Query 037162
Match_columns 689
No_of_seqs 421 out of 1354
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.6 3E-16 1E-20 151.3 5.9 121 554-687 55-176 (185)
2 3by4_A OTU1, ubiquitin thioest 99.5 8.1E-15 2.8E-19 145.1 7.3 115 557-687 19-134 (212)
3 3phx_A RNA-directed RNA polyme 99.4 3E-13 1E-17 130.8 6.0 117 558-687 31-154 (185)
4 3phu_A RNA-directed RNA polyme 99.4 5E-13 1.7E-17 131.9 6.1 117 558-687 31-154 (219)
5 1tff_A Ubiquitin thiolesterase 98.9 1.8E-09 6.1E-14 108.4 8.8 90 587-687 134-225 (234)
6 3dkb_A Tumor necrosis factor, 98.7 3E-08 1E-12 101.9 9.8 126 561-688 115-278 (390)
7 2zfy_A Ubiquitin thioesterase 98.6 5.4E-08 1.9E-12 97.7 7.1 90 587-687 137-229 (234)
8 3zrh_A Ubiquitin thioesterase 98.5 1.6E-07 5.5E-12 98.1 8.3 117 562-688 193-344 (454)
9 4dhi_B Ubiquitin thioesterase 98.4 6.3E-07 2.2E-11 91.2 8.1 88 588-687 173-268 (284)
10 4ddg_A Ubiquitin-conjugating e 98.2 1E-06 3.4E-11 95.6 6.6 91 586-687 301-394 (399)
11 2ayd_A WRKY transcription fact 94.8 0.11 3.8E-06 41.7 7.9 58 38-117 16-73 (76)
12 1wj2_A Probable WRKY transcrip 94.2 0.094 3.2E-06 42.4 6.2 30 88-117 47-76 (78)
13 2rpr_A Flywch-type zinc finger 88.6 0.65 2.2E-05 38.4 5.5 25 88-119 51-75 (87)
14 2l69_A Rossmann 2X3 fold prote 51.2 12 0.0004 30.8 3.4 32 17-48 4-35 (134)
15 2xzm_O RPS13E; ribosome, trans 43.7 38 0.0013 30.6 5.8 33 129-161 29-62 (153)
16 3u5c_N S27A, YS15, 40S ribosom 43.1 36 0.0012 30.7 5.5 32 129-160 27-59 (151)
17 3j20_Q 30S ribosomal protein S 35.9 50 0.0017 30.1 5.3 33 129-161 27-60 (158)
18 1je8_A Nitrate/nitrite respons 28.2 1.1E+02 0.0037 24.1 5.8 45 111-156 3-47 (82)
19 2lju_A Putative oxidoreductase 27.4 32 0.0011 29.4 2.4 26 18-47 63-88 (108)
20 1tc3_C Protein (TC3 transposas 23.3 85 0.0029 21.1 3.9 42 128-176 4-45 (51)
21 2kw0_A CCMH protein; oxidoredu 21.6 42 0.0014 27.7 2.0 33 130-162 41-73 (90)
22 2xv9_A ABA-1A1 repeat UNIT; li 21.2 1.2E+02 0.0042 26.8 5.1 47 112-160 5-51 (134)
23 2qsr_A Transcription-repair co 20.5 1.1E+02 0.0039 28.2 5.0 40 286-325 29-68 (173)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.61 E-value=3e-16 Score=151.27 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=87.7
Q ss_pred cccccccccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccccc
Q 037162 554 RPYIRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWM 633 (689)
Q Consensus 554 ~~~i~~i~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~Wl 633 (689)
+.....+++|+|||||.|||||++|..+++.|..||+.++++|++++++|.+++. +.|+++++.+ ..+..|.
