BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037161
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
I H WSDEHCLK LKNCYE++ ++GK+IV E +LP P++S +K IDV ML H+P
Sbjct: 267 ICHDWSDEHCLKFLKNCYEAL-PDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNP 325
Query: 62 RGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFYK 99
GK RT+ EF +LA AGF G + C N+++MEF K
Sbjct: 326 GGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
I H WSDEHCLKLLKNCY ++ + GK+IV E +LP P+ S +K D ML ++P
Sbjct: 270 ICHDWSDEHCLKLLKNCYAAL-PDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNP 328
Query: 62 RGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFYK 99
GK RT+ EF LA A+GF G + N++VMEF K
Sbjct: 329 GGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
ILH WSD+HC LLKNCY+++ GK+++V+ +LP PE + +S+ +D+ ML H+P
Sbjct: 268 ILHDWSDQHCATLLKNCYDALPAH-GKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP 326
Query: 62 RGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFYK 99
G+ R + EF LA AGF+G++ N+W +EF K
Sbjct: 327 GGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS 60
++ H WSDE C++ L NC+++++ +GK+I+VE +LPE P S SK S +D M +
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKALSP-NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-T 332
Query: 61 PRGKVRTKHEFINLATAAGFSGIRFQCFVCNSW-VMEFYK 99
G+ RT+ ++ L+ +GFS + C NS VMEFYK
Sbjct: 333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS 60
++ H WSDE C++ L NC+++++ +GK+I+VE +LPE P S SK S +D +
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKALSP-NGKVIIVEFILPEEPNTSEESKLVSTLDNLXFI-T 332
Query: 61 PRGKVRTKHEFINLATAAGFSGIRFQCFVCNSW-VMEFYK 99
G+ RT+ ++ L+ +GFS + C NS V EFYK
Sbjct: 333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 2 ILHAWSDEHCLKLLKNCYESINK--EDGKLIVVEAVLPELPENSATSKANSQIDVFMLTH 59
+LH W+DE LK+LKN E+I+ +DGK+I+++ + E ++ ++ D+ MLT
Sbjct: 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 319
Query: 60 SPRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFY 98
GK RTK E+ L AGFS + ++E Y
Sbjct: 320 F-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 2 ILHAWSDEHCLKLLKNCYESINK--EDGKLIVVEAVLPELPENSATSKANSQIDVFMLTH 59
+LH W+DE LK+LKN E+I+ +DGK+I+++ + E ++ ++ D+ MLT
Sbjct: 259 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 318
Query: 60 SPRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFY 98
GK RTK E+ L AGFS + ++E Y
Sbjct: 319 F-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 2 ILHAWSDEHCLKLLKNCYESINK--EDGKLIVVEAVLPELPENSATSKANSQIDVFMLTH 59
+LH W+DE LK+LKN E+I+ +DGK+I+++ + E ++ ++ D+ MLT
Sbjct: 256 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 315
Query: 60 SPRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFY 98
GK RTK E+ L AGFS + ++E Y
Sbjct: 316 F-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 1 SILHAWSDEHCLKLLKNCYESINKED--GKLIVVEAVLPELPENSATSKANSQIDVFMLT 58
++LH W+D+ C+K+LK C E++ + GK+IV++ V+ E + + ++ ++V +
Sbjct: 259 AVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNVTI-- 316
Query: 59 HSPRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFY 98
GK R + E+ L AGF + F ++E Y
Sbjct: 317 SCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKED--GKLIVVEAVLPELPENSATSKANSQIDVFMLTH 59
ILH W+D+ CL++LK C E++ + GK+ +++ V+ + + + ++ +DV M
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL 314
Query: 60 SPRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFY 98
+ GK R + E+ L AGF + ++E Y
Sbjct: 315 N--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
ILH W DE +++L NC + G+++V++AV+PE + + + + F +
Sbjct: 256 ILHNWGDEDSVRILTNC-RRVXPAHGRVLVIDAVVPEGNDAHQSKEXD-----FXXLAAR 309
Query: 62 RGKVRTKHEFINLATAAGF 80
G+ RT E L TAAG
Sbjct: 310 TGQERTAAELEPLFTAAGL 328
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKED--GKLIVVEAVLPELPENSATSKANSQIDVFMLTH 59
ILH W+D+ CL++LK C E++ + GK+ +++ V+ + + + ++ DV
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACL 314
