Query 037161
Match_columns 99
No_of_seqs 171 out of 1066
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 2.8E-25 6.1E-30 154.6 7.9 98 1-99 244-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 5E-22 1.1E-26 133.5 5.6 74 1-76 166-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.6 2.1E-14 4.6E-19 99.6 8.0 82 1-86 223-305 (306)
4 PF05891 Methyltransf_PK: AdoM 99.0 1.2E-09 2.5E-14 72.8 5.8 72 1-87 130-201 (218)
5 TIGR00740 methyltransferase, p 98.8 2.2E-09 4.7E-14 72.2 2.2 79 2-86 131-226 (239)
6 PRK00216 ubiE ubiquinone/menaq 98.7 2.9E-07 6.2E-12 61.1 8.8 92 2-99 130-238 (239)
7 PTZ00098 phosphoethanolamine N 98.6 4.8E-07 1E-11 61.9 8.7 79 2-89 126-204 (263)
8 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 6.8E-07 1.5E-11 58.7 8.8 89 2-99 115-223 (223)
9 PLN02232 ubiquinone biosynthes 98.6 2.1E-07 4.5E-12 59.3 6.0 94 2-98 53-159 (160)
10 PLN02233 ubiquinone biosynthes 98.5 6.5E-07 1.4E-11 61.2 8.2 91 2-97 154-259 (261)
11 PRK11873 arsM arsenite S-adeno 98.5 9.4E-07 2E-11 60.4 8.3 76 2-87 155-230 (272)
12 PLN02490 MPBQ/MSBQ methyltrans 98.5 1E-06 2.2E-11 62.5 8.3 72 2-89 187-258 (340)
13 TIGR02752 MenG_heptapren 2-hep 98.4 2.2E-06 4.8E-11 57.1 8.0 92 2-99 123-231 (231)
14 PF13489 Methyltransf_23: Meth 98.4 1.3E-06 2.9E-11 54.5 5.9 75 1-84 86-160 (161)
15 PF06080 DUF938: Protein of un 98.3 6.3E-06 1.4E-10 54.7 8.7 95 1-99 110-204 (204)
16 PF01209 Ubie_methyltran: ubiE 98.3 4.9E-07 1.1E-11 61.1 2.2 92 2-99 125-233 (233)
17 PRK15068 tRNA mo(5)U34 methylt 98.2 1.4E-05 3.1E-10 56.3 8.8 78 2-88 198-275 (322)
18 TIGR00452 methyltransferase, p 98.2 1.3E-05 2.9E-10 56.4 8.1 78 2-88 197-274 (314)
19 PLN02244 tocopherol O-methyltr 98.2 2.2E-05 4.7E-10 55.6 9.0 84 2-89 195-280 (340)
20 PLN02336 phosphoethanolamine N 98.2 1.1E-05 2.5E-10 59.1 7.6 75 2-88 341-415 (475)
21 PRK15451 tRNA cmo(5)U34 methyl 98.2 9.6E-06 2.1E-10 54.9 6.7 82 2-85 134-228 (247)
22 COG2226 UbiE Methylase involve 98.0 6.5E-05 1.4E-09 51.0 9.0 91 2-98 128-236 (238)
23 PRK04266 fibrillarin; Provisio 97.9 6.5E-05 1.4E-09 50.6 7.4 67 2-90 145-213 (226)
24 smart00828 PKS_MT Methyltransf 97.8 0.00012 2.7E-09 48.5 7.1 71 2-89 76-146 (224)
25 PRK08317 hypothetical protein; 97.8 0.00015 3.4E-09 47.8 7.4 81 2-88 96-177 (241)
26 TIGR03438 probable methyltrans 97.8 0.00017 3.7E-09 50.3 7.3 29 2-31 147-175 (301)
27 PLN02336 phosphoethanolamine N 97.7 0.0001 2.2E-09 54.2 6.2 69 2-85 112-180 (475)
28 PLN02396 hexaprenyldihydroxybe 97.7 9E-05 1.9E-09 52.4 5.3 81 2-88 207-290 (322)
29 PRK11036 putative S-adenosyl-L 97.7 6.2E-05 1.3E-09 51.1 4.3 85 2-90 121-210 (255)
30 PRK14103 trans-aconitate 2-met 97.5 0.00037 8.1E-09 47.3 6.4 78 2-85 98-182 (255)
31 PF02353 CMAS: Mycolic acid cy 97.4 0.0002 4.4E-09 49.5 4.2 83 3-89 137-219 (273)
32 PRK11207 tellurite resistance 97.4 0.0014 3E-08 43.0 7.8 66 2-86 104-169 (197)
33 KOG1540 Ubiquinone biosynthesi 97.3 0.00071 1.5E-08 46.6 5.5 78 3-84 187-278 (296)
34 PF04672 Methyltransf_19: S-ad 97.3 0.00032 7E-09 48.4 3.9 74 2-84 159-233 (267)
35 PRK05134 bifunctional 3-demeth 97.3 0.001 2.3E-08 44.3 5.9 79 2-87 123-205 (233)
36 TIGR00477 tehB tellurite resis 97.2 0.003 6.5E-08 41.4 7.7 66 2-86 103-168 (195)
37 TIGR01983 UbiG ubiquinone bios 97.1 0.0013 2.8E-08 43.5 5.2 78 2-88 121-204 (224)
38 COG2230 Cfa Cyclopropane fatty 97.1 0.0021 4.6E-08 44.7 5.8 79 3-89 147-225 (283)
39 KOG2361 Predicted methyltransf 97.0 0.002 4.3E-08 44.0 5.1 81 2-85 153-235 (264)
40 PRK07580 Mg-protoporphyrin IX 96.9 0.0047 1E-07 40.9 6.1 77 2-90 136-217 (230)
41 PLN02585 magnesium protoporphy 96.8 0.0044 9.5E-08 43.8 5.7 78 2-89 221-301 (315)
42 KOG4300 Predicted methyltransf 96.7 0.01 2.3E-07 39.9 6.7 78 8-90 158-235 (252)
43 TIGR00537 hemK_rel_arch HemK-r 96.7 0.023 4.9E-07 36.5 8.2 59 11-99 119-177 (179)
44 PRK06202 hypothetical protein; 96.7 0.0072 1.6E-07 40.4 6.0 76 2-88 138-223 (232)
45 smart00138 MeTrc Methyltransfe 96.6 0.0023 5E-08 43.9 3.4 33 1-34 211-243 (264)
46 PRK06922 hypothetical protein; 96.6 0.0026 5.5E-08 48.9 3.7 32 7-39 512-543 (677)
47 PF12147 Methyltransf_20: Puta 96.5 0.024 5.1E-07 39.9 7.8 84 5-99 221-311 (311)
48 PRK11705 cyclopropane fatty ac 96.5 0.016 3.4E-07 42.0 6.9 78 2-89 237-314 (383)
49 TIGR02021 BchM-ChlM magnesium 96.4 0.016 3.4E-07 38.4 6.0 79 2-89 128-208 (219)
50 PRK12335 tellurite resistance 96.3 0.027 5.8E-07 39.0 7.0 66 2-86 193-258 (287)
51 PTZ00146 fibrillarin; Provisio 96.1 0.047 1E-06 38.3 7.4 75 2-97 206-284 (293)
52 PF13847 Methyltransf_31: Meth 95.9 0.0032 6.9E-08 39.4 0.9 70 2-79 82-152 (152)
53 PRK10611 chemotaxis methyltran 95.8 0.011 2.5E-07 41.2 3.4 32 1-33 231-262 (287)
54 PRK00517 prmA ribosomal protei 95.8 0.13 2.9E-06 34.9 8.4 58 8-95 189-246 (250)
55 PF08003 Methyltransf_9: Prote 95.7 0.062 1.4E-06 38.0 6.8 69 11-88 198-268 (315)
56 PLN03075 nicotianamine synthas 95.7 0.012 2.5E-07 41.4 3.0 30 2-32 203-232 (296)
57 PF06859 Bin3: Bicoid-interact 95.6 0.0045 9.8E-08 37.3 0.5 75 5-88 17-93 (110)
58 PF05219 DREV: DREV methyltran 95.5 0.048 1E-06 37.7 5.5 70 11-89 167-242 (265)
59 PRK05785 hypothetical protein; 95.4 0.14 3.1E-06 34.3 7.4 92 2-99 119-224 (226)
60 TIGR02072 BioC biotin biosynth 95.3 0.072 1.6E-06 35.0 5.7 69 2-86 107-175 (240)
61 PF12847 Methyltransf_18: Meth 95.1 0.028 6.1E-07 32.8 3.0 24 9-33 88-111 (112)
62 COG4798 Predicted methyltransf 95.0 0.11 2.5E-06 34.7 5.7 64 8-87 142-205 (238)
63 PRK14968 putative methyltransf 94.9 0.41 8.8E-06 30.4 8.3 59 11-99 127-188 (188)
64 PF01739 CheR: CheR methyltran 94.7 0.023 4.9E-07 37.6 2.0 32 1-33 144-175 (196)
65 PRK01683 trans-aconitate 2-met 94.5 0.18 3.9E-06 34.1 6.0 75 2-82 102-182 (258)
66 COG2227 UbiG 2-polyprenyl-3-me 94.2 0.045 9.8E-07 37.4 2.5 78 2-88 133-216 (243)
67 PF11968 DUF3321: Putative met 94.2 0.32 7E-06 32.8 6.5 59 8-89 120-183 (219)
68 PF05148 Methyltransf_8: Hypot 94.0 0.17 3.7E-06 34.1 5.0 61 11-99 137-197 (219)
69 TIGR03439 methyl_EasF probable 93.8 0.11 2.4E-06 36.9 4.0 33 2-35 166-200 (319)
70 PRK08287 cobalt-precorrin-6Y C 93.7 0.37 8E-06 31.0 6.1 47 11-87 110-156 (187)
71 PRK10258 biotin biosynthesis p 93.6 0.33 7.2E-06 32.6 6.0 64 11-82 119-182 (251)
72 TIGR03534 RF_mod_PrmC protein- 93.6 0.29 6.2E-06 32.7 5.6 46 12-88 197-242 (251)
73 PF05401 NodS: Nodulation prot 93.4 0.083 1.8E-06 35.1 2.7 32 2-34 115-147 (201)
74 KOG2899 Predicted methyltransf 93.0 0.14 3.1E-06 35.3 3.4 70 2-80 179-248 (288)
75 TIGR02469 CbiT precorrin-6Y C5 92.9 0.17 3.7E-06 29.8 3.4 28 4-32 94-121 (124)
76 TIGR03840 TMPT_Se_Te thiopurin 91.9 0.51 1.1E-05 31.5 5.0 65 2-86 122-186 (213)
77 TIGR00027 mthyl_TIGR00027 meth 91.8 1.4 3E-05 30.3 7.1 77 2-85 167-248 (260)
78 COG1352 CheR Methylase of chem 91.0 0.35 7.5E-06 33.6 3.5 32 1-33 210-241 (268)
79 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.0 0.33 7.1E-06 33.5 3.4 65 8-87 175-239 (256)
80 PRK13255 thiopurine S-methyltr 90.8 0.68 1.5E-05 31.0 4.7 65 2-87 125-190 (218)
81 PRK15001 SAM-dependent 23S rib 90.5 0.51 1.1E-05 34.3 4.1 29 4-33 312-340 (378)
82 PRK09328 N5-glutamine S-adenos 90.4 2.9 6.2E-05 28.3 7.6 57 11-98 217-274 (275)
83 KOG3045 Predicted RNA methylas 89.9 2.1 4.5E-05 30.1 6.5 61 11-99 243-303 (325)
84 COG4627 Uncharacterized protei 89.5 0.35 7.6E-06 31.3 2.4 31 1-32 55-85 (185)
85 PF10017 Methyltransf_33: Hist 88.7 1.1 2.5E-05 27.4 4.2 33 62-94 92-125 (127)
86 PF07109 Mg-por_mtran_C: Magne 88.0 3.9 8.4E-05 24.2 6.0 87 2-99 4-97 (97)
87 PF05724 TPMT: Thiopurine S-me 88.0 1.5 3.2E-05 29.4 4.7 64 2-87 125-190 (218)
88 cd02440 AdoMet_MTases S-adenos 87.2 1.4 3.1E-05 24.0 3.8 24 8-32 80-103 (107)
89 PRK13256 thiopurine S-methyltr 87.1 2.2 4.8E-05 28.9 5.1 35 2-37 133-167 (226)
90 PF03291 Pox_MCEL: mRNA cappin 86.8 0.49 1.1E-05 33.7 2.0 81 7-88 161-268 (331)
91 PF11899 DUF3419: Protein of u 86.4 1.1 2.4E-05 32.7 3.6 32 5-37 306-338 (380)
92 PRK14967 putative methyltransf 86.2 7.1 0.00015 25.9 7.2 24 11-35 138-161 (223)
93 PRK09489 rsmC 16S ribosomal RN 84.9 1.7 3.6E-05 31.2 3.9 27 7-34 278-304 (342)
94 TIGR03587 Pse_Me-ase pseudamin 84.7 2.3 5E-05 28.1 4.3 35 1-38 113-147 (204)
95 COG3315 O-Methyltransferase in 84.4 4.2 9E-05 28.7 5.7 81 2-86 179-263 (297)
96 TIGR02081 metW methionine bios 83.6 2.1 4.5E-05 27.7 3.7 27 62-88 142-168 (194)
97 PF03848 TehB: Tellurite resis 83.5 1.3 2.7E-05 29.4 2.6 33 2-35 103-135 (192)
98 PRK00377 cbiT cobalt-precorrin 82.8 1.8 3.8E-05 28.2 3.1 24 7-31 120-143 (198)
99 KOG1975 mRNA cap methyltransfe 82.7 1.7 3.8E-05 31.4 3.2 23 7-30 212-234 (389)
100 TIGR00438 rrmJ cell division p 82.4 2.1 4.5E-05 27.6 3.4 21 11-32 125-145 (188)
101 KOG2918 Carboxymethyl transfer 81.7 4.7 0.0001 28.9 5.0 82 2-88 197-278 (335)
102 PRK11188 rrmJ 23S rRNA methylt 81.1 2.8 6E-05 27.8 3.6 22 12-34 145-166 (209)
103 PRK00121 trmB tRNA (guanine-N( 80.7 1.8 3.8E-05 28.4 2.6 22 11-33 135-156 (202)
104 PF07942 N2227: N2227-like pro 80.2 17 0.00036 25.4 7.3 63 9-87 179-242 (270)
105 PRK07402 precorrin-6B methylas 79.8 2.2 4.9E-05 27.6 2.8 24 10-34 120-143 (196)
106 TIGR00006 S-adenosyl-methyltra 79.7 3 6.6E-05 29.5 3.6 27 10-37 218-244 (305)
107 KOG3987 Uncharacterized conser 78.1 4.1 8.9E-05 27.8 3.6 74 11-89 185-262 (288)
108 PRK00107 gidB 16S rRNA methylt 77.2 3.4 7.3E-05 27.0 3.0 22 11-33 124-145 (187)
109 PRK00050 16S rRNA m(4)C1402 me 76.9 4.1 9E-05 28.7 3.6 30 9-39 213-242 (296)
110 COG4301 Uncharacterized conser 76.4 4.6 0.0001 28.3 3.6 35 2-37 163-198 (321)
111 KOG1270 Methyltransferases [Co 76.3 2.1 4.5E-05 30.0 1.9 71 11-87 174-249 (282)
112 TIGR03439 methyl_EasF probable 76.0 3.4 7.4E-05 29.4 3.0 29 61-89 283-311 (319)
113 TIGR00091 tRNA (guanine-N(7)-) 75.5 3.8 8.2E-05 26.6 3.0 21 12-33 112-132 (194)
114 PRK08558 adenine phosphoribosy 74.5 5 0.00011 27.3 3.4 59 20-88 171-237 (238)
115 TIGR00446 nop2p NOL1/NOP2/sun 74.4 6.8 0.00015 26.8 4.1 25 12-37 179-203 (264)
116 PF08845 SymE_toxin: Toxin Sym 72.9 1.8 3.9E-05 23.0 0.8 14 73-86 31-44 (57)
117 TIGR00406 prmA ribosomal prote 72.9 7.3 0.00016 27.0 4.0 24 10-34 237-260 (288)
118 COG0275 Predicted S-adenosylme 72.8 7.3 0.00016 27.8 3.9 28 9-37 221-248 (314)
119 PRK11933 yebU rRNA (cytosine-C 72.8 5 0.00011 30.1 3.3 27 5-32 208-241 (470)
120 PF05430 Methyltransf_30: S-ad 72.3 10 0.00022 23.2 4.1 31 69-99 93-123 (124)
121 PF01795 Methyltransf_5: MraW 72.2 3.2 6.9E-05 29.5 2.1 26 9-35 218-243 (310)
122 PF05175 MTS: Methyltransferas 71.6 4.8 0.0001 25.6 2.7 24 9-33 117-140 (170)
123 PRK14904 16S rRNA methyltransf 71.5 7.2 0.00016 28.8 3.9 25 12-37 357-381 (445)
124 TIGR00563 rsmB ribosomal RNA s 71.3 5.2 0.00011 29.3 3.1 27 11-38 347-373 (426)
125 COG4353 Uncharacterized conser 70.7 21 0.00045 23.3 5.3 63 9-89 70-132 (192)
126 PRK04457 spermidine synthase; 70.4 5.5 0.00012 27.4 2.9 20 12-32 157-176 (262)
127 PRK14901 16S rRNA methyltransf 69.9 5.7 0.00012 29.2 3.1 25 12-37 364-388 (434)
128 KOG1331 Predicted methyltransf 69.8 6.2 0.00013 27.9 3.0 32 2-34 112-144 (293)
129 PF12419 DUF3670: SNF2 Helicas 69.5 20 0.00044 22.3 5.1 78 5-85 10-102 (141)
130 COG2242 CobL Precorrin-6B meth 69.3 5.8 0.00013 26.2 2.7 24 10-34 113-136 (187)
131 PF07927 YcfA: YcfA-like prote 69.0 5.3 0.00011 20.5 2.1 17 69-85 2-18 (56)
132 TIGR00138 gidB 16S rRNA methyl 68.5 6.9 0.00015 25.3 2.9 21 11-32 121-141 (181)
133 cd01093 CRIB_PAK_like PAK (p21 68.5 3.3 7.1E-05 20.9 1.1 21 64-84 24-44 (46)
134 PF13659 Methyltransf_26: Meth 67.7 4 8.6E-05 23.7 1.6 22 10-32 93-114 (117)
135 COG2813 RsmC 16S RNA G1207 met 67.4 9.1 0.0002 27.2 3.5 27 7-34 241-267 (300)
136 PRK01581 speE spermidine synth 66.7 6.1 0.00013 28.9 2.6 20 12-32 248-267 (374)
137 PF05772 NinB: NinB protein; 65.7 19 0.00041 22.3 4.3 27 51-78 47-73 (127)
138 PRK03612 spermidine synthase; 65.3 6 0.00013 29.9 2.5 30 2-32 377-414 (521)
139 PF11312 DUF3115: Protein of u 65.2 10 0.00022 27.1 3.4 26 8-34 218-243 (315)
140 COG4106 Tam Trans-aconitate me 65.0 43 0.00094 23.1 7.0 81 11-99 108-203 (257)
141 TIGR02764 spore_ybaN_pdaB poly 64.9 7.2 0.00016 25.1 2.5 29 4-33 131-159 (191)
142 PLN02366 spermidine synthase 64.6 7.7 0.00017 27.4 2.8 20 11-31 185-204 (308)
143 COG0503 Apt Adenine/guanine ph 64.3 25 0.00055 22.8 4.9 21 68-88 132-152 (179)
144 KOG2198 tRNA cytosine-5-methyl 64.2 7.3 0.00016 28.5 2.6 28 11-39 275-302 (375)
145 PF08002 DUF1697: Protein of u 64.2 10 0.00022 23.5 3.0 33 62-95 14-47 (137)
146 PF13578 Methyltransf_24: Meth 63.6 5.9 0.00013 22.8 1.8 25 8-33 81-105 (106)
147 PRK00811 spermidine synthase; 62.6 10 0.00022 26.3 3.1 20 11-31 170-189 (283)
148 PF13592 HTH_33: Winged helix- 62.2 7.6 0.00017 20.4 1.9 27 62-88 18-44 (60)
149 PRK11805 N5-glutamine S-adenos 61.5 12 0.00027 26.3 3.3 21 10-31 241-261 (307)
150 TIGR01177 conserved hypothetic 61.5 15 0.00032 26.0 3.8 22 10-32 272-293 (329)
151 PRK11088 rrmA 23S rRNA methylt 61.1 9.3 0.0002 26.1 2.6 19 14-33 163-181 (272)
152 TIGR03533 L3_gln_methyl protei 60.5 13 0.00029 25.7 3.3 20 11-31 230-249 (284)
153 PF08468 MTS_N: Methyltransfer 60.5 16 0.00035 23.2 3.4 26 8-34 81-106 (155)
154 PRK10901 16S rRNA methyltransf 60.0 15 0.00033 27.0 3.7 25 12-37 352-376 (427)
155 PF12780 AAA_8: P-loop contain 59.4 15 0.00033 25.5 3.4 73 9-86 14-92 (268)
156 TIGR03707 PPK2_P_aer polyphosp 58.3 16 0.00034 24.9 3.3 71 8-86 71-141 (230)
157 PRK14902 16S rRNA methyltransf 57.6 17 0.00037 26.8 3.6 24 12-36 359-382 (444)
158 PF06968 BATS: Biotin and Thia 57.5 22 0.00048 20.4 3.4 75 5-81 18-92 (93)
159 PF01555 N6_N4_Mtase: DNA meth 57.4 9.5 0.00021 24.6 2.1 22 10-32 34-55 (231)
160 KOG2798 Putative trehalase [Ca 56.7 75 0.0016 23.2 6.5 67 9-89 273-339 (369)
161 PRK14903 16S rRNA methyltransf 56.7 15 0.00032 27.2 3.1 25 12-37 346-370 (431)
162 PF10087 DUF2325: Uncharacteri 56.2 16 0.00035 21.0 2.7 24 62-85 6-29 (97)
163 PF09382 RQC: RQC domain; Int 56.1 6.7 0.00015 22.7 1.1 63 9-78 4-66 (106)
164 PRK09219 xanthine phosphoribos 55.7 13 0.00028 24.5 2.5 60 20-89 112-179 (189)
165 TIGR02873 spore_ylxY probable 55.7 11 0.00024 26.1 2.2 29 4-33 210-238 (268)
166 COG5459 Predicted rRNA methyla 55.7 19 0.00042 26.6 3.5 35 2-37 195-229 (484)
167 COG4122 Predicted O-methyltran 55.6 21 0.00046 24.1 3.5 35 3-39 137-171 (219)
168 PF02636 Methyltransf_28: Puta 55.2 21 0.00046 24.1 3.6 27 10-37 172-198 (252)
169 TIGR00417 speE spermidine synt 55.1 15 0.00032 25.2 2.8 21 11-32 165-185 (270)
170 TIGR03709 PPK2_rel_1 polyphosp 54.7 22 0.00048 24.7 3.6 70 9-86 97-166 (264)
171 COG2326 Uncharacterized conser 54.6 15 0.00032 25.7 2.6 70 9-86 115-184 (270)
172 COG2519 GCD14 tRNA(1-methylade 54.5 21 0.00046 24.8 3.4 31 4-37 169-199 (256)
173 PRK11524 putative methyltransf 53.9 19 0.00042 24.9 3.3 20 12-32 60-79 (284)
174 PF01870 Hjc: Archaeal hollida 53.3 13 0.00028 21.5 1.9 20 67-86 2-21 (88)
175 PF00543 P-II: Nitrogen regula 53.1 19 0.00041 20.9 2.7 28 7-34 63-93 (102)
176 COG0500 SmtA SAM-dependent met 52.3 32 0.0007 19.4 3.7 27 11-38 134-160 (257)
177 PRK14121 tRNA (guanine-N(7)-)- 52.2 18 0.00038 26.7 2.9 71 12-86 215-285 (390)
178 PRK06852 aldolase; Validated 52.1 16 0.00035 26.0 2.6 30 3-33 8-37 (304)
179 KOG3010 Methyltransferase [Gen 51.7 18 0.00038 25.2 2.7 24 11-34 115-138 (261)
180 PRK13605 endoribonuclease SymE 51.6 7.7 0.00017 23.5 0.8 15 72-86 44-58 (113)
181 PF06557 DUF1122: Protein of u 51.5 16 0.00035 23.7 2.3 64 8-89 62-125 (170)
182 PRK13942 protein-L-isoaspartat 51.3 13 0.00028 24.5 2.0 20 12-32 156-175 (212)
183 COG4301 Uncharacterized conser 50.9 13 0.00027 26.2 1.9 38 60-97 281-319 (321)
184 smart00874 B5 tRNA synthetase 50.3 22 0.00049 18.9 2.6 22 62-83 15-36 (71)
185 TIGR03704 PrmC_rel_meth putati 49.6 30 0.00065 23.5 3.6 21 11-32 195-215 (251)
186 PF06962 rRNA_methylase: Putat 48.7 17 0.00037 22.9 2.1 25 9-34 69-93 (140)
187 PF08952 DUF1866: Domain of un 48.6 9.1 0.0002 24.3 0.9 26 7-32 8-33 (146)
188 PRK10858 nitrogen regulatory p 48.2 45 0.00098 20.0 3.8 27 7-34 66-96 (112)
189 PF03059 NAS: Nicotianamine sy 48.2 20 0.00042 25.2 2.5 24 8-32 206-229 (276)
190 COG0144 Sun tRNA and rRNA cyto 47.8 20 0.00044 25.8 2.7 25 12-37 268-292 (355)
191 TIGR00536 hemK_fam HemK family 47.7 29 0.00063 23.9 3.3 23 10-34 222-244 (284)
192 COG4822 CbiK Cobalamin biosynt 47.7 24 0.00053 24.2 2.8 21 66-86 216-236 (265)
193 TIGR00080 pimt protein-L-isoas 47.5 15 0.00032 24.1 1.8 21 11-32 156-176 (215)
194 PRK13699 putative methylase; P 47.4 37 0.00079 22.9 3.7 22 9-31 49-70 (227)
195 PRK13944 protein-L-isoaspartat 47.4 19 0.00042 23.5 2.3 19 13-32 154-172 (205)
196 PRK10556 hypothetical protein; 47.0 27 0.0006 20.7 2.6 20 68-87 5-24 (111)
197 PF02479 Herpes_IE68: Herpesvi 46.8 24 0.00052 22.0 2.5 29 49-79 62-90 (132)
198 PF03484 B5: tRNA synthetase B 46.7 23 0.00051 19.1 2.3 23 63-85 16-38 (70)
199 PRK00312 pcm protein-L-isoaspa 46.3 20 0.00043 23.4 2.3 22 11-33 154-175 (212)
200 PF03698 UPF0180: Uncharacteri 46.0 21 0.00046 20.3 2.0 26 63-88 5-30 (80)
201 TIGR01744 XPRTase xanthine pho 45.4 25 0.00054 23.1 2.6 60 20-89 112-179 (191)
202 PRK15450 signal transduction p 45.4 16 0.00034 20.9 1.4 18 62-79 68-85 (85)
203 PF01206 TusA: Sulfurtransfera 44.8 37 0.00081 18.0 2.9 27 68-94 40-66 (70)
204 COG4421 Capsular polysaccharid 44.7 22 0.00047 25.9 2.3 23 66-88 241-263 (368)
205 PRK09489 rsmC 16S ribosomal RN 44.7 42 0.00091 24.1 3.8 26 9-35 89-114 (342)
206 PLN02781 Probable caffeoyl-CoA 43.9 48 0.001 22.3 3.9 29 7-37 153-181 (234)
207 PF03269 DUF268: Caenorhabditi 43.7 31 0.00067 22.6 2.7 25 12-37 91-115 (177)
208 cd03413 CbiK_C Anaerobic cobal 43.2 29 0.00062 20.4 2.4 18 68-85 81-98 (103)
209 PF08373 RAP: RAP domain; Int 43.2 24 0.00052 18.0 1.9 15 72-86 24-38 (58)
210 COG1724 Predicted RNA binding 42.6 40 0.00087 18.5 2.7 21 66-86 7-27 (66)
211 COG5443 FlbT Flagellar biosynt 41.9 27 0.00059 21.9 2.2 55 21-76 8-83 (148)
212 COG4808 Uncharacterized protei 41.6 26 0.00056 22.2 2.1 22 62-83 130-151 (152)
213 PHA00457 inhibitor of host bac 40.6 35 0.00077 18.3 2.2 14 75-88 47-60 (63)
214 cd04276 ZnMc_MMP_like_2 Zinc-d 40.3 37 0.0008 22.5 2.8 23 65-87 27-49 (197)
215 KOG0061 Transporter, ABC super 40.3 1.6E+02 0.0035 23.0 6.6 61 9-83 207-270 (613)
216 KOG0902 Phosphatidylinositol 4 40.2 39 0.00084 29.4 3.4 29 71-99 1569-1601(1803)
217 PRK10665 nitrogen regulatory p 40.0 72 0.0016 19.1 3.8 27 7-34 66-96 (112)
218 CHL00123 rps6 ribosomal protei 39.7 77 0.0017 18.4 3.9 31 5-35 17-47 (97)
219 PF12646 DUF3783: Domain of un 39.6 40 0.00086 17.6 2.4 20 2-21 5-24 (58)
220 COG3053 CitC Citrate lyase syn 38.5 55 0.0012 23.6 3.5 33 62-96 92-124 (352)
221 PF13137 DUF3983: Protein of u 38.5 16 0.00034 17.3 0.6 16 64-79 18-33 (34)
222 PF09400 DUF2002: Protein of u 38.5 35 0.00077 20.5 2.2 20 68-87 5-24 (111)
223 PF11455 DUF3018: Protein of 38.4 47 0.001 18.1 2.6 19 68-86 5-23 (65)
224 TIGR03708 poly_P_AMP_trns poly 38.1 48 0.001 25.3 3.4 70 9-86 81-150 (493)
225 PF06200 tify: tify domain; I 38.0 30 0.00064 16.6 1.6 16 2-17 18-33 (36)
226 PF03793 PASTA: PASTA domain; 38.0 58 0.0013 16.7 2.9 21 66-86 9-29 (63)
227 PF14117 DUF4287: Domain of un 37.9 36 0.00078 18.3 2.0 16 64-79 13-28 (61)
228 PF07862 Nif11: Nitrogen fixat 37.4 43 0.00094 16.6 2.3 19 65-83 26-44 (49)
229 PRK09662 GspL-like protein; Pr 37.0 31 0.00068 24.3 2.2 20 69-88 8-27 (286)
230 PF01316 Arg_repressor: Argini 36.6 28 0.0006 19.2 1.5 23 62-84 16-38 (70)
231 PRK02220 4-oxalocrotonate taut 36.2 64 0.0014 16.4 3.5 35 3-37 9-48 (61)
232 COG2453 CDC14 Predicted protei 36.2 69 0.0015 20.6 3.6 27 6-33 86-112 (180)
233 TIGR03708 poly_P_AMP_trns poly 35.5 66 0.0014 24.6 3.8 70 9-86 340-409 (493)
234 KOG3451 Uncharacterized conser 35.4 38 0.00083 18.7 1.9 26 8-34 13-38 (71)
235 PRK04280 arginine repressor; P 35.3 40 0.00087 21.3 2.3 23 62-84 15-37 (148)
236 PF00786 PBD: P21-Rho-binding 35.2 32 0.0007 18.0 1.6 21 64-84 23-43 (59)
237 cd05167 PI4Kc_III_alpha Phosph 34.9 1E+02 0.0022 22.0 4.5 31 69-99 75-109 (311)
238 PF06258 Mito_fiss_Elm1: Mitoc 34.9 57 0.0012 23.1 3.2 29 4-32 160-188 (311)
239 smart00876 BATS Biotin and Thi 34.8 92 0.002 17.8 3.7 25 6-32 20-44 (94)
240 PF09827 CRISPR_Cas2: CRISPR a 34.7 81 0.0017 17.1 4.3 28 7-35 40-68 (78)
241 COG4976 Predicted methyltransf 34.2 1.6E+02 0.0034 20.7 5.1 61 13-88 206-266 (287)
242 PF01250 Ribosomal_S6: Ribosom 34.2 89 0.0019 17.5 3.5 31 5-35 12-42 (92)
243 PF05924 SAMP: SAMP Motif; In 34.2 42 0.00092 13.9 1.5 9 13-21 4-12 (20)
244 COG1743 Adenine-specific DNA m 33.4 1.1E+02 0.0024 25.0 4.8 24 11-35 567-590 (875)
245 PF06325 PrmA: Ribosomal prote 33.1 1.8E+02 0.0038 20.6 5.5 55 9-94 236-290 (295)
246 PRK13587 1-(5-phosphoribosyl)- 33.0 1.1E+02 0.0024 20.6 4.3 22 62-84 198-219 (234)
247 PRK03094 hypothetical protein; 32.7 52 0.0011 18.7 2.2 25 63-87 5-29 (80)
248 PLN02476 O-methyltransferase 32.6 1.8E+02 0.0038 20.5 7.5 76 4-95 200-275 (278)
249 COG4123 Predicted O-methyltran 32.6 60 0.0013 22.4 2.9 21 11-32 149-169 (248)
250 PF03976 PPK2: Polyphosphate k 32.4 23 0.00051 24.0 1.0 68 11-86 74-141 (228)
251 COG2813 RsmC 16S RNA G1207 met 32.4 84 0.0018 22.4 3.7 26 8-34 49-74 (300)
252 cd00291 SirA_YedF_YeeD SirA, Y 32.4 80 0.0017 16.4 3.7 24 67-90 38-61 (69)
253 COG1187 RsuA 16S rRNA uridine- 32.4 56 0.0012 22.6 2.8 25 62-89 190-214 (248)
254 COG1060 ThiH Thiamine biosynth 32.3 49 0.0011 24.2 2.6 25 63-87 334-358 (370)
255 COG0421 SpeE Spermidine syntha 32.2 43 0.00094 23.5 2.3 20 12-32 170-189 (282)
256 PF14814 UB2H: Bifunctional tr 32.1 35 0.00076 19.2 1.5 24 62-85 3-26 (85)
257 PRK01544 bifunctional N5-gluta 32.0 53 0.0011 24.9 2.8 20 11-31 248-267 (506)
258 PF13167 GTP-bdg_N: GTP-bindin 32.0 58 0.0013 19.0 2.5 24 63-86 5-28 (95)
259 PHA02517 putative transposase 31.9 38 0.00082 23.0 1.9 26 60-85 175-200 (277)
260 PRK13810 orotate phosphoribosy 31.8 62 0.0014 21.2 2.8 60 20-87 117-181 (187)
261 PF01436 NHL: NHL repeat; Int 31.7 34 0.00074 14.9 1.2 11 24-34 10-20 (28)
262 COG3963 Phospholipid N-methylt 31.7 1.1E+02 0.0024 20.3 3.9 30 5-35 129-158 (194)
263 COG1438 ArgR Arginine represso 31.6 46 0.00099 21.3 2.1 23 62-84 17-39 (150)
264 PRK09472 ftsA cell division pr 31.4 1.1E+02 0.0023 22.5 4.3 79 6-87 104-187 (420)
265 COG3019 Predicted metal-bindin 31.4 55 0.0012 20.8 2.4 20 68-87 39-58 (149)
266 PF12101 DUF3577: Protein of u 31.3 77 0.0017 20.0 3.0 29 8-38 60-88 (137)
267 PF13319 DUF4090: Protein of u 31.2 63 0.0014 18.3 2.4 24 62-85 55-78 (84)
268 PRK00536 speE spermidine synth 30.9 60 0.0013 22.5 2.8 20 12-32 151-170 (262)
269 PF00107 ADH_zinc_N: Zinc-bind 30.8 34 0.00074 20.0 1.4 24 12-36 69-92 (130)
270 PRK12560 adenine phosphoribosy 30.6 67 0.0015 20.9 2.8 65 21-89 110-177 (187)
271 PLN02823 spermine synthase 30.4 57 0.0012 23.4 2.7 19 12-31 199-218 (336)
272 PRK09213 pur operon repressor; 30.3 50 0.0011 23.1 2.3 20 20-40 191-210 (271)
273 PRK06132 hypothetical protein; 30.2 53 0.0011 24.0 2.5 24 12-36 321-344 (359)
274 PF03514 GRAS: GRAS domain fam 30.1 35 0.00075 24.8 1.6 20 67-86 311-330 (374)
275 PF05706 CDKN3: Cyclin-depende 30.0 67 0.0014 20.9 2.7 23 9-32 117-139 (168)
276 PF09077 Phage-MuB_C: Mu B tra 29.9 12 0.00026 21.2 -0.6 18 7-27 27-44 (78)
277 PF13344 Hydrolase_6: Haloacid 29.9 46 0.001 19.2 1.8 21 62-82 38-58 (101)
278 TIGR03853 matur_matur probable 29.8 62 0.0013 18.3 2.2 21 54-76 8-28 (77)
279 PF13399 LytR_C: LytR cell env 29.6 59 0.0013 18.1 2.2 27 62-88 12-38 (90)
280 PF11590 DNAPolymera_Pol: DNA 29.5 46 0.001 16.4 1.5 15 70-84 2-16 (41)
281 cd00132 CRIB PAK (p21 activate 29.3 54 0.0012 16.0 1.7 14 68-81 28-41 (42)
282 smart00115 CASc Caspase, inter 29.3 1.4E+02 0.003 20.2 4.3 25 62-86 26-50 (241)
283 PF04504 DUF573: Protein of un 29.2 48 0.001 19.4 1.8 23 5-28 6-28 (98)
284 PF12368 DUF3650: Protein of u 29.1 43 0.00093 15.1 1.2 14 4-17 14-27 (28)
285 PF08671 SinI: Anti-repressor 29.1 43 0.00094 15.3 1.3 15 69-83 3-20 (30)
286 PF10354 DUF2431: Domain of un 29.0 76 0.0017 20.3 2.9 19 71-89 136-154 (166)
287 cd04882 ACT_Bt0572_2 C-termina 28.9 59 0.0013 16.4 2.0 15 68-82 50-64 (65)
288 PRK01033 imidazole glycerol ph 28.9 1.3E+02 0.0029 20.5 4.2 24 62-85 202-225 (258)
289 PF08676 MutL_C: MutL C termin 28.5 1.3E+02 0.0028 18.2 3.8 18 67-84 67-84 (144)
290 TIGR03798 ocin_TIGR03798 bacte 28.3 71 0.0015 16.9 2.3 17 66-82 25-41 (64)
291 PF14258 DUF4350: Domain of un 28.2 64 0.0014 17.1 2.1 14 19-33 57-70 (70)
292 PRK14702 insertion element IS2 28.0 59 0.0013 22.3 2.3 26 59-84 157-182 (262)
293 PRK00453 rpsF 30S ribosomal pr 28.0 1.3E+02 0.0029 17.5 3.7 30 6-35 14-43 (108)
294 PF02390 Methyltransf_4: Putat 27.8 40 0.00086 22.1 1.4 20 12-32 113-132 (195)
295 cd05175 PI3Kc_IA_alpha Phospho 27.8 1.5E+02 0.0032 21.8 4.4 31 69-99 120-154 (366)
296 PF08123 DOT1: Histone methyla 27.7 66 0.0014 21.4 2.5 33 6-40 133-165 (205)
297 PF10237 N6-adenineMlase: Prob 27.7 1.4E+02 0.0031 19.1 3.9 27 7-34 8-34 (162)
298 COG5379 BtaA S-adenosylmethion 27.6 74 0.0016 23.1 2.8 28 4-32 337-365 (414)
299 KOG1661 Protein-L-isoaspartate 27.5 42 0.0009 23.0 1.5 20 11-31 172-191 (237)
300 cd00895 PI3Kc_C2_beta Phosphoi 27.5 1.4E+02 0.0031 21.8 4.3 31 69-99 113-147 (354)
301 cd06542 GH18_EndoS-like Endo-b 27.4 1.2E+02 0.0026 20.3 3.8 28 7-35 126-153 (255)
302 TIGR02884 spore_pdaA delta-lac 27.4 68 0.0015 21.4 2.5 29 4-33 163-194 (224)
303 KOG1269 SAM-dependent methyltr 27.4 35 0.00076 24.9 1.2 71 11-86 194-266 (364)
304 PRK10178 D-alanyl-D-alanine di 27.0 1.3E+02 0.0027 19.9 3.6 28 9-36 44-71 (184)
305 KOG2661 Peptidase family M48 [ 26.8 1.1E+02 0.0023 22.6 3.5 15 25-39 255-269 (424)
306 smart00463 SMR Small MutS-rela 26.8 1E+02 0.0023 16.7 2.9 20 3-22 6-25 (80)
307 COG2521 Predicted archaeal met 26.7 75 0.0016 22.3 2.6 57 10-89 223-279 (287)
308 COG3669 Alpha-L-fucosidase [Ca 26.4 71 0.0015 23.9 2.6 24 62-85 50-73 (430)
309 cd05168 PI4Kc_III_beta Phospho 26.3 1.7E+02 0.0036 20.7 4.3 30 70-99 55-88 (293)
310 cd04909 ACT_PDH-BS C-terminal 26.2 70 0.0015 16.6 2.0 16 67-82 54-69 (69)
311 PRK02289 4-oxalocrotonate taut 26.2 1.1E+02 0.0023 15.8 3.7 34 2-35 8-46 (60)
312 KOG1136 Predicted cleavage and 25.9 72 0.0016 23.6 2.5 26 11-37 218-243 (501)
313 PRK13812 orotate phosphoribosy 25.9 90 0.0019 20.1 2.8 17 24-40 105-121 (176)
314 cd00891 PI3Kc Phosphoinositide 25.8 1.4E+02 0.0031 21.7 4.0 30 70-99 113-146 (352)
315 PF03662 Glyco_hydro_79n: Glyc 25.8 46 0.001 23.9 1.5 17 67-83 110-126 (319)
316 PF10281 Ish1: Putative stress 25.7 87 0.0019 14.7 2.2 18 66-83 4-21 (38)
317 PRK11057 ATP-dependent DNA hel 25.3 3E+02 0.0064 21.4 5.9 63 9-78 414-476 (607)
318 PF11599 AviRa: RRNA methyltra 25.3 1.1E+02 0.0025 21.0 3.2 25 8-33 190-214 (246)
319 cd03422 YedF YedF is a bacteri 25.2 1.2E+02 0.0026 16.2 3.6 23 68-90 39-61 (69)
320 cd03423 SirA SirA (also known 25.2 1.2E+02 0.0026 16.1 3.7 25 68-92 39-63 (69)
321 PHA03411 putative methyltransf 25.0 61 0.0013 22.8 2.0 17 66-82 193-209 (279)
322 cd04908 ACT_Bt0572_1 N-termina 25.0 72 0.0016 16.5 1.9 16 68-83 50-65 (66)
323 COG4446 Uncharacterized protei 24.9 1.2E+02 0.0027 18.8 3.1 20 7-28 55-74 (141)
324 PF05711 TylF: Macrocin-O-meth 24.9 29 0.00062 23.9 0.4 25 11-36 191-215 (248)
325 PF02913 FAD-oxidase_C: FAD li 24.8 71 0.0015 20.7 2.2 20 8-28 223-242 (248)
326 PRK15440 L-rhamnonate dehydrat 24.8 1.1E+02 0.0023 22.5 3.3 26 62-87 267-292 (394)
327 TIGR01033 DNA-binding regulato 24.8 1.5E+02 0.0032 20.3 3.8 14 25-38 92-105 (238)
328 PF06897 DUF1269: Protein of u 24.8 1.2E+02 0.0025 17.9 2.9 21 13-34 43-63 (102)
329 PF00403 HMA: Heavy-metal-asso 24.7 76 0.0016 16.1 2.0 57 5-81 6-62 (62)
330 TIGR00007 phosphoribosylformim 24.7 2E+02 0.0044 18.9 4.4 23 62-85 195-217 (230)
331 PF01536 SAM_decarbox: Adenosy 24.7 1.3E+02 0.0029 21.7 3.7 28 62-89 29-56 (331)
332 PF15636 Tox-GHH: GHH signatur 24.5 57 0.0012 18.4 1.5 14 4-17 35-48 (79)
333 cd02554 PseudoU_synth_RluF Pse 24.5 1.1E+02 0.0023 19.6 2.9 25 62-89 116-140 (164)
334 cd01842 SGNH_hydrolase_like_5 24.4 1.3E+02 0.0028 19.9 3.3 28 9-38 76-103 (183)
335 PRK11611 enhanced serine sensi 24.3 1.6E+02 0.0034 20.4 3.8 34 61-94 99-132 (246)
336 cd00893 PI4Kc_III Phosphoinosi 23.9 2.1E+02 0.0045 20.2 4.5 30 70-99 55-88 (289)
337 TIGR00423 radical SAM domain p 23.9 97 0.0021 21.7 2.8 22 65-86 282-303 (309)
338 PF07647 SAM_2: SAM domain (St 23.8 91 0.002 16.1 2.2 16 66-81 4-19 (66)
339 PF12912 N_NLPC_P60: NLPC_P60 23.7 72 0.0016 19.2 1.9 22 60-81 101-122 (124)
340 PF08901 DUF1847: Protein of u 23.7 56 0.0012 21.0 1.5 26 62-87 64-89 (157)
341 cd03319 L-Ala-DL-Glu_epimerase 23.7 1.7E+02 0.0037 20.3 4.1 27 62-88 234-260 (316)
342 PF07279 DUF1442: Protein of u 23.5 1.3E+02 0.0029 20.4 3.3 34 2-38 119-153 (218)
343 PF00540 Gag_p17: gag gene pro 23.5 82 0.0018 19.9 2.2 21 6-27 51-71 (140)
344 COG2518 Pcm Protein-L-isoaspar 23.4 76 0.0017 21.4 2.1 18 16-34 153-170 (209)
345 cd03067 PDI_b_PDIR_N PDIb fami 23.4 1.8E+02 0.0039 17.6 3.4 25 10-35 35-59 (112)
346 PLN02589 caffeoyl-CoA O-methyl 23.4 1.4E+02 0.003 20.5 3.5 33 5-39 163-195 (247)
347 PF07021 MetW: Methionine bios 23.4 1.9E+02 0.0042 19.2 4.0 31 60-90 140-170 (193)
348 PF11372 DUF3173: Domain of un 23.4 1.1E+02 0.0025 16.3 2.4 18 5-22 13-30 (59)
349 PRK05066 arginine repressor; P 23.3 68 0.0015 20.5 1.8 20 62-81 20-39 (156)