T Consensus 55 ~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~--~~~e~Y~~~m------~~~~~WG 126 (185)
T 3pfy_A 55 DKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT--EDFTTYINRK------RKNNCHG 126 (185)
T ss_dssp HHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------------C
T ss_pred HHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHh------hCCCccc
Confidence 6778889999999999999999999999999999999999999999999999874 4589999988 4578899
Q ss_pred cccchhhhhccccceeEEEEccCce-eeccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162 634 IMPNTGYLIAFKYNVIGLLISMQQC-LTFLPLRSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 634 ~~~~~g~~iA~~y~~pv~~~s~~~s-~t~~P~~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
+.+... ++|..|++||++++.+.+ ...|+ +.. ....+||+|+|.+++||
T Consensus 127 g~iEL~-AlS~~~~v~I~V~~~~~~~i~i~~---g~~-~~~~~~I~L~Y~~~~HY 176 (185)
T 3pfy_A 127 NHIEMQ-AMAEMYNRPVEVYQYSTEPINTFH---GIH-QNEDEPIRVSYHRNIHY 176 (185)
T ss_dssp CHHHHH-HHHHHHTSCEEEESSCSSCSEEEC---TTS-CCTTSCEEEEEETTTEE
T ss_pred hHHHHH-HHHHhhCCcEEEEECCCCCeEEec---Ccc-CCCCCEEEEEECCCCCc
Confidence 998765 999999999999986532 12222 111 11258999999999998
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.52 E-value=8.1e-15 Score=145.07 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=95.6
Q ss_pred ccccccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCccccccccc
Q 037162 557 IRGAKDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDHWMIMP 636 (689)
Q Consensus 557 i~~i~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~Wl~~~ 636 (689)
...+.+|+|||||+|||||++| .+++.|..||+.+++.|++|+++|.+.+-+ ..|+++++.+ ..+..|.+.+
T Consensus 19 ~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m------~~~~~WGg~i 90 (212)
T 3by4_A 19 VLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQWI------LKMESWGGAI 90 (212)
T ss_dssp EEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHHT------TSTTSCCCHH
T ss_pred CeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHHh------cCCCEEccHH
Confidence 5678899999999999999999 788999999999999999999999765533 6799999999 4578999998
Q ss_pred chhhhhccccceeEEEEccC-ceeeccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162 637 NTGYLIAFKYNVIGLLISMQ-QCLTFLPLRSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 637 ~~g~~iA~~y~~pv~~~s~~-~s~t~~P~~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
++. ++|..|++||++++.. .+...|+ +.. .+++|+|+|. |+||
T Consensus 91 EL~-Als~~~~~~I~V~~~~~~~~~~~~----~~~--~~~~I~L~Y~-g~HY 134 (212)
T 3by4_A 91 EIG-IISDALAVAIYVVDIDAVKIEKFN----EDK--FDNYILILFN-GIHY 134 (212)
T ss_dssp HHH-HHHHHHTCEEEEEETTTTEEEEES----TTT--CSEEEEEEEC-SSCE
T ss_pred HHH-HHHHHHCCCEEEEECCCCCeEEeC----CCC--CCCeEEEEEc-CCcc
Confidence 875 9999999999999854 2333332 222 2578999998 8998
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.37 E-value=3e-13 Score=130.76 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=89.8
Q ss_pred cccccccCCCCcchHHHHHHhcCC-Ccc-----HHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccc
Q 037162 558 RGAKDVAADGNCGFRTVADLIGIG-EDN-----WARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDH 631 (689)
Q Consensus 558 ~~i~~v~~dg~Cgfraia~~l~~~-~~~-----~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 631 (689)
-.|+.|+|||||.|||||.+|+.+ ++. +..||+..++.|.+|++++. .+..|+++++.+ ..++.
