BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037164
(250 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359497206|ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Vitis vinifera]
Length = 494
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 171/287 (59%), Gaps = 38/287 (13%)
Query: 1 MTDKLYIPS-------RLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GV 42
M+DK YIP R+NLI +VHG+EQ E YF+NI K L+ + V
Sbjct: 106 MSDKRYIPLMPRDIALRMNLILKVHGLEQVENYFNNIHKNLKTYQVYIALLNCYALEKSV 165
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE ++Q ++D+GF R + +M + Y GN EK+D LM EMEEK I D+FTL IR
Sbjct: 166 DKAEAIMQRLRDLGFVRTALGYNTLMNVYYRMGNWEKLDILMHEMEEKGIFCDKFTLAIR 225
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
SAYAAAS+I G+D I+ ES+P+++LD+N AV L+ + M+KK E LI
Sbjct: 226 LSAYAAASNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVDKTLVMMKKLEELI 285
Query: 154 ATKRNSSNAFE----------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203
K S+ AF+ +D+L R+W Y + K++NKGYM M+ LLK DD+ A
Sbjct: 286 DAK-GSNVAFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNKGYMAMISSLLKFDDIDAA 344
Query: 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
EK L W S+ L YDF +P+ LIDA+C+ GL EKA++L+N TK G
Sbjct: 345 EKVLEEWESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKGG 391
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 18/75 (24%)
Query: 1 MTDKLYIPS-------RLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GV 42
M+DK YIP R+NLI +VHG+EQ E YF+NI K L+ + V
Sbjct: 27 MSDKRYIPLMPRDIALRMNLILKVHGLEQVENYFNNIHKNLKTYQVYIALLNCYALEKSV 86
Query: 43 GKAEMVVQEMKDMGF 57
KAE ++Q ++D+GF
Sbjct: 87 DKAEAIMQRLRDLGF 101
>gi|449523946|ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 461
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 170/280 (60%), Gaps = 38/280 (13%)
Query: 1 MTDKLYIP-------SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFFG----------V 42
M+DK Y P R+NLI VHG+EQ E YFDN+ S+L R + V
Sbjct: 87 MSDKRYFPLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCV 146
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KA +Q++K+MGFA + IMM L + G E++D+L+ EM+E+ + D+FT IR
Sbjct: 147 DKANAFMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIR 206
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
SAYAAASD G++KI+ ESNP +VLD+N + L+ +++MLKKSEGL+
Sbjct: 207 ISAYAAASDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLL 266
Query: 154 ATKRNSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203
A + AF + KD+++RIW Y + K+FNKG+++M+ LL LDD+KGA
Sbjct: 267 ANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLY-KKEKIFNKGFISMITSLLILDDIKGA 325
Query: 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
E+ + W ++ L YD +P+ L+DA+C+ GL+EKA+ L+N
Sbjct: 326 ERIYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLN 365
>gi|225446335|ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial [Vitis vinifera]
Length = 499
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/266 (41%), Positives = 152/266 (57%), Gaps = 32/266 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +VHG+EQAE YF+ LR +G + KAE ++QEM+DMGF
Sbjct: 109 QLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV 168
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ T+ +M+ L G EK+D LM EMEE I D FT IR +AY A SD+ GM+K+
Sbjct: 169 K-TLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKL 227
Query: 119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+ E++P + D+N L A L A+ MLKKSE I + R+ +E+
Sbjct: 228 LMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFI-SGRSRRFGYEILLTL 286
Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
K ++YRIW Y K FN GY+ M+ LLKLDD+ GAEKT W S N +DF
Sbjct: 287 YATMGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWLSGNKFFDF 346
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHA 245
+P+ LI A+CK GLLEKA+ L++ A
Sbjct: 347 RVPNLLIRAYCKKGLLEKAEQLVSRA 372
>gi|147775992|emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
Length = 499
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/266 (41%), Positives = 151/266 (56%), Gaps = 32/266 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +VHG+EQAE YF+ LR +G + KAE ++QEM+DMGF
Sbjct: 109 QLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV 168
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ T+ +M+ L G EK+D LM EMEE I D FT IR +AY A SD+ GM+K+
Sbjct: 169 K-TLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKL 227
Query: 119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+ E++P + D+N L A L A+ MLKKSE I + R+ +E+
Sbjct: 228 LMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFI-SGRSRRFGYEILLTL 286
Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
K + YRIW Y K FN GY+ M+ LLKLDD+ GAEKT W S N +DF
Sbjct: 287 YATMGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWLSGNKFFDF 346
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHA 245
+P+ LI A+CK GLLEKA+ L++ A
Sbjct: 347 RVPNLLIRAYCKKGLLEKAEQLVSRA 372
>gi|224138182|ref|XP_002322750.1| predicted protein [Populus trichocarpa]
gi|222867380|gb|EEF04511.1| predicted protein [Populus trichocarpa]
Length = 516
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 158/278 (56%), Gaps = 38/278 (13%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTDK Y + RL+LI +VHG+EQ E YF+NI L+ +G V
Sbjct: 104 MTDKRYLALTSRAVAVRLDLISKVHGIEQVENYFNNIPTKLKGLESYGALLNCYAYVKSV 163
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE V+Q M+++GFAR+ + +M+ L Y TGN EK+D LM EMEE I+ D+F IR
Sbjct: 164 EKAEAVMQRMRELGFARKPLVFTVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIR 223
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
S+YAAASD G++K + ES+P +VLD+ A LL A+ MLK+ E LI
Sbjct: 224 LSSYAAASDSEGLEKTLKRIESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLI 283
Query: 154 ATKRNSSNAFEL---------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
+R S+ L K+ + R+W+ + R V N+ ++++ LLK DD++ AE
Sbjct: 284 TGERRSTPYDYLMTQYATTGTKEDVLRVWELH--KRYVGNRKNISVITSLLKFDDLESAE 341
Query: 205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
K W S+ L D +P+ L+DA+ + GLLEKA+ L+
Sbjct: 342 KIFEEWESQKLCDDIIIPNFLVDAYSRKGLLEKAEMLL 379
>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa]
gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 159/287 (55%), Gaps = 37/287 (12%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD Y + +L+LI +VHG+EQA+ F+N + L+ + V
Sbjct: 117 MTDSGYFELASQDVAVQLDLISKVHGIEQAQKLFNNTPQHLKVLKVYSALLNCYAKAKLV 176
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE VVQEMK +GFA + +++ Y TGN +KI++LM EME+ I D+F I+
Sbjct: 177 EKAESVVQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQ 236
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
SAYA+ SDI G++K + ES+P + LD+ L+ A+ ML+KSE L+
Sbjct: 237 LSAYASVSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVGLVDKALEMLEKSERLV 296
Query: 154 ATKRNSSNAFEL---------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
KR + L +++ RIW+ Y + KV+ + Y++++ LLKLDD + AE
Sbjct: 297 TGKRRGTAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYISIITSLLKLDDFENAE 356
Query: 205 KTLRNWTSKNLP-YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
K W +N YD +P+ LIDA+ + GL+EKA++LI+ A +K G
Sbjct: 357 KIFEEWEFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAISKGG 403
>gi|255553771|ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542908|gb|EEF44444.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 153/269 (56%), Gaps = 35/269 (13%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL+LI +VHG+ +AE YF++I R +G +GKAE +Q+MKD+
Sbjct: 110 VAVRLDLISKVHGLVKAEEYFNSIPDTSRDRQVYGALLNCCAHSKLLGKAEATMQKMKDL 169
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF + ++ +M+ L GN EK+D L+ EMEE I+ D+ T IR +A +SDI GM
Sbjct: 170 GFVKNSLSYNVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRLNACVNSSDIEGM 229
Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIA--TKRNSSNAFE 164
+K++ E +P + + F+ L A L+ + MLK+SE LI+ T+R A+E
Sbjct: 230 EKLLMKMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRRF---AYE 286
Query: 165 L----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN 214
K ++YRIW Y + + FN GY+ M+ LLKLDD+ GAE+ W SK
Sbjct: 287 FLLTLYTASGNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAERIFEEWDSKK 346
Query: 215 LPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
+ +D +P+S+++ + + G LEKA++ IN
Sbjct: 347 VLFDIRIPNSMVNVYSRKGHLEKAETYIN 375
>gi|449438086|ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 486
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 154/267 (57%), Gaps = 29/267 (10%)
Query: 6 YIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKD 54
+I +L+LI + G+EQAE YF +I + R +G + KAE ++Q+M++
Sbjct: 106 HIAIQLHLISKARGLEQAEEYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMRE 165
Query: 55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
+GF + + M+ L G EK+D L+ EMEE I ++FT +R +AYAAASDI
Sbjct: 166 VGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAAASDITN 225
Query: 115 MDKIINMTESNPQMVLDFNLL---------AVLLYMAMTMLKKSEGLIATKRNS------ 159
M+K+++ E++P + D+++ A L +++MLKK+E LI K+
Sbjct: 226 MEKLLSKMEADPLVATDWHIYFTVGNGYFKAGLSENSISMLKKAEQLIGDKQKWLAYQYL 285
Query: 160 ---SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
A KD++YR+W Y +K FN GY+ ++ L+KLDD+ GAE+ L+ W S +
Sbjct: 286 MTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEWESGDTS 345
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLIN 243
+DF +P+ +I+++C G ++KA++ I+
Sbjct: 346 FDFKIPNMMINSYCTKGFVDKAEAYIS 372
>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 493
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 148/266 (55%), Gaps = 29/266 (10%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
I L+LI + G+EQAE YF +I + R +G + KAE ++Q+M+++
Sbjct: 107 IAVELHLISKARGLEQAEKYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMREV 166
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF + + M+ L G EK+ L+ EMEE I D+FT IR +AYAAASDI M
Sbjct: 167 GFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAAASDITNM 226
Query: 116 DKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNS------- 159
+K+++ E++P + D++ V L ++ MLKK+E I K+
Sbjct: 227 EKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKWLAYQYLM 286
Query: 160 --SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
A KD++YR+W Y RK FN GY+ ++ L+KLDD+ GAE+ L+ W S + +
Sbjct: 287 TLYAAIGNKDEVYRVWNLYTNLRKRFNSGYLCIISSLMKLDDIDGAERILKEWESGDTSF 346
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLIN 243
DF +P+ +I+++C G ++KA++ IN
Sbjct: 347 DFRIPNMMINSYCMKGFVDKAEAYIN 372
>gi|297803972|ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
lyrata]
gi|297315706|gb|EFH46129.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
lyrata]
Length = 480
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 151/287 (52%), Gaps = 40/287 (13%)
Query: 1 MTDKLYIP-------SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
M+D+++ P +R+NLI V G+ +AE++F+NI K ++ F
Sbjct: 94 MSDRMFFPLSLTDFGTRINLISRVCGLGEAEVFFENIPKDMKGIAVFSSLLSCYAREKSA 153
Query: 43 GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
KA +V+ MK+ G + T CY +MM + Y K+D LMLEME+ ++ DQFTL I
Sbjct: 154 EKAAKLVEAMKEAGVSMDT-RCYNLMMNMYYQMNVHGKLDDLMLEMEQNGVSFDQFTLSI 212
Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGL 152
R SAYAAAS+I G++K I S + +D+ + + L+ A MLKK E
Sbjct: 213 RLSAYAAASNIEGIEKTIEKISSMSETAIDWTIYSAAANAFLKVELIDEATMMLKKCEEF 272
Query: 153 IATKRNSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKG 202
+ + + + AF K+ L R+W + + RKVFN GY M+ LK D++
Sbjct: 273 V-NEDSGNEAFHTLLKLYGETGRKEDLSRVWLRFKEERKVFNSGYKIMISSALKFGDIEL 331
Query: 203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249
EK W S+ L YDF +P+ LI+ +C+ L EKA+ L+ AE +
Sbjct: 332 VEKVFNQWESEKLSYDFRIPNLLINFYCEKDLTEKAELLLKKAEGNR 378
>gi|359485373|ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Vitis vinifera]
Length = 461
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 37/279 (13%)
Query: 1 MTDKLYI---PS----RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD+ Y PS RL+LI VHG QAE YF+NI L+ +G V
Sbjct: 80 MTDRRYFTLTPSDAAIRLDLISMVHGRVQAESYFNNIPNNLKTSSAYGALLSGYVREKSV 139
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE +Q+M++M FA + +++ L TGN KI+AL+ EM+ K+I D FT+
Sbjct: 140 EKAEATMQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNL 199
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG-L 152
AY AASDI M+K +N E +P + +D+N+ +V L+ A+ MLKK E
Sbjct: 200 MVAYVAASDISAMEKFLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNR 259
Query: 153 IATKRNSSNAFEL--------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
+R S+ F L K +LYR+W Y + + + + Y M+ L KLDD++GAE