350 PRK11018 hypothetical protein; 23.3 1.4E+02 0.0031 16.4 3.7 23 68-90 48-70 (78)
351 PF05336 DUF718: Domain of unk 23.2 1.7E+02 0.0037 17.2 3.7 31 67-97 24-57 (106)
352 PRK05473 hypothetical protein; 23.1 78 0.0017 18.3 1.8 20 7-27 16-35 (86)
353 cd05831 Ribosomal_P1 Ribosomal 23.1 98 0.0021 18.3 2.4 26 60-85 12-37 (103)
354 PF07796 DUF1638: Protein of u 23.1 1.4E+02 0.0031 18.8 3.3 32 3-35 7-39 (166)
355 PF14566 PTPlike_phytase: Inos 23.0 1.7E+02 0.0037 18.2 3.6 28 4-32 103-130 (149)
356 PF08704 GCD14: tRNA methyltra 23.0 46 0.001 22.9 1.1 25 13-37 126-150 (247)
357 PRK06402 rpl12p 50S ribosomal 22.9 1E+02 0.0022 18.5 2.4 23 62-84 13-35 (106)
358 PF04298 Zn_peptidase_2: Putat 22.9 1.7E+02 0.0037 19.9 3.8 29 62-90 33-62 (222)
359 cd05166 PI3Kc_II Phosphoinosit 22.9 1.9E+02 0.004 21.1 4.2 30 70-99 113-146 (353)
360 cd03315 MLE_like Muconate lact 22.8 2.1E+02 0.0046 19.3 4.3 27 62-88 186-212 (265)
361 cd07986 LPLAT_ACT14924-like Ly 22.5 1.3E+02 0.0029 19.6 3.2 22 10-32 83-104 (210)
362 PF07378 FlbT: Flagellar prote 22.5 1.7E+02 0.0036 18.0 3.4 16 21-37 4-19 (126)
363 PF00334 NDK: Nucleoside dipho 22.5 1.2E+02 0.0025 18.5 2.7 22 67-88 16-37 (135)
364 cd05177 PI3Kc_C2_gamma Phospho 22.5 2.2E+02 0.0048 20.8 4.5 30 70-99 114-147 (354)
365 PF15581 Imm35: Immunity prote 22.5 1.2E+02 0.0027 17.6 2.6 28 4-33 41-71 (93)
366 cd04411 Ribosomal_P1_P2_L12p R 22.5 1.1E+02 0.0024 18.2 2.5 23 62-84 13-35 (105)
367 COG0566 SpoU rRNA methylases [ 22.4 1.1E+02 0.0023 21.1 2.8 23 67-89 171-193 (260)
368 PTZ00445 p36-lilke protein; Pr 22.4 1.7E+02 0.0037 20.0 3.6 19 68-86 80-98 (219)
369 COG0347 GlnK Nitrogen regulato 22.3 1.9E+02 0.0042 17.5 3.7 27 7-34 66-96 (112)
370 PF06135 DUF965: Bacterial pro 22.3 71 0.0015 18.2 1.5 19 8-27 14-32 (79)
371 cd03420 SirA_RHOD_Pry_redox Si 22.2 1.4E+02 0.0031 15.9 3.6 24 68-91 39-62 (69)
372 PF13405 EF-hand_6: EF-hand do 22.2 89 0.0019 13.6 1.9 18 62-79 13-31 (31)
373 PF12760 Zn_Tnp_IS1595: Transp 22.2 77 0.0017 15.6 1.6 13 7-19 2-14 (46)
374 PF14561 TPR_20: Tetratricopep 22.2 87 0.0019 17.8 2.0 21 5-26 54-74 (90)
375 PF03574 Peptidase_S48: Peptid 22.2 1.1E+02 0.0023 19.1 2.4 25 3-28 14-38 (149)
376 COG3660 Predicted nucleoside-d 22.1 1.4E+02 0.0031 21.3 3.3 77 4-85 175-252 (329)
377 PF09286 Pro-kuma_activ: Pro-k 22.0 93 0.002 19.0 2.2 26 62-87 58-83 (143)
378 PF01904 DUF72: Protein of unk 22.0 1.8E+02 0.0039 19.5 3.8 29 4-33 183-211 (230)
379 TIGR03366 HpnZ_proposed putati 21.9 2.4E+02 0.0053 19.0 4.5 21 14-35 200-220 (280)
380 PRK00794 flbT flagellar biosyn 21.9 1.7E+02 0.0036 18.2 3.3 18 21-39 7-24 (132)
381 PF01564 Spermine_synth: Sperm 21.8 57 0.0012 22.2 1.3 22 11-33 170-191 (246)
382 cd01123 Rad51_DMC1_radA Rad51_ 21.8 1.6E+02 0.0035 19.2 3.5 33 4-36 92-125 (235)
383 PF13580 SIS_2: SIS domain; PD 21.7 1.2E+02 0.0026 18.5 2.7 25 9-34 19-43 (138)
384 KOG1720 Protein tyrosine phosp 21.7 1.6E+02 0.0035 20.1 3.4 26 7-34 130-155 (225)
385 PF15603 Imm45: Immunity prote 21.6 1.7E+02 0.0037 16.6 3.4 27 6-33 56-82 (82)
386 cd00595 NDPk Nucleoside diphos 21.3 1.5E+02 0.0032 18.1 3.0 22 67-88 16-37 (133)
387 COG1902 NemA NADH:flavin oxido 21.2 1.1E+02 0.0025 22.2 2.8 81 5-89 76-172 (363)
388 TIGR01743 purR_Bsub pur operon 21.2 76 0.0016 22.2 1.8 20 20-40 189-208 (268)
389 cd05832 Ribosomal_L12p Ribosom 21.2 1.1E+02 0.0023 18.4 2.3 21 62-82 13-33 (106)
390 TIGR03685 L21P_arch 50S riboso 21.1 1.2E+02 0.0026 18.1 2.4 21 62-82 13-33 (105)
391 COG4551 Predicted protein tyro 21.0 1.6E+02 0.0035 17.5 2.9 22 11-34 62-83 (109)
392 PRK09902 hypothetical protein; 20.9 2.4E+02 0.0052 19.1 4.1 31 6-37 125-162 (216)
393 smart00562 NDK These are enzym 20.9 1.5E+02 0.0034 17.9 3.1 23 66-88 15-37 (135)
394 KOG1092 Ypt/Rab-specific GTPas 20.8 95 0.0021 23.5 2.3 17 4-20 455-471 (484)
395 PF14794 DUF4479: Domain of un 20.8 95 0.0021 17.2 1.9 15 69-83 54-68 (73)
396 COG0220 Predicted S-adenosylme 20.7 1.2E+02 0.0026 20.5 2.7 68 12-86 144-221 (227)
397 TIGR02351 thiH thiazole biosyn 20.7 88 0.0019 22.6 2.2 19 65-83 341-359 (366)
398 cd04883 ACT_AcuB C-terminal AC 20.5 1.2E+02 0.0026 15.6 2.3 17 67-83 53-69 (72)
399 cd01414 SAICAR_synt_Sc non-met 20.4 2.1E+02 0.0046 20.1 3.9 49 26-83 202-251 (279)
400 TIGR00150 HI0065_YjeE ATPase, 20.4 2.3E+02 0.0049 17.5 3.8 25 7-32 4-28 (133)
401 PF05134 T2SL: Type II secreti 20.4 1.4E+02 0.003 20.0 2.9 21 68-88 114-134 (230)
402 cd05176 PI3Kc_C2_alpha Phospho 20.3 2.6E+02 0.0056 20.5 4.4 30 70-99 113-146 (353)
403 TIGR00530 AGP_acyltrn 1-acyl-s 20.2 1.9E+02 0.0041 16.6 3.3 23 8-31 72-94 (130)
404 PF04989 CmcI: Cephalosporin h 20.2 61 0.0013 21.8 1.2 28 9-37 124-151 (206)
405 PF11305 DUF3107: Protein of u 20.1 1.5E+02 0.0032 16.6 2.5 26 7-33 18-44 (74)
406 COG2609 AceE Pyruvate dehydrog 20.0 1E+02 0.0022 25.1 2.4 24 62-87 271-294 (887)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.92 E-value=2.8e-25 Score=154.55 Aligned_cols=98 Identities=41% Similarity=0.621 Sum_probs=87.5
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCC-CCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPE-LPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~-~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
||||||+|++|++||+||+++| +|||+|+|.|.+.|+ .......+.....+|+.|++.+.+|++||.+||+.++.++|
T Consensus 244 WiLhdwtDedcvkiLknC~~sL-~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~g 322 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSL-PPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEG 322 (342)
T ss_pred eecccCChHHHHHHHHHHHHhC-CCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhc
Confidence 7999999999999999999999 999999999999986 32222224456789999999987899999999999999999
Q ss_pred CCeeEEEEcCCCeeEEEEEC
Q 037161 80 FSGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 80 f~~~~~~~~~~~~~vie~~k 99 (99)
|.+..+...+..+++||++|
T Consensus 323 F~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 323 FPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred CceeEEEeccCccchheeCC
Confidence 99999999999999999987
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.86 E-value=5e-22 Score=133.54 Aligned_cols=74 Identities=35% Similarity=0.682 Sum_probs=63.4
Q ss_pred CccccCChHHHHHHHHHHHHhccCCC--ceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHH
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKED--GKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLAT 76 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pg--g~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~ 76 (99)
||||+|+|++|++||+|++++| +|| |+|+|+|.++++.+..+........+|++||+.+ +|++||.+||++||+
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al-~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAAL-KPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALLK 241 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHS-EECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHh-CCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHhC
Confidence 6999999999999999999999 988 9999999999988766533222368999999998 799999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.55 E-value=2.1e-14 Score=99.63 Aligned_cols=82 Identities=10% Similarity=0.244 Sum_probs=59.3
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhh-hhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKAN-SQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~-~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
+++|+|+++++.++|++++++| +|||+++|+|.+.++...+. ..... ...++.|+... ..-++.+||.+||++||
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L-~pgG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAM-RSGGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV--LGFKEQARYKEILESLG 298 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhc-CCCCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc--ccCCCHHHHHHHHHHcC
Confidence 5799999999999999999999 99999999999887654322 11111 11222222221 23445799999999999
Q ss_pred CCeeEEE
Q 037161 80 FSGIRFQ 86 (99)
Q Consensus 80 f~~~~~~ 86 (99)
|+.++++
T Consensus 299 f~~v~~~ 305 (306)
T TIGR02716 299 YKDVTMV 305 (306)
T ss_pred CCeeEec
Confidence 9998764
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.99 E-value=1.2e-09 Score=72.81 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=59.1
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
|++-+.+|++.++.|++|+++| +|+|.|+|-|++...+. ..+|- .+++-.||.+.|.++|++||+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L-~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQAL-KPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHE-EEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-
T ss_pred HhhccCCHHHHHHHHHHHHHhC-cCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCC
Confidence 6788999999999999999999 99999999999977541 13442 468999999999999999999
Q ss_pred CeeEEEE
Q 037161 81 SGIRFQC 87 (99)
Q Consensus 81 ~~~~~~~ 87 (99)
++++...
T Consensus 195 ~~v~~~~ 201 (218)
T PF05891_consen 195 RLVKEEK 201 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9998754
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.81 E-value=2.2e-09 Score=72.18 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=55.8
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhc-----------------CCCce
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTH-----------------SPRGK 64 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~-----------------~~~g~ 64 (99)
++|.+++++..++|++++++| +|||++++.|.+.+++.... . .+..+.+... ...-+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~L-kpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGL-NPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMR 204 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhc-CCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence 578899989999999999999 99999999998766543211 0 1111111000 00224
Q ss_pred ecCHHHHHHHHHHcCCCeeEEE
Q 037161 65 VRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 65 ~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
..|.+|+.+++++|||+.++..
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~~ 226 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVELW 226 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHHH
Confidence 6799999999999999976653
No 6
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.66 E-value=2.9e-07 Score=61.12 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=61.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhh----cCCC------------cee
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLT----HSPR------------GKV 65 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~----~~~~------------g~~ 65 (99)
++|++++ ...+|+++++.| +|||++++.|...+.... .......+...++. ...+ ...
T Consensus 130 ~l~~~~~--~~~~l~~~~~~L-~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 130 GLRNVPD--IDKALREMYRVL-KPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred ccccCCC--HHHHHHHHHHhc-cCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 5677776 568899999999 999999999987654321 00000001000000 0001 234
Q ss_pred cCHHHHHHHHHHcCCCeeEEEEcC-CCeeEEEEEC
Q 037161 66 RTKHEFINLATAAGFSGIRFQCFV-CNSWVMEFYK 99 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 99 (99)
++.++|.++|++|||+.+++.... +..+++.++|
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 578999999999999999999865 6778888876
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.60 E-value=4.8e-07 Score=61.93 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=55.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|++++++..++|+++++.| +|||++++.|...+...... . .... ..... .-...+.++|.++|++|||+
T Consensus 126 ~l~h~~~~d~~~~l~~i~r~L-kPGG~lvi~d~~~~~~~~~~--~---~~~~--~~~~~-~~~~~~~~~~~~~l~~aGF~ 196 (263)
T PTZ00098 126 AILHLSYADKKKLFEKCYKWL-KPNGILLITDYCADKIENWD--E---EFKA--YIKKR-KYTLIPIQEYGDLIKSCNFQ 196 (263)
T ss_pred hHHhCCHHHHHHHHHHHHHHc-CCCcEEEEEEeccccccCcH--H---HHHH--HHHhc-CCCCCCHHHHHHHHHHCCCC
Confidence 356678778899999999999 99999999998765432111 0 0111 11111 22346889999999999999
Q ss_pred eeEEEEcC
Q 037161 82 GIRFQCFV 89 (99)
Q Consensus 82 ~~~~~~~~ 89 (99)
++......
T Consensus 197 ~v~~~d~~ 204 (263)
T PTZ00098 197 NVVAKDIS 204 (263)
T ss_pred eeeEEeCc
Confidence 99987753
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.58 E-value=6.8e-07 Score=58.74 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=59.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchH---hhhcC-------CC---------
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVF---MLTHS-------PR--------- 62 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~---m~~~~-------~~--------- 62 (99)
++|+.++ ...+|+++++.| +|||++++.+...+... . . ...++.. ++... .+
T Consensus 115 ~~~~~~~--~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (223)
T TIGR01934 115 GLRNVTD--IQKALREMYRVL-KPGGRLVILEFSKPANA-L-L----KKFYKFYLKNVLPSIGGLISKNAEAYTYLPESI 185 (223)
T ss_pred eeCCccc--HHHHHHHHHHHc-CCCcEEEEEEecCCCch-h-h----HHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHH
Confidence 3566665 678999999999 99999999998654331 1 1 1111111 11100 00
Q ss_pred ceecCHHHHHHHHHHcCCCeeEEEEcCC-CeeEEEEEC
Q 037161 63 GKVRTKHEFINLATAAGFSGIRFQCFVC-NSWVMEFYK 99 (99)
Q Consensus 63 g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vie~~k 99 (99)
....+.++|..+|+++||+.+++.++.. ...+++++|
T Consensus 186 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 186 RAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1234788999999999999999998865 467887775
No 9
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=2.1e-07 Score=59.35 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=57.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhh---hhhchHhhhcC---------CCceecCHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKAN---SQIDVFMLTHS---------PRGKVRTKH 69 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~---~~~dl~m~~~~---------~~g~~rt~~ 69 (99)
++|+|+| -.+.|+++++.| +|||+++|.|...++..-........ .......+... +-..-.+.+
T Consensus 53 ~l~~~~d--~~~~l~ei~rvL-kpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~ 129 (160)
T PLN02232 53 GLRNVVD--RLRAMKEMYRVL-KPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGE 129 (160)
T ss_pred hhhcCCC--HHHHHHHHHHHc-CcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHH
Confidence 5788876 578999999999 99999999998755331100000000 00000000000 002345889
Q ss_pred HHHHHHHHcCCCeeEEEEcC-CCeeEEEEE
Q 037161 70 EFINLATAAGFSGIRFQCFV-CNSWVMEFY 98 (99)
Q Consensus 70 e~~~ll~~aGf~~~~~~~~~-~~~~vie~~ 98 (99)
|+.++|+++||+.++..... +..++..+.
T Consensus 130 el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 159 (160)
T PLN02232 130 ELETLALEAGFSSACHYEISGGFMGNLVAM 159 (160)
T ss_pred HHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence 99999999999999887764 344554443
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.54 E-value=6.5e-07 Score=61.24 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=58.4
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHh--h-hcCCC-----------ceecC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFM--L-THSPR-----------GKVRT 67 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m--~-~~~~~-----------g~~rt 67 (99)
++|+++| -.++|++++++| +|||+++|.|...++..-.. ......+...+ + ..... .+-+|
T Consensus 154 ~l~~~~d--~~~~l~ei~rvL-kpGG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s 228 (261)
T PLN02233 154 GLRNVVD--RLKAMQEMYRVL-KPGSRVSILDFNKSTQPFTT--SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLT 228 (261)
T ss_pred ccccCCC--HHHHHHHHHHHc-CcCcEEEEEECCCCCcHHHH--HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCC
Confidence 5788886 567899999999 99999999998755432111 00001111000 0 00000 23569
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCC-CeeEEEE
Q 037161 68 KHEFINLATAAGFSGIRFQCFVC-NSWVMEF 97 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~~~-~~~vie~ 97 (99)
.+|+.++++++||+.++...+.. ...+.-+
T Consensus 229 ~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 229 GEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 99999999999999999887754 4445444
No 11
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.51 E-value=9.4e-07 Score=60.39 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=55.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|.++| ..++++++++.| +|||++++.|.+.... .+. ....++.+...+ .+..++..+|.++|+++||.
T Consensus 155 v~~~~~d--~~~~l~~~~r~L-kpGG~l~i~~~~~~~~-~~~-----~~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVL-KPGGRFAISDVVLRGE-LPE-----EIRNDAELYAGC-VAGALQEEEYLAMLAEAGFV 224 (272)
T ss_pred cccCCCC--HHHHHHHHHHHc-CCCcEEEEEEeeccCC-CCH-----HHHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCC
Confidence 5666666 457899999999 9999999999875442 111 122344444333 56778999999999999999
Q ss_pred eeEEEE
Q 037161 82 GIRFQC 87 (99)
Q Consensus 82 ~~~~~~ 87 (99)
.+++..
T Consensus 225 ~v~i~~ 230 (272)
T PRK11873 225 DITIQP 230 (272)
T ss_pred ceEEEe
Confidence 988754
No 12
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.49 E-value=1e-06 Score=62.55 Aligned_cols=72 Identities=26% Similarity=0.454 Sum_probs=52.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|.|+|.+ ++|+++++.| +|||+++|.+.+.++... .+ ...+..+ ...+.+|+.++++++||+
T Consensus 187 ~L~~~~d~~--~~L~e~~rvL-kPGG~LvIi~~~~p~~~~----~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~ 250 (340)
T PLN02490 187 SIEYWPDPQ--RGIKEAYRVL-KIGGKACLIGPVHPTFWL----SR--FFADVWM-------LFPKEEEYIEWFTKAGFK 250 (340)
T ss_pred hhhhCCCHH--HHHHHHHHhc-CCCcEEEEEEecCcchhH----HH--Hhhhhhc-------cCCCHHHHHHHHHHCCCe
Confidence 578898864 6899999999 999999998765443211 11 1122211 125789999999999999
Q ss_pred eeEEEEcC
Q 037161 82 GIRFQCFV 89 (99)
Q Consensus 82 ~~~~~~~~ 89 (99)
.+++..+.
T Consensus 251 ~V~i~~i~ 258 (340)
T PLN02490 251 DVKLKRIG 258 (340)
T ss_pred EEEEEEcC
Confidence 99998764
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.41 E-value=2.2e-06 Score=57.07 Aligned_cols=92 Identities=20% Similarity=0.306 Sum_probs=58.9
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHh----------------hhcCCCcee
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFM----------------LTHSPRGKV 65 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m----------------~~~~~~g~~ 65 (99)
.+|++++. .++|+++.+.| +|||++++.|...+... .........+...+ +... ....
T Consensus 123 ~l~~~~~~--~~~l~~~~~~L-k~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~ 196 (231)
T TIGR02752 123 GLRNVPDY--MQVLREMYRVV-KPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQES-TRDF 196 (231)
T ss_pred ccccCCCH--HHHHHHHHHHc-CcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHH-HHHc
Confidence 35666663 57999999999 99999999887544321 10000000011000 0000 1234
Q ss_pred cCHHHHHHHHHHcCCCeeEEEEcC-CCeeEEEEEC
Q 037161 66 RTKHEFINLATAAGFSGIRFQCFV-CNSWVMEFYK 99 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 99 (99)
.|.+++.++|+++||+++++.... +..+++-++|
T Consensus 197 ~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 197 PGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred CCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 577899999999999999998876 6677877776
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.37 E-value=1.3e-06 Score=54.49 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=53.3
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
++||+.+| ...+|+++++.| +|||.+++.+...+.. .+. .. .......... .....+|.++|..+++++||
T Consensus 86 ~~l~~~~d--~~~~l~~l~~~L-kpgG~l~~~~~~~~~~-~~~---~~-~~~~~~~~~~-~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 86 DVLEHLPD--PEEFLKELSRLL-KPGGYLVISDPNRDDP-SPR---SF-LKWRYDRPYG-GHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp SSGGGSSH--HHHHHHHHHHCE-EEEEEEEEEEEBTTSH-HHH---HH-HHCCGTCHHT-TTTEEBBHHHHHHHHHHTTE
T ss_pred HHHhhccc--HHHHHHHHHHhc-CCCCEEEEEEcCCcch-hhh---HH-HhcCCcCccC-ceeccCCHHHHHHHHHHCCC
Confidence 47888886 889999999999 9999999998765431 000 00 1111111111 25689999999999999999
Q ss_pred CeeE
Q 037161 81 SGIR 84 (99)
Q Consensus 81 ~~~~ 84 (99)
++++
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 15
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.34 E-value=6.3e-06 Score=54.69 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=75.6
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
|++|--+-+.+..+++.+.+.| +|||.++++-.+..++.-.+ .-...||-.+-.-......|..++..++.+++||
T Consensus 110 N~lHI~p~~~~~~lf~~a~~~L-~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 110 NMLHISPWSAVEGLFAGAARLL-KPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred hHHHhcCHHHHHHHHHHHHHhC-CCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 5788888899999999999999 99999999999877653221 1235677766554457889999999999999999
Q ss_pred CeeEEEEcCCCeeEEEEEC
Q 037161 81 SGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 81 ~~~~~~~~~~~~~vie~~k 99 (99)
+.++.+..+.+.-++..+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 9999999887655555444
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.27 E-value=4.9e-07 Score=61.05 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhc----------------hHhhhcCCCcee
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQID----------------VFMLTHSPRGKV 65 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~d----------------l~m~~~~~~g~~ 65 (99)
.||+.+| -.+.|++++++| +|||+++|+|...|+.+ .....+...+. ...+..+ =-+-
T Consensus 125 glrn~~d--~~~~l~E~~RVL-kPGG~l~ile~~~p~~~--~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S-i~~f 198 (233)
T PF01209_consen 125 GLRNFPD--RERALREMYRVL-KPGGRLVILEFSKPRNP--LLRALYKFYFKYILPLIGRLLSGDREAYRYLPES-IRRF 198 (233)
T ss_dssp -GGG-SS--HHHHHHHHHHHE-EEEEEEEEEEEEB-SSH--HHHHHHHH-------------------------------
T ss_pred hHHhhCC--HHHHHHHHHHHc-CCCeEEEEeeccCCCCc--hhhceeeeeecccccccccccccccccccccccc-cccc
Confidence 4788887 456899999999 99999999999877542 10000000000 0011111 1234
Q ss_pred cCHHHHHHHHHHcCCCeeEEEEcC-CCeeEEEEEC
Q 037161 66 RTKHEFINLATAAGFSGIRFQCFV-CNSWVMEFYK 99 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 99 (99)
.+.+|+.++++++||+.++..++. +..++..+.|
T Consensus 199 ~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 199 PSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccCC
Confidence 468899999999999999987764 5566666655
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.21 E-value=1.4e-05 Score=56.25 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=52.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
+||+..| -..+|++++++| +|||++++-+.+++.......... ..... | .. .-..+|.+++.+|++++||+
T Consensus 198 vl~H~~d--p~~~L~~l~~~L-kpGG~lvl~~~~i~~~~~~~l~p~-~~y~~--~-~~--~~~lps~~~l~~~L~~aGF~ 268 (322)
T PRK15068 198 VLYHRRS--PLDHLKQLKDQL-VPGGELVLETLVIDGDENTVLVPG-DRYAK--M-RN--VYFIPSVPALKNWLERAGFK 268 (322)
T ss_pred hhhccCC--HHHHHHHHHHhc-CCCcEEEEEEEEecCCCccccCch-hHHhc--C-cc--ceeCCCHHHHHHHHHHcCCc
Confidence 6777776 457899999999 999999887666665432210000 00001 1 00 11346899999999999999
Q ss_pred eeEEEEc
Q 037161 82 GIRFQCF 88 (99)
Q Consensus 82 ~~~~~~~ 88 (99)
.+++...
T Consensus 269 ~i~~~~~ 275 (322)
T PRK15068 269 DVRIVDV 275 (322)
T ss_pred eEEEEeC
Confidence 9998765
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.19 E-value=1.3e-05 Score=56.36 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=52.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
+||++++ -...|++++++| +|||++++.+.+++.......... .. .-.|. + .-...|.+++..|++++||+
T Consensus 197 vL~H~~d--p~~~L~el~r~L-kpGG~Lvletl~i~g~~~~~l~p~-~r--y~k~~-n--v~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 197 VLYHRKS--PLEHLKQLKHQL-VIKGELVLETLVIDGDLNTVLVPK-DR--YAKMK-N--VYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred hhhccCC--HHHHHHHHHHhc-CCCCEEEEEEEEecCccccccCch-HH--HHhcc-c--cccCCCHHHHHHHHHHCCCe
Confidence 6777876 467899999999 999999998877764422110000 00 00111 1 01235899999999999999
Q ss_pred eeEEEEc
Q 037161 82 GIRFQCF 88 (99)
Q Consensus 82 ~~~~~~~ 88 (99)
.+++...
T Consensus 268 ~V~i~~~ 274 (314)
T TIGR00452 268 NFRILDV 274 (314)
T ss_pred EEEEEec
Confidence 9998765
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=98.17 E-value=2.2e-05 Score=55.65 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=52.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCC--CchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPE--NSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~--~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
.+|+++| ..++|+++++.| +|||+++|.+........ ..........++-...... .....+.++|.++++++|
T Consensus 195 ~~~h~~d--~~~~l~e~~rvL-kpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVA-APGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLG 270 (340)
T ss_pred chhccCC--HHHHHHHHHHHc-CCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCC
Confidence 4677877 568999999999 999999999875432111 0000000111111111100 112358999999999999
Q ss_pred CCeeEEEEcC
Q 037161 80 FSGIRFQCFV 89 (99)
Q Consensus 80 f~~~~~~~~~ 89 (99)
|+++++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999987653
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.16 E-value=1.1e-05 Score=59.08 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=53.7
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|+++| -.++|+++++.| +|||+++|.|.......... ... .. +... +...++.++|.++++++||+
T Consensus 341 ~l~h~~d--~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~---~~~---~~--~~~~-g~~~~~~~~~~~~l~~aGF~ 408 (475)
T PLN02336 341 TILHIQD--KPALFRSFFKWL-KPGGKVLISDYCRSPGTPSP---EFA---EY--IKQR-GYDLHDVQAYGQMLKDAGFD 408 (475)
T ss_pred cccccCC--HHHHHHHHHHHc-CCCeEEEEEEeccCCCCCcH---HHH---HH--HHhc-CCCCCCHHHHHHHHHHCCCe
Confidence 5677776 458999999999 99999999998765432211 111 11 1112 45678999999999999999
Q ss_pred eeEEEEc
Q 037161 82 GIRFQCF 88 (99)
Q Consensus 82 ~~~~~~~ 88 (99)
++.+...
T Consensus 409 ~i~~~d~ 415 (475)
T PLN02336 409 DVIAEDR 415 (475)
T ss_pred eeeeecc
Confidence 9977653
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.15 E-value=9.6e-06 Score=54.95 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=53.2
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhch-----------H-hh-hcCCCceecCH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDV-----------F-ML-THSPRGKVRTK 68 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl-----------~-m~-~~~~~g~~rt~ 68 (99)
++|..++++..+++++++++| +|||.+++.|.+.+++...... ......+. . +. .....-..-|.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~L-kpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGL-NPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhc-CCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 578888888899999999999 9999999999876554321100 00000000 0 00 00001234589
Q ss_pred HHHHHHHHHcCCCeeEE
Q 037161 69 HEFINLATAAGFSGIRF 85 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~~~ 85 (99)
++..+||++|||+.+..
T Consensus 212 ~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 212 ETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHcCchhHHH
Confidence 99999999999987654
No 22
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.05 E-value=6.5e-05 Score=51.02 Aligned_cols=91 Identities=24% Similarity=0.282 Sum_probs=58.5
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchH-hhhcC----------------CCce
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVF-MLTHS----------------PRGK 64 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~-m~~~~----------------~~g~ 64 (99)
-||+.+| -.+.|+.++++| +|||+++|+|...|+.+... .....+.+. .+-.. ..-+
T Consensus 128 glrnv~d--~~~aL~E~~RVl-KpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~ 201 (238)
T COG2226 128 GLRNVTD--IDKALKEMYRVL-KPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRR 201 (238)
T ss_pred hhhcCCC--HHHHHHHHHHhh-cCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHh
Confidence 3677776 789999999999 99999999998877553221 111112222 11111 0122
Q ss_pred ecCHHHHHHHHHHcCCCeeEEEEcC-CCeeEEEEE
Q 037161 65 VRTKHEFINLATAAGFSGIRFQCFV-CNSWVMEFY 98 (99)
Q Consensus 65 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~ 98 (99)
.-+.+++.++++.+||+.+....+. +...+.-+.
T Consensus 202 ~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 202 FPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred CCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 3467889999999999999866654 344444443
No 23
>PRK04266 fibrillarin; Provisional
Probab=97.93 E-value=6.5e-05 Score=50.58 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=44.9
Q ss_pred ccccCChH-HHHHHHHHHHHhccCCCceEEEE-eeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 2 ILHAWSDE-HCLKLLKNCYESINKEDGKLIVV-EAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 2 vlHdw~d~-~~~~iL~~~~~al~~pgg~l~I~-e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
|+|+.++. +...+|+++++.| +|||+++|. .. .+ .|... .. .|..++..++++++|
T Consensus 145 i~~d~~~p~~~~~~L~~~~r~L-KpGG~lvI~v~~----~~-----------~d~~~-----~~-~~~~~~~~~~l~~aG 202 (226)
T PRK04266 145 IYQDVAQPNQAEIAIDNAEFFL-KDGGYLLLAIKA----RS-----------IDVTK-----DP-KEIFKEEIRKLEEGG 202 (226)
T ss_pred EEECCCChhHHHHHHHHHHHhc-CCCcEEEEEEec----cc-----------ccCcC-----CH-HHHHHHHHHHHHHcC
Confidence 57777654 3456789999999 999999994 32 10 11100 01 122355679999999
Q ss_pred CCeeEEEEcCC
Q 037161 80 FSGIRFQCFVC 90 (99)
Q Consensus 80 f~~~~~~~~~~ 90 (99)
|+.++...+..