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~----~~~~~~~Y~~~m------~~~~~ 100 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL----VGLSLEDYLKRM------LSDNE 100 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHH----HCCCHHHHHHHH------TSTTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhh----cCCCHHHHHHHh------hCCCc
Confidence 346678999999999999999998 566 99999999999999998821 356799999999 55789
Q ss_pred cccccchhhhhccccceeEEEEccCceeeccCC-CCCCCCCCCCCcEEEEEecCCCc
Q 037162 632 WMIMPNTGYLIAFKYNVIGLLISMQQCLTFLPL-RSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 632 Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t~~P~-~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
|.+..+.. ++|..|+++|++++.+....++.. ..++.. ..++|.|+|.+++||
T Consensus 101 WGg~iEL~-Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HY 154 (185)
T 3phx_A 101 WGSTLEAS-MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHF 154 (185)
T ss_dssp CCBHHHHH-HHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEE
T ss_pred cCcHHHHH-HHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCc
Confidence 99988875 999999999999975432211111 112222 157899999966998
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.35 E-value=5e-13 Score=131.91 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=90.3
Q ss_pred cccccccCCCCcchHHHHHHhcCC-Ccc-----HHHHHHHHHHHHHhhhhhhhhhccCchhHHHHHhhhcCCCCCCcccc
Q 037162 558 RGAKDVAADGNCGFRTVADLIGIG-EDN-----WARVRRDLVDELQCHYNEYTLLLGYAGRYQELLHLLSNFEPNPSYDH 631 (689)
Q Consensus 558 ~~i~~v~~dg~Cgfraia~~l~~~-~~~-----~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 631 (689)
-.|+.|+|||||.|||||.+|+.+ ++. +..||+..++.|.+|++++. .+..|+++++.+ ..++.
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~----~~~~feeY~~~m------~~~g~ 100 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL----VGLSLEDYLKRM------LSDNE 100 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHH----HCCCHHHHHHHH------HSTTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhh----cCCCHHHHHHHh------cCCCc
Confidence 446778999999999999999988 555 89999999999999998821 346799999999 45789
Q ss_pred cccccchhhhhccccceeEEEEccCcee-eccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162 632 WMIMPNTGYLIAFKYNVIGLLISMQQCL-TFLPLRSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 632 Wl~~~~~g~~iA~~y~~pv~~~s~~~s~-t~~P~~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
|.+..... ++|..|+++|++++.+... +......++... .++|+|+|.+++||
T Consensus 101 WGG~iEL~-AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~--~~~I~L~Y~g~~HY 154 (219)
T 3phu_A 101 WGSTLEAS-MLAKEMGITIIIWTVAASDEVEAGIKFGDGDV--FTAVNLLHSGQTHF 154 (219)
T ss_dssp CCCHHHHH-HHHHHTTCCEEEEEESSSSBEEEEEEESSCCT--TTSEEEEEETTTEE
T ss_pred cCCHHHHH-HHHHHhCCCEEEEEecCCCCceeEEEecCCCC--CCeEEEEECCCcCc
Confidence 99988875 9999999999999643220 111112233322 57899999966998
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=98.92 E-value=1.8e-09 Score=108.36 Aligned_cols=90 Identities=4% Similarity=-0.085 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCceee-ccCC
Q 037162 587 RVRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLT-FLPL 664 (689)
Q Consensus 587 ~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t-~~P~ 664 (689)
.+|..-...|+.|+++|.+++.++..+++++. .+ .++..|.+...+. +||+++++||.++..+.+.. .=+.
T Consensus 134 ~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~v------e~~~~~~~~iei~-ALa~aL~v~I~V~~~d~~~~~~~~~ 206 (234)
T 1tff_A 134 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQIT-ALSQALSIALQVEYVDEMDTALNHH 206 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHHTCCEEEEECC-------CC
T ss_pred HHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHh------hhhhcccccHHHH-HHHHHhCCCEEEEEcCCCCCccccc
Confidence 46777788899999999999876568999999 67 5678999887775 99999999999998665531 1112
Q ss_pred CCCCCCCCCCCcEEEEEecCCCc
Q 037162 665 RSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 665 ~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
..++. ..|.|+|+|-+ .||
T Consensus 207 ~~~~~---~~~~I~LlY~p-gHY 225 (234)
T 1tff_A 207 VFPEA---ATPSVYLLYKT-SHY 225 (234)
T ss_dssp CCCCC---SSCSEEEEEET-TEE
T ss_pred cCCCC---CCCeEEEEECC-CCc
Confidence 22222 25779999995 597
No 6
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.72 E-value=3e-08 Score=101.89 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=91.5
Q ss_pred ccccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhh-hh-hh-----h-----------cc---CchhHHHHHhh
Q 037162 561 KDVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYN-EY-TL-----L-----------LG---YAGRYQELLHL 619 (689)
Q Consensus 561 ~~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~-~y-~~-----~-----------~~---~~~~~~~~~~~ 619 (689)
....|||||..+|++..+..-.|.-..+|+.|..-|..... .+ .. . |. -..+|+.|+..