Sbjct: 260 PHLERLSAFKFLLSLYARTGHKQELYRVWNLYKPSYE-YPEAYSCMITCLTKLDDIEGAE 318
Query: 205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
K + W + YDF + + L+ A+CK L +KA+SL+N
Sbjct: 319 KIFQEWECECTMYDFRVLNRLLSAYCKRCLFDKAESLVN 357
>gi|302143278|emb|CBI21839.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 37/279 (13%)
Query: 1 MTDKLYI---PS----RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD+ Y PS RL+LI VHG QAE YF+NI L+ +G V
Sbjct: 80 MTDRRYFTLTPSDAAIRLDLISMVHGRVQAESYFNNIPNNLKTSSAYGALLSGYVREKSV 139
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE +Q+M++M FA + +++ L TGN KI+AL+ EM+ K+I D FT+
Sbjct: 140 EKAEATMQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNL 199
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG-L 152
AY AASDI M+K +N E +P + +D+N+ +V L+ A+ MLKK E
Sbjct: 200 MVAYVAASDISAMEKFLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNR 259
Query: 153 IATKRNSSNAFEL--------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
+R S+ F L K +LYR+W Y + + + + Y M+ L KLDD++GAE
Sbjct: 260 PHLERLSAFKFLLSLYARTGHKQELYRVWNLYKPSYE-YPEAYSCMITCLTKLDDIEGAE 318
Query: 205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
K + W + YDF + + L+ A+CK L +KA+SL+N
Sbjct: 319 KIFQEWECECTMYDFRVLNRLLSAYCKRCLFDKAESLVN 357
>gi|224121680|ref|XP_002330626.1| predicted protein [Populus trichocarpa]
gi|222872230|gb|EEF09361.1| predicted protein [Populus trichocarpa]
Length = 441
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 149/266 (56%), Gaps = 33/266 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL+LI +VHG+EQAE Y+++I LR +G + KAE +Q+M+++G
Sbjct: 78 RLDLISKVHGLEQAEEYYNSIPDHLRGTQVYGALLNCYAHKRRLEKAEATMQKMRELGLV 137
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ Y ++ + +++ G EK++AL+ EMEEK +N D +T IR AY A S+I M+K+
Sbjct: 138 QTLSYNVMLSLYSHM-GRYEKLEALVKEMEEKGVNSDIYTFNIRLHAYVATSNIEEMEKL 196
Query: 119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIA--TKRNSSNAFEL-- 165
+ E++ + +DF+ L A LL ++ MLK++E L ++A+E+
Sbjct: 197 LMKMETDSLINIDFHTFFAVANGYLKAGLLEKSIVMLKRAEELTVPMVGTTKAHAYEMLL 256
Query: 166 --------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
KD +YR+W Y T ++FN Y+ M+ L++L D+ GAE W S+ Y
Sbjct: 257 TLYGSAGNKDGVYRVWNSYKNTGRIFNSTYICMINSLMRLGDIDGAEWISEEWVSRKTLY 316
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLIN 243
D +P+++I A+ + GL +KA+ +N
Sbjct: 317 DIRIPNTMIRAYSRKGLWKKAEEYVN 342
>gi|224121664|ref|XP_002330622.1| predicted protein [Populus trichocarpa]
gi|222872226|gb|EEF09357.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 143/267 (53%), Gaps = 32/267 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL LI V G+E+AE YF+ +S L+ +G V KAE V+QEM++ G
Sbjct: 17 RLGLIHRVRGLEEAENYFNKLSVKLKTKYTYGAILNGCVREKSVQKAEAVMQEMREGGMT 76
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ I++IL TG+ +KI LM EME I D++TL +A AASDI G+++I
Sbjct: 77 TSSFPYNILIILYSQTGDFDKIPPLMKEMERNGIAEDKYTLRNLIAASVAASDISGVERI 136
Query: 119 INMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+ + E NP++ LD+ L A+ + A+TML+K E +A ++ + F
Sbjct: 137 LKLMEENPELGLDWKLYAMAADAYLKIGSIETALTMLEKLEKWMAFRKKKA-VFNFLLSL 195
Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYD 218
KD+LYRIW Y + + + Y M+ L KLDD++GAEK W S+ YD
Sbjct: 196 YAKTGNKDELYRIWNLYKPSSESMDTSYCCMIDSLTKLDDIEGAEKIFEEWESQCTTTYD 255
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHA 245
F + + L+ A+C GL EKA++ I A
Sbjct: 256 FRVLNGLLVAYCNRGLFEKAEAAIEKA 282
>gi|449438486|ref|XP_004137019.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
gi|449479168|ref|XP_004155524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 500
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 153/284 (53%), Gaps = 42/284 (14%)
Query: 1 MTDKLYI---PS----RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD+ Y+ PS RL+LI VHG+E AE YF++IS L+ +G +
Sbjct: 94 MTDRRYLSLSPSDAAVRLDLIHSVHGLEHAENYFNSISIRLKTSNVYGALLGCYVREKSL 153
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE ++QEM+ MG A + +++ L G +KID L+ EM+ K I D +++
Sbjct: 154 EKAEAIMQEMRKMGIATTSFAYNVLINLYAQIGQHDKIDLLIEEMKTKGIPQDIYSIRNL 213
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
+AY A +DI GM+KI+ E + ++ D+ + ++ L A++MLKK+E +
Sbjct: 214 CAAYVAKADISGMEKILKRIEEDSELKADWTIYSIAANGYLTAGLETEALSMLKKTEEKV 273
Query: 154 ATKRNSSNAFELK------------DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVK 201
R ++N F K +++YR+W + K Y M+ L KLDD++
Sbjct: 274 ---RPNTNKFAFKFLLSLYERTGHKNEVYRVWNTFKPLTKETCVPYALMITSLAKLDDIE 330
Query: 202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
GAE+ + W SK YDF + + L+ A+C+ GLL+KA+S++N A
Sbjct: 331 GAERIFQEWESKCTVYDFRVLNRLLVAYCRKGLLDKAESVVNQA 374
>gi|297832672|ref|XP_002884218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330058|gb|EFH60477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 491
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 144/264 (54%), Gaps = 31/264 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL+LI +V G+ +AE +F+ I R +G + KAE V QEMK++GF
Sbjct: 113 RLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFL 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ + +M+ L TG ++ L+ EME+ ++ D FT+ R AY+A SD+ GM+K
Sbjct: 173 KGCLPYNVMLNLYVRTGKYTMVEKLLREMEDGTVKPDIFTVNTRLHAYSAVSDVEGMEKF 232
Query: 119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+ E++ + LD+ + A L A+ ML+KSE ++ R +A+E+
Sbjct: 233 LMRCEADTGLHLDWRTYADTANGYIKAGLTEKAIEMLRKSEQMV-NPRKRKHAYEVLMSF 291
Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
K+++YR+W Y + +N GY++++ LLK+DD++ EK + W + + +D
Sbjct: 292 YGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDI 351
Query: 220 GLPSSLIDAHCKNGLLEKAQSLIN 243
+P LI +CK G++EKA+ ++N
Sbjct: 352 RIPHLLITGYCKKGMMEKAEEVVN 375
>gi|42570837|ref|NP_973492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|119935915|gb|ABM06033.1| At2g20710 [Arabidopsis thaliana]
gi|330251966|gb|AEC07060.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 395
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 147/268 (54%), Gaps = 33/268 (12%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL+LI +V G+ +AE +F+ I R +G + KAE V QEMK++
Sbjct: 14 VAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKEL 73
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF + + +M+ L TG ++ L+ EME++++ D FT+ R AY+ SD+ GM
Sbjct: 74 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 133
Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFEL 165
+K + E++ + LD+ + A L A+ ML+KSE ++ A KR +A+E+
Sbjct: 134 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK--HAYEV 191
Query: 166 ----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
K+++YR+W Y + +N GY++++ LLK+DD++ EK + W + +
Sbjct: 192 LMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHS 251
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
+D +P LI +CK G++EKA+ ++N
Sbjct: 252 LFDIRIPHLLITGYCKKGMMEKAEEVVN 279
>gi|15225409|ref|NP_179663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206559|sp|Q9SKU6.1|PP166_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g20710, mitochondrial; Flags: Precursor
gi|4454477|gb|AAD20924.1| hypothetical protein [Arabidopsis thaliana]
gi|51315392|gb|AAT99801.1| At2g20710 [Arabidopsis thaliana]
gi|330251965|gb|AEC07059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 490
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 147/268 (54%), Gaps = 33/268 (12%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL+LI +V G+ +AE +F+ I R +G + KAE V QEMK++
Sbjct: 109 VAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKEL 168
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF + + +M+ L TG ++ L+ EME++++ D FT+ R AY+ SD+ GM
Sbjct: 169 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 228
Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFEL 165
+K + E++ + LD+ + A L A+ ML+KSE ++ A KR +A+E+
Sbjct: 229 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK--HAYEV 286
Query: 166 ----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
K+++YR+W Y + +N GY++++ LLK+DD++ EK + W + +
Sbjct: 287 LMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHS 346
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
+D +P LI +CK G++EKA+ ++N
Sbjct: 347 LFDIRIPHLLITGYCKKGMMEKAEEVVN 374
>gi|224121672|ref|XP_002330624.1| predicted protein [Populus trichocarpa]
gi|222872228|gb|EEF09359.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 138/265 (52%), Gaps = 29/265 (10%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL+LI +VHG+EQA YF+++ + LR +G + +AE +++M++M
Sbjct: 104 VAVRLDLISKVHGLEQAVTYFNSVPESLRGLEVYGALLNCYAHYKHLEEAEATMRKMREM 163
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF R + +M+ L Y G EKI LM EME+ I T I +AY A S+I +
Sbjct: 164 GFVRNVLSYNVMLNLYYQMGKYEKIQVLMQEMEKWGICFSNITYKILLNAYVATSNIEEI 223
Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL- 165
KI+ E++P + +D+ L A L+ +TML +SE LI+ K L
Sbjct: 224 KKILMKMEADPLVSIDWYAYVVAANGYLKAGLIDKTLTMLWRSEQLISGKSARFACETLL 283
Query: 166 --------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
K+Q+YR+W Y + N Y+ M+ LLKLDDV GAE+ W S +
Sbjct: 284 SLYTAVGNKEQVYRVWNLYKTKGRSLNSSYLCMINSLLKLDDVDGAERIWEEWVSIVKFF 343
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLI 242
D +P+ ++ A+ K GL EKA++ +
Sbjct: 344 DIRIPNVMVSAYSKKGLWEKAEAFV 368
>gi|255553773|ref|XP_002517927.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542909|gb|EEF44445.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 140/271 (51%), Gaps = 38/271 (14%)
Query: 1 MTDKLYI---PS----RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD Y PS RL LI+ V+G AE+YF+ IS L+ +G V
Sbjct: 106 MTDCRYFSLSPSDVAVRLELIYRVYGSAHAEMYFEKISDKLKSGNVYGALLSGYVRENSV 165
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE V+QEM++ G A + IM+ L G EKID L EME I D++T+
Sbjct: 166 QKAEAVLQEMREKGIATSSFPYNIMINLYAQNGAFEKIDILKEEMERNGIPQDKYTMRNL 225
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
+AY AASDI GM++I+N E++PQ+ + +V L+ A+ ML+K E +
Sbjct: 226 MAAYVAASDISGMERILNQLETHPQLGHGWQAYSVAASGYLKVGLIEKALKMLRKMEETM 285
Query: 154 ATKRNSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203
+ +S AF KD+LYR+W Y +V + M+ L K+DD++GA
Sbjct: 286 PIGKKTS-AFNYLLTLYAKTGRKDELYRVWNSYKPLAEVKETQFCCMISSLEKVDDIEGA 344
Query: 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL 234
E+ W S+ + YDF + + L+ A+C+ GL
Sbjct: 345 ERIFEEWESQCMMYDFRVLNKLLLAYCRKGL 375
>gi|302143279|emb|CBI21840.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 128/247 (51%), Gaps = 47/247 (19%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +VHG+EQAE YF+ LR +G + KAE ++QEM+DMGF
Sbjct: 109 QLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV 168
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ T+ +M+ L G EK+D LM EMEE I D FT IR +AY A SD+ GM+K+
Sbjct: 169 K-TLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKL 227
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQ 178
+ E++P + D+N V ++N + LK L
Sbjct: 228 LMKLETDPAVNSDWNAYIV---------------------AANGY-LKADLK-------- 257
Query: 179 TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA 238
K + LLKLDD+ GAEKT W S N +DF +P+ LI A+CK GLLEKA
Sbjct: 258 -----EKAVEMLKNSLLKLDDMDGAEKTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKA 312
Query: 239 QSLINHA 245
+ L++ A
Sbjct: 313 EQLVSRA 319
>gi|449438490|ref|XP_004137021.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 334
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 123/213 (57%), Gaps = 18/213 (8%)
Query: 49 VQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA 108
+Q+M+++GF + + M+ L G EK+ L+ EMEE I D+FT IR +AYAA
Sbjct: 1 MQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAA 60
Query: 109 ASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNS 159
ASDI M+K+++ E++P + D++ V L ++ MLKK+E I K+
Sbjct: 61 ASDITNMEKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKW 120
Query: 160 ---------SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW 210
A KD++YR+W Y +K FN GY+ ++ L+KLDD+ GAE+ L+ W
Sbjct: 121 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEW 180
Query: 211 TSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
S + +DF +P+ +I+++C G ++KA++ IN
Sbjct: 181 ESGDTSFDFRIPNMMINSYCTKGFVDKAEAYIN 213
>gi|388517969|gb|AFK47046.1| unknown [Lotus japonicus]
Length = 496
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 144/268 (53%), Gaps = 34/268 (12%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
I R++LI +VHG+++AE +F I R + + +AE +++++K++
Sbjct: 105 IAKRIHLISKVHGLKKAEDFFQGIPDDKRGFKIYASLLSCYAEHKSLEEAEAIMKKIKEL 164
Query: 56 GFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAASDIH 113
T+ CY I++ L G EK+D LM EM+E + NG FT IR +AY AA D+
Sbjct: 165 RPMHLTV-CYNILLKLYAQKGKYEKLDRLMQEMKENDLCNGATFT--IRLNAYVAAKDVE 221
