consensus 11 w~~LP----~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~ 56 (307)
.+.|| ++|-..||+||+..+++. |-+|||+|+++..+|.+|+++-
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~-celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCA-CELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHhccchHHHHHH
Confidence 34689 999999999999999998 9999999999999999998764
No 34
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00015 Score=61.73 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=7.1
Q ss_pred hcCCCCCeEEecCCC
Q 037159 147 QWWKGLESLTVPFIS 161 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~ 161 (307)
.++|.|+.|.|+-|.
T Consensus 38 ~kMp~lEVLsLSvNk 52 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK 52 (388)
T ss_pred HhcccceeEEeeccc
Confidence 344445555554443
No 35
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.92 E-value=0.001 Score=35.55 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=12.5
Q ss_pred CCCCCEEEecCCC-CCHHHHHHHH
Q 037159 198 IPELKVLSLRSSI-VDKNALNLIL 220 (307)
Q Consensus 198 ~p~L~~L~L~~~~-it~~~l~~l~ 220 (307)
||+|++|+|++|. |||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 3555555555555 5555555543
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.89 E-value=0.001 Score=40.64 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=29.0
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 199 PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 199 p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+|++|++++|.|++ +...+.++++|+.|+++++..-+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 589999999999885 44546789999999999996544
No 37
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.85 E-value=0.0016 Score=34.84 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=18.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHH
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAI 146 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~ 146 (307)
||+|++|+|++|..++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577788888888778887777664
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00034 Score=59.02 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC-CHHHHHHHHhcCCCCceEEeecc-CCH-HHHHHHHhcCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN-ASSIIQVIGANCKNFSMLKVMFS-FDL-DFAMSLFMSIPE 200 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~c~~L~~L~l~~~-~~~-~~~~~l~~~~p~ 200 (307)
.+|+.|++.++...|-.+ +..+|+|+.|.++.++. ....+..++..||+|++|++++. +.+ ..+.. .+.+++
T Consensus 43 ~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN 117 (260)
T ss_pred cchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence 445555555444333222 23567888888887743 34556666666777777777655 221 11222 235667
Q ss_pred CCEEEecCCCCCH---HHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 201 LKVLSLRSSIVDK---NALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 201 L~~L~L~~~~it~---~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|..|++..|.++. .. ..+..-+|+|++||-..+....
T Consensus 118 L~~Ldl~n~~~~~l~dyr-e~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYR-EKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred hhhhhcccCCccccccHH-HHHHHHhhhhccccccccCCcc
Confidence 7777777776442 21 2344446777777765555443
No 39
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.001 Score=56.19 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhh
Q 037159 174 CKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQ 251 (307)
Q Consensus 174 c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~ 251 (307)
.|+|+.|.++.. ....++..+++.+|+|++|++++|.+.+-.-..=+...++|..|++..|...... .+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~---dy------ 134 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD---DY------ 134 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc---cH------
Confidence 378999999765 3344555667778999999999999875222223556789999999999876532 00
Q ss_pred hhHHHHHHhhcchhhhhcccc
Q 037159 252 LDNFILGKASRLREFFTCQVQ 272 (307)
Q Consensus 252 ~~~~~~~~~~~l~~l~~~~~~ 272 (307)
.+.+....++|+-+-.|...
T Consensus 135 -re~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 135 -REKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred -HHHHHHHhhhhccccccccC
Confidence 24466666666666666544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.62 E-value=0.0015 Score=56.49 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=66.0
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCC
Q 037159 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPE 200 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~ 200 (307)
+..|.++.|+++... ++.- .. +..+++|++|||+++.++.- .-.-....|++.|++++..- +.+..+. .+=+
T Consensus 304 KL~Pkir~L~lS~N~-i~~v--~n-La~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~La~N~i-E~LSGL~-KLYS 375 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNR-IRTV--QN-LAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLKLAQNKI-ETLSGLR-KLYS 375 (490)
T ss_pred hhccceeEEeccccc-eeee--hh-hhhcccceEeecccchhHhh--hhhHhhhcCEeeeehhhhhH-hhhhhhH-hhhh
Confidence 346888999888654 3321 12 44678899999988765221 12222345788888875411 1222222 3457
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
|..|++++|.|..-.-..-+.++|.|+.|.+.+.+.-
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8888888888654322233456888888888776643
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0019 Score=55.79 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred eccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159 105 FNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF 184 (307)
Q Consensus 105 l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~ 184 (307)
++++..=+...+..++..+..++.++|.+.....++.+..+..++|.|+.|+|+.+.+... +..+..-..+|++|-+++
T Consensus 52 ln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 52 LNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred ecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC
Confidence 3333333445577788888899999998765455678888889999999999988875322 122211235888888877
Q ss_pred c-CCHHHHHHHHhcCCCCCEEEecCC
Q 037159 185 S-FDLDFAMSLFMSIPELKVLSLRSS 209 (307)
Q Consensus 185 ~-~~~~~~~~l~~~~p~L~~L~L~~~ 209 (307)
. ..-.........+|.+++|.++.|
T Consensus 131 T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 131 TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCCChhhhhhhhhcchhhhhhhhccc
Confidence 6 222233334446666666666655
No 42
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.41 E-value=0.00036 Score=65.86 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 175 KNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 175 ~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
.||..+++++..-......+. .+++|+.|+|++|.||.-.+ -.....+|+.|+++....