T Consensus 115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~ 194 (390)
T 3dkb_A 115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM 194 (390)
T ss_dssp BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence 34789999999999999999889999999999988886431 11 10 0 00 14679999999
Q ss_pred hcCCCCCCcccccc-ccc-chhhhhccccceeEEEEcc--------C-------ceeeccCCCCCCCCCCCCCcEEEEEe
Q 037162 620 LSNFEPNPSYDHWM-IMP-NTGYLIAFKYNVIGLLISM--------Q-------QCLTFLPLRSIPGPRSSHKIIAIGYI 682 (689)
Q Consensus 620 l~~~~~~~~~~~Wl-~~~-~~g~~iA~~y~~pv~~~s~--------~-------~s~t~~P~~~~p~~~~~~~~i~l~~~ 682 (689)
........+.+.=+ ++- -|-++|||...||||+|+. + .+.+||||..||.-+.. .||+|||.
T Consensus 195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~r-sPI~LgY~ 273 (390)
T 3dkb_A 195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYR-YPIVLGYD 273 (390)
T ss_dssp TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCS-SCEEEEEC
T ss_pred hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccC-CceEEEec
Confidence 86432222222111 222 3778899999999999951 1 26899999999987764 58999999
Q ss_pred cCCCcc
Q 037162 683 YGCHFI 688 (689)
Q Consensus 683 ~~nHfv 688 (689)
+ +||.
T Consensus 274 s-~HFs 278 (390)
T 3dkb_A 274 S-HHFV 278 (390)
T ss_dssp S-SCEE
T ss_pred c-Ccee
Confidence 6 8994
No 7
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=98.59 E-value=5.4e-08 Score=97.67 Aligned_cols=90 Identities=12% Similarity=-0.059 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCceee--ccC
Q 037162 587 RVRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQCLT--FLP 663 (689)
Q Consensus 587 ~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s~t--~~P 663 (689)
.+|......|+.|+++|.+++.++..+++++. .+ .++..|.+...+. +||+++++||.++..+.+.. .-+
T Consensus 137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~v------e~~~~~~~~i~i~-ALa~al~v~I~V~~~d~~~~~~v~~ 209 (234)
T 2zfy_A 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHII-ALAQALSVSIQVEYMDRGEGGTTNP 209 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHHTCCEEEEECC-CCSSCCEE
T ss_pred HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHh------hhHhhcCCHHHHH-HHHHHhCCCEEEEEcCCCCCCcccc
Confidence 34555557888899999998876678999996 57 5578899887775 99999999999987554421 111
Q ss_pred CCCCCCCCCCCCcEEEEEecCCCc
Q 037162 664 LRSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 664 ~~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
...++.. .|.|+|+|-+ .||
T Consensus 210 ~~f~~~~---~p~I~LlY~p-gHY 229 (234)
T 2zfy_A 210 HIFPEGS---EPKVYLLYRP-GHY 229 (234)
T ss_dssp EEESTTC---CCSEEEEEET-TEE
T ss_pred eeCCCCC---CCeEEEEECC-CCc
Confidence 1112221 4789999995 597
No 8
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=98.08 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=87.8
Q ss_pred cccCCCCcchHHHHHHhcCCCccHHHHHHHHHHHHHhhhh-hhhh----------hcc-----Cc----hhHHHHHhhhc
Q 037162 562 DVAADGNCGFRTVADLIGIGEDNWARVRRDLVDELQCHYN-EYTL----------LLG-----YA----GRYQELLHLLS 621 (689)
Q Consensus 562 ~v~~dg~Cgfraia~~l~~~~~~~~~vr~~l~~el~~~~~-~y~~----------~~~-----~~----~~~~~~~~~l~ 621 (689)
...|||||..+|++..|..-.|....+|+.|..-|++... .|.. .+| ++ .+|+.|+....