Query: 114 GMDKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKR------- 157
GM+K++ E++P +D+ L A + A+ LKKSE + K+
Sbjct: 222 GMEKLLMQMEADPMATVDWYTYSTAANGYLKAGNVEKALAALKKSEQSVKGKKLRLAYES 281
Query: 158 --NSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
++ A KD++YR+W + +N Y+ M+ LLKLDD GAEK L W S++
Sbjct: 282 LQSTYAAIGNKDEVYRLWNRIKNLQNCWNSSYICMLSSLLKLDDFDGAEKILAEWESEHK 341
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
+D +P+ +I A+CK GLL+KA++ I
Sbjct: 342 NFDTRIPNLMITAYCKRGLLDKAEAYIQ 369
>gi|255581582|ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528792|gb|EEF30799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 300
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 27/187 (14%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLR---------QCLFFG--V 42
M+DK Y + RL+L+ +V G+EQAE YF+N+ + L+ C + V
Sbjct: 107 MSDKRYFALTSRDVAIRLDLMSKVLGIEQAEKYFENVPQKLKVLEVYNALLNCYAYAKSV 166
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE V+Q M+D+GFA +T+ +M+ L+Y TGN +K++ALMLEMEE I D+FTLGI+
Sbjct: 167 DKAEAVMQNMRDLGFAGKTLTYNVMLNLHYQTGNFKKLEALMLEMEENGIAYDRFTLGIQ 226
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
SAYAA DI M+KI++ ES+ +V D+ A+ L+ A+ MLKKSEGLI
Sbjct: 227 LSAYAAICDIQRMEKIMSRMESDANVVTDWCNYAIVANGYRKAGLMDKALEMLKKSEGLI 286
Query: 154 ATKRNSS 160
K+ SS
Sbjct: 287 TGKKRSS 293
>gi|147766620|emb|CAN73943.1| hypothetical protein VITISV_032243 [Vitis vinifera]
Length = 448
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 142/270 (52%), Gaps = 32/270 (11%)
Query: 1 MTDKLYI---PS----RLNLIFEVHGVEQA-EIYFDNISKLLRQCLFFGVGKAEMVVQEM 52
MTD+ Y PS RL+LI V + Y +S +R+ V KAE +Q+M
Sbjct: 80 MTDRRYFTLTPSDAAIRLDLISMVPWTXAGXDAYGALLSGYVRE---KSVEKAEATMQKM 136
Query: 53 KDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDI 112
++M FA + +++ L TGN KI+AL+ EM+ K+I D FT+ AY AASDI
Sbjct: 137 REMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQXKAIPCDAFTVXNLMVAYVAASDI 196
Query: 113 HGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAF 163
M+K +N E +P + +D+N+ +V L+ A+ MLKK E S AF
Sbjct: 197 SAMEKXLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHLERXS-AF 255
Query: 164 EL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
+ K +LYR+W Y + + + + Y M+ L KLDD++GAEK + W +
Sbjct: 256 KXLLSLYARTXHKQELYRVWNLYKPSYE-YPEAYSCMITCLTKLDDIEGAEKIFQEWECE 314
Query: 214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
YDF + + L+ A+CK L +KA+SL+N
Sbjct: 315 CTMYDFRVLNRLLSAYCKRCLFDKAESLVN 344
>gi|255553777|ref|XP_002517929.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542911|gb|EEF44447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 31/256 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLR----QCLFFG-------VGKAEMVVQEMKDMGFA 58
RL L+ ++G AE YF+ + + C V KAE +++EM+ G A
Sbjct: 82 RLELVHRIYGSAHAEKYFEKLPDKFKCREVYCALLSGYVQESSVRKAEAIMEEMRAKGMA 141
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+++ L G+ EKI+ L+ EME + +T+ +AY AAS+I GM++I
Sbjct: 142 NSCFPYNLLINLYPKNGDYEKINMLIQEMETNGVVRGAYTMSNLMAAYVAASNISGMERI 201
Query: 119 INMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+N E +PQ+ D+ + +V L+ A+TML+K E ++ ++ +S AF++
Sbjct: 202 LNQIEKDPQLGNDWRVYSVAASGYLKFGLIEKALTMLRKLEDVMPLEKKTS-AFDILVTL 260
Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
+D+LY +W Y ++ MTM+ L KLDD+KGAEK R W S+ + YDF
Sbjct: 261 YGKTGKRDELYLVWNTYKPLIELKETSVMTMISSLSKLDDIKGAEKIFREWESQCMMYDF 320
Query: 220 GLPSSLIDAHCKNGLL 235
+ ++L+ A+C+ GLL
Sbjct: 321 RVLNTLLFAYCRKGLL 336
>gi|356547012|ref|XP_003541912.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20710, mitochondrial-like [Glycine max]
Length = 482
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 138/275 (50%), Gaps = 50/275 (18%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNI----------SKLLRQCL--FFGVGKAEMVVQEMKD 54
I ++NLI +VHG+EQAE YF I + LLR C V +AE V++ +K+
Sbjct: 93 IAKQINLISKVHGLEQAERYFRGIPDDKIEFKIYAALLR-CYAEHKSVEEAEAVMKXIKE 151
Query: 55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAASDIH 113
+ T C +M+ L G EK+D LM EM+EK I N +T IR +AY +DI
Sbjct: 152 LHPVNITPCCNMMLELYAKKGKYEKLDRLMQEMKEKDICNASTYT--IRLNAYVVVTDIK 209
Query: 114 GMDKIINMTESNPQMVLDFNLLAVLLYMAMT----------------MLKKSEGLIATKR 157
GM+K++ E++P +D+ Y MT MLKKSE L A
Sbjct: 210 GMEKLLMQMEADPVATVDW-------YTYMTAANGYRRVHNFEKVAEMLKKSEHL-ARGN 261
Query: 158 NSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTL 207
AFE KD++YR+W +K N Y+ M+ L KLD++ GAEK L
Sbjct: 262 TRRLAFESIQTMYAIIGNKDEVYRLWNMCTSLKKPNNSSYIRMLSSLAKLDEIDGAEKIL 321
Query: 208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
W SK +D +P+ +I A+CK G +KA++ I
Sbjct: 322 EEWESKYANFDVRIPNLMISAYCKWGQFDKAEAYI 356
>gi|242039187|ref|XP_002466988.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
gi|241920842|gb|EER93986.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
Length = 510
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 147/271 (54%), Gaps = 33/271 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL+LI +VHG+E+A YF + K LR +G V KAE +M++MG
Sbjct: 117 RLDLISKVHGLEKAVEYFGMVPKRLRMPQCYGSLLKCYVEAKAVDKAEEHFAKMQEMGM- 175
Query: 59 RRTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
++ Y Y M+ YL TG E++ A+ +MEEK + D F++ +AY AA D+ G+ K
Sbjct: 176 -KSSYTYTSMMKLYLETGQLERVHAMFQDMEEKGVKPDTFSVESMLAAYIAAEDVEGVGK 234
Query: 118 IINMTESNPQMV-LDFNLLAVLLYM-------AMTMLKKSEGLIATKRNS-SNAFELK-- 166
+++ + ++V LA L+M A+ L ++E I+ K + + AF LK
Sbjct: 235 VLDKANPHEKLVKWHGQALAASLFMKSGMQVRAVMALLEAERRISPKSSRIAYAFLLKTY 294
Query: 167 ------DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DF 219
++ RIW Y N Y++ + LLK++D+ GAE TL+ W + +L Y DF
Sbjct: 295 TDLGMYPEVGRIWSVYKSKVPPSNTMYLSRISALLKMNDIDGAEATLKEWETVSLRYHDF 354
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
L + ++DA+C+ GL+EKA +L++ A KKG
Sbjct: 355 RLINLMVDAYCREGLVEKAVALVDDA-IKKG 384
>gi|226533322|ref|NP_001142217.1| uncharacterized protein LOC100274385 [Zea mays]
gi|194707648|gb|ACF87908.1| unknown [Zea mays]
gi|414870857|tpg|DAA49414.1| TPA: hypothetical protein ZEAMMB73_857299 [Zea mays]
Length = 472
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 38/286 (13%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD+ + + RL+LI +VHG+E+A YF + K LR+ +G V
Sbjct: 53 MTDRRHLHLSVGDVAYRLDLISKVHGLEKAVEYFGMVPKQLRKPQCYGSLLKCYVEAKAV 112
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE +M++MG Y + MM L TG E++ A+ +MEEK + D F++
Sbjct: 113 DKAEEHFAKMQEMGMTSSYAYTW-MMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEAM 171
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMV-LDFNLLAVLLYM-------AMTMLKKSEGLIA 154
+AY AA D+ G+ K+++ + ++V + A L+M A+ L ++E I+
Sbjct: 172 LAAYIAAEDVQGVGKVLDKANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRIS 231
Query: 155 TKRNS-SNAFELKD--------QLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205
K + + AF LK + RIW Y N YM+ + LL+ +D+ GAE
Sbjct: 232 PKSSRIAYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTMYMSRLSALLRTNDIDGAEA 291
Query: 206 TLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
TL+ W + L Y DF L + ++DA+C+ GL+EKA +L++ A KKG
Sbjct: 292 TLKEWETVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGA-IKKG 336
>gi|195613552|gb|ACG28606.1| tetratricopeptide-like helical [Zea mays]
gi|414870858|tpg|DAA49415.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 517
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 38/286 (13%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD+ + + RL+LI +VHG+E+A YF + K LR+ +G V
Sbjct: 98 MTDRRHLHLSVGDVAYRLDLISKVHGLEKAVEYFGMVPKQLRKPQCYGSLLKCYVEAKAV 157
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE +M++MG Y + MM L TG E++ A+ +MEEK + D F++
Sbjct: 158 DKAEEHFAKMQEMGMTSSYAYTW-MMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEAM 216
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMV-LDFNLLAVLLYM-------AMTMLKKSEGLIA 154
+AY AA D+ G+ K+++ + ++V + A L+M A+ L ++E I+
Sbjct: 217 LAAYIAAEDVQGVGKVLDKANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRIS 276
Query: 155 TKRNS-SNAFELKD--------QLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205
K + + AF LK + RIW Y N YM+ + LL+ +D+ GAE
Sbjct: 277 PKSSRIAYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTMYMSRLSALLRTNDIDGAEA 336
Query: 206 TLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
TL+ W + L Y DF L + ++DA+C+ GL+EKA +L++ A KKG
Sbjct: 337 TLKEWETVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGA-IKKG 381
>gi|356542147|ref|XP_003539532.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Glycine max]
Length = 483
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 143/267 (53%), Gaps = 35/267 (13%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNI----------SKLLRQCL--FFGVGKAEMVVQEMKD 54
I ++NLI +V G+EQAE YF I + LLR C V +AE V++++K+
Sbjct: 93 IAKQINLISKVRGLEQAEKYFRGIPDAKIEFKIYAALLR-CYAEHKSVEEAEAVLKKIKE 151
Query: 55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAASDIH 113
+ T C +M+ L G EK+D LM EM+EK I N +T IR +AY A+DI
Sbjct: 152 LHPVNITACCNMMLELYAKKGKYEKLDRLMQEMKEKDICNAGTYT--IRLNAYVIATDIK 209
Query: 114 GMDKIINMTESNPQMVLDFN--LLAVLLYMAM-------TMLKKSEGLI--ATKRNSSNA 162
GM+K++ E +P +D+ + A Y + MLKKSE + TKR + +
Sbjct: 210 GMEKLLMQMEVDPMATVDWYTYMTAANGYRKVHNFEKVAAMLKKSEHVARGKTKRLAYES 269
Query: 163 FEL-------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
+ KD+++R+W +K NK Y+ M+ L+KLDD+ GAEK L W S +
Sbjct: 270 IQTMYAIIGNKDEVHRLWNMCTSPKKP-NKSYIRMLSSLVKLDDIDGAEKILEEWESVHE 328
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLI 242
+D +P+ +I A+CK G +KA++ I
Sbjct: 329 NFDVRIPNLMISAYCKWGQFDKAEAYI 355
>gi|357140786|ref|XP_003571944.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Brachypodium distachyon]
Length = 497
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 142/285 (49%), Gaps = 40/285 (14%)
Query: 1 MTDKLYIP-------SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MTD+ Y P RL LI +VHG++ A YF +SK +++ +G V
Sbjct: 94 MTDRRYFPLKPGDVAYRLELISKVHGLKSAVEYFGGLSKEIKKSQCYGSLLKCYAEAKFV 153
Query: 43 GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
+AE EM++MG + Y Y +MM L + TG EK+ + MEE I D FT+ I
Sbjct: 154 EEAEKFFGEMQEMGMM--SSYPYNVMMKLYWETGQVEKVRTMYRAMEESGIKPDLFTIDI 211
Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMV--LDFNLLAV------LLYMAMTMLKKSEGLI 153
+ Y A+ D+ G+++++ + +V + ++A L A+ L++SE I
Sbjct: 212 LLTVYKASGDLEGIEEVLEKAKPRENLVGWHSYAIVASAFMKAGLQGKALQALQESEKRI 271
Query: 154 ATKRNSSNAFE----------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203
K N A+ ++ ++ RIW Y N YM + LLK++D A
Sbjct: 272 DPK-NGRVAYGFLLSMCADSGMRSEVDRIWDVYKSKVPTCNSMYMCRISALLKMNDTDEA 330
Query: 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
EK R W S+ + +DF L + L++ +C GL+EKA++L++ A TK
Sbjct: 331 EKAFREWESRFVHHDFRLINLLLNGYCAEGLMEKAEALVDEAITK 375
>gi|224077120|ref|XP_002305141.1| predicted protein [Populus trichocarpa]
gi|222848105|gb|EEE85652.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 142/279 (50%), Gaps = 34/279 (12%)
Query: 5 LYIPS----RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVV 49
++ PS +L+LI VHG AE YF+N+ + +G K+ + +
Sbjct: 94 IFSPSEHAVQLDLIGRVHGFVSAENYFNNLRDQDKNEKTYGALLNCYVRQRETDKSILHL 153
Query: 50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
Q+MK+MGFA+ ++ +M L G EK+ ++ EM+E ++ D F+ + +++ A
Sbjct: 154 QKMKEMGFAKSSLTYNDIMCLYTNVGQHEKVPQVLNEMKENNVLPDNFSYRLCINSFGAR 213
Query: 110 SDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSS 160
D+ GM+KI+N E P +V+D+N AV L A+ LKKSE + K +
Sbjct: 214 DDLEGMEKILNEMEHQPDIVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARLDKKDGTG 273
Query: 161 NAFEL--------KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211
+ K ++ R+W + NK Y+ MM LLKL + + AEK L+ W
Sbjct: 274 YNHLISLYAKLGNKTEVLRLWDLEKSACERHINKDYIIMMESLLKLSEFEEAEKMLKEWE 333
Query: 212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
S YD +P++LI + + GL EKA++L+ + T+KG
Sbjct: 334 SSGNFYDVRVPNTLIIGYSRKGLCEKAKALLENL-TEKG 371
>gi|224125490|ref|XP_002329818.1| predicted protein [Populus trichocarpa]
gi|222870880|gb|EEF08011.1| predicted protein [Populus trichocarpa]
Length = 494
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 34/279 (12%)
Query: 5 LYIPSR----LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVV 49
++ PS+ L+LI VHG AE YF+N+ + +G K+ +
Sbjct: 94 IFSPSQHAVQLDLIGRVHGFVSAENYFNNLRDQDKNEKTYGALLNCYVQKRETDKSISHL 153
Query: 50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
Q+MK+MGFA+ ++ +M L G EK+ ++ EM+E +++ D F+ + ++Y A
Sbjct: 154 QKMKEMGFAKSSLSYNDIMCLYTNVGQHEKVPQVLNEMKENNVSPDNFSYRLCMNSYGAR 213
Query: 110 SDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSS 160
D+ GM+K++N E P +V+D+N AV L A+ LKKSE + K +