T Consensus 203 F~~i~~~~l~p 213 (226)
T PRK04266 203 FEILEVVDLEP 213 (226)
T ss_pred CeEEEEEcCCC
Confidence 99999987753
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.82 E-value=0.00012 Score=48.46 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=50.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|++++ -..+|+++++.| +|||++++.+...+.. .+. . .+ .. .....|..+|.++++++||+
T Consensus 76 ~l~~~~~--~~~~l~~~~~~L-kpgG~l~i~~~~~~~~-~~~--~-----~~-----~~-~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 76 VIHHIKD--KMDLFSNISRHL-KDGGHLVLADFIANLL-SAI--E-----HE-----ET-TSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHhCCC--HHHHHHHHHHHc-CCCCEEEEEEcccccC-ccc--c-----cc-----cc-ccccCCHHHHHHHHHHCCCe
Confidence 4566666 468999999999 9999999998753321 110 0 00 00 12256789999999999999
Q ss_pred eeEEEEcC
Q 037161 82 GIRFQCFV 89 (99)
Q Consensus 82 ~~~~~~~~ 89 (99)
+++...+.
T Consensus 139 ~~~~~~~~ 146 (224)
T smart00828 139 VVEGVDAS 146 (224)
T ss_pred EEEeEECc
Confidence 99988764
No 25
>PRK08317 hypothetical protein; Provisional
Probab=97.81 E-value=0.00015 Score=47.76 Aligned_cols=81 Identities=12% Similarity=0.225 Sum_probs=49.5
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCC-CCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELP-ENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~-~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
++|+++| -..+++++++.| +|||.+++.+....... .+............ +... ....++..+|.++++++||
T Consensus 96 ~~~~~~~--~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 96 VLQHLED--PARALAEIARVL-RPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WSDH-FADPWLGRRLPGLFREAGL 169 (241)
T ss_pred hhhccCC--HHHHHHHHHHHh-cCCcEEEEEecCCCceeecCCChHHHHHHHHH--HHhc-CCCCcHHHHHHHHHHHcCC
Confidence 5667776 467899999999 99999999885322110 00000011111111 1111 3345567799999999999
Q ss_pred CeeEEEEc
Q 037161 81 SGIRFQCF 88 (99)
Q Consensus 81 ~~~~~~~~ 88 (99)
+.+++...
T Consensus 170 ~~~~~~~~ 177 (241)
T PRK08317 170 TDIEVEPY 177 (241)
T ss_pred CceeEEEE
Confidence 98876543
No 26
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.76 E-value=0.00017 Score=50.33 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=26.9
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEE
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I 31 (99)
.+|+++++++..+|++++++| +|||.++|
T Consensus 147 ~~~~~~~~e~~~~L~~i~~~L-~pgG~~li 175 (301)
T TIGR03438 147 TIGNFTPEEAVAFLRRIRQLL-GPGGGLLI 175 (301)
T ss_pred cccCCCHHHHHHHHHHHHHhc-CCCCEEEE
Confidence 578899999999999999999 99999886
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.74 E-value=0.0001 Score=54.16 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=53.5
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|.++|++..++|+++++.| +|||++++.|.......... . . .+....|+..+|.++|.++||.
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~L-k~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~~f~~~~~~ 176 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWL-KVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTKVFKECHTR 176 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhc-CCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHHHHHHheec
Confidence 578889998999999999999 99999999998654332110 0 1 1245668899999999999998
Q ss_pred eeEE
Q 037161 82 GIRF 85 (99)
Q Consensus 82 ~~~~ 85 (99)
....
T Consensus 177 ~~~~ 180 (475)
T PLN02336 177 DEDG 180 (475)
T ss_pred cCCC
Confidence 8744
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.70 E-value=9e-05 Score=52.37 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=50.4
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcC---CCceecCHHHHHHHHHHc
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS---PRGKVRTKHEFINLATAA 78 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~---~~g~~rt~~e~~~ll~~a 78 (99)
|||+++|. ..+|+++++.| +|||.++|...... .. .........-.+.-++.. ...+-+|.+|+.++++++
T Consensus 207 vLeHv~d~--~~~L~~l~r~L-kPGG~liist~nr~--~~-~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 207 VIEHVANP--AEFCKSLSALT-IPNGATVLSTINRT--MR-AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HHHhcCCH--HHHHHHHHHHc-CCCcEEEEEECCcC--HH-HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 67888875 57999999999 99999998764211 00 000000000000001111 012467999999999999
Q ss_pred CCCeeEEEEc
Q 037161 79 GFSGIRFQCF 88 (99)
Q Consensus 79 Gf~~~~~~~~ 88 (99)
||+++++..+
T Consensus 281 Gf~i~~~~G~ 290 (322)
T PLN02396 281 SVDVKEMAGF 290 (322)
T ss_pred CCeEEEEeee
Confidence 9999998654
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.69 E-value=6.2e-05 Score=51.12 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=49.1
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCch-hhhhhhhhchHhhhc----CCCceecCHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSA-TSKANSQIDVFMLTH----SPRGKVRTKHEFINLAT 76 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~-~~~~~~~~dl~m~~~----~~~g~~rt~~e~~~ll~ 76 (99)
+||.++|. .++|+++++.| +|||+++|.........-... ...... .+-.+... ..-....+.+++.++|+
T Consensus 121 vl~~~~~~--~~~l~~~~~~L-kpgG~l~i~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~~~l~ 196 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVL-RPGGALSLMFYNANGLLMHNMVAGNFDY-VQAGMPKRKKRTLSPDYPLDPEQVYQWLE 196 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHc-CCCeEEEEEEECccHHHHHHHHccChHH-HHhcCccccccCCCCCCCCCHHHHHHHHH
Confidence 56767664 47899999999 999999987543221000000 000000 00000000 00122467899999999
Q ss_pred HcCCCeeEEEEcCC
Q 037161 77 AAGFSGIRFQCFVC 90 (99)
Q Consensus 77 ~aGf~~~~~~~~~~ 90 (99)
++||+++.+..+..
T Consensus 197 ~aGf~~~~~~gi~~ 210 (255)
T PRK11036 197 EAGWQIMGKTGVRV 210 (255)
T ss_pred HCCCeEeeeeeEEE
Confidence 99999998776543
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.54 E-value=0.00037 Score=47.26 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=44.9
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhh-----hchHh--hhcCCCceecCHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQ-----IDVFM--LTHSPRGKVRTKHEFINL 74 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~-----~dl~m--~~~~~~g~~rt~~e~~~l 74 (99)
++|..+| -.++|+++++.| +|||++++.... ....+........ +.-.+ +....+....+.++|.++
T Consensus 98 ~l~~~~d--~~~~l~~~~~~L-kpgG~l~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 98 ALQWVPE--HADLLVRWVDEL-APGSWIAVQVPG---NFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred hhhhCCC--HHHHHHHHHHhC-CCCcEEEEEcCC---CcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 5676666 367899999999 999999886321 1111100000000 11000 000112345689999999
Q ss_pred HHHcCCCeeEE
Q 037161 75 ATAAGFSGIRF 85 (99)
Q Consensus 75 l~~aGf~~~~~ 85 (99)
|++|||++...
T Consensus 172 l~~aGf~v~~~ 182 (255)
T PRK14103 172 LTDAGCKVDAW 182 (255)
T ss_pred HHhCCCeEEEE
Confidence 99999985443
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.45 E-value=0.0002 Score=49.47 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=52.7
Q ss_pred cccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCe
Q 037161 3 LHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 82 (99)
+.+.+.+.-...+++|.+.| +|||++++.....++.............+.- .+ +++|..-+.+++...++++||++
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~L-kpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k--yi-FPgg~lps~~~~~~~~~~~~l~v 212 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLL-KPGGRLVLQTITHRDPPYHAERRSSSDFIRK--YI-FPGGYLPSLSEILRAAEDAGLEV 212 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHS-ETTEEEEEEEEEE--HHHHHCTTCCCHHHHH--HT-STTS---BHHHHHHHHHHTT-EE
T ss_pred hhhcChhHHHHHHHHHHHhc-CCCcEEEEEecccccccchhhcCCCceEEEE--ee-CCCCCCCCHHHHHHHHhcCCEEE
Confidence 44556677789999999999 9999999988776654211000000012222 22 35899999999999999999999
Q ss_pred eEEEEcC
Q 037161 83 IRFQCFV 89 (99)
Q Consensus 83 ~~~~~~~ 89 (99)
..+...+
T Consensus 213 ~~~~~~~ 219 (273)
T PF02353_consen 213 EDVENLG 219 (273)
T ss_dssp EEEEE-H
T ss_pred EEEEEcC
Confidence 9887653
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.43 E-value=0.0014 Score=43.02 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=47.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|.+++++...++++++++| +|||++++++.+-+++...+ . . --...+.+|+.++++ ||+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~L-kpgG~~~~~~~~~~~~~~~~------~--~--------~~~~~~~~el~~~~~--~~~ 164 (197)
T PRK11207 104 VLMFLEAKTIPGLIANMQRCT-KPGGYNLIVAAMDTADYPCT------V--G--------FPFAFKEGELRRYYE--GWE 164 (197)
T ss_pred chhhCCHHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCCCCC------C--C--------CCCccCHHHHHHHhC--CCe
Confidence 568788889999999999999 99999888776544331100 0 0 012357788888887 898
Q ss_pred eeEEE
Q 037161 82 GIRFQ 86 (99)
Q Consensus 82 ~~~~~ 86 (99)
++...
T Consensus 165 ~~~~~ 169 (197)
T PRK11207 165 MVKYN 169 (197)
T ss_pred EEEee
Confidence 87763
No 33
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.32 E-value=0.00071 Score=46.62 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=49.2
Q ss_pred cccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCC-CCCchhhh-------------hhhhhchHhhhcCCCceecCH
Q 037161 3 LHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL-PENSATSK-------------ANSQIDVFMLTHSPRGKVRTK 68 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~-~~~~~~~~-------------~~~~~dl~m~~~~~~g~~rt~ 68 (99)
+-+|+| ..+.|+.++++| +||||+.++|+--.+. .-...+.+ ......-+.|+.. =-+--+.
T Consensus 187 IRN~th--~~k~l~EAYRVL-KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~q 262 (296)
T KOG1540|consen 187 IRNVTH--IQKALREAYRVL-KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQ 262 (296)
T ss_pred eecCCC--HHHHHHHHHHhc-CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCH
Confidence 356777 789999999999 9999999999754331 11000000 0000111122221 1234567
Q ss_pred HHHHHHHHHcCCCeeE
Q 037161 69 HEFINLATAAGFSGIR 84 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~~ 84 (99)
+|+..+.++|||..+.
T Consensus 263 e~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 263 EEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHHcCCcccc
Confidence 8999999999999997
No 34
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.32 E-value=0.00032 Score=48.36 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=44.5
Q ss_pred ccccCCh-HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 2 ILHAWSD-EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 2 vlHdw~d-~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
|||..+| ++...+++..+++| +|||.|+|....-+.. +... ....++.--.. ..+..||.+|+.++|. ||
T Consensus 159 vLh~v~D~~dp~~iv~~l~d~l-apGS~L~ish~t~d~~--p~~~---~~~~~~~~~~~-~~~~~Rs~~ei~~~f~--g~ 229 (267)
T PF04672_consen 159 VLHFVPDDDDPAGIVARLRDAL-APGSYLAISHATDDGA--PERA---EALEAVYAQAG-SPGRPRSREEIAAFFD--GL 229 (267)
T ss_dssp -GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-TTS--HHHH---HHHHHHHHHCC-S----B-HHHHHHCCT--TS
T ss_pred eeccCCCccCHHHHHHHHHHhC-CCCceEEEEecCCCCC--HHHH---HHHHHHHHcCC-CCceecCHHHHHHHcC--CC
Confidence 7888877 78999999999999 9999999987764432 1111 12222222223 3689999999999998 88
Q ss_pred CeeE
Q 037161 81 SGIR 84 (99)
Q Consensus 81 ~~~~ 84 (99)
+.+.
T Consensus 230 elve 233 (267)
T PF04672_consen 230 ELVE 233 (267)
T ss_dssp EE-T
T ss_pred ccCC
Confidence 7764
No 35
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.27 E-value=0.001 Score=44.29 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=46.0
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhh--hhhchHhhhc--CCCceecCHHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKAN--SQIDVFMLTH--SPRGKVRTKHEFINLATA 77 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~--~~~dl~m~~~--~~~g~~rt~~e~~~ll~~ 77 (99)
++++.++ ...+|+++.+.| +|||++++...- . ......... ...-+..... ...++..+..+|.++++.
T Consensus 123 ~l~~~~~--~~~~l~~~~~~L-~~gG~l~v~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (233)
T PRK05134 123 MLEHVPD--PASFVRACAKLV-KPGGLVFFSTLN---R-NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQ 195 (233)
T ss_pred HhhccCC--HHHHHHHHHHHc-CCCcEEEEEecC---C-ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHH
Confidence 3555555 457899999999 999998876431 1 111000000 0000011100 012345588999999999
Q ss_pred cCCCeeEEEE
Q 037161 78 AGFSGIRFQC 87 (99)
Q Consensus 78 aGf~~~~~~~ 87 (99)
+||+++....
T Consensus 196 ~Gf~~v~~~~ 205 (233)
T PRK05134 196 AGLEVQDITG 205 (233)
T ss_pred CCCeEeeeee
Confidence 9999998754
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.24 E-value=0.003 Score=41.36 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=47.0
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|..++++...+++++++.| +|||+++|++...++.. +.. .. .....+.+|..++|+ +|+
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~L-kpgG~lli~~~~~~~~~-~~~-------~~--------~~~~~~~~el~~~f~--~~~ 163 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHT-RPGGYNLIVAAMDTADY-PCH-------MP--------FSFTFKEDELRQYYA--DWE 163 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEecccCCC-CCC-------CC--------cCccCCHHHHHHHhC--CCe
Confidence 578888888999999999999 99999888876543221 100 00 112467888888886 588
Q ss_pred eeEEE
Q 037161 82 GIRFQ 86 (99)
Q Consensus 82 ~~~~~ 86 (99)
+....
T Consensus 164 ~~~~~ 168 (195)
T TIGR00477 164 LLKYN 168 (195)
T ss_pred EEEee
Confidence 87765
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.13 E-value=0.0013 Score=43.46 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=46.5
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhh----c--CCCceecCHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLT----H--SPRGKVRTKHEFINLA 75 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~----~--~~~g~~rt~~e~~~ll 75 (99)
++|...+ ...+|+++++.| +|||.+++.+.. .+. .. ......+-.+.. . .......+..++.+++
T Consensus 121 ~l~~~~~--~~~~l~~~~~~L-~~gG~l~i~~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 121 VLEHVPD--PQAFIRACAQLL-KPGGILFFSTIN-RTP-KS----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HHHhCCC--HHHHHHHHHHhc-CCCcEEEEEecC-CCc-hH----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 3555655 457999999999 999998886542 111 01 000111111110 0 0012345788999999
Q ss_pred HHcCCCeeEEEEc
Q 037161 76 TAAGFSGIRFQCF 88 (99)
Q Consensus 76 ~~aGf~~~~~~~~ 88 (99)
+++||+++++...
T Consensus 192 ~~~G~~i~~~~~~ 204 (224)
T TIGR01983 192 ESAGLRVKDVKGL 204 (224)
T ss_pred HHcCCeeeeeeeE
Confidence 9999999887643
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.0021 Score=44.74 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=58.7
Q ss_pred cccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCe
Q 037161 3 LHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 82 (99)
+++...+.-...++++++.| +|||+++++....++.+... ...+.+= . .++||...|..+.....+++||.+
T Consensus 147 fEhvg~~~~~~ff~~~~~~L-~~~G~~llh~I~~~~~~~~~----~~~~i~~--y-iFPgG~lPs~~~i~~~~~~~~~~v 218 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALL-KPGGRMLLHSITGPDQEFRR----FPDFIDK--Y-IFPGGELPSISEILELASEAGFVV 218 (283)
T ss_pred HHHhCcccHHHHHHHHHhhc-CCCceEEEEEecCCCccccc----chHHHHH--h-CCCCCcCCCHHHHHHHHHhcCcEE
Confidence 34555566678999999999 99999999998777654311 1112221 1 246999999999999999999999
Q ss_pred eEEEEcC
Q 037161 83 IRFQCFV 89 (99)
Q Consensus 83 ~~~~~~~ 89 (99)
.....++
T Consensus 219 ~~~~~~~ 225 (283)
T COG2230 219 LDVESLR 225 (283)
T ss_pred ehHhhhc
Confidence 8877654
No 39
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.002 Score=44.01 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=56.8
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCce--ecCHHHHHHHHHHcC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGK--VRTKHEFINLATAAG 79 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--~rt~~e~~~ll~~aG 79 (99)
||-.-+.++-...++|+++.| +|||.|+.-|+-..+-..-. ......++.+..+-.+|.+ -.+.++..+|++.||
T Consensus 153 vLSAi~pek~~~a~~nl~~ll-KPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLL-KPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHh-CCCcEEEEeecccchHHHHh--ccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence 344556788899999999999 99999999998655431110 0112345555555443332 468999999999999
Q ss_pred CCeeEE
Q 037161 80 FSGIRF 85 (99)
Q Consensus 80 f~~~~~ 85 (99)
|..++.
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 998775
No 40
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.88 E-value=0.0047 Score=40.87 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=47.5
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHh--hh---cCCCceecCHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFM--LT---HSPRGKVRTKHEFINLAT 76 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m--~~---~~~~g~~rt~~e~~~ll~ 76 (99)
++|+|++++...+++++.+.+ ++ +.++.. .+.. +. . ..+.... +. ........+..+|.++++
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~-~~-~~~i~~---~~~~--~~-~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLT-RG-SLIFTF---APYT--PL-L----ALLHWIGGLFPGPSRTTRIYPHREKGIRRALA 203 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhc-CC-eEEEEE---CCcc--HH-H----HHHHHhccccCCccCCCCccccCHHHHHHHHH
Confidence 578899999999999999866 43 333322 1211 10 0 1111100 00 011234568899999999
Q ss_pred HcCCCeeEEEEcCC
Q 037161 77 AAGFSGIRFQCFVC 90 (99)
Q Consensus 77 ~aGf~~~~~~~~~~ 90 (99)
++||++.++.++..
T Consensus 204 ~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 204 AAGFKVVRTERISS 217 (230)
T ss_pred HCCCceEeeeeccc
Confidence 99999999987653
No 41
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.78 E-value=0.0044 Score=43.78 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=44.1
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcC---CCceecCHHHHHHHHHHc
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS---PRGKVRTKHEFINLATAA 78 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~---~~g~~rt~~e~~~ll~~a 78 (99)
++|+++++....+++++.+ + .+ |+++|. ..+... ........-. .+... .....++.++++++|+++
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l-~~-g~liIs--~~p~~~---~~~~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~~A 290 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-L-AE-KRLIIS--FAPKTL---YYDILKRIGE--LFPGPSKATRAYLHAEADVERALKKA 290 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-h-cC-CEEEEE--eCCcch---HHHHHHHHHh--hcCCCCcCceeeeCCHHHHHHHHHHC
Confidence 5778999888889988885 5 44 445442 222211 0100000001 11000 012234899999999999
Q ss_pred CCCeeEEEEcC
Q 037161 79 GFSGIRFQCFV 89 (99)
Q Consensus 79 Gf~~~~~~~~~ 89 (99)
||++....-..
T Consensus 291 Gf~v~~~~~~~ 301 (315)
T PLN02585 291 GWKVARREMTA 301 (315)
T ss_pred CCEEEEEEEee
Confidence 99998766544
No 42
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.71 E-value=0.01 Score=39.92 Aligned_cols=78 Identities=22% Similarity=0.151 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
-++.++.|+++.+.| +|||+++.+|.+..+-..-. --.....|=.--..+ .|-..|.+ --+.|+.|.|+..+-.+
T Consensus 158 ve~~~k~L~e~~rlL-RpgG~iifiEHva~~y~~~n--~i~q~v~ep~~~~~~-dGC~ltrd-~~e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLL-RPGGRIIFIEHVAGEYGFWN--RILQQVAEPLWHLES-DGCVLTRD-TGELLEDAEFSIDSCKR 232 (252)
T ss_pred cCCHHHHHHHHHHhc-CCCcEEEEEecccccchHHH--HHHHHHhchhhheec-cceEEehh-HHHHhhhcccccchhhc
Confidence 355899999999999 99999999999876542210 001111121111123 67777774 45678899999998877
Q ss_pred cCC
Q 037161 88 FVC 90 (99)
Q Consensus 88 ~~~ 90 (99)
...
T Consensus 233 ~~~ 235 (252)
T KOG4300|consen 233 FNF 235 (252)
T ss_pred ccC
Confidence 653
No 43
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.70 E-value=0.023 Score=36.48 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEcCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
..++|+++.+.| +|||++++++.... ...++.++++++||+...+...+-
T Consensus 119 ~~~~l~~~~~~L-k~gG~~~~~~~~~~-----------------------------~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 119 IDRFLDELPEIL-KEGGRVQLIQSSLN-----------------------------GEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHHHHhHHHhh-CCCCEEEEEEeccC-----------------------------ChHHHHHHHHhCCCeEEEEEEeec
Confidence 467899999999 99999999763211 146788999999999999988877
Q ss_pred CeeEEEEEC
Q 037161 91 NSWVMEFYK 99 (99)
Q Consensus 91 ~~~vie~~k 99 (99)
++--++++|
T Consensus 169 ~~~~~~~~~ 177 (179)
T TIGR00537 169 FFEELFAIK 177 (179)
T ss_pred CceEEEEEE
Confidence 776666654
No 44
>PRK06202 hypothetical protein; Provisional
Probab=96.68 E-value=0.0072 Score=40.37 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=48.8
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhh------hcCC----CceecCHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFML------THSP----RGKVRTKHEF 71 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~------~~~~----~g~~rt~~e~ 71 (99)
+||+.+|++..++|+++++.+ + |.++|.|...+.. . + ......... ...+ --+-+|.+|+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~-~--~~~~i~dl~~~~~--~--~---~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALA-R--RLVLHNDLIRSRL--A--Y---ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred eeecCChHHHHHHHHHHHHhc-C--eeEEEeccccCHH--H--H---HHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 789999998899999999998 5 5566655443311 0 0 001111100 0010 1246789999
Q ss_pred HHHHHHcCCCeeEEEEc
Q 037161 72 INLATAAGFSGIRFQCF 88 (99)
Q Consensus 72 ~~ll~~aGf~~~~~~~~ 88 (99)
.+++++ ||++....++
T Consensus 208 ~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 208 AALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHhhC-CCeEEeccce
Confidence 999999 9999887766
No 45
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.64 E-value=0.0023 Score=43.95 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.0
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
||||.+++++..+++++++++| +|||.+++-..
T Consensus 211 nvl~yf~~~~~~~~l~~l~~~L-~pGG~L~lg~~ 243 (264)
T smart00138 211 NVLIYFDEPTQRKLLNRFAEAL-KPGGYLFLGHS 243 (264)
T ss_pred hhHHhCCHHHHHHHHHHHHHHh-CCCeEEEEECc
Confidence 5899999999999999999999 99999998553
No 46
>PRK06922 hypothetical protein; Provisional
Probab=96.62 E-value=0.0026 Score=48.94 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEeeecCCC
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL 39 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~ 39 (99)
++++..++|++++++| +|||+++|.|.+.++.
T Consensus 512 ~~edl~kiLreI~RVL-KPGGrLII~D~v~~E~ 543 (677)
T PRK06922 512 NHEVIKKGLQSAYEVL-KPGGRIIIRDGIMTED 543 (677)
T ss_pred cHHHHHHHHHHHHHHc-CCCcEEEEEeCccCCc
Confidence 4678999999999999 9999999999876654
No 47
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.55 E-value=0.024 Score=39.88 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=51.4
Q ss_pred cCChHHHHH-HHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCc-----eecCHHHHHHHHHHc
Q 037161 5 AWSDEHCLK-LLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRG-----KVRTKHEFINLATAA 78 (99)
Q Consensus 5 dw~d~~~~~-iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g-----~~rt~~e~~~ll~~a 78 (99)
.++|.+.++ -|+.++.++ .|||.|+---....+.- -+..-.+. ++.+| +.||..|..+|+++|
T Consensus 221 lF~Dn~lv~~sl~gl~~al-~pgG~lIyTgQPwHPQl---------e~IAr~Lt-sHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 221 LFPDNDLVRRSLAGLARAL-EPGGYLIYTGQPWHPQL---------EMIARVLT-SHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred hCCcHHHHHHHHHHHHHHh-CCCcEEEEcCCCCCcch---------HHHHHHHh-cccCCCceEEEecCHHHHHHHHHHc
Confidence 467867444 799999999 99997665322111110 01111111 11122 689999999999999
Q ss_pred CCCeeEEEE-cCCCeeEEEEEC
Q 037161 79 GFSGIRFQC-FVCNSWVMEFYK 99 (99)
Q Consensus 79 Gf~~~~~~~-~~~~~~vie~~k 99 (99)
||+.++..- -.+-++|--|+|
T Consensus 290 GF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 290 GFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred CCchhhheeccCCceEEEeecC
Confidence 999766542 235566666554
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.47 E-value=0.016 Score=41.95 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=53.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++++.+++.-..+++++++.| +|||++++.+...+...... ...++- .. +++|...+.+++...++ .||.
T Consensus 237 ~~ehvg~~~~~~~l~~i~r~L-kpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~~~-~~~~ 306 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVRRCL-KPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQASE-GLFV 306 (383)
T ss_pred chhhCChHHHHHHHHHHHHHc-CCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHHHH-CCcE
Confidence 356667777788999999999 99999999876544332111 011111 22 24788888999888866 5899
Q ss_pred eeEEEEcC
Q 037161 82 GIRFQCFV 89 (99)
Q Consensus 82 ~~~~~~~~ 89 (99)
+..+..++
T Consensus 307 v~d~~~~~ 314 (383)
T PRK11705 307 MEDWHNFG 314 (383)
T ss_pred EEEEecCh
Confidence 88877654
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.37 E-value=0.016 Score=38.35 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=46.5
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhh--cCCCceecCHHHHHHHHHHcC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLT--HSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~--~~~~g~~rt~~e~~~ll~~aG 79 (99)
++|.+++++..++++++++.+ ++++ ++. . .+.. .. .. ....+.-.... ....-..++.+++.++++++|
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~-~~~~-~i~--~-~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 198 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLT-KERV-IFT--F-APKT--AW-LA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELG 198 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHh-CCCE-EEE--E-CCCc--hH-HH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcC
Confidence 467788888889999999887 6542 222 2 1211 10 10 00011111000 001234679999999999999
Q ss_pred CCeeEEEEcC
Q 037161 80 FSGIRFQCFV 89 (99)
Q Consensus 80 f~~~~~~~~~ 89 (99)
|+++......
T Consensus 199 f~v~~~~~~~ 208 (219)
T TIGR02021 199 WKIVREGLVS 208 (219)
T ss_pred ceeeeeeccc
Confidence 9999887654
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.29 E-value=0.027 Score=38.99 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=46.7
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|..++++...+++++++.| +|||.+++++.+-.+....+ . ......+.+|+.++++. |+
T Consensus 193 vl~~l~~~~~~~~l~~~~~~L-kpgG~~l~v~~~~~~~~~~~--------~--------p~~~~~~~~el~~~~~~--~~ 253 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHT-NPGGYNLIVCAMDTEDYPCP--------M--------PFSFTFKEGELKDYYQD--WE 253 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhc-CCCcEEEEEEecccccCCCC--------C--------CCCcccCHHHHHHHhCC--CE
Confidence 578788888999999999999 99999888776543321100 0 01234668889888864 88
Q ss_pred eeEEE
Q 037161 82 GIRFQ 86 (99)
Q Consensus 82 ~~~~~ 86 (99)
+++..
T Consensus 254 i~~~~ 258 (287)
T PRK12335 254 IVKYN 258 (287)
T ss_pred EEEEe
Confidence 88764
No 51
>PTZ00146 fibrillarin; Provisional
Probab=96.10 E-value=0.047 Score=38.31 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=44.0
Q ss_pred ccccCChH-HHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 2 ILHAWSDE-HCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 2 vlHdw~d~-~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
|++|..+. +...++.+++..| +|||+++|.-..-.-+..+ ...++=.+|. ++|+++||
T Consensus 206 V~~Dva~pdq~~il~~na~r~L-KpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF 264 (293)
T PTZ00146 206 IFADVAQPDQARIVALNAQYFL-KNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGL 264 (293)
T ss_pred EEEeCCCcchHHHHHHHHHHhc-cCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCC
Confidence 45655433 4556667899999 9999999931111101001 1111111344 88999999
Q ss_pred CeeEEEEcCC---CeeEEEE
Q 037161 81 SGIRFQCFVC---NSWVMEF 97 (99)
Q Consensus 81 ~~~~~~~~~~---~~~vie~ 97 (99)
+.++...+.. .++++.+
T Consensus 265 ~~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 265 KPKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred ceEEEEecCCccCCcEEEEE
Confidence 9999887753 4455543
No 52
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.91 E-value=0.0032 Score=39.36 Aligned_cols=70 Identities=26% Similarity=0.290 Sum_probs=42.2
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhh-hhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKAN-SQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~-~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
++|+.++. ..+|+++.+.| +++|++++.+....+.-......... ..-+..+. ..+. +.++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~l-k~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLL-KPGGILIISDPNHNDELPEQLEELMNLYSEVWSMI---YIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHE-EEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHC---C-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHc-CCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhh---hccc--CHHHHHHHHHhcC
Confidence 46777774 58899999999 99999999998732211010000000 11111111 1122 7889999999998
No 53
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.82 E-value=0.011 Score=41.21 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=28.7
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
|||..++++.-.+++++++++| +|||.|++-.
T Consensus 231 NvliyF~~~~~~~vl~~l~~~L-~pgG~L~lG~ 262 (287)
T PRK10611 231 NVMIYFDKTTQERILRRFVPLL-KPDGLLFAGH 262 (287)
T ss_pred hHHhcCCHHHHHHHHHHHHHHh-CCCcEEEEeC
Confidence 5888999999999999999999 9999887743
No 54
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.77 E-value=0.13 Score=34.87 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
.+....+++++.+.| +|||++++.+...+ ..+++.+.+++.||++.++..
T Consensus 189 ~~~~~~l~~~~~~~L-kpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 ANPLLELAPDLARLL-KPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 344567888999999 99999888543211 245778899999999998877
Q ss_pred cCCCeeEE
Q 037161 88 FVCNSWVM 95 (99)
Q Consensus 88 ~~~~~~vi 95 (99)
.+...+++
T Consensus 239 ~~~W~~~~ 246 (250)
T PRK00517 239 RGEWVALV 246 (250)
T ss_pred eCCEEEEE
Confidence 65555543
No 55
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.75 E-value=0.062 Score=37.99 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchh--hhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSAT--SKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~--~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
-...|+.++++| +|||.+++--.+++.+...... .+++ . |-+ -=..-|..-...|++.+||+.+++..+
T Consensus 198 Pl~~L~~Lk~~L-~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~-m~n--v~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 198 PLDHLKQLKDSL-RPGGELVLETLVIDGDENTVLVPEDRYA-----K-MRN--VWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHHHHHhh-CCCCEEEEEEeeecCCCceEEccCCccc-----C-CCc--eEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 467899999999 9999887755566654321111 1111 1 111 123458999999999999999999865
No 56
>PLN03075 nicotianamine synthase; Provisional
Probab=95.67 E-value=0.012 Score=41.36 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=27.4
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
+||+|+.++-.++|+++++.| +|||.+++-
T Consensus 203 ALi~~dk~~k~~vL~~l~~~L-kPGG~Lvlr 232 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHM-APGALLMLR 232 (296)
T ss_pred cccccccccHHHHHHHHHHhc-CCCcEEEEe
Confidence 689999889999999999999 999988874
No 57
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.55 E-value=0.0045 Score=37.34 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=38.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHH--cCCCe
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATA--AGFSG 82 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~--aGf~~ 82 (99)
+|.|+-..++++++++.| +|||.+++ |+- + -.. +.+... ..-.+..+. ..-.-..+++.+.|.+ .||+.
T Consensus 17 n~GD~Gl~~~f~~~~~~L-~pGG~lil-EpQ---~-w~s-Y~~~~~-~~~~~~~n~-~~i~lrP~~F~~~L~~~evGF~~ 87 (110)
T PF06859_consen 17 NWGDEGLKRFFRRIYSLL-RPGGILIL-EPQ---P-WKS-YKKAKR-LSEEIRENY-KSIKLRPDQFEDYLLEPEVGFSS 87 (110)
T ss_dssp HHHHHHHHHHHHHHHHHE-EEEEEEEE-E-------HHH-HHTTTT-S-HHHHHHH-HH----GGGHHHHHTSTTT---E
T ss_pred cCcCHHHHHHHHHHHHhh-CCCCEEEE-eCC---C-cHH-HHHHhh-hhHHHHhHH-hceEEChHHHHHHHHhcccceEE
Confidence 789999999999999999 99886655 532 1 000 000000 000111111 2233345578898887 59999
Q ss_pred eEEEEc
Q 037161 83 IRFQCF 88 (99)
Q Consensus 83 ~~~~~~ 88 (99)
.+....
T Consensus 88 ~e~~~~ 93 (110)
T PF06859_consen 88 VEELGV 93 (110)
T ss_dssp EEEE--
T ss_pred EEEccc
Confidence 876554
No 58
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.53 E-value=0.048 Score=37.70 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCC------CCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeE
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPEL------PENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~------~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
-..+|+.++++| +|+|++++. .++|=. +.....+ ...++ ..+.+-|=..+.+.+.|+.+||++++
T Consensus 167 P~~LL~~i~~~l-~p~G~lilA-vVlP~~pyVE~~~g~~~~P--~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 167 PLTLLRDIRRAL-KPNGRLILA-VVLPFRPYVEFGGGKSNRP--SELLP-----VKGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE-EEecccccEEcCCCCCCCc--hhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 468999999999 999888774 344421 1000000 01112 12122233334455789999999999
Q ss_pred EEEcC
Q 037161 85 FQCFV 89 (99)
Q Consensus 85 ~~~~~ 89 (99)
..+++
T Consensus 238 ~tr~P 242 (265)
T PF05219_consen 238 WTRLP 242 (265)
T ss_pred EeccC
Confidence 98875
No 59
>PRK05785 hypothetical protein; Provisional
Probab=95.40 E-value=0.14 Score=34.33 Aligned_cols=92 Identities=8% Similarity=-0.060 Sum_probs=51.7
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCc-hhhh-hhhhhchHhhhcCCCce-----------ecCH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENS-ATSK-ANSQIDVFMLTHSPRGK-----------VRTK 68 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~-~~~~-~~~~~dl~m~~~~~~g~-----------~rt~ 68 (99)
.||+++| -.+.|++++++| +| .+.|+|...|+..... .... ........-.....+.. -.+.
T Consensus 119 ~l~~~~d--~~~~l~e~~RvL-kp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~ 193 (226)
T PRK05785 119 ALHASDN--IEKVIAEFTRVS-RK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTN 193 (226)
T ss_pred hhhccCC--HHHHHHHHHHHh-cC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCH
Confidence 4788877 467999999999 88 4567776544321100 0000 00011111111111122 2377
Q ss_pred HHHHHHHHHcCCCeeEEEEcC-CCeeEEEEEC
Q 037161 69 HEFINLATAAGFSGIRFQCFV-CNSWVMEFYK 99 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 99 (99)
+++.++++++| ..++...+. +..++..+.|
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 194 SFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 89999999984 667777764 5566776665
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.30 E-value=0.072 Score=35.04 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=44.4
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|..+| -.++|+++++.| +|||.+++.+...+.. . ..... .... +....+..+|.+++..+ |+
T Consensus 107 ~l~~~~~--~~~~l~~~~~~L-~~~G~l~~~~~~~~~~-----~----~~~~~--~~~~-~~~~~~~~~~~~~l~~~-f~ 170 (240)
T TIGR02072 107 ALQWCDD--LSQALSELARVL-KPGGLLAFSTFGPGTL-----H----ELRQS--FGQH-GLRYLSLDELKALLKNS-FE 170 (240)
T ss_pred hhhhccC--HHHHHHHHHHHc-CCCcEEEEEeCCccCH-----H----HHHHH--HHHh-ccCCCCHHHHHHHHHHh-cC
Confidence 3444444 567999999999 9999999875432211 0 01111 0101 45667899999999998 88
Q ss_pred eeEEE
Q 037161 82 GIRFQ 86 (99)
Q Consensus 82 ~~~~~ 86 (99)
.+.+.
T Consensus 171 ~~~~~ 175 (240)
T TIGR02072 171 LLTLE 175 (240)
T ss_pred CcEEE
Confidence 77654
No 61
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.09 E-value=0.028 Score=32.83 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEe
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
++..++|+++++.| +|||+++|.+
T Consensus 88 ~~~~~~l~~~~~~L-~pgG~lvi~~ 111 (112)
T PF12847_consen 88 DERRRVLERIRRLL-KPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHHE-EEEEEEEEEE
T ss_pred hHHHHHHHHHHHhc-CCCcEEEEEE
Confidence 68899999999999 9999999865
No 62
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.97 E-value=0.11 Score=34.73 Aligned_cols=64 Identities=17% Similarity=0.069 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
...+.++-+.++++| +|||.++|.|.......... |-. .-.-++..-..+-.+.+||+..--..
T Consensus 142 ~~~A~~vna~vf~~L-KPGGv~~V~dH~a~pG~~~~---------dt~------~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 142 PATAAKVNAAVFKAL-KPGGVYLVEDHRADPGSGLS---------DTI------TLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cchHHHHHHHHHHhc-CCCcEEEEEeccccCCCChh---------hhh------hhcccChHHHHHHHHhhcceeeeeeh
Confidence 556888999999999 99999999999877653221 110 11223455677888999999875543
No 63
>PRK14968 putative methyltransferase; Provisional
Probab=94.92 E-value=0.41 Score=30.39 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEcC-
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCFV- 89 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~- 89 (99)
...+++++.+.| +|||.+++.-. .. ...+++.++++++||++..+....