T Consensus 193 ~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As 272 (454)
T 3zrh_A 193 WNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLAS 272 (454)
T ss_dssp CCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred eecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999999998886322 2211 221 22 45777887774
Q ss_pred CCCCCCccccccccc-chhhhhccccceeEEEEcc--------------CceeeccCCCCCCCCCCCCCcEEEEEecCCC
Q 037162 622 NFEPNPSYDHWMIMP-NTGYLIAFKYNVIGLLISM--------------QQCLTFLPLRSIPGPRSSHKIIAIGYIYGCH 686 (689)
Q Consensus 622 ~~~~~~~~~~Wl~~~-~~g~~iA~~y~~pv~~~s~--------------~~s~t~~P~~~~p~~~~~~~~i~l~~~~~nH 686 (689)
.+ .. ++- -|-++|||..+||||+|+. ..+.+|||+..||.-... .||+|||.+ .|
T Consensus 273 ~P------g~--sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~r-sPIvLgY~~-gH 342 (454)
T 3zrh_A 273 QP------GA--SLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWK-SPIALGYTR-GH 342 (454)
T ss_dssp ST------TC--CCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCS-CCEEEEEET-TE
T ss_pred CC------cc--hHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcC-CceEEEecc-cc
Confidence 31 11 221 3778999999999999962 235799999999987753 689999996 79
Q ss_pred cc
Q 037162 687 FI 688 (689)
Q Consensus 687 fv 688 (689)
|.
T Consensus 343 Fs 344 (454)
T 3zrh_A 343 FS 344 (454)
T ss_dssp EE
T ss_pred ee
Confidence 84
No 9
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=98.36 E-value=6.3e-07 Score=91.17 Aligned_cols=88 Identities=10% Similarity=-0.058 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCce-------e
Q 037162 588 VRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQC-------L 659 (689)
Q Consensus 588 vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s-------~ 659 (689)
+|..-..+|+.|+++|.+++.+...+++++. .+ .++.+|.+...+. +||+++++||-+.-.+.+ .
T Consensus 173 LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eV------e~~~~e~d~leI~-ALa~aL~v~I~V~ylDrs~g~~v~~h 245 (284)
T 4dhi_B 173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEI------EPMWKDADHLAIN-SLIKAAGTRVRIEYMDRTAAPNGGWH 245 (284)
T ss_dssp HHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHTTCCEEEEESSGGGCTTSSSE
T ss_pred HHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhc------eehhhcccHHHHH-HHHHHhCCcEEEEEecCCCCCCCccc
Confidence 4445556788899999998866667899998 67 5689999998887 999999999977643322 2
Q ss_pred eccCCCCCCCCCCCCCcEEEEEecCCCc
Q 037162 660 TFLPLRSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 660 t~~P~~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
..||-...+ ..|.|.|.|- +.||
T Consensus 246 ~~fp~~~~~----~~p~I~LLYr-pgHY 268 (284)
T 4dhi_B 246 YDIPSDDQQ----IAPEITLLYR-PGHY 268 (284)
T ss_dssp EEESCCCSC----CCCSEEEEEE-TTEE
T ss_pred ccCCCCCCC----CCCEEEEeec-CCCc
Confidence 213543221 1367999999 5797
No 10
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.23 E-value=1e-06 Score=95.57 Aligned_cols=91 Identities=13% Similarity=-0.045 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCchhHHHHHh-hhcCCCCCCcccccccccchhhhhccccceeEEEEccCce--eecc
