Query 037159
Match_columns 307
No_of_seqs 318 out of 2189
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 15:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 8.4E-26 2.9E-30 201.3 20.2 225 7-237 5-260 (336)
2 2p1m_B Transport inhibitor res 99.9 3.7E-22 1.3E-26 190.7 12.3 221 9-236 4-247 (594)
3 3ogk_B Coronatine-insensitive 99.8 1.6E-19 5.6E-24 172.3 14.6 197 11-236 13-232 (592)
4 2p1m_B Transport inhibitor res 99.5 2.4E-13 8.3E-18 129.5 19.3 140 96-236 336-493 (594)
5 3ogk_B Coronatine-insensitive 99.5 2.7E-13 9.3E-18 129.2 18.4 141 96-238 340-501 (592)
6 2ast_B S-phase kinase-associat 99.5 1.2E-13 4E-18 122.5 13.9 136 97-234 141-282 (336)
7 1fs1_A SKP2 F-BOX, cyclin A/CD 99.5 2.1E-14 7.2E-19 91.9 3.9 49 7-56 5-53 (53)
8 3e4g_A ATP synthase subunit S, 99.4 3.6E-13 1.2E-17 107.6 6.9 85 152-238 63-153 (176)
9 3e4g_A ATP synthase subunit S, 99.4 9.8E-13 3.4E-17 105.1 7.0 101 124-227 61-170 (176)
10 3un9_A NLR family member X1; l 99.3 8.5E-11 2.9E-15 105.9 15.2 144 91-236 94-251 (372)
11 1io0_A Tropomodulin; LRR prote 99.3 3E-10 1E-14 92.1 16.4 124 113-236 25-163 (185)
12 3un9_A NLR family member X1; l 99.2 1.3E-10 4.5E-15 104.7 14.4 138 97-236 71-223 (372)
13 1z7x_W Ribonuclease inhibitor; 99.2 5.5E-10 1.9E-14 103.0 15.7 137 97-235 27-181 (461)
14 2ca6_A RAN GTPase-activating p 99.2 8.7E-10 3E-14 99.6 16.6 137 98-236 159-315 (386)
15 2ca6_A RAN GTPase-activating p 99.2 6.9E-10 2.3E-14 100.2 15.9 141 96-238 120-288 (386)
16 1z7x_W Ribonuclease inhibitor; 99.1 1E-09 3.5E-14 101.2 15.1 111 123-234 255-380 (461)
17 2ra8_A Uncharacterized protein 99.1 5.9E-10 2E-14 99.8 11.3 136 96-238 170-320 (362)
18 1io0_A Tropomodulin; LRR prote 98.9 3.4E-08 1.2E-12 79.9 15.2 129 85-215 24-167 (185)
19 3goz_A Leucine-rich repeat-con 98.9 1.6E-08 5.6E-13 90.4 13.2 139 97-236 79-237 (362)
20 2je0_A Acidic leucine-rich nuc 98.9 4.9E-10 1.7E-14 87.2 2.7 129 98-232 17-148 (149)
21 2je0_A Acidic leucine-rich nuc 98.9 5.8E-10 2E-14 86.8 1.8 111 123-238 16-127 (149)
22 3goz_A Leucine-rich repeat-con 98.8 1.4E-07 4.7E-12 84.4 17.3 139 99-238 52-210 (362)
23 2ell_A Acidic leucine-rich nuc 98.8 2.7E-10 9.4E-15 90.5 -2.1 138 96-239 22-162 (168)
24 2ra8_A Uncharacterized protein 98.7 9E-08 3.1E-12 85.6 11.2 136 97-235 192-341 (362)
25 2ell_A Acidic leucine-rich nuc 98.7 1.3E-09 4.4E-14 86.6 -1.2 112 122-238 22-134 (168)
26 3l2o_B F-box only protein 4; s 98.7 1.9E-09 6.5E-14 91.8 -0.3 49 10-59 4-52 (312)
27 4ezg_A Putative uncharacterize 98.6 1.2E-08 4.2E-13 83.2 3.5 127 99-238 45-173 (197)
28 1pgv_A TMD-1, tropomodulin TMD 98.6 1.2E-06 4.1E-11 71.1 14.4 122 113-234 30-167 (197)
29 4fmz_A Internalin; leucine ric 98.6 9.7E-08 3.3E-12 84.6 7.3 128 96-238 197-325 (347)
30 4ezg_A Putative uncharacterize 98.5 1.7E-08 5.8E-13 82.3 1.4 127 97-236 65-193 (197)
31 2e31_A FBS1, F-box only protei 98.5 3.8E-08 1.3E-12 84.7 2.9 47 9-56 49-96 (297)
32 4fmz_A Internalin; leucine ric 98.4 5.2E-07 1.8E-11 79.8 8.1 126 96-238 175-301 (347)
33 1a9n_A U2A', U2A'; complex (nu 98.4 5E-08 1.7E-12 78.0 0.6 131 97-236 18-152 (176)
34 1h6t_A Internalin B; cell adhe 98.3 6.3E-07 2.1E-11 77.7 6.2 122 98-236 68-190 (291)
35 1a9n_A U2A', U2A'; complex (nu 98.3 6.9E-08 2.3E-12 77.2 0.1 110 122-238 17-127 (176)
36 1pgv_A TMD-1, tropomodulin TMD 98.3 8.9E-06 3.1E-10 65.9 12.2 98 139-236 30-138 (197)
37 4fcg_A Uncharacterized protein 98.3 3E-08 1E-12 87.6 -3.5 109 123-238 126-243 (328)
38 1h6u_A Internalin H; cell adhe 98.3 8.4E-07 2.9E-11 77.5 5.8 104 122-238 105-209 (308)
39 1h6u_A Internalin H; cell adhe 98.3 9.5E-07 3.2E-11 77.1 5.9 103 121-236 82-185 (308)
40 1m9s_A Internalin B; cell inva 98.2 9.9E-07 3.4E-11 84.2 5.6 36 197-235 173-208 (605)
41 1h6t_A Internalin B; cell adhe 98.2 1.6E-06 5.4E-11 75.1 6.0 123 99-238 47-170 (291)
42 3rfs_A Internalin B, repeat mo 98.2 7.2E-08 2.5E-12 82.7 -2.6 15 148-162 107-121 (272)
43 1m9s_A Internalin B; cell inva 98.2 9.6E-07 3.3E-11 84.3 4.6 125 97-238 64-189 (605)
44 1ds9_A Outer arm dynein; leuci 98.2 8.6E-08 2.9E-12 78.2 -2.7 106 122-236 46-152 (198)
45 4fcg_A Uncharacterized protein 98.2 8E-08 2.7E-12 84.8 -3.1 134 95-238 78-220 (328)
46 1wwl_A Monocyte differentiatio 98.2 5E-07 1.7E-11 79.0 2.0 138 98-237 121-266 (312)
47 4glp_A Monocyte differentiatio 98.2 4.7E-07 1.6E-11 79.1 1.7 138 98-238 91-238 (310)
48 2z7x_B TOLL-like receptor 1, v 98.2 8.7E-07 3E-11 82.9 3.5 133 98-238 324-458 (520)
49 4glp_A Monocyte differentiatio 98.1 1E-07 3.5E-12 83.3 -2.9 137 98-238 117-265 (310)
50 3v7d_B Cell division control p 98.1 4.6E-07 1.6E-11 82.9 1.3 47 11-58 15-62 (464)
51 1xeu_A Internalin C; cellular 98.1 1.3E-06 4.3E-11 74.6 3.7 122 99-238 42-164 (263)
52 2z66_A Variable lymphocyte rec 98.1 1E-08 3.4E-13 89.5 -9.8 90 147-238 123-213 (306)
53 3rfs_A Internalin B, repeat mo 98.1 3.3E-07 1.1E-11 78.5 -0.0 128 98-236 41-169 (272)
54 1o6v_A Internalin A; bacterial 98.1 2.7E-06 9.4E-11 78.5 5.9 58 97-162 220-277 (466)
55 2ovr_B FBW7, F-BOX/WD repeat p 98.1 8.2E-07 2.8E-11 81.0 2.2 47 10-57 18-64 (445)
56 1wwl_A Monocyte differentiatio 98.1 5.2E-06 1.8E-10 72.4 7.0 139 97-238 94-242 (312)
57 1ds9_A Outer arm dynein; leuci 98.1 2.6E-07 9E-12 75.2 -1.3 123 97-230 47-180 (198)
58 1p22_A F-BOX/WD-repeat protein 98.1 7.1E-07 2.4E-11 81.3 0.9 45 11-56 11-59 (435)
59 1o6v_A Internalin A; bacterial 98.0 3.4E-06 1.2E-10 77.8 5.2 125 97-238 242-367 (466)
60 2o6s_A Variable lymphocyte rec 98.0 1.1E-07 3.8E-12 78.0 -4.4 132 99-237 29-161 (208)
61 2z7x_B TOLL-like receptor 1, v 98.0 8.7E-07 3E-11 82.9 0.7 134 97-238 347-482 (520)
62 3v47_A TOLL-like receptor 5B a 98.0 5.1E-07 1.7E-11 82.9 -1.4 114 122-237 52-167 (455)
63 1xeu_A Internalin C; cellular 98.0 1.4E-06 4.9E-11 74.2 1.3 124 97-238 62-186 (263)
64 2z63_A TOLL-like receptor 4, v 98.0 3.5E-08 1.2E-12 93.2 -9.8 37 197-234 468-504 (570)
65 1ozn_A Reticulon 4 receptor; N 98.0 3.1E-07 1.1E-11 79.1 -3.3 107 123-234 104-211 (285)
66 1dce_A Protein (RAB geranylger 97.9 1.5E-06 5.1E-11 82.4 0.8 106 124-238 441-547 (567)
67 3m19_A Variable lymphocyte rec 97.9 3.2E-07 1.1E-11 77.6 -3.5 132 98-236 59-191 (251)
68 3v47_A TOLL-like receptor 5B a 97.9 4.4E-07 1.5E-11 83.3 -3.0 114 123-239 29-144 (455)
69 2z62_A TOLL-like receptor 4, v 97.9 3.8E-07 1.3E-11 78.2 -4.0 16 197-212 147-162 (276)
70 3vq2_A TLR4, TOLL-like recepto 97.9 9.5E-08 3.2E-12 91.1 -8.9 40 197-237 471-510 (606)
71 2z81_A CD282 antigen, TOLL-lik 97.9 9.2E-06 3.1E-10 76.3 4.7 40 123-162 360-399 (549)
72 3t6q_A CD180 antigen; protein- 97.9 2.2E-07 7.7E-12 88.5 -6.6 16 197-212 447-462 (606)
73 3o6n_A APL1; leucine-rich repe 97.8 1.5E-06 5.2E-11 78.2 -1.1 107 123-238 225-332 (390)
74 3e6j_A Variable lymphocyte rec 97.8 1.1E-06 3.9E-11 73.2 -1.8 132 98-237 40-172 (229)
75 1p9a_G Platelet glycoprotein I 97.8 4.2E-07 1.4E-11 78.8 -4.8 131 98-238 55-186 (290)
76 3o53_A Protein LRIM1, AGAP0063 97.8 5.6E-07 1.9E-11 78.9 -4.1 107 123-237 143-250 (317)
77 3m19_A Variable lymphocyte rec 97.8 1.3E-06 4.5E-11 73.7 -1.7 133 99-238 36-169 (251)
78 2o6s_A Variable lymphocyte rec 97.8 9E-07 3.1E-11 72.5 -2.8 111 123-238 27-138 (208)
79 1ozn_A Reticulon 4 receptor; N 97.8 2E-06 7E-11 73.9 -0.9 135 97-238 104-239 (285)
80 2z81_A CD282 antigen, TOLL-lik 97.8 3.1E-05 1.1E-09 72.7 7.0 86 148-235 332-421 (549)
81 2z66_A Variable lymphocyte rec 97.8 2.9E-07 9.7E-12 80.1 -6.6 113 122-238 124-237 (306)
82 2o6q_A Variable lymphocyte rec 97.8 1.1E-06 3.8E-11 75.0 -2.8 109 122-235 83-192 (270)
83 4ecn_A Leucine-rich repeat pro 97.8 4E-06 1.4E-10 83.2 0.4 131 97-236 490-631 (876)
84 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 2.5E-06 8.4E-11 80.7 -1.1 110 122-238 375-487 (562)
85 2o6r_A Variable lymphocyte rec 97.8 1.1E-06 3.7E-11 70.1 -3.0 110 124-238 28-138 (177)
86 3zyi_A Leucine-rich repeat-con 97.8 8.1E-07 2.8E-11 81.8 -4.4 132 97-236 146-278 (452)
87 1xku_A Decorin; proteoglycan, 97.8 2.4E-06 8.1E-11 75.1 -1.3 131 98-237 121-253 (330)
88 1dce_A Protein (RAB geranylger 97.7 5.9E-06 2E-10 78.3 1.1 81 150-238 441-522 (567)
89 2wfh_A SLIT homolog 2 protein 97.7 1.8E-06 6E-11 70.1 -2.3 109 124-238 31-140 (193)
90 1ogq_A PGIP-2, polygalacturona 97.7 1.4E-07 4.9E-12 82.6 -9.5 14 148-161 123-136 (313)
91 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 1.4E-06 4.8E-11 82.4 -3.4 132 98-238 377-511 (562)
92 3oja_B Anopheles plasmodium-re 97.7 3.2E-06 1.1E-10 80.7 -1.2 106 124-238 232-338 (597)
93 2z80_A TOLL-like receptor 2, v 97.7 3.7E-06 1.3E-10 74.6 -0.8 58 98-160 100-159 (353)
94 3oja_A Leucine-rich immune mol 97.7 1.3E-06 4.4E-11 81.3 -4.0 37 148-184 142-178 (487)
95 4g8a_A TOLL-like receptor 4; l 97.7 1.6E-06 5.4E-11 82.7 -3.6 130 99-236 53-185 (635)
96 3rgz_A Protein brassinosteroid 97.7 1.3E-06 4.3E-11 85.9 -4.5 61 97-162 199-259 (768)
97 3vq2_A TLR4, TOLL-like recepto 97.7 1.3E-06 4.4E-11 83.2 -4.4 38 197-234 126-163 (606)
98 2o6q_A Variable lymphocyte rec 97.7 2.2E-06 7.4E-11 73.2 -2.6 134 99-239 38-172 (270)
99 3bz5_A Internalin-J, INLJ; leu 97.7 1.9E-05 6.3E-10 72.9 3.4 117 98-235 42-159 (457)
100 3rgz_A Protein brassinosteroid 97.7 1.1E-06 3.9E-11 86.3 -5.2 38 146-184 219-256 (768)
101 2z80_A TOLL-like receptor 2, v 97.7 2.1E-06 7E-11 76.3 -3.2 135 98-238 52-188 (353)
102 2v9t_B SLIT homolog 2 protein 97.7 1.9E-06 6.6E-11 71.4 -3.3 133 99-238 33-166 (220)
103 3zyj_A Leucine-rich repeat-con 97.6 1.2E-06 4.2E-11 80.2 -4.9 132 98-237 136-268 (440)
104 4eco_A Uncharacterized protein 97.6 1.4E-05 4.8E-10 76.8 2.1 112 122-237 204-343 (636)
105 2z63_A TOLL-like receptor 4, v 97.6 1.8E-06 6.1E-11 81.5 -4.2 16 197-212 147-162 (570)
106 3rw6_A Nuclear RNA export fact 97.6 5.5E-05 1.9E-09 64.4 5.4 83 147-231 167-258 (267)
107 3e6j_A Variable lymphocyte rec 97.6 3.9E-06 1.3E-10 69.9 -1.8 110 123-238 39-149 (229)
108 1xku_A Decorin; proteoglycan, 97.6 5.8E-06 2E-10 72.6 -1.0 128 98-237 100-229 (330)
109 3o6n_A APL1; leucine-rich repe 97.6 5.5E-06 1.9E-10 74.5 -1.2 80 150-235 226-306 (390)
110 3o53_A Protein LRIM1, AGAP0063 97.6 7.1E-07 2.4E-11 78.2 -6.9 133 98-239 144-277 (317)
111 3t6q_A CD180 antigen; protein- 97.6 1.2E-06 4.2E-11 83.4 -5.9 38 197-235 423-460 (606)
112 2v70_A SLIT-2, SLIT homolog 2 97.6 2.8E-06 9.5E-11 70.4 -3.0 113 121-238 54-167 (220)
113 1w8a_A SLIT protein; signaling 97.6 1.3E-06 4.4E-11 70.8 -5.2 110 124-237 29-139 (192)
114 4ecn_A Leucine-rich repeat pro 97.6 1.9E-05 6.6E-10 78.3 1.9 110 122-237 489-608 (876)
115 4eco_A Uncharacterized protein 97.6 2.9E-06 9.8E-11 81.6 -4.0 85 97-185 248-340 (636)
116 1ziw_A TOLL-like receptor 3; i 97.5 6.8E-06 2.3E-10 79.3 -1.7 37 197-234 558-594 (680)
117 2v70_A SLIT-2, SLIT homolog 2 97.5 2.5E-06 8.7E-11 70.6 -4.2 113 123-239 31-144 (220)
118 3bz5_A Internalin-J, INLJ; leu 97.5 2.9E-05 9.9E-10 71.6 2.2 77 148-236 168-245 (457)
119 1p9a_G Platelet glycoprotein I 97.5 4E-06 1.4E-10 72.5 -3.4 131 99-239 32-163 (290)
120 3oja_A Leucine-rich immune mol 97.5 6.2E-06 2.1E-10 76.7 -2.6 130 98-237 120-250 (487)
121 4b8c_D Glucose-repressible alc 97.5 4.6E-06 1.6E-10 81.4 -3.7 106 122-236 222-328 (727)
122 3j0a_A TOLL-like receptor 5; m 97.5 3.4E-06 1.2E-10 83.7 -4.7 134 97-238 47-188 (844)
123 2id5_A Lingo-1, leucine rich r 97.5 3.6E-06 1.2E-10 77.8 -4.6 135 97-238 55-190 (477)
124 2v9t_B SLIT homolog 2 protein 97.5 4.5E-06 1.5E-10 69.1 -3.6 111 124-239 32-143 (220)
125 3zyi_A Leucine-rich repeat-con 97.5 4.2E-06 1.4E-10 76.9 -4.2 135 98-239 75-211 (452)
126 3oja_B Anopheles plasmodium-re 97.5 1.1E-05 3.7E-10 76.9 -1.5 106 121-236 251-357 (597)
127 3zyj_A Leucine-rich repeat-con 97.4 2.2E-06 7.5E-11 78.6 -6.2 135 98-239 64-200 (440)
128 2z62_A TOLL-like receptor 4, v 97.4 2E-05 6.9E-10 67.2 -0.2 62 122-185 98-159 (276)
129 2xot_A Amphoterin-induced prot 97.4 8.1E-06 2.8E-10 72.8 -3.0 111 122-236 62-175 (361)
130 1ziw_A TOLL-like receptor 3; i 97.4 2.1E-05 7.3E-10 75.8 -0.8 114 122-238 502-623 (680)
131 3j0a_A TOLL-like receptor 5; m 97.3 1.7E-06 5.7E-11 86.0 -9.2 137 98-238 24-162 (844)
132 2id5_A Lingo-1, leucine rich r 97.3 1.9E-05 6.6E-10 72.9 -1.5 133 98-237 80-213 (477)
133 3g06_A SSPH2 (leucine-rich rep 97.3 0.00019 6.4E-09 68.7 5.3 76 149-236 220-296 (622)
134 1ogq_A PGIP-2, polygalacturona 97.3 3.8E-06 1.3E-10 73.4 -6.3 136 98-237 50-187 (313)
135 3rw6_A Nuclear RNA export fact 97.2 0.00033 1.1E-08 59.6 5.1 87 116-205 162-257 (267)
136 2xot_A Amphoterin-induced prot 97.2 1.4E-05 4.6E-10 71.3 -4.1 111 123-238 38-150 (361)
137 3cvr_A Invasion plasmid antige 97.0 0.00018 6.3E-09 68.0 2.1 79 148-238 138-221 (571)
138 2ft3_A Biglycan; proteoglycan, 97.0 1.7E-05 5.8E-10 69.7 -4.8 38 197-235 215-252 (332)
139 4g8a_A TOLL-like receptor 4; l 97.0 1.2E-05 4.1E-10 76.5 -6.3 38 197-235 516-553 (635)
140 2xwt_C Thyrotropin receptor; s 97.0 9.4E-06 3.2E-10 67.8 -6.5 132 98-237 55-192 (239)
141 3cvr_A Invasion plasmid antige 96.9 0.00014 4.8E-09 68.8 0.4 121 99-238 121-244 (571)
142 2xwt_C Thyrotropin receptor; s 96.9 1.9E-05 6.4E-10 66.0 -5.3 133 98-238 31-170 (239)
143 2r9u_A Variable lymphocyte rec 96.8 7.5E-05 2.6E-09 59.3 -2.2 42 196-238 78-119 (174)
144 2ft3_A Biglycan; proteoglycan, 96.8 6.1E-05 2.1E-09 66.1 -3.4 109 124-237 193-307 (332)
145 2o6r_A Variable lymphocyte rec 96.8 9.3E-05 3.2E-09 58.6 -2.1 87 149-238 27-114 (177)
146 4b8c_D Glucose-repressible alc 96.7 0.00016 5.3E-09 70.6 -1.4 105 97-213 223-330 (727)
147 3g06_A SSPH2 (leucine-rich rep 96.7 0.00092 3.1E-08 63.9 3.9 15 198-212 180-194 (622)
148 3g39_A Variable lymphocyte rec 96.6 0.00012 4.2E-09 57.7 -2.2 41 196-237 75-115 (170)
149 2wfh_A SLIT homolog 2 protein 96.6 0.00027 9.3E-09 57.0 -0.4 87 149-239 30-117 (193)
150 1w8a_A SLIT protein; signaling 96.5 0.00012 4.2E-09 59.0 -3.1 87 150-238 29-116 (192)
151 2r9u_A Variable lymphocyte rec 96.4 0.00039 1.3E-08 55.1 -0.6 85 124-212 33-118 (174)
152 3g39_A Variable lymphocyte rec 96.4 0.00033 1.1E-08 55.2 -1.0 85 124-212 30-115 (170)
153 1jl5_A Outer protein YOPM; leu 96.4 0.00076 2.6E-08 62.0 1.1 34 200-236 216-249 (454)
154 1jl5_A Outer protein YOPM; leu 96.3 0.0012 4.1E-08 60.6 1.8 77 147-236 192-269 (454)
155 3sb4_A Hypothetical leucine ri 96.1 0.00039 1.3E-08 60.9 -2.6 20 114-133 216-235 (329)
156 3sb4_A Hypothetical leucine ri 95.5 0.0051 1.7E-07 53.6 2.2 12 122-133 122-133 (329)
157 2ifg_A High affinity nerve gro 94.9 0.0014 4.9E-08 57.5 -3.2 87 122-212 29-116 (347)
158 2ifg_A High affinity nerve gro 94.6 0.003 1E-07 55.4 -2.0 16 197-212 78-93 (347)
159 4ay9_X Follicle-stimulating ho 92.5 0.0014 4.7E-08 57.9 -8.0 14 224-237 154-167 (350)
160 4gt6_A Cell surface protein; l 85.3 0.12 4E-06 46.1 -1.0 99 122-233 263-366 (394)
161 4fdw_A Leucine rich hypothetic 85.2 0.067 2.3E-06 48.1 -2.6 14 197-210 269-282 (401)
162 4gt6_A Cell surface protein; l 80.8 0.23 7.8E-06 44.2 -1.0 99 121-232 285-386 (394)
163 4ay9_X Follicle-stimulating ho 76.9 0.023 7.9E-07 49.9 -8.7 39 199-239 154-192 (350)
164 4fdw_A Leucine rich hypothetic 76.7 0.2 6.7E-06 45.0 -2.7 12 122-133 224-235 (401)
165 4fs7_A Uncharacterized protein 54.3 0.94 3.2E-05 40.1 -3.0 33 147-183 273-305 (394)
166 3rfe_A Platelet glycoprotein I 51.3 4.8 0.00016 29.5 1.0 34 200-234 32-65 (130)
167 4h09_A Hypothetical leucine ri 50.8 1.3 4.5E-05 38.8 -2.6 100 121-233 237-342 (379)
168 4fs7_A Uncharacterized protein 45.0 1.3 4.4E-05 39.2 -3.6 98 122-233 274-375 (394)
169 4h09_A Hypothetical leucine ri 34.8 3 0.0001 36.4 -2.8 80 147-232 237-318 (379)
170 2li5_B Ubiquitin-like modifier 20.2 32 0.0011 17.7 0.7 11 296-306 24-34 (34)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=8.4e-26 Score=201.25 Aligned_cols=225 Identities=20% Similarity=0.284 Sum_probs=122.6
Q ss_pred CCCCCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccc--cc----c--ccc--cCCC-----
Q 037159 7 NSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLL--CN----A--FDI--LPSN----- 71 (307)
Q Consensus 7 ~~~~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~--~~----~--~~~--~~~~----- 71 (307)
+.+.|++||+|++.+||+||+..|+.+ +++|||+|+.++.+|.+|+.++++... +. + ... +...