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly-~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLY-KLRNLRRLNLSGNKITELNM--TEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hhhhhccccccCCCcchHHHh-hhhhhheeccCcCceeeeec--cHHHHhhhhhhccccchh
Confidence 455555555431111122222 56788888888887764222 223345677777766543
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.41 E-value=0.0001 Score=48.55 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=20.3
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.+++|++|++++|.++.-. ...+.++++|++|++++|.
T Consensus 23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 4566666666666543211 1234556666666666653
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.33 E-value=0.00016 Score=47.63 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=9.7
Q ss_pred hcCCCCCEEEecCCC
Q 037159 196 MSIPELKVLSLRSSI 210 (307)
Q Consensus 196 ~~~p~L~~L~L~~~~ 210 (307)
..+|+|++|++++|.
T Consensus 46 ~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 46 SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTSTTESEEEETSSS
T ss_pred cCCCCCCEEeCcCCc
Confidence 356677777776664
No 45
>PLN03150 hypothetical protein; Provisional
Probab=96.26 E-value=0.0055 Score=59.84 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=54.9
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEE
Q 037159 126 VKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVL 204 (307)
Q Consensus 126 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L 204 (307)
++.|+|+++. ++. .+...+..+++|+.|+|++|.+....-..+ ..+++|+.|+++++ +.......+ ..+++|++|
T Consensus 420 v~~L~L~~n~-L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESL-GQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-ccc-cCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEE
Confidence 4555665432 221 122334567777777777776543322233 34577777777655 221112222 267777777
Q ss_pred EecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 205 SLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 205 ~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
+|++|.++...-..+.....++..+++.++.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCc
Confidence 7777765532222222223455666665544
No 46
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.88 E-value=0.0016 Score=61.07 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHcCCCCcE
Q 037159 150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKN-ALNLILTLMGSLEA 228 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~-~l~~l~~~~~~L~~ 228 (307)
+++++|+|+++.+++-....+.. ..+|..|+|+...-..-.....+++|+|+.|+|..|.|... ++. .+++|.|+.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQN 249 (873)
T ss_pred CCceEEeeccccccccccccccc-cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhh
Confidence 46677777766665544444432 23666666655411111222334677788887777765432 322 356777777
Q ss_pred EeccCC
Q 037159 229 LNISHC 234 (307)
Q Consensus 229 L~l~~C 234 (307)
|.+...
T Consensus 250 lklqrN 255 (873)
T KOG4194|consen 250 LKLQRN 255 (873)
T ss_pred hhhhhc
Confidence 766443
No 47
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.86 E-value=0.007 Score=31.51 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=16.5
Q ss_pred CCCCCEEEecCCCCCHHHHHHHH
Q 037159 198 IPELKVLSLRSSIVDKNALNLIL 220 (307)
Q Consensus 198 ~p~L~~L~L~~~~it~~~l~~l~ 220 (307)
+++|++|+|++|.|+++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47888888888888888887765
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.73 E-value=0.011 Score=35.96 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=24.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA 163 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 163 (307)
++|+.|+++++. +++ +...+.++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCCCCC
Confidence 578888888664 553 4444678888888888888764
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.60 E-value=0.0044 Score=50.60 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=43.7
Q ss_pred hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH--HHHHc
Q 037159 147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALN--LILTL 222 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~--~l~~~ 222 (307)
..++.|..|.|..+.++.- -..++...|+|++|.+.+. ..-.++..++ .||+|++|.+-+|.++...=. .++-.
T Consensus 61 p~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEEe
Confidence 4555666666666654211 1122233466666666443 1112222333 567777777777766654311 23344
Q ss_pred CCCCcEEeccCC
Q 037159 223 MGSLEALNISHC 234 (307)
Q Consensus 223 ~~~L~~L~l~~C 234 (307)
.|+|+.||+.+-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 577777776543
No 50
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.41 E-value=0.013 Score=30.42 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=13.5
Q ss_pred CCCCCeEEecCCCCCHHHHHHHH
Q 037159 149 WKGLESLTVPFISNASSIIQVIG 171 (307)
Q Consensus 149 ~~~L~~L~L~~~~~~~~~l~~i~ 171 (307)
+++|++|+|++|.++++++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 45677777777777666666654
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.35 E-value=0.02 Score=57.90 Aligned_cols=109 Identities=20% Similarity=0.231 Sum_probs=68.7
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCC--HHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcC
Q 037159 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA--SSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSI 198 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~ 198 (307)
...|.|+.|+|++|.... .+...++.+-+|+.|+++++.+. +.++..+ +.|.+|++...........+...+
T Consensus 568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L----k~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNL----KKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHHHH----Hhhheeccccccccccccchhhhc
Confidence 357889999998765433 35556667778899999888763 3444433 578888886543222334444468
Q ss_pred CCCCEEEecCCCCC-HHHHHHHHHcCCCCcEEeccCCc
Q 037159 199 PELKVLSLRSSIVD-KNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 199 p~L~~L~L~~~~it-~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
++||+|.+.....+ +.....-+..+.+|+.+.+..+.
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999999887622 22333334556666666664443
No 52
>PLN03150 hypothetical protein; Provisional
Probab=94.80 E-value=0.026 Score=55.13 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=58.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEE
Q 037159 151 GLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEAL 229 (307)
Q Consensus 151 ~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L 229 (307)
.++.|+|+++.+....-..++ .+++|+.|+|+++ +.......+ ..+++|+.|+|++|.++.. +...+..+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS-IPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEE
Confidence 377889988876443333444 4699999999876 221222223 4799999999999987643 23345679999999
Q ss_pred eccCCcC
Q 037159 230 NISHCLL 236 (307)
Q Consensus 230 ~l~~C~~ 236 (307)
+|+++..