Query: 60 SPRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVMEFY 98
+ GK R + E+ L AGF + ++E Y
Sbjct: 315 N--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
+L WSDE L +L+ C ++ + G+L+V++ ++ + A ++ +D+ MLT
Sbjct: 257 VLLNWSDEDALTILRGCVRAL-EPGGRLLVLDRA--DVEGDGADRFFSTLLDLRMLTFMG 313
Query: 62 RGKVRTKHEFINLATAAGFS 81
G+VRT+ E ++LA +AG +
Sbjct: 314 -GRVRTRDEVVDLAGSAGLA 332
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
+L WSDE L +L+ C ++ + G+L+V++ ++ + A ++ +D+ LT
Sbjct: 257 VLLNWSDEDALTILRGCVRAL-EPGGRLLVLDRA--DVEGDGADRFFSTLLDLRXLTFXG 313
Query: 62 RGKVRTKHEFINLATAAGFS 81
G+VRT+ E ++LA +AG +
Sbjct: 314 -GRVRTRDEVVDLAGSAGLA 332
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
+LH W+D C LL+ Y + K G ++V+E++L E ++ S + ML +
Sbjct: 253 VLHDWADGKCSHLLERIYHTC-KPGGGILVIESLLDEDRRGPLLTQLYS---LNMLVQT- 307
Query: 62 RGKVRTKHEFINLATAAGFSGIRFQ 86
G+ RT + L ++AGF +F+
Sbjct: 308 EGQERTPTHYHMLLSSAGFRDFQFK 332
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS 60
++LH W D + +L+ C E+ G ++V+EAV + A + +D+ MLT+
Sbjct: 243 AVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAV-------AGDEHAGTGMDLRMLTYF 294
Query: 61 PRGKVRTKHEFINLATAAGFS 81
GK R+ E LA AG +
Sbjct: 295 G-GKERSLAELGELAAQAGLA 314
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSP 61
+L W D +++L C E++ + G++++ E +L ENS + +++D+ ML
Sbjct: 258 VLLNWPDHDAVRILTRCAEAL-EPGGRILIHER--DDLHENSFNEQF-TELDLRMLVFLG 313
Query: 62 RGKVRTKHEFINLATAAGF 80
G +RT+ ++ LA +AG
Sbjct: 314 -GALRTREKWDGLAASAGL 331
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 30 IVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLA 75
I V A+ P + T K + QI ++++ P G++ T E NLA
Sbjct: 216 ITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLA 261
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENS 43
+LH W D+ +++L+ + K D +L+V++ ++ E P S
Sbjct: 277 VLHDWDDDDVVRILRRI-ATAXKPDSRLLVIDNLIDERPAAS 317
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQ-----------IDVFM 56
DE LLK Y + D KLI + ++L ++ + SK + Q + V
Sbjct: 119 DEARYNLLKGFYTA---PDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTK 175
Query: 57 L-THSPRGKVRTKHEFINLATAAGFSGIRF---QCFVCNSWVMEFY 98
L + +P R HE+ NL+T+ G S + F+ N W + Y
Sbjct: 176 LKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTY 221
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQ-----------IDVFM 56
DE LLK Y + D KLI + ++L ++ + SK + Q + V
Sbjct: 119 DEARYNLLKGFYTA---PDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTK 175
Query: 57 L-THSPRGKVRTKHEFINLATAAGFSGIRF---QCFVCNSWVMEFY 98
L + +P R HE+ NL+T+ G S + F+ N W + Y
Sbjct: 176 LKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTY 221
>pdb|3M1C|A Chain A, Crystal Structure Of The Conserved Herpesvirus Fusion
Regulator Complex Gh-Gl
Length = 762
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 34 AVLPELPENSATSKANSQIDVFM-LTHSPRGKVRTKHE-FINLATAAGFSGIRF 85
A LPELPE TS+ +++ L+H+P + ++ A A G+ F
Sbjct: 74 ASLPELPEAGPTSRPPAEVTQLKGLSHNPGASALLRSRAWVTFAAAPDREGLTF 127
>pdb|2QIY|A Chain A, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
pdb|2QIY|B Chain B, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
Length = 154
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGK 64
C L+N YE + + KL A EL + SK+ ++ D + T G+
Sbjct: 15 CFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGR 68
>pdb|1ZX2|A Chain A, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
pdb|1ZX2|B Chain B, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
Length = 147
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGK 64
C L+N YE + + KL A EL + SK+ ++ D + T G+
Sbjct: 10 CFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGR 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,853,464
Number of Sequences: 62578
Number of extensions: 89317
Number of successful extensions: 306
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 27
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)