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~-~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD 83 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHH-TTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEEC
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccc
Confidence 467899999999999999999999998 999999999999999999999987641 00 0 000 0000
Q ss_pred ---CCccc-c-----CCCCHHHHHHH-HHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHH
Q 037159 72 ---SNGLS-D-----GHSSWLNAMHI-LNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDG 141 (307)
Q Consensus 72 ---~~~~~-~-----~~~~~~~l~~~-l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~ 141 (307)
+..+. . +.... .+... +.. .-..+.++++|+++.+ .+++.....++. +++|++|+|++|..+++.+
T Consensus 84 ~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 84 QPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp SCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHH
T ss_pred ccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHH
Confidence 00000 0 00000 00000 111 1122345555555543 244444444433 5555555555554455555
Q ss_pred HHHHHhcCCCCCeEEecCC-CCCHHHHHHHHhcCC-CCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCC-CCHHH
Q 037159 142 FRSAIQWWKGLESLTVPFI-SNASSIIQVIGANCK-NFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSI-VDKNA 215 (307)
Q Consensus 142 l~~~~~~~~~L~~L~L~~~-~~~~~~l~~i~~~c~-~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~ 215 (307)
+..++..+++|++|++++| .+++..+..+...++ +|++|+++++ +++..+......+|+|++|++++|. +++.+
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 5555555555555555555 455554444445555 5555555543 3334444444455555555555555 55544
Q ss_pred HHHHHHcCCCCcEEeccCCcCC
Q 037159 216 LNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 216 l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+..+ ..+++|++|++++|..+
T Consensus 240 ~~~l-~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 240 FQEF-FQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp GGGG-GGCTTCCEEECTTCTTC
T ss_pred HHHH-hCCCCCCEeeCCCCCCC
Confidence 4432 34555555555555533
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=3.7e-22 Score=190.69 Aligned_cols=221 Identities=16% Similarity=0.178 Sum_probs=126.2
Q ss_pred CCCCCCCHHHHHHHHhcCC-hHHHhhHHhhhhHHHHHhcCCCCcceeeecCcccc--------ccccc--c--CCCCCc-
Q 037159 9 RNWQNMHYDILVKIFMALR-VTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLC--------NAFDI--L--PSNSNG- 74 (307)
Q Consensus 9 ~~w~~LP~eiL~~If~~L~-~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~~--------~~~~~--~--~~~~~~- 74 (307)
..|++||+|||.+||+||+ .+|+.+ +++|||+|+++ .+..|+.+++..... +|... + ...+..
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~-~s~vck~W~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNS-VSLVCKSWYEI--ERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHH-HHTSCHHHHHH--HHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHH-HHHHHHHHHHh--hhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence 3699999999999999999 899998 99999999999 345677777654310 01000 0 000000
Q ss_pred ---cccCCCCHHHHHHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 037159 75 ---LSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG 151 (307)
Q Consensus 75 ---~~~~~~~~~~l~~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 151 (307)
..+..-.. .....+.. +...+.++++|+++.+. +++..+..++..+++|++|+|.+|..+++.++..++..|++
T Consensus 81 ~~~l~~~~~~~-~~~~~l~~-l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 157 (594)
T 2p1m_B 81 DFNLVPDGWGG-YVYPWIEA-MSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157 (594)
T ss_dssp GGTCSCTTSCC-BCHHHHHH-HHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT
T ss_pred hcccccccccc-hhhHHHHH-HHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC
Confidence 00000000 01111111 22345566777766543 56666666666667777777776655666666666666777
Q ss_pred CCeEEecCCCCCH---HHHHHHHhcCCCCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159 152 LESLTVPFISNAS---SIIQVIGANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS 225 (307)
Q Consensus 152 L~~L~L~~~~~~~---~~l~~i~~~c~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~ 225 (307)
|++|+|++|.+++ ..+..+...|++|++|+++++ +++..+..+...+|+|++|+|.+|. ...++..++..+++
T Consensus 158 L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~l~~~~~~~~~ 236 (594)
T 2p1m_B 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQ 236 (594)
T ss_dssp CCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS-CHHHHHHHHHHCTT
T ss_pred CCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC-cHHHHHHHHhcCCc
Confidence 7777777665422 234444455667777777554 4455555555566777777777663 22336666666777
Q ss_pred CcEEeccCCcC
Q 037159 226 LEALNISHCLL 236 (307)
Q Consensus 226 L~~L~l~~C~~ 236 (307)
|++|++++|..
T Consensus 237 L~~L~l~~~~~ 247 (594)
T 2p1m_B 237 LEELGTGGYTA 247 (594)
T ss_dssp CSEEECSBCCC
T ss_pred ceEcccccccC
Confidence 77777666543
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.6e-19 Score=172.34 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=117.5
Q ss_pred CCCCCHHHHHHHHhcC-ChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccccccccccCCCCCccccCCCCHHHHHHHH
Q 037159 11 WQNMHYDILVKIFMAL-RVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHIL 89 (307)
Q Consensus 11 w~~LP~eiL~~If~~L-~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 89 (307)
..+||+|+|.+||+|| +.+|+.+ +++|||+|+.+.. ..++.+.+... +.. ....
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~-~s~vck~W~~~~~--~~~~~l~~~~~---~~~-----------------~~~~-- 67 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDS-ASLVCRRWFKIDS--ETREHVTMALC---YTA-----------------TPDR-- 67 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHH-HTTSCHHHHHHHH--HHCCEEEESCG---GGS-----------------CHHH--
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHhhh--ccccEEEEeec---ccc-----------------ChHH--
Confidence 3489999999999999 8999998 9999999999942 22334433221 000 0111
Q ss_pred HHHHHhcCCCccEEEeccCCC-------------CCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCC-CCeE
Q 037159 90 NNASILSCKTVKRLIFNYSIY-------------LKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG-LESL 155 (307)
Q Consensus 90 ~~~~~~s~~~l~~L~l~~~~~-------------~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-L~~L 155 (307)
+....++++++++.++.. .....+..++..+++|++|+|+++ .+++.++..+...++. |++|
T Consensus 68 ---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 68 ---LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp ---HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEE
T ss_pred ---HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEE
Confidence 112234466666644221 223445556666666666666655 3666555555544555 6666
Q ss_pred EecCCC-CCHHHHHHHHhcCCCCceEEeecc-C---CHHHHHHHHhcCCCCCEEEecCCCCC---HHHHHHHHHcCCCCc
Q 037159 156 TVPFIS-NASSIIQVIGANCKNFSMLKVMFS-F---DLDFAMSLFMSIPELKVLSLRSSIVD---KNALNLILTLMGSLE 227 (307)
Q Consensus 156 ~L~~~~-~~~~~l~~i~~~c~~L~~L~l~~~-~---~~~~~~~l~~~~p~L~~L~L~~~~it---~~~l~~l~~~~~~L~ 227 (307)
+|++|. +++..+..+...|++|++|+++++ + +...+..+...+|+|++|+++++.++ +.++..++.+||+|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 666665 455566666666666666666554 1 22223444456666666666666643 556666666666666
Q ss_pred EEeccCCcC
Q 037159 228 ALNISHCLL 236 (307)
Q Consensus 228 ~L~l~~C~~ 236 (307)
+|++++|..
T Consensus 224 ~L~L~~~~~ 232 (592)
T 3ogk_B 224 SVKVGDFEI 232 (592)
T ss_dssp EEECSSCBG
T ss_pred EEeccCccH
Confidence 666666543
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=2.4e-13 Score=129.54 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=104.1
Q ss_pred cCCCccEEEe--------ccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEec--C----CC
Q 037159 96 SCKTVKRLIF--------NYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVP--F----IS 161 (307)
Q Consensus 96 s~~~l~~L~l--------~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~--~----~~ 161 (307)
.+.++++|++ ..+..+++..+..++..+++|+.|.+. |..+++.++..+...+|+|++|+++ + +.
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 3566777776 334566777777777777777777553 5567777777777677888888887 2 23
Q ss_pred CC----HHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 162 NA----SSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 162 ~~----~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
++ +..+..+...|++|+.|++++.+++..+..++..+++|++|+|++|.+++.++..++.+|++|+.|+|++|..
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 44 5677777777888888888776777777777766888888888888888888888878888888888888876
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=2.7e-13 Score=129.20 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=103.1
Q ss_pred cCCCccEEEecc----------CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecC----CC
Q 037159 96 SCKTVKRLIFNY----------SIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPF----IS 161 (307)
Q Consensus 96 s~~~l~~L~l~~----------~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~----~~ 161 (307)
.+.+|++|++.. +..+++..+..++..|++|++|++. |..+++.++..+...+++|++|++++ +.
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 455677777763 5566777777766777777777773 55677777766666677777777752 23
Q ss_pred CCH----HHHHHHHhcCCCCceEEeec---cCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 162 NAS----SIIQVIGANCKNFSMLKVMF---SFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 162 ~~~----~~l~~i~~~c~~L~~L~l~~---~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
+++ .++..+...|++|++|+++. .+++..+..+...+|+|++|+|++|.+++.++..++.+|++|++|+|++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 332 45666666777788887743 35777777777778999999999888999888888888999999999999
Q ss_pred cCCC
Q 037159 235 LLGQ 238 (307)
Q Consensus 235 ~~i~ 238 (307)
. ++
T Consensus 499 ~-l~ 501 (592)
T 3ogk_B 499 C-FS 501 (592)
T ss_dssp C-CB
T ss_pred C-Cc
Confidence 8 55
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1.2e-13 Score=122.52 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=86.5
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC-CCCeEEecCC--CCCHHHHHHHHhc
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWK-GLESLTVPFI--SNASSIIQVIGAN 173 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~--~~~~~~l~~i~~~ 173 (307)
..+++.|+++.+..+++..+..+...+++|++|++++|..+++.++...+..++ +|++|++++| .+++..+..+...
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 456777777666566666666666667777777777664566666666666677 7777777776 4565666666666
Q ss_pred CCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159 174 CKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 174 c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
|++|++|+++++ +++..+..+. .+++|++|++++|. +++.++.. +..+++|++|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence 677777777655 2333344343 56777777777774 66665533 244677777777776
No 7
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.48 E-value=2.1e-14 Score=91.86 Aligned_cols=49 Identities=35% Similarity=0.739 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159 7 NSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD 56 (307)
Q Consensus 7 ~~~~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~ 56 (307)
+...|+.||+|++.+||+||+..|+++ +++|||+|+.++.+|.+|+.+|
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~-~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC----
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCChHHHHhcC
Confidence 456799999999999999999999998 9999999999999999999875
No 8
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.40 E-value=3.6e-13 Score=107.61 Aligned_cols=85 Identities=8% Similarity=-0.023 Sum_probs=47.5
Q ss_pred CCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHh---cCCCCCEEEecCCC-CCHHHHHHHHHcCCC
Q 037159 152 LESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFM---SIPELKVLSLRSSI-VDKNALNLILTLMGS 225 (307)
Q Consensus 152 L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~---~~p~L~~L~L~~~~-it~~~l~~l~~~~~~ 225 (307)
|++|++++|.+++.++..+ ..|++|++|+|++| ++|.++..++. .+++|++|+|++|. |||.|+..+. .|++
T Consensus 63 L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~ 140 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN 140 (176)
T ss_dssp EEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred EeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence 4444444444444444444 23444444444443 44444444442 13567777777776 7777776654 4677
Q ss_pred CcEEeccCCcCCC
Q 037159 226 LEALNISHCLLGQ 238 (307)
Q Consensus 226 L~~L~l~~C~~i~ 238 (307)
|++|+|++|..+|
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777777777776
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.36 E-value=9.8e-13 Score=105.06 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=80.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhc---CCCCceEEeecc--CCHHHHHHHHhc
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGAN---CKNFSMLKVMFS--FDLDFAMSLFMS 197 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~---c~~L~~L~l~~~--~~~~~~~~l~~~ 197 (307)
.+|++|++++|. +++.|+..+ ..|++|++|+|++|. ++|.++..++.. |++|++|+|++| ++|.++..++ .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 368888888886 888888765 588888888888885 788888888863 678888988876 7888888886 6
Q ss_pred CCCCCEEEecCCC-CCHHHH--HHHHHcCCCCc
Q 037159 198 IPELKVLSLRSSI-VDKNAL--NLILTLMGSLE 227 (307)
Q Consensus 198 ~p~L~~L~L~~~~-it~~~l--~~l~~~~~~L~ 227 (307)
+|+|++|+|++|. ||+.++ ..+-+..|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8999999999988 888764 45566778776
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=8.5e-11 Score=105.88 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=112.9
Q ss_pred HHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH----hcCCCCCeEEecCCCCCHHH
Q 037159 91 NASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAI----QWWKGLESLTVPFISNASSI 166 (307)
Q Consensus 91 ~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~----~~~~~L~~L~L~~~~~~~~~ 166 (307)
..+.....++++|+++.+ .+++..+..++..+++|+.|+|+++ .+++.+...+. ..+++|++|+|++|.+++..
T Consensus 94 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 94 AVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp HHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred HHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 344444568999999875 5788888888888889999999977 48887766554 24689999999999988777
Q ss_pred HHHHH---hcCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHH---HcCCCCcEEeccCCcC
Q 037159 167 IQVIG---ANCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLIL---TLMGSLEALNISHCLL 236 (307)
Q Consensus 167 l~~i~---~~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~~~L~~L~l~~C~~ 236 (307)
...++ ..+++|++|+++++ +++.++..++ ...++|++|+|++|.+++.+...+. ..+++|++|+|++|..
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 66664 45789999999877 6666655553 4578999999999999998866554 4679999999999864
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.25 E-value=3e-10 Score=92.12 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=98.4
Q ss_pred HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHHh---cCCCCceEEeecc-
Q 037159 113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIGA---NCKNFSMLKVMFS- 185 (307)
Q Consensus 113 d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~~---~c~~L~~L~l~~~- 185 (307)
++.+..+...+++|++|+|+++..+++.++..+ +...+.|++|+|++|.+++.+...++. ..++|++|+|+++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 455667777889999999997746888775554 456789999999999998887776654 4578999999876
Q ss_pred CCHHHHHHHHh---cCCCCCEEEe--cCCCCCHHHHHH---HHHcCCCCcEEeccCCcC
Q 037159 186 FDLDFAMSLFM---SIPELKVLSL--RSSIVDKNALNL---ILTLMGSLEALNISHCLL 236 (307)
Q Consensus 186 ~~~~~~~~l~~---~~p~L~~L~L--~~~~it~~~l~~---l~~~~~~L~~L~l~~C~~ 236 (307)
+++.++..++. ..+.|++|+| .+|.+++++... .+..+++|++|++++|..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 78888777754 4578999999 889999998554 455679999999998864
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.3e-10 Score=104.67 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=111.4
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhh----CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHh
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATR----FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGA 172 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~ 172 (307)
...++.++++.+. +++.....++.. +++|+.|+|+++. +++.++..++..+++|++|+|++|.+++.....++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4578999998755 676665555443 4699999999775 899998888888889999999999999888877764
Q ss_pred ----cCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHH---HcCCCCcEEeccCCcC
Q 037159 173 ----NCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLIL---TLMGSLEALNISHCLL 236 (307)
Q Consensus 173 ----~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~~~L~~L~l~~C~~ 236 (307)
.+++|++|+++++ +++.++..++ ..+++|++|+|++|.+++.++..+. ..+++|+.|+|++|..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 4689999999887 5565555553 4689999999999999999876654 5578999999999965
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=5.5e-10 Score=102.97 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=97.2
Q ss_pred CCCccEEEeccCCCCCHHHHH---HHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC----CCCeEEecCCCCCHHH---
Q 037159 97 CKTVKRLIFNYSIYLKDEHLV---YAATRFPMVKHLALPPCNEITVDGFRSAIQWWK----GLESLTVPFISNASSI--- 166 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~---~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~----~L~~L~L~~~~~~~~~--- 166 (307)
..+++.++++.+. +++.... .....+++|++|+|+++. +++.++..+...++ +|++|++++|.+++..