T Consensus 496 ~Ls~N~l 502 (623)
T PLN03150 496 NLNGNSL 502 (623)
T ss_pred ECcCCcc
Confidence 9998864
No 53
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.73 E-value=0.05 Score=29.51 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHcC
Q 037159 199 PELKVLSLRSSIVDKNALNLILTLM 223 (307)
Q Consensus 199 p~L~~L~L~~~~it~~~l~~l~~~~ 223 (307)
++|++|+|++|.++++|...+.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 6899999999999999998887654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.71 E-value=0.0035 Score=60.35 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=63.1
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHh-cCCCCceEEeeccCCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGA-NCKNFSMLKVMFSFDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~-~c~~L~~L~l~~~~~~~~~~~l~~~~p~ 200 (307)
..|.|++|+|+.. +++.-. .+..|+.|++|||++|.+.. +..++. .|. |..|++.+.. -..+..+ +++.+
T Consensus 185 ll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~-l~tL~gi-e~Lks 255 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNA-LTTLRGI-ENLKS 255 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH---HHHhcccccccccccchhcc--ccccchhhhh-heeeeecccH-HHhhhhH-Hhhhh
Confidence 3577899999854 355432 56688999999999987521 111221 233 8888886541 1123333 36778
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
|+.|++++|-+++..-...+..+..|..|.|.|.+
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 88888888876654433334444556666665543
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.69 E-value=0.012 Score=51.02 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=37.6
Q ss_pred hcCCCCCeEEecCCCC--CHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037159 147 QWWKGLESLTVPFISN--ASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVD 212 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~~--~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it 212 (307)
..+..|++|||+++.+ .++.++.+ |.++.|+++.. +.. +..+ ..+++|.+|+|++|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~----Pkir~L~lS~N~i~~--v~nL-a~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLA----PKLRRLILSQNRIRT--VQNL-AELPQLQLLDLSGNLLA 342 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhc----cceeEEeccccceee--ehhh-hhcccceEeecccchhH
Confidence 4567888888888865 34444433 78888888765 111 1112 26778888888887644
No 56
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.63 E-value=0.0025 Score=60.35 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=10.8
Q ss_pred cCCCCcEEeccCCcCCCc
Q 037159 222 LMGSLEALNISHCLLGQI 239 (307)
Q Consensus 222 ~~~~L~~L~l~~C~~i~~ 239 (307)
.|+.|+.|.++....||.
T Consensus 337 RC~kL~kL~L~~NrLiTL 354 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITL 354 (1255)
T ss_pred hhHHHHHhcccccceeec
Confidence 356666666666666663
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.012 Score=50.57 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEE
Q 037159 150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEAL 229 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L 229 (307)
.+.+.|++.+|.++|-. |.+..|.|+.|.|+-. .....+-...|.+|++|.|+.|.|.+-.-...+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvN--kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVN--KISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHH---HHHhcccceeEEeecc--ccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 35566666666665543 3344567777776532 111111123566777777777776655545556667777766
Q ss_pred eccC
Q 037159 230 NISH 233 (307)
Q Consensus 230 ~l~~ 233 (307)
-|..
T Consensus 94 WL~E 97 (388)
T KOG2123|consen 94 WLDE 97 (388)
T ss_pred hhcc
Confidence 6644
No 58
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.43 E-value=0.026 Score=56.03 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.9
Q ss_pred CCCccEEecCC
Q 037159 123 FPMVKHLALPP 133 (307)
Q Consensus 123 ~~~L~~L~L~~ 133 (307)
.++|++|+|++
T Consensus 241 p~~Lk~LdLs~ 251 (788)
T PRK15387 241 PPELRTLEVSG 251 (788)
T ss_pred CCCCcEEEecC
Confidence 35555555554
No 59
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=92.92 E-value=0.093 Score=52.27 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF 184 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~ 184 (307)
++|+.|.+..+. ++. +....++|++|++++|.++.- . ...++|+.|+++.
T Consensus 222 ~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls~ 271 (788)
T PRK15387 222 AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQLTSL--P---VLPPGLLELSIFS 271 (788)
T ss_pred cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCCccCcc--c---CcccccceeeccC
Confidence 478888888643 442 222468899999998876421 1 1124666666644
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.09 E-value=0.11 Score=46.99 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC
Q 037159 145 AIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG 224 (307)
Q Consensus 145 ~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~ 224 (307)
.+.++|+|+.|+|+++.++.-.-.++ +....+++|.+...--...-..+...+.+|+.|+|++|.||--+-.+ .+...
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~~ 346 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTLF 346 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-ccccc
Confidence 36678888888888887643332233 22356777777654222222334457788888888888765322211 23344
Q ss_pred CCcEEec
Q 037159 225 SLEALNI 231 (307)
Q Consensus 225 ~L~~L~l 231 (307)
.|..|++
T Consensus 347 ~l~~l~l 353 (498)
T KOG4237|consen 347 SLSTLNL 353 (498)
T ss_pred eeeeeeh
Confidence 5566665
No 61
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.02 E-value=0.27 Score=46.16 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=21.9
Q ss_pred HHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCC
Q 037159 117 VYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFI 160 (307)
Q Consensus 117 ~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 160 (307)
..+....|.+.+++|++..--.-+++..+.+..|+|..|+|+++
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 33444455555555554432233344555555555555555555
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.01 E-value=0.1 Score=50.71 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=23.5
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
-+|.|++|+|+.|.+++-. .+..|++|++|||++...