T Consensus 127 ~~~~i~~~~~~L-k~gG~~~~~~~---~~--------------------------~~~~~l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 127 IDRFLDEVGRYL-KPGGRILLLQS---SL--------------------------TGEDEVLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred HHHHHHHHHHhc-CCCeEEEEEEc---cc--------------------------CCHHHHHHHHHHCCCeeeeeeeccc
Confidence 467899999999 99998887531 00 012467889999999988775442
Q ss_pred --CCeeEEEEEC
Q 037161 90 --CNSWVMEFYK 99 (99)
Q Consensus 90 --~~~~vie~~k 99 (99)
....+++++|
T Consensus 177 ~~~~~~~~~~~~ 188 (188)
T PRK14968 177 PFEELIVLELVK 188 (188)
T ss_pred CCceEEEEEEeC
Confidence 2234444443
No 64
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.69 E-value=0.023 Score=37.59 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=27.9
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
|||-.++++...+++++++++| +|||-|++-.
T Consensus 144 NVlIYF~~~~~~~vl~~l~~~L-~pgG~L~lG~ 175 (196)
T PF01739_consen 144 NVLIYFDPETQQRVLRRLHRSL-KPGGYLFLGH 175 (196)
T ss_dssp SSGGGS-HHHHHHHHHHHGGGE-EEEEEEEE-T
T ss_pred CEEEEeCHHHHHHHHHHHHHHc-CCCCEEEEec
Confidence 6888999999999999999999 9999998854
No 65
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=94.47 E-value=0.18 Score=34.08 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=41.0
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhh-----hhchHhhhcC-CCceecCHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANS-----QIDVFMLTHS-PRGKVRTKHEFINLA 75 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~-----~~dl~m~~~~-~~g~~rt~~e~~~ll 75 (99)
++|..+| -.++|++++++| +|||++++. .++....+....... -+...+.... ..+..-+..++.+++
T Consensus 102 ~l~~~~d--~~~~l~~~~~~L-kpgG~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l 175 (258)
T PRK01683 102 SLQWLPD--HLELFPRLVSLL-APGGVLAVQ---MPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDAL 175 (258)
T ss_pred ChhhCCC--HHHHHHHHHHhc-CCCcEEEEE---CCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHH
Confidence 4555555 468999999999 999998884 232211110000000 0010110000 012345678999999
Q ss_pred HHcCCCe
Q 037161 76 TAAGFSG 82 (99)
Q Consensus 76 ~~aGf~~ 82 (99)
.++|+.+
T Consensus 176 ~~~g~~v 182 (258)
T PRK01683 176 APAACRV 182 (258)
T ss_pred HhCCCce
Confidence 9999864
No 66
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.17 E-value=0.045 Score=37.38 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=50.1
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchH---hhhc---CCCceecCHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVF---MLTH---SPRGKVRTKHEFINLA 75 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~---m~~~---~~~g~~rt~~e~~~ll 75 (99)
||++.+|++. ++++|.+-+ +|||.+++..... . . .+.+...+... -++. .+-++-...+|...++
T Consensus 133 VlEHv~dp~~--~~~~c~~lv-kP~G~lf~STinr--t--~--ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~ 203 (243)
T COG2227 133 VLEHVPDPES--FLRACAKLV-KPGGILFLSTINR--T--L--KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWL 203 (243)
T ss_pred HHHccCCHHH--HHHHHHHHc-CCCcEEEEecccc--C--H--HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhc
Confidence 6788888665 999999999 9999888765431 1 1 11111111110 0111 1124566788999999
Q ss_pred HHcCCCeeEEEEc
Q 037161 76 TAAGFSGIRFQCF 88 (99)
Q Consensus 76 ~~aGf~~~~~~~~ 88 (99)
..+||+......+
T Consensus 204 ~~~~~~~~~~~g~ 216 (243)
T COG2227 204 LGANLKIIDRKGL 216 (243)
T ss_pred ccCCceEEeecce
Confidence 9999999887654
No 67
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.16 E-value=0.32 Score=32.79 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhccCCCce-----EEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCe
Q 037161 8 DEHCLKLLKNCYESINKEDGK-----LIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~-----l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 82 (99)
..+--++|+++++-| +|+|. |+|+ +|.+. ..|++--+.+.|.++++.-||..
T Consensus 120 p~~RG~Ml~r~~~fL-~~~g~~~~~~LFlV---lP~~C-------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFL-KPPGLSLFPSLFLV---LPLPC-------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHHh-CCCCccCcceEEEE---eCchH-------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 445678999999999 88888 6663 44321 12788889999999999999999
Q ss_pred eEEEEcC
Q 037161 83 IRFQCFV 89 (99)
Q Consensus 83 ~~~~~~~ 89 (99)
++.+...
T Consensus 177 ~~~~~~~ 183 (219)
T PF11968_consen 177 VKYKKSK 183 (219)
T ss_pred EEEEecC
Confidence 9987654
No 68
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.01 E-value=0.17 Score=34.06 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEcCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
....|+.+.+.| +|||.|.|.|.. +++ + +.++|.+.++..||+...-.....
T Consensus 137 ~~~fi~EA~RvL-K~~G~L~IAEV~----------SRf----~-------------~~~~F~~~~~~~GF~~~~~d~~n~ 188 (219)
T PF05148_consen 137 WPDFIREANRVL-KPGGILKIAEVK----------SRF----E-------------NVKQFIKALKKLGFKLKSKDESNK 188 (219)
T ss_dssp HHHHHHHHHHHE-EEEEEEEEEEEG----------GG-----S--------------HHHHHHHHHCTTEEEEEEE--ST
T ss_pred cHHHHHHHHhee-ccCcEEEEEEec----------ccC----c-------------CHHHHHHHHHHCCCeEEecccCCC
Confidence 456899999999 999999999842 111 1 467899999999999998655566
Q ss_pred CeeEEEEEC
Q 037161 91 NSWVMEFYK 99 (99)
Q Consensus 91 ~~~vie~~k 99 (99)
.+.+++.+|
T Consensus 189 ~F~~f~F~K 197 (219)
T PF05148_consen 189 HFVLFEFKK 197 (219)
T ss_dssp TEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 778887765
No 69
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.82 E-value=0.11 Score=36.90 Aligned_cols=33 Identities=6% Similarity=0.263 Sum_probs=28.8
Q ss_pred ccccCChHHHHHHHHHHHH-hccCCCceEEE-Eeee
Q 037161 2 ILHAWSDEHCLKLLKNCYE-SINKEDGKLIV-VEAV 35 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~-al~~pgg~l~I-~e~~ 35 (99)
.+.|++++++..+|+++++ .| .||+.++| +|..
T Consensus 166 siGNf~~~ea~~fL~~~~~~~l-~~~d~lLiG~D~~ 200 (319)
T TIGR03439 166 SIGNFSRPEAAAFLAGFLATAL-SPSDSFLIGLDGC 200 (319)
T ss_pred cccCCCHHHHHHHHHHHHHhhC-CCCCEEEEecCCC
Confidence 5789999999999999999 99 99988888 5554
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=93.65 E-value=0.37 Score=31.03 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
...+++.+++.| +|||++++..... -+.++..++++++||+.+++..
T Consensus 110 ~~~~l~~~~~~L-k~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 110 LTAIIDWSLAHL-HPGGRLVLTFILL-----------------------------ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred HHHHHHHHHHhc-CCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCCCCcceEEE
Confidence 456888899999 9999887743210 0134667788899988777643
No 71
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.64 E-value=0.33 Score=32.65 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCe
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 82 (99)
..++|+++++.| +|||.+++.......-+ .....+...-.... ...-.+.+++.+++...|++.
T Consensus 119 ~~~~l~~~~~~L-k~gG~l~~~~~~~~~~~------el~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 119 LSTALRELYRVV-RPGGVVAFTTLVQGSLP------ELHQAWQAVDERPH-ANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHHHHHHc-CCCeEEEEEeCCCCchH------HHHHHHHHhccCCc-cccCCCHHHHHHHHHhCCcee
Confidence 568999999999 99999998765322111 01111110000011 234568999999999999874
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.61 E-value=0.29 Score=32.68 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
..+++++.+.| +|||++++.- . ....+++.++++++||+.+++.+-
T Consensus 197 ~~~i~~~~~~L-~~gG~~~~~~-----~-------------------------~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 197 RRIIAQAPRLL-KPGGWLLLEI-----G-------------------------YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred HHHHHHHHHhc-ccCCEEEEEE-----C-------------------------ccHHHHHHHHHHhCCCCceEEEeC
Confidence 47899999999 9999887621 0 012457888999999999888764
No 73
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=93.43 E-value=0.083 Score=35.14 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=27.8
Q ss_pred ccccCCh-HHHHHHHHHHHHhccCCCceEEEEee
Q 037161 2 ILHAWSD-EHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 2 vlHdw~d-~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
|+|.++| ++....++++.++| .|||.+++...
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L-~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAAL-APGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTE-EEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 6888976 67899999999999 99999999775
No 74
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=92.97 E-value=0.14 Score=35.31 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=45.0
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
|=-+|.|+-.+++++++++-| .|||.+++ |+ .+... +.+......- +..++.-.....+.++.|+.+++.
T Consensus 179 IHLNwgD~GL~~ff~kis~ll-~pgGiLvv-EP---QpWks--Y~kaar~~e~--~~~ny~~i~lkp~~f~~~l~q~~v 248 (288)
T KOG2899|consen 179 IHLNWGDDGLRRFFRKISSLL-HPGGILVV-EP---QPWKS--YKKAARRSEK--LAANYFKIFLKPEDFEDWLNQIVV 248 (288)
T ss_pred EecccccHHHHHHHHHHHHhh-CcCcEEEE-cC---CchHH--HHHHHHHHHH--hhcCccceecCHHHHHhhhhhhhh
Confidence 334899999999999999999 99987655 42 22211 2222222111 111234567788999999998853
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=92.95 E-value=0.17 Score=29.75 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=22.0
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
.+.+.....++++++++.| +|||++++.
T Consensus 94 ~~~~~~~~~~~l~~~~~~L-k~gG~li~~ 121 (124)
T TIGR02469 94 IGGSGGLLQEILEAIWRRL-RPGGRIVLN 121 (124)
T ss_pred ECCcchhHHHHHHHHHHHc-CCCCEEEEE
Confidence 3444555679999999999 999998773
No 76
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=91.90 E-value=0.51 Score=31.47 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=43.4
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
++|..+.+.-.+.++++.++| +|||++++.-...++..... --...|.+|..++|+. +|.
T Consensus 122 ~~~~l~~~~R~~~~~~l~~lL-kpgG~~ll~~~~~~~~~~~g------------------pp~~~~~~eL~~~f~~-~~~ 181 (213)
T TIGR03840 122 ALIALPEEMRQRYAAHLLALL-PPGARQLLITLDYDQSEMAG------------------PPFSVSPAEVEALYGG-HYE 181 (213)
T ss_pred hhccCCHHHHHHHHHHHHHHc-CCCCeEEEEEEEcCCCCCCC------------------cCCCCCHHHHHHHhcC-Cce
Confidence 467888888899999999999 99998777655443221100 0123667788888863 455
Q ss_pred eeEEE
Q 037161 82 GIRFQ 86 (99)
Q Consensus 82 ~~~~~ 86 (99)
+..+.
T Consensus 182 i~~~~ 186 (213)
T TIGR03840 182 IELLE 186 (213)
T ss_pred EEEEe
Confidence 55544
No 77
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.77 E-value=1.4 Score=30.31 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=46.9
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCch-hhhhh--hh--hchHhhhcCCCceecCHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSA-TSKAN--SQ--IDVFMLTHSPRGKVRTKHEFINLAT 76 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~-~~~~~--~~--~dl~m~~~~~~g~~rt~~e~~~ll~ 76 (99)
|+...+.+++.++|+.+.+.. .||+.|+ +|.+.+-...... ..+.. .. .+..-+ . .+ .+.++..++|+
T Consensus 167 vl~YL~~~~v~~ll~~i~~~~-~~gs~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~--~~~~~~~~~l~ 239 (260)
T TIGR00027 167 LLMYLTEEAVDALLAFIAELS-APGSRLA-FDYVRPLDGEWRAGMRAPVYHAARGVDGSGL--V-FG--IDRADVAEWLA 239 (260)
T ss_pred hhhcCCHHHHHHHHHHHHHhC-CCCcEEE-EEeccccchhHHHHHHHHHHHhhhccccccc--c-cC--CChhhHHHHHH
Confidence 567889999999999999877 7776555 6776552211100 00000 00 111111 1 22 34689999999
Q ss_pred HcCCCeeEE
Q 037161 77 AAGFSGIRF 85 (99)
Q Consensus 77 ~aGf~~~~~ 85 (99)
..||+....
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999998765
No 78
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.01 E-value=0.35 Score=33.60 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.6
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
|||-.++.+.-.+|+++.+++| +|||.|+|-.
T Consensus 210 NVLIYFd~~~q~~il~~f~~~L-~~gG~LflG~ 241 (268)
T COG1352 210 NVLIYFDEETQERILRRFADSL-KPGGLLFLGH 241 (268)
T ss_pred ceEEeeCHHHHHHHHHHHHHHh-CCCCEEEEcc
Confidence 6777889999999999999999 9999999854
No 79
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.00 E-value=0.33 Score=33.52 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
-++-.+.|+|+...| +|||.+++.... .... +. .....+ ..-.-+.+..++-|+++||.+.+...
T Consensus 175 ~~~y~~al~ni~~lL-kpGG~Lil~~~l-~~t~----Y~--vG~~~F-------~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 175 LDEYRRALRNISSLL-KPGGHLILAGVL-GSTY----YM--VGGHKF-------PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHHHHTTE-EEEEEEEEEEES-S-SE----EE--ETTEEE-------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHHHHHHc-CCCcEEEEEEEc-Ccee----EE--ECCEec-------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 455688999999999 999999998763 3220 10 000011 12245688999999999999998875
No 80
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=90.82 E-value=0.68 Score=30.98 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=43.8
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCC-CCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELP-ENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~-~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
++|..+.+.-.+.++++.+.| +|||+++++-...++.. ..+ -...|.+|+.++|.. +|
T Consensus 125 ~~~~l~~~~R~~~~~~l~~lL-~pgG~~~l~~~~~~~~~~~gP-------------------p~~~~~~el~~~~~~-~~ 183 (218)
T PRK13255 125 ALIALPEEMRERYVQQLAALL-PAGCRGLLVTLDYPQEELAGP-------------------PFSVSDEEVEALYAG-CF 183 (218)
T ss_pred hHhhCCHHHHHHHHHHHHHHc-CCCCeEEEEEEEeCCccCCCC-------------------CCCCCHHHHHHHhcC-Cc
Confidence 467888888999999999999 99998666544433221 111 124668888888853 36
Q ss_pred CeeEEEE
Q 037161 81 SGIRFQC 87 (99)
Q Consensus 81 ~~~~~~~ 87 (99)
.+..+..
T Consensus 184 ~i~~~~~ 190 (218)
T PRK13255 184 EIELLER 190 (218)
T ss_pred eEEEeee
Confidence 6665554
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.48 E-value=0.51 Score=34.31 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=25.2
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
|.++++.+.++++.+++.| +|||+++|+-
T Consensus 312 ~~~~~~ia~~l~~~a~~~L-kpGG~L~iV~ 340 (378)
T PRK15001 312 HALTDNVAWEMFHHARRCL-KINGELYIVA 340 (378)
T ss_pred ccCCHHHHHHHHHHHHHhc-ccCCEEEEEE
Confidence 4567788899999999999 9999999973
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.39 E-value=2.9 Score=28.34 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE-cC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC-FV 89 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~ 89 (99)
..++++++.+.| +|||.+++ +. . . ...+++.+++++.||..+++.. ..
T Consensus 217 ~~~~~~~~~~~L-k~gG~l~~-e~----g--~-----------------------~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 217 YRRIIEQAPRYL-KPGGWLLL-EI----G--Y-----------------------DQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred HHHHHHHHHHhc-ccCCEEEE-EE----C--c-----------------------hHHHHHHHHHHhCCCceeEEecCCC
Confidence 467899999999 99998887 21 0 0 0123588899999999777753 33
Q ss_pred CCeeEEEEE
Q 037161 90 CNSWVMEFY 98 (99)
Q Consensus 90 ~~~~vie~~ 98 (99)
+..-++-+.
T Consensus 266 ~~~r~~~~~ 274 (275)
T PRK09328 266 GRDRVVLGR 274 (275)
T ss_pred CCceEEEEE
Confidence 333343343
No 83
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=89.86 E-value=2.1 Score=30.11 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEcCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
....++.+++.| +|||.+.|.|.- . .+.| ..+|.+-|...||......-...
T Consensus 243 ~~df~kEa~RiL-k~gG~l~IAEv~---S----------Rf~d--------------v~~f~r~l~~lGF~~~~~d~~n~ 294 (325)
T KOG3045|consen 243 LADFIKEANRIL-KPGGLLYIAEVK---S----------RFSD--------------VKGFVRALTKLGFDVKHKDVSNK 294 (325)
T ss_pred HHHHHHHHHHHh-ccCceEEEEehh---h----------hccc--------------HHHHHHHHHHcCCeeeehhhhcc
Confidence 456889999999 999999998742 1 1112 23478888888998887766666
Q ss_pred CeeEEEEEC
Q 037161 91 NSWVMEFYK 99 (99)
Q Consensus 91 ~~~vie~~k 99 (99)
.+.++|+.|
T Consensus 295 ~F~lfefkK 303 (325)
T KOG3045|consen 295 YFTLFEFKK 303 (325)
T ss_pred eEEEEEEec
Confidence 777777654
No 84
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.48 E-value=0.35 Score=31.31 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.3
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
||+-++.-++-...|+.|++-| +|||.|-|.
T Consensus 55 HvlEHlt~~Eg~~alkechr~L-rp~G~LriA 85 (185)
T COG4627 55 HVLEHLTYDEGTSALKECHRFL-RPGGKLRIA 85 (185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHh-CcCcEEEEE
Confidence 3556677788999999999999 999998874
No 85
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=88.70 E-value=1.1 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=27.3
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEcCC-CeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCFVC-NSWV 94 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~v 94 (99)
.+.-+|.+++..++++|||++.+.+.-+. .+++
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 67889999999999999999999986543 3443
No 86
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=87.99 E-value=3.9 Score=24.17 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=51.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcC----CCceecCHHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS----PRGKVRTKHEFINLATA 77 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~----~~g~~rt~~e~~~ll~~ 77 (99)
+|=+++.++..++|++...- ..+++++- +.|.. +. +..+.-+.-+--. +.-...+.++..+.+++
T Consensus 4 vLIHYp~~d~~~~l~~La~~---t~~~~ifT--fAP~T--~~----L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~ 72 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASR---TRGSLIFT--FAPRT--PL----LALMHAIGKLFPRPDRSPRIYPHREEDLRRALAA 72 (97)
T ss_pred eEeccCHHHHHHHHHHHHHh---ccCcEEEE--ECCCC--HH----HHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHh
Confidence 45578999999999998773 34555542 33432 11 1111111111100 11235568899999999
Q ss_pred cCCCeeEEEEcCCC---eeEEEEEC
Q 037161 78 AGFSGIRFQCFVCN---SWVMEFYK 99 (99)
Q Consensus 78 aGf~~~~~~~~~~~---~~vie~~k 99 (99)
+||++.+...+..+ .-++|+++
T Consensus 73 ~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 73 AGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred CCCeeeecccccCcChHHHHhhccC
Confidence 99999999887643 24666653
No 87
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=87.97 E-value=1.5 Score=29.44 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=41.8
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCC--CCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL--PENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~--~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
.|+..+.+.-.+-.+++++.| +|||+++++-...+.. ..|| ..-+.+|++++|. .+
T Consensus 125 ~l~Alpp~~R~~Ya~~l~~ll-~p~g~~lLi~l~~~~~~~~GPP--------------------f~v~~~ev~~l~~-~~ 182 (218)
T PF05724_consen 125 FLCALPPEMRERYAQQLASLL-KPGGRGLLITLEYPQGEMEGPP--------------------FSVTEEEVRELFG-PG 182 (218)
T ss_dssp STTTS-GGGHHHHHHHHHHCE-EEEEEEEEEEEES-CSCSSSSS------------------------HHHHHHHHT-TT
T ss_pred ccccCCHHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCcCCCCcC--------------------CCCCHHHHHHHhc-CC
Confidence 366778888889999999999 9999954443332222 1122 1234689999998 88
Q ss_pred CCeeEEEE
Q 037161 80 FSGIRFQC 87 (99)
Q Consensus 80 f~~~~~~~ 87 (99)
|++..+..
T Consensus 183 f~i~~l~~ 190 (218)
T PF05724_consen 183 FEIEELEE 190 (218)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEec
Confidence 88877764
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=87.18 E-value=1.4 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
.+....+++++.+.+ +|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l-~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLL-KPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHc-CCCCEEEEE
Confidence 567889999999999 999998875
No 89
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=87.06 E-value=2.2 Score=28.91 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=30.0
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.|+..+++.-.+..+++.+.| +|||+++++-.-.+
T Consensus 133 ~~~Alpp~~R~~Y~~~l~~lL-~pgg~llll~~~~~ 167 (226)
T PRK13256 133 AYIALPNDLRTNYAKMMLEVC-SNNTQILLLVMEHD 167 (226)
T ss_pred hHhcCCHHHHHHHHHHHHHHh-CCCcEEEEEEEecC
Confidence 477889999999999999999 99999999876433
No 90
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=86.76 E-value=0.49 Score=33.75 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEee----ecC---C------CCC---C--------c-hhhhhhhhhchHhhhcCC
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEA----VLP---E------LPE---N--------S-ATSKANSQIDVFMLTHSP 61 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~----~~~---~------~~~---~--------~-~~~~~~~~~dl~m~~~~~ 61 (99)
+.+.+..+|+|+...| +|||.++..=+ ++. + .+. + . ..+.+..-+++.+.-..+
T Consensus 161 se~~ar~~l~Nvs~~L-k~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~ 239 (331)
T PF03291_consen 161 SEEKARQFLKNVSSLL-KPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVD 239 (331)
T ss_dssp SHHHHHHHHHHHHHTE-EEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSS
T ss_pred CHHHHHHHHHHHHHhc-CCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCC
Confidence 6777888999999999 99998876422 110 1 000 0 0 001122223332211111
Q ss_pred Cceec--CHHHHHHHHHHcCCCeeEEEEc
Q 037161 62 RGKVR--TKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 62 ~g~~r--t~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+-.|+ ..+-+.+++++.||+.+....+
T Consensus 240 ~~~EYlV~~~~~~~la~eyGLeLV~~~~F 268 (331)
T PF03291_consen 240 DCPEYLVPFDFFVKLAKEYGLELVEKKNF 268 (331)
T ss_dssp CEEEE---HHHHHHHHHHTTEEEEEEEEH
T ss_pred CCceEEeeHHHHHHHHHHcCCEEEEeCCh
Confidence 33333 4678899999999999876554
No 91
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.37 E-value=1.1 Score=32.68 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=27.6
Q ss_pred cC-ChHHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 5 AW-SDEHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 5 dw-~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
|| ++++..++.+.+.+++ +|||||+.=-...+
T Consensus 306 Dwm~~~~~~~~~~~l~~~~-~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 306 DWMDPEQLNEEWQELARTA-RPGARVLWRSAAVP 338 (380)
T ss_pred hhCCHHHHHHHHHHHHHHh-CCCCEEEEeeCCCC
Confidence 56 8888999999999999 99999998766544
No 92
>PRK14967 putative methyltransferase; Provisional
Probab=86.17 E-value=7.1 Score=25.86 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCCCceEEEEeee
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
...+++++.+.| +|||+++++..-
T Consensus 138 ~~~~l~~a~~~L-k~gG~l~~~~~~ 161 (223)
T PRK14967 138 LDRLCDAAPALL-APGGSLLLVQSE 161 (223)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEEec
Confidence 456889999999 999999986543
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=84.88 E-value=1.7 Score=31.15 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
+.+...++++++++.| +|||+++|+-.
T Consensus 278 ~~~~~~~~i~~a~~~L-kpgG~L~iVan 304 (342)
T PRK09489 278 SLDAAQTLIRGAVRHL-NSGGELRIVAN 304 (342)
T ss_pred cHHHHHHHHHHHHHhc-CcCCEEEEEEe
Confidence 4566889999999999 99999998654
No 94
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=84.71 E-value=2.3 Score=28.07 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=27.9
Q ss_pred CccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCC
Q 037161 1 SILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPE 38 (99)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~ 38 (99)
++||++++++..+.++++++.+ ++.++|.|...+.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~---~~~v~i~e~~~~~ 147 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS---NRYILIAEYYNPS 147 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc---CcEEEEEEeeCCC
Confidence 3688888888999999999987 4678888876543
No 95
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.40 E-value=4.2 Score=28.65 Aligned_cols=81 Identities=14% Similarity=0.032 Sum_probs=47.2
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCC-CCC---chhhhhhhhhchHhhhcCCCceecCHHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL-PEN---SATSKANSQIDVFMLTHSPRGKVRTKHEFINLATA 77 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~-~~~---~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~ 77 (99)
+|-..+.++..++|+++.... +||++++.... .++. ... ..........++...-.... .....|++.++.+
T Consensus 179 Ll~YL~~~~v~~ll~~I~~~~-~~gS~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~~e~~~~l~~ 254 (297)
T COG3315 179 LLMYLPEEAVDRLLSRIAALS-APGSRVAFDYS-LPGSLRDRLRRPAARKTMRGEDLDRGELVYF--GDDPAEIETWLAE 254 (297)
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCceEEEecc-ccHHHHhcccchhhhhhccccccccccceec--cCCHHHHHHHHHh
Confidence 567789999999999999998 88777665433 2211 100 10000001111111111112 2346799999999
Q ss_pred cCCCeeEEE
Q 037161 78 AGFSGIRFQ 86 (99)
Q Consensus 78 aGf~~~~~~ 86 (99)
.||......
T Consensus 255 ~g~~~~~~~ 263 (297)
T COG3315 255 RGWRSTLNR 263 (297)
T ss_pred cCEEEEecC
Confidence 999988763
No 96
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.61 E-value=2.1 Score=27.73 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=23.3
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+.+..|.+++.++++++||+++.....
T Consensus 142 ~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 142 NIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred CcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 346789999999999999999988765
No 97
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=83.46 E-value=1.3 Score=29.36 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.3
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
|+|..+.+...+|++++.+++ +|||..+|...+
T Consensus 103 v~~fL~~~~~~~i~~~m~~~~-~pGG~~li~~~~ 135 (192)
T PF03848_consen 103 VFMFLQRELRPQIIENMKAAT-KPGGYNLIVTFM 135 (192)
T ss_dssp SGGGS-GGGHHHHHHHHHHTE-EEEEEEEEEEEB
T ss_pred EeccCCHHHHHHHHHHHHhhc-CCcEEEEEEEec
Confidence 567788888899999999999 999988886654
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=82.80 E-value=1.8 Score=28.22 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEE
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I 31 (99)
+.+....+|+.+.+.| +|||++++
T Consensus 120 ~~~~~~~~l~~~~~~L-kpgG~lv~ 143 (198)
T PRK00377 120 GSEKLKEIISASWEII-KKGGRIVI 143 (198)
T ss_pred CcccHHHHHHHHHHHc-CCCcEEEE
Confidence 3445678899999999 99999875
No 99
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=82.68 E-value=1.7 Score=31.35 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHhccCCCceEE
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLI 30 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~ 30 (99)
+.+++..+|+|+++.| +|||..+
T Consensus 212 tee~ar~~l~Nva~~L-kpGG~FI 234 (389)
T KOG1975|consen 212 TEESARIALRNVAKCL-KPGGVFI 234 (389)
T ss_pred cHHHHHHHHHHHHhhc-CCCcEEE
Confidence 6678999999999999 9998544
No 100
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=82.45 E-value=2.1 Score=27.55 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhccCCCceEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~ 32 (99)
..++|+++++.| +|||++++.
T Consensus 125 ~~~~l~~~~~~L-kpgG~lvi~ 145 (188)
T TIGR00438 125 VELALDIAKEVL-KPKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHHc-cCCCEEEEE
Confidence 368899999999 999999885
No 101
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=4.7 Score=28.91 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=52.6
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
+|-....+++..+++-+.+.. +++..+++|.+.+.++-+...-.-....+..+-. =-..-|.+..++=|.++||+
T Consensus 197 vLvYM~pe~S~~Li~w~~~~F--~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~L~g---le~y~s~Esq~~Rf~~~Gw~ 271 (335)
T KOG2918|consen 197 VLVYMEPEESANLIKWAASKF--ENAHFVNYEQINPNDRFGKVMLANLKRRGCPLHG---LETYNSIESQRSRFLKAGWE 271 (335)
T ss_pred hheeccHHHHHHHHHHHHHhC--CcccEEEEeccCCCChHHHHHHHHHHhcCCCCch---hhhcccHHHHHHHHHhcCCc
Confidence 456678899999999999987 7788999999986654221000000011111100 01245677888889999999
Q ss_pred eeEEEEc
Q 037161 82 GIRFQCF 88 (99)
Q Consensus 82 ~~~~~~~ 88 (99)
-+.+...
T Consensus 272 ~v~a~Dm 278 (335)
T KOG2918|consen 272 YVIAVDM 278 (335)
T ss_pred eeehhhH
Confidence 9887654
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=81.12 E-value=2.8 Score=27.78 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCCCceEEEEee
Q 037161 12 LKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
..+|+.+++.| +|||.+++...
T Consensus 145 ~~~L~~~~~~L-kpGG~~vi~~~ 166 (209)
T PRK11188 145 ELALDMCRDVL-APGGSFVVKVF 166 (209)
T ss_pred HHHHHHHHHHc-CCCCEEEEEEe
Confidence 57899999999 99999999654
No 103
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=80.68 E-value=1.8 Score=28.43 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhccCCCceEEEEe
Q 037161 11 CLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e 33 (99)
...+|+++++.| +|||.++|..
T Consensus 135 ~~~~l~~i~~~L-kpgG~l~i~~ 156 (202)
T PRK00121 135 QPEFLALYARKL-KPGGEIHFAT 156 (202)
T ss_pred CHHHHHHHHHHc-CCCCEEEEEc
Confidence 467899999999 9999999854
No 104
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=80.18 E-value=17 Score=25.42 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhccCCCceEEE-EeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIV-VEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I-~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
+....-|+.|+..| +||| +.| +-+.+-... +.. .....+-+-|.+|..++.+..||++++-..
T Consensus 179 ~Ni~~Yi~tI~~lL-kpgG-~WIN~GPLlyh~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 179 ENIIEYIETIEHLL-KPGG-YWINFGPLLYHFE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHHHHHHh-ccCC-EEEecCCccccCC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 34678899999999 9999 333 222222111 110 011245789999999999999999987655
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=79.81 E-value=2.2 Score=27.61 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhccCCCceEEEEee
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
...++|+++++.| +|||++++...
T Consensus 120 ~~~~~l~~~~~~L-kpgG~li~~~~ 143 (196)
T PRK07402 120 PIKEILQAVWQYL-KPGGRLVATAS 143 (196)
T ss_pred CHHHHHHHHHHhc-CCCeEEEEEee
Confidence 4578899999999 99999888764
No 106
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=79.65 E-value=3 Score=29.54 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
+..+.|+.+.+.| +|||||+|+-+.--
T Consensus 218 ~L~~~L~~~~~~L-~~gGrl~VISfHSL 244 (305)
T TIGR00006 218 ELEEALQFAPNLL-APGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEEecCcH
Confidence 4577899999999 99999999987533
No 107
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=78.09 E-value=4.1 Score=27.84 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccCC-CceEEEEeeecCCCCCCc-hhhhhhhhhchHhhhcCCCceecC--HHHHHHHHHHcCCCeeEEE
Q 037161 11 CLKLLKNCYESINKE-DGKLIVVEAVLPELPENS-ATSKANSQIDVFMLTHSPRGKVRT--KHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 11 ~~~iL~~~~~al~~p-gg~l~I~e~~~~~~~~~~-~~~~~~~~~dl~m~~~~~~g~~rt--~~e~~~ll~~aGf~~~~~~ 86 (99)
--++|+.++.++ .| +|++++. .++|-..-.. ..+....--|- .+- . +|+.+. ...+-++|+.+||.+....
T Consensus 185 p~kLL~Di~~vl-~psngrviva-LVLP~~hYVE~N~~g~~~rPdn-~Le-~-~Gr~~ee~v~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 185 PFKLLEDIHLVL-APSNGRVIVA-LVLPYMHYVETNTSGLPLRPDN-LLE-N-NGRSFEEEVARFMELLRNCGYRVEAWT 259 (288)
T ss_pred hHHHHHHHHHHh-ccCCCcEEEE-EEecccceeecCCCCCcCCchH-HHH-h-cCccHHHHHHHHHHHHHhcCchhhhhh
Confidence 457888888898 55 8887763 3444211000 00000011121 122 2 555332 2336689999999988776
Q ss_pred EcC
Q 037161 87 CFV 89 (99)
Q Consensus 87 ~~~ 89 (99)
+++
T Consensus 260 rlP 262 (288)
T KOG3987|consen 260 RLP 262 (288)
T ss_pred cCC
Confidence 654
No 108
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=77.23 E-value=3.4 Score=27.03 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCCCceEEEEe
Q 037161 11 CLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e 33 (99)
...+++.+++.| +|||++++++
T Consensus 124 ~~~~l~~~~~~L-kpGG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLL-KPGGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhc-CCCeEEEEEe
Confidence 567899999999 9999999874
No 109
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=76.91 E-value=4.1 Score=28.73 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCC
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPEL 39 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~ 39 (99)
++....|.++.+.| +|||+++|+-+.--++
T Consensus 213 ~~L~~~L~~~~~~L-~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLL-KPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEEecCcHHH
Confidence 34678899999999 9999999998754333
No 110
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=4.6 Score=28.29 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=28.8
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEE-EeeecC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIV-VEAVLP 37 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I-~e~~~~ 37 (99)
-|-+++.++|...|.+++.+| +||-.+++ +|...+
T Consensus 163 tlGN~tp~e~~~Fl~~l~~a~-~pGd~~LlGvDl~k~ 198 (321)
T COG4301 163 TLGNLTPGECAVFLTQLRGAL-RPGDYFLLGVDLRKP 198 (321)
T ss_pred cccCCChHHHHHHHHHHHhcC-CCcceEEEeccccCH
Confidence 367899999999999999999 99987776 555433
No 111
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=76.29 E-value=2.1 Score=29.96 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhh-cC----CCceecCHHHHHHHHHHcCCCeeEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLT-HS----PRGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~----~~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
-+.+|+.+.+.| +|||+++|-...-.-. . ... ...++-+.+. .. ...+--+..|...++..+|+++..+
T Consensus 174 p~~~l~~l~~~l-kP~G~lfittinrt~l--S-~~~--~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 174 PQEFLNCLSALL-KPNGRLFITTINRTIL--S-FAG--TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred HHHHHHHHHHHh-CCCCceEeeehhhhHH--H-hhc--cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 578899999999 9999999976421111 0 000 1122222221 11 1345668899999999999998887
Q ss_pred EE
Q 037161 86 QC 87 (99)
Q Consensus 86 ~~ 87 (99)
..
T Consensus 248 ~G 249 (282)
T KOG1270|consen 248 VG 249 (282)
T ss_pred hc
Confidence 54
No 112
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=75.99 E-value=3.4 Score=29.42 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=25.9
Q ss_pred CCceecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 61 PRGKVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 61 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
.++.-||.++++.++++|||++.+.+.-+
T Consensus 283 e~S~Kyt~~~~~~l~~~aG~~~~~~W~d~ 311 (319)
T TIGR03439 283 ECSGKYDKDEREKLCQSAGLKVVDVWTNE 311 (319)
T ss_pred EeeeCCCHHHHHHHHHHCCCeeeEEEECC
Confidence 36789999999999999999999998654
No 113
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=75.54 E-value=3.8 Score=26.61 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccCCCceEEEEe
Q 037161 12 LKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e 33 (99)
..+++.+++.| +|||.+++.-
T Consensus 112 ~~~l~~~~r~L-kpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVL-KKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHh-CCCCEEEEEe
Confidence 46899999999 9999997753
No 114
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=74.48 E-value=5 Score=27.34 Aligned_cols=59 Identities=5% Similarity=0.090 Sum_probs=36.2
Q ss_pred HhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCc--------eecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 20 ESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRG--------KVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 20 ~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g--------~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
.++ ++|.+++|+|-++..+.+-. ...++. -.. |+ -.+....|+++.++.|+.+..+...
T Consensus 171 ~~l-~~G~rVLIVDDvi~TG~Tl~------~~~~ll--~~~-ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~sl~~~ 237 (238)
T PRK08558 171 SAL-KKGDRVLIVDDIIRSGETQR------ALLDLA--RQA-GADVVGVFFLIAVGEVGIDRAREETDAPVDALYTL 237 (238)
T ss_pred HHc-CCcCEEEEEecccccCHHHH------HHHHHH--HHc-CCEEEEEEEEEecCchHHHHHhHhcCCCEEEEEEe
Confidence 467 89999999999988664321 111211 101 11 1333445888998899888776643
No 115
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=74.43 E-value=6.8 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+||+++.+.+ +|||+|+..-..+.
T Consensus 179 ~~iL~~a~~~l-kpgG~lvYstcs~~ 203 (264)
T TIGR00446 179 KELIDSAFDAL-KPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 56999999999 99999876655443
No 116
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=72.94 E-value=1.8 Score=22.98 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=10.4
Q ss_pred HHHHHcCCCeeEEE
Q 037161 73 NLATAAGFSGIRFQ 86 (99)
Q Consensus 73 ~ll~~aGf~~~~~~ 86 (99)
+||++|||..=+-.
T Consensus 31 ~WL~~aGF~~G~~v 44 (57)
T PF08845_consen 31 KWLEEAGFTIGDPV 44 (57)
T ss_pred hhhHHhCCCCCCEE
Confidence 68999999764433
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=72.91 E-value=7.3 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhccCCCceEEEEee
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
....+++++++.| +|||.+++...
T Consensus 237 ~l~~ll~~~~~~L-kpgG~li~sgi 260 (288)
T TIGR00406 237 VIKELYPQFSRLV-KPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHHc-CCCcEEEEEeC
Confidence 4567899999999 99999988664
No 118
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.83 E-value=7.3 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
++..+.|..+.+.| +|||||+|+-+.--
T Consensus 221 ~~L~~~L~~a~~~L-~~gGRl~VIsFHSL 248 (314)
T COG0275 221 EELEEALEAALDLL-KPGGRLAVISFHSL 248 (314)
T ss_pred HHHHHHHHHHHHhh-CCCcEEEEEEecch
Confidence 34567889999999 99999999987543
No 119
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=72.82 E-value=5 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=20.7
Q ss_pred cCChHHH-------HHHHHHHHHhccCCCceEEEE
Q 037161 5 AWSDEHC-------LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 5 dw~d~~~-------~~iL~~~~~al~~pgg~l~I~ 32 (99)
.|+.++. .+||+++.+.| +|||+|+=.