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4578888888755 5655433 334457889999998754 77777777777676 6999999988876543
Q ss_pred HHHHHhcCCCCceEEeecc-CCHHHHHHHHh----cCCCCCEEEecCCCCCHHHH---HHHHHcCCCCcEEeccCCc
Q 037159 167 IQVIGANCKNFSMLKVMFS-FDLDFAMSLFM----SIPELKVLSLRSSIVDKNAL---NLILTLMGSLEALNISHCL 235 (307)
Q Consensus 167 l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~----~~p~L~~L~L~~~~it~~~l---~~l~~~~~~L~~L~l~~C~ 235 (307)
+......+++|++|+++++ +.+..+..++. ..++|++|++++|.+++.+. ...+..+++|++|++++|.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 3333456788999998776 55555555543 24579999999988887553 4455668899999998887
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=8.7e-10 Score=99.57 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCccEEEeccCCCCCHHHHHH---HHhhCCCccEEecCCCCCCCHHHHHHH----HhcCCCCCeEEecCCCCCHHHHHHH
Q 037159 98 KTVKRLIFNYSIYLKDEHLVY---AATRFPMVKHLALPPCNEITVDGFRSA----IQWWKGLESLTVPFISNASSIIQVI 170 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~---i~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~~~~~~l~~i 170 (307)
.+++.|.++.+. +++..+.. ....+++|++|+|+++ .+++.++..+ +..+++|+.|+|++|.+++.+...+
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 455555555433 23222222 2224556666666654 3555543332 2355666666666665544332222
Q ss_pred ---HhcCCCCceEEeecc-CCHHHHHHHHh-----cCCCCCEEEecCCCCCHHHHHHHH----HcCCCCcEEeccCCcC
Q 037159 171 ---GANCKNFSMLKVMFS-FDLDFAMSLFM-----SIPELKVLSLRSSIVDKNALNLIL----TLMGSLEALNISHCLL 236 (307)
Q Consensus 171 ---~~~c~~L~~L~l~~~-~~~~~~~~l~~-----~~p~L~~L~L~~~~it~~~l~~l~----~~~~~L~~L~l~~C~~ 236 (307)
...+++|+.|+++++ +.+.++..++. .+++|++|+|++|.+++.++..+. .++|+|++|++++|..
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 234556666666544 44443333322 156666666666666654333222 3356666666666554
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=6.9e-10 Score=100.24 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=107.2
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHh---hC---------CCccEEecCCCCCCCHHHHH---HHHhcCCCCCeEEecCC
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAAT---RF---------PMVKHLALPPCNEITVDGFR---SAIQWWKGLESLTVPFI 160 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~---~~---------~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~ 160 (307)
...+++.|+++.+.. ++.....++. .+ ++|+.|+|+++. +++.++. ..+..+++|++|++++|
T Consensus 120 ~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp HCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred hCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 467899999988654 5544443333 33 899999999775 6655544 56678999999999999
Q ss_pred CCCHHHHHHHHh----cCCCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHHc-----CCCCc
Q 037159 161 SNASSIIQVIGA----NCKNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIVDKNALNLILTL-----MGSLE 227 (307)
Q Consensus 161 ~~~~~~l~~i~~----~c~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~-----~~~L~ 227 (307)
.+++.++..+.. .+++|+.|+++++ +++.++..+ ...+|+|++|+|++|.+++.+...+... +++|+
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 998887666554 7899999999877 444433333 3578999999999999999877655543 89999
Q ss_pred EEeccCCcCCC
Q 037159 228 ALNISHCLLGQ 238 (307)
Q Consensus 228 ~L~l~~C~~i~ 238 (307)
+|+|++|..-+
T Consensus 278 ~L~L~~n~i~~ 288 (386)
T 2ca6_A 278 TLRLQYNEIEL 288 (386)
T ss_dssp EEECCSSCCBH
T ss_pred EEECcCCcCCH
Confidence 99999997543
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=1e-09 Score=101.19 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=48.0
Q ss_pred CCCccEEecCCCCCCCHHH---HHHHHhcCCCCCeEEecCCCCCHHHHHHHHhc----CCCCceEEeecc-CCHHH---H
Q 037159 123 FPMVKHLALPPCNEITVDG---FRSAIQWWKGLESLTVPFISNASSIIQVIGAN----CKNFSMLKVMFS-FDLDF---A 191 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~----c~~L~~L~l~~~-~~~~~---~ 191 (307)
+++|+.|++++| .+++.+ +...+..+++|++|++++|.+++.....++.. .++|++|+++++ +++.. +
T Consensus 255 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 344555555444 244433 22223344555555555554444333333321 134444444433 22111 1
Q ss_pred HHHHhcCCCCCEEEecCCCCCHHHHHHHHHc----CCCCcEEeccCC
Q 037159 192 MSLFMSIPELKVLSLRSSIVDKNALNLILTL----MGSLEALNISHC 234 (307)
Q Consensus 192 ~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~----~~~L~~L~l~~C 234 (307)
......+++|++|+|++|.+++.++..+... +++|++|++++|
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 1112234555555555555555554444332 345555555555
No 17
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=5.9e-10 Score=99.85 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=95.8
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh-cCCCCCeEEecCCC---CCHHHH---H
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQ-WWKGLESLTVPFIS---NASSII---Q 168 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~---~~~~~l---~ 168 (307)
..++|++|.+.++....- ..+ ..++|++|+|..| .+++.++..+.. .+|+|++|+|+.+. ..+..+ .
T Consensus 170 ~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456889998876532211 111 3689999999855 488888877764 79999999996421 122112 1
Q ss_pred HHH--hcCCCCceEEeecc-CCHHHHHHHHh--cCCCCCEEEecCCCCCHHHHHHHHH---cCCCCcEEeccCCcCCC
Q 037159 169 VIG--ANCKNFSMLKVMFS-FDLDFAMSLFM--SIPELKVLSLRSSIVDKNALNLILT---LMGSLEALNISHCLLGQ 238 (307)
Q Consensus 169 ~i~--~~c~~L~~L~l~~~-~~~~~~~~l~~--~~p~L~~L~L~~~~it~~~l~~l~~---~~~~L~~L~l~~C~~i~ 238 (307)
.+. ..+|+|+.|++..+ +.+.....+++ .+|+|++|+|+.|.+++.+...+.. .+++|+.|+|++|. ++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence 111 35799999999766 55555555653 6899999999999999998877764 47999999999885 55
No 18
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=3.4e-08 Score=79.88 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHh---hCCCccEEecCCCCCCCHHHHHH---HHhcCCCCCeEEec
Q 037159 85 AMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAAT---RFPMVKHLALPPCNEITVDGFRS---AIQWWKGLESLTVP 158 (307)
Q Consensus 85 l~~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~---~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~ 158 (307)
+...+...+ .....+++|+++.+..++++....++. .+++|++|+|+++. +++.+... .+...+.|++|+|+
T Consensus 24 ~~~~l~~~l-~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 24 VEETLKRIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHH-hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECc
Confidence 444444444 346789999998765888887776655 47899999999775 88887554 45667899999999
Q ss_pred CCCCCHHHHHHHHh---cCCCCceEEe--ecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHH
Q 037159 159 FISNASSIIQVIGA---NCKNFSMLKV--MFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNA 215 (307)
Q Consensus 159 ~~~~~~~~l~~i~~---~c~~L~~L~l--~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~ 215 (307)
+|.+++.+...++. .+++|++|++ ++. ++++++..++ ...++|++|+|++|.+++.+
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 99999998888764 4578999999 555 7787766664 35689999999999998876
No 19
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.90 E-value=1.6e-08 Score=90.44 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred CCCccEEEeccCCC--CCHHHHHHHHhhC-CCccEEecCCCCCCCHH---HHHHHHhc-CCCCCeEEecCCCCCHHHHHH
Q 037159 97 CKTVKRLIFNYSIY--LKDEHLVYAATRF-PMVKHLALPPCNEITVD---GFRSAIQW-WKGLESLTVPFISNASSIIQV 169 (307)
Q Consensus 97 ~~~l~~L~l~~~~~--~~d~~l~~i~~~~-~~L~~L~L~~~~~~~~~---~l~~~~~~-~~~L~~L~L~~~~~~~~~l~~ 169 (307)
..+++.|+++.+.. .....+......+ ++|+.|+|+++. +++. .+...+.. +++|++|+|++|.+++.....
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 35677777766542 1222333333333 667777777654 3332 23333334 347777777777654433222
Q ss_pred HH---hcCC-CCceEEeecc-C---CHHHHHHHHhcCC-CCCEEEecCCCCCHHHHHHH---HHc-CCCCcEEeccCCcC
Q 037159 170 IG---ANCK-NFSMLKVMFS-F---DLDFAMSLFMSIP-ELKVLSLRSSIVDKNALNLI---LTL-MGSLEALNISHCLL 236 (307)
Q Consensus 170 i~---~~c~-~L~~L~l~~~-~---~~~~~~~l~~~~p-~L~~L~L~~~~it~~~l~~l---~~~-~~~L~~L~l~~C~~ 236 (307)
++ ...+ +|++|+++++ + ....+......+| +|++|+|++|.+++.+...+ +.. +++|++|++++|..
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 22 2233 6777777654 2 2222222223443 77777777777665443322 222 35777777777643
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=4.9e-10 Score=87.23 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.++++.+.. ++..+......+++|+.|+++++. ++.. ..+..+++|+.|++++|.++.. +......+++|
T Consensus 17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence 3455565554332 211111122345666666666543 3321 3344566666666666655332 22333345666
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHH--HHHHHcCCCCcEEecc
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNAL--NLILTLMGSLEALNIS 232 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l--~~l~~~~~~L~~L~l~ 232 (307)
+.|+++++ +.+.........+|+|++|++++|.++...- ...+..+|+|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666544 2221111122355666666666665443221 1344556666666654
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=5.8e-10 Score=86.82 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=83.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.++|+.|+++++. +++..+...+..+++|+.|++++|.++.. .....+++|+.|+++++ +... .......+++|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence 4789999999875 55333444567899999999999987544 23345799999999876 3321 23334469999
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|++++|.+++-.....+..+++|++|++++|....
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 9999999999875544567889999999999996543
No 22
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.84 E-value=1.4e-07 Score=84.38 Aligned_cols=139 Identities=18% Similarity=0.187 Sum_probs=95.9
Q ss_pred CccEEEeccCCCCC--HHHHHHHHhh-CCCccEEecCCCCCCC---HHHHHHHHhcC-CCCCeEEecCCCCCHHHHHHHH
Q 037159 99 TVKRLIFNYSIYLK--DEHLVYAATR-FPMVKHLALPPCNEIT---VDGFRSAIQWW-KGLESLTVPFISNASSIIQVIG 171 (307)
Q Consensus 99 ~l~~L~l~~~~~~~--d~~l~~i~~~-~~~L~~L~L~~~~~~~---~~~l~~~~~~~-~~L~~L~L~~~~~~~~~l~~i~ 171 (307)
++++|+++.+..-. ...+..+... +++|++|+|+++. ++ ...+...+..+ ++|++|+|++|.+++.....++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 79999998764322 2334443333 4999999999875 44 34566666677 8999999999987555444443
Q ss_pred h---c-CCCCceEEeecc-CCHH---HHHHHHhcCC-CCCEEEecCCCCCHHH---HHHHHHcCC-CCcEEeccCCcCCC
Q 037159 172 A---N-CKNFSMLKVMFS-FDLD---FAMSLFMSIP-ELKVLSLRSSIVDKNA---LNLILTLMG-SLEALNISHCLLGQ 238 (307)
Q Consensus 172 ~---~-c~~L~~L~l~~~-~~~~---~~~~l~~~~p-~L~~L~L~~~~it~~~---l~~l~~~~~-~L~~L~l~~C~~i~ 238 (307)
. . +++|++|+++++ +++. .+......++ +|++|+|++|.+++.+ +...+..++ +|++|++++|..-+
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 3 2 579999999876 3332 2222223555 9999999999977544 445556674 99999999997543
No 23
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=2.7e-10 Score=90.55 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=92.1
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCC
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK 175 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~ 175 (307)
...+++.|+++.+.. ++..+......+++|+.|+++++. ++.. ..+..+++|+.|++++|.+... +..+...++
T Consensus 22 ~~~~L~~L~l~~n~l-~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKS-NDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBC-BTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCT
T ss_pred CcccCCEEECCCCCC-ChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCC
Confidence 346788888877543 211122223457889999998775 4432 4566788999999999887443 344455678
Q ss_pred CCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHH--HHHHHcCCCCcEEeccCCcCCCc
Q 037159 176 NFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNAL--NLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 176 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l--~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
+|+.|+++++ +.+.........+++|++|++++|.++.... ...+..+|+|++|++++|...+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999876 3321111223478999999999998664321 24667889999999998876553
No 24
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=9e-08 Score=85.62 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=100.9
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHh-hCCCccEEecCCCC-----CCCHHHHHHHH--hcCCCCCeEEecCCCCCHHHHH
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAAT-RFPMVKHLALPPCN-----EITVDGFRSAI--QWWKGLESLTVPFISNASSIIQ 168 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~-~~~~L~~L~L~~~~-----~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~l~ 168 (307)
..+|++|.+.. ..++++.+..++. .+|+|++|+|+.+. .....++..++ ..+|+|+.|+|.+|.+++....
T Consensus 192 ~~~L~~L~L~~-~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIIS-GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEEC-SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEec-CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 46899999976 4578888888875 68999999986321 11112223333 3589999999999998777766
Q ss_pred HHHh--cCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 169 VIGA--NCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 169 ~i~~--~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.++. .+|+|++|+|+.+ +++.++.++. ..+++|+.|+|++|.++++++..+.+.+ ...++++.-.
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 6764 4689999999766 6777777765 4579999999999999999998888755 3446665443
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.68 E-value=1.3e-09 Score=86.59 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=82.0
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
..++|+.|+++++. +++..+...+..+++|+.|++++|.+... . ....+++|+.|+++++ +... .......+++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGG-LDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence 34789999999875 54333444467889999999999987543 2 2345799999999876 2221 2333446999
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|++|+|++|.+++-.....+..+++|++|++++|....
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 99999999998763322345679999999999997654
No 26
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.9e-09 Score=91.85 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCc
Q 037159 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNV 59 (307)
Q Consensus 10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~ 59 (307)
.|++||+||+..||+||+++|+++ +++|||+||.++.||.||+++-.+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~-l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHH-HHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhccchHHHHHHhcc
Confidence 377899999999999999999998 9999999999999999999886543
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.64 E-value=1.2e-08 Score=83.16 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=85.1
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
+++.++++.+..-+-.. ...+++|+.|+++++. ++.- ..+..+++|++|++++|.+++.....++ .+++|+
T Consensus 45 ~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~ 115 (197)
T 4ezg_A 45 SLTYITLANINVTDLTG----IEYAHNIKDLTINNIH-ATNY---NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLT 115 (197)
T ss_dssp TCCEEEEESSCCSCCTT----GGGCTTCSEEEEESCC-CSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCC
T ss_pred CccEEeccCCCccChHH----HhcCCCCCEEEccCCC-CCcc---hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCC
Confidence 57777777644322111 3457888999888773 4332 2456788899999988877654444443 468888
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|+++++ +.+.....+. .+++|++|++++|. +++-. .+..+++|+.|++++|...+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC
T ss_pred EEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC
Confidence 8888766 4443344443 78889999998887 76532 35678889999998886543
No 28
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.61 E-value=1.2e-06 Score=71.07 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=90.6
Q ss_pred HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHHh---cCCCCceEEeecc-
Q 037159 113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIGA---NCKNFSMLKVMFS- 185 (307)
Q Consensus 113 d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~~---~c~~L~~L~l~~~- 185 (307)
++.+..+...-+.|++|+|++...+.+.|...+ +..-..|++|+|++|.+++.+..+|++ .-+.|++|+|+..
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 456777777778899999986556888775554 445568999999999888887766663 3478999999765
Q ss_pred CCHHHHHHHHhcC---CCCCEEEecCC---CCCHHH---HHHHHHcCCCCcEEeccCC
Q 037159 186 FDLDFAMSLFMSI---PELKVLSLRSS---IVDKNA---LNLILTLMGSLEALNISHC 234 (307)
Q Consensus 186 ~~~~~~~~l~~~~---p~L~~L~L~~~---~it~~~---l~~l~~~~~~L~~L~l~~C 234 (307)
+++.++.++++.+ ..|++|+|+++ .+.+++ +...+..-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 7888888887544 47999999864 578776 4455566789999999754
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.56 E-value=9.7e-08 Score=84.56 Aligned_cols=128 Identities=12% Similarity=0.077 Sum_probs=91.5
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCC
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK 175 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~ 175 (307)
...+++.+.+..+....... ...+++|+.|+++++. ++... . +..+++|++|++++|.++.. .. ...++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~--~~-~~~l~ 265 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLS--P-LANLSQLTWLEIGTNQISDI--NA-VKDLT 265 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCC--GG-GTTCT
T ss_pred CCCccceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCc--c-hhcCCCCCEEECCCCccCCC--hh-HhcCC
Confidence 34578888887654433222 3568999999999875 43321 1 67899999999999987542 22 34679
Q ss_pred CCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 176 NFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 176 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|+.|+++++ +.+. .. ...+++|++|++++|.++..... .+..+++|++|++++|...+
T Consensus 266 ~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCC
T ss_pred CcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcccc
Confidence 9999999876 3221 12 35789999999999998875554 35679999999999998544
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.53 E-value=1.7e-08 Score=82.33 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=92.3
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.|.++.+. +++ +.. ...+++|+.|+++++. ++.... ..+..+++|+.|++++|.+++.....++ .+++
T Consensus 65 l~~L~~L~l~~n~-~~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~ 137 (197)
T 4ezg_A 65 AHNIKDLTINNIH-ATN--YNP-ISGLSNLERLRIMGKD-VTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKIN-TLPK 137 (197)
T ss_dssp CTTCSEEEEESCC-CSC--CGG-GTTCTTCCEEEEECTT-CBGGGS-CCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSS
T ss_pred CCCCCEEEccCCC-CCc--chh-hhcCCCCCEEEeECCc-cCcccC-hhhcCCCCCCEEEecCCccCcHhHHHHh-hCCC
Confidence 3578899998763 322 112 2358999999999764 554222 2356799999999999998776666665 5799
Q ss_pred CceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 177 FSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 177 L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
|+.|+++++ +.+. .. ...+|+|++|++++|.+++-. .+..+++|++|++++...
T Consensus 138 L~~L~L~~n~~i~~~--~~-l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 138 VNSIDLSYNGAITDI--MP-LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCEEECCSCTBCCCC--GG-GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC--
T ss_pred CCEEEccCCCCcccc--Hh-hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCccc
Confidence 999999876 3322 22 347999999999999988632 467799999999987653
No 31
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.50 E-value=3.8e-08 Score=84.67 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHhcCChHHHh-hHHhhhhHHHHHhcCCCCcceeee
Q 037159 9 RNWQNMHYDILVKIFMALRVTDLI-FAVSKVCSSWRAASRDPVLWETLD 56 (307)
Q Consensus 9 ~~w~~LP~eiL~~If~~L~~~d~~-~~~s~VCk~Wr~~~~~p~lw~~i~ 56 (307)
.....||+|+|.+||++|+.++++ + |++|||+|+.++.+|.+|+..-
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r-~~~VCk~Wr~l~~~~~~w~~~~ 96 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQA-CRLVCLRWKELVDGAPLWLLKC 96 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHT-GGGTCHHHHHHHTSHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHH-HHHHhHHHHHHhcChHHHHHHh
Confidence 357899999999999999999999 7 9999999999999999998653
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.41 E-value=5.2e-07 Score=79.80 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=91.5
Q ss_pred cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCC
Q 037159 96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK 175 (307)
Q Consensus 96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~ 175 (307)
...+++.++++.+....-.. ...+++|+.|+++++. ++.... +..+++|++|++++|.++.... ...++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~ 243 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKITDLSP---LANLS 243 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred cCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCC
Confidence 35688999988765433222 3568999999999775 433211 6789999999999998743222 45679
Q ss_pred CCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 176 NFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 176 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|++|+++++ +... .. ...+++|++|++++|.+++- ..+..+++|+.|++++|....
T Consensus 244 ~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp TCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCG
T ss_pred CCCEEECCCCccCCC--hh-HhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCC
Confidence 9999999876 2221 12 34789999999999997763 346789999999999996543
No 33
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.38 E-value=5e-08 Score=78.00 Aligned_cols=131 Identities=10% Similarity=0.019 Sum_probs=82.9
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.+.+..+..-. +..+....++|+.|+|+++. ++. + ..+..+++|+.|++++|.++.-. ..+...+++
T Consensus 18 ~~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N~-l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDNE-IRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSSC-CCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred cCCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCCC-CCc--c-cccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence 3467777777653321 12344445689999998764 443 2 34567888999999988764221 122245688
Q ss_pred CceEEeecc-CCHHH-HHHHHhcCCCCCEEEecCCCCCHH--HHHHHHHcCCCCcEEeccCCcC
Q 037159 177 FSMLKVMFS-FDLDF-AMSLFMSIPELKVLSLRSSIVDKN--ALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 177 L~~L~l~~~-~~~~~-~~~l~~~~p~L~~L~L~~~~it~~--~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
|+.|++++. +.+.. +..+ ..+++|++|++++|.++.. .-..++..+|+|+.||++++..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999998765 32211 1122 3788999999998886532 1123567789999999887654
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.32 E-value=6.3e-07 Score=77.67 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+..-.-.. ...+++|+.|+++++. ++. +. .+..+++|++|++++|.+..- ..+ ..+++|
T Consensus 68 ~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~i~~~--~~l-~~l~~L 136 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKD--LS-SLKDLKKLKSLSLEHNGISDI--NGL-VHLPQL 136 (291)
T ss_dssp TTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCC--GG-GGTTCTTCCEEECTTSCCCCC--GGG-GGCTTC
T ss_pred CCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCC--Ch-hhccCCCCCEEECCCCcCCCC--hhh-cCCCCC
Confidence 455566655543222111 2345666666666543 322 11 144566666666666655331 122 234666
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
+.|+++++ +... .. ...+++|++|++++|.+++..- +..+++|++|++++|..