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhcccccccccccchh
Confidence 3567777777777766543 345577777777765443
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.79 E-value=0.17 Score=51.38 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=65.4
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPEL 201 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L 201 (307)
.||+|++|-+.+...--...-..++..+|.|..|||++|.-....-..|+. .-+|+.|++++..-..-+..+ ..+..|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~~LP~~l-~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGISHLPSGL-GNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCccccchHH-HHHHhh
Confidence 567788887765431011122234667889999999887643333333332 257888888766222222333 366788
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.+|++..+.--. .+..+...+++|++|.+..-.
T Consensus 621 ~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccc-cccchhhhcccccEEEeeccc
Confidence 888888765211 113445567899999886654
No 64
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=91.29 E-value=0.42 Score=44.97 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=66.7
Q ss_pred HHHHHhcCCCCCeEEecCCCC-CHHHHHHHHhcCCCCceEEeecc----CCHHHHHHHHhcCCCCCEEEecCCCCCH---
Q 037159 142 FRSAIQWWKGLESLTVPFISN-ASSIIQVIGANCKNFSMLKVMFS----FDLDFAMSLFMSIPELKVLSLRSSIVDK--- 213 (307)
Q Consensus 142 l~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~c~~L~~L~l~~~----~~~~~~~~l~~~~p~L~~L~L~~~~it~--- 213 (307)
+..+-.+.|.+..+.|+.|.+ .-+.+..+++..|+|+.|+|+.. ..+.++..+ ..+.|++|-+.||.+..
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 344556789999999999986 55778888898999999999875 223444444 46789999999998432
Q ss_pred ---HHHHHHHHcCCCCcEEec
Q 037159 214 ---NALNLILTLMGSLEALNI 231 (307)
Q Consensus 214 ---~~l~~l~~~~~~L~~L~l 231 (307)
+-+.+|.+.+|+|..||=
T Consensus 288 ~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hhHHHHHHHHHhcchheeecC
Confidence 345677888999998864
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.14 E-value=0.078 Score=50.68 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCC-CCcceee
Q 037159 11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRD-PVLWETL 55 (307)
Q Consensus 11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~-p~lw~~i 55 (307)
...||.|+...||.+|+.++++. +++||+.|+.++.+ +..|+..
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~-~~~v~~~w~~~~~~~~~~~~~~ 152 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLA-VRQVCRNWNKLLDDDKVWWRMC 152 (537)
T ss_pred hhcccchhcccccccCCHHHhhh-hhhhcchhhhhhhccchhhhhh
Confidence 45699999999999999999998 99999999999977 5555444
No 66
>PF13013 F-box-like_2: F-box-like domain
Probab=91.02 E-value=0.28 Score=36.18 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHhcCChHHHhhHHhhhhH
Q 037159 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCS 40 (307)
Q Consensus 10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk 40 (307)
...+||.||+..||.+-+..+... ++..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~-l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLA-LSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHH-HHHHHH
Confidence 377899999999999999999988 888887
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.01 E-value=0.1 Score=49.12 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=29.3
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCC----CccEEecCCCCCCCHHHHH---HHHhcCCCCCeEEecCCCC
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFP----MVKHLALPPCNEITVDGFR---SAIQWWKGLESLTVPFISN 162 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~----~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~~ 162 (307)
.+..++++++.. .++....+.+..+ .|+.|.+..|. ++..+.. ..+.+.+.|+.++++.|.+
T Consensus 116 ~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 116 TLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred cHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhcccchhHHHHHhccc
Confidence 455555555333 3555555444322 34555555543 4433322 2233355556666665554
No 68
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=90.82 E-value=0.033 Score=55.19 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=40.8
Q ss_pred cCCCCCeEEecCCCC---CHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC
Q 037159 148 WWKGLESLTVPFISN---ASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG 224 (307)
Q Consensus 148 ~~~~L~~L~L~~~~~---~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~ 224 (307)
..++|+.|+|+++++ ++..+. ..+.|+.|.++|.--..-...++ .++.|+.|...+|.+.. +.. +...|
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNkL~~Lp~tva-~~~~L~tL~ahsN~l~~--fPe-~~~l~ 452 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNKLTTLPDTVA-NLGRLHTLRAHSNQLLS--FPE-LAQLP 452 (1081)
T ss_pred cccceeeeeecccccccCCHHHHh----chHHhHHHhcccchhhhhhHHHH-hhhhhHHHhhcCCceee--chh-hhhcC
Confidence 555666666666543 222222 22445555555541111112222 45566666666655321 112 23468
Q ss_pred CCcEEeccCCcCCC
Q 037159 225 SLEALNISHCLLGQ 238 (307)
Q Consensus 225 ~L~~L~l~~C~~i~ 238 (307)
.|+.+||+ |.+++
T Consensus 453 qL~~lDlS-~N~L~ 465 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLS 465 (1081)
T ss_pred cceEEecc-cchhh
Confidence 99999998 55554
No 69
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.67 E-value=0.29 Score=44.43 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=32.6
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
.+.+|+.|+|.+|.+. .+..++.+|.+|++|++.+...-
T Consensus 503 nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence 6789999999998753 45678899999999999987654
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.65 E-value=0.4 Score=25.88 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=15.3
Q ss_pred CCCCeEEecCCCCCHHHHHHHHh
Q 037159 150 KGLESLTVPFISNASSIIQVIGA 172 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~ 172 (307)
++|++|+|++|.+++.+..++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45677777777776666666654
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.70 E-value=0.13 Score=39.75 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEE
Q 037159 125 MVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVL 204 (307)
Q Consensus 125 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L 204 (307)
.+..++|+.|.-+.-......+.+-..|+..+|+++.+ .+.-+.+....|.++.|++...--.+....++ .+|.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~A-am~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELA-AMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHh-hhHHhhhc
Confidence 46777888886443332333344556677778887754 22233445555778888886652112222343 78899999
Q ss_pred EecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 205 SLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 205 ~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+++.|.+...- ..++. +.+|-.|+..+-...