Q 037162 586 ARVRRDLVDELQCHYNEYTLLLGYAGRYQELLH-LLSNFEPNPSYDHWMIMPNTGYLIAFKYNVIGLLISMQQC--LTFL 662 (689)
Q Consensus 586 ~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~Wl~~~~~g~~iA~~y~~pv~~~s~~~s--~t~~ 662 (689)
..+|..-...|+.|.++|.+++.+...+++++. .+ -+.+.|.+...+. +||++++++|.++-.+.+ ...-
T Consensus 301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~v------e~~~~e~d~l~I~-ALa~al~v~I~V~yld~~~~~~v~ 373 (399)
T 4ddg_A 301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHII-ALAQALSVSIQVEYMDRGEGGTTN 373 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHT------SSTTCCBCHHHHH-HHHHHHTCCCEEEECSCCSSSCCC
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhc------eeHHhhCcHHHHH-HHHHHcCCcEEEEEcCCCCCCccc
Confidence 345666667888899999998866667889888 66 5688999988876 899999999988743221 1111
Q ss_pred CCCCCCCCCCCCCcEEEEEecCCCc
Q 037162 663 PLRSIPGPRSSHKIIAIGYIYGCHF 687 (689)
Q Consensus 663 P~~~~p~~~~~~~~i~l~~~~~nHf 687 (689)
+...+.+. .+.|+|+|- +.||
T Consensus 374 ~~~~~~~~---~~~I~LLYr-PgHY 394 (399)
T 4ddg_A 374 PHIFPEGS---EPKVYLLYR-PGHY 394 (399)
T ss_dssp EEETTTTC---CCCCEEEEE-TBEE
T ss_pred eeeCCCCC---CCEEEEEEc-CCcc
Confidence 12222222 477999998 5687
No 11
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=94.80 E-value=0.11 Score=41.73 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=41.0
Q ss_pred cCeEEEEeecccCCCCCccEEEEEEecCCcCCCCCCCCCCCCCcCCceeeCCceEEEEEEeecCCCeEEEEEeCcccCCC
Q 037162 38 NGLVIVIEKSDVAANGRKPRIIFTCERSGVYRDRSPQGPKPIKATGIQKCKCPFKLKGQKMANNDDWALIVICGFHNHPA 117 (689)
Q Consensus 38 ~GF~v~i~rS~~~~~g~~~~~~~~C~r~G~~r~~~~~~~~~rr~~~s~ktgCpa~i~~~~~~~~~~W~V~~~~~~HNH~l 117 (689)
-||..|+--.+..++....|.+|.|+. .|||++=.+.+..++..-.+..+.++|||++
T Consensus 16 DGy~WRKYGQK~ikgs~~PRsYYrCt~----------------------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 16 DGYRWRKYGQKSVKGSPYPRSYYRCSS----------------------PGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp CSSCEEEEEEECCTTCSSCEEEEEECS----------------------TTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred CCchhhhCcccccCCCCCceeEeEcCC----------------------CCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 366666533333333344577788851 2899999998877777888999999999986
No 12
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=94.22 E-value=0.094 Score=42.37 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCceEEEEEEeecCCCeEEEEEeCcccCCC
Q 037162 88 KCPFKLKGQKMANNDDWALIVICGFHNHPA 117 (689)
Q Consensus 88 gCpa~i~~~~~~~~~~W~V~~~~~~HNH~l 117 (689)
|||++=.+.+...+..-.+..+.++|||++
T Consensus 47 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 47 GCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred CCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 799999998877777888889999999986
No 13
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=88.63 E-value=0.65 Score=38.38 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=18.0
Q ss_pred CCceEEEEEEeecCCCeEEEEEeCcccCCCCc
Q 037162 88 KCPFKLKGQKMANNDDWALIVICGFHNHPATQ 119 (689)
Q Consensus 88 gCpa~i~~~~~~~~~~W~V~~~~~~HNH~l~~ 119 (689)
+|+|++.... + . + .....|||++..