T Consensus 137 ~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred CEEEccCCcCCcc--hh-hccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcC
Confidence 66666544 1111 11 2356666666666666543221 44566666666666643
No 35
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.32 E-value=6.9e-08 Score=77.20 Aligned_cols=110 Identities=15% Similarity=0.007 Sum_probs=77.8
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+++++. ++. +..+....++|+.|++++|.++.- ..+ ..+++|+.|+++++ +... ...+...+|+
T Consensus 17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRI-GEGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCccccc-CcchhhcCCC
Confidence 36799999999875 542 333444456999999999987542 222 45789999999876 2211 1122247899
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|++|+|++|.+++-.-...+..+++|+.|+++++...+
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 99999999998653211245679999999999997654
No 36
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.31 E-value=8.9e-06 Score=65.89 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCCCeEEecCC-CCCHHHHHHHHhc---CCCCceEEeecc-CCHHHHHHHHh---cCCCCCEEEecCCC
Q 037159 139 VDGFRSAIQWWKGLESLTVPFI-SNASSIIQVIGAN---CKNFSMLKVMFS-FDLDFAMSLFM---SIPELKVLSLRSSI 210 (307)
Q Consensus 139 ~~~l~~~~~~~~~L~~L~L~~~-~~~~~~l~~i~~~---c~~L~~L~l~~~-~~~~~~~~l~~---~~p~L~~L~L~~~~ 210 (307)
++.+..+...-+.|++|+|+++ .+++.+...+++. -..|+.|+|+++ ++|.++.++++ .-..|++|+|++|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 4567778888899999999986 8888887777643 368999999876 88888777754 45799999999999
Q ss_pred CCHHHHHHHHHcC---CCCcEEeccCCcC
Q 037159 211 VDKNALNLILTLM---GSLEALNISHCLL 236 (307)
Q Consensus 211 it~~~l~~l~~~~---~~L~~L~l~~C~~ 236 (307)
|+++|...|++.+ +.|++|+|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence 9999999888775 6799999998754
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.27 E-value=3e-08 Score=87.57 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=49.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHH--------hcCCCCceEEeecc-CCHHHHHH
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIG--------ANCKNFSMLKVMFS-FDLDFAMS 193 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~--------~~c~~L~~L~l~~~-~~~~~~~~ 193 (307)
+++|+.|+|+++. ++ .+...+..+++|++|++++|......-..++ ..+++|+.|+++++ +. .....
T Consensus 126 l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 126 FAGLETLTLARNP-LR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp GTTCSEEEEESCC-CC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred cCCCCEEECCCCc-cc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh
Confidence 4556666655443 32 2222344555566666555432111101110 12455555555443 11 00011
Q ss_pred HHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 194 LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 194 l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
...+++|++|+|++|.++. +..-+..+++|++|++++|....
T Consensus 202 -l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 202 -IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp -GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCC
T ss_pred -hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchh
Confidence 2356666666666666542 22224456666666666665544
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.27 E-value=8.4e-07 Score=77.47 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=54.6
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+++++. ++. +. .+..+++|++|++++|.++.... ...+++|+.|+++++ +.+... ...+++
T Consensus 105 ~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 174 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITD--VT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP---LANLSK 174 (308)
T ss_dssp TCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred CCCCCCEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh---hcCCCC
Confidence 35566666666543 222 11 14456666666666665422111 234566666666554 221111 235677
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|++|++++|.+++-. . +..+++|++|++++|....
T Consensus 175 L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 175 LTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCCCB
T ss_pred CCEEECCCCccCcCh--h-hcCCCCCCEEEccCCccCc
Confidence 777777777655322 1 4566777777777765443
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.26 E-value=9.5e-07 Score=77.14 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=49.1
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP 199 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p 199 (307)
..+++|+.|+|+++. ++.- ..+..+++|++|++++|.++.. .. ...+++|+.|+++++ +..... ...++
T Consensus 82 ~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~ 151 (308)
T 1h6u_A 82 KNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNISP---LAGLT 151 (308)
T ss_dssp TTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---GGGCT
T ss_pred ccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEECCCCccCcCcc---ccCCC
Confidence 345566666665543 2221 1234556666666666554321 11 234456666666544 111100 23556
Q ss_pred CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
+|++|++++|.+++-. . +..+++|+.|++++|..
T Consensus 152 ~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC
T ss_pred CccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCcc
Confidence 6666666666554311 1 34556666666665543
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.22 E-value=9.9e-07 Score=84.24 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=16.3
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.+++|++|+|++|.+++- .-+..+++|+.|+|++|.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence 445555555555544431 113334555555555443
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.20 E-value=1.6e-06 Score=75.11 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=88.5
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
+++.+.++.+..-+-.. ...+++|+.|+|+++. ++. +.. +..+++|+.|++++|.+.. +.. ...+++|+
T Consensus 47 ~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~-l~~--~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~ 115 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNK-LTD--IKP-LANLKNLGWLFLDENKVKD--LSS-LKDLKKLK 115 (291)
T ss_dssp TCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSC-CCC--CGG-GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCC
T ss_pred cccEEEccCCCcccChh----HhcCCCCCEEEccCCc-cCC--Ccc-cccCCCCCEEECCCCcCCC--Chh-hccCCCCC
Confidence 57788877654322221 3458999999999875 443 122 6789999999999998754 222 35679999
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|+++++ +.+. ..+ ..+++|++|++++|.++.- ..+..+++|+.|++++|...+
T Consensus 116 ~L~L~~n~i~~~--~~l-~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EEECTTSCCCCC--GGG-GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC
T ss_pred EEECCCCcCCCC--hhh-cCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCcccc
Confidence 9999876 3221 223 4789999999999997763 346779999999999996544
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.19 E-value=7.2e-08 Score=82.67 Aligned_cols=15 Identities=13% Similarity=-0.081 Sum_probs=7.4
Q ss_pred cCCCCCeEEecCCCC
Q 037159 148 WWKGLESLTVPFISN 162 (307)
Q Consensus 148 ~~~~L~~L~L~~~~~ 162 (307)
.+++|++|++++|.+
T Consensus 107 ~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 107 KLTNLKELVLVENQL 121 (272)
T ss_dssp TCTTCCEEECTTSCC
T ss_pred CCcCCCEEECCCCcC
Confidence 445555555555443
No 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.18 E-value=9.6e-07 Score=84.34 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=91.4
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+|+.|+++.+..-.-.. ...+++|+.|+|+++. ++. + ..+..+++|+.|+|++|.+.. +.. ...+++
T Consensus 64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~--l-~~l~~l~~L~~L~Ls~N~l~~--l~~-l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKD--L-SSLKDLKKLKSLSLEHNGISD--ING-LVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCC--C-TTSTTCTTCCEEECTTSCCCC--CGG-GGGCTT
T ss_pred CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCC--C-hhhccCCCCCEEEecCCCCCC--Ccc-ccCCCc
Confidence 4678899988765432221 4568999999999875 443 1 145689999999999998754 223 346799
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+.|+|+++ +... .. ...+++|+.|+|++|.++...- +..+++|+.|+|++|..-.
T Consensus 133 L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CSEEECCSSCCCCC--GG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB
T ss_pred cCEEECCCCccCCc--hh-hcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCC
Confidence 999999876 3221 22 3489999999999999775322 6789999999999996544
No 44
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.16 E-value=8.6e-08 Score=78.18 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=56.8
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+|+++. ++. +. .+..+++|+.|++++|.+.. +......+++|+.|+++++ +... ..+ ..+++
T Consensus 46 ~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~~-~~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SGI-EKLVN 116 (198)
T ss_dssp HTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HHH-HHHHH
T ss_pred cCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Ccc-ccCCC
Confidence 35667777776543 222 11 33456677777777665431 1122233456777777554 2221 122 24567
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
|++|++++|.+++-.....+..+++|++|+++++..
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 777777777666433223445567777777766643
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.16 E-value=8e-08 Score=84.82 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=91.3
Q ss_pred hcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcC
Q 037159 95 LSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANC 174 (307)
Q Consensus 95 ~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c 174 (307)
....+++.|++..+..-. .-..+ ..+++|+.|+|+++. ++ .+...+..+++|++|+|++|.+. .+..-...+
T Consensus 78 ~~~~~l~~L~L~~n~l~~--lp~~l-~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l 149 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQ--FPDQA-FRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNPLR--ALPASIASL 149 (328)
T ss_dssp HTSTTCCEEEEESSCCSS--CCSCG-GGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGC
T ss_pred ccccceeEEEccCCCchh--cChhh-hhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCccc--cCcHHHhcC
Confidence 345788899987754321 01112 237899999999765 44 34444678999999999999875 222223567
Q ss_pred CCCceEEeecc-CCHHHHHHH--------HhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 175 KNFSMLKVMFS-FDLDFAMSL--------FMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 175 ~~L~~L~l~~~-~~~~~~~~l--------~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|+.|+++++ ........+ ...+++|++|+|++|.++ .+..-+..+++|++|++++|....
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc
Confidence 99999999874 111101111 124899999999999977 343446789999999999987654
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.16 E-value=5e-07 Score=78.97 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=70.0
Q ss_pred CCccEEEeccCCCCCH-HHHHHHHh-hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHH--HHHHHH-h
Q 037159 98 KTVKRLIFNYSIYLKD-EHLVYAAT-RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASS--IIQVIG-A 172 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d-~~l~~i~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~l~~i~-~ 172 (307)
.+++.|+++.+..... ..+..+.. ..++|+.|+|+++. ++.. ....+..+++|++|++++|.+... ....+. .
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 3566666665432221 12222211 13677777777553 2211 012234667777777777765432 122221 4
Q ss_pred cCCCCceEEeecc-CC--HHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 173 NCKNFSMLKVMFS-FD--LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 173 ~c~~L~~L~l~~~-~~--~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
.+++|++|+++++ +. ......+...+++|++|+|++|.++...-......+++|++|++++|..-
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 4567777777655 22 12233344466777777777776654321112233567777777776544
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.16 E-value=4.7e-07 Score=79.06 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=82.0
Q ss_pred CCccEEEeccCCCCCHHHHHHHH-hhCCCccEEecCCCCCCCHHH--HH-HHHhcCCCCCeEEecCCCCCHHHHHHHHhc
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAA-TRFPMVKHLALPPCNEITVDG--FR-SAIQWWKGLESLTVPFISNASSIIQVIGAN 173 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~-~~~~~L~~L~L~~~~~~~~~~--l~-~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~ 173 (307)
.++++++++.+...... -..+. ...++|+.|+|+++. ++... +. ..+..+++|++|+|++|.+.......+ ..
T Consensus 91 ~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV-RA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-CC
T ss_pred CceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-cc
Confidence 35888888765432110 00111 446788888888765 33210 11 122378888888888887633221222 34
Q ss_pred CCCCceEEeecc-CCHHHHHH---HHhcCCCCCEEEecCCCCC--HHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 174 CKNFSMLKVMFS-FDLDFAMS---LFMSIPELKVLSLRSSIVD--KNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 174 c~~L~~L~l~~~-~~~~~~~~---l~~~~p~L~~L~L~~~~it--~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+++|++|++++. ........ ....+|+|++|+|++|.++ ......++..+++|++|+++++....
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 678888888776 33322111 1136788999999988876 33333456778889999998887554
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.15 E-value=8.7e-07 Score=82.86 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.++++.+.. ++.....+ ..+++|+.|+|+++....-..+...+..+++|+.|++++|.+....-......+++|
T Consensus 324 ~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 324 SPFLHLDFSNNLL-TDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCEEECCSSCC-CTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CcccEEEeECCcc-Chhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4566666655432 22111111 345677777777654222233444556677777777777665331111112334677
Q ss_pred ceEEeecc-CCHHHHHHHHhcC-CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSI-PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~-p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+.|+++++ +... +...+ ++|+.|+|++|.++ .+..-+..+++|++|++++|...+
T Consensus 402 ~~L~Ls~N~l~~~----~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 402 LSLNMSSNILTDT----IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CEEECCSSCCCGG----GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CEEECcCCCCCcc----hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCc
Confidence 77777654 2221 11223 57788888777766 333323367888888888875443
No 49
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.14 E-value=1e-07 Score=83.28 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=74.1
Q ss_pred CCccEEEeccCCCCCH---HHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHH-HHHHH--H
Q 037159 98 KTVKRLIFNYSIYLKD---EHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASS-IIQVI--G 171 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d---~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~l~~i--~ 171 (307)
.+++.|+++.+..... -....+. .+++|+.|+|+++. ++.. ....+..+++|++|+|++|.+... .+... .
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred CCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4566777766543221 1111122 57778888887654 3211 112334677788888887765432 22111 1
Q ss_pred hcCCCCceEEeecc-CC--HHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcC---CCCcEEeccCCcCCC
Q 037159 172 ANCKNFSMLKVMFS-FD--LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLM---GSLEALNISHCLLGQ 238 (307)
Q Consensus 172 ~~c~~L~~L~l~~~-~~--~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~---~~L~~L~l~~C~~i~ 238 (307)
..+++|++|+++++ +. ......+...+++|++|+|++|.++...-.. +..+ ++|++|++++|....
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCS
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCCc
Confidence 34577778877665 22 2223333446778888888877765421111 1223 677788877776543
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.14 E-value=4.6e-07 Score=82.95 Aligned_cols=47 Identities=28% Similarity=0.536 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCC-CCcceeeecC
Q 037159 11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRD-PVLWETLDLN 58 (307)
Q Consensus 11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~-p~lw~~i~l~ 58 (307)
+..||+|++.+||+||+.+++++ +++|||+|++++.+ +.+|+.+-+.
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHH-HHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 56799999999999999999999 99999999999988 8999987653
No 51
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.12 E-value=1.3e-06 Score=74.58 Aligned_cols=122 Identities=19% Similarity=0.149 Sum_probs=65.1
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
+++.++++.+..-+-. . ...+++|+.|+|+++. ++.- .. +..+++|+.|++++|.++. +..+.. ++|+
T Consensus 42 ~L~~L~l~~n~i~~l~---~-l~~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~~L~L~~N~l~~--l~~~~~--~~L~ 109 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA---G-MQFFTNLKELHLSHNQ-ISDL--SP-LKDLTKLEELSVNRNRLKN--LNGIPS--ACLS 109 (263)
T ss_dssp TCSEEECTTSCCCCCT---T-GGGCTTCCEEECCSSC-CCCC--GG-GTTCSSCCEEECCSSCCSC--CTTCCC--SSCC
T ss_pred cCcEEECcCCCcccch---H-HhhCCCCCEEECCCCc-cCCC--hh-hccCCCCCEEECCCCccCC--cCcccc--Cccc
Confidence 5666666554322111 1 2346777777777654 3321 11 5567777777777776532 111111 6677
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|+++++ +... .. ...+++|++|+|++|.+++-. .+..+++|+.|++++|..-.
T Consensus 110 ~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 110 RLFLDNNELRDT--DS-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EEECCSSCCSBS--GG-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCB
T ss_pred EEEccCCccCCC--hh-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcc
Confidence 7777654 2211 11 235677777777777665421 24556777777777665433
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.12 E-value=1e-08 Score=89.46 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=43.5
Q ss_pred hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159 147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS 225 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~ 225 (307)
..+++|++|++++|.+...... ....+++|++|++++. +...........+++|++|++++|.++.... ..+..+++
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 200 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS 200 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred hhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCC
Confidence 3455555555555543211111 1123456666666543 1110011112356677777777776554211 22345677
Q ss_pred CcEEeccCCcCCC
Q 037159 226 LEALNISHCLLGQ 238 (307)
Q Consensus 226 L~~L~l~~C~~i~ 238 (307)
|++|+++++...+
T Consensus 201 L~~L~L~~N~l~~ 213 (306)
T 2z66_A 201 LQVLNMSHNNFFS 213 (306)
T ss_dssp CCEEECTTSCCSB
T ss_pred CCEEECCCCccCc
Confidence 7777777765443
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.12 E-value=3.3e-07 Score=78.48 Aligned_cols=128 Identities=18% Similarity=0.128 Sum_probs=78.1
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.+.+..+...+-.. ...+++|+.|+++++. ++. + ..+..+++|++|++++|.++...- .....+++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~-l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNK-LHD--I-SALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSC-CCC--C-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred cceeeeeeCCCCcccccc----cccCCCCcEEECCCCC-CCC--c-hhhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence 367788776654322221 2458999999999875 443 2 246689999999999998642211 122456889
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
++|+++++ +... .......+++|++|++++|.++.-. ...+..+++|+.|++++|..
T Consensus 112 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 112 KELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp CEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCc
Confidence 99998765 2211 1111235677777777777655211 12234567777777777643
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.11 E-value=2.7e-06 Score=78.50 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=26.0
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN 162 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 162 (307)
..+++.+++..+....-. . ...+++|+.|+++++. ++.. .. +..+++|++|++++|.+
T Consensus 220 l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIG---T-LASLTNLTDLDLANNQ-ISNL--AP-LSGLTKLTELKLGANQI 277 (466)
T ss_dssp CTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSCC
T ss_pred cCCCCEEECCCCCcccch---h-hhcCCCCCEEECCCCc-cccc--hh-hhcCCCCCEEECCCCcc
Confidence 345666666554322211 1 1235566666665543 2211 00 34455555555555543
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.10 E-value=8.2e-07 Score=81.01 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeec
Q 037159 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL 57 (307)
Q Consensus 10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l 57 (307)
-++.||+|++..||+||+..++++ +++|||+|+.++.++.+|+.+-.
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~-~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHH-HHHHhHHHHhhcCchhHhhhhee
Confidence 478899999999999999999998 99999999999999999997643
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.09 E-value=5.2e-06 Score=72.44 Aligned_cols=139 Identities=16% Similarity=0.099 Sum_probs=86.4
Q ss_pred CCCccEEEeccCCCCCHHHHHHH-HhhCCCccEEecCCCCCCCHH--HHHHHHh-cCCCCCeEEecCCCCCHHHHHHHHh
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYA-ATRFPMVKHLALPPCNEITVD--GFRSAIQ-WWKGLESLTVPFISNASSIIQVIGA 172 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i-~~~~~~L~~L~L~~~~~~~~~--~l~~~~~-~~~~L~~L~L~~~~~~~~~l~~i~~ 172 (307)
..++++|+++.+..... .-..+ ...+++|+.|+|+++. ++.. .+..+.. .+++|++|++++|.+.......+ .
T Consensus 94 l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGT-APPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-R 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-C
T ss_pred cCCccEEEccCCcccch-hHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-c
Confidence 45777887766432210 00001 2456888888888764 3321 2222211 13889999998887643222223 3
Q ss_pred cCCCCceEEeecc-CCHH-H-HHHH-HhcCCCCCEEEecCCCCCH--HHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 173 NCKNFSMLKVMFS-FDLD-F-AMSL-FMSIPELKVLSLRSSIVDK--NALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 173 ~c~~L~~L~l~~~-~~~~-~-~~~l-~~~~p~L~~L~L~~~~it~--~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.+++|+.|++++. +... . ...+ ...+++|++|+|++|.++. .....+...+++|++|+++++....
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 5689999999876 3332 1 2222 1578999999999999873 3344566788999999999987554
No 57
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.09 E-value=2.6e-07 Score=75.23 Aligned_cols=123 Identities=17% Similarity=0.118 Sum_probs=85.5
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.|+++.+..-. +. ....+++|+.|+++++. ++ .+......+++|+.|++++|.++. +..+. .+++
T Consensus 47 l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~ 116 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQIAS--LSGIE-KLVN 116 (198)
T ss_dssp TTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHH
T ss_pred CCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCcCCc--CCccc-cCCC
Confidence 3578888887653322 11 22347899999999764 44 233445567899999999998855 23443 4589
Q ss_pred CceEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCHH---------HHHHHHHcCCCCcEEe
Q 037159 177 FSMLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDKN---------ALNLILTLMGSLEALN 230 (307)
Q Consensus 177 L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~---------~l~~l~~~~~~L~~L~ 230 (307)
|+.|++++. +.. .....+ ..+++|++|++++|.++.. ....++..+|+|+.||
T Consensus 117 L~~L~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHH-TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHH-hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999766 443 222333 4899999999999986543 2234578899999998
No 58
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.06 E-value=7.1e-07 Score=81.30 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=41.7
Q ss_pred CCCCCHH----HHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159 11 WQNMHYD----ILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD 56 (307)
Q Consensus 11 w~~LP~e----iL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~ 56 (307)
++.||+| |+.+||+||+..++++ +++|||+|+.++.++.+|+.+-
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcChHHHHHHH
Confidence 4569999 9999999999999998 9999999999999999999774
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.04 E-value=3.4e-06 Score=77.83 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=78.7
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.+++..+....... ...+++|+.|+++++. ++.. .. +..+++|++|++++|.+.... . ...+++
T Consensus 242 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~ 310 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ-ISNI--SP-LAGLTALTNLELNENQLEDIS--P-ISNLKN 310 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSCCSCCG--G-GGGCTT
T ss_pred CCCCCEEECCCCccccchh----hhcCCCCCEEECCCCc-cCcc--cc-ccCCCccCeEEcCCCcccCch--h-hcCCCC
Confidence 4578888887654332221 3457888888888764 3321 11 557888888888888753321 1 345688
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+.|+++++ +.+... ...+++|+.|++++|.+++. .-+..+++|+.|++++|....