T Consensus 106 Nl~~N~l~~~p-~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLNAEP-RVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccccch-HHHHH-HHhHHHhcCCCCccc
Confidence 99998865321 12222 455666666554443
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.33 E-value=0.41 Score=39.42 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=53.1
Q ss_pred CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHH-HHHHHHcCCCC
Q 037159 149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNA-LNLILTLMGSL 226 (307)
Q Consensus 149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~-l~~l~~~~~~L 226 (307)
..+...+||+.+.+.. .....+.++|.+|.++.. +.. ....+...+|+|+.|.|.+|+|-.-+ +.. +..||.|
T Consensus 41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKL 115 (233)
T ss_pred ccccceecccccchhh---cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcch-hccCCcc
Confidence 3466777777764311 111234578899998765 221 11233446899999999999855433 444 4569999
Q ss_pred cEEeccCCcC
Q 037159 227 EALNISHCLL 236 (307)
Q Consensus 227 ~~L~l~~C~~ 236 (307)
++|.+-+...
T Consensus 116 ~~Ltll~Npv 125 (233)
T KOG1644|consen 116 EYLTLLGNPV 125 (233)
T ss_pred ceeeecCCch
Confidence 9999866543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.26 E-value=0.41 Score=22.53 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.9
Q ss_pred CCcEEeccCCc
Q 037159 225 SLEALNISHCL 235 (307)
Q Consensus 225 ~L~~L~l~~C~ 235 (307)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555554
No 74
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=88.23 E-value=0.31 Score=25.88 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.6
Q ss_pred CCCEEEecCCCCCHH-HHHHHHHcCC
Q 037159 200 ELKVLSLRSSIVDKN-ALNLILTLMG 224 (307)
Q Consensus 200 ~L~~L~L~~~~it~~-~l~~l~~~~~ 224 (307)
+||.|.|....++++ .+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 478889988885544 6888888887
No 75
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.89 E-value=0.4 Score=47.83 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=36.5
Q ss_pred CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCH--HHHHHHHHcCCCC
Q 037159 150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDK--NALNLILTLMGSL 226 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~--~~l~~l~~~~~~L 226 (307)
++|+.|++++|.++.- -..+ .++|+.|+++++ +. .-...+. +.|+.|++++|.++. ..+..+...+|++
T Consensus 346 ~sL~~L~Ls~N~L~~L-P~~l---p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 346 PELQVLDVSKNQITVL-PETL---PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQP 417 (754)
T ss_pred CcccEEECCCCCCCcC-Chhh---cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence 4666666666654210 0011 145666666544 11 0000111 245566666665431 2344444555666
Q ss_pred cEEeccCCc
Q 037159 227 EALNISHCL 235 (307)
Q Consensus 227 ~~L~l~~C~ 235 (307)
..|+|.+..
T Consensus 418 ~~L~L~~Np 426 (754)
T PRK15370 418 TRIIVEYNP 426 (754)
T ss_pred cEEEeeCCC
Confidence 666666544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.71 E-value=0.39 Score=45.32 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=15.0
Q ss_pred CEEEecCCCCCHHHHH---HHHHcCCCCcEEeccCCc
Q 037159 202 KVLSLRSSIVDKNALN---LILTLMGSLEALNISHCL 235 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~---~l~~~~~~L~~L~l~~C~ 235 (307)
+++++..|.+++.+.. ..+..|++++.|.+....
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 4555555554444322 233334445554444433
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.49 E-value=0.28 Score=37.89 Aligned_cols=84 Identities=7% Similarity=-0.065 Sum_probs=51.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELK 202 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~ 202 (307)
...|+..+|++.. +.+ -=..+..++|.++.|+++++.+.+-..+ ++ ..|.|+.|+++..--...+..++. +.+|-
T Consensus 52 ~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~l~~~p~vi~~-L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNPLNAEPRVIAP-LIKLD 126 (177)
T ss_pred CceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCccccchHHHHH-HHhHH
Confidence 4567777777542 211 0114556677888888888876544444 43 348888888876533344455553 66777
Q ss_pred EEEecCCCC
Q 037159 203 VLSLRSSIV 211 (307)
Q Consensus 203 ~L~L~~~~i 211 (307)
.|+.-++.+
T Consensus 127 ~Lds~~na~ 135 (177)
T KOG4579|consen 127 MLDSPENAR 135 (177)
T ss_pred HhcCCCCcc
Confidence 777777653
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.12 E-value=0.68 Score=42.61 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANCK 175 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c~ 175 (307)
+.+++.|.++.+ . +..+-..-++|++|.+.+|..++. +...+ .++|++|++++|. +. .+ -+
T Consensus 51 ~~~l~~L~Is~c-~-----L~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----sL---P~ 112 (426)
T PRK15386 51 ARASGRLYIKDC-D-----IESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----GL---PE 112 (426)
T ss_pred hcCCCEEEeCCC-C-----CcccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----cc---cc
Confidence 367788888765 2 222212234699999988876532 11112 3588899998873 21 11 24
Q ss_pred CCceEEeeccCCHHHHHHHHhcC-CCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 176 NFSMLKVMFSFDLDFAMSLFMSI-PELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~l~~~~-p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|+.|++.+.... .+. .+ ++|+.|.+.++. .....+.. .-.++|++|++++|..+.