T Consensus 51 kCrARi~T~~---~-~--~-~~~~~HnH~p~~ 75 (87)
T 2rpr_A 51 GCRSRAITQG---H-R--I-MVMRSHCHQPDL 75 (87)
T ss_dssp CCCCEEEEET---T-E--E-EECSCCSSCCCH
T ss_pred CCCEEEEEcC---C-C--E-ECCCCcCCCCch
Confidence 7999998864 2 2 3 356889998763
No 14
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=51.25 E-value=12 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=27.7
Q ss_pred cccccCChhhHHHHHHHHHhhcCeEEEEeecc
Q 037162 17 VNVALMEREDMPREELQTELRNGLVIVIEKSD 48 (689)
Q Consensus 17 ~~~~F~S~eea~~~~~~yA~~~GF~v~i~rS~ 48 (689)
+-++|.+.||..+-+.+.-+++||.++..||-
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrsp 35 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSP 35 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCH
Confidence 44689999999999999999999999987764
No 15
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=43.66 E-value=38 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=27.5
Q ss_pred cCCH-HHHHHHHHhhhCCCChHHHHHHHHhcCCC
Q 037162 129 RLSK-EESNLLVDMSKNNVKPKDILHVLKKRDMH 161 (689)
Q Consensus 129 rLs~-e~k~~I~~L~~sgv~pr~Il~~L~~~~g~ 161 (689)
.+++ +..+.|..|.+.|++|++|--.|++++|-
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GI 62 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGI 62 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCC
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCC
Confidence 3554 45667889999999999999999999983
No 16
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=43.15 E-value=36 Score=30.71 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred cCCH-HHHHHHHHhhhCCCChHHHHHHHHhcCC
Q 037162 129 RLSK-EESNLLVDMSKNNVKPKDILHVLKKRDM 160 (689)
Q Consensus 129 rLs~-e~k~~I~~L~~sgv~pr~Il~~L~~~~g 160 (689)
.+++ +..+.|..|.+.|++|++|--.|++++|
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G 59 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIGVLLRDAHG 59 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCC
Confidence 3454 4566788999999999999999999997
No 17
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.91 E-value=50 Score=30.10 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=27.4
Q ss_pred cCCH-HHHHHHHHhhhCCCChHHHHHHHHhcCCC
Q 037162 129 RLSK-EESNLLVDMSKNNVKPKDILHVLKKRDMH 161 (689)
Q Consensus 129 rLs~-e~k~~I~~L~~sgv~pr~Il~~L~~~~g~ 161 (689)
.+++ +..+.|..|.+.|++|++|--.|++++|-
T Consensus 27 ~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gi 60 (158)
T 3j20_Q 27 EYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60 (158)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCC
Confidence 3454 45667889999999999999999999983
No 18
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.22 E-value=1.1e+02 Score=24.14 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=24.4
Q ss_pred CcccCCCCcccccccccccCCHHHHHHHHHhhhCCCChHHHHHHHH
Q 037162 111 GFHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLK 156 (689)
Q Consensus 111 ~~HNH~l~~~~~~h~~~RrLs~e~k~~I~~L~~sgv~pr~Il~~L~ 156 (689)
..|+|++..+.........|++.++..+.. ...|.+.++|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~l-~~~g~s~~eIA~~l~ 47 (82)
T 1je8_A 3 GSHHHHHHGSATTERDVNQLTPRERDILKL-IAQGLPNKMIARRLD 47 (82)
T ss_dssp --------------CCGGGSCHHHHHHHHH-HTTTCCHHHHHHHHT
T ss_pred CccCCCCCCchHHHHHHccCCHHHHHHHHH-HHcCCCHHHHHHHHC
Confidence 356666655443334457799988877665 578999999999884
No 19
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=27.39 E-value=32 Score=29.44 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=20.2
Q ss_pred ccccCChhhHHHHHHHHHhhcCeEEEEeec
Q 037162 18 NVALMEREDMPREELQTELRNGLVIVIEKS 47 (689)
Q Consensus 18 ~~~F~S~eea~~~~~~yA~~~GF~v~i~rS 47 (689)
.+.|+|.|+|.+ ||.++|....+.-.