T Consensus 208 ~~s~~~v~~l~~lQ~~iL~~A~~~L-kpGG~LVYS 241 (470)
T PRK11933 208 NWSPESNLEIAATQRELIESAFHAL-KPGGTLVYS 241 (470)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEE
Confidence 4666554 78999999999 999987433
No 120
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=72.26 E-value=10 Score=23.20 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCeeEEEEcCCCeeEEEEEC
Q 037161 69 HEFINLATAAGFSGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 99 (99)
...++-|.++||.+.+....++-...+.|+|
T Consensus 93 ~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 93 GAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 4678999999999999888877666666654
No 121
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=72.24 E-value=3.2 Score=29.53 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
++....|.++.+.| +||||++|+-+.
T Consensus 218 ~~L~~~L~~a~~~L-~~gGrl~VISFH 243 (310)
T PF01795_consen 218 EELERGLEAAPDLL-KPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHHE-EEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEEEec
Confidence 45678899999999 999999999864
No 122
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=71.65 E-value=4.8 Score=25.57 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEe
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
+-..++++.+.+.| +|||+++++-
T Consensus 117 ~~~~~~i~~a~~~L-k~~G~l~lv~ 140 (170)
T PF05175_consen 117 DLLRDFIEQARRYL-KPGGRLFLVI 140 (170)
T ss_dssp HHHHHHHHHHHHHE-EEEEEEEEEE
T ss_pred hhHHHHHHHHHHhc-cCCCEEEEEe
Confidence 34688999999999 9999997643
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=71.48 E-value=7.2 Score=28.82 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+||+++++.| +|||+++.....+.
T Consensus 357 ~~iL~~a~~~l-kpgG~lvystcs~~ 381 (445)
T PRK14904 357 AELLDHAASLL-KPGGVLVYATCSIE 381 (445)
T ss_pred HHHHHHHHHhc-CCCcEEEEEeCCCC
Confidence 36999999999 99999999886554
No 124
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=71.29 E-value=5.2 Score=29.34 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPE 38 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~ 38 (99)
-.+||+++++.| +|||++++...-+..
T Consensus 347 Q~~lL~~a~~~L-kpgG~lvystcs~~~ 373 (426)
T TIGR00563 347 QSEILDAIWPLL-KTGGTLVYATCSVLP 373 (426)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEeCCCCh
Confidence 368999999999 999999999876653
No 125
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=21 Score=23.26 Aligned_cols=63 Identities=27% Similarity=0.245 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+--+++++-+++.| .|||+|+| |.+-+... ...++ .|..-..+..--.|-.+||+-++-+..
T Consensus 70 ~~E~~l~~~l~~~l-spg~~lfV-eYv~DrET----------~~~lq------kG~~p~atrLGfeL~k~GftwfkdWY~ 131 (192)
T COG4353 70 ELEVKLYKVLYNFL-SPGGKLFV-EYVRDRET----------RYRLQ------KGKPPVATRLGFELLKAGFTWFKDWYF 131 (192)
T ss_pred HHHHHHHHHHHHhc-CCCCceEE-EEEechhH----------HHHHH------cCCCCccchhhHHHHhCcceeeeeeec
Confidence 34568888899999 99998887 77654321 11111 344444445556677889998887765
Q ss_pred C
Q 037161 89 V 89 (99)
Q Consensus 89 ~ 89 (99)
+
T Consensus 132 P 132 (192)
T COG4353 132 P 132 (192)
T ss_pred c
Confidence 3
No 126
>PRK04457 spermidine synthase; Provisional
Probab=70.35 E-value=5.5 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.580 Sum_probs=18.2
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
..++++|++.| +|||.++|.
T Consensus 157 ~efl~~~~~~L-~pgGvlvin 176 (262)
T PRK04457 157 QPFFDDCRNAL-SSDGIFVVN 176 (262)
T ss_pred HHHHHHHHHhc-CCCcEEEEE
Confidence 79999999999 999998884
No 127
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=69.93 E-value=5.7 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+||+++.+.| +|||+|+.....+.
T Consensus 364 ~~iL~~a~~~l-kpgG~lvystcsi~ 388 (434)
T PRK14901 364 AELLESLAPLL-KPGGTLVYATCTLH 388 (434)
T ss_pred HHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 68999999999 99999998876554
No 128
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=69.80 E-value=6.2 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.2
Q ss_pred ccccCChH-HHHHHHHHHHHhccCCCceEEEEee
Q 037161 2 ILHAWSDE-HCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 2 vlHdw~d~-~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
|+|+|+-. .-.++|+.+.+.+ +|||..+|.=.
T Consensus 112 vihhlsT~~RR~~~l~e~~r~l-rpgg~~lvyvw 144 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVL-RPGGNALVYVW 144 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHh-cCCCceEEEEe
Confidence 68888554 4778999999999 99999887654
No 129
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=69.53 E-value=20 Score=22.27 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=45.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeeecCC--------------CCCC-chhhhhhhhhchHhhhcCCCceecCHH
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPE--------------LPEN-SATSKANSQIDVFMLTHSPRGKVRTKH 69 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~--------------~~~~-~~~~~~~~~~dl~m~~~~~~g~~rt~~ 69 (99)
.++++++..+|.+....| ..-|.-+++-.-... .+.. ...-....++|+.--+.. |+.+-|.+
T Consensus 10 ~L~~~ea~~FL~~~~~~L-~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~lal-Gd~~Ls~e 87 (141)
T PF12419_consen 10 ELTTEEAYDFLTEAAPRL-RAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWELAL-GDEELSEE 87 (141)
T ss_pred ccCHHHHHHHHHHHHHHH-HHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEEEEE-CCEECCHH
Confidence 468899999999988888 544433333211110 0000 000012233444333334 89999999
Q ss_pred HHHHHHHHcCCCeeEE
Q 037161 70 EFINLATAAGFSGIRF 85 (99)
Q Consensus 70 e~~~ll~~aGf~~~~~ 85 (99)
||++|+++.. ..+++
T Consensus 88 Ef~~L~~~~~-~LV~~ 102 (141)
T PF12419_consen 88 EFEQLVEQKR-PLVRF 102 (141)
T ss_pred HHHHHHHcCC-CeEEE
Confidence 9999999877 55554
No 130
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=69.35 E-value=5.8 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhccCCCceEEEEee
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
....||+.+.+.| +|||||++-=.
T Consensus 113 ~i~~ile~~~~~l-~~ggrlV~nai 136 (187)
T COG2242 113 NIEEILEAAWERL-KPGGRLVANAI 136 (187)
T ss_pred CHHHHHHHHHHHc-CcCCeEEEEee
Confidence 3568999999999 99999987443
No 131
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=68.97 E-value=5.3 Score=20.46 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCCeeEE
Q 037161 69 HEFINLATAAGFSGIRF 85 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~~~ 85 (99)
.|+..+|+.+||+..+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58999999999998864
No 132
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=68.46 E-value=6.9 Score=25.29 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhccCCCceEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~ 32 (99)
...+++.+++.| +|||++++.
T Consensus 121 ~~~~~~~~~~~L-kpgG~lvi~ 141 (181)
T TIGR00138 121 LNVLLELTLNLL-KVGGYFLAY 141 (181)
T ss_pred HHHHHHHHHHhc-CCCCEEEEE
Confidence 345788889999 999999876
No 133
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=68.46 E-value=3.3 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=16.1
Q ss_pred eecCHHHHHHHHHHcCCCeeE
Q 037161 64 KVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 64 ~~rt~~e~~~ll~~aGf~~~~ 84 (99)
...=..||+++|.++|.+..+
T Consensus 24 f~glP~eW~~ll~~sgis~~e 44 (46)
T cd01093 24 FTGLPEEWQRLLKSSGITKEE 44 (46)
T ss_pred ccCCCHHHHHHHHHcCCCHHH
Confidence 344468999999999987643
No 134
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=67.73 E-value=4 Score=23.70 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEE
Q 037161 10 HCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
....+++++.+.| +|||.++++
T Consensus 93 ~~~~~~~~~~~~L-~~gG~~~~~ 114 (117)
T PF13659_consen 93 LYSRFLEAAARLL-KPGGVLVFI 114 (117)
T ss_dssp HHHHHHHHHHHHE-EEEEEEEEE
T ss_pred HHHHHHHHHHHHc-CCCeEEEEE
Confidence 3578899999999 999998875
No 135
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=67.39 E-value=9.1 Score=27.18 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
.+.-+.+|++.+++.| ++||.|.|+=.
T Consensus 241 ~~~~~~~~i~~A~~~L-~~gGeL~iVan 267 (300)
T COG2813 241 VHSLAQEIIAAAARHL-KPGGELWIVAN 267 (300)
T ss_pred hHHHHHHHHHHHHHhh-ccCCEEEEEEc
Confidence 3455779999999999 99999999765
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=66.72 E-value=6.1 Score=28.90 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
..+++.|++.| +|||.+++.
T Consensus 248 ~EFy~~~~~~L-kPgGV~V~Q 267 (374)
T PRK01581 248 SELFARIATFL-TEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHhc-CCCcEEEEe
Confidence 67889999999 999987775
No 137
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=65.69 E-value=19 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=16.1
Q ss_pred hhchHhhhcCCCceecCHHHHHHHHHHc
Q 037161 51 QIDVFMLTHSPRGKVRTKHEFINLATAA 78 (99)
Q Consensus 51 ~~dl~m~~~~~~g~~rt~~e~~~ll~~a 78 (99)
+-|+.--+.- +|+.++.++|.++|.++
T Consensus 47 l~dIs~qv~~-~G~k~~~e~WK~~~~~~ 73 (127)
T PF05772_consen 47 LGDISRQVEW-NGRKLDPEDWKELFTAA 73 (127)
T ss_dssp HHHHHHH--B-TTB---HHHHHHHHHHH
T ss_pred HHHHHHHhHh-cCccCCHHHHHHHHHHH
Confidence 3455444443 89999999999999864
No 138
>PRK03612 spermidine synthase; Provisional
Probab=65.31 E-value=6 Score=29.94 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=21.4
Q ss_pred ccccCChHH--------HHHHHHHHHHhccCCCceEEEE
Q 037161 2 ILHAWSDEH--------CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 2 vlHdw~d~~--------~~~iL~~~~~al~~pgg~l~I~ 32 (99)
|++|++|.. ..++++++++.| +|||.+++.
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L-~pgG~lv~~ 414 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRL-APDGLLVVQ 414 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhc-CCCeEEEEe
Confidence 456666543 235888999999 999987764
No 139
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=65.24 E-value=10 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
-.+.+++|.+.-+.+ +||+.|+|+|.
T Consensus 218 ~~kTt~FLl~Lt~~~-~~GslLLVvDS 243 (315)
T PF11312_consen 218 ISKTTKFLLRLTDIC-PPGSLLLVVDS 243 (315)
T ss_pred hHHHHHHHHHHHhhc-CCCcEEEEEcC
Confidence 346789999999999 99999999995
No 140
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=65.03 E-value=43 Score=23.12 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhc------hHhhhcC---CCceecCHHHHHHHHHHcCCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQID------VFMLTHS---PRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~d------l~m~~~~---~~g~~rt~~e~~~ll~~aGf~ 81 (99)
=.++|.+....| .|||.|.|. +|+....+.. ..+.+ ....... ..+..-|...|-++|...+ .
T Consensus 108 H~~ll~rL~~~L-~Pgg~LAVQ---mPdN~depsH---~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~ 179 (257)
T COG4106 108 HPELLPRLVSQL-APGGVLAVQ---MPDNLDEPSH---RLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLA-C 179 (257)
T ss_pred cHHHHHHHHHhh-CCCceEEEE---CCCccCchhH---HHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCccc-c
Confidence 357899999999 999998884 3443322210 01111 1111100 1345668899999999998 6
Q ss_pred eeEEEEc------CCCeeEEEEEC
Q 037161 82 GIRFQCF------VCNSWVMEFYK 99 (99)
Q Consensus 82 ~~~~~~~------~~~~~vie~~k 99 (99)
.+.++++ .+...|+|.+|
T Consensus 180 rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 180 RVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred eeeeeeeeccccCCCccchhhhee
Confidence 7777654 45667877665
No 141
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=64.93 E-value=7.2 Score=25.09 Aligned_cols=29 Identities=7% Similarity=0.280 Sum_probs=23.2
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.||......++.+++.+.+ +||+.|+.+|
T Consensus 131 ~D~~~~~~~~i~~~~~~~~-~~g~Iil~Hd 159 (191)
T TIGR02764 131 RDWKNPGVESIVDRVVKNT-KPGDIILLHA 159 (191)
T ss_pred CccCCCCHHHHHHHHHhcC-CCCCEEEEeC
Confidence 3776666778899998899 8988888876
No 142
>PLN02366 spermidine synthase
Probab=64.57 E-value=7.7 Score=27.45 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhccCCCceEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I 31 (99)
...+++.+++.| +|||.+++
T Consensus 185 t~ef~~~~~~~L-~pgGvlv~ 204 (308)
T PLN02366 185 EKPFFESVARAL-RPGGVVCT 204 (308)
T ss_pred HHHHHHHHHHhc-CCCcEEEE
Confidence 457889999999 99998765
No 143
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=64.25 E-value=25 Score=22.78 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCeeEEEEc
Q 037161 68 KHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~ 88 (99)
.....+|++++|++++.+..+
T Consensus 132 ~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 132 ALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred HHHHHHHHHHCCCEEEEEEEE
Confidence 456677888888888777543
No 144
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=64.18 E-value=7.3 Score=28.47 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPEL 39 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~ 39 (99)
-.+||++..+.| ++||+++-.-.-+.+-
T Consensus 275 Q~~iL~rgl~lL-k~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 275 QLRILRRGLRLL-KVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeccCCCch
Confidence 368999999999 9999988766655543
No 145
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=64.17 E-value=10 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=21.2
Q ss_pred Cc-eecCHHHHHHHHHHcCCCeeEEEEcCCCeeEE
Q 037161 62 RG-KVRTKHEFINLATAAGFSGIRFQCFVCNSWVM 95 (99)
Q Consensus 62 ~g-~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi 95 (99)
|| +.-+-.|++++|+++||+.++.+ +.++.-|+
T Consensus 14 GG~nki~MaeLr~~l~~~Gf~~V~Ty-i~SGNvvf 47 (137)
T PF08002_consen 14 GGKNKIKMAELREALEDLGFTNVRTY-IQSGNVVF 47 (137)
T ss_dssp TTBS---HHHHHHHHHHCT-EEEEEE-TTTTEEEE
T ss_pred CCCCcccHHHHHHHHHHcCCCCceEE-EeeCCEEE
Confidence 44 45679999999999999999855 33444443
No 146
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=63.59 E-value=5.9 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.+....-|+.+.+-| +|||.|++.|
T Consensus 81 ~~~~~~dl~~~~~~l-~~ggviv~dD 105 (106)
T PF13578_consen 81 YEAVLRDLENALPRL-APGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHHGGGE-EEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 355777888888889 8999888776
No 147
>PRK00811 spermidine synthase; Provisional
Probab=62.62 E-value=10 Score=26.29 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhccCCCceEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I 31 (99)
...+++.|++.| +|||.+++
T Consensus 170 t~ef~~~~~~~L-~~gGvlv~ 189 (283)
T PRK00811 170 TKEFYENCKRAL-KEDGIFVA 189 (283)
T ss_pred HHHHHHHHHHhc-CCCcEEEE
Confidence 367899999999 99998776
No 148
>PF13592 HTH_33: Winged helix-turn helix
Probab=62.17 E-value=7.6 Score=20.42 Aligned_cols=27 Identities=19% Similarity=0.038 Sum_probs=23.6
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
-|..+|.+....||...||+-.+..+.
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccccCCCC
Confidence 488899999999999999998876655
No 149
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=61.53 E-value=12 Score=26.28 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccCCCceEEE
Q 037161 10 HCLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I 31 (99)
...++++++.+.| +|||++++
T Consensus 241 ~~~~i~~~a~~~L-~pgG~l~~ 261 (307)
T PRK11805 241 LVRRILAEAPDYL-TEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHHhc-CCCCEEEE
Confidence 3578999999999 99998876
No 150
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=61.48 E-value=15 Score=25.95 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhccCCCceEEEE
Q 037161 10 HCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
--.++|+.+++.| +|||++++.
T Consensus 272 l~~~~l~~~~r~L-k~gG~lv~~ 293 (329)
T TIGR01177 272 LYERSLEEFHEVL-KSEGWIVYA 293 (329)
T ss_pred HHHHHHHHHHHHc-cCCcEEEEE
Confidence 3578999999999 999999875
No 151
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=61.05 E-value=9.3 Score=26.14 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHhccCCCceEEEEe
Q 037161 14 LLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 14 iL~~~~~al~~pgg~l~I~e 33 (99)
.+++++++| +|||+++++.
T Consensus 163 ~~~e~~rvL-kpgG~li~~~ 181 (272)
T PRK11088 163 KAEELARVV-KPGGIVITVT 181 (272)
T ss_pred CHHHHHhhc-cCCCEEEEEe
Confidence 467889999 9999999864
No 152
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=60.53 E-value=13 Score=25.73 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccCCCceEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I 31 (99)
..++++++.+.| +|||++++
T Consensus 230 ~~~il~~a~~~L-~~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHL-NENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhc-CCCCEEEE
Confidence 478899999999 99998764
No 153
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=60.50 E-value=16 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
-+++.-+|.++...| ++|+.|+|+-.
T Consensus 81 K~e~~~lL~~l~~~L-~~g~~i~vVGE 106 (155)
T PF08468_consen 81 KAEAQYLLANLLSHL-PPGTEIFVVGE 106 (155)
T ss_dssp HHHHHHHHHHHHTTS--TT-EEEEEEE
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEec
Confidence 456888999999999 99999998654
No 154
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=60.02 E-value=15 Score=26.97 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.3
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.++|+++.+.| +|||++++....+.
T Consensus 352 ~~iL~~a~~~L-kpGG~lvystcs~~ 376 (427)
T PRK10901 352 SEILDALWPLL-KPGGTLLYATCSIL 376 (427)
T ss_pred HHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 57999999999 99999998886444
No 155
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=59.35 E-value=15 Score=25.46 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCC-chhhhhh-hhhchHhhhcCCCceecCHHHHH----HHHHHcCCCe
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPEN-SATSKAN-SQIDVFMLTHSPRGKVRTKHEFI----NLATAAGFSG 82 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~-~~~~~~~-~~~dl~m~~~~~~g~~rt~~e~~----~ll~~aGf~~ 82 (99)
+++++-+-++.++|..|+|-.+++-. .+.+ ....+.. ...+..++... -.+.|+.++|. .++..||.+.
T Consensus 14 ~~ai~hi~ri~RvL~~~~Gh~LLvG~----~GsGr~sl~rLaa~i~~~~~~~i~-~~~~y~~~~f~~dLk~~~~~ag~~~ 88 (268)
T PF12780_consen 14 DEAIEHIARISRVLSQPRGHALLVGV----GGSGRQSLARLAAFICGYEVFQIE-ITKGYSIKDFKEDLKKALQKAGIKG 88 (268)
T ss_dssp HHHHHHHHHHHHHHCSTTEEEEEECT----TTSCHHHHHHHHHHHTTEEEE-TT-TSTTTHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEecC----CCccHHHHHHHHHHHhccceEEEE-eeCCcCHHHHHHHHHHHHHHHhccC
Confidence 35777788888999678998876542 2222 1111111 22233333322 34567777764 5667899887
Q ss_pred eEEE
Q 037161 83 IRFQ 86 (99)
Q Consensus 83 ~~~~ 86 (99)
..+.
T Consensus 89 ~~~v 92 (268)
T PF12780_consen 89 KPTV 92 (268)
T ss_dssp S-EE
T ss_pred CCeE
Confidence 6654
No 156
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=58.33 E-value=16 Score=24.93 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
++...-.|-+..+.| |+.|.+.|++.--....- ..+.....+-.- . ..+.....+|++.|...|..++++.
T Consensus 71 eE~~~p~lwRfw~~l-P~~G~i~IF~rSwY~~~l---v~rv~~~~~~~~---~-~~~~~~I~~FEr~L~~~G~~IlKff 141 (230)
T TIGR03707 71 RERTQWYFQRYVQHL-PAAGEIVLFDRSWYNRAG---VERVMGFCTDEE---Y-EEFLRQVPEFERMLVRDGIHLFKYW 141 (230)
T ss_pred HHHcChHHHHHHHhC-CCCCeEEEEeCchhhhHH---HHHhcCCCCHHH---H-HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345667889999999 999999999864332210 000000001000 0 2344557789999999999998875
No 157
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=57.59 E-value=17 Score=26.82 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCCCceEEEEeeec
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVL 36 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~ 36 (99)
..+|+++.+.| +|||+++..-..+
T Consensus 359 ~~iL~~a~~~L-kpGG~lvystcs~ 382 (444)
T PRK14902 359 LEILESVAQYL-KKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHc-CCCCEEEEEcCCC
Confidence 56899999999 9999988655433
No 158
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=57.47 E-value=22 Score=20.42 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
.-+|+++.+++.-.+=.+ |...|.+.-.--..-++..........-.+..--...-+..|+.+|-.+++++.||+
T Consensus 18 ~l~~~e~lr~ia~~Rl~~--P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 18 PLSDEEFLRIIAAFRLLL--PEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp ---HHHHHHHHHHHHHHS--TTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCHHHHHHHHHHHHHHC--CCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 457889999998666665 666665543211111110000000000000000011134569999999999999986
No 159
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=57.40 E-value=9.5 Score=24.59 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccCCCceEEEE
Q 037161 10 HCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
.....++.+++.| +|||.++|.
T Consensus 34 ~~~~~~~~~~rvL-k~~g~~~i~ 55 (231)
T PF01555_consen 34 WMEEWLKECYRVL-KPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHHE-EEEEEEEEE
T ss_pred HHHHHHHHHHhhc-CCCeeEEEE
Confidence 3678899999999 999998874
No 160
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=56.71 E-value=75 Score=23.18 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+....-|..|.+.| +|||.-+=+-+.+-.-.+.+ +. .. ..+-+-|.++...+.+.-||++.+-..+
T Consensus 273 ~NileYi~tI~~iL-k~GGvWiNlGPLlYHF~d~~---------g~---~~-~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 273 HNILEYIDTIYKIL-KPGGVWINLGPLLYHFEDTH---------GV---EN-EMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred HHHHHHHHHHHHhc-cCCcEEEeccceeeeccCCC---------CC---cc-cccccccHHHHHHHHHhcCcEEEEeeee
Confidence 45677889999999 99886665555554332211 00 11 2478899999999999999999887654
Q ss_pred C
Q 037161 89 V 89 (99)
Q Consensus 89 ~ 89 (99)
.
T Consensus 339 d 339 (369)
T KOG2798|consen 339 D 339 (369)
T ss_pred e
Confidence 3
No 161
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=56.67 E-value=15 Score=27.21 Aligned_cols=25 Identities=12% Similarity=0.436 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+||+++++.| +|||.|+..-..+.
T Consensus 346 ~~iL~~a~~~L-kpGG~LvYsTCs~~ 370 (431)
T PRK14903 346 LRIVSQAWKLL-EKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHHHhc-CCCCEEEEEECCCC
Confidence 67899999999 99999766665443
No 162
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.22 E-value=16 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=22.0
Q ss_pred CceecCHHHHHHHHHHcCCCeeEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
||.++...+|++++++.|++....
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 788999999999999999988776
No 163
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=56.12 E-value=6.7 Score=22.74 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHc
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAA 78 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~a 78 (99)
+++.+||+-+.+.- ..-|...|+|.+........ ....+.-+..+.-|+.++..+|++++.+.
T Consensus 4 ~~a~~il~~V~~~~-~~~~~~~ivdvlrGs~~~~i------~~~~~~~l~~yG~gk~~~~~~~~~li~~L 66 (106)
T PF09382_consen 4 EEAKKILSCVQRLK-QRFGLSQIVDVLRGSKSKKI------REKGHDQLPTYGIGKDMSKDDWERLIRQL 66 (106)
T ss_dssp HHHHHHHHHHHHTT-T-S-HHHHHHHHTT-S-CCC------HHTTGGGSTTTTTTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccccHHHHHHHHHhccchhh------hhcCCCcCcccCCcccCCHHHHHHHHHHH
Confidence 46778888777754 44466666676554332211 11223333344468899999999998753
No 164
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=55.74 E-value=13 Score=24.45 Aligned_cols=60 Identities=10% Similarity=0.206 Sum_probs=37.0
Q ss_pred HhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCc--------eecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 20 ESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRG--------KVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 20 ~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g--------~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
.++ ++|-+++|+|-++....+-. ....+ +-.. |+ -+++...+.+.+.+.|+....+....
T Consensus 112 ~~i-~~G~rVlIVDDviaTGgT~~------a~~~l--v~~a-Ga~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~ 179 (189)
T PRK09219 112 KFL-SEGDRVLIIDDFLANGQAAL------GLIDI--IEQA-GAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIA 179 (189)
T ss_pred hhC-CCCCEEEEEeehhhcChHHH------HHHHH--HHHC-CCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEee
Confidence 357 79999999999887654321 11111 1000 11 24555568888888998888877654
No 165
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=55.71 E-value=11 Score=26.10 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=23.0
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.||.......|.+++.+.+ .||+.|+.+|
T Consensus 210 ~Dw~~~~~~~i~~~v~~~~-~~G~IILmHd 238 (268)
T TIGR02873 210 IDWKNPSPSVMVNRVLSKI-HPGAMVLMHP 238 (268)
T ss_pred CCCCCCCHHHHHHHHHhcC-CCCcEEEEcC
Confidence 5786666778889988888 8988887776
No 166
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.70 E-value=19 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.2
Q ss_pred ccccCChHHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 2 ILHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
+|||=++......+++.-+.+ .|||.++|+|.-.|
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~-~~gg~lVivErGtp 229 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLL-APGGHLVIVERGTP 229 (484)
T ss_pred hccccCcchHHHHHHHHHHhc-cCCCeEEEEeCCCc
Confidence 356666666667888988988 99999999997544
No 167
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=55.64 E-value=21 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=24.6
Q ss_pred cccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCC
Q 037161 3 LHAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL 39 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~ 39 (99)
+=|-+..+-.+.|..+.+.| +||| |+|.|.++...
T Consensus 137 FIDadK~~yp~~le~~~~lL-r~GG-liv~DNvl~~G 171 (219)
T COG4122 137 FIDADKADYPEYLERALPLL-RPGG-LIVADNVLFGG 171 (219)
T ss_pred EEeCChhhCHHHHHHHHHHh-CCCc-EEEEeecccCC
Confidence 33455556678888999999 9977 55567776654
No 168
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=55.16 E-value=21 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+..+++++++.+ +.||.++++|+-.+
T Consensus 172 ~~~~~l~~l~~~~-~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERL-PKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHC-CC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHH-hhCCEEEEEeCCCC
Confidence 4788999999999 66799999998664
No 169
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=55.06 E-value=15 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhccCCCceEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~ 32 (99)
....++++++.| +|||.+++.
T Consensus 165 ~~ef~~~~~~~L-~pgG~lv~~ 185 (270)
T TIGR00417 165 TKEFYELLKKAL-NEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHHHh-CCCcEEEEc
Confidence 467889999999 999998875
No 170
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=54.74 E-value=22 Score=24.72 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
+...-.|-+..+.| |+.|.|.|++.--....-. .+.....+-.- . ..+.+....|++.|...|..++++.
T Consensus 97 E~~~p~lWRfw~~l-P~~G~i~IF~RSWY~~vl~---~rv~g~~~~~~---~-~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 97 ELDHDFLWRIHKAL-PERGEIGIFNRSHYEDVLV---VRVHGLIPKAI---W-ERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred HHcCchHHHHHHhC-CCCCeEEEEcCccccchhh---hhhcCCCCHHH---H-HHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 34556788899999 9999999998643332110 00000111000 1 2345567789999999999998875
No 171
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=54.57 E-value=15 Score=25.71 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
|..+--|.+..+.+ |.+|.++|+|.--.+...- ...+++---... .-.-|...+|+++|...|-.+++.+
T Consensus 115 E~~qwY~qRy~~~l-Pa~GeiviFdRSwYnr~gV------eRVmGfct~~q~-~rfl~eip~FE~mL~~~Gi~l~Kfw 184 (270)
T COG2326 115 ERGQWYFQRYVAHL-PAAGEIVIFDRSWYNRAGV------ERVMGFCTPKQY-KRFLREIPEFERMLVESGIILVKFW 184 (270)
T ss_pred hhccHHHHHHHHhC-CCCCeEEEechhhccccCe------eeccccCCHHHH-HHHHHHhhHHHHHHHhCCeEEEEEE
Confidence 34566788888899 9999999998644332110 011111000000 1234567899999999998888775
No 172
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=54.51 E-value=21 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=24.4
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
=|.+| --..|.++.++| +|||.++++-+.++
T Consensus 169 LDmp~--PW~~le~~~~~L-kpgg~~~~y~P~ve 199 (256)
T COG2519 169 LDLPD--PWNVLEHVSDAL-KPGGVVVVYSPTVE 199 (256)
T ss_pred EcCCC--hHHHHHHHHHHh-CCCcEEEEEcCCHH
Confidence 35555 557899999999 99999999766554
No 173
>PRK11524 putative methyltransferase; Provisional
Probab=53.93 E-value=19 Score=24.86 Aligned_cols=20 Identities=15% Similarity=0.584 Sum_probs=17.7
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
...|+.+++.| +|||.++|+
T Consensus 60 ~~~l~~~~rvL-K~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVL-KKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHh-CCCcEEEEE
Confidence 57889999999 999999885
No 174
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=53.34 E-value=13 Score=21.48 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHcCCCeeEEE
Q 037161 67 TKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~ 86 (99)
-+.|..++|.+.||.+++.-
T Consensus 2 ~Erel~~~L~~~Gf~v~R~~ 21 (88)
T PF01870_consen 2 FERELVKILWERGFAVVRAA 21 (88)
T ss_dssp HHHHHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHHHhCCcEEEEec
Confidence 35789999999999988754
No 175
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=53.05 E-value=19 Score=20.91 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHhcc--CC-CceEEEEee
Q 037161 7 SDEHCLKLLKNCYESIN--KE-DGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~--~p-gg~l~I~e~ 34 (99)
+|+++.++++.+.+++. .| +|+++|.+-
T Consensus 63 ~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 63 PDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred CHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 56778888888888772 23 389999774
No 176
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=52.29 E-value=32 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPE 38 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~ 38 (99)
....++++.+.+ +|+|.+++.+.....
T Consensus 134 ~~~~~~~~~~~l-~~~g~~~~~~~~~~~ 160 (257)
T COG0500 134 PAKALRELLRVL-KPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEeccCCC
Confidence 678999999999 999999888875443
No 177
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=52.18 E-value=18 Score=26.69 Aligned_cols=71 Identities=6% Similarity=-0.035 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
..+|+.+++.| +|||.+.+.--..+-.... ...+.....+..-... +...+-.++|++-..+.|-.+..+.
T Consensus 215 ~~fL~e~~RvL-kpGG~l~l~TD~~~y~~~~--~e~~~~~~~~~~~~~~-~~~~~i~TkyE~r~~~~G~~Iy~l~ 285 (390)
T PRK14121 215 EDFLNEALRVL-KPGGTLELRTDSELYFEFS--LELFLKLPKAKIEIKK-NAQLEVSSKYEDRWKKQNKDIYDLR 285 (390)
T ss_pred HHHHHHHHHHc-CCCcEEEEEEECHHHHHHH--HHHHHhCCCceeeccc-CCCCCCCCHHHHHHHHCCCCEEEEE
Confidence 57899999999 9999988843221100000 0000000000000000 1223345689999999998877764
No 178
>PRK06852 aldolase; Validated
Probab=52.13 E-value=16 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.9
Q ss_pred cccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 3 LHAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.-||++++....+.|..+.+ +..||++|+=
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~sGr~~ivp 37 (304)
T PRK06852 8 PLDVPEEMREEYIENYLEIT-KGTGRLMLFA 37 (304)
T ss_pred cCcCChhcChhHHHHHHHhh-CCCCCEEEEe
Confidence 44899999999999999999 8889988853
No 179
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=51.71 E-value=18 Score=25.16 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEee
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
.-+..+.+++.|+++||.++|--.
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 457888999999556666666443
No 180
>PRK13605 endoribonuclease SymE; Provisional
Probab=51.64 E-value=7.7 Score=23.54 Aligned_cols=15 Identities=27% Similarity=0.093 Sum_probs=11.3
Q ss_pred HHHHHHcCCCeeEEE
Q 037161 72 INLATAAGFSGIRFQ 86 (99)
Q Consensus 72 ~~ll~~aGf~~~~~~ 86 (99)
-.||++|||..=.-.
T Consensus 44 G~WLeeAGF~tG~~V 58 (113)
T PRK13605 44 GQWLEAAGFATGTAV 58 (113)
T ss_pred chhHHhhCCCCCCeE
Confidence 479999999874433
No 181
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=51.54 E-value=16 Score=23.72 Aligned_cols=64 Identities=22% Similarity=0.163 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
.+.-..+++-+++.| +|||+|.| |.+-+.. +..- +. .|..=..+..-..|..+||+.++-+.
T Consensus 62 s~~E~~l~~~~~~~l-~pg~~lfV-eY~~D~e----------T~~~---L~---~G~pp~~TrLG~~Ll~~GFtwfKdWY 123 (170)
T PF06557_consen 62 SPLEDELYKLFSRYL-EPGGRLFV-EYVEDRE----------TRRQ---LQ---RGVPPAETRLGFSLLKAGFTWFKDWY 123 (170)
T ss_dssp SHHHHHHHHHHHTT-----SEEEE-E-TT-HH----------HHHH---HH---TT--GGGSHHHHHHHTTT--EEEEEE
T ss_pred ChHHHHHHHHHHHHh-hhcCeEEE-EEecCHH----------HHHH---HH---cCCCcccchhHHHHHhCCcEEEeeee
Confidence 344568889999999 99999988 6653321 1111 11 23333344677889999999999886
Q ss_pred cC
Q 037161 88 FV 89 (99)
Q Consensus 88 ~~ 89 (99)
.+
T Consensus 124 fP 125 (170)
T PF06557_consen 124 FP 125 (170)
T ss_dssp --
T ss_pred cc
Confidence 64
No 182
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=51.35 E-value=13 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=15.6
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
..+.+.+.+.| +|||++++.
T Consensus 156 ~~~~~~l~~~L-kpgG~lvi~ 175 (212)
T PRK13942 156 PDIPKPLIEQL-KDGGIMVIP 175 (212)
T ss_pred ccchHHHHHhh-CCCcEEEEE
Confidence 34556778889 999998884
No 183
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=50.91 E-value=13 Score=26.21 Aligned_cols=38 Identities=8% Similarity=-0.072 Sum_probs=29.2
Q ss_pred CCCceecCHHHHHHHHHHcCCCeeEEEEc-CCCeeEEEE
Q 037161 60 SPRGKVRTKHEFINLATAAGFSGIRFQCF-VCNSWVMEF 97 (99)
Q Consensus 60 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~ 97 (99)
+..++..+..+..+.|+++||+.++.+-- ...+++.-+
T Consensus 281 tE~S~Kfslq~irq~laa~gl~~v~~wtd~~qdf~~~l~ 319 (321)
T COG4301 281 TEISRKFSLQAIRQQLAAAGLEPVQKWTDAIQDFGLSLA 319 (321)
T ss_pred hhhhhhCCHHHHHHHHHhcCCeEeeehhhhhhhhhhhee
Confidence 34788999999999999999999988743 344554443
No 184
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=50.34 E-value=22 Score=18.93 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.0
Q ss_pred CceecCHHHHHHHHHHcCCCee
Q 037161 62 RGKVRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~ 83 (99)
-|..-+.++..++|+..||+..
T Consensus 15 lG~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 15 LGLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred HCCCCCHHHHHHHHHHCCCeEE
Confidence 3667889999999999999874
No 185
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=49.64 E-value=30 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhccCCCceEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~ 32 (99)
-.++++++.+.| +|||++++.
T Consensus 195 ~~~i~~~a~~~L-~~gG~l~l~ 215 (251)
T TIGR03704 195 LRRVAAGAPDWL-APGGHLLVE 215 (251)
T ss_pred HHHHHHHHHHhc-CCCCEEEEE
Confidence 357888888999 999988753
No 186
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=48.65 E-value=17 Score=22.88 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEee
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
+.-++-|+++.+.| +|||.|.|+=+
T Consensus 69 ~TTl~Al~~al~lL-~~gG~i~iv~Y 93 (140)
T PF06962_consen 69 ETTLKALEAALELL-KPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHHHHHE-EEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhh-ccCCEEEEEEe
Confidence 44677889999999 99999998654
No 187
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=48.64 E-value=9.1 Score=24.31 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=6.9
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
+.+.+..+.+.+.+.|.||+|.++|.
T Consensus 8 d~~~r~~Vf~eVi~~~GPpDaTVvVs 33 (146)
T PF08952_consen 8 DEEKRESVFEEVISSQGPPDATVVVS 33 (146)
T ss_dssp ------------S-----TT-EEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34568899999999998889999884
No 188
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=48.21 E-value=45 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHHhccCC----CceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINKE----DGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~p----gg~l~I~e~ 34 (99)
+|+++.++++.+.++. .. +|+|+|.+-
T Consensus 66 ~D~~v~~vv~~I~~~a-~TG~~GDGkIfV~pV 96 (112)
T PRK10858 66 PDDIVDTCVDTIIRTA-QTGKIGDGKIFVFDV 96 (112)
T ss_pred ChHhHHHHHHHHHHHh-ccCCCCCcEEEEEEh
Confidence 5778888888888887 44 489999773
No 189
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=48.18 E-value=20 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
.++-.+||.++.+.| +||++|++=
T Consensus 206 ~e~K~~Il~~l~~~m-~~ga~l~~R 229 (276)
T PF03059_consen 206 AEPKEEILEHLAKHM-APGARLVVR 229 (276)
T ss_dssp --SHHHHHHHHHHHS--TTSEEEEE
T ss_pred cchHHHHHHHHHhhC-CCCcEEEEe
Confidence 346789999999999 999877764
No 190
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=47.76 E-value=20 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+||+++.+.+ +|||+|+-.-..+.