T Consensus 113 sLe~L~L~~n~~~----~L~-~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 113 SVRSLEIKGSATD----SIK-NVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII 170 (426)
T ss_pred ccceEEeCCCCCc----ccc-cCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc
Confidence 6777877543111 111 22 356666664322 11111111 012567777777777654
No 79
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=85.76 E-value=0.013 Score=46.87 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=17.8
Q ss_pred cCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159 197 SIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 197 ~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
.+.+|+-|.++.+. ++-. .-+..+.+|++|+|.+.
T Consensus 148 ~lt~lqil~lrdndll~lp---keig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLLSLP---KEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhcceeEEeeccCchhhCc---HHHHHHHHHHHHhcccc
Confidence 45677777777766 3311 11222344555555543
No 80
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=84.38 E-value=0.21 Score=40.01 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=54.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCE
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKV 203 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~ 203 (307)
.+++.|.|+... ++. +..-+..+.+|+.|+++++.+.+ +..-....|+|+.|+++-..-......+ .++|-|+.
T Consensus 33 s~ITrLtLSHNK-l~~--vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTV--VPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEV 106 (264)
T ss_pred hhhhhhhcccCc-eee--cCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCcccc-CCCchhhh
Confidence 456677776432 221 11112345688888888876522 1111233477888877522111111122 36788888
Q ss_pred EEecCCCCCHHHHHHHHHcCCCCcEEeccC
Q 037159 204 LSLRSSIVDKNALNLILTLMGSLEALNISH 233 (307)
Q Consensus 204 L~L~~~~it~~~l~~l~~~~~~L~~L~l~~ 233 (307)
|+|.++.++...+..=.-.+..|+.|-+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcC
Confidence 888888777655432222233445555544
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.31 E-value=0.28 Score=45.53 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=58.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
+.+|+.|++.... +. .+......+++|+.|+|+++.+++ ..+.. ++.|+.|++.+. +.+. .. ...+++
T Consensus 94 ~~~l~~l~l~~n~-i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~--~~-~~~l~~ 163 (414)
T KOG0531|consen 94 LKSLEALDLYDNK-IE--KIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDI--SG-LESLKS 163 (414)
T ss_pred ccceeeeeccccc-hh--hcccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhc--cC-Cccchh
Confidence 4566666666432 22 222224567788888888776632 22222 244777777654 1111 11 113677
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
|+.+++.++.+++-.-.. +..+.+|+.+.+.+......
T Consensus 164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 777777777765433311 45667777777777666553
No 82
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.27 E-value=1.3 Score=40.33 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=52.6
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC--CH------HHHHHHH--------------hcCCCCc
Q 037159 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN--AS------SIIQVIG--------------ANCKNFS 178 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~------~~l~~i~--------------~~c~~L~ 178 (307)
...++|..|+|++.. ..+ +..-...+..|+.|+++.+.+ -+ ..++.+. .+..+|+
T Consensus 432 ~~l~kLt~L~L~NN~-Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNL-LND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred Hhhhcceeeecccch-hhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 356888999988643 211 222233455689999988764 11 1222221 2345677
Q ss_pred eEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037159 179 MLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVD 212 (307)
Q Consensus 179 ~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it 212 (307)
.|++....- ..+..+..+|.+|++|.+.||.+.
T Consensus 509 tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 777755411 223334458999999999999854
No 83
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=84.17 E-value=0.81 Score=33.01 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHHhcCChHHHhh
Q 037159 9 RNWQNMHYDILVKIFMALRVTDLIF 33 (307)
Q Consensus 9 ~~w~~LP~eiL~~If~~L~~~d~~~ 33 (307)
..|..||.|+-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5699999999999999999999864
No 84
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=81.41 E-value=0.87 Score=40.33 Aligned_cols=51 Identities=18% Similarity=0.417 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHhcCChHHH-------hhHHhhhhHHHHHhcC----CCCcceeeecCc
Q 037159 9 RNWQNMHYDILVKIFMALRVTDL-------IFAVSKVCSSWRAASR----DPVLWETLDLNV 59 (307)
Q Consensus 9 ~~w~~LP~eiL~~If~~L~~~d~-------~~~~s~VCk~Wr~~~~----~p~lw~~i~l~~ 59 (307)
..|++||+|.|..|.......|. +.+++-||+.|+..+. .|..|.++++..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~ 104 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPA 104 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhH
Confidence 46999999999999998854433 3349999999999774 377888877654
No 85
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=80.65 E-value=0.77 Score=42.08 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=18.6
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
.+++|+.|+++++.+++-.- +....+|+.|++++-...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 44455555555555443221 334455555555554443
No 86
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=79.29 E-value=3 Score=41.81 Aligned_cols=88 Identities=9% Similarity=0.062 Sum_probs=55.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CC--HHHHHHHHhcCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FD--LDFAMSLFMSIP 199 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~--~~~~~~l~~~~p 199 (307)
+++|+.|+|+++. ++. +...+ .+.|+.|+|++|.++.- ...+. +.|+.|+++++ +. ...+......+|
T Consensus 345 ~~sL~~L~Ls~N~-L~~--LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 345 PPELQVLDVSKNQ-ITV--LPETL--PPTITTLDVSRNALTNL-PENLP---AALQIMQASRNNLVRLPESLPHFRGEGP 415 (754)
T ss_pred cCcccEEECCCCC-CCc--CChhh--cCCcCEEECCCCcCCCC-CHhHH---HHHHHHhhccCCcccCchhHHHHhhcCC
Confidence 3688889888764 431 21111 36899999999986321 11121 25777777654 11 223334444679
Q ss_pred CCCEEEecCCCCCHHHHHHH
Q 037159 200 ELKVLSLRSSIVDKNALNLI 219 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l 219 (307)
++..|+|.+|.++...+..+
T Consensus 416 ~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 416 QPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CccEEEeeCCCccHHHHHHH
Confidence 99999999999987766543
No 87
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=77.40 E-value=0.65 Score=43.07 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=68.8
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+..++.+.+... .+.. +..-+..+.+|+.|++..+.+. .+..+...+++|+.|+++.. +.+- ..+ ..++.