T Consensus 311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCB
T ss_pred CCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCc
Confidence 888888765 221111 24678888888888876653 234567888888888776543
No 60
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.04 E-value=1.1e-07 Score=77.99 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=83.9
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
+++.|+++.+..- . ........+++|+.|+++++. ++.- ....+..+++|++|+++++.++... ......+++|+
T Consensus 29 ~l~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLK-S-LPNGVFDELTSLTQLYLGGNK-LQSL-PNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCC-C-CCTTTTTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCcEEEcCCCccC-c-CChhhhcccccCcEEECCCCc-cCcc-ChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCC
Confidence 5677777664321 1 011112457899999999764 4321 1123467899999999998764211 11224568999
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
.|++++. +.... ......+++|++|+|++|.++... ...+..+++|++|+++++...
T Consensus 104 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 104 ELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp EEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred EEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence 9999765 22111 112247899999999999876321 133567899999999998654
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.02 E-value=8.7e-07 Score=82.87 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=92.7
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.|.++.+....-..+......+++|+.|+++++. ++...-...+..+++|++|++++|.++......+ .++
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~ 422 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPR 422 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTT
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhh---ccc
Confidence 457899999876654433444445678999999999875 4321001124567999999999998865432222 169
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH-HHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNL-ILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~-l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+.|+++++ +. .....+. .+++|++|+|++|.++. +.. .+..+++|+.|+++++....
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence 999999876 33 1112233 79999999999999773 222 35678999999999987654
No 62
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.99 E-value=5.1e-07 Score=82.88 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=58.0
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHH-HHhcCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMS-LFMSIP 199 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~-l~~~~p 199 (307)
.+++|+.|+|+++..... .-...+..+++|++|+|++|.++......+ ..+++|++|+++++ +....... ....++
T Consensus 52 ~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp SCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred cCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 456677777765532110 001224456677777777665532221222 23566777777655 22211111 123566
Q ss_pred CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+|++|+|++|.++...-..++.++++|++|+++++...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 77777777766553322223455677777777666543
No 63
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.98 E-value=1.4e-06 Score=74.24 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=88.7
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.|+++.+..-+-.. ...+++|+.|+|+++. ++. +..+. . ++|+.|++++|.++.. .. ...+++
T Consensus 62 l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~-l~~--l~~~~-~-~~L~~L~L~~N~l~~~--~~-l~~l~~ 129 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNR-LKN--LNGIP-S-ACLSRLFLDNNELRDT--DS-LIHLKN 129 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSC-CSC--CTTCC-C-SSCCEEECCSSCCSBS--GG-GTTCTT
T ss_pred CCCCCEEECCCCccCCChh----hccCCCCCEEECCCCc-cCC--cCccc-c-CcccEEEccCCccCCC--hh-hcCccc
Confidence 4578899988764332222 3568999999999875 432 11222 2 8999999999987542 22 346799
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+.|++++. +.+. .. ...+++|++|++++|.+++. ..+..+++|+.|+++++....
T Consensus 130 L~~L~Ls~N~i~~~--~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 130 LEILSIRNNKLKSI--VM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCEEECTTSCCCBC--GG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccEEECCCCcCCCC--hH-HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence 999999876 3322 12 34799999999999998865 446678999999999886543
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.98 E-value=3.5e-08 Score=93.24 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=15.7
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
.+++|++|+|++|.++.... ..+..+++|++|++++|
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred cccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCC
Confidence 34445555555444432111 11233455555555554
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.96 E-value=3.1e-07 Score=79.07 Aligned_cols=107 Identities=14% Similarity=0.044 Sum_probs=42.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
+++|+.|+++++. ++.. ....+..+++|++|+++++.+.......+ ..+++|+.|++++. +....... ...+++|
T Consensus 104 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L 179 (285)
T 1ozn_A 104 LGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERA-FRGLHSL 179 (285)
T ss_dssp CTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECTTT-TTTCTTC
T ss_pred CcCCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCHHH-hcCcccc
Confidence 4555555555443 2110 01123345555555555554321111111 23455555555443 11100001 1234555
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
++|++++|.++.... ..+..+++|+.|+++++
T Consensus 180 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCH-hHccCcccccEeeCCCC
Confidence 555555554433211 11233455555555554
No 66
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=1.5e-06 Score=82.42 Aligned_cols=106 Identities=18% Similarity=0.128 Sum_probs=76.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
..|+.|+|+++. ++. +.. +..+++|+.|+|++|.++ .+......+++|+.|++++. +.. +..+ ..+++|+
T Consensus 441 ~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l-~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VDGV-ANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CGGG-TTCSSCC
T ss_pred cCceEEEecCCC-CCC--CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cccc-CCCCCCc
Confidence 469999999764 443 333 678999999999999875 22222346799999999876 322 1233 4799999
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|+|++|.++.......+..+++|+.|+++++....
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999997753213345679999999999987654
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.94 E-value=3.2e-07 Score=77.56 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=67.0
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+..-.- .......+++|+.|+|+++. ++.. ....+..+++|++|+|+++.++.-. ......+++|
T Consensus 59 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 133 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTL--SAGVFDDLTELGTLGLANNQ-LASL-PLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKL 133 (251)
T ss_dssp TTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred ccCCEEECCCCcCCcc--CHhHhccCCcCCEEECCCCc-cccc-ChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcc
Confidence 4566666655432110 00111345677777777553 3211 0122346677777777777653111 1112345677
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
+.|++++. +..... .....+++|++|+|++|.++... ...+..+++|+.|+++++..
T Consensus 134 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 134 KELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCB
T ss_pred cEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCce
Confidence 77777654 221111 11235677777777777755211 12345567777777777654
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.93 E-value=4.4e-07 Score=83.31 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=79.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.++|+.|+|+++. ++.. ....+..+++|++|+++++.+...........+++|++|+++++ +.......+ ..+++|
T Consensus 29 ~~~l~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNS-IAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANL 105 (455)
T ss_dssp CTTCCEEECCSSC-CCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTC
T ss_pred CCccCEEEecCCc-cCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccC
Confidence 3789999999764 4431 12345689999999999987632221222345799999999876 322112222 478999
Q ss_pred CEEEecCCCCCHHHHH-HHHHcCCCCcEEeccCCcCCCc
Q 037159 202 KVLSLRSSIVDKNALN-LILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~-~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
++|+|++|.++...+. ..+..+++|++|++++|.....
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 9999999998865443 2356789999999999976553
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.89 E-value=3.8e-07 Score=78.16 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=8.1
Q ss_pred cCCCCCEEEecCCCCC
Q 037159 197 SIPELKVLSLRSSIVD 212 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it 212 (307)
.+++|++|++++|.++
T Consensus 147 ~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCCCC
Confidence 4455555555555443
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.88 E-value=9.5e-08 Score=91.12 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=22.3
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
.+++|++|+|++|.++... ...+.++++|++|++++|...
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp TCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCS
T ss_pred cCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCC
Confidence 4566666666666654321 112345666777777666443
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.87 E-value=9.2e-06 Score=76.30 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=16.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN 162 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 162 (307)
+++|+.|+|+++.-..-......+..+++|++|++++|.+
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 4455555555443111111112344455555555555443
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.86 E-value=2.2e-07 Score=88.51 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=7.6
Q ss_pred cCCCCCEEEecCCCCC
Q 037159 197 SIPELKVLSLRSSIVD 212 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it 212 (307)
.+|+|++|++++|.++
T Consensus 447 ~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFP 462 (606)
T ss_dssp TCTTCCEEECTTCBCG
T ss_pred CCCCCCEEECCCCCCC
Confidence 3444555555544443
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.84 E-value=1.5e-06 Score=78.19 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=62.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.++|+.|+++++. +++. ..+..+++|++|++++|.+.......+ ..+++|+.|+++++ +... ......+|+|
T Consensus 225 ~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L 297 (390)
T 3o6n_A 225 NVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVAL--NLYGQPIPTL 297 (390)
T ss_dssp CSSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEE--ECSSSCCTTC
T ss_pred cccccEEECCCCC-Cccc---HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCccc--CcccCCCCCC
Confidence 4678888887664 3332 245677788888887776543222222 34577777777655 2110 0011356777
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|+|++|.++. +..-+..+++|+.|++++|...+
T Consensus 298 ~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 298 KVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred CEEECCCCccee--cCccccccCcCCEEECCCCccce
Confidence 777777777552 22223456777777777776544
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.84 E-value=1.1e-06 Score=73.20 Aligned_cols=132 Identities=10% Similarity=-0.027 Sum_probs=82.8
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+..-.- .......+++|+.|+|+++. ++.- -...+..+++|+.|+|++|.++... ......+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhh
Confidence 5788888876543221 00112357899999998765 3211 0123467899999999998764211 1122456899
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+.|++++. +. .....+ ..+++|++|+|++|.++.-.- ..+..+++|+.|++++....
T Consensus 115 ~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 115 KELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred CeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 99999765 22 111112 478999999999998663211 34567899999999887654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.83 E-value=4.2e-07 Score=78.76 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|.++.+..-.-.. ...+++|+.|+|+++. ++ .+...+..+++|+.|+++++.++......+ ..+++|
T Consensus 55 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~L 126 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGEL 126 (290)
T ss_dssp TTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTTC
T ss_pred CCCCEEECCCCccCcccC----CCCCCcCCEEECCCCc-CC--cCchhhccCCCCCEEECCCCcCcccCHHHH-cCCCCC
Confidence 456666665533211000 0346777777777653 33 122234567777888887776532111111 345777
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+.|++++. +... .......+++|+.|+|++|.++.- ...++..+++|+.|+++++...+
T Consensus 127 ~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 127 QELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCCc
Confidence 77777654 2110 111123567777777777775521 11233556777777777765443
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.83 E-value=5.6e-07 Score=78.87 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
+++|+.|+|+++. ++......+...+++|++|++++|.++.. ... ..+++|+.|+++++ +... ... ...+++|
T Consensus 143 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l-~~~-~~~l~~L 216 (317)
T 3o53_A 143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFM-GPE-FQSAAGV 216 (317)
T ss_dssp GSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEE-CGG-GGGGTTC
T ss_pred cCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcc-hhh-hcccCcc
Confidence 4555555555442 33221222233455566666655554221 000 12455666666543 1110 001 2245666
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
++|+|++|.++. +...+..+++|+.|+++++...
T Consensus 217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence 666666666552 2222344566666666665543
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.83 E-value=1.3e-06 Score=73.75 Aligned_cols=133 Identities=13% Similarity=0.032 Sum_probs=85.6
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
.++.|+++.+..-.-. ......+++|+.|+|+++. ++.. ....+..+++|+.|+|+++.++.... .....+++|+
T Consensus 36 ~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQ-LQTL-SAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLD 110 (251)
T ss_dssp TCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCC
T ss_pred CCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCc-CCcc-CHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCC
Confidence 5667777664321110 0112357999999999764 4321 11235678999999999998642221 1224569999
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|++++. +... .......+++|++|+|++|.++.-.- ..+..+++|++|+++++....
T Consensus 111 ~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 111 KLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp EEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred EEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc
Confidence 9999876 2211 11122468999999999998763211 235678999999999986554
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.81 E-value=9e-07 Score=72.50 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=75.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.++|+.|+++++. ++.. ....+..+++|++|+++++.+.... ......+++|++|++++. +... .......+++|
T Consensus 27 ~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCC
Confidence 4689999999764 4321 1123568899999999999864221 122245799999999866 2211 11122478999
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|++++|.++... ...+..+++|++|+++++...+
T Consensus 103 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 103 KELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSC
T ss_pred CEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccce
Confidence 99999999876321 1234678999999999986543
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.80 E-value=2e-06 Score=73.91 Aligned_cols=135 Identities=10% Similarity=-0.056 Sum_probs=89.3
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+++.|++..+....- .......+++|+.|+++++. ++.. ....+..+++|++|+++++.++......+ ..+++
T Consensus 104 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~ 178 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNA-LQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHS 178 (285)
T ss_dssp CTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTT
T ss_pred CcCCCEEECCCCcCCEE--CHhHhhCCcCCCEEECCCCc-cccc-CHhHhccCCCccEEECCCCcccccCHHHh-cCccc
Confidence 35778888776543211 01112457899999999764 3321 11235678999999999998643221122 35799
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+.|++++. +.......+ ..+++|++|++++|.++.... ..+..+++|++|+++++....
T Consensus 179 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEEC
T ss_pred cCEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccC
Confidence 999999876 222112222 368999999999999775322 346789999999999987654
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.79 E-value=3.1e-05 Score=72.66 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=35.0
Q ss_pred cCCCCCeEEecCCCCCHHHHHHH--HhcCCCCceEEeecc-CCHH-HHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcC
Q 037159 148 WWKGLESLTVPFISNASSIIQVI--GANCKNFSMLKVMFS-FDLD-FAMSLFMSIPELKVLSLRSSIVDKNALNLILTLM 223 (307)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~~l~~i--~~~c~~L~~L~l~~~-~~~~-~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~ 223 (307)
.+++|++|++++|.+.+...... ...+++|+.|+++++ +... ........+++|++|++++|.++ .+...+..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~ 409 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWP 409 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhccc
Confidence 45555555555555444332221 123355555555443 1111 11112234555555555555443 111112233
Q ss_pred CCCcEEeccCCc
Q 037159 224 GSLEALNISHCL 235 (307)
Q Consensus 224 ~~L~~L~l~~C~ 235 (307)
++|++|++++|.
T Consensus 410 ~~L~~L~Ls~N~ 421 (549)
T 2z81_A 410 EKMRFLNLSSTG 421 (549)
T ss_dssp TTCCEEECTTSC
T ss_pred ccccEEECCCCC
Confidence 444444444443
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.79 E-value=2.9e-07 Score=80.13 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=62.8
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+++++. ++.. ....+..+++|++|+++++.+....+......+++|+.|+++++ +.......+ ..+++
T Consensus 124 ~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 200 (306)
T 2z66_A 124 SLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSS 200 (306)
T ss_dssp TCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTT
T ss_pred hccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCC
Confidence 46778888887654 2210 11234567777777777776543222223345577777777654 221111112 35677
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|++|+|++|.++..... .+..+++|++|++++|...+
T Consensus 201 L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCB
T ss_pred CCEEECCCCccCccChh-hccCcccCCEeECCCCCCcc
Confidence 77777777775532111 13456777777777775443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.78 E-value=1.1e-06 Score=75.05 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=47.5
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+|+++. ++.-. ...+..+++|++|+++++.++...... ...+++|+.|++++. +.... ......+++
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~ 158 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLP-KGVFDKLTS 158 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTCTT
T ss_pred CCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCCcCCccC-HhHccCCcc
Confidence 35666666666543 22100 012345566666666665542211111 123456666666543 11100 011124556
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
|++|+|++|.++.-.. ..+..+++|++|+++++.
T Consensus 159 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCcCcEeCh-hHhccCCCcCEEECCCCc
Confidence 6666666555432111 112345566666665553
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=4e-06 Score=83.22 Aligned_cols=131 Identities=11% Similarity=0.104 Sum_probs=70.8
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH-------hcCCCCCeEEecCCCCCHHHHHH
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAI-------QWWKGLESLTVPFISNASSIIQV 169 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~~~~~~l~~ 169 (307)
..+|+.|.++.+..... +......+++|+.|+|+++..++...+...+ ..+++|+.|+|++|.+. .+..
T Consensus 490 L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~ 565 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA 565 (876)
T ss_dssp CTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred CCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence 35677777766543221 0111234678888888766435542222222 34457888888877764 2222
Q ss_pred --HHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC-CcEEeccCCcC
Q 037159 170 --IGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS-LEALNISHCLL 236 (307)
Q Consensus 170 --i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~-L~~L~l~~C~~ 236 (307)
....+++|+.|+++++ +. .+.. ...+++|+.|+|++|.++ .+..-+..+++ |+.|++++|..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~--~lp~-~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR--HLEA-FGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC--BCCC-CCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCC
T ss_pred hhhhhcCCCCCEEECCCCCcc--cchh-hcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCC
Confidence 2234577777777654 22 1112 235667777777776655 23222444566 66666666653
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.76 E-value=2.5e-06 Score=80.70 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=55.7
Q ss_pred hCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcC-
Q 037159 122 RFPMVKHLALPPCNEITV-DGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSI- 198 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~- 198 (307)
.+++|+.|+|+++. ++. ..+...+..+++|+.|++++|.++...-......+++|+.|+++++ +.. .+...+
T Consensus 375 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~ 449 (562)
T 3a79_B 375 TLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG----SVFRCLP 449 (562)
T ss_dssp SCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG----GGGSSCC
T ss_pred ccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc----chhhhhc
Confidence 35666666666543 332 1233334556666666666665432111111223456666666544 221 111233
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 199 PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 199 p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|+.|+|++|.++ .+..-+..+++|++|+++++...+
T Consensus 450 ~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 450 PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCC
Confidence 47777777777655 222222356777777777765543
No 85
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.76 E-value=1.1e-06 Score=70.09 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+++++. ++.- ....+..+++|++|+++++.++...- .....+++|+.|++++. +... .......+++|+
T Consensus 28 ~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNK-LQSL-PHGVFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEeCCCc-ccEe-CHHHhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCcccc-CHHHhhCCcccC
Confidence 578888887654 3310 11234567888888888887642111 11235688888888765 2211 111224688999
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|++++|.++.- ...++..+++|++|+++++....
T Consensus 104 ~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 104 ELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECcCCcceEe-CHHHhcCCcccCEEEecCCCeec
Confidence 999999987621 11334668999999999886543
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.76 E-value=8.1e-07 Score=81.76 Aligned_cols=132 Identities=19% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+|+.|+++.+..-.- -......+++|+.|+|+++..+..-. ...+..+++|+.|+|++|.++.. .. ...+++
T Consensus 146 l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~ 219 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESI--PSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVG 219 (452)
T ss_dssp CTTCCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC--CC-CTTCTT
T ss_pred cCCCCEEECCCCCccee--CHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc--cc-cccccc
Confidence 35788888876542210 01112357888888888765443211 11245677888888877765321 11 234567
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
|+.|++++. +....... ...+++|+.|+|++|.++.... ..+.++++|+.|+|+++..
T Consensus 220 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred ccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcC
Confidence 777777654 22111111 2356677777777766553211 1234566777777766643
No 87
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.75 E-value=2.4e-06 Score=75.10 Aligned_cols=131 Identities=16% Similarity=0.025 Sum_probs=67.5
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHH-HHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDG-FRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
.+++.|.++.+....- .......+++|+.|+++++. ++..+ ....+..+++|++|+++++.++.-. ....++
T Consensus 121 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~~ 193 (330)
T 1xku_A 121 KTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPS 193 (330)
T ss_dssp TTCCEEECCSSCCCBB--CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTT
T ss_pred ccccEEECCCCccccc--CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCC----cccccc
Confidence 4677787766432211 11223457888888888664 33211 1223456778888888777643200 011256
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
|++|++++. +.......+ ..+++|++|+|++|.++.... ..+..+++|++|++++|...
T Consensus 194 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc
Confidence 677766554 221111111 255666666666666543211 12344666666666666443
No 88
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=5.9e-06 Score=78.30 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159 150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA 228 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~ 228 (307)
..|+.|+|++|.++. +..+ ..+++|+.|+++++ +. .....+ ..+++|+.|+|++|.++. +. -+..+++|+.