Sbjct: 214 GDLEGMEKMLNEMEHQPDIVVDWNSYAVAASSYIKGGLTDKAIDSLKKSETRLDKKDGTG 273
Query: 161 --------NAFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211
K ++ R+W T + NK Y+ +M L+KLD+ + EK L+ W
Sbjct: 274 YNHLISLYATLGEKTEVLRLWDLEKSTCERPINKDYINIMASLVKLDEFEEVEKVLKEWE 333
Query: 212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ YD +P++LI + GL EKA++L+ + T+KG
Sbjct: 334 ASGNFYDVRVPNTLIIGYSGKGLYEKAKALLENL-TEKG 371
>gi|255573349|ref|XP_002527601.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533018|gb|EEF34782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 136/261 (52%), Gaps = 28/261 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI V G+E AE YF N+ R +G V K+ +Q+MK++GFA
Sbjct: 109 QLDLIGRVRGLESAESYFQNLVNQDRNDKTYGALLNCYVREGLVDKSLYHMQKMKELGFA 168
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L TG EK+ ++ EM+E I D F+ I S+ AA SD+ G+++I
Sbjct: 169 SSPLNYNDLMCLYTRTGQLEKVTDVLSEMKENGITPDLFSYRICMSSCAARSDLKGVEEI 228
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN----------------A 162
+ E+ + +D+ + + + + K + LI K+ +
Sbjct: 229 LEEMENQSHISIDWVTYSTVASIYVKASLKEKALIYLKKCEQKVNRDALGYNHLISLNAS 288
Query: 163 FELKDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+KD++ R+W + +K N+ Y+TM+G L+KL++++ A+K L+ W S YDF +
Sbjct: 289 LGIKDEVMRLWGLVKTKCKKQVNRDYITMLGALVKLEELEEADKLLQEWESSCQCYDFRV 348
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P+ L+ +C+ GL+EKA++++
Sbjct: 349 PNVLLIGYCQQGLIEKAEAML 369
>gi|115482784|ref|NP_001064985.1| Os10g0501300 [Oryza sativa Japonica Group]
gi|22165054|gb|AAM93671.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432901|gb|AAP54477.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113639594|dbj|BAF26899.1| Os10g0501300 [Oryza sativa Japonica Group]
Length = 513
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 31/268 (11%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL LI +VHG+++A YFD + LR+ +G V KAE + + M+ M
Sbjct: 121 VAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYAEAERVEKAEELFENMRGM 180
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
G A Y MM L G E++D++ MEE I D FT+ SAYA D+ +
Sbjct: 181 GMANSYAY-NAMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDNLVSAYADVEDVEAI 239
Query: 116 DKIINMTESNPQMVLDFNLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAF----- 163
+K++ N M + ++M A+ ++SE I +++ A+
Sbjct: 240 EKVLEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRITARKDGRVAYGFLLT 299
Query: 164 -----ELKDQLYRIWKHYGQ--TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++ ++ RIW Y N YM + +LLK++D+ GAEK W SK++
Sbjct: 300 MYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAYEEWESKHVY 359
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINH 244
+D L + L+ A+CK GL+EKA++L++
Sbjct: 360 HDSRLINILLTAYCKEGLMEKAEALVDQ 387
>gi|125575304|gb|EAZ16588.1| hypothetical protein OsJ_32060 [Oryza sativa Japonica Group]
Length = 475
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 31/268 (11%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL LI +VHG+++A YFD + LR+ +G V KAE + + M+ M
Sbjct: 83 VAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYAEAERVEKAEELFENMRGM 142
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
G A Y MM L G E++D++ MEE I D FT+ SAYA D+ +
Sbjct: 143 GMANSYAYN-AMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDNLVSAYADVEDVEAI 201
Query: 116 DKIINMTESNPQMVLDFNLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAF----- 163
+K++ N M + ++M A+ ++SE I +++ A+
Sbjct: 202 EKVLEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRITARKDGRVAYGFLLT 261
Query: 164 -----ELKDQLYRIWKHYGQ--TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++ ++ RIW Y N YM + +LLK++D+ GAEK W SK++
Sbjct: 262 MYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAYEEWESKHVY 321
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINH 244
+D L + L+ A+CK GL+EKA++L++
Sbjct: 322 HDSRLINILLTAYCKEGLMEKAEALVDQ 349
>gi|356555227|ref|XP_003545936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Glycine max]
Length = 486
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 29/268 (10%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI +VHG AE YFD + + +G KA +Q+MKD+GFA
Sbjct: 96 LDLIGKVHGFSSAETYFDALKDQHKTNKTYGALLNCYVRQRQTDKALSHLQKMKDLGFAS 155
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M L G EK+ ++ EM++ + D F+ I ++Y SD G+++++
Sbjct: 156 SPLTYNDIMCLYTNIGQHEKVPDVLREMKQNQVLPDNFSYRICINSYGVRSDFGGVERVL 215
Query: 120 NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSS--------NA 162
E+ P +V+D+N ++ L A+ L+KSE + K
Sbjct: 216 KEMETQPNIVMDWNTYSIAANFYIKAGLTRDAVCALRKSEERLDNKDGQGYNHLISLYAQ 275
Query: 163 FELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
LK+++ RIW ++ N+ + T++ L+KL ++ AEK L+ W S + YDFG+
Sbjct: 276 LGLKNEVMRIWDLEKNACKRCINRDFTTLLESLVKLGELDEAEKILKEWESSDNCYDFGI 335
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETKK 249
PS +I + + GL EKA +++ + K+
Sbjct: 336 PSIVIIGYSQKGLHEKALAMLEELQNKE 363
>gi|225461407|ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial [Vitis vinifera]
Length = 504
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 28/261 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +V G+E AE YF+N+S + +G + K+ +Q+MK++GFA
Sbjct: 111 QLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKSLSHLQKMKELGFA 170
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L T EKI ++ EM+E I+ D F+ + ++Y A SD++ M+KI
Sbjct: 171 STPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARSDLNSMEKI 230
Query: 119 INMTESNPQ---------MVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN-------A 162
+ ES MV +F + A L A+ LKK+E + N +
Sbjct: 231 LEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPLGYNHLISLYAS 290
Query: 163 FELKDQLYRIW-KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W + ++K+ N+ Y+TM+G L+KL +++ E L+ W S YDF +
Sbjct: 291 LGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWESSGNCYDFRV 350
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P++L+ C+ GL+EKA+S++
Sbjct: 351 PNTLLIGFCQKGLIEKAESML 371
>gi|302143027|emb|CBI20322.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 28/261 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +V G+E AE YF+N+S + +G + K+ +Q+MK++GFA
Sbjct: 111 QLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKSLSHLQKMKELGFA 170
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L T EKI ++ EM+E I+ D F+ + ++Y A SD++ M+KI
Sbjct: 171 STPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARSDLNSMEKI 230
Query: 119 INMTESNPQ---------MVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN-------A 162
+ ES MV +F + A L A+ LKK+E + N +
Sbjct: 231 LEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPLGYNHLISLYAS 290
Query: 163 FELKDQLYRIW-KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W + ++K+ N+ Y+TM+G L+KL +++ E L+ W S YDF +
Sbjct: 291 LGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWESSGNCYDFRV 350
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P++L+ C+ GL+EKA+S++
Sbjct: 351 PNTLLIGFCQKGLIEKAESML 371
>gi|357146877|ref|XP_003574143.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Brachypodium distachyon]
Length = 511
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 29/262 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI +VHGV AE YF+ ++ + +G V K+ Q+MK++GF
Sbjct: 133 LDLIGQVHGVGAAEAYFNKLADKDKTEKPYGALLNCYTRELLVDKSLAHFQKMKELGFVF 192
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EK+ +++ EM+ I D F+ I ++Y A +D GM+ +
Sbjct: 193 SSLPYNNLMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGARADFFGMENTL 252
Query: 120 NMTESNPQMVLDFNLLAVLL--YM-------AMTMLKKSEGLIATKRNSS--------NA 162
E PQ+V+D+N AVL Y+ A++ L+K+E I K + +
Sbjct: 253 EEMECEPQIVVDWNTYAVLANNYIKGNLRDKAISALQKAEAKIDIKDSDTYNHLMSLYGQ 312
Query: 163 FELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W ++ NK Y TM+ +LLKLD+++ AE L+ W S +DF +
Sbjct: 313 LGDKSEVKRLWALQMSNCKRHINKDYTTMLAMLLKLDEIEEAEALLKEWESSENAFDFHV 372
Query: 222 PSSLIDAHCKNGLLEKAQSLIN 243
P+ L+ + + LL+KA++L++
Sbjct: 373 PNVLLTGYRQKDLLDKAEALLD 394
>gi|147807263|emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
Length = 506
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 31/263 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI V G AE YF+++ + +G K+ +Q+MK+MGFA
Sbjct: 113 QLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQTDKSLSHLQKMKEMGFA 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L G EK+ ++ EM++ + D F+ I ++YAA SDI GM+K+
Sbjct: 173 SSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSHVYPDNFSYRICINSYAAQSDIQGMEKV 232
Query: 119 INMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+ E P +V+D+N AV L A+ LKKSE + KR+ L
Sbjct: 233 LKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL-DKRDGLGYNHLISLY 291
Query: 166 -----KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
K ++ R+W ++ N+ Y+TM+ L++L +++ AEK LR W S YDF
Sbjct: 292 ASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLREWESSGNCYDF 351
Query: 220 GLPSSLIDAHCKNGLLEKAQSLI 242
+P+ +I + + GL EKA++++
Sbjct: 352 RVPNIVIIGYSEKGLFEKAEAML 374
>gi|125532539|gb|EAY79104.1| hypothetical protein OsI_34210 [Oryza sativa Indica Group]
Length = 513
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 31/268 (11%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL LI +VHG+++A YFD + LR+ +G V KAE + + M+ M
Sbjct: 121 VAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYTEAERVEKAEELFENMRGM 180
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
G A Y MM L G E++ ++ MEE I D FT+ SAYA D+ +
Sbjct: 181 GMANSYAYN-AMMNLYSQIGQVERVHSMYKSMEEGGIVPDIFTIDNLVSAYADVEDVEAI 239
Query: 116 DKIINMTESNPQMVLDFNLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAF----- 163
+K++ N M + ++M A+ ++SE I +++ A+
Sbjct: 240 EKVLEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRITARKDGRVAYGFLLT 299
Query: 164 -----ELKDQLYRIWKHYGQ--TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++ ++ RIW Y N YM + +LLK++D+ GAEK W SK++
Sbjct: 300 MYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAYEEWESKHVY 359
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINH 244
+D L + L+ A+CK GL+EKA++L++
Sbjct: 360 HDSRLINILLTAYCKEGLMEKAEALVDQ 387
>gi|22165052|gb|AAM93669.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432900|gb|AAP54476.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125575303|gb|EAZ16587.1| hypothetical protein OsJ_32059 [Oryza sativa Japonica Group]
Length = 545
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 41/288 (14%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MT++L+ + RL LI +VHG+++A YFD++ L+Q +G V
Sbjct: 140 MTERLHLHLSPGDVAYRLELITKVHGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEAKCV 199
Query: 43 GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
KAE + ++M+ MG A + Y Y +MM L G E++ ++ MEE I D FT
Sbjct: 200 EKAEELFEKMRGMGMA--SSYAYNVMMRLYLQDGQVERVHSMHRTMEESGIVADVFTTDT 257
Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMVL--DFNLLAVLLYM------AMTMLKKSEGLI 153
+AY A DI ++K++ ++ ++ + + +L A+ ++SE I
Sbjct: 258 LVAAYVVAEDIEAIEKVLEKADTCNDLMTWHSYATIGKVLMQSGMEERALQAFQESEKKI 317
Query: 154 ATKRNS-SNAFEL--------KDQLYRIWKHYGQ--TRKVFNKGYMTMMGLLLKLDDVKG 202
A K N + F L ++ RIW Y N YM + +LLK++D+ G
Sbjct: 318 AKKSNRVAYGFLLTMYADLGMNSEVDRIWDVYKSKVPASACNSMYMCRISVLLKMNDIVG 377
Query: 203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
AEK W SK++ +D L + L+ A+CK GL+EKA++L++ KKG
Sbjct: 378 AEKAYEEWESKHVYHDSRLINLLLTAYCKEGLMEKAEALVDQF-VKKG 424
>gi|242034057|ref|XP_002464423.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
gi|241918277|gb|EER91421.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
Length = 496
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 29/262 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI +VHGV AE YF+N+S + +G V KA Q MK++GF
Sbjct: 120 LDLIGQVHGVGAAETYFNNLSDKDKTEKPYGALLNCYTRELLVDKALAHFQNMKELGFVF 179
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M L G E++ +M EM+ I D F+ I ++Y +D G++ +
Sbjct: 180 SALSYNNLMGLYTNIGQHERVPMVMAEMKRDGIVPDNFSYRICINSYGIRADFFGLENTL 239
Query: 120 NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAF------E 164
E PQ+V+D+N AV L A + L+K+E + K +
Sbjct: 240 EEMECEPQIVVDWNTYAVVASNYIKGYLREKAYSALRKAEAKMDKKDGDAYGHLISLYGH 299
Query: 165 LKDQLY--RIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
L D+L R+W H ++ NK Y M+ +L+KLD++ AE L+ W S +DF +
Sbjct: 300 LGDKLEVKRLWALHMLNCKRYINKDYTNMLAVLVKLDEITEAEDLLKEWESSKNAFDFQV 359
Query: 222 PSSLIDAHCKNGLLEKAQSLIN 243
P+ L+ + + GLL+KA++L++
Sbjct: 360 PNVLLTGYRQKGLLDKAETLLD 381
>gi|223949005|gb|ACN28586.1| unknown [Zea mays]
Length = 396
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 33/264 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI ++HGVE AE YF+N+S + +G V KA + MK++GF