T Consensus 70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~~l-~~l~~ 141 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAK--ILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--EGL-STLTL 141 (414)
T ss_pred HhHhHHhhccchh-hhhh--hhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--cch-hhccc
Confidence 3555666654422 1221 2223457789999999887652 12221346799999999876 3221 122 25677
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP 240 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~ 240 (307)
|+.|++.+|.|++..- +..++.|+.++++++......
T Consensus 142 L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIE 178 (414)
T ss_pred hhhheeccCcchhccC---CccchhhhcccCCcchhhhhh
Confidence 9999999999775321 233789999999998887654
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=77.36 E-value=1.4 Score=37.78 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhcCC-hHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159 2 TSQGSNSRNWQNMHYDILVKIFMALR-VTDLIFAVSKVCSSWRAASRDPVLWETLD 56 (307)
Q Consensus 2 ~~~~~~~~~w~~LP~eiL~~If~~L~-~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~ 56 (307)
++.+..+..+.+||.|++.+|+.+++ ..|+.. +++|=-.-..++.+..+|+++-
T Consensus 193 ~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s-~aqa~etl~~l~~e~~iWkkLc 247 (332)
T KOG3926|consen 193 TEPDPAGLTLHDLPLECVLNILLRLSDHRDLES-LAQAWETLAKLSEERRIWKKLC 247 (332)
T ss_pred cCCCcCCCCcccchHHHHHHHHHHccCcchHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 34444566789999999999999985 456665 8888777777776777887653
No 89
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=76.81 E-value=1.5 Score=40.22 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=38.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcC-CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWW-KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~ 202 (307)
+.++.|.+.+.. +++ +....... ++|+.|+++.+.+.... .-...+++|+.|.++.+--.+... .....++|+
T Consensus 116 ~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLN 189 (394)
T ss_pred cceeEEecCCcc-ccc--Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhh-hhhhhhhhh
Confidence 456666665432 222 22223333 26667776666542211 122345667777665541111111 111456666
Q ss_pred EEEecCCCCC
Q 037159 203 VLSLRSSIVD 212 (307)
Q Consensus 203 ~L~L~~~~it 212 (307)
.|+++++.++
T Consensus 190 ~L~ls~N~i~ 199 (394)
T COG4886 190 NLDLSGNKIS 199 (394)
T ss_pred heeccCCccc
Confidence 6666666644
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.06 E-value=1.6 Score=21.85 Aligned_cols=10 Identities=40% Similarity=0.478 Sum_probs=7.1
Q ss_pred CCcEEeccCC
Q 037159 225 SLEALNISHC 234 (307)
Q Consensus 225 ~L~~L~l~~C 234 (307)
+|++|||++|
T Consensus 1 ~L~~Ldls~n 10 (22)
T PF00560_consen 1 NLEYLDLSGN 10 (22)
T ss_dssp TESEEEETSS
T ss_pred CccEEECCCC
Confidence 4677777777
No 91
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=71.09 E-value=2 Score=39.14 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=53.7
Q ss_pred HhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcC
Q 037159 120 ATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSI 198 (307)
Q Consensus 120 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~ 198 (307)
.+..|+|++|+|++.. ++.-. ...+.....|++|.|..+.+.. +-....+...+|+.|++.+. ++-.. ....+.+
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~-~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~-~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIE-DGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVA-PGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCc-cchhh-hhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEe-ccccccc
Confidence 4567999999999764 54321 1233456689999998887522 22223345578999999765 22111 1112456
Q ss_pred CCCCEEEecCCC
Q 037159 199 PELKVLSLRSSI 210 (307)
Q Consensus 199 p~L~~L~L~~~~ 210 (307)
..|..|.|-+|.
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 788888887765
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=68.69 E-value=4.1 Score=21.14 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=6.8
Q ss_pred CCCCEEEecCCC
Q 037159 199 PELKVLSLRSSI 210 (307)
Q Consensus 199 p~L~~L~L~~~~ 210 (307)
++|++|+|.+|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 455556665554
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=68.69 E-value=4.1 Score=21.14 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=6.8
Q ss_pred CCCCEEEecCCC
Q 037159 199 PELKVLSLRSSI 210 (307)
Q Consensus 199 p~L~~L~L~~~~ 210 (307)
++|++|+|.+|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 455556665554
No 94
>PRK15386 type III secretion protein GogB; Provisional
Probab=65.50 E-value=9.7 Score=35.26 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=54.9
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPEL 201 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L 201 (307)
.|++++.|++++|. ++. +. .-.++|++|.+++|..-......+ .++|+.|++++|..- . .--++|
T Consensus 50 ~~~~l~~L~Is~c~-L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L---~---sLP~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCD-IES--LP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEI---S---GLPESV 114 (426)
T ss_pred HhcCCCEEEeCCCC-Ccc--cC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccc---c---cccccc
Confidence 47999999999883 432 11 122369999999875311111111 258999999876221 1 123578
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISH 233 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~ 233 (307)
+.|.+.++.... +-.--++|+.|.+.+
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~ 141 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINS 141 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccc
Confidence 999987665432 112225678888754
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=65.44 E-value=17 Score=32.47 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcC---CCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCC
Q 037159 140 DGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANC---KNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIV 211 (307)
Q Consensus 140 ~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c---~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~i 211 (307)
..+..+-..-|.|++++|.... ++...+..+.... ...+.+.+... .++..+.++ ...++.|++|.+.++.|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 3444454556788888887664 5666666655433 33333444332 334444333 45688999999999999
Q ss_pred CHHHHHHHHHcCCC
Q 037159 212 DKNALNLILTLMGS 225 (307)
Q Consensus 212 t~~~l~~l~~~~~~ 225 (307)
|..|+.+++..++.