T Consensus 268 ~~iL~~a~~~l-k~GG~LVYSTCS~~ 292 (355)
T COG0144 268 KEILAAALKLL-KPGGVLVYSTCSLT 292 (355)
T ss_pred HHHHHHHHHhc-CCCCEEEEEccCCc
Confidence 56889999999 99998877665443
No 191
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=47.68 E-value=29 Score=23.95 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhccCCCceEEEEee
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
...++++++.+.| +|||.++ +|.
T Consensus 222 ~~~~ii~~a~~~L-~~gG~l~-~e~ 244 (284)
T TIGR00536 222 ILRQIIELAPDYL-KPNGFLV-CEI 244 (284)
T ss_pred HHHHHHHHHHHhc-cCCCEEE-EEE
Confidence 4678999999999 9998664 454
No 192
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=47.65 E-value=24 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHHcCCCeeEEE
Q 037161 66 RTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~ 86 (99)
-+..+|...|+++||++....
T Consensus 216 ddedswk~il~~~G~~v~~~l 236 (265)
T COG4822 216 DDEDSWKNILEKNGFKVEVYL 236 (265)
T ss_pred cchHHHHHHHHhCCceeEEEe
Confidence 345899999999999985443
No 193
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=47.54 E-value=15 Score=24.14 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhccCCCceEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~ 32 (99)
+..+.+.+.+.| +|||++++.
T Consensus 156 ~~~~~~~~~~~L-~~gG~lv~~ 176 (215)
T TIGR00080 156 GPKIPEALIDQL-KEGGILVMP 176 (215)
T ss_pred cccccHHHHHhc-CcCcEEEEE
Confidence 345677788999 999998874
No 194
>PRK13699 putative methylase; Provisional
Probab=47.45 E-value=37 Score=22.85 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhccCCCceEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I 31 (99)
+-....++.++++| +|||.+++
T Consensus 49 ew~~~~l~E~~RVL-Kpgg~l~i 70 (227)
T PRK13699 49 EWLQPACNEMYRVL-KKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHHHc-CCCCEEEE
Confidence 33568899999999 99987776
No 195
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=47.43 E-value=19 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.0
Q ss_pred HHHHHHHHhccCCCceEEEE
Q 037161 13 KLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 13 ~iL~~~~~al~~pgg~l~I~ 32 (99)
.+.+++.+.| +|||++++.
T Consensus 154 ~~~~~l~~~L-~~gG~lvi~ 172 (205)
T PRK13944 154 TIPSALVRQL-KDGGVLVIP 172 (205)
T ss_pred hhhHHHHHhc-CcCcEEEEE
Confidence 4556788899 999999773
No 196
>PRK10556 hypothetical protein; Provisional
Probab=47.00 E-value=27 Score=20.74 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCeeEEEE
Q 037161 68 KHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~ 87 (99)
..|..+.|+.|||+...+.+
T Consensus 5 PDEVArVLe~aGF~~D~vt~ 24 (111)
T PRK10556 5 PDEVARVLEKAGFTVDVVTQ 24 (111)
T ss_pred hHHHHHHHHhcCceEEEeec
Confidence 57999999999999987764
No 197
>PF02479 Herpes_IE68: Herpesvirus immediate early protein; InterPro: IPR003403 This regulatory protein is expressed from an immediate early gene in the cell cycle of Herpesviridae. The protein is known by various names including IE-68, US1, ICP22 and IR4.
Probab=46.76 E-value=24 Score=22.04 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=23.6
Q ss_pred hhhhchHhhhcCCCceecCHHHHHHHHHHcC
Q 037161 49 NSQIDVFMLTHSPRGKVRTKHEFINLATAAG 79 (99)
Q Consensus 49 ~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 79 (99)
..++|+.||-. -+.--+...|+.||+-.|
T Consensus 62 R~l~D~YlmGy--~~~Rl~~~~We~lLQlsp 90 (132)
T PF02479_consen 62 RLLLDFYLMGY--TRQRLTPACWERLLQLSP 90 (132)
T ss_pred HHHHHHHHHhh--ccCCCCHHHHHHHHhhCc
Confidence 46789999975 477778999999998766
No 198
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=46.68 E-value=23 Score=19.10 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=16.5
Q ss_pred ceecCHHHHHHHHHHcCCCeeEE
Q 037161 63 GKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 63 g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
|...+.++..++|+..||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 66889999999999999998874
No 199
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=46.34 E-value=20 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhccCCCceEEEEe
Q 037161 11 CLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e 33 (99)
+..+.+.+.+.| +|||++++.-
T Consensus 154 ~~~~~~~l~~~L-~~gG~lv~~~ 175 (212)
T PRK00312 154 APEIPRALLEQL-KEGGILVAPV 175 (212)
T ss_pred chhhhHHHHHhc-CCCcEEEEEE
Confidence 345677888999 9999988843
No 200
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=45.98 E-value=21 Score=20.29 Aligned_cols=26 Identities=4% Similarity=0.004 Sum_probs=21.4
Q ss_pred ceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 63 GKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 63 g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+-+.+++..++.|++.||+++....-
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCc
Confidence 34667889999999999999987643
No 201
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=45.37 E-value=25 Score=23.09 Aligned_cols=60 Identities=7% Similarity=0.142 Sum_probs=36.2
Q ss_pred HhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCc--------eecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 20 ESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRG--------KVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 20 ~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g--------~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
.++ ++|.|++|+|-++....+.. ....+ +-.. ++ -+|+...+.+.+++.|..+..+..+.
T Consensus 112 ~~l-~~G~rVLIVDDvvtTGgT~~------a~~~l--l~~a-Ga~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~ 179 (191)
T TIGR01744 112 EFL-SDQDRVLIIDDFLANGQAAH------GLVDI--AKQA-GAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQ 179 (191)
T ss_pred HhC-CCcCEEEEEEehhccChHHH------HHHHH--HHHC-CCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEe
Confidence 357 79999999999988664321 11111 1101 11 24554567778888898877776553
No 202
>PRK15450 signal transduction protein PmrD; Provisional
Probab=45.37 E-value=16 Score=20.90 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.6
Q ss_pred CceecCHHHHHHHHHHcC
Q 037161 62 RGKVRTKHEFINLATAAG 79 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aG 79 (99)
..++|+.+||+++...+|
T Consensus 68 ~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 68 SASCYSPDEWERQCKKAG 85 (85)
T ss_pred eccccCHHHHHHHhccCC
Confidence 678999999999988765
No 203
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=44.80 E-value=37 Score=17.96 Aligned_cols=27 Identities=4% Similarity=0.024 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCCCeeE
Q 037161 68 KHEFINLATAAGFSGIRFQCFVCNSWV 94 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~~~~~~v 94 (99)
..+...|++..|++++.+...++.+.+
T Consensus 40 ~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 40 VEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 456778888999988888776555543
No 204
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=44.68 E-value=22 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHcCCCeeEEEEc
Q 037161 66 RTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
-.++|++.+++++||++++-.-+
T Consensus 241 vnE~evE~~~q~~G~~IVrPEtl 263 (368)
T COG4421 241 VNEEEVERLLQRSGLTIVRPETL 263 (368)
T ss_pred hCHHHHHHHHHhcCcEEEechhc
Confidence 35789999999999999976543
No 205
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=44.65 E-value=42 Score=24.10 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
+++.-.|.++...| +|||.|+|.-..
T Consensus 89 ~~~~~~l~~~~~~l-~~g~~i~~~G~~ 114 (342)
T PRK09489 89 QEAQFQLMNLLSLL-PVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEEec
Confidence 45778999999999 999999997754
No 206
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=43.94 E-value=48 Score=22.28 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
+.+.-...+..+.+.| +|||.| |+|.++-
T Consensus 153 ~k~~y~~~~~~~~~ll-~~GG~i-i~dn~l~ 181 (234)
T PLN02781 153 DKPNYVHFHEQLLKLV-KVGGII-AFDNTLW 181 (234)
T ss_pred CHHHHHHHHHHHHHhc-CCCeEE-EEEcCCc
Confidence 3355567889999999 999864 4465543
No 207
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=43.72 E-value=31 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
.+-++++...| +|||++++.=++=+
T Consensus 91 l~~m~~i~~vL-K~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 91 LRAMAKIKCVL-KPGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHHHHhh-ccCCeEEEEeecCC
Confidence 34567788889 99999998655533
No 208
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=43.21 E-value=29 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCeeEE
Q 037161 68 KHEFINLATAAGFSGIRF 85 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~ 85 (99)
.+.|+..|+++||++.-+
T Consensus 81 ~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 81 PDSWKSILEAAGIKVETV 98 (103)
T ss_pred chhHHHHHHHCCCeeEEE
Confidence 457999999999988754
No 209
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=43.19 E-value=24 Score=18.00 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.8
Q ss_pred HHHHHHcCCCeeEEE
Q 037161 72 INLATAAGFSGIRFQ 86 (99)
Q Consensus 72 ~~ll~~aGf~~~~~~ 86 (99)
.++|++.||+++.+-
T Consensus 24 ~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 24 HRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHCCCEEEEec
Confidence 678999999998874
No 210
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=42.62 E-value=40 Score=18.47 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.9
Q ss_pred cCHHHHHHHHHHcCCCeeEEE
Q 037161 66 RTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~ 86 (99)
-+..|..+.|+.-||..++..
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEee
Confidence 357899999999999998764
No 211
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=41.87 E-value=27 Score=21.87 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=31.3
Q ss_pred hccCCCceEEEEeeecCCCCCCc---------------------hhhhhhhhhchHhhhcCCCceecCHHHHHHHHH
Q 037161 21 SINKEDGKLIVVEAVLPELPENS---------------------ATSKANSQIDVFMLTHSPRGKVRTKHEFINLAT 76 (99)
Q Consensus 21 al~~pgg~l~I~e~~~~~~~~~~---------------------~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~ 76 (99)
+| +||-+++|.-.++..++... ..+.....|-.+||...+.|.+-..++|..-+.
T Consensus 8 SL-k~gEki~iNGAVlr~DRkv~lellNdvtfLlEnhVlQpdqaTTPlRqlYF~aqmmlinp~gaeq~~~~F~~~l~ 83 (148)
T COG5443 8 SL-KPGEKIFINGAVLRVDRKVALELLNDVTFLLENHVLQPDQATTPLRQLYFIAQMMLINPAGAEQATEMFRKSLN 83 (148)
T ss_pred ee-cCCCEEEEeccEEEEeceeEEEeeccchHHHHhccCCccccCChHHHHHHHHHHHhcCHhhHHHHHHHHHHHHH
Confidence 57 88888888776654332110 001112334445555555788888888876654
No 212
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.55 E-value=26 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.4
Q ss_pred CceecCHHHHHHHHHHcCCCee
Q 037161 62 RGKVRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~ 83 (99)
.++--|..+-+.+|+++||+.+
T Consensus 130 ~~k~iSm~~sek~Lk~~Gfke~ 151 (152)
T COG4808 130 ASKGISMKQSEKLLKAAGFKEV 151 (152)
T ss_pred ccccccHHHHHHHHHhcCcccC
Confidence 5688899999999999999865
No 213
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=40.56 E-value=35 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.225 Sum_probs=11.3
Q ss_pred HHHcCCCeeEEEEc
Q 037161 75 ATAAGFSGIRFQCF 88 (99)
Q Consensus 75 l~~aGf~~~~~~~~ 88 (99)
-+.+||.+.++.|-
T Consensus 47 Y~~aGf~VtRiRP~ 60 (63)
T PHA00457 47 YVPAGFVVTRIRPE 60 (63)
T ss_pred hhccCcEEEEeccc
Confidence 45899999998864
No 214
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=40.35 E-value=37 Score=22.51 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=18.2
Q ss_pred ecCHHHHHHHHHHcCCCeeEEEE
Q 037161 65 VRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 65 ~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
....++|.+-|+++||+......
T Consensus 27 ~~A~~~Wn~~fe~~Gf~~a~~v~ 49 (197)
T cd04276 27 REGVLYWNKAFEKAGFKNAIIVK 49 (197)
T ss_pred HHHHHHHHHHHHhcCCCccEEEE
Confidence 44577999999999999876543
No 215
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.26 E-value=1.6e+02 Score=23.01 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCce---ecCHHHHHHHHHHcCCCee
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGK---VRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~---~rt~~e~~~ll~~aGf~~~ 83 (99)
.+.+++|++.++ . ||.+|+.-.-|.. +...++|-.++.. +|+ .-+.++..+-|+..||..-
T Consensus 207 ~~vv~~Lk~lA~----~-grtVi~tIHQPss-------~lf~lFD~l~lLs--~G~~vy~G~~~~~~~ff~~~G~~~P 270 (613)
T KOG0061|consen 207 LQVVQLLKRLAR----S-GRTVICTIHQPSS-------ELFELFDKLLLLS--EGEVVYSGSPRELLEFFSSLGFPCP 270 (613)
T ss_pred HHHHHHHHHHHh----C-CCEEEEEEeCCcH-------HHHHHHhHhhhhc--CCcEEEecCHHHHHHHHHhCCCCCC
Confidence 345666666554 3 8888877554422 2445677666654 444 6677889999999998843
No 216
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=40.16 E-value=39 Score=29.43 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCee----EEEEcCCCeeEEEEEC
Q 037161 71 FINLATAAGFSGI----RFQCFVCNSWVMEFYK 99 (99)
Q Consensus 71 ~~~ll~~aGf~~~----~~~~~~~~~~vie~~k 99 (99)
++.++.++|+.+. +|.++.++++|||++|
T Consensus 1569 f~~if~~~gLd~~lfPYrV~aT~pGcGVIEviP 1601 (1803)
T KOG0902|consen 1569 FKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIP 1601 (1803)
T ss_pred HHHHHHHcCCceEEeeeeeeccCCCCceEEeCC
Confidence 6778899998764 4556678999999976
No 217
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=40.00 E-value=72 Score=19.12 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHhccCC----CceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINKE----DGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~p----gg~l~I~e~ 34 (99)
+|+++.++.+-+.++. .. +|+|+|.+-
T Consensus 66 ~de~ve~vv~~I~~~a-~TG~~GDGkIfV~pV 96 (112)
T PRK10665 66 ADDQLDEVIDIISKAA-YTGKIGDGKIFVAEL 96 (112)
T ss_pred ChHhHHHHHHHHHHHh-ccCCCCCcEEEEEEh
Confidence 5777888888888776 43 489999773
No 218
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=39.72 E-value=77 Score=18.38 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=25.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
+.++++...+++++.+.++.-||.++-.|..
T Consensus 17 ~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~w 47 (97)
T CHL00123 17 DLNEEELLKWIENYKKLLRKRGAKNISVQNR 47 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4578899999999999995568888777753
No 219
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.64 E-value=40 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.6
Q ss_pred ccccCChHHHHHHHHHHHHh
Q 037161 2 ILHAWSDEHCLKLLKNCYES 21 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~a 21 (99)
+++++++++..++|+.++++
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 68899999999999998876
No 220
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=38.53 E-value=55 Score=23.58 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=24.8
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEcCCCeeEEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCFVCNSWVME 96 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie 96 (99)
+=..+|..++..+|++.||..+ ...++...++|
T Consensus 92 hLFiyTKp~~~~lFk~~GF~~i--~~~~~~ivlmE 124 (352)
T COG3053 92 HLFIYTKPEYAALFKQCGFSEI--ASAENVIVLME 124 (352)
T ss_pred eEEEEechhHHHHHHhCCceEe--eccCceEEEee
Confidence 5678999999999999999865 34444445554
No 221
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=38.48 E-value=16 Score=17.25 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.6
Q ss_pred eecCHHHHHHHHHHcC
Q 037161 64 KVRTKHEFINLATAAG 79 (99)
Q Consensus 64 ~~rt~~e~~~ll~~aG 79 (99)
++|....|+.+|-++|
T Consensus 18 K~rv~kAWRNiFvqag 33 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAG 33 (34)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 5677889999999988
No 222
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=38.46 E-value=35 Score=20.48 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCeeEEEE
Q 037161 68 KHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~ 87 (99)
.+|..+.|+.+||+...+.+
T Consensus 5 pdeva~vle~~gf~~d~v~~ 24 (111)
T PF09400_consen 5 PDEVARVLEKAGFERDYVTD 24 (111)
T ss_dssp HHHHHHHHHHTT-EEEEEET
T ss_pred hHHHHHHHHhcCceEEEeec
Confidence 67999999999999887753
No 223
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=38.42 E-value=47 Score=18.13 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCeeEEE
Q 037161 68 KHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~ 86 (99)
...+++-+.++||+.++++
T Consensus 5 V~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 5 VRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHcCCCcceee
Confidence 4578899999999999997
No 224
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=38.08 E-value=48 Score=25.28 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
+...-.|-+..+.| |+.|.|.|++.--.+..- ..+.....+-.- . ..+.+...+|++.|...|..++++.
T Consensus 81 E~~~~flwRfw~~l-P~~G~I~IFdRSWY~~vl---verv~g~~~~~~---~-~~~~~~I~~FE~~L~~~G~~IlKff 150 (493)
T TIGR03708 81 ERERPPMWRFWRRL-PPKGKIGIFFGSWYTRPL---IERLEGRIDEAK---L-DSHIEDINRFERMLADDGALILKFW 150 (493)
T ss_pred HhcCcHHHHHHHhC-CCCCeEEEEcCcccchhh---HHHhcCCCCHHH---H-HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 44566788999999 999999998864332211 000000011000 1 2345567799999999999988875
No 225
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=38.05 E-value=30 Score=16.57 Aligned_cols=16 Identities=0% Similarity=0.131 Sum_probs=12.5
Q ss_pred ccccCChHHHHHHHHH
Q 037161 2 ILHAWSDEHCLKLLKN 17 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~ 17 (99)
|++|.+.+++..|+.=
T Consensus 18 Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 18 VFDDVPPDKAQEIMLL 33 (36)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 6777888888888764
No 226
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=38.04 E-value=58 Score=16.71 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHcCCCeeEEE
Q 037161 66 RTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~ 86 (99)
.+.++-.+.|+++||+.....
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 678899999999999655554
No 227
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=37.90 E-value=36 Score=18.29 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.6
Q ss_pred eecCHHHHHHHHHHcC
Q 037161 64 KVRTKHEFINLATAAG 79 (99)
Q Consensus 64 ~~rt~~e~~~ll~~aG 79 (99)
--||.+||.+++++.|
T Consensus 13 TGk~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 13 TGKTLDEWLALAREGG 28 (61)
T ss_pred HCcCHHHHHHHHHHhC
Confidence 3467889999998884
No 228
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=37.40 E-value=43 Score=16.60 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.3
Q ss_pred ecCHHHHHHHHHHcCCCee
Q 037161 65 VRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 65 ~rt~~e~~~ll~~aGf~~~ 83 (99)
..+.+++.++..+.||...
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFT 44 (49)
T ss_pred cCCHHHHHHHHHHcCCCCC
Confidence 4578899999999998754
No 229
>PRK09662 GspL-like protein; Provisional
Probab=37.03 E-value=31 Score=24.32 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCeeEEEEc
Q 037161 69 HEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~~~~~~ 88 (99)
..|.++|+++|++..++.|-
T Consensus 8 q~wl~~l~~agl~~~~~vPD 27 (286)
T PRK09662 8 RNIAQWLQANGITRATVAPD 27 (286)
T ss_pred HHHHHHHHHcCCcceeecCC
Confidence 57999999999999999873
No 230
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=36.61 E-value=28 Score=19.20 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=13.9
Q ss_pred CceecCHHHHHHHHHHcCCCeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
+....|-+|..+.|++.||.+.+
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vTQ 38 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVTQ 38 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--H
T ss_pred HCCcCCHHHHHHHHHHcCCCcch
Confidence 34577888999999999988643
No 231
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=36.25 E-value=64 Score=16.44 Aligned_cols=35 Identities=9% Similarity=0.262 Sum_probs=24.1
Q ss_pred cccCChHHHHHHHHHHHHhcc-----CCCceEEEEeeecC
Q 037161 3 LHAWSDEHCLKLLKNCYESIN-----KEDGKLIVVEAVLP 37 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~-----~pgg~l~I~e~~~~ 37 (99)
+...++++-.+|++.+.+++. +|+...++++.+-+
T Consensus 9 ~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~ 48 (61)
T PRK02220 9 IEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSK 48 (61)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeCh
Confidence 456789999999999988772 34555555555433
No 232
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=36.24 E-value=69 Score=20.58 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 6 WSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
++.++..++...+..++ +.|++|+|+=
T Consensus 86 p~~~~l~~~v~~i~~~~-~~g~kVvVHC 112 (180)
T COG2453 86 PDLEDLDKIVDFIEEAL-SKGKKVVVHC 112 (180)
T ss_pred CcHHHHHHHHHHHHHHH-hcCCeEEEEc
Confidence 35577889999999998 7777777753
No 233
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=35.51 E-value=66 Score=24.57 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
|...-.|-+..+.| |+.|.+.|+|.--.+.--. ++.....+-.-. ..+.+...+|++.|...|..++++.
T Consensus 340 E~~~~~lwRf~~~l-P~~G~i~iFdRSwY~~vlv---erv~g~~~~~~~----~~~~~~I~~FE~~L~~~G~~ivKf~ 409 (493)
T TIGR03708 340 EKAQHYLWRFWRHI-PRRGRITIFDRSWYGRVLV---ERVEGFCSEAEW----LRAYGEINDFEEQLTEHGAIVVKFW 409 (493)
T ss_pred HHcCcHHHHHHHhC-CCCCeEEEEcCCccCCcce---eeecCCCCHHHH----HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 44666788999999 9999999998643322110 000000010000 2345567789999999999998875
No 234
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.45 E-value=38 Score=18.65 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
|....+++=+.-+++ ++|++++|.|.
T Consensus 13 Dp~~kqlilnmd~sm-~~~skfii~eL 38 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSM-QLGSKFIIEEL 38 (71)
T ss_pred ChhHHHHhhhccccC-CCCCCeeEEEe
Confidence 555677778888889 99999999773
No 235
>PRK04280 arginine repressor; Provisional
Probab=35.33 E-value=40 Score=21.28 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=19.0
Q ss_pred CceecCHHHHHHHHHHcCCCeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
+-...|-+|..+.|++.||.+.+
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCeeh
Confidence 45678889999999999998754
No 236
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=35.23 E-value=32 Score=18.04 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=14.9
Q ss_pred eecCHHHHHHHHHHcCCCeeE
Q 037161 64 KVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 64 ~~rt~~e~~~ll~~aGf~~~~ 84 (99)
-.--.+||+.+|..+|.+..+
T Consensus 23 ~~glp~ew~~~l~~~~it~~~ 43 (59)
T PF00786_consen 23 FTGLPPEWEKLLKSSGITEEE 43 (59)
T ss_dssp EES--HHHHHHHHSCTTSHHH
T ss_pred cccCCHHHHhhccccCCCHHH
Confidence 346688999999999977543
No 237
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=34.94 E-value=1e+02 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCC----CeeEEEEcCCCeeEEEEEC
Q 037161 69 HEFINLATAAGF----SGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 69 ~e~~~ll~~aGf----~~~~~~~~~~~~~vie~~k 99 (99)
.-+..++++.|+ ...++.+++...++||.++
T Consensus 75 ~lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ 109 (311)
T cd05167 75 SLFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVP 109 (311)
T ss_pred HHHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeC
Confidence 356778888886 4456677778899999875
No 238
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=34.92 E-value=57 Score=23.12 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=22.3
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
|.|+++.+.++++.+.+..+.-|+.++|.
T Consensus 160 ~~~~~~~~~~l~~~l~~~~~~~~~~~~vt 188 (311)
T PF06258_consen 160 YRWDEEDAERLLDQLAALAAAYGGSLLVT 188 (311)
T ss_pred cccCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 78999999999999998883334467664
No 239
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=34.75 E-value=92 Score=17.79 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 6 WSDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
-+++++.+++.-++=.+ |...|-+.
T Consensus 20 ~~~~~~l~~ia~~Rl~~--P~~~I~~~ 44 (94)
T smart00876 20 VSPEEFLRTIAAARLAL--PDAGIRLS 44 (94)
T ss_pred CCHHHHHHHHHHHHHHC--CCcceEEe
Confidence 47788888888777776 56666665
No 240
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=34.66 E-value=81 Score=17.12 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHhccCCC-ceEEEEeee
Q 037161 7 SDEHCLKLLKNCYESINKED-GKLIVVEAV 35 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pg-g~l~I~e~~ 35 (99)
+..+..++++++.+.+ +|+ +.|.|+...
T Consensus 40 ~~~~~~~l~~~l~~~i-~~~~d~i~i~~l~ 68 (78)
T PF09827_consen 40 TNAELRKLRRELEKLI-DPDEDSIRIYPLC 68 (78)
T ss_dssp -HHHHHHHHHHHHHHS-CTTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhC-CCCCCEEEEEEeC
Confidence 5677889999999999 887 899988753
No 241
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.21 E-value=1.6e+02 Score=20.70 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 13 KLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 13 ~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
.++--+...| +|||-+...-.-.++... + ++... .--.++..-..+++++.||.++.+.++
T Consensus 206 ~~~~~aa~~L-~~gGlfaFSvE~l~~~~~------f-------~l~ps-~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 206 GLFAGAAGLL-APGGLFAFSVETLPDDGG------F-------VLGPS-QRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hHHHHHHHhc-CCCceEEEEecccCCCCC------e-------ecchh-hhhccchHHHHHHHHhcCceEEEeecc
Confidence 4556677888 998866653333333211 0 11111 223456667899999999999999876
No 242
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=34.18 E-value=89 Score=17.55 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=24.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
+-++++..++++++.+.+..-||.+.=+|..
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~~ 42 (92)
T PF01250_consen 12 DLSEEEIKKLIERVKKIIEKNGGVVRSVENW 42 (92)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Confidence 4578899999999999984567777767753
No 243
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=34.18 E-value=42 Score=13.91 Aligned_cols=9 Identities=33% Similarity=0.837 Sum_probs=7.1
Q ss_pred HHHHHHHHh
Q 037161 13 KLLKNCYES 21 (99)
Q Consensus 13 ~iL~~~~~a 21 (99)
.||++|..+
T Consensus 4 eiL~~CI~s 12 (20)
T PF05924_consen 4 EILQECIGS 12 (20)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 789998754
No 244
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=33.37 E-value=1.1e+02 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEeee
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
..+.++++++.| +++|+++++=..
T Consensus 567 ~~~a~~~~rEll-~ddg~lv~y~ah 590 (875)
T COG1743 567 FREAFQAVRELL-KDDGRLVTYYAH 590 (875)
T ss_pred HHHHHHHHHHhc-CCCCeEEEEEec
Confidence 467788888888 999999886544
No 245
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=33.12 E-value=1.8e+02 Score=20.60 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+-...+...+.+.| +|||.+++.-.+ .+. ..+..+.+++ ||+..+...-
T Consensus 236 ~vL~~l~~~~~~~l-~~~G~lIlSGIl-~~~----------------------------~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 236 DVLLELAPDIASLL-KPGGYLILSGIL-EEQ----------------------------EDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp HHHHHHHHHCHHHE-EEEEEEEEEEEE-GGG----------------------------HHHHHHHHHT-TEEEEEEEEE
T ss_pred HHHHHHHHHHHHhh-CCCCEEEEcccc-HHH----------------------------HHHHHHHHHC-CCEEEEEEEE
Confidence 34455666666677 777766664332 211 2345556665 8888877765
Q ss_pred CCCeeE
Q 037161 89 VCNSWV 94 (99)
Q Consensus 89 ~~~~~v 94 (99)
+...++
T Consensus 285 ~~W~~l 290 (295)
T PF06325_consen 285 GEWVAL 290 (295)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 444433
No 246
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.97 E-value=1.1e+02 Score=20.64 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=17.8
Q ss_pred CceecCHHHHHHHHHHcCCCeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
+|..||.++..++++ +|..-+-
T Consensus 198 ~GGi~s~edi~~l~~-~G~~~vi 219 (234)
T PRK13587 198 SGGIRHQQDIQRLAS-LNVHAAI 219 (234)
T ss_pred eCCCCCHHHHHHHHH-cCCCEEE
Confidence 789999999999985 6866553
No 247
>PRK03094 hypothetical protein; Provisional
Probab=32.70 E-value=52 Score=18.73 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 63 GKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 63 g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
|-+.+++..++-|++-||+++.+..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCc
Confidence 4567788999999999999998854
No 248
>PLN02476 O-methyltransferase
Probab=32.62 E-value=1.8e+02 Score=20.45 Aligned_cols=76 Identities=8% Similarity=-0.022 Sum_probs=41.1
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCee
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 83 (99)
-|-+..+-...++.+.+-| +|||.|++ |.++-.+.-.... . . ..+.....+|.+++.+..=-..
T Consensus 200 IDa~K~~Y~~y~e~~l~lL-~~GGvIV~-DNvL~~G~V~d~~-----~--------~-d~~t~~ir~fn~~v~~d~~~~~ 263 (278)
T PLN02476 200 VDADKRMYQDYFELLLQLV-RVGGVIVM-DNVLWHGRVADPL-----V--------N-DAKTISIRNFNKKLMDDKRVSI 263 (278)
T ss_pred ECCCHHHHHHHHHHHHHhc-CCCcEEEE-ecCccCCcccCcc-----c--------C-CHHHHHHHHHHHHHhhCCCEEE
Confidence 3445566778888889989 99886554 7666544211000 0 0 1122235677666665442223
Q ss_pred EEEEcCCCeeEE
Q 037161 84 RFQCFVCNSWVM 95 (99)
Q Consensus 84 ~~~~~~~~~~vi 95 (99)
.+.|++.+..++
T Consensus 264 ~llPigDGl~i~ 275 (278)
T PLN02476 264 SMVPIGDGMTIC 275 (278)
T ss_pred EEEEeCCeeEEE
Confidence 334776555544
No 249
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=32.56 E-value=60 Score=22.45 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCCCceEEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~ 32 (99)
-..+++.+++.| +|||++.++
T Consensus 149 le~~i~~a~~~l-k~~G~l~~V 169 (248)
T COG4123 149 LEDLIRAAAKLL-KPGGRLAFV 169 (248)
T ss_pred HHHHHHHHHHHc-cCCCEEEEE
Confidence 356888999999 999998875
No 250
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=32.44 E-value=23 Score=23.98 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
..-.|.+..+.| |+.|.+.|++.--....- ..+.....|-.- . ..+......|++.|..-|..++++.
T Consensus 74 ~~p~lwRfw~~l-P~~G~I~if~rSWY~~~l---~~rv~~~~~~~~---~-~~~~~~I~~FEr~L~~~G~~IiKff 141 (228)
T PF03976_consen 74 RRPFLWRFWRAL-PARGQIGIFDRSWYEDVL---VERVEGFIDEAE---W-ERRLEEINRFERMLADDGTLIIKFF 141 (228)
T ss_dssp TS-TTHHHHTTS---TT-EEEEES-GGGGGT---HHHHTTSSTHHH---H-HHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCcHHHHHHhC-CCCCEEEEEecchhhHHH---HHHHhcCCCHHH---H-HHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 446788889999 999999999864332211 000000011100 0 2345557789999999998888875
No 251
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=32.42 E-value=84 Score=22.42 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
-.++.-.|.++.+.+ +|||.|++.-.
T Consensus 49 ~~e~e~qLa~ll~~~-~~g~~i~v~g~ 74 (300)
T COG2813 49 KAEAEFQLAQLLARL-PPGGEIVVVGE 74 (300)
T ss_pred hHHHHHHHHHHHhhC-CCCCeEEEEec
Confidence 345788899999999 99999998754
No 252
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=32.40 E-value=80 Score=16.42 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHcCCCeeEEEEcCC
Q 037161 67 TKHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
+......|+++.|++...+...++
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGG 61 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCC
Confidence 466778888899999877766544
No 253
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=32.37 E-value=56 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.2
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
.|+-| |.+.+|++.||++.+.+++.
T Consensus 190 EGrnr---QVRRm~~a~G~~V~~L~R~~ 214 (248)
T COG1187 190 EGRNR---QVRRMFEAVGLEVLRLKRIR 214 (248)
T ss_pred CCcCH---HHHHHHHHcCCEEeEEEEEE
Confidence 67764 88999999999999998764
No 254
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=32.26 E-value=49 Score=24.20 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.0
Q ss_pred ceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 63 GKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 63 g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
+..++.+|+.++++++||..+.--.
T Consensus 334 ~~~~~~eel~~~i~~aG~~p~~Rdt 358 (370)
T COG1060 334 GDWRSVEELAALIKEAGRIPVERDT 358 (370)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeecc
Confidence 4589999999999999999876543
No 255
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=32.23 E-value=43 Score=23.49 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=15.9
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
....+.|+++| +++|.++..
T Consensus 170 ~eFy~~~~~~L-~~~Gi~v~q 189 (282)
T COG0421 170 EEFYEGCRRAL-KEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHHhc-CCCcEEEEe
Confidence 57788889999 888877665
No 256
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=32.14 E-value=35 Score=19.24 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=16.6
Q ss_pred CceecCHHHHHHHHHHcCCCeeEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
-|...|.+++...|+..|+..+.-
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~ 26 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSN 26 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS
T ss_pred CCcccCHHHHHHHHHHcCCCcCCC
Confidence 578889999999999999988853
No 257
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=31.98 E-value=53 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhccCCCceEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I 31 (99)
-.+|++++.+.| +|||.+++
T Consensus 248 ~~~il~~a~~~L-~~gG~l~l 267 (506)
T PRK01544 248 YFIIAENAKQFL-KPNGKIIL 267 (506)
T ss_pred HHHHHHHHHHhc-cCCCEEEE
Confidence 456888889999 99998765
No 258
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=31.97 E-value=58 Score=19.04 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.5
Q ss_pred ceecCHHHHHHHHHHcCCCeeEEE
Q 037161 63 GKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 63 g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
..+.+.+|+..|.+.+|++++...
T Consensus 5 ~~~~~l~El~~L~~t~g~~vv~~~ 28 (95)
T PF13167_consen 5 DFEESLEELEELAETAGYEVVGTV 28 (95)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345668899999999999998654
No 259
>PHA02517 putative transposase OrfB; Reviewed
Probab=31.85 E-value=38 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.0
Q ss_pred CCCceecCHHHHHHHHHHcCCCeeEE
Q 037161 60 SPRGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 60 ~~~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
+++|.+++..+|..++++.|.+..-.
T Consensus 175 sD~G~~y~s~~~~~~~~~~gi~~~~~ 200 (277)
T PHA02517 175 SDKGSQYVSLAYTQRLKEAGIRASTG 200 (277)
T ss_pred cccccccchHHHHHHHHHcCcccccC
Confidence 57999999999999999999665543
No 260
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=31.77 E-value=62 Score=21.17 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=32.2
Q ss_pred HhccCCCceEEEEeeecCCCCCCchhhhhhh-----hhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 20 ESINKEDGKLIVVEAVLPELPENSATSKANS-----QIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 20 ~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~-----~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
..+ .+|-+++|+|-++....+.....+... ..+...+ -.|.. .+.+.+++.|.++..+..
T Consensus 117 g~~-~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vl------vdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 117 GDL-KPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITV------VDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred ccC-CCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEE------EECCc-ChHHHHHHcCCcEEEEEE
Confidence 356 788999999998886543210000000 0111111 13443 467777888877766654
No 261
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.75 E-value=34 Score=14.89 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.7
Q ss_pred CCCceEEEEee
Q 037161 24 KEDGKLIVVEA 34 (99)
Q Consensus 24 ~pgg~l~I~e~ 34 (99)
.++|.|+|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 47889999883
No 262
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=31.68 E-value=1.1e+02 Score=20.27 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
+++-...++||.....-+ ++||.++-+-.-
T Consensus 129 ~~P~~~~iaile~~~~rl-~~gg~lvqftYg 158 (194)
T COG3963 129 NFPMHRRIAILESLLYRL-PAGGPLVQFTYG 158 (194)
T ss_pred cCcHHHHHHHHHHHHHhc-CCCCeEEEEEec
Confidence 577888999999999999 998888877654
No 263
>COG1438 ArgR Arginine repressor [Transcription]
Probab=31.62 E-value=46 Score=21.26 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=17.1
Q ss_pred CceecCHHHHHHHHHHcCCCeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
.-+-.|-+|..++|++.||++.+
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vTQ 39 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVTQ 39 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEeh
Confidence 45677888888888888887544
No 264
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=31.44 E-value=1.1e+02 Score=22.52 Aligned_cols=79 Identities=6% Similarity=0.026 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHhccCCCceEEEE----eeecCCCCC-CchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCC
Q 037161 6 WSDEHCLKLLKNCYESINKEDGKLIVV----EAVLPELPE-NSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGF 80 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg~l~I~----e~~~~~~~~-~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf 80 (99)
-++++..++++++...- -|.++-+++ ++.++.... ..+.+.....+...+.+. .+..-....+.+.++.|||
T Consensus 104 I~~~dv~~~~~~a~~~~-~~~~~~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~lv--~~~~~~~~~~~~a~~~aGl 180 (420)
T PRK09472 104 VTQEDVENVVHTAKSVR-VRDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLI--TCHNDMAKNIVKAVERCGL 180 (420)
T ss_pred eCHHHHHHHHHHhhccC-CCCCCEEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEEE--EEchHHHHHHHHHHHHcCC
Confidence 46788889998886543 344454433 344554321 111111122222222222 2344556677889999999
Q ss_pred CeeEEEE
Q 037161 81 SGIRFQC 87 (99)
Q Consensus 81 ~~~~~~~ 87 (99)
++..+..
T Consensus 181 ~v~~iv~ 187 (420)
T PRK09472 181 KVDQLIF 187 (420)
T ss_pred eEeeEEe
Confidence 9998864
No 265
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.43 E-value=55 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCeeEEEE
Q 037161 68 KHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~ 87 (99)
=.+|.+-+++.||++..+..
T Consensus 39 C~~w~~~mk~~Gf~Vk~~~~ 58 (149)
T COG3019 39 CDEWAQHMKANGFEVKVVET 58 (149)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 35899999999999987754
No 266
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=31.33 E-value=77 Score=19.96 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEeeecCC
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVEAVLPE 38 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~ 38 (99)
-+++.+++++|.++. ..+-+++|- +.+.+
T Consensus 60 G~eA~~Lv~r~~~av-~~~~KVli~-FrlgD 88 (137)
T PF12101_consen 60 GEEAKELVRRCQKAV-DEDKKVLIG-FRLGD 88 (137)
T ss_pred cHHHHHHHHHHHhhc-ccCCcEEEE-EEecC
Confidence 478999999999999 887777764 44443
No 267
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=31.22 E-value=63 Score=18.33 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred CceecCHHHHHHHHHHcCCCeeEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
|.+..+.+++.+.|..|||...+-
T Consensus 55 GaKH~~q~~Lnq~L~~Ag~~~LK~ 78 (84)
T PF13319_consen 55 GAKHFDQEELNQRLIDAGWEGLKD 78 (84)
T ss_pred ccccCCHHHHHHHHHHcCccccch
Confidence 788888999999999999987654
No 268
>PRK00536 speE spermidine synthase; Provisional
Probab=30.93 E-value=60 Score=22.53 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.6
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
....+.|+++| +|||.++..