Sbjct: 18 LDLIGQIHGVEAAETYFNNLSDKDKTEKPYGALLNCYTRELLVDKALAHFRNMKELGFVF 77
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ +M L G E++ ++M EM+ I D F+ I ++Y +D G++ +
Sbjct: 78 STLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTL 137
Query: 120 NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170
E PQ+V+D+N AV L A + L K+E + + +A+ LY
Sbjct: 138 EEMECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKL--DKQDPDAYRHLISLY 195
Query: 171 ----------RIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
R+W ++ N+ YM M+ +L+KLD++ AE L+ W S +DF
Sbjct: 196 GNLGDKSEAKRLWAVQMSNCKRYINRDYMNMLSVLVKLDEITEAEDLLKEWESSQNSFDF 255
Query: 220 GLPSSLIDAHCKNGLLEKAQSLIN 243
+P+ L+ + + LL+KA+ L++
Sbjct: 256 RVPNVLLTGYRQKALLDKAEMLLD 279
>gi|293331503|ref|NP_001168643.1| uncharacterized protein LOC100382430 [Zea mays]
gi|223949857|gb|ACN29012.1| unknown [Zea mays]
gi|413933913|gb|AFW68464.1| hypothetical protein ZEAMMB73_255812 [Zea mays]
Length = 500
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 33/264 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI ++HGVE AE YF+N+S + +G V KA + MK++GF
Sbjct: 122 LDLIGQIHGVEAAETYFNNLSDKDKTEKPYGALLNCYTRELLVDKALAHFRNMKELGFVF 181
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ +M L G E++ ++M EM+ I D F+ I ++Y +D G++ +
Sbjct: 182 STLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTL 241
Query: 120 NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170
E PQ+V+D+N AV L A + L K+E + + +A+ LY
Sbjct: 242 EEMECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKL--DKQDPDAYRHLISLY 299
Query: 171 ----------RIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
R+W ++ N+ YM M+ +L+KLD++ AE L+ W S +DF
Sbjct: 300 GNLGDKSEAKRLWAVQMSNCKRYINRDYMNMLSVLVKLDEITEAEDLLKEWESSQNSFDF 359
Query: 220 GLPSSLIDAHCKNGLLEKAQSLIN 243
+P+ L+ + + LL+KA+ L++
Sbjct: 360 RVPNVLLTGYRQKALLDKAEMLLD 383
>gi|224125312|ref|XP_002329774.1| predicted protein [Populus trichocarpa]
gi|222870836|gb|EEF07967.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 11/125 (8%)
Query: 131 DFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL----------KDQLYRIWKHYGQTR 180
D L A ++ MAMTMLKK EG I T++ S AF+ KD+LYRIWK +
Sbjct: 93 DRCLKAGIMEMAMTMLKKLEGQI-TEKTKSIAFDTLLKLYARKGNKDELYRIWKSDEKRD 151
Query: 181 KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQS 240
K++NKGYM+M+ LL LDD++ AE + W S+ L Y F +P+ LI+A+C+N LLEKA S
Sbjct: 152 KIYNKGYMSMISSLLMLDDIEAAEMMFKKWESRGLSYYFRVPNILINAYCRNNLLEKAGS 211
Query: 241 LINHA 245
LI+HA
Sbjct: 212 LIDHA 216
>gi|359483464|ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Vitis vinifera]
Length = 506
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 31/263 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI V G AE YF+++ + +G K+ +Q+MK+MGFA
Sbjct: 113 QLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQTDKSLSHLQKMKEMGFA 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L G EK+ ++ EM++ ++ D F+ I ++Y A SDI GM+ +
Sbjct: 173 SSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSNVYPDNFSYRICINSYGAQSDIQGMENV 232
Query: 119 INMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
+ E P +V+D+N AV L A+ LKKSE + KR+ L
Sbjct: 233 LKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL-DKRDGLGYNHLISLY 291
Query: 166 -----KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
K ++ R+W ++ N+ Y+TM+ L++L +++ AEK LR W S YDF
Sbjct: 292 ASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLREWESSGNCYDF 351
Query: 220 GLPSSLIDAHCKNGLLEKAQSLI 242
+P+ +I + + GL EKA++++
Sbjct: 352 RVPNIVIIGYSEKGLFEKAEAML 374
>gi|193806501|sp|Q9C7F1.2|PPR61_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g28020
Length = 566
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 31/271 (11%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
+RL+LI V G+E+AE +F++I K R + + KAE Q+M+D+G
Sbjct: 109 ARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLG 168
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
R + MM L NREK++ L+LEM++ + D T+ Y+A D+ M+
Sbjct: 169 LLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEME 228
Query: 117 KIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL-- 165
K +N E + L+++ L A AM ML+ +E L+ K S L
Sbjct: 229 KFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMK 288
Query: 166 -------KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
++++ R+WK Y + + N GY T++ LLK+DD+ GAE+ + W S L +
Sbjct: 289 LYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEF 348
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
D +P+ L + G+ EKA+ L+N K
Sbjct: 349 DHRIPTMLASGYRDRGMTEKAEKLMNSKTIK 379
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 28/111 (25%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMM 68
+RL L V G+E+AE YF+NI + MKD Y+ +
Sbjct: 441 ARLYLTENVLGLEEAEKYFENIP------------------ENMKDYS-------VYVAL 475
Query: 69 ILNYLTGNRE---KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
+ +Y ++ +D ++ EMEE +++ D T+ YAA S I M+
Sbjct: 476 LSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQAME 526
>gi|15217811|ref|NP_174123.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|12322989|gb|AAG51479.1|AC069471_10 hypothetical protein [Arabidopsis thaliana]
gi|332192782|gb|AEE30903.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 31/271 (11%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
+RL+LI V G+E+AE +F++I K R + + KAE Q+M+D+G
Sbjct: 109 ARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLG 168
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
R + MM L NREK++ L+LEM++ + D T+ Y+A D+ M+
Sbjct: 169 LLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEME 228
Query: 117 KIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL-- 165
K +N E + L+++ L A AM ML+ +E L+ K S L
Sbjct: 229 KFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMK 288
Query: 166 -------KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
++++ R+WK Y + + N GY T++ LLK+DD+ GAE+ + W S L +
Sbjct: 289 LYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEF 348
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
D +P+ L + G+ EKA+ L+N K
Sbjct: 349 DHRIPTMLASGYRDRGMTEKAEKLMNSKTIK 379
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 42/208 (20%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMM 68
+RL L V G+E+AE YF+NI + MKD Y+ +
Sbjct: 441 ARLYLTENVLGLEEAEKYFENIP------------------ENMKDYSV-------YVAL 475
Query: 69 ILNYLTGNRE---KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125
+ +Y ++ +D ++ EMEE +++ D T+ YAA S I M+ +
Sbjct: 476 LSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMRR---- 531
Query: 126 PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK 185
AV +Y + K+ + + ++ E++D R+ K+ +
Sbjct: 532 ---------WAVEVYGDVARCKREVHNLWDECKNNKEEEVEDGKKRL-PVVTTLLKMDDD 581
Query: 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
GY T++ LLKLDDV+G EK W K
Sbjct: 582 GYRTVISSLLKLDDVQGVEKVYGEWKPK 609
>gi|224114960|ref|XP_002316903.1| predicted protein [Populus trichocarpa]
gi|222859968|gb|EEE97515.1| predicted protein [Populus trichocarpa]
Length = 437
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 134/261 (51%), Gaps = 28/261 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISK---------LLRQCLFFG--VGKAEMVVQEMKDMGFA 58
RL+LI +VHG+E AE YF N+ + L C G V K+ VQ+MK++GF
Sbjct: 74 RLDLIGKVHGLESAESYFKNLDEKDKIHKTYGALLNCYVRGGLVEKSLSHVQKMKELGFF 133
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L TG EK+ ++ +M+E I+ D F+ I +Y SD ++KI
Sbjct: 134 STALNYNDLMCLYVNTGLLEKVPDVLSDMKENGISPDLFSYRICLKSYGERSDFDNVEKI 193
Query: 119 INMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSN-------A 162
+ ES + +D+ A + +Y+ A+ LKK E + N +
Sbjct: 194 LREMESQSHISMDWRTFATVANIYLEAGLKEKALVYLKKCEEKVNKNALGYNHLISLYAS 253
Query: 163 FELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
KD++ R+W+ +K N+ Y+T++G L+KL ++ AEK L++W S YDF +
Sbjct: 254 LGNKDEMMRLWELAKANCKKQLNRDYITILGSLVKLGHLEEAEKLLQDWESSCQYYDFRV 313
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P+ ++ + + GL EKA++++
Sbjct: 314 PNVVLIGYSRKGLPEKAEAML 334
>gi|125559056|gb|EAZ04592.1| hypothetical protein OsI_26742 [Oryza sativa Indica Group]
Length = 402
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 132/263 (50%), Gaps = 29/263 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
L+LI E+HG AE YF+N+ + +G V K+ Q+MK++GF
Sbjct: 17 HLDLIGEIHGSSAAETYFNNLPDKDKTEKPYGALLNCYTRELLVEKSLAHFQKMKELGFV 76
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L G EK+ +++ EM+ I D F+ I ++Y +D GM+
Sbjct: 77 FSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGTRADFFGMENT 136
Query: 119 INMTESNPQMVLDFNLLAVLL--YM-------AMTMLKKSEGLIATKRNSSNAFEL---- 165
+ E P++V+D+N AV+ Y+ A + LKK+E I K + S +
Sbjct: 137 LEEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKINIKDSDSYNHLISLYG 196
Query: 166 ----KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K ++ R+W + NK Y TM+ +L+KL++++ AE L+ W S +DF
Sbjct: 197 HLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKEWESSGNAFDFQ 256
Query: 221 LPSSLIDAHCKNGLLEKAQSLIN 243
+P+ L+ + + LL+KA++L++
Sbjct: 257 VPNVLLTGYRQKDLLDKAEALLD 279
>gi|115473169|ref|NP_001060183.1| Os07g0598500 [Oryza sativa Japonica Group]
gi|34393591|dbj|BAC83218.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113611719|dbj|BAF22097.1| Os07g0598500 [Oryza sativa Japonica Group]
gi|215706491|dbj|BAG93347.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 131/262 (50%), Gaps = 29/262 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI E+HG AE YF+N+ + +G V K+ Q+MK++GF
Sbjct: 139 LDLIGEIHGSSAAETYFNNLPDKDKTEKPYGALLNCYTRELLVEKSLAHFQKMKELGFVF 198
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ +M L G EK+ +++ EM+ I D F+ I ++Y +D GM+ +
Sbjct: 199 STLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGTRADFFGMENTL 258
Query: 120 NMTESNPQMVLDFNLLAVLL--YM-------AMTMLKKSEGLIATKRNSS--------NA 162
E P++V+D+N AV+ Y+ A + LKK+E I K + S
Sbjct: 259 EEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKINIKDSDSYNHLISLYGH 318
Query: 163 FELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W + NK Y TM+ +L+KL++++ AE L+ W S +DF +
Sbjct: 319 LGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKEWESSGNAFDFQV 378
Query: 222 PSSLIDAHCKNGLLEKAQSLIN 243
P+ L+ + + LL+KA++L++
Sbjct: 379 PNVLLTGYRQKDLLDKAEALLD 400
>gi|222637397|gb|EEE67529.1| hypothetical protein OsJ_24995 [Oryza sativa Japonica Group]
Length = 491
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 131/262 (50%), Gaps = 29/262 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI E+HG AE YF+N+ + +G V K+ Q+MK++GF
Sbjct: 124 LDLIGEIHGSSAAETYFNNLPDKDKTEKPYGALLNCYTRELLVEKSLAHFQKMKELGFVF 183
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ +M L G EK+ +++ EM+ I D F+ I ++Y +D GM+ +
Sbjct: 184 STLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGTRADFFGMENTL 243
Query: 120 NMTESNPQMVLDFNLLAVLL--YM-------AMTMLKKSEGLIATKRNSS--------NA 162
E P++V+D+N AV+ Y+ A + LKK+E I K + S
Sbjct: 244 EEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKINIKDSDSYNHLISLYGH 303
Query: 163 FELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W + NK Y TM+ +L+KL++++ AE L+ W S +DF +
Sbjct: 304 LGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKEWESSGNAFDFQV 363
Query: 222 PSSLIDAHCKNGLLEKAQSLIN 243
P+ L+ + + LL+KA++L++
Sbjct: 364 PNVLLTGYRQKDLLDKAEALLD 385
>gi|242096946|ref|XP_002438963.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
gi|241917186|gb|EER90330.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
Length = 502
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 128/262 (48%), Gaps = 29/262 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI +HGV AE YF+N+S + +G V KA Q+MK++GF
Sbjct: 126 LDLIGHIHGVGAAETYFNNLSDKDKTEKPYGALLNCYTRERLVDKALAHFQKMKELGFVF 185
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M L E++ ++M EM+ I D F+ I ++Y +D G++ +
Sbjct: 186 TALPYNNLMSLYTNIEQHERVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTL 245
Query: 120 NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFEL----- 165
E PQ+V+D+N V L A + LKK+E + K ++ +
Sbjct: 246 EEMECEPQIVVDWNTYTVVASQYIKGDLREKAYSALKKAEAKMGIKDLAAYRHLISLYGH 305
Query: 166 ---KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W ++ N Y ++ +L+KLD++ AE L+ W + +DF +
Sbjct: 306 LGDKSEVKRLWAVQMSNCQRHLNTDYTNILAVLVKLDEIAEAEDLLKEWETSKNEFDFKV 365
Query: 222 PSSLIDAHCKNGLLEKAQSLIN 243
P+ L+ +C+ GLL+KA++L++
Sbjct: 366 PNVLLTWYCQKGLLDKAEALLD 387
>gi|242096944|ref|XP_002438962.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
gi|241917185|gb|EER90329.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
Length = 503
