BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037162
(689 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana
GN=FRS10 PE=2 SV=2
Length = 685
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 189 LLMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMK 248
LL G+ + + CV L+ E ++ WAL+ M P I+ D + L
Sbjct: 307 LLGVFFGIDNNGKAMLLGCVLLQDESCRSFTWALQTFVRFMRGRH-PQTILTDIDTGLKD 365
Query: 249 AIKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAASEEEFAQRLK 308
AI ++ P+ ++ HI + + + ++ +E F + +++L A + +EF Q+
Sbjct: 366 AIGREMPNTNHVVFMSHIVSKLASWFSQTLGSH--YEEFRAGFDMLCRAGNVDEFEQQWD 423
Query: 309 SMESDFSKYP---TALTYIRNSSW 329
+ + F P AL Y +SW
Sbjct: 424 LLVTRFGLVPDRHAALLYSCRASW 447
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11
PE=2 SV=1
Length = 680
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 194 VGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKK 253
VGV + + CV L E ++ WAL+ G M P I+ D + L +AI +
Sbjct: 297 VGVNNYGVPCFFGCVLLRDENLRSWSWALQAFTGFMN-GKAPQTILTDHNMCLKEAIAGE 355
Query: 254 FPSATTLLCRWHI 266
P+ LC W +
Sbjct: 356 MPATKHALCIWMV 368
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 207 CVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKKKFPSATTLLCRWHI 266
C ++ +E E +++W M + P I D + + AI FP A C+WHI
Sbjct: 332 CAFIINETEASFVWLFNTWLAAMSAHP-PVSITTDHDAVIRAAIMHVFPGARHRFCKWHI 390
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 190 LMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKA 249
L+ GV T + C +L E +Y W L+ VM+ + P IV DR L A
Sbjct: 313 LVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRS--PQTIVTDRCKPLEAA 370
Query: 250 IKKKFPSATTLLCRWHISRNV--------------LANCKKLFETNEIWETFISSWNLLV 295
I + FP + HI R + A K ++ET ++ E F ++W +V
Sbjct: 371 ISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVRKAFTKAVYETLKVVE-FEAAWGFMV 429
>sp|P35883|TRA0_MYCSM Transposase for insertion sequence element IS6120 OS=Mycobacterium
smegmatis PE=3 SV=1
Length = 323
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 211 ESERENNYIWALERLKGVMEENMLPSVIVI-DRELALMKAIKKKFPSATTLLCRWHISRN 269
+ RE+ WA + L+ M V+ I D L KA+++ FP+ C +H N
Sbjct: 101 DGYRESAESWA-DLLRDCKRRGMTAPVLAIGDGALGFWKAVREVFPATKEQRCWFHKQAN 159
Query: 270 VLANCKK------LFETNEIWETFISSWNLLVLAASEEEFAQ-RLKSMESDF-SKYPTAL 321
VLA K L EI+ A + + AQ +K+ E+DF +KYP A+
Sbjct: 160 VLAALPKSAHPSALAAIKEIYN------------AEDIDKAQIAVKAFEADFGAKYPKAV 207
Query: 322 TYIRN 326
I +
Sbjct: 208 AKITD 212
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 190 LMKIVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKA 249
L +GV + C + E ++W ++ M P VI+ D++ LM A
Sbjct: 291 LALFIGVNHHSQPMLLGCALVADESMETFVWLIKTWLRAMG-GRAPKVILTDQDKFLMSA 349
Query: 250 IKKKFPSATTLLCRWHISRNVLANCKKLFETNEIWETFISSWNLLVLAA-SEEEFAQRLK 308
+ + P+ WH+ + + + + E F+ +N + + +++EF R
Sbjct: 350 VSELLPNTRHCFALWHVLEKIPEYFSHVMKRH---ENFLLKFNKCIFRSWTDDEFDMRWW 406
Query: 309 SMESDFS 315
M S F
Sbjct: 407 KMVSQFG 413
>sp|Q00312|RBF1_CANAX Transcription factor RBF1 OS=Candida albicans GN=RBF1 PE=1 SV=1
Length = 527
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 23/94 (24%)
Query: 45 EKSDVAANGRKPRII-FTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKL--------KG 95
E+ + N KP+ + F CERSG +R K + ++ KC ++L K
Sbjct: 207 ERCKIVINSSKPKAVYFQCERSGSFRTTVKDATKRQRIAYTKRNKCAYRLVANLYPNEKD 266
Query: 96 QKMANNDD--------------WALIVICGFHNH 115
QK N D W L +I HNH
Sbjct: 267 QKRKNKPDEPGHNEENSRISEMWVLRMINPQHNH 300
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 193 IVGVTSTDLTFSVCCVYLESERENNYIWALERLKGVMEENMLPSVIVIDRELALMKAIKK 252
GV C + E + ++IW + M + P +V D++ A+ A +
Sbjct: 265 FTGVNHHGQAILFGCALILDESDTSFIWLFKTFLTAMRDQP-PVSLVTDQDRAIQIAAGQ 323
Query: 253 KFPSATTLLCRWHISRNV-----------------LANCKKLFETNEIWETFISSWNLLV 295
FP A + +W + R L NC ET E F SSW+ ++
Sbjct: 324 VFPGARHCINKWDVLREGQEKLAHVCLAYPSFQVELYNCINFTET---IEEFESSWSSVI 380
>sp|A7GVT2|ILVD_CAMC5 Dihydroxy-acid dehydratase OS=Campylobacter curvus (strain 525.92)
GN=ilvD PE=3 SV=1
Length = 557
Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 390 PDVFACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKTLSC 437
P +F G P Y + G+PI L++ K + +++++E K + C
Sbjct: 136 PTIFVSGGPMRKGYTKSGQPIDLATAFEAVGKFETKEISEEELKEIEC 183
>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana
GN=At3g59200 PE=2 SV=1
Length = 520
Score = 32.7 bits (73), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 394 ACGSPEIAEYKREGRPIPLSSLHSHRKKLDLLQVNQDESKT--------LSCMPEIEMIV 445
ACG+ + KR +P LSS K+ L N +E + L MP +E +V
Sbjct: 373 ACGN--VCCCKRPKQPSCLSSSPVKVLKIFLFDDNDEEDGSEMRQIKYFLEKMPRLEELV 430
Query: 446 KRFNDSDDPAKVQLLRKLRELANPAS 471
+N + DPA ++L +KL+++ AS
Sbjct: 431 VYYNTAYDPAVLELSKKLQKIPKIAS 456
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,322,754
Number of Sequences: 539616
Number of extensions: 10989080
Number of successful extensions: 27574
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 27565
Number of HSP's gapped (non-prelim): 36
length of query: 689
length of database: 191,569,459
effective HSP length: 124
effective length of query: 565
effective length of database: 124,657,075
effective search space: 70431247375
effective search space used: 70431247375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)