T Consensus 151 ~~fy~~~~~~L-~~~Gi~v~Q 170 (262)
T PRK00536 151 IHKIDGLKRML-KEDGVFISV 170 (262)
T ss_pred hHHHHHHHHhc-CCCcEEEEC
Confidence 45668899999 999977763
No 269
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=30.82 E-value=34 Score=20.02 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCCCceEEEEeeec
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVL 36 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~ 36 (99)
...++.+.+.+ +|+|+++++-...
T Consensus 69 ~~~~~~~~~~l-~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLL-RPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHE-EEEEEEEEESSTS
T ss_pred HHHHHHHHHHh-ccCCEEEEEEccC
Confidence 35788888999 9999999988654
No 270
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=30.58 E-value=67 Score=20.93 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=34.2
Q ss_pred hccCCCceEEEEeeecCCCCCCchhhhhhhhhc--hHhhhcCCCceecCH-HHHHHHHHHcCCCeeEEEEcC
Q 037161 21 SINKEDGKLIVVEAVLPELPENSATSKANSQID--VFMLTHSPRGKVRTK-HEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 21 al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~d--l~m~~~~~~g~~rt~-~e~~~ll~~aGf~~~~~~~~~ 89 (99)
++ .+|.+++|+|-++....+.. +....+.. ....... ---.|+. ..++.+.++.|+.+..+..+.
T Consensus 110 ~~-~~G~rVlIVDDvitTG~T~~--~ai~ll~~aGa~vv~v~-~vvd~~~~~g~~~l~~~~gv~v~sl~~~~ 177 (187)
T PRK12560 110 GI-EKGDRVAIIDDTLSTGGTVI--ALIKAIENSGGIVSDVI-CVIEKTQNNGRKKLFTQTGINVKSLVKID 177 (187)
T ss_pred CC-CCcCEEEEEEeccccCHHHH--HHHHHHHHCCCEEEEEE-EEEEecccchHHHHhhccCCcEEEEEEEE
Confidence 45 68899999999888654321 00000000 0000000 0123442 446777788898888777654
No 271
>PLN02823 spermine synthase
Probab=30.38 E-value=57 Score=23.44 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=14.1
Q ss_pred HHHHH-HHHHhccCCCceEEE
Q 037161 12 LKLLK-NCYESINKEDGKLIV 31 (99)
Q Consensus 12 ~~iL~-~~~~al~~pgg~l~I 31 (99)
...++ .|++.| +|||.+++
T Consensus 199 ~eF~~~~~~~~L-~p~Gvlv~ 218 (336)
T PLN02823 199 KSFYERIVKPKL-NPGGIFVT 218 (336)
T ss_pred HHHHHHHHHHhc-CCCcEEEE
Confidence 45676 788888 88887654
No 272
>PRK09213 pur operon repressor; Provisional
Probab=30.25 E-value=50 Score=23.11 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=16.4
Q ss_pred HhccCCCceEEEEeeecCCCC
Q 037161 20 ESINKEDGKLIVVEAVLPELP 40 (99)
Q Consensus 20 ~al~~pgg~l~I~e~~~~~~~ 40 (99)
+++ ++|.+++|+|-++....
T Consensus 191 ~~l-~~G~rVLIVDDv~~TGg 210 (271)
T PRK09213 191 RSL-KEGSRVLIVDDFMKAGG 210 (271)
T ss_pred hhc-CCcCEEEEEeeecccCH
Confidence 568 89999999999887653
No 273
>PRK06132 hypothetical protein; Provisional
Probab=30.24 E-value=53 Score=23.98 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCCceEEEEeeec
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVL 36 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~ 36 (99)
..+.++++..| .||+.|+|-|.-+
T Consensus 321 ~~~~~~i~~~l-~~gssl~vsD~~~ 344 (359)
T PRK06132 321 PDFRRRIAALL-TPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHHhc-CCCceEEEcCCCC
Confidence 35789999999 9999999999765
No 274
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=30.12 E-value=35 Score=24.82 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCCCeeEEE
Q 037161 67 TKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~ 86 (99)
+.+.|+..++.|||+.+.+.
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 67899999999999988764
No 275
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=29.96 E-value=67 Score=20.94 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccCCCceEEEE
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
+.+.+++..+.+.| ..|.+++|+
T Consensus 117 ~~~~~i~~eL~~~L-~~g~~V~vH 139 (168)
T PF05706_consen 117 AAAWQILEELAARL-ENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHHHHHH-HTT--EEEE
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEE
Confidence 35778999999999 888888875
No 276
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=29.94 E-value=12 Score=21.16 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHHhccCCCc
Q 037161 7 SDEHCLKLLKNCYESINKEDG 27 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg 27 (99)
.|+++.++|..|.+ +|||
T Consensus 27 ~d~~~~~~l~~I~~---k~Ga 44 (78)
T PF09077_consen 27 TDKEERKLLQSIAE---KPGA 44 (78)
T ss_dssp SSSHHHHHHHTTSS---S-S-
T ss_pred CCHHHHHHHHHHcc---cccH
Confidence 56777777766654 5554
No 277
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.87 E-value=46 Score=19.25 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=16.6
Q ss_pred CceecCHHHHHHHHHHcCCCe
Q 037161 62 RGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~ 82 (99)
|.-.||.+++.+-|+..||..
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT-
T ss_pred CCCCCCHHHHHHHHHhcCcCC
Confidence 788899999999999999885
No 278
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=29.81 E-value=62 Score=18.29 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=12.8
Q ss_pred hHhhhcCCCceecCHHHHHHHHH
Q 037161 54 VFMLTHSPRGKVRTKHEFINLAT 76 (99)
Q Consensus 54 l~m~~~~~~g~~rt~~e~~~ll~ 76 (99)
|+||.. .|+.+|.+++.+++.
T Consensus 8 L~mml~--~~~~~t~~~L~~~i~ 28 (77)
T TIGR03853 8 LNLMLA--SGEPYTRESLKAAIE 28 (77)
T ss_pred HHHHHH--cCCCcCHHHHHHHHH
Confidence 345543 567777777766655
No 279
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=29.59 E-value=59 Score=18.11 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=20.9
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
.|..--..++..+|+..||++..+-..
T Consensus 12 t~~~GlA~~~a~~L~~~Gf~v~~~~n~ 38 (90)
T PF13399_consen 12 TGVSGLAARVADALRNRGFTVVEVGNA 38 (90)
T ss_pred cCCcCHHHHHHHHHHHCCCceeecCCC
Confidence 455556778999999999999877543
No 280
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=29.52 E-value=46 Score=16.38 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCCeeE
Q 037161 70 EFINLATAAGFSGIR 84 (99)
Q Consensus 70 e~~~ll~~aGf~~~~ 84 (99)
++..-+.+|||..+.
T Consensus 2 e~a~Rl~~AgF~~i~ 16 (41)
T PF11590_consen 2 ETAERLRSAGFATIG 16 (41)
T ss_dssp HHHHHHHHTT-EEEC
T ss_pred hHHHHHHHHhHHHhc
Confidence 677889999998764
No 281
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=29.34 E-value=54 Score=15.96 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCC
Q 037161 68 KHEFINLATAAGFS 81 (99)
Q Consensus 68 ~~e~~~ll~~aGf~ 81 (99)
..+|..++..+|.+
T Consensus 28 p~~w~~l~~~~~is 41 (42)
T cd00132 28 PPDLQSLFQTAGIS 41 (42)
T ss_pred CHHHHHHHHHccCC
Confidence 45999999998854
No 282
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=29.30 E-value=1.4e+02 Score=20.19 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=15.9
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
.|-+...+...++|++.||++....
T Consensus 26 ~g~~~D~~~l~~~f~~lgF~V~~~~ 50 (241)
T smart00115 26 NGTDVDAENLTELFQSLGYEVHVKN 50 (241)
T ss_pred CCcHHHHHHHHHHHHHCCCEEEEec
Confidence 4555566677777777777665443
No 283
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=29.16 E-value=48 Score=19.37 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.8
Q ss_pred cCChHHHHHHHHHHHHhccCCCce
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGK 28 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~ 28 (99)
-|++++-+.||+.+..-- ...|+
T Consensus 6 ~WS~eDEi~iL~gl~~~~-~~~G~ 28 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFR-AKTGK 28 (98)
T ss_pred CCCchHHHHHHHHHHHHH-HhcCC
Confidence 499999999999998875 55554
No 284
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=29.15 E-value=43 Score=15.14 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=10.4
Q ss_pred ccCChHHHHHHHHH
Q 037161 4 HAWSDEHCLKLLKN 17 (99)
Q Consensus 4 Hdw~d~~~~~iL~~ 17 (99)
|+|++++..+=|.+
T Consensus 14 h~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 14 HGLSEEEVAERLAA 27 (28)
T ss_pred cCCCHHHHHHHHHc
Confidence 78888887766654
No 285
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=29.12 E-value=43 Score=15.32 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=9.2
Q ss_pred HHHHHHHHHc---CCCee
Q 037161 69 HEFINLATAA---GFSGI 83 (99)
Q Consensus 69 ~e~~~ll~~a---Gf~~~ 83 (99)
+||..|+.+| |++..
T Consensus 3 ~EW~~Li~eA~~~Gls~e 20 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKE 20 (30)
T ss_dssp HHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 5888888765 65543
No 286
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=29.02 E-value=76 Score=20.29 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCeeEEEEcC
Q 037161 71 FINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 71 ~~~ll~~aGf~~~~~~~~~ 89 (99)
..++.+.+||...+..++.
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 3466677898888887764
No 287
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.93 E-value=59 Score=16.38 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCCe
Q 037161 68 KHEFINLATAAGFSG 82 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~ 82 (99)
.+...+.|+++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 778999999999975
No 288
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.91 E-value=1.3e+02 Score=20.47 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.1
Q ss_pred CceecCHHHHHHHHHHcCCCeeEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
+|..+|.+++.+++++.|..-+-+
T Consensus 202 sGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 202 LGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred eCCCCCHHHHHHHHHHCCCCEEEE
Confidence 799999999999998888665543
No 289
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=28.50 E-value=1.3e+02 Score=18.20 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHcCCCeeE
Q 037161 67 TKHEFINLATAAGFSGIR 84 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~ 84 (99)
...++.+.|++.||....
T Consensus 67 ~l~~~~~~L~~~Gf~~~~ 84 (144)
T PF08676_consen 67 LLEENKEELEKLGFEIEE 84 (144)
T ss_dssp HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhCCeEEEE
Confidence 356889999999998875
No 290
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=28.35 E-value=71 Score=16.89 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=10.4
Q ss_pred cCHHHHHHHHHHcCCCe
Q 037161 66 RTKHEFINLATAAGFSG 82 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~ 82 (99)
.+.+++.++.+++||..
T Consensus 25 ~~~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF 41 (64)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 44666666666666654
No 291
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=28.17 E-value=64 Score=17.06 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=9.4
Q ss_pred HHhccCCCceEEEEe
Q 037161 19 YESINKEDGKLIVVE 33 (99)
Q Consensus 19 ~~al~~pgg~l~I~e 33 (99)
.+-+ ..||+|+|.+
T Consensus 57 ~~~v-~~G~~lvl~a 70 (70)
T PF14258_consen 57 LEWV-EAGNTLVLAA 70 (70)
T ss_pred HHHH-HcCCEEEEeC
Confidence 3445 6788888863
No 292
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=27.96 E-value=59 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.2
Q ss_pred cCCCceecCHHHHHHHHHHcCCCeeE
Q 037161 59 HSPRGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 59 ~~~~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
.+++|.+++..+|.+++++.|.+..-
T Consensus 157 hSD~Gsqy~s~~~~~~l~~~gI~~Sm 182 (262)
T PRK14702 157 LTDNGSCYRANETRQFARMLGLEPKN 182 (262)
T ss_pred EcCCCcccchHHHHHHHHHcCCeecc
Confidence 46799999999999999999976543
No 293
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=27.96 E-value=1.3e+02 Score=17.54 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 6 WSDEHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
.++++..++++++.+.+..-||.+.-++..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~ 43 (108)
T PRK00453 14 LSEEQVKALVERFKGVITENGGTIHKVEDW 43 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 478999999999999984557877777753
No 294
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=27.82 E-value=40 Score=22.09 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCCceEEEE
Q 037161 12 LKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~ 32 (99)
...|+.+++.| +|||.|.+.
T Consensus 113 ~~fl~~~~~~L-~~gG~l~~~ 132 (195)
T PF02390_consen 113 PEFLELLARVL-KPGGELYFA 132 (195)
T ss_dssp HHHHHHHHHHE-EEEEEEEEE
T ss_pred chHHHHHHHHc-CCCCEEEEE
Confidence 46888999999 999988664
No 295
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=27.76 E-value=1.5e+02 Score=21.80 Aligned_cols=31 Identities=10% Similarity=0.004 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCC----eeEEEEcCCCeeEEEEEC
Q 037161 69 HEFINLATAAGFS----GIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 69 ~e~~~ll~~aGf~----~~~~~~~~~~~~vie~~k 99 (99)
.-+..+++++|+. ..++.+++...++||.+|
T Consensus 120 ~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 154 (366)
T cd05175 120 RIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVR 154 (366)
T ss_pred HHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcC
Confidence 3467888889963 455667788899999875
No 296
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=27.70 E-value=66 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHhccCCCceEEEEeeecCCCC
Q 037161 6 WSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELP 40 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~ 40 (99)
|+++-..+| ++....| ++|.+|+-...+.+...
T Consensus 133 F~~~l~~~L-~~~~~~l-k~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 133 FDPDLNLAL-AELLLEL-KPGARIISTKPFCPRRR 165 (205)
T ss_dssp T-HHHHHHH-HHHHTTS--TT-EEEESS-SS-TT-
T ss_pred cCHHHHHHH-HHHHhcC-CCCCEEEECCCcCCCCc
Confidence 455555555 6777889 99999988777766553
No 297
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=27.67 E-value=1.4e+02 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
+|+.+..|.+.+.+.. .++++|+++-.
T Consensus 8 s~~T~~~l~~~l~~~~-~~~~~iaclst 34 (162)
T PF10237_consen 8 SDETAEFLARELLDGA-LDDTRIACLST 34 (162)
T ss_pred CHHHHHHHHHHHHHhc-CCCCEEEEEeC
Confidence 6677777777777766 67778877653
No 298
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=27.59 E-value=74 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.1
Q ss_pred ccC-ChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 4 HAW-SDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 4 Hdw-~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
.|| +|.+.-.++.++.+.+ .||.+++.-
T Consensus 337 qdwmtd~qln~lws~isrta-~~gA~VifR 365 (414)
T COG5379 337 QDWMTDGQLNSLWSEISRTA-EAGARVIFR 365 (414)
T ss_pred hhhcccchHHHHHHHHhhcc-CCCcEEEEe
Confidence 467 8889999999999999 999888763
No 299
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=42 Score=23.00 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhccCCCceEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I 31 (99)
+.++.++.-.-| +|||+++|
T Consensus 172 a~~~pq~l~dqL-~~gGrlli 191 (237)
T KOG1661|consen 172 ASELPQELLDQL-KPGGRLLI 191 (237)
T ss_pred ccccHHHHHHhh-ccCCeEEE
Confidence 556778888889 99999998
No 300
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=27.45 E-value=1.4e+02 Score=21.78 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCC----eeEEEEcCCCeeEEEEEC
Q 037161 69 HEFINLATAAGFS----GIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 69 ~e~~~ll~~aGf~----~~~~~~~~~~~~vie~~k 99 (99)
..+.+++.+.|+. ..++.+++...++||++|
T Consensus 113 ~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ 147 (354)
T cd00895 113 RIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIP 147 (354)
T ss_pred HHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 4567888888843 355566778899999986
No 301
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=27.42 E-value=1.2e+02 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEeee
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
+.+....+++.+++.+ +|.++++.++..
T Consensus 126 ~~~~~~~lv~~Lr~~~-~~~~kllt~~~~ 153 (255)
T cd06542 126 SNEAFVRLIKELRKYM-GPTDKLLTIDGY 153 (255)
T ss_pred hHHHHHHHHHHHHHHh-CcCCcEEEEEec
Confidence 3456889999999999 887899988864
No 302
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=27.39 E-value=68 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=19.6
Q ss_pred ccCCh---HHHHHHHHHHHHhccCCCceEEEEe
Q 037161 4 HAWSD---EHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 4 Hdw~d---~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.||.. .....+.+++.+.+ .||+.|+.+|
T Consensus 163 ~Dw~~~~~~~~~~~~~~v~~~~-~~g~IiLlHd 194 (224)
T TIGR02884 163 KDWKVDEQPGWQYAYKQIMKKI-HPGAILLLHA 194 (224)
T ss_pred cccCCCCCCCHHHHHHHHHhcC-CCCcEEEEEC
Confidence 46742 23456777777777 8888888877
No 303
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=27.35 E-value=35 Score=24.89 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcC--CCceecCHHHHHHHHHHcCCCeeEEE
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHS--PRGKVRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~--~~g~~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
-...++++++++ +|||..++.|.+.-..-.++.. ...|+..-... .-..++.....-.++...||......
T Consensus 194 ~~~~y~Ei~rv~-kpGG~~i~~e~i~~~~~~~~~~----~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (364)
T KOG1269|consen 194 LEKVYAEIYRVL-KPGGLFIVKEWIKTAKLKKPNS----EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLE 266 (364)
T ss_pred HHHHHHHHhccc-CCCceEEeHHHHHhhhccCCCc----ccccccCceeccccccceeccccHHHHHhhccchhhhhc
Confidence 467899999999 9999999999875443222110 11121111100 01145555667777788887777643
No 304
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=27.02 E-value=1.3e+02 Score=19.92 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeec
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVL 36 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~ 36 (99)
.++.+-|+++.+.|+++|=+|.|.|..-
T Consensus 44 ~~aA~aL~~a~~~l~~~G~~L~I~D~yR 71 (184)
T PRK10178 44 KDAEAALRKAVSIAQLAGLTLRIYDAYR 71 (184)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4567778888888746677999999653
No 305
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=26.82 E-value=1.1e+02 Score=22.58 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.7
Q ss_pred CCceEEEEeeecCCC
Q 037161 25 EDGKLIVVEAVLPEL 39 (99)
Q Consensus 25 pgg~l~I~e~~~~~~ 39 (99)
|||+++|++.+++.-
T Consensus 255 PgGKvfVFtgiLn~c 269 (424)
T KOG2661|consen 255 PGGKVFVFTGILNSC 269 (424)
T ss_pred cCCeEEEEechhhcc
Confidence 899999999888754
No 306
>smart00463 SMR Small MutS-related domain.
Probab=26.82 E-value=1e+02 Score=16.67 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred cccCChHHHHHHHHHHHHhc
Q 037161 3 LHAWSDEHCLKLLKNCYESI 22 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al 22 (99)
||..+-++|...|....+.+
T Consensus 6 LHG~~~~eA~~~l~~~l~~~ 25 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNA 25 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999888776
No 307
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=26.70 E-value=75 Score=22.27 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
.+.++-+..++.| +|||+++=+ + ..+... ..-.|+ .....+.|+++||.+++.....
T Consensus 223 YseefY~El~RiL-krgGrlFHY--v-G~Pg~r------yrG~d~-------------~~gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 223 YSEEFYRELYRIL-KRGGRLFHY--V-GNPGKR------YRGLDL-------------PKGVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred hHHHHHHHHHHHc-CcCCcEEEE--e-CCCCcc------cccCCh-------------hHHHHHHHHhcCceeeeeehhc
Confidence 4678889999999 999998742 2 222111 112232 3466788999999988776543
No 308
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=26.36 E-value=71 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=20.6
Q ss_pred CceecCHHHHHHHHHHcCCCeeEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
++......||.++|++||++-+-.
T Consensus 50 tae~wDP~eWar~fK~aGAKyvil 73 (430)
T COG3669 50 TAENWDPREWARLFKEAGAKYVIL 73 (430)
T ss_pred CcccCCHHHHHHHHHHcCCcEEEE
Confidence 678889999999999999987643
No 309
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=26.28 E-value=1.7e+02 Score=20.75 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHcCC----CeeEEEEcCCCeeEEEEEC
Q 037161 70 EFINLATAAGF----SGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 70 e~~~ll~~aGf----~~~~~~~~~~~~~vie~~k 99 (99)
-+..++++.|. ...++.|++...++||.++
T Consensus 55 ~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ 88 (293)
T cd05168 55 QFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIP 88 (293)
T ss_pred HHHHHHHHCCCCceeeeEEEEEccCCceeEEEeC
Confidence 45666776663 3455667778899999875
No 310
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.20 E-value=70 Score=16.56 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHcCCCe
Q 037161 67 TKHEFINLATAAGFSG 82 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~ 82 (99)
..+...+.|+++||++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3568899999999964
No 311
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.16 E-value=1.1e+02 Score=15.81 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=23.1
Q ss_pred ccccCChHHHHHHHHHHHHhcc-----CCCceEEEEeee
Q 037161 2 ILHAWSDEHCLKLLKNCYESIN-----KEDGKLIVVEAV 35 (99)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~-----~pgg~l~I~e~~ 35 (99)
++...++++-.+|.+.+.+++. ++...-++++.+
T Consensus 8 ~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev 46 (60)
T PRK02289 8 LFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDM 46 (60)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEe
Confidence 3457799999999999988772 244444445544
No 312
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=25.94 E-value=72 Score=23.56 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
-+..|+++++.. ..||+++|=-+-+.
T Consensus 218 ERdFLk~VhecV-a~GGkvlIPvFALG 243 (501)
T KOG1136|consen 218 ERDFLKKVHECV-ARGGKVLIPVFALG 243 (501)
T ss_pred HHHHHHHHHHHH-hcCCeEEEEeeecc
Confidence 468999999999 99999999665544
No 313
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=25.88 E-value=90 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=12.8
Q ss_pred CCCceEEEEeeecCCCC
Q 037161 24 KEDGKLIVVEAVLPELP 40 (99)
Q Consensus 24 ~pgg~l~I~e~~~~~~~ 40 (99)
.+|-+++|+|-++....
T Consensus 105 ~~g~~VlIVDDvitTG~ 121 (176)
T PRK13812 105 DEGEEVVVLEDIATTGQ 121 (176)
T ss_pred CCcCEEEEEEEeeCCCH
Confidence 57778888888877654
No 314
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=25.81 E-value=1.4e+02 Score=21.66 Aligned_cols=30 Identities=7% Similarity=-0.085 Sum_probs=22.2
Q ss_pred HHHHHHHHcCC----CeeEEEEcCCCeeEEEEEC
Q 037161 70 EFINLATAAGF----SGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 70 e~~~ll~~aGf----~~~~~~~~~~~~~vie~~k 99 (99)
-+..++.+.|+ ...++.+++...++||+++
T Consensus 113 l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ 146 (352)
T cd00891 113 LMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVP 146 (352)
T ss_pred HHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeC
Confidence 45677788884 3456677888899999875
No 315
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=25.80 E-value=46 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHcCCCee
Q 037161 67 TKHEFINLATAAGFSGI 83 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~ 83 (99)
+..++-+.++.+|++++
T Consensus 110 rwd~l~~F~~~tG~~li 126 (319)
T PF03662_consen 110 RWDELNNFAQKTGLKLI 126 (319)
T ss_dssp --HHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHHHhCCEEE
Confidence 45666777889997765
No 316
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.72 E-value=87 Score=14.68 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=14.4
Q ss_pred cCHHHHHHHHHHcCCCee
Q 037161 66 RTKHEFINLATAAGFSGI 83 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~ 83 (99)
.|.++.++||+..|...-
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 577899999999996543
No 317
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=25.27 E-value=3e+02 Score=21.40 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHc
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAA 78 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~a 78 (99)
+++.++|+-+++.= ..-|.-.++|......... ...+...-+..++-|+.++..+|..++.+.
T Consensus 414 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 476 (607)
T PRK11057 414 EDAQKALSCIYRVN-QRFGMGYVVEVLRGANNQR------IRDYGHDKLKVYGIGRDKSHEHWVSVIRQL 476 (607)
T ss_pred HHHHHHHHHHHHhc-CCCCcceeeeeeeccCcch------hhhcccccCCccCcCCcCCHHHHHHHHHHH
Confidence 35678888777653 4556777788776643221 111222223334469999999999988743
No 318
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=25.27 E-value=1.1e+02 Score=21.03 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.+-...+|.+++++| ++++.|.|.+
T Consensus 190 ~~p~~~ml~~l~~vL-p~~sVV~v~~ 214 (246)
T PF11599_consen 190 GGPVAQMLNSLAPVL-PERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHHHCCS--TT-EEEEEE
T ss_pred CCcHHHHHHHHHhhC-CCCcEEEEec
Confidence 355789999999999 8888777744
No 319
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.23 E-value=1.2e+02 Score=16.15 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCC
Q 037161 68 KHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
......|+++.|+++..+...++
T Consensus 39 ~~ni~~~~~~~g~~v~~~~~~~~ 61 (69)
T cd03422 39 INNIPIDARNHGYKVLAIEQSGP 61 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 33566777888888877665543
No 320
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.20 E-value=1.2e+02 Score=16.11 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCCCe
Q 037161 68 KHEFINLATAAGFSGIRFQCFVCNS 92 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~~~~~ 92 (99)
.+....|.++.|++++....-++.+
T Consensus 39 ~~di~~~~~~~g~~~~~~~~~~~~~ 63 (69)
T cd03423 39 TRDIPKFCTFLGHELLAQETEDEPY 63 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEcCCEE
Confidence 3456677778888888776643333
No 321
>PHA03411 putative methyltransferase; Provisional
Probab=25.03 E-value=61 Score=22.85 Aligned_cols=17 Identities=6% Similarity=0.335 Sum_probs=14.5
Q ss_pred cCHHHHHHHHHHcCCCe
Q 037161 66 RTKHEFINLATAAGFSG 82 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~ 82 (99)
-+.+||+++++++||..
T Consensus 193 l~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 193 MKSNKYLKWSKQTGLVT 209 (279)
T ss_pred CCHHHHHHHHHhcCcEe
Confidence 35789999999999974
No 322
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.00 E-value=72 Score=16.54 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCCee
Q 037161 68 KHEFINLATAAGFSGI 83 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~ 83 (99)
.+...+.|+++||++.
T Consensus 50 ~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 50 PDKAKEALKEAGFAVK 65 (66)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 5688899999999863
No 323
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.93 E-value=1.2e+02 Score=18.81 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHhccCCCce
Q 037161 7 SDEHCLKLLKNCYESINKEDGK 28 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~ 28 (99)
+.+.++.+|+++..++ ||..
T Consensus 55 ~~~~a~e~l~~il~~l--P~t~ 74 (141)
T COG4446 55 DPGVAIEQLERILLSL--PGTV 74 (141)
T ss_pred CHHHHHHHHHHHHhhC--CCce
Confidence 4577999999999998 5543
No 324
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=24.88 E-value=29 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccCCCceEEEEeeec
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEAVL 36 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~~~ 36 (99)
....|+.++.-| .|||.|++-|...
T Consensus 191 T~~aLe~lyprl-~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 191 TKDALEFLYPRL-SPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHGGGE-EEEEEEEESSTTT
T ss_pred HHHHHHHHHhhc-CCCeEEEEeCCCC
Confidence 567899999999 9999888766544
No 325
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=24.85 E-value=71 Score=20.72 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHhccCCCce
Q 037161 8 DEHCLKLLKNCYESINKEDGK 28 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~ 28 (99)
.+...++++++.+++ .|+|.
T Consensus 223 ~~~~~~~~~~iK~~~-DP~~i 242 (248)
T PF02913_consen 223 GPAALRLMRAIKQAF-DPNGI 242 (248)
T ss_dssp HHHHHHHHHHHHHHH--TTS-
T ss_pred chHHHHHHHHhhhcc-CCccC
Confidence 455788999999999 88764
No 326
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=24.83 E-value=1.1e+02 Score=22.53 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=19.7
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
+-.+.|..+++++++.....++++..
T Consensus 267 gE~~~~~~~~~~li~~~a~Divq~d~ 292 (394)
T PRK15440 267 GEHEATLQGFRTLLEMGCIDIIQPDV 292 (394)
T ss_pred CCCccCHHHHHHHHHcCCCCEEeCCc
Confidence 44577899999999987777776543
No 327
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=24.80 E-value=1.5e+02 Score=20.33 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=8.7
Q ss_pred CCceEEEEeeecCC
Q 037161 25 EDGKLIVVEAVLPE 38 (99)
Q Consensus 25 pgg~l~I~e~~~~~ 38 (99)
|||..+|+|...+.
T Consensus 92 P~GvaiiVe~lTDN 105 (238)
T TIGR01033 92 PGGVAIIVECLTDN 105 (238)
T ss_pred CCceEEEEEEecCC
Confidence 66666666665543
No 328
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=24.78 E-value=1.2e+02 Score=17.93 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=17.1
Q ss_pred HHHHHHHHhccCCCceEEEEee
Q 037161 13 KLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 13 ~iL~~~~~al~~pgg~l~I~e~ 34 (99)
..++++.+.| +||...++...
T Consensus 43 ~~~~ev~~~L-~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEAL-KPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhc-CCCceEEEEEe
Confidence 4799999999 99987777653
No 329
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.74 E-value=76 Score=16.11 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=31.8
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCC
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
+...+.|.+-+++....+ ||=. +..++-.... . .+. . ....-+.++..+.++++||+
T Consensus 6 ~m~C~~C~~~v~~~l~~~--~GV~----~v~vd~~~~~-----v--~v~------~-~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKL--PGVK----SVKVDLETKT-----V--TVT------Y-DPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp STTSHHHHHHHHHHHHTS--TTEE----EEEEETTTTE-----E--EEE------E-STTTSCHHHHHHHHHHTTSE
T ss_pred CcccHHHHHHHHHHHhcC--CCCc----EEEEECCCCE-----E--EEE------E-ecCCCCHHHHHHHHHHhCcC
Confidence 456677888888888877 4421 2122211110 0 011 1 22225678999999999984
No 330
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=24.68 E-value=2e+02 Score=18.87 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=18.2
Q ss_pred CceecCHHHHHHHHHHcCCCeeEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
+|..+|.++.+++++ +|..-+-+
T Consensus 195 ~GGi~~~~di~~~~~-~Gadgv~i 217 (230)
T TIGR00007 195 SGGVSSIDDLIALKK-LGVYGVIV 217 (230)
T ss_pred eCCCCCHHHHHHHHH-CCCCEEEE
Confidence 789999999999875 78665543
No 331
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=24.66 E-value=1.3e+02 Score=21.70 Aligned_cols=28 Identities=7% Similarity=-0.115 Sum_probs=20.6
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
+=|.-+.++|+++|+.|+-+++......
T Consensus 29 ~LR~i~~~~w~~~L~~a~C~Ils~~sn~ 56 (331)
T PF01536_consen 29 GLRSIPREFWDEMLDLAGCEILSEISNE 56 (331)
T ss_dssp -GGGS-HHHHHHHHHHCT-EEEEEEE-S
T ss_pred ccccCCHHHHHHHHHhcCCEEEEEEccC
Confidence 3456778999999999999999887754
No 332
>PF15636 Tox-GHH: GHH signature containing HNH/Endo VII superfamily nuclease toxin
Probab=24.48 E-value=57 Score=18.39 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.1
Q ss_pred ccCChHHHHHHHHH
Q 037161 4 HAWSDEHCLKLLKN 17 (99)
Q Consensus 4 Hdw~d~~~~~iL~~ 17 (99)
.+|++++-..||++
T Consensus 35 r~Wt~~Ek~ell~~ 48 (79)
T PF15636_consen 35 RNWTEEEKQELLST 48 (79)
T ss_pred CccCHHHHHHHHHc
Confidence 58999999999876
No 333
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=24.45 E-value=1.1e+02 Score=19.59 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=20.5
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEcC
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
.|+. .|.+.+|++.|+++.+..++.
T Consensus 116 eGr~---~qIRrm~~~~G~~V~~L~Ri~ 140 (164)
T cd02554 116 QGLN---RQIRRMCEALGYRVTDLKRVR 140 (164)
T ss_pred CCcC---HHHHHHHHHcCCEEEEEEEEE
Confidence 5554 389999999999999998763
No 334
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.38 E-value=1.3e+02 Score=19.92 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecCC
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLPE 38 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~~ 38 (99)
+.-.++.+++.+.| ||+ .++|--...|-
T Consensus 76 ~NL~~Lf~rLk~~l-p~~-allIW~tt~Pv 103 (183)
T cd01842 76 ENLERLFSKLDSVL-PIE-CLIVWNTAMPV 103 (183)
T ss_pred HHHHHHHHHHHhhC-CCc-cEEEEecCCCC
Confidence 34566777777778 776 55665555553
No 335
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=24.34 E-value=1.6e+02 Score=20.41 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=27.5
Q ss_pred CCceecCHHHHHHHHHHcCCCeeEEEEcCCCeeE
Q 037161 61 PRGKVRTKHEFINLATAAGFSGIRFQCFVCNSWV 94 (99)
Q Consensus 61 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~v 94 (99)
+.|++-+..|...++...|+...+..-+.++..+
T Consensus 99 ~~gk~f~p~EI~~LL~~~~~~~~~~~~i~~g~~v 132 (246)
T PRK11611 99 PTGKEFMPREISLLLGEEGNPLSSQEVLEGGESL 132 (246)
T ss_pred CCCcccCHHHHHHHHhccCCCcceeEEeCCCCEE
Confidence 4699999999999999999988776666555444
No 336
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=23.92 E-value=2.1e+02 Score=20.22 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=22.2
Q ss_pred HHHHHHHHcCC----CeeEEEEcCCCeeEEEEEC
Q 037161 70 EFINLATAAGF----SGIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 70 e~~~ll~~aGf----~~~~~~~~~~~~~vie~~k 99 (99)
.+..++++.|. ...++.+++...++||.+|
T Consensus 55 l~~~i~~~~~l~l~l~~Y~vi~~s~~~GlIE~V~ 88 (289)
T cd00893 55 ELQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIP 88 (289)
T ss_pred HHHHHHHHcCCCceeEEEEEEECCCCceeEEEeC
Confidence 45677787774 3456667778899999875
No 337
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.86 E-value=97 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=18.5
Q ss_pred ecCHHHHHHHHHHcCCCeeEEE
Q 037161 65 VRTKHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 65 ~rt~~e~~~ll~~aGf~~~~~~ 86 (99)
..+.+|+.+++++|||+.++--
T Consensus 282 ~~~~~~l~~~~~~~g~~~~~r~ 303 (309)
T TIGR00423 282 GLTVEELIEAIKDAGRVPAQRD 303 (309)
T ss_pred CCCHHHHHHHHHHcCCCeeecC
Confidence 4578999999999999987643
No 338
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=23.78 E-value=91 Score=16.07 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=10.2
Q ss_pred cCHHHHHHHHHHcCCC
Q 037161 66 RTKHEFINLATAAGFS 81 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~ 81 (99)
.|.++..+||+..||.
T Consensus 4 w~~~~v~~WL~~~gl~ 19 (66)
T PF07647_consen 4 WSPEDVAEWLKSLGLE 19 (66)
T ss_dssp HCHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHCCcH
Confidence 4566666677766663
No 339
>PF12912 N_NLPC_P60: NLPC_P60 stabilising domain, N term; PDB: 3M1U_B.
Probab=23.73 E-value=72 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=16.1
Q ss_pred CCCceecCHHHHHHHHHHcCCC
Q 037161 60 SPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 60 ~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
..|.+.++.+.|++|.+.|+|.
T Consensus 101 geN~~p~~~~~~~~l~~nan~~ 122 (124)
T PF12912_consen 101 GENLRPIDPEWFDALIANANFE 122 (124)
T ss_dssp -TTSSB--HHHHHHHHHHC-GG
T ss_pred CcCCCCCCHHHHHHHHHhcCcc
Confidence 3588999999999999999875
No 340
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=23.73 E-value=56 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.7
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
-|-......+.++|++.||+++.+..
T Consensus 64 iGL~~EA~~~~~iL~~~gFev~sV~C 89 (157)
T PF08901_consen 64 IGLRKEARILAKILEANGFEVYSVCC 89 (157)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 45566678899999999999999874
No 341
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.66 E-value=1.7e+02 Score=20.35 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.2
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+....+..++++++++.+...+++.+.
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 667889999999999888888777644
No 342
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=23.53 E-value=1.3e+02 Score=20.43 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=24.2
Q ss_pred ccccCChHHHH-HHHHHHHHhccCCCceEEEEeeecCC
Q 037161 2 ILHAWSDEHCL-KLLKNCYESINKEDGKLIVVEAVLPE 38 (99)
Q Consensus 2 vlHdw~d~~~~-~iL~~~~~al~~pgg~l~I~e~~~~~ 38 (99)
++-|...++.. ++|+-+. + .|.|.++|.......
T Consensus 119 ~vVDc~~~d~~~~vl~~~~--~-~~~GaVVV~~Na~~r 153 (218)
T PF07279_consen 119 VVVDCKREDFAARVLRAAK--L-SPRGAVVVCYNAFSR 153 (218)
T ss_pred EEEeCCchhHHHHHHHHhc--c-CCCceEEEEeccccC
Confidence 35577777777 8888644 5 677888888876553
No 343
>PF00540 Gag_p17: gag gene protein p17 (matrix protein); InterPro: IPR000071 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from immunodeficiency lentiviruses, such as Human immunodeficiency virus (HIV) and Simian immunodeficiency virus (SIV-cpz) []. The structure of the HIV protein consists of 5 alpha helices, a short 3.10 helix and a 3-stranded mixed beta-sheet [].; GO: 0005198 structural molecule activity; PDB: 2JMG_A 1L6N_A 2NV3_A 1ED1_A 1ECW_A 2C7U_C 2H3F_A 1HIW_S 2H3V_A 2H3I_A ....
Probab=23.53 E-value=82 Score=19.91 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHhccCCCc
Q 037161 6 WSDEHCLKLLKNCYESINKEDG 27 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg 27 (99)
++-+-|.+||..+..++ +.|+
T Consensus 51 eT~EGC~qIl~qL~P~l-~TGS 71 (140)
T PF00540_consen 51 ETAEGCQQILEQLQPLL-PTGS 71 (140)
T ss_dssp CSHHHHHHHHHHHGGGC-TTSH
T ss_pred chhhhhhcceeccCCCC-cCCc
Confidence 45678999999999998 7664
No 344
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=76 Score=21.38 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=14.0
Q ss_pred HHHHHhccCCCceEEEEee
Q 037161 16 KNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 16 ~~~~~al~~pgg~l~I~e~ 34 (99)
+...+.| +|||+++|-..