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 35/265 (13%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK--------------LLRQCLFFGVGKAEMVVQEMKDMG 56
L+LI +HGV AE YF+N+S R+CL V KA Q+MK++G
Sbjct: 126 LDLIGHIHGVGAAETYFNNLSDKDKTEKPYGALLYCYTRECL---VDKALAHFQKMKELG 182
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
F + +MIL E++ ++M EM+ I + F+ I +AY +D G++
Sbjct: 183 FVFTPLPYSNLMILYANVEQHERVPSVMAEMKSNGIVPNNFSYNICINAYGTRADFSGLE 242
Query: 117 KIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFEL-- 165
+ E Q+V+D+ A L A + L+K+E + K + + + +
Sbjct: 243 NTLEEMEFASQVVVDWRTYADVASHYIKGDLREKAYSALQKAEAKMDEKDSFAYSHLISL 302
Query: 166 ------KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
K ++ R+W + + NKGY M+ +L+KLD++ AE L+ W S +D
Sbjct: 303 YGHLGDKSEIKRLWVLQMLKCKGCINKGYKYMLTVLVKLDEIAEAEDLLKKWESSKNEFD 362
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLIN 243
F +P+ L+ +C+ GLL+KA++L++
Sbjct: 363 FKVPNILLKGYCQWGLLDKAEALLD 387
>gi|326530906|dbj|BAK01251.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 511
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 29/262 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV----GKAEMVV-------QEMKDMGFAR 59
L+LI +VHG+ AE YF+ + + +G E++V Q+MK++GF
Sbjct: 133 LDLIGQVHGIGAAEAYFNTLPDKDKTEKPYGALLNCYTRELMVDGSLAHFQKMKELGFVF 192
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EK+ +++ EM+ I D F+ I ++Y +D GM+ +
Sbjct: 193 SSLPYNNLMGLYTNIGQHEKVPSVIAEMKGSGIMPDNFSYRICINSYGTRADFFGMENTL 252
Query: 120 NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSS--------NA 162
E PQ+V+D+N AV L A++ LKK+E I K + +
Sbjct: 253 EDMECEPQIVVDWNTYAVVASNYIKGNLREKAISALKKAEAKIDIKDSDTYNHLISLYGQ 312
Query: 163 FELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W ++ NK Y TM+ +L++LD+++ AE L+ W S +DF +
Sbjct: 313 LGDKSEMRRLWGLQMSNCKRHINKDYTTMLAMLVRLDEIEEAEALLKEWESSENAFDFHV 372
Query: 222 PSSLIDAHCKNGLLEKAQSLIN 243
P+ L+ + +L+KA++L++
Sbjct: 373 PNVLLTGYRHKDMLDKAEALLD 394
>gi|297851240|ref|XP_002893501.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339343|gb|EFH69760.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 667
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 39/275 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
+RL+LI V G+E+AE +F++I K R + + KAE Q+M+++G
Sbjct: 101 ARLHLIENVVGLEEAEKFFESIPKNARDDSVYTTLLNWYARSDKTLCKAEATFQKMRELG 160
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
R MM L +REK++ L+ EM++ + D T+ Y+A D+ M+
Sbjct: 161 LLSRPSPYNAMMSLYIALNDREKVEELLREMKDNDVEADSITVNNVLKLYSAVCDVTAME 220
Query: 117 KIINMTESNPQMVLDF--NLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAFEL-- 165
K +N E + L++ L Y+ A+ ML+ +E L A +++ +A++
Sbjct: 221 KFLNKWEGINGIKLEWLTTLDMAKAYLRARSNGKAIKMLRLTEEL-ADRKSLKSAYDHLM 279
Query: 166 --------KDQLYRIWKHY----GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
++++ RIW Y GQ NKGY T++ LLK+DD+ GAE+ + W S
Sbjct: 280 KLYGEAGNREEVLRIWNLYKMNIGQRD---NKGYRTVIRSLLKVDDIFGAEEIYKVWESL 336
Query: 214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
+L +D +P+ L + + G+ EKA+ LIN K
Sbjct: 337 SLEFDIRIPTMLASGYRERGMTEKAEKLINSKTIK 371
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 62/218 (28%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMM 68
+RL L V G+E+AE YF+NI + MKD Y+ +
Sbjct: 433 ARLYLTENVLGLEKAEKYFENIP------------------ENMKDYSV-------YVAL 467
Query: 69 ILNYLTGNRE---KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125
+ +Y ++ ++ ++ EMEE +++ D T+ YAAAS + M+
Sbjct: 468 LSSYAKSDKNLENMVEEILREMEENNVDPDSITVNYVLKVYAAASKVEAME--------- 518
Query: 126 PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN- 184
++M ++ + KR N +E + G ++ N
Sbjct: 519 -------------MFMRHWAVEMYGNVAGCKREVHNLWEECKNKKE--EKVGDGKECLNV 563
Query: 185 ---------KGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
GY T++ LLKLDDV+GAEK W K
Sbjct: 564 VSTLLKMDDDGYRTVISSLLKLDDVQGAEKVYGEWKPK 601
>gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 490
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 29/264 (10%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFAR 59
L+L+ + G+ AEI+F ++ + + L +G +AE ++++MK++
Sbjct: 97 LDLVAKTRGIPAAEIFFIDLPETSKNHLTYGALLNCYCNQLMTEEAEALMEKMKELNLGL 156
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G E+I ++ EM+ SI D +T + A AA +DI G +++I
Sbjct: 157 SSMSYNSLMTLYTKIGQPERIPGIIQEMKSDSIMPDSYTYNVWMRALAAVNDISGAERVI 216
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT--KRN---SSNAFELK------ 166
+ + ++ D+ + L +Y+ + +K+E + KRN +AF+
Sbjct: 217 EEMKRDGRVAADWTTYSNLASIYVDAQLFEKAEKTLKELEKRNVHRDHSAFQFLITLYGR 276
Query: 167 ----DQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+LYRIW+ K N Y+ M+ +L+ L D+ GAEK R W S YD +
Sbjct: 277 IGNLHELYRIWRSLRLAFPKTSNISYLNMIQVLVNLKDLPGAEKCFREWESNCSGYDIRV 336
Query: 222 PSSLIDAHCKNGLLEKAQSLINHA 245
+ LI A+ K GLLEKA+ L A
Sbjct: 337 ANVLIKAYAKKGLLEKAEELKERA 360
>gi|296083491|emb|CBI23460.3| unnamed protein product [Vitis vinifera]
Length = 444
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 29/267 (10%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI + GV AE YF ++ + + L +G KAE +++ MK++
Sbjct: 96 LDLITKTRGVAAAENYFIDLPETSKNHLTYGALLNCYCKELLTEKAEALMERMKELKLGL 155
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EKI ++ E++ I D +T I A AA +DI G++++I
Sbjct: 156 SSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVI 215
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT--KRNSS---NAFELKDQLY-- 170
+ + ++ D+ + L +Y+ + +K+E + KRN+ AF+ LY
Sbjct: 216 EEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGR 275
Query: 171 --------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
R+W+ K N Y+ M+ +L+ L D+ GAEK R W S YD +
Sbjct: 276 IGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRV 335
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETK 248
++LI A+ K+GLLEKA+ L HA +
Sbjct: 336 ANALIGAYAKDGLLEKAEELKEHARRR 362
>gi|225468646|ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
[Vitis vinifera]
Length = 489
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 29/267 (10%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI + GV AE YF ++ + + L +G KAE +++ MK++
Sbjct: 96 LDLITKTRGVAAAENYFIDLPETSKNHLTYGALLNCYCKELLTEKAEALMERMKELKLGL 155
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EKI ++ E++ I D +T I A AA +DI G++++I
Sbjct: 156 SSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVI 215
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT--KRNSS---NAFELKDQLY-- 170
+ + ++ D+ + L +Y+ + +K+E + KRN+ AF+ LY
Sbjct: 216 EEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGR 275
Query: 171 --------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
R+W+ K N Y+ M+ +L+ L D+ GAEK R W S YD +
Sbjct: 276 IGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRV 335
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETK 248
++LI A+ K+GLLEKA+ L HA +
Sbjct: 336 ANALIGAYAKDGLLEKAEELKEHARRR 362
>gi|297829684|ref|XP_002882724.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328564|gb|EFH58983.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 518
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 28/247 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLR-QCLF------------FGVGKAEMVVQEMKDMG 56
R +LI V G+E+AE +F +I + L+ + ++ + KAE ++M+ +G
Sbjct: 117 RFHLIENVLGLEEAEKFFQSIPENLKGESIYTSLLKSYAKSGEISLRKAEYTFEKMRKLG 176
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
R M+ L NR K+D ++ EM+E ++ D T+ YAA D+ MD
Sbjct: 177 MLLRPSPYNSMVSLYSSLRNRNKVDEILREMKENNLELDSPTVNNALRVYAAVCDVATMD 236
Query: 117 KIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY 176
K + D+N + L ++ + K+ LI R A E +D +YRIW Y
Sbjct: 237 KFL----------ADWNAITTLEWLTTLEMAKAYRLI---RLYGEAGERED-VYRIWDLY 282
Query: 177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN-WTSKNLPYDFGLPSSLIDAHCKNGLL 235
T++ N+G+ ++G LLKLDD+ GAEK + W S L +D +P+ L+ + G++
Sbjct: 283 KNTKEKDNEGFRALIGSLLKLDDINGAEKIYYDEWESSGLEFDLRIPTMLMSGYRAKGMV 342
Query: 236 EKAQSLI 242
+KA L+
Sbjct: 343 KKADKLL 349
>gi|449457827|ref|XP_004146649.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 204
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 11/110 (10%)
Query: 145 MLKKSEGLIATKRNSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLL 194
MLKKSEGL+A + AF + KD+++RIW Y + K+FNKG+++M+ L
Sbjct: 1 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLY-KKEKIFNKGFISMITSL 59
Query: 195 LKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
LDD+KGAE+ + W ++ L YD +P+ L+DA+C+ GL+EKA+ L+N
Sbjct: 60 FVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNE 109
>gi|255556039|ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541717|gb|EEF43265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 485
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 29/260 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +V G AE YF+N+ + +G ++ Q+MK+MG A
Sbjct: 88 QLDLIGKVRGFLSAENYFNNLMDHDKTDKTYGALLNCYVRQRQTDRSISHWQKMKEMGLA 147
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L G EK+ ++ EM+E I+ D F+ I ++Y A SDI GM+K+
Sbjct: 148 SSPLAYNDIMCLYINLGLYEKVLHVLTEMKENKISPDNFSYRICINSYGARSDIQGMEKV 207
Query: 119 INMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSS--------N 161
+N E +D+N AV+ Y+ A+ L+KSE + K
Sbjct: 208 LNEMECRLGNAMDWNTYAVVANFYIKAGLADKAVDALRKSEEKLDKKDGIGYNHLISLYA 267
Query: 162 AFELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+K ++ RIW ++ N+ ++TM+ L+KL D++ AEK L+ W S YD
Sbjct: 268 TLGIKSEVLRIWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAEKVLKEWESSGNFYDVR 327
Query: 221 LPSSLIDAHCKNGLLEKAQS 240
+P+ ++ + KNGL EKA++
Sbjct: 328 IPNIVVVGYSKNGLHEKAEA 347
>gi|343172214|gb|AEL98811.1| pentatricopeptide repeat-containing protein, partial [Silene
latifolia]
Length = 359
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 132/269 (49%), Gaps = 30/269 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFAR 59
L+LI + HGV AE YF ++ + + +G KAE ++++MK++G
Sbjct: 27 LDLIGKTHGVAAAENYFIDLPESSKNIECYGALLNIYCKELIPDKAEALMEKMKELGLPI 86
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M L TG EK+ AL+ EM+ I +T + A AA DI+G+++++
Sbjct: 87 TAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYNVWMRALAAVKDIYGVERVL 146
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT--KRNSSNAFELKD-------- 167
+ + + ++ D+ + L +Y+ M +K+E + KRN+S
Sbjct: 147 DEMKRDGRVAEDWTTYSNLASIYVESKMFEKAENALKELEKRNTSQDLSPYQFLLTLYGK 206
Query: 168 -----QLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
++YR+W+ K N Y+ M+ L+ L D+KGAEK +W S YD +
Sbjct: 207 TGNLIEVYRVWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKGAEKCFADWESSCTNYDIRI 266
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ A+ K+GLL++A+ L A K+G
Sbjct: 267 ANVLMGAYIKDGLLQQAKELKKRA-CKRG 294
>gi|357446577|ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482612|gb|AES63815.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 495
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 127/261 (48%), Gaps = 29/261 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L VHG AE YF+++ + R G V K+ +++MK++GFA
Sbjct: 103 LDLTGRVHGFYAAETYFNSLKDIERNEKTHGALLNCYVRQRQVDKSLSHLKKMKELGFAL 162
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EK+ + EM+E + D F+ I +Y SDI GM+ I+
Sbjct: 163 SSLTYNNIMCLYTNIGQHEKVSDVFNEMKENHVLPDNFSYRICIGSYGVRSDIDGMNAIL 222
Query: 120 NMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFEL----- 165
ES P +V+D+N +V+ Y+ A+ L+K E + K +
Sbjct: 223 KEMESQPHIVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLYAR 282
Query: 166 ---KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K+++ R+W ++ N+ ++TM+ L+KL++ A+K L+ W YD+G+
Sbjct: 283 LGKKNEVLRLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEWEFSGNCYDYGV 342
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P+ ++ + + EKA++++
Sbjct: 343 PNVVVVGYSEKDFPEKAEAIL 363
>gi|293332912|ref|NP_001168310.1| hypothetical protein [Zea mays]
gi|223947377|gb|ACN27772.1| unknown [Zea mays]
gi|414586053|tpg|DAA36624.1| TPA: hypothetical protein ZEAMMB73_688721 [Zea mays]
Length = 513
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 130/270 (48%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YFD + ++ +G K E ++M+ GFA
Sbjct: 152 QLDLIAKVRGVPHAEKYFDELPDAMKDKRTYGSLLNVYAQAMMKEKTEETFEQMRKKGFA 211
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ C ++M +G +++ A++ EM+E++++ D T I + AA D M+++
Sbjct: 212 SDTLPCNVLMNFYVDSGEPDEVLAIIDEMKERNVSFDVCTYNIWIKSCAAKQDAEEMEQV 271
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI--ATKRNSSNAFEL--------- 165
+ ++ +V ++ L +Y+ + +K+E + A KR + +
Sbjct: 272 FSQMIADESVVANWTTYTTLASMYLKLGNSEKAEECLKDAEKRTTGREKKCFHYLMTLYS 331
Query: 166 ----KDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YRIW Y T + N GY ++ L+++ D++GAE W SK+ +D