T Consensus 268 tg~gi~a~~~al~~ 281 (353)
T KOG3735|consen 268 TGLGIMALLRALQS 281 (353)
T ss_pred ccHHHHHHHHHHhc
Confidence 99999988876643
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.80 E-value=11 Score=19.97 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=9.9
Q ss_pred CCCCEEEecCCCCC
Q 037159 199 PELKVLSLRSSIVD 212 (307)
Q Consensus 199 p~L~~L~L~~~~it 212 (307)
.+|+.|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777664
No 97
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=33.49 E-value=1.4e+02 Score=19.45 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHH-----cCCCCcEEec
Q 037159 175 KNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILT-----LMGSLEALNI 231 (307)
Q Consensus 175 ~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~-----~~~~L~~L~l 231 (307)
.++..|.+... ++-+.+.. -+=+.+.+..+.+|.+.+..++. ..|+|++|.+
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll~-----~nc~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLLN-----MNCKKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCCEEEEccCCcccHHHHHh-----cCCCEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 45666666532 34333332 24566777777788777776654 3577777765
No 98
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=32.87 E-value=18 Score=22.07 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeec
Q 037159 16 YDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL 57 (307)
Q Consensus 16 ~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l 57 (307)
.++-..||.+|..-.-+. +.++||..++.. -|.++++|.+
T Consensus 6 ~~v~~lI~~~l~~i~P~t-~l~lSr~~yk~i-iP~iYr~v~~ 45 (46)
T PF12586_consen 6 GPVHDLILDELSRIRPLT-YLRLSRYHYKRI-IPIIYRHVTI 45 (46)
T ss_pred HhHHHHHHHHHHhcCChh-heeeeHHHhhhh-hhhhhheeec
Confidence 356667777665555566 788888888664 3888888764
No 99
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=29.75 E-value=43 Score=17.74 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=11.4
Q ss_pred HHHHcCCCCcEEeccC
Q 037159 218 LILTLMGSLEALNISH 233 (307)
Q Consensus 218 ~l~~~~~~L~~L~l~~ 233 (307)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3566788888888753
No 100
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=27.32 E-value=8.4 Score=28.62 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=40.5
Q ss_pred hCCCccEEecCCCC-CCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCN-EITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~ 200 (307)
.|.+|+.+.+.... .+.. ..+..|++|+++.+... +..-. ......|++|+.+.+......-+.. ....+++
T Consensus 10 ~~~~l~~i~~~~~~~~I~~----~~F~~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~~~~~i~~~-~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGE----NAFSNCTSLKSINFPNN-LTSIG-DNAFSNCKSLESITFPNNLKSIGDN-AFSNCTN 82 (129)
T ss_dssp T-TT--EEEETST--EE-T----TTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETSTT-EE-TT-TTTT-TT
T ss_pred CCCCCCEEEECCCeeEeCh----hhccccccccccccccc-ccccc-eeeeecccccccccccccccccccc-ccccccc
Confidence 46677887776321 1111 12456777888877653 11101 1122456677777775432111111 1235677
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISH 233 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~ 233 (307)
|+.+.+..+ ++.-+- ....++ +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHT-TTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEch-hhhcCC-CceEEEECC
Confidence 777777543 221111 123445 677776653
No 101
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=23.04 E-value=2.5e+02 Score=25.26 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=13.6
Q ss_pred HHHHHHHhhCCCccEEecCCCCCCCHHH
Q 037159 114 EHLVYAATRFPMVKHLALPPCNEITVDG 141 (307)
Q Consensus 114 ~~l~~i~~~~~~L~~L~L~~~~~~~~~~ 141 (307)
+.+..+...-|+++..+|.+...++...
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~ 215 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIET 215 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHH
Confidence 4444444445555555555444444433
No 102
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=22.01 E-value=47 Score=24.75 Aligned_cols=10 Identities=10% Similarity=-0.131 Sum_probs=4.2
Q ss_pred HHHHhcCCCC
Q 037159 143 RSAIQWWKGL 152 (307)
Q Consensus 143 ~~~~~~~~~L 152 (307)
...+..|+.|
T Consensus 29 ~~mF~~~~~l 38 (120)
T PF03382_consen 29 SYMFYGCTSL 38 (120)
T ss_pred HHHhhcchhc
Confidence 3344444444
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=21.71 E-value=53 Score=17.38 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=7.2
Q ss_pred CCCCEEEecCCCC
Q 037159 199 PELKVLSLRSSIV 211 (307)
Q Consensus 199 p~L~~L~L~~~~i 211 (307)
++|+.|.+++|.+
T Consensus 2 ~~L~~L~vs~N~L 14 (26)
T smart00364 2 PSLKELNVSNNQL 14 (26)
T ss_pred cccceeecCCCcc
Confidence 3456666666553
Done!