T Consensus 63 ~L~F~skE~Aia----yAek~G~~y~V~ep 88 (108)
T 2lju_A 63 CLSFTTRELAIA----YAVAHKIDYTVLQD 88 (108)
T ss_dssp CEEESSHHHHHH----HHHHTTCEEEEECS
T ss_pred eEecCCHHHHHH----HHHHcCCEEEEecC
Confidence 459999999986 57788888877543
No 20
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.27 E-value=85 Score=21.07 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=30.3
Q ss_pred ccCCHHHHHHHHHhhhCCCChHHHHHHHHhcCCCccchhhHHHHHHHHh
Q 037162 128 GRLSKEESNLLVDMSKNNVKPKDILHVLKKRDMHNATTIRAIYNARRKC 176 (689)
Q Consensus 128 RrLs~e~k~~I~~L~~sgv~pr~Il~~L~~~~g~~~~t~kDIyN~~~k~ 176 (689)
+.++++++..|..+...|++.++|...|. .+...|++.+..+
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lg-------is~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKIS-------RSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHhhH
Confidence 45788888888888889999999988763 2345566555443
No 21
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=21.61 E-value=42 Score=27.68 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhhCCCChHHHHHHHHhcCCCc
Q 037162 130 LSKEESNLLVDMSKNNVKPKDILHVLKKRDMHN 162 (689)
Q Consensus 130 Ls~e~k~~I~~L~~sgv~pr~Il~~L~~~~g~~ 162 (689)
+..+.+.+|.++...|-+..+|+..|..++|+.
T Consensus 41 iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdf 73 (90)
T 2kw0_A 41 IATDLRQKVYELMQEGKSKKEIVDYMVARYGNF 73 (90)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCe
Confidence 445788889999999999999999999999974
No 22
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=21.18 E-value=1.2e+02 Score=26.84 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=34.6
Q ss_pred cccCCCCcccccccccccCCHHHHHHHHHhhhCCCChHHHHHHHHhcCC
Q 037162 112 FHNHPATQYLEGHSFAGRLSKEESNLLVDMSKNNVKPKDILHVLKKRDM 160 (689)
Q Consensus 112 ~HNH~l~~~~~~h~~~RrLs~e~k~~I~~L~~sgv~pr~Il~~L~~~~g 160 (689)
.|.|.+..... .....||++|+.+|..|...|-+..+|+..+-..+.
T Consensus 5 ~~~~~le~~~~--~~LsWLt~eQk~EI~kMk~~gksk~~v~~KI~efye 51 (134)
T 2xv9_A 5 FHHFTLESSLD--THLKWLSQEQKDELLKMKKDGKAKKELEAKILHYYD 51 (134)
T ss_dssp TSSSCSGGGTT--TTTTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHH--HHHHHCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45666654432 234679999999999999999988888887765543
No 23
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=20.52 E-value=1.1e+02 Score=28.21 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCChhHHhhhh
Q 037162 286 TFISSWNLLVLAASEEEFAQRLKSMESDFSKYPTALTYIR 325 (689)
Q Consensus 286 ~~~~~w~~l~~a~t~~ef~~~~~~l~~~~~~~p~~~~Yl~ 325 (689)
.=+..++.|..+.|+++.++...+|.+.|...|..++.|-
T Consensus 29 ~RL~lYkria~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll 68 (173)
T 2qsr_A 29 HKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLL 68 (173)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCcHHHHHHH
Confidence 3456678899999999999999999999999998777774
Done!