Sbjct: 332 HLGKKEEVYRIWNWYKATFPMIHNLGYQELLSALIRIGDIEGAELLYEEWASKSYSFDPK 391
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + K GL+ KA+ +N K G
Sbjct: 392 TMNILLAWYAKEGLITKAEQTVNRFVEKGG 421
>gi|449457725|ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 227
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 18/141 (12%)
Query: 1 MTDKLYIP-------SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFFG----------V 42
M+DK Y P R+NLI VHG+EQ E YFDN+ S+L R + V
Sbjct: 87 MSDKRYFPLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCV 146
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KA +Q++K+MGFA + IMM L + G E++D+L+ EM+E+ + D+FT IR
Sbjct: 147 DKANAFMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIR 206
Query: 103 PSAYAAASDIHGMDKIINMTE 123
SAYAAASD G++KI+ E
Sbjct: 207 ISAYAAASDFRGIEKIMEQME 227
>gi|356514762|ref|XP_003526072.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Glycine max]
Length = 492
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 126/264 (47%), Gaps = 34/264 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI VHGVE AE Y ++S + G V K+ ++Q+MKDMGF
Sbjct: 105 QLDLIGRVHGVESAERYLQSLSDGDKTWKVHGALLNCYVREGLVDKSLSLMQKMKDMGFV 164
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
Y IM + T EK+ ++ +M++ + + F+ I ++Y D+ ++K+
Sbjct: 165 SFLNYNNIMSLYTQ-TQQYEKVPGVLEQMKKDGVPPNIFSYRICINSYCVRGDLANVEKL 223
Query: 119 INMTESNPQ---------MVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAF------ 163
+ E P MV +F + A + A+ L K E T R ++ A+
Sbjct: 224 LEEMEREPHIGIDWITYSMVTNFYIKADMREKALVCLMKCEK--KTHRGNTVAYNHLISH 281
Query: 164 ----ELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
K + R WK +K N+ Y+TM+G L+KL ++ AEK L W D
Sbjct: 282 NAALRSKGGMMRAWKLQKANCKKQLNREYITMLGCLVKLGELDKAEKVLGEWELSGNTCD 341
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLI 242
F +P+ L+ +C+ GL+EKA++L+
Sbjct: 342 FRVPNILLIGYCQRGLVEKAEALL 365
>gi|242076656|ref|XP_002448264.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
gi|241939447|gb|EES12592.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
Length = 515
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YFD + ++ +G K E ++M+ GFA
Sbjct: 154 QLDLIAKVRGVSHAEKYFDELPDAMKDKRTYGSLLNVYAQAMMKEKTEDTFEQMRKKGFA 213
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ C ++M +G ++ A++ EM+E++++ D T I + AA D M+++
Sbjct: 214 SDTLPCNVLMNFYVDSGEPNEVLAIIDEMKERNVSFDVCTYNIWIKSCAAKQDAEEMERV 273
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI--ATKRNSSNAFEL--------- 165
+ ++ +V ++ L +Y+ + +K+E + A KR + +
Sbjct: 274 FSQMIADESVVANWTTYTTLASMYIKLGNSEKAEECLKDAEKRTTGREKKCFHYLMTLYS 333
Query: 166 ----KDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YRIW Y T + N GY ++ L+++ D++GAE W SK+ +D
Sbjct: 334 HLGKKEEVYRIWNWYKATFPMIHNLGYQELLSALVRIGDIEGAELLYEEWASKSSSFDPK 393
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + K GL+ KA+ +N K G
Sbjct: 394 TMNILLAWYAKEGLITKAEQTLNRFVEKGG 423
>gi|297835552|ref|XP_002885658.1| hypothetical protein ARALYDRAFT_899047 [Arabidopsis lyrata subsp.
lyrata]
gi|297331498|gb|EFH61917.1| hypothetical protein ARALYDRAFT_899047 [Arabidopsis lyrata subsp.
lyrata]
Length = 737
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 34/266 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGF 57
+R +LI V G+E+A + ++I + LR + + KAE ++M+++G
Sbjct: 98 TRFHLIENVFGLEEAGNFVESIPENLRNESIYNSLLSSYVRRNDLDKAESTFKKMRELGL 157
Query: 58 A-RRTIYCYIMMILNYLT-GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
R + Y + + + GNR K+D ++ EM+E +I D+ T+ YA + I M
Sbjct: 158 LLRASPYNSMTSLYRRIPHGNRCKVDEILREMKESNIKLDRDTVNNALRVYADVTHIATM 217
Query: 116 DKIINMTESNPQMVLDFNLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAFEL--- 165
+K + E N + L Y+ A ML+++E L R+ + EL
Sbjct: 218 EKFLAEWEGNTPLDWLTRLDMAKAYLRSGFKGKAKEMLRRTEEL----RDPKSYEELMRL 273
Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK-TLRNWTSKNLPYD 218
+ +YR+W Y + K N+G+ ++G LLKLDD+ GAE+ + W LP+D
Sbjct: 274 YGEAGGRKDVYRVWDLYKKLSKKDNEGFRALIGSLLKLDDINGAEEFYYKEWECSGLPFD 333
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINH 244
+P+ L+ ++ + G++EKA LI
Sbjct: 334 VRIPTMLVSSYREKGMVEKADKLIKE 359
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 50/261 (19%)
Query: 9 SRLNLIFEVHGVEQAEIYFD-NISKLLRQCLFFG------------VGKAEMVVQEMKDM 55
+RL++I V G E+AE +F+ +I + ++ +G + KAE + ++M D+
Sbjct: 427 ARLHMIENVLGFEEAEKFFERSIPENMKDDYVYGTLLSCYAKSHKTLDKAEAIFEKMGDL 486
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF + M+ L G REK++ L+ +M+ +I D T+ YA +DI M
Sbjct: 487 GFLSKPSPFNSMISLYSQLGKREKVENLISKMKCMNIEPDSLTMNNVLRMYADETDIKTM 546
Query: 116 DKI----INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---KDQ 168
DK IN E N + L + +AM + GL+ A E+ K++
Sbjct: 547 DKYKREWIN-AEKNTK-------LEMRTMVAMANAYERAGLLL------KAIEITRSKNE 592
Query: 169 LYRIWKHYGQTRK----------------VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212
++R+W Y + K V ++ Y +++ LLKLDD+KGAE+ W
Sbjct: 593 VHRLWNEYKEKEKRNYKIDDANLCKCRSAVGDEEYQSVISSLLKLDDLKGAEEIYGEWEP 652
Query: 213 KNLPYDFGLPSSLIDAHCKNG 233
+ ++ +P +I +CK G
Sbjct: 653 EGPEFNTRIPCLIISRYCKEG 673
>gi|297799892|ref|XP_002867830.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313666|gb|EFH44089.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 492
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 37/265 (13%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI V+G AE YF+N+ + + +G V K+ + Q+MK+MGF
Sbjct: 100 LDLIGRVYGFVTAEEYFENLKEQYKNEKTYGALLNCYVRQQNVEKSLLHFQKMKEMGFVS 159
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EK+ ++ EM+E+++ D ++ I +A+ A SD+ + I+
Sbjct: 160 SSLTYNNIMCLYTNIGQHEKVPGVLDEMKEENVAPDNYSFRICINAFGAMSDLERIGGIL 219
Query: 120 NMTESNPQMVLDFNLLAV----------------LLYMAMTMLKKSEG-----LIATKRN 158
E P +D+N AV LL M+ L+K +G LI
Sbjct: 220 RDMERRPDFTMDWNTYAVAAKFYIDGGDCDRAVELLKMSEYRLEKKDGEGYNHLITLYAR 279
Query: 159 SSNAFELKDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
N E + R+W+ ++ N+ Y+T++ L+K+D +K AE L W S Y
Sbjct: 280 LGNKIE----VLRLWELEKEACKRRINQDYLTVLQSLMKIDGLKEAEVVLTEWESSGNCY 335
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLI 242
DF +P+++I + + EKA++++
Sbjct: 336 DFRVPNTVIRGYTGKSMEEKAEAML 360
>gi|343172216|gb|AEL98812.1| pentatricopeptide repeat-containing protein, partial [Silene
latifolia]
Length = 359
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 130/269 (48%), Gaps = 30/269 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFAR 59
L+LI + HGV AE YF ++ + + +G KAE ++++MK++G
Sbjct: 27 LDLIGKTHGVAAAENYFIDLPESSKNIECYGALLNIYCKELIPDKAEALMEKMKELGLPI 86
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M L TG EK+ AL+ EM+ I +T + A AA DI+G+++++
Sbjct: 87 TAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYNVWMRALAAVKDIYGVERVL 146
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT--KRNSSNAFELKD-------- 167
+ + + ++ D+ + L +Y+ M K+E + KRN+S
Sbjct: 147 DEMKRDGRVAEDWTTYSNLASIYVESKMFDKAENALKELEKRNTSRELSPYQFLLTLYGK 206
Query: 168 -----QLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
++YR+W+ K N Y+ M+ L+ L D+KGAEK +W S YD +
Sbjct: 207 TGNLIEVYRLWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKGAEKCFADWESSCTNYDIRI 266
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ A+ K+G L++A+ L A K+G
Sbjct: 267 ANVLMGAYIKDGSLQQAKELKKRA-CKRG 294
>gi|357165075|ref|XP_003580262.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Brachypodium distachyon]
Length = 513
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+L+ +V GV AE YF+++ L+ +G K E ++M+ G+A
Sbjct: 152 QLDLVAKVRGVPHAEEYFESLPDPLKDKRTYGSLLNVYAQARMKEKTEDTFEQMRKKGYA 211
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M +K+ A+ EM+E++++ D T I ++AA D GMD++
Sbjct: 212 SDTLPFNVLMNFYVDVEEPQKVSAVTDEMKERNVSFDVCTYNIWIKSFAAMKDADGMDRV 271
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM--LKKSEGLI--ATKRNSS-------------N 161
N ++ +V ++ L M + + +K+E + A KR + +
Sbjct: 272 FNQMIADESVVANWTTYTTLASMHIKLGNFEKAEVCLKEAEKRTTGRDKKCFHFLITLYS 331
Query: 162 AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+ K+++YRIW Y T + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 332 YLQKKEEVYRIWNWYKATFSTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 391
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KA+ +N K G
Sbjct: 392 TMNILLAWYSREGFVVKAEQTLNRFVEKGG 421
>gi|357131918|ref|XP_003567580.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
mitochondrial-like [Brachypodium distachyon]
Length = 545
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 124/269 (46%), Gaps = 31/269 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+L+++V G+E AE YF+ + + +G KA + +M D+G A
Sbjct: 153 RLDLVYKVRGIEAAEKYFNGLPDPAKNHRTYGALLNCYCSSKKEEKATDLFHKMDDLGIA 212
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L G +K+ L EM+ K++ D T + ++YAA + I ++++
Sbjct: 213 SSTLPFNNLMSLYMKLGQHKKVAGLFEEMKAKNVKPDNLTCCVLMTSYAALNKIDAVEEV 272
Query: 119 I-NMTESNPQM-------VLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170
+ M E N + + + A L+ A + LKK EGL+ R+ F+ LY
Sbjct: 273 LKEMEEKNAALGWSAYSTLASIYVSAGLVEKAESALKKLEGLVQP-RDGRQPFDFLMSLY 331
Query: 171 ----------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
R+W T KV N Y +M+ L KL+D ++ W S + YD
Sbjct: 332 ASVGNLSEVNRVWDVVKATFPKVTNTSYFSMLQALYKLNDADRIKQIFEEWESNHECYDV 391
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAETK 248
L + + AH KNGL ++A+ L A+ K
Sbjct: 392 KLTNIMTRAHLKNGLTKEAELLWEKAKAK 420
>gi|326493098|dbj|BAJ85010.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510377|dbj|BAJ87405.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 125/270 (46%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF+ + L+ +G K E ++M+ GFA
Sbjct: 142 QLDLIAKVRGVPDAEEYFEKLPDPLKDKRTYGSLLNVYAQARMKEKTEYTFEQMRKKGFA 201
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ + EM++++I+ D T I AA D M+++
Sbjct: 202 TDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFDVCTYNIWIKCCAAMKDADAMERV 261
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM--LKKSEGLI------ATKRNSS---------N 161
+N ++ +V ++ L M + + +K+E + AT R+ +
Sbjct: 262 LNQMTADESVVANWTTYTTLASMHIKLENFEKAEECLKEAEKRATGRDKKCFHFLITLYS 321
Query: 162 AFELKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+ K+++YRIW Y T K + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 322 HLQKKEEVYRIWNWYKATFKTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 381
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KAQ +N K G
Sbjct: 382 TMNILLAWYSREGFVVKAQQTLNRFVEKGG 411
>gi|148909871|gb|ABR18022.1| unknown [Picea sitchensis]
Length = 561
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 134/274 (48%), Gaps = 35/274 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGFAR 59
L LI +VHG+ AE Y+ ++ + L + + K+E +++E+KD+GF
Sbjct: 167 LGLIAKVHGIASAEKYYVDLHHYEKNHLTYFALLNCYVQEKNIEKSEAIMEELKDLGFI- 225
Query: 60 RTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+T + Y M+ Y+ T EK+ ++ EM++K I+ D I +YAA SD+ + ++
Sbjct: 226 KTAFPYTEMMTLYMNTEQFEKVPLVIQEMKKKGISLDIHCYNIWMRSYAALSDMDQVAEV 285
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFEL----------- 165
N E + + D+++ + L +Y+ +L K+ + N E
Sbjct: 286 FNEIERDDNINTDWSIYSTLANIYINAKVLDKAGSALKEMENKMKEIETKKDQLAYNHLI 345
Query: 166 --------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
KD++YRIW+ + K+ N+ Y+ ++ L+ + D++GAE ++ W S
Sbjct: 346 SLHGRLGNKDEVYRIWQSFELAFPKMTNRSYVCLLSSLVGMGDIEGAEVFIKKWESMKTF 405
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
D + +L++A+ + G L+KA+ L+ K G
Sbjct: 406 DDSRIYYALLNAYIEKGWLQKAELLLERVVDKGG 439
>gi|326498623|dbj|BAK02297.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV E YF+ + L+ +G K E ++M+ GFA
Sbjct: 142 QLDLIAKVRGVPDTEEYFEKLPDPLKDKRTYGSLLNVYAQARMKEKTEYTFEQMRKKGFA 201
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ + EM++++I+ D T I AA D M+++
Sbjct: 202 TDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFDVCTYNIWIKCCAAMKDADAMERV 261
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM--LKKSEGLI------ATKRNSS---------N 161
+N ++ +V ++ L M + + +K+E + AT R+ +
Sbjct: 262 LNQMTADESVVANWTTYTTLASMHIKLENFEKAEECLKEAEKRATGRDKKCFHFLITLYS 321
Query: 162 AFELKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+ K+++YRIW Y T K + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 322 HLQKKEEVYRIWNWYKATFKTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 381
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KAQ +N K G
Sbjct: 382 TMNILLAWYSREGFVVKAQQTLNRFVEKGG 411
>gi|449431834|ref|XP_004133705.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Cucumis sativus]
gi|449478158|ref|XP_004155237.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Cucumis sativus]
Length = 492