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN--VD-GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC--CG-GGTTCSSCCE
T ss_pred cCceEEEecCCCCCC--CcCc-cccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcE
Confidence 368888888887643 2233 44688888888765 22 111122 378888888888888764 33 3566888888
Q ss_pred EeccCCcCCC
Q 037159 229 LNISHCLLGQ 238 (307)
Q Consensus 229 L~l~~C~~i~ 238 (307)
|+++++...+
T Consensus 513 L~Ls~N~l~~ 522 (567)
T 1dce_A 513 LLLCNNRLQQ 522 (567)
T ss_dssp EECCSSCCCS
T ss_pred EECCCCCCCC
Confidence 8888876544
No 89
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.73 E-value=1.8e-06 Score=70.13 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=70.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+|+++. ++. +...+..+++|+.|+|+++.++...-..+ ..+++|++|++++. +....... ...+++|+
T Consensus 31 ~~l~~L~L~~n~-i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRT-FDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSC-CCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTT-TTTCTTCC
T ss_pred CCCCEEECCCCc-Cch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHH-hCCCCCCC
Confidence 578888888654 431 22356678889999998887643221122 34688899988765 22111111 23689999
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|+|++|.++.-. ...+..+++|+.|++++....-
T Consensus 106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 106 LLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeec
Confidence 9999999876311 1234568999999998876543
No 90
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.73 E-value=1.4e-07 Score=82.57 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=6.7
Q ss_pred cCCCCCeEEecCCC
Q 037159 148 WWKGLESLTVPFIS 161 (307)
Q Consensus 148 ~~~~L~~L~L~~~~ 161 (307)
.+++|++|++++|.
T Consensus 123 ~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 123 QIKTLVTLDFSYNA 136 (313)
T ss_dssp GCTTCCEEECCSSE
T ss_pred CCCCCCEEeCCCCc
Confidence 44444555544443
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.73 E-value=1.4e-06 Score=82.36 Aligned_cols=132 Identities=10% Similarity=0.129 Sum_probs=87.4
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcC-CC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANC-KN 176 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c-~~ 176 (307)
.+++.++++.+..-.-..+......+++|+.|+++++. ++...-...+..+++|++|++++|.++.... ... ++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~ 451 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPK 451 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTT
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCc
Confidence 46777777665432212223333568999999999775 3321001134568999999999998865332 223 69
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH-HHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNL-ILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~-l~~~~~~L~~L~l~~C~~i~ 238 (307)
|+.|+++++ +. .-...+. .+++|++|+|++|.++. +.. .+..+++|+.|+++++....
T Consensus 452 L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcCC
Confidence 999999876 22 1111223 78999999999999773 222 35678999999999987654
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.71 E-value=3.2e-06 Score=80.66 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+|+++. ++.. ..+..+++|+.|+|++|.+.......+ ..+++|+.|+++++ +.. +......+|+|+
T Consensus 232 ~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~ 304 (597)
T 3oja_B 232 VELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVA--LNLYGQPIPTLK 304 (597)
T ss_dssp SCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCE--EECSSSCCTTCC
T ss_pred CCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCC--CCcccccCCCCc
Confidence 467777776554 3321 234566677777776666533222222 23466666666544 111 000112456666
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|+|++|.++. +..-+..+++|++|+|++|...+
T Consensus 305 ~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 305 VLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp EEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred EEECCCCCCCc--cCcccccCCCCCEEECCCCCCCC
Confidence 66666666541 22223445666666666665443
No 93
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.71 E-value=3.7e-06 Score=74.62 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=28.4
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHH--HHhcCCCCCeEEecCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRS--AIQWWKGLESLTVPFI 160 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~ 160 (307)
.+++.|+++.+..-.- -......+++|+.|+|+++. ++. +.. .+..+++|++|++++|
T Consensus 100 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~--l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNL--SSSWFKPLSSLTFLNLLGNP-YKT--LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TTCCEEECCSSCCSSC--CHHHHTTCTTCSEEECTTCC-CSS--SCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCEEECCCCcCCcC--CHhHhCCCccCCEEECCCCC-Ccc--cCchhhhccCCCCcEEECCCC
Confidence 4566666655432110 11112346677777776553 221 111 2345666666666665
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.70 E-value=1.3e-06 Score=81.35 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=16.8
Q ss_pred cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159 148 WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF 184 (307)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~ 184 (307)
.+++|+.|+|++|.++......+...+++|+.|++++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 4455555555555443332333333344555555543
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.70 E-value=1.6e-06 Score=82.65 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=78.4
Q ss_pred CccEEEeccCCC--CCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 99 TVKRLIFNYSIY--LKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 99 ~l~~L~l~~~~~--~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
.++.|+++.+.. +....+ ..+++|+.|+|+++. ++.- -...+..+++|++|+|++|.+..-... ....+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f----~~l~~L~~L~Ls~N~-i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCE-IQTI-EDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTCC-CCEE-CTTTTTTCTTCCEEECTTCCCCEECGG-GGTTCTT
T ss_pred CCCEEEeeCCCCCCCCHHHH----hCCCCCCEEECCCCc-CCCc-ChhHhcCCCCCCEEEccCCcCCCCCHH-HhcCCCC
Confidence 466676665432 111112 347888999888764 3310 012346788889999888876322111 2245688
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
|++|+++++ +..-.... ...+++|++|+|++|.++...+......+++|++|+++++..
T Consensus 126 L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCCCChhh-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 888888765 22111111 236788888888888866433444556788888888888754
No 96
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.69 E-value=1.3e-06 Score=85.94 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=33.4
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN 162 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 162 (307)
..+++.|+++.+...... .. ...+++|+.|+|+++. ++.. +...+..+++|++|++++|.+
T Consensus 199 l~~L~~L~Ls~n~l~~~~--~~-l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGI--PF-LGDCSALQHLDISGNK-LSGD-FSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp CTTCCEEECCSSCCCSCC--CB-CTTCCSCCEEECCSSC-CCSC-HHHHTTTCSSCCEEECCSSCC
T ss_pred CCcCCEEECcCCcCCCCC--cc-cccCCCCCEEECcCCc-CCCc-ccHHHhcCCCCCEEECCCCcc
Confidence 456777777665432210 01 2346777777777654 3321 233445666677766666653
No 97
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.69 E-value=1.3e-06 Score=83.22 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=17.1
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
.+++|++|++++|.++...+...+.++++|++|+++++
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 44555555555554432222222344455555555554
No 98
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.68 E-value=2.2e-06 Score=73.25 Aligned_cols=134 Identities=18% Similarity=0.096 Sum_probs=85.3
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
.++.|+++.+..-.-. ......+++|+.|+|+++. ++.- -..++..+++|++|+++++.+..... .....+++|+
T Consensus 38 ~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCC
T ss_pred CCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCC
Confidence 5677777654321100 0011357899999999764 3311 11234678999999999998643211 2224579999
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
.|++++. +..... .....+++|++|+|++|.++.-. ...+..+++|++|+++++...+.
T Consensus 113 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 113 ELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEe
Confidence 9999865 221111 11247899999999999876422 12346789999999999865543
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.68 E-value=1.9e-05 Score=72.87 Aligned_cols=117 Identities=13% Similarity=-0.002 Sum_probs=62.2
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.++++.+..-.-. . ...+++|+.|+|+++. ++.- . +..+++|++|++++|.++... ...+++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~---~-l~~l~~L~~L~Ls~n~-l~~~--~--~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L 108 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT---G-IEKLTGLTKLICTSNN-ITTL--D--LSQNTNLTYLACDSNKLTNLD----VTPLTKL 108 (457)
T ss_dssp TTCCEEECCSSCCCCCT---T-GGGCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSSCCSCCC----CTTCTTC
T ss_pred CCCCEEEccCCCcccCh---h-hcccCCCCEEEccCCc-CCeE--c--cccCCCCCEEECcCCCCceee----cCCCCcC
Confidence 35666666654322211 1 2346777777777654 3321 1 456677777777776653321 2345677
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
+.|++++. +... . ...+++|++|++++|.++.-. +..+++|++|++++|.
T Consensus 109 ~~L~L~~N~l~~l---~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 109 TYLNCDTNKLTKL---D-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CEEECCSSCCSCC---C-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCS
T ss_pred CEEECCCCcCCee---c-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCC
Confidence 77777654 2111 1 235666667766666655421 3445566666666554
No 100
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.66 E-value=1.1e-06 Score=86.25 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=19.3
Q ss_pred HhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159 146 IQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF 184 (307)
Q Consensus 146 ~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~ 184 (307)
+..+++|++|++++|.++......+ ..+++|+.|++++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISS 256 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCS
T ss_pred cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCC
Confidence 3455566666666655543333333 2345666666544
No 101
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.66 E-value=2.1e-06 Score=76.30 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+.. +.-. ......+++|+.|+|+++. ++.. ....+..+++|++|++++|.++......+ ..+++|
T Consensus 52 ~~L~~L~l~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TYIS-NSDLQRCVNLQALVLTSNG-INTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF-KPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH-TTCTTC
T ss_pred ccCcEEECCCCcC-cccC-HHHhccCCCCCEEECCCCc-cCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh-CCCccC
Confidence 4788888876542 2110 0012458999999999764 4421 11235678999999999998743222223 457999
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|++++. +...........+++|++|++++|. ++... ...+.++++|++|++++|....
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCc
Confidence 99999765 2211110123478999999999984 54321 1234678999999999987544
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.65 E-value=1.9e-06 Score=71.36 Aligned_cols=133 Identities=12% Similarity=0.063 Sum_probs=82.3
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
+++.|++..+..-.-. ......+++|+.|+|+++. ++.- ....+..+++|+.|+|+++.++.-. ..+...+++|+
T Consensus 33 ~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~ 107 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQ-ISEL-APDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQ 107 (220)
T ss_dssp TCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSC-CCEE-CTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCc-CCCc-CHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCC
Confidence 4666666554321100 0011347899999999764 4321 1233567899999999999864211 12224568999
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|++++. +....... ...+++|++|+|++|.++.-.- ..+..+++|+.|++++....-
T Consensus 108 ~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 108 LLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCC
Confidence 9999765 22111112 2368999999999998664221 234568999999998876544
No 103
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.65 E-value=1.2e-06 Score=80.24 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=71.9
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+|+.|+++.+..-.- -......+++|+.|+|+++..++.-. ...+..+++|++|+|++|.++.- .. ...+++|
T Consensus 136 ~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L 209 (440)
T 3zyj_A 136 SKLKELWLRNNPIESI--PSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKL 209 (440)
T ss_dssp SSCCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSC
T ss_pred ccCceeeCCCCccccc--CHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc--cc-cCCCccc
Confidence 5778888876532110 00112357888888888765443210 11345678888888888765311 11 2345777
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+.|+++++ +....... ...+++|++|+|++|.++.... ..+..+++|+.|+|+++...
T Consensus 210 ~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCccCccChhh-hccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCC
Confidence 88887654 22111111 2356777777777776553221 12345677777777766443
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.64 E-value=1.4e-05 Score=76.81 Aligned_cols=112 Identities=10% Similarity=0.100 Sum_probs=59.2
Q ss_pred hCCCccEEecCCCCCCCHH----------------HHHHHHh--cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEee
Q 037159 122 RFPMVKHLALPPCNEITVD----------------GFRSAIQ--WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVM 183 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~ 183 (307)
.+++|+.|+|+++. ++.. .+...+. .+++|++|+|++|.+....-..+ ..+++|+.|+++
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECT
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECc
Confidence 35677777776554 4331 0222333 66677777777665432211222 234667777775
Q ss_pred cc--CCH-HHHHHHH-----hcCCCCCEEEecCCCCCHHHHHH--HHHcCCCCcEEeccCCcCC
Q 037159 184 FS--FDL-DFAMSLF-----MSIPELKVLSLRSSIVDKNALNL--ILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 184 ~~--~~~-~~~~~l~-----~~~p~L~~L~L~~~~it~~~l~~--l~~~~~~L~~L~l~~C~~i 237 (307)
++ +.. .....+. ..+++|++|++++|.++ .+.. .+..+++|++|++++|...
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 54 333 2222222 12367777777776665 3333 4556667777777666543
No 105
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.64 E-value=1.8e-06 Score=81.49 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=8.5
Q ss_pred cCCCCCEEEecCCCCC
Q 037159 197 SIPELKVLSLRSSIVD 212 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it 212 (307)
.+++|++|++++|.++
T Consensus 147 ~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 147 NLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp GCTTCCEEECTTSCCC
T ss_pred ccCCCCEEeCcCCccc
Confidence 4555555555555543
No 106
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.63 E-value=5.5e-05 Score=64.40 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=55.9
Q ss_pred hcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeecc-CCHH-HHHHHHhcCCCCCEEEecCCCCCH------HHHH
Q 037159 147 QWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS-FDLD-FAMSLFMSIPELKVLSLRSSIVDK------NALN 217 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~-~~~~-~~~~l~~~~p~L~~L~L~~~~it~------~~l~ 217 (307)
..+|+|++|+|++|.++. ..+..+...+++|+.|+|++. +.+. .+..+ ..+ +|++|+|.+|.++. .-..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHH
Confidence 568889999998887643 233344456788888888765 3221 22222 123 89999999998764 2344
Q ss_pred HHHHcCCCCcEEec
Q 037159 218 LILTLMGSLEALNI 231 (307)
Q Consensus 218 ~l~~~~~~L~~L~l 231 (307)
.++..+|+|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 67788999998874
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.62 E-value=3.9e-06 Score=69.93 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=73.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.++|+.|+|+++. ++.. ....+..+++|++|+|+++.+..-.. .....+++|+.|++++. +... .......+++|
T Consensus 39 ~~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKL-EPGVFDSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCCCEEEcCCCc-cCcc-CHHHhhCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCcCCcc-ChhHhCcchhh
Confidence 3789999999765 4321 11235678999999999987632111 12245689999999766 2211 11122468999
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|+|++|.++ .+..-+..+++|++|+++++..-+
T Consensus 115 ~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 115 KELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CeEeccCCccc--ccCcccccCCCCCEEECCCCcCCc
Confidence 99999999877 233334778999999999885544
No 108
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.61 E-value=5.8e-06 Score=72.60 Aligned_cols=128 Identities=17% Similarity=0.100 Sum_probs=67.4
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHH-HHHHHHhcCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASS-IIQVIGANCKN 176 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~c~~ 176 (307)
.+++.|+++.+.. +. +. ....++|+.|+++++. ++.. ....+..+++|+.|+++++.+... ........+++
T Consensus 100 ~~L~~L~Ls~n~l-~~--l~--~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 100 VKLERLYLSKNQL-KE--LP--EKMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTCCEEECCSSCC-SB--CC--SSCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCCCEEECCCCcC-Cc--cC--hhhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 4666776655432 10 00 0113577777777653 3321 122345677777777777765321 11112244677
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
|+.|++++. +..- . ....++|++|++++|.++.... ..+..+++|++|+++++...
T Consensus 173 L~~L~l~~n~l~~l-~---~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 173 LSYIRIADTNITTI-P---QGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CCEEECCSSCCCSC-C---SSCCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCC
T ss_pred cCEEECCCCccccC-C---ccccccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCc
Confidence 777777654 1110 0 0123677777777777654221 22345677777777777543
No 109
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.61 E-value=5.5e-06 Score=74.50 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=34.0
Q ss_pred CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159 150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA 228 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~ 228 (307)
++|+.|+++++.+++. . ....+++|+.|++++. +....... ...+++|++|+|++|.++.- ......+|+|+.
T Consensus 226 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~ 299 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVAL--NLYGQPIPTLKV 299 (390)
T ss_dssp SSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCE
T ss_pred ccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCCcCccc--CcccCCCCCCCE
Confidence 4555555555554321 1 1233455555555443 11110111 12455555555555554431 111133455555
Q ss_pred EeccCCc
Q 037159 229 LNISHCL 235 (307)
Q Consensus 229 L~l~~C~ 235 (307)
|++++|.
T Consensus 300 L~L~~n~ 306 (390)
T 3o6n_A 300 LDLSHNH 306 (390)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555553
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.60 E-value=7.1e-07 Score=78.18 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=92.7
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+.. +......+...+++|+.|+|+++. ++.. .....+++|++|+|++|.++...- . ...+++|
T Consensus 144 ~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L 216 (317)
T 3o53_A 144 SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGV 216 (317)
T ss_dssp SSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCCEEECCSSCCCEECG-G-GGGGTTC
T ss_pred CCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCCEEECCCCcCCcchh-h-hcccCcc
Confidence 4677787776433 322223334457999999999875 4321 112248999999999998743211 1 3456999
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
+.|++++. +.. +......+++|++|++++|.++...+...+..+++|+.|+++++..++.
T Consensus 217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 99999876 221 1111247899999999999999777888889999999999987776654
No 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.60 E-value=1.2e-06 Score=83.35 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=16.6
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.+++|++|++++|.++... ...+..+++|++|++++|.
T Consensus 423 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCB
T ss_pred CcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCC
Confidence 3445555555554433211 1122334555555555554
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.60 E-value=2.8e-06 Score=70.39 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=76.2
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP 199 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p 199 (307)
..+++|+.|+|+++. ++.- ....+..+++|++|+|++|.++......+ ..+++|++|++++. +.......+ ..++
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~ 129 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDI-EEGAFEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGNDSF-IGLS 129 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTTSS-TTCT
T ss_pred ccCCCCCEEECCCCc-CCEE-CHHHhCCCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHhHc-CCCc
Confidence 457899999999764 4321 01235678999999999998643222222 45799999999765 221111122 3689
Q ss_pred CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
+|++|+|++|.++.-. ...+..+++|+.|+++++....
T Consensus 130 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 130 SVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEEC
T ss_pred cCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcC
Confidence 9999999999876421 1234568999999999886544
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.59 E-value=1.3e-06 Score=70.81 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=65.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+++++. ++...-...+..+++|++|+|+++.++...-..+ ...++|+.|++++. +....... ...+++|+
T Consensus 29 ~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISNKM-FLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECSSS-STTCTTCC
T ss_pred CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCHHH-hcCCCCCC
Confidence 367777777653 3321101124577788888888877643211222 34577888888655 22111111 23678999
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+|+|++|.++... ...+..+++|++|++++....
T Consensus 106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence 9999999876421 123456789999999887654
No 114
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=1.9e-05 Score=78.34 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=49.0
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCH-HHHHHHH------hcCCCCceEEeecc-CCHHHHH
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NAS-SIIQVIG------ANCKNFSMLKVMFS-FDLDFAM 192 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-~~l~~i~------~~c~~L~~L~l~~~-~~~~~~~ 192 (307)
.+++|+.|+|+++.... .+...+..+++|+.|+|++|. ++. .....++ ..+++|+.|+++++ +. ....
T Consensus 489 ~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred cCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 34555555555443111 011233455556666665554 443 2212221 12345666665544 22 1001
Q ss_pred -HHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 193 -SLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 193 -~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
.....+++|+.|+|++|.++ .+. .+..+++|+.|++++|...
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS
T ss_pred hhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc
Confidence 01224556666666665554 222 2344556666666655443
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.56 E-value=2.9e-06 Score=81.61 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhc------CCCCCeEEecCCCCCHHHHHH-
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQW------WKGLESLTVPFISNASSIIQV- 169 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~------~~~L~~L~L~~~~~~~~~l~~- 169 (307)
..+++.|.+..+..... +......+++|+.|+|+++..++...+...+.. +++|++|++++|.++ .+..
T Consensus 248 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred cCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence 34677777766543221 001112467777777776643554223333333 377777777777654 2221
Q ss_pred -HHhcCCCCceEEeecc
Q 037159 170 -IGANCKNFSMLKVMFS 185 (307)
Q Consensus 170 -i~~~c~~L~~L~l~~~ 185 (307)
....+++|+.|+++++
T Consensus 324 ~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYN 340 (636)
T ss_dssp HHHTTCTTCCEEECCSC
T ss_pred hhhccCCCCCEEeCcCC
Confidence 2234567777777543
No 116
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.54 E-value=6.8e-06 Score=79.35 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=17.5
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
.+++|+.|+|++|.++.- ....+..+++|+.|+++++
T Consensus 558 ~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred cccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCC
Confidence 455555555555554410 0112234555556665555
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.53 E-value=2.5e-06 Score=70.63 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=75.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL 201 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L 201 (307)
.+.++.|+|+++. ++...-...+..+++|+.|+|+++.++...-..+ ..+++|+.|++++. +.... ......+++|
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQ-HKMFKGLESL 107 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCC-GGGGTTCSSC
T ss_pred CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccC-HhHhcCCcCC
Confidence 3467899998764 4321111235689999999999998643221122 45689999999876 22111 1122478999
Q ss_pred CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
++|+|++|.++... ...+..+++|+.|+++++...+.
T Consensus 108 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 108 KTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCB
T ss_pred CEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEE
Confidence 99999999976421 12245689999999999866553
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.51 E-value=2.9e-05 Score=71.58 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=42.7
Q ss_pred cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCC
Q 037159 148 WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSL 226 (307)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L 226 (307)
.+++|+.|+++++.++.- . ...+++|+.|+++++ +... . ...+++|++|++++|.++. +. +..+++|
T Consensus 168 ~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L 235 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTE--ID--VTPLTQL 235 (457)
T ss_dssp TCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSC--CC--CTTCTTC
T ss_pred cCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccc--cC--ccccCCC
Confidence 455566666665554321 1 234566666666544 1111 1 2356777777777777654 22 4556777
Q ss_pred cEEeccCCcC
Q 037159 227 EALNISHCLL 236 (307)
Q Consensus 227 ~~L~l~~C~~ 236 (307)
++|+++++..