T Consensus 153 ~~Ll~QL-~~gGrlv~PvG 170 (209)
T COG2518 153 EALLDQL-KPGGRLVIPVG 170 (209)
T ss_pred HHHHHhc-ccCCEEEEEEc
Confidence 4456778 99999999665
No 345
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=23.42 E-value=1.8e+02 Score=17.59 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCCCceEEEEeee
Q 037161 10 HCLKLLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~e~~ 35 (99)
.-.++++++++++ +--|.+..+|.-
T Consensus 35 ~~Lk~~~~~A~~v-kG~gT~~~vdCg 59 (112)
T cd03067 35 ALLKLLSDVAQAV-KGQGTIAWIDCG 59 (112)
T ss_pred HHHHHHHHHHHHh-cCceeEEEEecC
Confidence 3568899999999 878899998875
No 346
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=23.42 E-value=1.4e+02 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=22.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeeecCCC
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL 39 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~ 39 (99)
|-+.+.-...++.+.+-| +|||. +|+|.++-.+
T Consensus 163 DadK~~Y~~y~~~~l~ll-~~GGv-iv~DNvl~~G 195 (247)
T PLN02589 163 DADKDNYINYHKRLIDLV-KVGGV-IGYDNTLWNG 195 (247)
T ss_pred cCCHHHhHHHHHHHHHhc-CCCeE-EEEcCCCCCC
Confidence 444556677788888888 88775 5557665433
No 347
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=23.40 E-value=1.9e+02 Score=19.25 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCCceecCHHHHHHHHHHcCCCeeEEEEcCC
Q 037161 60 SPRGKVRTKHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 60 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
++|=+.-|..+|+++.++.|+++.+-..+.+
T Consensus 140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 140 TPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 5678889999999999999999999887754
No 348
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.40 E-value=1.1e+02 Score=16.30 Aligned_cols=18 Identities=6% Similarity=0.294 Sum_probs=16.2
Q ss_pred cCChHHHHHHHHHHHHhc
Q 037161 5 AWSDEHCLKLLKNCYESI 22 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al 22 (99)
.+++.++..|++++..-|
T Consensus 13 Gf~~~tA~~IIrqAK~~l 30 (59)
T PF11372_consen 13 GFSESTARDIIRQAKALL 30 (59)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 689999999999998877
No 349
>PRK05066 arginine repressor; Provisional
Probab=23.35 E-value=68 Score=20.49 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.7
Q ss_pred CceecCHHHHHHHHHHcCCC
Q 037161 62 RGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~ 81 (99)
+-...|-+|..+.|++.||.
T Consensus 20 ~~~I~tQeeL~~~L~~~Gi~ 39 (156)
T PRK05066 20 EEKFGSQGEIVTALQEQGFD 39 (156)
T ss_pred hCCCCCHHHHHHHHHHCCCC
Confidence 56788899999999999998
No 350
>PRK11018 hypothetical protein; Provisional
Probab=23.34 E-value=1.4e+02 Score=16.36 Aligned_cols=23 Identities=13% Similarity=-0.065 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCC
Q 037161 68 KHEFINLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~~~ 90 (99)
......|+++.|++++.....++
T Consensus 48 ~~di~~~~~~~G~~v~~~~~~~g 70 (78)
T PRK11018 48 INNIPLDARNHGYTVLDIQQDGP 70 (78)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 44667788889988887665443
No 351
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=23.22 E-value=1.7e+02 Score=17.16 Aligned_cols=31 Identities=16% Similarity=-0.091 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHcCCCeeEEEEcCC---CeeEEEE
Q 037161 67 TKHEFINLATAAGFSGIRFQCFVC---NSWVMEF 97 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~~~~~---~~~vie~ 97 (99)
=..|..+.|+++|.+..+|...+. .+.++|+
T Consensus 24 vWPEv~~~l~~~Gi~~ysIf~~g~~~~LF~~~E~ 57 (106)
T PF05336_consen 24 VWPEVLAALREAGIRNYSIFRDGDTGRLFMYMET 57 (106)
T ss_dssp --HHHHHHHHHCTEEEEEEEEETTTTEEEEEEEE
T ss_pred cCHHHHHHHHHCCCeEEEEEEeCCCCEEEEEEEe
Confidence 367899999999999999998764 3566665
No 352
>PRK05473 hypothetical protein; Provisional
Probab=23.10 E-value=78 Score=18.28 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHhccCCCc
Q 037161 7 SDEHCLKLLKNCYESINKEDG 27 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg 27 (99)
...++..+|+.+++|| ...|
T Consensus 16 ~~~~v~eiL~~Vy~AL-~EKG 35 (86)
T PRK05473 16 KKKDVREILTTVYDAL-EEKG 35 (86)
T ss_pred cHHHHHHHHHHHHHHH-HHcC
Confidence 3456899999999999 5433
No 353
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=23.08 E-value=98 Score=18.32 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=21.2
Q ss_pred CCCceecCHHHHHHHHHHcCCCeeEE
Q 037161 60 SPRGKVRTKHEFINLATAAGFSGIRF 85 (99)
Q Consensus 60 ~~~g~~rt~~e~~~ll~~aGf~~~~~ 85 (99)
.+.+..-|.+....+++.+|.++...
T Consensus 12 ~d~~~~~Tae~I~~ilkAaGveve~~ 37 (103)
T cd05831 12 HDDGIEITADNINALLKAAGVNVEPY 37 (103)
T ss_pred ccCCCCCCHHHHHHHHHHcCCcccHH
Confidence 35889999999999999999666543
No 354
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=23.08 E-value=1.4e+02 Score=18.81 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=20.0
Q ss_pred cccCChHHHHHHHHHHHHhccCC-CceEEEEeee
Q 037161 3 LHAWSDEHCLKLLKNCYESINKE-DGKLIVVEAV 35 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~p-gg~l~I~e~~ 35 (99)
||+.||.=..+|-+++.++= +. .+.|++.-.+
T Consensus 7 LH~~p~~L~~~lq~~id~~~-~~~d~Ill~YG~C 39 (166)
T PF07796_consen 7 LHNDPDKLRKELQEEIDKAS-KDYDGILLFYGLC 39 (166)
T ss_pred hcCCHHHHHHHHHHHHHHhh-ccCCeEEEEEeCC
Confidence 79998877777777766653 23 3444444443
No 355
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=23.03 E-value=1.7e+02 Score=18.17 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=16.0
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
|.||+++.+.-+=++.+++ +++.-++++
T Consensus 103 ~~~P~~~~iD~fi~~v~~~-p~~~~l~fh 130 (149)
T PF14566_consen 103 HQAPDPEDIDAFINFVKSL-PKDTWLHFH 130 (149)
T ss_dssp TS---HHHHHHHHHHHHTS--TT-EEEEE
T ss_pred cCCCCHHHHHHHHHHHHhC-CCCCeEEEE
Confidence 6788888777777777777 776555443
No 356
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=22.98 E-value=46 Score=22.87 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHhccCCCceEEEEeeecC
Q 037161 13 KLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 13 ~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
..+.++.++|++|||++.++=+.++
T Consensus 126 ~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 126 EAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp GGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred HHHHHHHHHHhcCCceEEEECCCHH
Confidence 4577888888558898888765543
No 357
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=22.91 E-value=1e+02 Score=18.53 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.6
Q ss_pred CceecCHHHHHHHHHHcCCCeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
+|++-|.+....+|+.+|-++..
T Consensus 13 ~g~~it~e~I~~IL~AAGveVee 35 (106)
T PRK06402 13 AGKEINEDNLKKVLEAAGVEVDE 35 (106)
T ss_pred cCCCCCHHHHHHHHHHcCCCccH
Confidence 78899999999999999965543
No 358
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=22.90 E-value=1.7e+02 Score=19.94 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=22.9
Q ss_pred CceecCHHHH-HHHHHHcCCCeeEEEEcCC
Q 037161 62 RGKVRTKHEF-INLATAAGFSGIRFQCFVC 90 (99)
Q Consensus 62 ~g~~rt~~e~-~~ll~~aGf~~~~~~~~~~ 90 (99)
....-|-.|. +.+|+..|...+++.++++
T Consensus 33 ~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G 62 (222)
T PF04298_consen 33 SSSGMTGAEVARHILDRNGLSDVRVERVPG 62 (222)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCeeEEEeCC
Confidence 3445566777 7899999999999999864
No 359
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=22.89 E-value=1.9e+02 Score=21.09 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCC----eeEEEEcCCCeeEEEEEC
Q 037161 70 EFINLATAAGFS----GIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 70 e~~~ll~~aGf~----~~~~~~~~~~~~vie~~k 99 (99)
-+..++++.|+. ..++.+++...++||.++
T Consensus 113 lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ 146 (353)
T cd05166 113 IMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVP 146 (353)
T ss_pred HHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeC
Confidence 456677888854 356667778899999875
No 360
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=22.85 E-value=2.1e+02 Score=19.32 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=21.1
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEEc
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+...++..++.+++++-+...+.+.+.
T Consensus 186 dE~~~~~~~~~~~i~~~~~d~v~~k~~ 212 (265)
T cd03315 186 DESAFTPHDAFRELALGAADAVNIKTA 212 (265)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEecc
Confidence 667888999999998888777776543
No 361
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=22.54 E-value=1.3e+02 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEE
Q 037161 10 HCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 10 ~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
...+.++++.+.| +.|+.++|+
T Consensus 83 ~~~~~~~~~~~~L-~~G~~l~IF 104 (210)
T cd07986 83 KNRESLREALRHL-KNGGALIIF 104 (210)
T ss_pred hhHHHHHHHHHHH-hCCCEEEEE
Confidence 5678899999999 888777663
No 362
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=22.52 E-value=1.7e+02 Score=18.05 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=12.9
Q ss_pred hccCCCceEEEEeeecC
Q 037161 21 SINKEDGKLIVVEAVLP 37 (99)
Q Consensus 21 al~~pgg~l~I~e~~~~ 37 (99)
.| +||-|++|-..++.
T Consensus 4 ~L-kpgERi~INGAVi~ 19 (126)
T PF07378_consen 4 SL-KPGERIIINGAVIR 19 (126)
T ss_pred ee-cCCCEEEEcCeEEE
Confidence 36 88989998888776
No 363
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=22.52 E-value=1.2e+02 Score=18.45 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCCCeeEEEEc
Q 037161 67 TKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~~~ 88 (99)
...+..+.+.++||.++....+
T Consensus 16 ~~g~Ii~~l~~~Gf~I~~~k~~ 37 (135)
T PF00334_consen 16 HAGEIIDRLEEAGFEIVAMKMV 37 (135)
T ss_dssp -HHHHHHHHHHHT-EEEEEEEE
T ss_pred chHHHHHHHHHcCCeeeehhhh
Confidence 4678889999999999987654
No 364
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=22.51 E-value=2.2e+02 Score=20.79 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCC----eeEEEEcCCCeeEEEEEC
Q 037161 70 EFINLATAAGFS----GIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 70 e~~~ll~~aGf~----~~~~~~~~~~~~vie~~k 99 (99)
-+..++.++|+. ..++.+++...++||.+|
T Consensus 114 lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ 147 (354)
T cd05177 114 VMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVP 147 (354)
T ss_pred HHHHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 346677888853 455566777899999875
No 365
>PF15581 Imm35: Immunity protein 35
Probab=22.49 E-value=1.2e+02 Score=17.58 Aligned_cols=28 Identities=25% Similarity=0.537 Sum_probs=16.9
Q ss_pred ccC---ChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 4 HAW---SDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 4 Hdw---~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
|+| +.++..+=|+.++. ++|+++++|--
T Consensus 41 ~eWRGl~~~qV~~kl~ava~--~~~~~~~vvKk 71 (93)
T PF15581_consen 41 HEWRGLPEEQVLYKLEAVAA--KGPEAKIVVKK 71 (93)
T ss_pred HHHcCCCHHHHHHHHHHHHh--cCCCcceEEEe
Confidence 555 55555555555444 37888887754
No 366
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=22.46 E-value=1.1e+02 Score=18.17 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=19.2
Q ss_pred CceecCHHHHHHHHHHcCCCeeE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIR 84 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~ 84 (99)
+|.+-|.+....+|..+|-++..
T Consensus 13 ~g~~~ta~~I~~IL~aaGveVe~ 35 (105)
T cd04411 13 GGKELTEDKIKELLSAAGAEIEP 35 (105)
T ss_pred cCCCCCHHHHHHHHHHcCCCcCH
Confidence 78889999999999999965543
No 367
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=1.1e+02 Score=21.11 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCCeeEEEEcC
Q 037161 67 TKHEFINLATAAGFSGIRFQCFV 89 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~~~~ 89 (99)
+..++.++++++||.++....-+
T Consensus 171 ~~~~~~~~~~~~G~~v~~t~~~~ 193 (260)
T COG0566 171 LARTLLELLKEAGFWVVATSLDG 193 (260)
T ss_pred cHHHHHHHHHHcCeEEEEECCCC
Confidence 57899999999999998876543
No 368
>PTZ00445 p36-lilke protein; Provisional
Probab=22.35 E-value=1.7e+02 Score=19.96 Aligned_cols=19 Identities=0% Similarity=-0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCCeeEEE
Q 037161 68 KHEFINLATAAGFSGIRFQ 86 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~ 86 (99)
..+|-.-+.++|+.+.=+.
T Consensus 80 fk~~~~~l~~~~I~v~VVT 98 (219)
T PTZ00445 80 FKILGKRLKNSNIKISVVT 98 (219)
T ss_pred HHHHHHHHHHCCCeEEEEE
Confidence 6677777778998887654
No 369
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=22.33 E-value=1.9e+02 Score=17.51 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHhccC---C-CceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINK---E-DGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~---p-gg~l~I~e~ 34 (99)
+|++.-.++..+.+++ . + +|+++|.+-
T Consensus 66 ~de~ve~vie~I~~~a-~tG~~GDGkIFV~~V 96 (112)
T COG0347 66 SDEDVDEVIEAIKKAA-RTGKIGDGKIFVSPV 96 (112)
T ss_pred ChHHHHHHHHHHHHHH-hcCCCCCeEEEEEEh
Confidence 5778888888888777 4 3 589999763
No 370
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=22.30 E-value=71 Score=18.17 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhccCCCc
Q 037161 8 DEHCLKLLKNCYESINKEDG 27 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg 27 (99)
..+...+|+.+++|| ...|
T Consensus 14 ~~~~~~iL~~Vy~AL-~EKG 32 (79)
T PF06135_consen 14 EKEIREILKQVYAAL-EEKG 32 (79)
T ss_pred hhhHHHHHHHHHHHH-HHcC
Confidence 456899999999999 5433
No 371
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=22.24 E-value=1.4e+02 Score=15.85 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCCC
Q 037161 68 KHEFINLATAAGFSGIRFQCFVCN 91 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~~~~ 91 (99)
......|.+..|++.+.+...++.
T Consensus 39 ~~di~~~~~~~G~~~~~~~~~~~~ 62 (69)
T cd03420 39 ARDAQAWCKSTGNTLISLETEKGK 62 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCE
Confidence 345667778888888766654433
No 372
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=22.22 E-value=89 Score=13.55 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=14.1
Q ss_pred CceecCHHHHHHHHH-HcC
Q 037161 62 RGKVRTKHEFINLAT-AAG 79 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~-~aG 79 (99)
+...-+.+|+..+++ +.|
T Consensus 13 ~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 13 GDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp SSSEEEHHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHhcC
Confidence 556778899999998 565
No 373
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=22.22 E-value=77 Score=15.55 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=9.5
Q ss_pred ChHHHHHHHHHHH
Q 037161 7 SDEHCLKLLKNCY 19 (99)
Q Consensus 7 ~d~~~~~iL~~~~ 19 (99)
+|++|.+.|+.++
T Consensus 2 ~e~~c~~~l~~~R 14 (46)
T PF12760_consen 2 DEEACREYLEEIR 14 (46)
T ss_pred CHHHHHHHHHHhc
Confidence 5677888887765
No 374
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.19 E-value=87 Score=17.83 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.8
Q ss_pred cCChHHHHHHHHHHHHhccCCC
Q 037161 5 AWSDEHCLKLLKNCYESINKED 26 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pg 26 (99)
+|.|+.+.+.|=.+++.| .++
T Consensus 54 ~~~~~~ar~~ll~~f~~l-g~~ 74 (90)
T PF14561_consen 54 DYEDDAARKRLLDIFELL-GPG 74 (90)
T ss_dssp TCCCCHHHHHHHHHHHHH--TT
T ss_pred cccccHHHHHHHHHHHHc-CCC
Confidence 577777777777888877 554
No 375
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=22.17 E-value=1.1e+02 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=18.4
Q ss_pred cccCChHHHHHHHHHHHHhccCCCce
Q 037161 3 LHAWSDEHCLKLLKNCYESINKEDGK 28 (99)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~pgg~ 28 (99)
||+-.......|...+.+|| ..|..
T Consensus 14 LHHiEPKRVKvIVeEv~qal-tegkl 38 (149)
T PF03574_consen 14 LHHIEPKRVKVIVEEVRQAL-TEGKL 38 (149)
T ss_dssp HTT--HHHHHHHHHHHHHHH-SSS--
T ss_pred ccccCchhhhhHHHHHHHHH-hhhhH
Confidence 68888888999999999999 76543
No 376
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.10 E-value=1.4e+02 Score=21.33 Aligned_cols=77 Identities=6% Similarity=0.059 Sum_probs=43.2
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhhhh-hhhchHhhhcCCCceecCHHHHHHHHHHcCCCe
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPELPENSATSKAN-SQIDVFMLTHSPRGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~~~-~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 82 (99)
-+|+++++..+.+-+.+-|.+.||.++|--.--.++. ..+... .+-...+.+. +++.-..+=|-.+|..|..-+
T Consensus 175 f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~---~~s~l~~~l~s~~~i~w--~~~d~g~NPY~~~La~Adyii 249 (329)
T COG3660 175 FVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDT---VKSILKNNLNSSPGIVW--NNEDTGYNPYIDMLAAADYII 249 (329)
T ss_pred CccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHH---HHHHHHhccccCceeEe--CCCCCCCCchHHHHhhcceEE
Confidence 3788999998888888888447888888543211110 001011 1222223322 445444556788888887555
Q ss_pred eEE
Q 037161 83 IRF 85 (99)
Q Consensus 83 ~~~ 85 (99)
...
T Consensus 250 ~Ta 252 (329)
T COG3660 250 STA 252 (329)
T ss_pred Eec
Confidence 443
No 377
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.04 E-value=93 Score=19.01 Aligned_cols=26 Identities=4% Similarity=0.034 Sum_probs=17.4
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
+...-+.+....||++.|++...+..
T Consensus 58 ~p~~~~v~~V~~wL~~~G~~~~~~~~ 83 (143)
T PF09286_consen 58 APSPEDVAAVKSWLKSHGLTVVEVSA 83 (143)
T ss_dssp S--HHHHHHHHHHHHHCT-EEEEEET
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEeC
Confidence 34455577888999999998887443
No 378
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=21.96 E-value=1.8e+02 Score=19.47 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=20.8
Q ss_pred ccCChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 4 HAWSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
+++++++...+.+++.+.. ..|..+.|+=
T Consensus 183 ~~Ys~~eL~~~a~~i~~~~-~~~~~v~v~f 211 (230)
T PF01904_consen 183 YRYSDEELEEWAERIRAWA-AQGKEVYVFF 211 (230)
T ss_dssp ----HHHHHHHHHHHHHHH-TCSSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHH-HcCCCEEEEE
Confidence 5679999999999999988 7677777754
No 379
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=21.88 E-value=2.4e+02 Score=18.96 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=16.8
Q ss_pred HHHHHHHhccCCCceEEEEeee
Q 037161 14 LLKNCYESINKEDGKLIVVEAV 35 (99)
Q Consensus 14 iL~~~~~al~~pgg~l~I~e~~ 35 (99)
.++.+.+.+ +|+|+++++-..
T Consensus 200 ~~~~~~~~l-~~~G~iv~~G~~ 220 (280)
T TIGR03366 200 AVRACLESL-DVGGTAVLAGSV 220 (280)
T ss_pred HHHHHHHHh-cCCCEEEEeccC
Confidence 466777888 999999988754
No 380
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=21.87 E-value=1.7e+02 Score=18.23 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.3
Q ss_pred hccCCCceEEEEeeecCCC
Q 037161 21 SINKEDGKLIVVEAVLPEL 39 (99)
Q Consensus 21 al~~pgg~l~I~e~~~~~~ 39 (99)
.| +||-|++|-..++..+
T Consensus 7 ~L-Kp~ERi~INGAVirnd 24 (132)
T PRK00794 7 SL-KPGERIFINGAVLRND 24 (132)
T ss_pred Ee-cCCCEEEEcCeEEEeC
Confidence 46 8888888888776643
No 381
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=21.85 E-value=57 Score=22.18 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccCCCceEEEEe
Q 037161 11 CLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e 33 (99)
....++.+++.| +|+|.+++.-
T Consensus 170 t~ef~~~~~~~L-~~~Gv~v~~~ 191 (246)
T PF01564_consen 170 TREFYQLCKRRL-KPDGVLVLQA 191 (246)
T ss_dssp SHHHHHHHHHHE-EEEEEEEEEE
T ss_pred CHHHHHHHHhhc-CCCcEEEEEc
Confidence 468899999999 9999877755
No 382
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=21.83 E-value=1.6e+02 Score=19.21 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=22.9
Q ss_pred ccCChHHHHHHHHHHHHhccCC-CceEEEEeeec
Q 037161 4 HAWSDEHCLKLLKNCYESINKE-DGKLIVVEAVL 36 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~p-gg~l~I~e~~~ 36 (99)
..++.++...++.++.+.+... +-+++|+|.+-
T Consensus 92 ~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 92 RAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred ecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 3455566677778877776333 67899999864
No 383
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.71 E-value=1.2e+02 Score=18.45 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEee
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
+...+.-+.+.+++ ..||+|+++-.
T Consensus 19 ~~i~~aa~~i~~~~-~~gg~i~~~G~ 43 (138)
T PF13580_consen 19 EAIEKAADLIAEAL-RNGGRIFVCGN 43 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT--EEEEES
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEcC
Confidence 44556667778888 89999999874
No 384
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=21.69 E-value=1.6e+02 Score=20.08 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEEee
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
+++.+.++++-+-.++ + ||++.|+=.
T Consensus 130 ~~~~v~~fv~i~e~~~-~-~g~iaVHCk 155 (225)
T KOG1720|consen 130 TDAIVKEFVKIVENAE-K-GGKIAVHCK 155 (225)
T ss_pred CHHHHHHHHHHHHHHH-h-cCeEEEEec
Confidence 4667888888888888 7 999999753
No 385
>PF15603 Imm45: Immunity protein 45
Probab=21.64 E-value=1.7e+02 Score=16.62 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHhccCCCceEEEEe
Q 037161 6 WSDEHCLKLLKNCYESINKEDGKLIVVE 33 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~pgg~l~I~e 33 (99)
.++.+..+|++.+.+.+ ..+|..+.+|
T Consensus 56 it~~e~q~II~aI~~~~-~~~~~~v~fE 82 (82)
T PF15603_consen 56 ITIAERQKIIEAIEKYF-SERGMTVDFE 82 (82)
T ss_pred cCHHHHHHHHHHHHHHH-hcCceEEEeC
Confidence 35778899999999998 7777666554
No 386
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=21.30 E-value=1.5e+02 Score=18.06 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHcCCCeeEEEEc
Q 037161 67 TKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~~~~~~ 88 (99)
...+..+.++++||.++....+
T Consensus 16 ~~g~Il~~i~~~Gf~I~~~k~~ 37 (133)
T cd00595 16 LLGEIIMRIEDAGFEIVAMKEL 37 (133)
T ss_pred cHHHHHHHHHHcCCEEEEeeee
Confidence 4678899999999999988754
No 387
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.20 E-value=1.1e+02 Score=22.23 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=43.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCceEEEEeeecCCC-----CC-CchhhhhhhhhchHhhhcCCCceecCHHHHHHHH---
Q 037161 5 AWSDEHCLKLLKNCYESINKEDGKLIVVEAVLPEL-----PE-NSATSKANSQIDVFMLTHSPRGKVRTKHEFINLA--- 75 (99)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~pgg~l~I~e~~~~~~-----~~-~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll--- 75 (99)
-|+|++ +.-++++.+++.+-|++++|-=...... +. ++....-....+.. . ....++-|.+|.+++.
T Consensus 76 l~~d~~-i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~--~-~~~pr~mt~~eI~~ii~~f 151 (363)
T COG1902 76 LWSDAQ-IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGG--R-RATPRELTEEEIEEVIEDF 151 (363)
T ss_pred cCChhH-hHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccC--C-CCCCccCCHHHHHHHHHHH
Confidence 366666 9999999999955566666632221100 00 00000000011110 0 1135677777777654
Q ss_pred -------HHcCCCeeEEEEcC
Q 037161 76 -------TAAGFSGIRFQCFV 89 (99)
Q Consensus 76 -------~~aGf~~~~~~~~~ 89 (99)
.+|||..++++...
T Consensus 152 ~~AA~rA~~AGFDgVEIH~Ah 172 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAH 172 (363)
T ss_pred HHHHHHHHHcCCCEEEEeecc
Confidence 57899999998653
No 388
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=21.19 E-value=76 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.0
Q ss_pred HhccCCCceEEEEeeecCCCC
Q 037161 20 ESINKEDGKLIVVEAVLPELP 40 (99)
Q Consensus 20 ~al~~pgg~l~I~e~~~~~~~ 40 (99)
+++ ++|.+++|+|-++....
T Consensus 189 ~~l-~~G~rVLIVDDv~~TGg 208 (268)
T TIGR01743 189 RSL-KTGSKVLIIDDFMKAGG 208 (268)
T ss_pred hhC-CCcCEEEEEeeecccCH
Confidence 567 88999999998887553
No 389
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=21.16 E-value=1.1e+02 Score=18.39 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred CceecCHHHHHHHHHHcCCCe
Q 037161 62 RGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~ 82 (99)
+|.+-|.+....+|+.+|-++
T Consensus 13 ~G~eITae~I~~IL~AAGveV 33 (106)
T cd05832 13 AGKEINEENLKKVLEAAGIEV 33 (106)
T ss_pred cCCCCCHHHHHHHHHHhCCcc
Confidence 788999999999999999444
No 390
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=21.06 E-value=1.2e+02 Score=18.09 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.4
Q ss_pred CceecCHHHHHHHHHHcCCCe
Q 037161 62 RGKVRTKHEFINLATAAGFSG 82 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~ 82 (99)
+|..-|.+....+|+.+|-++
T Consensus 13 ~g~~iT~e~I~~IL~AAGv~v 33 (105)
T TIGR03685 13 AGKEINEENLKAVLEAAGVEV 33 (105)
T ss_pred cCCCCCHHHHHHHHHHhCCcc
Confidence 788999999999999999443
No 391
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=20.97 E-value=1.6e+02 Score=17.46 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccCCCceEEEEee
Q 037161 11 CLKLLKNCYESINKEDGKLIVVEA 34 (99)
Q Consensus 11 ~~~iL~~~~~al~~pgg~l~I~e~ 34 (99)
-+++.++...+| .|.|++..|.
T Consensus 62 rqkL~krf~~~l--k~kRviCLDI 83 (109)
T COG4551 62 RQKLQKRFKASL--KGKRVICLDI 83 (109)
T ss_pred HHHHHHHhhHHh--cCCeEEEEeC
Confidence 467888888888 5678888873
No 392
>PRK09902 hypothetical protein; Provisional
Probab=20.94 E-value=2.4e+02 Score=19.10 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHhccC-------CCceEEEEeeecC
Q 037161 6 WSDEHCLKLLKNCYESINK-------EDGKLIVVEAVLP 37 (99)
Q Consensus 6 w~d~~~~~iL~~~~~al~~-------pgg~l~I~e~~~~ 37 (99)
+++.....|++.|.+++ + -+|.+.+.+..++
T Consensus 125 ~~~~~k~~il~~va~~i-a~LH~~Gv~Hgdly~khIll~ 162 (216)
T PRK09902 125 YSDEVRQAMLKAVALAF-KKMHSVNRQHGCCYVRHIYVK 162 (216)
T ss_pred cchHHHHHHHHHHHHHH-HHHHHCCCcCCCCCHhheeec
Confidence 45556678888888877 4 3678888777765
No 393
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=20.86 E-value=1.5e+02 Score=17.91 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHcCCCeeEEEEc
Q 037161 66 RTKHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 66 rt~~e~~~ll~~aGf~~~~~~~~ 88 (99)
+...+..+.+.++||.++....+
T Consensus 15 ~~~g~Il~~i~~~gf~I~~~k~~ 37 (135)
T smart00562 15 GLIGEIISRFERKGFKIVAMKML 37 (135)
T ss_pred ccHHHHHHHHHHCCCEEEEEeee
Confidence 33567888889999999988754
No 394
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.84 E-value=95 Score=23.49 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=15.3
Q ss_pred ccCChHHHHHHHHHHHH
Q 037161 4 HAWSDEHCLKLLKNCYE 20 (99)
Q Consensus 4 Hdw~d~~~~~iL~~~~~ 20 (99)
|+|+|++.-.||..++.
T Consensus 455 ~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 455 HNWSDREIELLLSEAFR 471 (484)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999998875
No 395
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=20.80 E-value=95 Score=17.18 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCCCee
Q 037161 69 HEFINLATAAGFSGI 83 (99)
Q Consensus 69 ~e~~~ll~~aGf~~~ 83 (99)
+.+.++|+++||...
T Consensus 54 ~~LN~~l~~~Gf~~~ 68 (73)
T PF14794_consen 54 AKLNQALQKAGFDEE 68 (73)
T ss_dssp HHHHHHHHHTT----
T ss_pred HHHHHHHHHcCCCce
Confidence 345678899999764
No 396
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=20.70 E-value=1.2e+02 Score=20.54 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=37.6
Q ss_pred HHHHHHHHHhccCCCceEEEEeeecCCCCCCchhhh-hh----hhhchHhhh-----cCCCceecCHHHHHHHHHHcCCC
Q 037161 12 LKLLKNCYESINKEDGKLIVVEAVLPELPENSATSK-AN----SQIDVFMLT-----HSPRGKVRTKHEFINLATAAGFS 81 (99)
Q Consensus 12 ~~iL~~~~~al~~pgg~l~I~e~~~~~~~~~~~~~~-~~----~~~dl~m~~-----~~~~g~~rt~~e~~~ll~~aGf~ 81 (99)
-..|+.+++.| +|||.|...- +.. . .+.. .. ....+.... .......|..++|++-+...|-.
T Consensus 144 ~~fl~~~a~~L-k~gG~l~~aT---D~~--~-y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE~k~~~~g~~ 216 (227)
T COG0220 144 PEFLKLYARKL-KPGGVLHFAT---DNE--E-YFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKFRRLGHP 216 (227)
T ss_pred HHHHHHHHHHc-cCCCEEEEEe---cCH--H-HHHHHHHHHHhcchhhhccccccccccccccCCCCcHHHHHHHhCCCc
Confidence 45788999999 9999887632 111 0 0000 00 000011100 01134457788999999999977
Q ss_pred eeEEE
Q 037161 82 GIRFQ 86 (99)
Q Consensus 82 ~~~~~ 86 (99)
+....
T Consensus 217 i~~l~ 221 (227)
T COG0220 217 VYDLE 221 (227)
T ss_pred eEEEE
Confidence 66543
No 397
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=20.70 E-value=88 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=17.3
Q ss_pred ecCHHHHHHHHHHcCCCee
Q 037161 65 VRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 65 ~rt~~e~~~ll~~aGf~~~ 83 (99)
.|+.+|..+++++.||+.+
T Consensus 341 ~r~~~~~~~~i~~~g~~~~ 359 (366)
T TIGR02351 341 ERSVAEVEEDLRSKGLQPV 359 (366)
T ss_pred CCCHHHHHHHHHHCCCeec
Confidence 4999999999999999874
No 398
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.49 E-value=1.2e+02 Score=15.62 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHcCCCee
Q 037161 67 TKHEFINLATAAGFSGI 83 (99)
Q Consensus 67 t~~e~~~ll~~aGf~~~ 83 (99)
..++..+.|+++||++.
T Consensus 53 ~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 53 NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHCCCeee
Confidence 34589999999999764
No 399
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=20.44 E-value=2.1e+02 Score=20.12 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=29.7
Q ss_pred CceEEEEeee-cCCCCCCchhhhhhhhhchHhhhcCCCceecCHHHHHHHHHHcCCCee
Q 037161 26 DGKLIVVEAV-LPELPENSATSKANSQIDVFMLTHSPRGKVRTKHEFINLATAAGFSGI 83 (99)
Q Consensus 26 gg~l~I~e~~-~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 83 (99)
+|.|++.|.+ -|+. . +++|..-......-...+.+-+++|+.+.|+...
T Consensus 202 ~g~ivL~DEi~TPDs-~--------R~W~~~~~~~g~~~~~lDK~~~R~~l~~~~~~~~ 251 (279)
T cd01414 202 NGEIILIDEVLTPDS-S--------RFWPADSYEPGKEQPSFDKQFVRDWLEASGWDKQ 251 (279)
T ss_pred CCcEEEEEecCCCCc-c--------eeeeccccccCCCccccChHHHHHHHHhcCCCcc
Confidence 4778888877 4433 1 2344321110001246888899999999998854
No 400
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=20.38 E-value=2.3e+02 Score=17.52 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHhccCCCceEEEE
Q 037161 7 SDEHCLKLLKNCYESINKEDGKLIVV 32 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pgg~l~I~ 32 (99)
+.++-.++-+++.+.| ++|..+++.
T Consensus 4 s~~~t~~l~~~l~~~l-~~~~~i~l~ 28 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPL-DFGTVVLLK 28 (133)
T ss_pred CHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 4566778888888888 776655543
No 401
>PF05134 T2SL: Type II secretion system (T2SS), protein L; InterPro: IPR024230 The general secretion pathway of Gram-negative bacteria is responsible for extracellular secretion of a number of different proteins, including proteases and toxins. This pathway supports secretion of proteins across the cell envelope in two distinct steps, in which the second step, involving translocation through the outer membrane, is assisted by at least 13 different gene products. GspL is predicted to contain a large cytoplasmic domain and has been shown to interact with the autophosphorylating cytoplasmic membrane protein GspE. It is thought that the tri-molecular complex of GspL, GspE and GspM might be involved in regulating the opening and closing of the secretion pore and/or transducing energy to the site of outer membrane translocation []. This N-terminal domain is found in general secretion pathway protein L sequences from several Gram-negative bacteria. It is a cytoplasmic domain that shows structural homology with the superfamily of actin-like ATPases []. ; PDB: 2BH1_B 1YF5_L 1W97_L.
Probab=20.36 E-value=1.4e+02 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCeeEEEEc
Q 037161 68 KHEFINLATAAGFSGIRFQCF 88 (99)
Q Consensus 68 ~~e~~~ll~~aGf~~~~~~~~ 88 (99)
.+.|.++|+++|++...+.+-
T Consensus 114 l~~wl~~l~~~Gl~~~~v~Pd 134 (230)
T PF05134_consen 114 LQRWLDALAAAGLEPDAVVPD 134 (230)
T ss_dssp HHHHHHHHHHTT-EEEEEEEG
T ss_pred HHHHHHHHHHCCCcceEEEEc
Confidence 678999999999999999873
No 402
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=20.28 E-value=2.6e+02 Score=20.47 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCC----eeEEEEcCCCeeEEEEEC
Q 037161 70 EFINLATAAGFS----GIRFQCFVCNSWVMEFYK 99 (99)
Q Consensus 70 e~~~ll~~aGf~----~~~~~~~~~~~~vie~~k 99 (99)
-+.+++.+.|+. ..++.+++...++||++|
T Consensus 113 lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 146 (353)
T cd05176 113 IMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVP 146 (353)
T ss_pred HHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeC
Confidence 456677888864 355556777899999986
No 403
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=20.24 E-value=1.9e+02 Score=16.63 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhccCCCceEEE
Q 037161 8 DEHCLKLLKNCYESINKEDGKLIV 31 (99)
Q Consensus 8 d~~~~~iL~~~~~al~~pgg~l~I 31 (99)
..+....++.+.+++ +.|..++|
T Consensus 72 ~~~~~~~~~~~~~~l-~~g~~v~i 94 (130)
T TIGR00530 72 IRAIATALKAAIEVL-KQGRSIGV 94 (130)
T ss_pred hHHHHHHHHHHHHHH-hCCCEEEE
Confidence 345678889999999 77766554
No 404
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=20.21 E-value=61 Score=21.77 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeeecC
Q 037161 9 EHCLKLLKNCYESINKEDGKLIVVEAVLP 37 (99)
Q Consensus 9 ~~~~~iL~~~~~al~~pgg~l~I~e~~~~ 37 (99)
+...+.|+..+.-+ +||+-++|-|..+.
T Consensus 124 ~hvl~eL~~y~plv-~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 124 EHVLAELEAYAPLV-SPGSYLIVEDTIIE 151 (206)
T ss_dssp SSHHHHHHHHHHT---TT-EEEETSHHHH
T ss_pred HHHHHHHHHhCccC-CCCCEEEEEecccc
Confidence 44788888888888 99998888887654
No 405
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=20.08 E-value=1.5e+02 Score=16.62 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHhccCCC-ceEEEEe
Q 037161 7 SDEHCLKLLKNCYESINKED-GKLIVVE 33 (99)
Q Consensus 7 ~d~~~~~iL~~~~~al~~pg-g~l~I~e 33 (99)
+|.....+.+.+.+|| ..+ +.|-+-|
T Consensus 18 s~~s~dev~~~v~~Al-~~~~~~l~LtD 44 (74)
T PF11305_consen 18 SDQSADEVEAAVTDAL-ADGSGVLTLTD 44 (74)
T ss_pred cCCCHHHHHHHHHHHH-hCCCceEEEEe
Confidence 3455678888899999 766 5555544
No 406
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=20.04 E-value=1e+02 Score=25.08 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.0
Q ss_pred CceecCHHHHHHHHHHcCCCeeEEEE
Q 037161 62 RGKVRTKHEFINLATAAGFSGIRFQC 87 (99)
Q Consensus 62 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 87 (99)
||+. .+|++.+|+.||+.++++.-
T Consensus 271 ngki--iqelE~~FrgAGW~VikviW 294 (887)
T COG2609 271 NGKI--IQELEGIFRGAGWNVIKVIW 294 (887)
T ss_pred Cchh--HHHHHHHhccCCceEEEEEe
Confidence 4444 78999999999999999863
Done!