T Consensus 236 ~~L~l~~N~l 245 (457)
T 3bz5_A 236 TYFDCSVNPL 245 (457)
T ss_dssp SEEECCSSCC
T ss_pred CEEEeeCCcC
Confidence 7777777654
No 119
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.51 E-value=4e-06 Score=72.54 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=84.3
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
.++.|+++.+.. +.-. ......+++|+.|+|+++. ++.- .. ...+++|+.|+++++.+.. +......+++|+
T Consensus 32 ~l~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~ 103 (290)
T 1p9a_G 32 DTTILHLSENLL-YTFS-LATLMPYTRLTQLNLDRAE-LTKL--QV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALT 103 (290)
T ss_dssp TCCEEECTTSCC-SEEE-GGGGTTCTTCCEEECTTSC-CCEE--EC-CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCC
T ss_pred CCCEEEcCCCcC-CccC-HHHhhcCCCCCEEECCCCc-cCcc--cC-CCCCCcCCEEECCCCcCCc--CchhhccCCCCC
Confidence 566777765443 1100 0112357899999999765 4421 11 2578999999999998641 122235678999
Q ss_pred eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
.|++++. +..... .....+++|++|+|++|.++.- ....+..+++|+.|+++++.....
T Consensus 104 ~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 104 VLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp EEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCC
T ss_pred EEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCcc
Confidence 9999876 221111 1124789999999999987632 112346789999999999875543
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.49 E-value=6.2e-06 Score=76.72 Aligned_cols=130 Identities=14% Similarity=0.063 Sum_probs=80.3
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+..-... ......+++|+.|+|+++. ++......+...+++|+.|+|++|.++.. ... ..+++|
T Consensus 120 ~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~-~~l~~L 193 (487)
T 3oja_A 120 QGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKL 193 (487)
T ss_dssp SSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTC
T ss_pred CCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc--ccc-ccCCCC
Confidence 34566666554322110 0011246788888888664 54332333444788999999999886432 111 146889
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+.|+++++ +... ... ...+++|+.|+|++|.++. +...+..+++|+.|+++++...
T Consensus 194 ~~L~Ls~N~l~~~-~~~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 194 KTLDLSSNKLAFM-GPE-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEECCSSCCCEE-CGG-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCCCCCC-CHh-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 99999766 2211 111 2367899999999998773 3333556789999999888765
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.49 E-value=4.6e-06 Score=81.40 Aligned_cols=106 Identities=18% Similarity=0.110 Sum_probs=48.2
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+|+++. +. .+..-+..+++|++|+|++|.++ .+..-...+++|+.|+|+++ +. .....+ ..+++
T Consensus 222 ~l~~L~~L~Ls~n~-l~--~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~ 294 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IF--NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-GSCFQ 294 (727)
T ss_dssp CCCCCCEEECTTSC-CS--CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-GGGTT
T ss_pred cCCCCcEEECCCCC-CC--CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhh-cCCCC
Confidence 34556666665543 22 11111225566666666665543 11111133456666666544 11 101111 24556
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
|++|+|++|.++ .+..-+..+++|+.|+|+++..
T Consensus 295 L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 295 LKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence 666666666544 1221234456666666665543
No 122
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.49 E-value=3.4e-06 Score=83.73 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=74.3
Q ss_pred CCCccEEEeccCCCCC---HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHH-HHh
Q 037159 97 CKTVKRLIFNYSIYLK---DEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQV-IGA 172 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~---d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~-i~~ 172 (307)
..+|+.|+++.+.... ...+ ..+++|+.|+|+++. ++.. ....+..+++|++|+|++|.+++..... ...
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred cccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCCc-Cccc-CHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 3567777776653321 1111 346778888887654 3321 1223456778888888877664322221 123
Q ss_pred cCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCH---HHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 173 NCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDK---NALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 173 ~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~---~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.+++|++|+++++ +...........+++|++|+|++|.++. ..+..+.. ++|+.|+++++....
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYS 188 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcccc
Confidence 4678888888765 2211111122467888888888877543 23333221 678888887775443
No 123
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.46 E-value=3.6e-06 Score=77.83 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=80.8
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159 97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~ 176 (307)
..+|+.|+++.+.. +.-. ......+++|+.|+|+++. ++.-. ...+..+++|++|+|++|.+....-.. ...+++
T Consensus 55 l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~ 129 (477)
T 2id5_A 55 FPHLEELELNENIV-SAVE-PGAFNNLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENKIVILLDYM-FQDLYN 129 (477)
T ss_dssp CTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTT
T ss_pred CCCCCEEECCCCcc-CEeC-hhhhhCCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCccccCChhH-cccccc
Confidence 45777887766432 2100 0111347888888888654 33210 113456788888888888753221111 245688
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|++|++++. +.......+ ..+++|++|+|++|.++.-. ...+..+++|+.|+++++....
T Consensus 130 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCE
T ss_pred CCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcE
Confidence 888888764 221111112 36789999999998866422 2345678999999998886544
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.46 E-value=4.5e-06 Score=69.11 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=75.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+|+++. ++.- ....+..+++|+.|+|+++.+.......+ ..+++|+.|++++. +.. ........+++|+
T Consensus 32 ~~l~~L~l~~n~-i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSC-CCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCEEECCCCc-CCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCc-cCHhHccCCCCCC
Confidence 689999999764 4321 01235678999999999998743222222 45689999999876 221 1112234789999
Q ss_pred EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
+|+|++|.++.... ..+..+++|++|+++++...+.
T Consensus 108 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE
Confidence 99999999764221 2345789999999999876553
No 125
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.46 E-value=4.2e-06 Score=76.93 Aligned_cols=135 Identities=13% Similarity=-0.021 Sum_probs=82.6
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+.. +.-. ......+++|+.|+|+++. ++.. ....+..+++|++|+|++|.++...- .....+++|
T Consensus 75 ~~l~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNI-QMIQ-ADTFRHLHHLEVLQLGRNS-IRQI-EVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTC
T ss_pred CCccEEECcCCcC-ceEC-HHHcCCCCCCCEEECCCCc-cCCc-ChhhccCcccCCEEECCCCcCCccCh-hhhcccCCC
Confidence 4677888876432 1100 0111357899999998764 4321 11235678999999999987642111 112457899
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
++|++++. +.... ......+++|++|+++++. ++.-. ...+.++++|++|++++|.....
T Consensus 150 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 150 RELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC
T ss_pred CEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc
Confidence 99999765 22111 1122478999999999855 43211 12345789999999999876553
No 126
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.46 E-value=1.1e-05 Score=76.94 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=68.3
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP 199 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p 199 (307)
..+++|+.|+|+++. ++.. ....+..+++|+.|+|++|.++. +......+++|+.|+++++ +. .....+ ..++
T Consensus 251 ~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~ 324 (597)
T 3oja_B 251 LNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFD 324 (597)
T ss_dssp GGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHT
T ss_pred ccCCCCCEEECCCCc-cCCC-CHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCC-ccCccc-ccCC
Confidence 457888888888764 4321 12235578888888888887643 1122234688888888765 22 111112 3578
Q ss_pred CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
+|+.|+|++|.++... +..+++|+.|+|+++..
T Consensus 325 ~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCE
T ss_pred CCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCC
Confidence 8888888888866432 45678888888888764
No 127
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.45 E-value=2.2e-06 Score=78.56 Aligned_cols=135 Identities=15% Similarity=0.062 Sum_probs=84.0
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+.. ..-... ....+++|+.|+|+++. ++.-. ...+..+++|++|+|++|.++...-. ....+++|
T Consensus 64 ~~l~~L~L~~n~i-~~~~~~-~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQI-QIIKVN-SFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCC-CEECTT-TTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSC
T ss_pred CCCcEEEccCCcC-CeeCHH-HhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCCcCCeeCHh-HhhccccC
Confidence 4677788776432 110001 12457899999999764 43211 12456789999999999876422111 12456899
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
+.|++++. +..... .....+++|++|+|+++. ++.-. ...+.++++|++|++++|...+.
T Consensus 139 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 139 KELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp CEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC
T ss_pred ceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc
Confidence 99999765 221111 112478999999999865 44211 12346789999999999966543
No 128
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.41 E-value=2e-05 Score=67.23 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=33.4
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS 185 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~ 185 (307)
.+++|+.|+++++. ++... ...+..+++|++|+++++.+....+......+++|+.|+++++
T Consensus 98 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 98 GLSSLQKLVAVETN-LASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TCTTCCEEECTTSC-CCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCccccEEECCCCC-ccccC-chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 35677777776553 22100 0014466777777777776533222222334577777777654
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.40 E-value=8.1e-06 Score=72.81 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=52.1
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.+++|+.|+|+++. ++.-. ...+..+++|++|+|++|.+....-. ....+++|+.|++++. +....... ...+++
T Consensus 62 ~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~ 137 (361)
T 2xot_A 62 RLTNLHSLLLSHNH-LNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQ 137 (361)
T ss_dssp CCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTT-TTTCTT
T ss_pred cccccCEEECCCCc-CCccC-hhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHH-hCCccc
Confidence 45667777776543 32110 01234566677777766654321111 1134466666766554 11110111 125666
Q ss_pred CCEEEecCCCCCHHHHHH--HHHcCCCCcEEeccCCcC
Q 037159 201 LKVLSLRSSIVDKNALNL--ILTLMGSLEALNISHCLL 236 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~--l~~~~~~L~~L~l~~C~~ 236 (307)
|++|+|++|.++.-.... -...+++|+.|+|+++..
T Consensus 138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 677777666654311100 013466666666666543
No 130
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.35 E-value=2.1e-05 Score=75.84 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=68.0
Q ss_pred hCCCccEEecCCCCCCCHHH-------HHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHH
Q 037159 122 RFPMVKHLALPPCNEITVDG-------FRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMS 193 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~-------l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~ 193 (307)
.+++|+.|+|+++. ++.-. ....+..+++|+.|+|++|.++.-. ......+++|+.|++++. +.. ....
T Consensus 502 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 578 (680)
T 1ziw_A 502 GLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNT-LPAS 578 (680)
T ss_dssp TCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred cccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC-HHHcccccCcceeECCCCCCCc-CCHh
Confidence 45667777776543 22110 0011456777888888777654111 112245688888888765 221 1111
Q ss_pred HHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 194 LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 194 l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
....+++|+.|+|++|.++.-.-..+...+++|+.|+++++.-.-
T Consensus 579 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 224789999999999987643322232367899999999876554
No 131
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.33 E-value=1.7e-06 Score=85.98 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=90.7
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+.. +.-.- .....+++|+.|+|+++.....- -...+..+++|+.|+|++|.+.......+ ..+++|
T Consensus 24 ~~l~~LdLs~N~i-~~i~~-~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYI-RTVTA-SSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHL 99 (844)
T ss_dssp TTCCEEEEESCCC-CEECS-SSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSC
T ss_pred CCcCEEECCCCcC-CccCh-hHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCccc
Confidence 5788888887542 21100 01145799999999987433210 02335789999999999998643322223 457999
Q ss_pred ceEEeecc-CCHHHHHH-HHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 178 SMLKVMFS-FDLDFAMS-LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~-l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
++|+++++ ..+..... ....+++|++|+|++|.++.......+.++++|++|+++++....
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99999876 22111111 124789999999999997754433456789999999999986543
No 132
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.33 E-value=1.9e-05 Score=72.87 Aligned_cols=133 Identities=16% Similarity=0.038 Sum_probs=73.1
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+|+.|+++.+.. +.- -......+++|+.|+|+++. ++.. ....+..+++|++|+++++.+.......+ ..+++|
T Consensus 80 ~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 154 (477)
T 2id5_A 80 FNLRTLGLRSNRL-KLI-PLGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSL 154 (477)
T ss_dssp TTCCEEECCSSCC-CSC-CTTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTC
T ss_pred ccCCEEECCCCcC-Ccc-CcccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCCCccceeChhhc-cCCCCC
Confidence 4677787765432 110 00111346888888888664 3211 11234577888888888776532221122 346788
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
++|+++++ +....... ...+++|+.|+|.++.++...- ..+..+++|++|++++|..+
T Consensus 155 ~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp CEEEEESCCCSSCCHHH-HTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTC
T ss_pred CEEECCCCcCcccChhH-hcccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccc
Confidence 88888765 22111122 2367788888888777553211 12345667777777766544
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.32 E-value=0.00019 Score=68.71 Aligned_cols=76 Identities=24% Similarity=0.105 Sum_probs=45.1
Q ss_pred CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCc
Q 037159 149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLE 227 (307)
Q Consensus 149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~ 227 (307)
+++|+.|++++|.++. +...+++|+.|+++++ +. .+...+++|+.|+|++|.++ .+...+.++++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~-----~lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLT-----SLPMLPSGLLSLSVYRNQLT--RLPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCS-----CCCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCC-----cCCcccccCcEEeCCCCCCC--cCCHHHhhccccC
Confidence 3566666766665532 1134567777777654 21 11114667777777777766 2333356677788
Q ss_pred EEeccCCcC
Q 037159 228 ALNISHCLL 236 (307)
Q Consensus 228 ~L~l~~C~~ 236 (307)
.|+|+++..
T Consensus 288 ~L~L~~N~l 296 (622)
T 3g06_A 288 TVNLEGNPL 296 (622)
T ss_dssp EEECCSCCC
T ss_pred EEEecCCCC
Confidence 888777764
No 134
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.29 E-value=3.8e-06 Score=73.40 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=87.2
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
++++.++++.+..-....+......+++|+.|+|+++..++.. +...+..+++|++|+++++.++......+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCC
Confidence 6899999887544220001112245899999999853333321 22335689999999999988643222223 456999
Q ss_pred ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC-CCcEEeccCCcCC
Q 037159 178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG-SLEALNISHCLLG 237 (307)
Q Consensus 178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~-~L~~L~l~~C~~i 237 (307)
++|++++. +.......+ ..+++|++|++++|.++...- .-+..++ +|++|+++++...
T Consensus 128 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEE
T ss_pred CEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeee
Confidence 99999865 221111122 478999999999998763221 2234565 9999999998654
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.21 E-value=0.00033 Score=59.59 Aligned_cols=87 Identities=17% Similarity=0.112 Sum_probs=60.5
Q ss_pred HHHHHhhCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEecCCCCCHH-HHHHHHhcCCCCceEEeecc-CC-----
Q 037159 116 LVYAATRFPMVKHLALPPCNEITV-DGFRSAIQWWKGLESLTVPFISNASS-IIQVIGANCKNFSMLKVMFS-FD----- 187 (307)
Q Consensus 116 l~~i~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~c~~L~~L~l~~~-~~----- 187 (307)
+..+...+|+|++|+|++.. ++. .++...+..+++|+.|+|++|.+.+. .+..+. .. +|++|.+.+. +.
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSS
T ss_pred HHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCc
Confidence 34455679999999999765 433 34556677899999999999987543 333332 22 8999999765 22
Q ss_pred H-HHHHHHHhcCCCCCEEE
Q 037159 188 L-DFAMSLFMSIPELKVLS 205 (307)
Q Consensus 188 ~-~~~~~l~~~~p~L~~L~ 205 (307)
. .....+...+|+|+.|+
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 1 22334556899999987
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.17 E-value=1.4e-05 Score=71.33 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=74.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHh-cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 123 FPMVKHLALPPCNEITVDGFRSAIQ-WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 123 ~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
.++++.|+|+++. ++.-. ...+. .+++|+.|+|++|.++...-..+ ..+++|+.|++++. +... .......+++
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHTL-DEFLFSDLQA 113 (361)
T ss_dssp CTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred CCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence 3568999999764 44311 11233 78999999999998643221222 35699999999876 2211 1112247899
Q ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
|++|+|++|.++.-. ...+..+++|+.|+|+++....
T Consensus 114 L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 114 LEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCS
T ss_pred CCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCe
Confidence 999999999977421 1234678999999999986554
No 137
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.05 E-value=0.00018 Score=67.99 Aligned_cols=79 Identities=10% Similarity=0.006 Sum_probs=35.9
Q ss_pred cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH----HHHc
Q 037159 148 WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNL----ILTL 222 (307)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~----l~~~ 222 (307)
.+++|+.|+|++|.++. +...+++|+.|+++++ +.. +..+ .++|++|+|++|.++. +.. +...
T Consensus 138 ~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~~--lp~~~~~L~~~ 205 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-----LPELPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLES--LPAVPVRNHHS 205 (571)
T ss_dssp CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS--CCCCC------
T ss_pred cCccccEEeCCCCccCc-----CCCcCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCCc--hhhHHHhhhcc
Confidence 45566666666655422 1113456666666544 111 0001 1566777777666541 111 1111
Q ss_pred CCCCcEEeccCCcCCC
Q 037159 223 MGSLEALNISHCLLGQ 238 (307)
Q Consensus 223 ~~~L~~L~l~~C~~i~ 238 (307)
.+.|+.|+++++..-+
T Consensus 206 ~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 206 EETEIFFRCRENRITH 221 (571)
T ss_dssp --CCEEEECCSSCCCC
T ss_pred cccceEEecCCCccee
Confidence 2233777777665443
No 138
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.04 E-value=1.7e-05 Score=69.68 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=16.9
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.+++|++|+|++|.++.... ..+..+++|++|++++|.
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCc
Confidence 34555555555554432111 112344555555555553
No 139
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.04 E-value=1.2e-05 Score=76.54 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=15.7
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159 197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~ 235 (307)
.+++|++|+|++|.++.-.- ..+.++++|++|+++++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCc
Confidence 34455555555544332100 112334455555555443
No 140
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.01 E-value=9.4e-06 Score=67.84 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=61.2
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF 177 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L 177 (307)
.+++.|+++.+..++.-. ......+++|+.|++++|..++.-. ...+..+++|++|++++|.++. +.. ...+++|
T Consensus 55 ~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L 129 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST 129 (239)
T ss_dssp TTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred CCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence 456666665543221100 0001345677777776533333110 1123456677777777665422 111 2344556
Q ss_pred c---eEEeecc--CCHHHHHHHHhcCCCCC-EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 178 S---MLKVMFS--FDLDFAMSLFMSIPELK-VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 178 ~---~L~l~~~--~~~~~~~~l~~~~p~L~-~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
+ .|++++. +..... .....+++|+ +|++++|.++.-.- ..... ++|+.|+++++..+
T Consensus 130 ~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp CSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTC
T ss_pred ccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCc
Confidence 5 6666543 111000 1112566777 77777766542111 11222 56777777776533
No 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.95 E-value=0.00014 Score=68.78 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=73.9
Q ss_pred CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159 99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS 178 (307)
Q Consensus 99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~ 178 (307)
+++.|+++.+..-. +. ..+++|+.|+|+++. ++. +. ..+++|+.|+|++|.++. +..+. ++|+
T Consensus 121 ~L~~L~Ls~N~l~~---lp---~~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~L~~--lp~l~---~~L~ 183 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM---LP---ELPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQLTF--LPELP---ESLE 183 (571)
T ss_dssp TCCEEECCSSCCSC---CC---CCCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSC--CCCCC---TTCC
T ss_pred CCCEEECCCCcCCC---CC---CcCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCCCCC--cchhh---CCCC
Confidence 56666666543221 11 146789999998764 432 22 157899999999998643 21222 8999
Q ss_pred eEEeecc-CCH--HHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 179 MLKVMFS-FDL--DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 179 ~L~l~~~-~~~--~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
.|+++++ +.. .....+....+.|+.|+|++|.++. +..-+..+++|+.|+|+++....
T Consensus 184 ~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred EEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence 9999876 220 0000122223445999999999773 33333458999999999987543
No 142
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.92 E-value=1.9e-05 Score=65.96 Aligned_cols=133 Identities=5% Similarity=-0.037 Sum_probs=81.7
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecC-CCCCHHHHHHHHhcCCC
Q 037159 98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPF-ISNASSIIQVIGANCKN 176 (307)
Q Consensus 98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~c~~ 176 (307)
..++.+++..+..-.-. ......+++|+.|+++++..++.-. ...+..+++|++|++++ +.++.-.. .....+++
T Consensus 31 ~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT-TSEECCTT
T ss_pred CcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCC
Confidence 46888888764421100 0012357899999999774233210 11346789999999998 66532111 12245789
Q ss_pred CceEEeecc-CCHHHHHHHHhcCCCCC---EEEecCC-CCCHHHHHHHHHcCCCCc-EEeccCCcCCC
Q 037159 177 FSMLKVMFS-FDLDFAMSLFMSIPELK---VLSLRSS-IVDKNALNLILTLMGSLE-ALNISHCLLGQ 238 (307)
Q Consensus 177 L~~L~l~~~-~~~~~~~~l~~~~p~L~---~L~L~~~-~it~~~l~~l~~~~~~L~-~L~l~~C~~i~ 238 (307)
|+.|++++. +.. +.. ...+++|+ +|++++| .++.-.- ..+.++++|+ .|+++++...+
T Consensus 107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCE
T ss_pred CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcc
Confidence 999999765 221 111 23677777 9999999 6653211 1245689999 99999886544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.83 E-value=7.5e-05 Score=59.32 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.0
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159 196 MSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ 238 (307)
Q Consensus 196 ~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~ 238 (307)
..+++|++|+|++|.++.- ....+..+++|++|+++++....
T Consensus 78 ~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCCCccc
Confidence 3577888888888776521 11234567888888887776543
No 144
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.78 E-value=6.1e-05 Score=66.09 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=72.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+++++. ++... ...+..+++|+.|++++|.+.......+ ..+++|+.|+++++ +. ..... ...+++|+
T Consensus 193 ~~L~~L~l~~n~-i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNK-IQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSC-CCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTT-GGGCTTCC
T ss_pred CCCCEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChh-hhcCccCC
Confidence 689999998764 33211 1234578999999999987643222222 45789999999866 22 11111 24789999
Q ss_pred EEEecCCCCCHHHHHHHHH-----cCCCCcEEeccCCcCC
Q 037159 203 VLSLRSSIVDKNALNLILT-----LMGSLEALNISHCLLG 237 (307)
Q Consensus 203 ~L~L~~~~it~~~l~~l~~-----~~~~L~~L~l~~C~~i 237 (307)
+|++++|.++..+...+.. ..+.|+.|+++++...
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999999877543332222 1477999999988754
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.78 E-value=9.3e-05 Score=58.64 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=59.5
Q ss_pred CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCc
Q 037159 149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLE 227 (307)
Q Consensus 149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~ 227 (307)
.++|++|+++++.+.... ......+++|++|++++. +... .......+++|++|++++|.++.-. ...+..+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence 479999999998864211 112245689999999866 2211 1112247899999999999977321 12346789999
Q ss_pred EEeccCCcCCC
Q 037159 228 ALNISHCLLGQ 238 (307)
Q Consensus 228 ~L~l~~C~~i~ 238 (307)
+|+++++....
T Consensus 104 ~L~l~~N~l~~ 114 (177)
T 2o6r_A 104 ELALDTNQLKS 114 (177)
T ss_dssp EEECCSSCCSC
T ss_pred EEECcCCcceE
Confidence 99999986543
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.72 E-value=0.00016 Score=70.61 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCccEEEeccCCCC--CHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcC
Q 037159 97 CKTVKRLIFNYSIYL--KDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANC 174 (307)
Q Consensus 97 ~~~l~~L~l~~~~~~--~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c 174 (307)
...++.|+++.+... .... -.+++|+.|+|+++. ++ .+...+..+++|+.|+|++|.++ .+..-...+
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~-----~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l 292 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANI-----FKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSC 292 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGG-----GGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGG
T ss_pred CCCCcEEECCCCCCCCCChhh-----cCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCC
Confidence 457888888775532 2221 258999999999775 54 34444678999999999999875 222222457
Q ss_pred CCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCH
Q 037159 175 KNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDK 213 (307)
Q Consensus 175 ~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~ 213 (307)
++|+.|+|+++ +. ..... ...+++|++|+|++|.++.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCC
Confidence 99999999876 22 11112 2478999999999999874
No 147
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.70 E-value=0.00092 Score=63.90 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=8.6
Q ss_pred CCCCCEEEecCCCCC
Q 037159 198 IPELKVLSLRSSIVD 212 (307)
Q Consensus 198 ~p~L~~L~L~~~~it 212 (307)
+++|+.|++++|.++
T Consensus 180 ~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 180 PSGLQELSVSDNQLA 194 (622)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CCCCcEEECCCCCCC
Confidence 356666666666544
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.65 E-value=0.00012 Score=57.75 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=25.2
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159 196 MSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237 (307)
Q Consensus 196 ~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i 237 (307)
..+++|++|+|++|.++.-. ...+..+++|++|+|++....
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence 35677777777777755211 123455777778877776543
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.62 E-value=0.00027 Score=56.98 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=60.5
Q ss_pred CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCc
Q 037159 149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLE 227 (307)
Q Consensus 149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~ 227 (307)
.++|++|+++++.++. +......+++|+.|++++. +....... ...+++|++|+|++|.++.-.- ..+.++++|+
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCC
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCCccCEeCH-HHhCCCCCCC
Confidence 3689999999998742 1122356799999999876 22111112 2378999999999998764221 2346789999
Q ss_pred EEeccCCcCCCc
Q 037159 228 ALNISHCLLGQI 239 (307)
Q Consensus 228 ~L~l~~C~~i~~ 239 (307)
+|+++++...+.
T Consensus 106 ~L~L~~N~l~~~ 117 (193)
T 2wfh_A 106 LLSLHGNDISVV 117 (193)
T ss_dssp EEECCSSCCCBC
T ss_pred EEECCCCCCCee
Confidence 999999876553
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.52 E-value=0.00012 Score=58.95 Aligned_cols=87 Identities=8% Similarity=-0.034 Sum_probs=59.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159 150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA 228 (307)
Q Consensus 150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~ 228 (307)
++|++|+++++.++...........++|+.|++++. +.......+ ..+++|++|+|++|.++...- ..+.++++|++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 489999999998643221112345799999999876 221111222 378999999999999774221 22456899999
Q ss_pred EeccCCcCCC
Q 037159 229 LNISHCLLGQ 238 (307)
Q Consensus 229 L~l~~C~~i~ 238 (307)
|+++++...+
T Consensus 107 L~L~~N~l~~ 116 (192)
T 1w8a_A 107 LNLYDNQISC 116 (192)
T ss_dssp EECCSSCCCE
T ss_pred EECCCCcCCe
Confidence 9999987554
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.43 E-value=0.00039 Score=55.09 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=55.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+|+++. ++.- ....+..+++|+.|+|++|.++.-. ..+...+++|+.|++++. +... .......+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKL-EPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-cccc-CHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence 689999998764 3321 1223567899999999998864311 112245689999999765 2211 111224689999
Q ss_pred EEEecCCCCC
Q 037159 203 VLSLRSSIVD 212 (307)
Q Consensus 203 ~L~L~~~~it 212 (307)
+|+|++|.++
T Consensus 109 ~L~L~~N~~~ 118 (174)
T 2r9u_A 109 HIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCBC
T ss_pred EEEeCCCCcc
Confidence 9999999865
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.42 E-value=0.00033 Score=55.20 Aligned_cols=85 Identities=13% Similarity=-0.024 Sum_probs=54.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK 202 (307)
Q Consensus 124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 202 (307)
++|+.|+|+++. ++.- ....+..+++|+.|+|++|.+..-. .......++|+.|++++. +... .......+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKL-EPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCcc-ChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCC
Confidence 678899998664 3321 0123557889999999998764211 112245689999999765 2211 111224789999
Q ss_pred EEEecCCCCC
Q 037159 203 VLSLRSSIVD 212 (307)
Q Consensus 203 ~L~L~~~~it 212 (307)
+|+|++|.++
T Consensus 106 ~L~L~~N~~~ 115 (170)
T 3g39_A 106 HIWLLNNPWD 115 (170)
T ss_dssp EEECCSSCBC
T ss_pred EEEeCCCCCC
Confidence 9999999865
No 153
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.40 E-value=0.00076 Score=61.97 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=17.1
Q ss_pred CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159 200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~ 236 (307)
+|++|++++|.++ .+.. +..+++|++|+++++..
T Consensus 216 ~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 216 SLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCC
T ss_pred cccEEECcCCcCC--cccc-cCCCCCCCEEECCCCcC
Confidence 4555555555443 1211 33456666666666543
No 154
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.30 E-value=0.0012 Score=60.64 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=38.0
Q ss_pred hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159 147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS 225 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~ 225 (307)
..+++|++|++++|.+.. +....++|+.|+++++ +. .+..+ ..+++|++|++++|.++. +. ...++
T Consensus 192 ~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~--~lp~~-~~l~~L~~L~l~~N~l~~--l~---~~~~~ 258 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILE--ELPEL-QNLPFLTTIYADNNLLKT--LP---DLPPS 258 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCS--SCCCC-TTCTTCCEEECCSSCCSS--CC---SCCTT
T ss_pred cCCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCC--ccccc-CCCCCCCEEECCCCcCCc--cc---ccccc
Confidence 445555666655554421 1112245666666544 11 11112 356777777777776553 11 12356
Q ss_pred CcEEeccCCcC
Q 037159 226 LEALNISHCLL 236 (307)
Q Consensus 226 L~~L~l~~C~~ 236 (307)
|+.|++++|..
T Consensus 259 L~~L~l~~N~l 269 (454)
T 1jl5_A 259 LEALNVRDNYL 269 (454)
T ss_dssp CCEEECCSSCC
T ss_pred cCEEECCCCcc
Confidence 66666665543
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.07 E-value=0.00039 Score=60.86 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=8.9
Q ss_pred HHHHHHHhhCCCccEEecCC
Q 037159 114 EHLVYAATRFPMVKHLALPP 133 (307)
Q Consensus 114 ~~l~~i~~~~~~L~~L~L~~ 133 (307)
..+..+...|++|+.|+|++
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHhcCCCeEEECCC
Confidence 33333434445555555543
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.51 E-value=0.0051 Score=53.64 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=6.8
Q ss_pred hCCCccEEecCC
Q 037159 122 RFPMVKHLALPP 133 (307)
Q Consensus 122 ~~~~L~~L~L~~ 133 (307)
.|++|+.|+++.
T Consensus 122 ~~~~L~~l~l~~ 133 (329)
T 3sb4_A 122 GCDNLKICQIRK 133 (329)
T ss_dssp TCTTCCEEEBCC
T ss_pred cCcccceEEcCC
Confidence 356666666653
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.93 E-value=0.0014 Score=57.53 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=47.7
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE 200 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~ 200 (307)
..++|+.|+|++...++.- ....+..+++|+.|+|++|.+....-. ....+++|+.|+|++. +.. ....+...++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~- 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALES-LSWKTVQGLS- 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-
T ss_pred CCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCccce-eCHHHcccCC-
Confidence 3567888888753334321 012345778888888888875332111 1234677888888654 110 0011111233
Q ss_pred CCEEEecCCCCC
Q 037159 201 LKVLSLRSSIVD 212 (307)
Q Consensus 201 L~~L~L~~~~it 212 (307)
|+.|+|.+|.++
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 788888877754
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.58 E-value=0.003 Score=55.41 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=8.6
Q ss_pred cCCCCCEEEecCCCCC
Q 037159 197 SIPELKVLSLRSSIVD 212 (307)
Q Consensus 197 ~~p~L~~L~L~~~~it 212 (307)
.+++|++|+|++|.++
T Consensus 78 ~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCCCEEECCSSCCS
T ss_pred CCcCCCEEeCCCCccc
Confidence 4555555555555543
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=92.48 E-value=0.0014 Score=57.88 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=8.3
Q ss_pred CCCcEEeccCCcCC
Q 037159 224 GSLEALNISHCLLG 237 (307)
Q Consensus 224 ~~L~~L~l~~C~~i 237 (307)
..|+.|+++++..-
T Consensus 154 ~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 154 FESVILWLNKNGIQ 167 (350)
T ss_dssp SSCEEEECCSSCCC
T ss_pred hhhhhhcccccccc
Confidence 35666777665443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.31 E-value=0.12 Score=46.14 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=52.4
Q ss_pred hCCCccEEecCCCCC-CCHHHHHHHHhcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcC
Q 037159 122 RFPMVKHLALPPCNE-ITVDGFRSAIQWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSI 198 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~ 198 (307)
.|.+|+.+.++.... +.. ..+..|+.|+.+.+...- +.+. ....|.+|+++.|...+..-+-.++ ..|
T Consensus 263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF-~~C 333 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDDAF-AGC 333 (394)
T ss_dssp TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTT-TTC
T ss_pred ecccccEEecccccceecC----cccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHhHh-hCC
Confidence 466777777754321 111 123467777777775421 1221 1245777777777544221111111 367
Q ss_pred CCCCEEEecCCC--CCHHHHHHHHHcCCCCcEEeccC
Q 037159 199 PELKVLSLRSSI--VDKNALNLILTLMGSLEALNISH 233 (307)
Q Consensus 199 p~L~~L~L~~~~--it~~~l~~l~~~~~~L~~L~l~~ 233 (307)
.+|+.+.|..+- |.+.+ ..+|++|+.+++.+
T Consensus 334 ~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESA----FSNCTALNNIEYSG 366 (394)
T ss_dssp TTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESS
T ss_pred CCCCEEEECcccCEEhHhH----hhCCCCCCEEEECC
Confidence 778877775432 43332 35677777777754
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=85.23 E-value=0.067 Score=48.06 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=7.9
Q ss_pred cCCCCCEEEecCCC
Q 037159 197 SIPELKVLSLRSSI 210 (307)
Q Consensus 197 ~~p~L~~L~L~~~~ 210 (307)
.|++|+.+.+.++.
T Consensus 269 ~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 269 YCPELAEVTTYGST 282 (401)
T ss_dssp TCTTCCEEEEESSC
T ss_pred CCCCCCEEEeCCcc
Confidence 45566666665543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=80.85 E-value=0.23 Score=44.20 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=59.5
Q ss_pred hhCCCccEEecCCCC-CCCHHHHHHHHhcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhc
Q 037159 121 TRFPMVKHLALPPCN-EITVDGFRSAIQWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMS 197 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~ 197 (307)
..|++|+.+.++..- .+.+ ..+..|.+|++++|...- +.+. ....|.+|+++.|...+..-+-.++ ..
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~~aF-~~ 355 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPESAF-SN 355 (394)
T ss_dssp TTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCGGGG-TT
T ss_pred ccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhHhHh-hC
Confidence 358999999997432 1222 235689999999997541 2222 1257899999999765332112222 48
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEecc
Q 037159 198 IPELKVLSLRSSIVDKNALNLILTLMGSLEALNIS 232 (307)
Q Consensus 198 ~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~ 232 (307)
|++|+.+.+.++... +. -...|.+|+.+.+.
T Consensus 356 C~~L~~i~~~~~~~~---~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQ---WN-AISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEESSCHHH---HH-TCBCCCCC------
T ss_pred CCCCCEEEECCceee---hh-hhhccCCCCEEEeC
Confidence 999999999886421 21 23457788877764
No 163
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=76.93 E-value=0.023 Score=49.88 Aligned_cols=39 Identities=18% Similarity=0.010 Sum_probs=27.3
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159 199 PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI 239 (307)
Q Consensus 199 p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~ 239 (307)
..|+.|+|++|.++. +..-+...++|+.|+++++..++.
T Consensus 154 ~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 154 FESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp SSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCC
T ss_pred hhhhhhccccccccC--CChhhccccchhHHhhccCCcccC
Confidence 468899999998763 211122356899999998877664
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=76.69 E-value=0.2 Score=44.98 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=7.9
Q ss_pred hCCCccEEecCC
Q 037159 122 RFPMVKHLALPP 133 (307)
Q Consensus 122 ~~~~L~~L~L~~ 133 (307)
.|++|+.+.++.
T Consensus 224 ~~~~L~~l~l~~ 235 (401)
T 4fdw_A 224 KTSQLKTIEIPE 235 (401)
T ss_dssp TCTTCCCEECCT
T ss_pred CCCCCCEEecCC
Confidence 466777777754
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=54.35 E-value=0.94 Score=40.13 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=14.8
Q ss_pred hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEee
Q 037159 147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVM 183 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~ 183 (307)
..|+.|+.+......+... ....|.+|+.+.+.
T Consensus 273 ~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLL 305 (394)
T ss_dssp TTCTTCCEEEECSSEECTT----TTTTCTTCCEEEEC
T ss_pred ccccccceeccCceeeccc----cccccccccccccc
Confidence 3455555555543322111 12345555555554
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=51.33 E-value=4.8 Score=29.52 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=14.5
Q ss_pred CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159 200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234 (307)
Q Consensus 200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C 234 (307)
+|++|+|++|.|+.-. ...+..+++|+.|+|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCC
Confidence 4555555555433110 012334455555555543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=50.75 E-value=1.3 Score=38.82 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=61.6
Q ss_pred hhCCCccEEecCCCC-CCCHHHHHHHHhcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHh
Q 037159 121 TRFPMVKHLALPPCN-EITVDGFRSAIQWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFM 196 (307)
Q Consensus 121 ~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~ 196 (307)
..|.+|+.+.++..- .+.+ ..+..|..|+.+.+...- +... ....|++|+.+.+... +..-+..+ ..
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~a-F~ 307 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAKVKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRV-FM 307 (379)
T ss_dssp TTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCCCSEECTT----TTTTCTTCCEEEECCTTCCEECTTT-TT
T ss_pred cCCccceEEEcCCCccEeCc----cccceeehhccccccccceecccc----ccccccccccccccccccceehhhh-hc
Confidence 357889999987532 1112 234578899999986532 1111 2257899999999643 22111112 24
Q ss_pred cCCCCCEEEecCCC--CCHHHHHHHHHcCCCCcEEeccC
Q 037159 197 SIPELKVLSLRSSI--VDKNALNLILTLMGSLEALNISH 233 (307)
Q Consensus 197 ~~p~L~~L~L~~~~--it~~~l~~l~~~~~~L~~L~l~~ 233 (307)
.|++|+.+.|..+- |.+.+ ..+|.+|+.+.+..
T Consensus 308 ~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 308 DCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCT
T ss_pred CCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECC
Confidence 78999999996432 44432 45789999988853
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=44.97 E-value=1.3 Score=39.22 Aligned_cols=98 Identities=8% Similarity=0.055 Sum_probs=60.6
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCC
Q 037159 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIP 199 (307)
Q Consensus 122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p 199 (307)
.|++++.+...... +.+ ..+..|.+|+++.+...- +.+. ....|.+|+++.+...+..-+..++ ..|.
T Consensus 274 ~~~~l~~~~~~~~~-i~~----~~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF-~~c~ 343 (394)
T 4fs7_A 274 NCSGLKKVIYGSVI-VPE----KTFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRSF-RGCT 343 (394)
T ss_dssp TCTTCCEEEECSSE-ECT----TTTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTT-TTCT
T ss_pred cccccceeccCcee-ecc----ccccccccccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHhc-cCCC
Confidence 46777777765432 222 234578899999986541 2222 1356889999998654321111122 3788
Q ss_pred CCCEEEecCCC--CCHHHHHHHHHcCCCCcEEeccC
Q 037159 200 ELKVLSLRSSI--VDKNALNLILTLMGSLEALNISH 233 (307)
Q Consensus 200 ~L~~L~L~~~~--it~~~l~~l~~~~~~L~~L~l~~ 233 (307)
+|+.+.+..+- |.+. ...+|++|+.+++..
T Consensus 344 ~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGAN----AFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTTCCEECTT----TBTTCTTCCEEEEEG
T ss_pred CCCEEEECccccEehHH----HhhCCCCCCEEEECC
Confidence 99999986542 4333 246799999999864
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=34.83 E-value=3 Score=36.40 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=46.4
Q ss_pred hcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC
Q 037159 147 QWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG 224 (307)
Q Consensus 147 ~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~ 224 (307)
..|..|+.+.+..+- +.+ .....|.+|+.+.+...+..-...+ ...|++|+.+.+.++.++.-+- ....+|.
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~i~~i~~~a-F~~c~~L~~i~l~~~~i~~I~~-~aF~~c~ 310 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAKVKTVPYLL-CSGCSNLTKVVMDNSAIETLEP-RVFMDCV 310 (379)
T ss_dssp TTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCCCSEECTTT-TTTCTTCCEEEECCTTCCEECT-TTTTTCT
T ss_pred cCCccceEEEcCCCccEeCc----cccceeehhccccccccceeccccc-cccccccccccccccccceehh-hhhcCCC
Confidence 456777777775431 111 1224577888888765422111111 2478899999998765432110 2346789
Q ss_pred CCcEEecc
Q 037159 225 SLEALNIS 232 (307)
Q Consensus 225 ~L~~L~l~ 232 (307)
+|+.++|.
T Consensus 311 ~L~~i~lp 318 (379)
T 4h09_A 311 KLSSVTLP 318 (379)
T ss_dssp TCCEEECC
T ss_pred CCCEEEcC
Confidence 99999884
No 170
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.23 E-value=32 Score=17.75 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=6.2
Q ss_pred ccccccccccC
Q 037159 296 LWRDDEIRSLA 306 (307)
Q Consensus 296 ~w~~~~~~~~~ 306 (307)
-|.+||-+|.|
T Consensus 24 eweddesdeia 34 (34)
T 2li5_B 24 EWEDDESDEIA 34 (34)
T ss_dssp CSSCTTSGGGC
T ss_pred ccccccccccC
Confidence 36666655543
Done!