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 135/267 (50%), Gaps = 37/267 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI +V G++ AE YF ++S +G + K+ +Q+MK+MG A
Sbjct: 120 QLDLIGQVRGLDSAEKYFGSVSNQKEIGKLYGALLNCYVREGLIDKSLAHMQKMKEMGLA 179
Query: 59 RRTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
+ CY ++ YL TG +K+ ++ EM+E + D F+ I S+Y A SD+ M+
Sbjct: 180 SSPL-CYNDIMCLYLNTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGARSDVISMEN 238
Query: 118 I---------INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEG-----------LIATKR 157
+ I+M + MV F + A + AM L+K E LI+
Sbjct: 239 VLKEMEGQTHISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDEDALGFNHLISHYT 298
Query: 158 NSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
N + K+++ R+W + +K N+ Y+TM+G L+KL+ ++ AE + W S Y
Sbjct: 299 NLGH----KNEVMRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENLVMEWESSCQCY 354
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINH 244
DF +P+ ++ + + GL+EKA+ ++ +
Sbjct: 355 DFRVPNVVLIGYSQKGLIEKAEKMLRN 381
>gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 491
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 39/274 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ + G+ E YF ++ + + L +G KAE ++ +MK++
Sbjct: 97 LDLVAKARGITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITP 156
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L TG EK+ A++ E++ +++ D +T + A AA +DI G++++I
Sbjct: 157 SSMSYNSLMTLYTKTGQTEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVI 216
Query: 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKD------------ 167
+ ++ D+ Y M + GL + E+K+
Sbjct: 217 EEMNRDGRVAPDWTT-----YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLI 271
Query: 168 ----------QLYRIWKHYG-QTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++YRIW+ K N Y+ M+ +L+KL+D+ GAE + W +
Sbjct: 272 TLYGRLGKLTEVYRIWRSLRLAMPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCST 331
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
YD + + LI A+ K GL+EKA+ L A + G
Sbjct: 332 YDIRIVNVLIGAYAKEGLIEKAKELKEKAPRRGG 365
>gi|20453085|gb|AAM19786.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
gi|29028736|gb|AAO64747.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
Length = 524
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V G+ AE +F + + + +G KAE ++ M+D G+A
Sbjct: 142 QLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYA 201
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+DA++ EM++K I D ++ I S+ + + M+ +
Sbjct: 202 LHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELV 261
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
+S+ + ++ + + M + M L+K E I + + L
Sbjct: 262 YQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYG 321
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K +LYR+W Y + N GY ++ L+++ D++GAEK W YD
Sbjct: 322 SLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPR 381
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+P+ L++A+ KN LE A+ L +H
Sbjct: 382 IPNLLMNAYVKNDQLETAEGLFDH 405
>gi|356503236|ref|XP_003520417.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Glycine max]
Length = 555
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE +F ++ L+ +G KAE + M+ G+
Sbjct: 155 QLDLIAKVRGVSSAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGYV 214
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L K+D L EM EK+I D +T I S+ + + M+++
Sbjct: 215 IHALPINVMMTLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQV 274
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
E +P +V +++ + L M + M L+K EG I + + L
Sbjct: 275 FEQMERDPTIVPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPFHYLLSLYG 334
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
KD++YR+W Y ++ N GY ++ L+KLDD++GAEK W S YD
Sbjct: 335 SVGKKDEVYRVWNTYKSIFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWISVKSSYDPR 394
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ + K +KA S
Sbjct: 395 IGNLLMGWYVKKDDTDKALSFFEQ 418
>gi|22329290|ref|NP_171717.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806400|sp|Q8LPS6.2|PPR3_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g02150
gi|2317908|gb|AAC24372.1| Unknown protein [Arabidopsis thaliana]
gi|332189272|gb|AEE27393.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 524
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V G+ AE +F + + + +G KAE ++ M+D G+A
Sbjct: 142 QLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYA 201
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+DA++ EM++K I D ++ I S+ + + M+ +
Sbjct: 202 LHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELV 261
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
+S+ + ++ + + M + M L+K E I + + L
Sbjct: 262 YQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYG 321
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K +LYR+W Y + N GY ++ L+++ D++GAEK W YD
Sbjct: 322 SLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPR 381
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+P+ L++A+ KN LE A+ L +H
Sbjct: 382 IPNLLMNAYVKNDQLETAEGLFDH 405
>gi|15229739|ref|NP_187745.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|12322901|gb|AAG51439.1|AC008153_12 hypothetical protein; 6614-8314 [Arabidopsis thaliana]
gi|332641514|gb|AEE75035.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 541
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 29/250 (11%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLR--------------QCLFFGVGKAEMVVQEMKD 54
+R +L +V +E+AE +F++I + +R Q + KAE V ++MK
Sbjct: 115 ARFHLTEKVLNLEEAEKFFESIPENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKK 174
Query: 55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
+G R M L GNR+K+D ++ EM+E ++ D T+ YAA SD+
Sbjct: 175 LGLLLRPSPYNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVAT 234
Query: 115 MDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWK 174
MDK + D + L + M + K+ L++ A E++D ++R+W
Sbjct: 235 MDKFL----------ADRKEITRLDGLTMLAMAKAYELMSL---YGEAGEIED-VHRVWD 280
Query: 175 HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN-WTSKNLPYDFGLPSSLIDAHCKNG 233
Y TR+ N+ + T++G LLKL D KGAEK N W L +D +P L+ + + G
Sbjct: 281 KYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKG 340
Query: 234 LLEKAQSLIN 243
++ KA L+N
Sbjct: 341 MVMKADKLVN 350
>gi|297848282|ref|XP_002892022.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337864|gb|EFH68281.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 523
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V G+ AE +F + + + +G KAE ++ M+D G+A
Sbjct: 141 QLDLIGKVRGISDAEQFFLTLPENFKDRRVYGSLLNAYVRAKSREKAEALLHTMRDKGYA 200
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+DA++ EM++K I D ++ I S+ + + M+ +
Sbjct: 201 LHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELV 260
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
+S+ + ++ + + M + M L+K E I + + L
Sbjct: 261 YQQMKSDVSINPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYG 320
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K +LYR+W Y + N GY ++ L ++ D++GAEK W YD
Sbjct: 321 SVGNKKELYRVWNVYKSVVPSIPNLGYHALVSSLARMGDIEGAEKVYEEWLPVKSSYDPR 380
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+P+ L++ + KN LEKA+ L +H
Sbjct: 381 IPNLLMNVYVKNDQLEKAEGLFDH 404
>gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa]
gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa]
gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa]
Length = 490
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 29/267 (10%)
Query: 11 LNLIFEVHGVEQAEIYFDNI---SKLLRQ--------CLFFGVGKAEMVVQEMKDMGFAR 59
L+L+ + G+ AE YF ++ SK LR C +AE ++++MK++
Sbjct: 97 LDLVAKTRGIPAAENYFIDLPETSKNLRTYGALLNCYCKELMTEEAEALIEKMKELNLGL 156
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G E+I A++ EM+ ++ D +T + A AA +DI G++++I
Sbjct: 157 SSMSYNSLMTLYTKVGQPERIPAIIQEMKADNVMPDSYTYNVWMRALAAVNDISGVERVI 216
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSE-GLIATKRNSSN----AFELKDQLY-- 170
+ + ++ ++ + L +Y+ K+E L ++ ++N AF+ LY
Sbjct: 217 EEMKRDGRVAANWTTYSNLASIYVDAGYFDKAEKALKELEKINANKDLFAFQFLITLYGR 276
Query: 171 --------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
RIW+ K N Y+ M+ +L+ L DV GAEK R W S YD +
Sbjct: 277 TGKLIEVYRIWRSLRLAFPKTANISYLNMIQVLVNLKDVPGAEKCFREWESGCSTYDIRV 336
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETK 248
+ +I A+ K GL++KA+ L A +
Sbjct: 337 ANVVISAYAKEGLVDKAEELKERARRR 363
>gi|358344191|ref|XP_003636175.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355502110|gb|AES83313.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 790
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI VHGV AE +F N++ L+ +G KAE +++ M+ +
Sbjct: 318 QLDLIARVHGVSSAESFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRYL 377
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +MM L+ + +K+D L+ EM+EK+I D +T I S+ + I M+++
Sbjct: 378 THSLPFNLMMTLSMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQV 437
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
+P ++ +++ + + M + M LKK+EG I + + L
Sbjct: 438 FEQMLKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRILGRDKVPFHYLLSLYG 497
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
KD++YR+W +Y + N GY ++ +++DD++ AEK W S D
Sbjct: 498 SVGNKDEVYRVWNNYKSMFPSIPNLGYHAVISSFVRMDDIERAEKLYEEWVSVRPSDDSR 557
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ + LI + K G +K S H G
Sbjct: 558 IGNLLISWYLKKGKSDKVFSFFKHMSEGGG 587
>gi|12321886|gb|AAG50982.1|AC073395_24 hypothetical protein, 3' partial; 101251-102939 [Arabidopsis
thaliana]
Length = 532
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 35/250 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLR--------------QCLFFGVGKAEMVVQEMKD 54
+R +L +V +E+AE +F++I + +R Q + KAE V ++MK
Sbjct: 113 ARFHLTEKVLNLEEAEKFFESIPENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKK 172
Query: 55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
+G R M L GNR+K+D ++ EM+E ++ D T+ YAA SD+
Sbjct: 173 LGLLLRPSPYNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVAT 232
Query: 115 MDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWK 174
MDK + + + L L +AM +G I + ++R+W
Sbjct: 233 MDKFLADRK-------EITRLDGLTMLAMAKAYVRDGEI-------------EDVHRVWD 272
Query: 175 HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN-WTSKNLPYDFGLPSSLIDAHCKNG 233
Y TR+ N+ + T++G LLKL D KGAEK N W L +D +P L+ + + G
Sbjct: 273 KYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKG 332
Query: 234 LLEKAQSLIN 243
++ KA L+N
Sbjct: 333 MVMKADKLVN 342
>gi|4558568|gb|AAD22661.1|AC007138_25 hypothetical protein [Arabidopsis thaliana]
gi|7268583|emb|CAB80692.1| hypothetical protein [Arabidopsis thaliana]
Length = 501
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 37/272 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RLNLI + G+E AE YF+++ ++ +G KA+ + M D+
Sbjct: 112 RLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHV 171
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +M + G EK+ AL++ M+EKSI T + + + D+ G++K+
Sbjct: 172 SNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKV 231
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKD--------- 167
++ ++ + + +N A L +Y+ + + K+E + + N+ N +++D
Sbjct: 232 LDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP-DVRDCYHFLINLY 290
Query: 168 -------QLYRIW----KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++YR+W K Y V N Y+TM+ L KLDD+ G +K W S
Sbjct: 291 TGIANASEVYRVWDLLKKRYPN---VNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWT 347
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
YD + + I ++ K + E+A+++ N A K
Sbjct: 348 YDMRMANVAISSYLKQNMYEEAEAVFNGAMKK 379
>gi|18411800|ref|NP_567220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75163252|sp|Q93WC5.1|PP300_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01990, mitochondrial; Flags: Precursor
gi|14517494|gb|AAK62637.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
gi|16323354|gb|AAL15390.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
gi|332656708|gb|AEE82108.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 502
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 37/272 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RLNLI + G+E AE YF+++ ++ +G KA+ + M D+
Sbjct: 113 RLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHV 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +M + G EK+ AL++ M+EKSI T + + + D+ G++K+
Sbjct: 173 SNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKV 232
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKD--------- 167
++ ++ + + +N A L +Y+ + + K+E + + N+ N +++D
Sbjct: 233 LDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP-DVRDCYHFLINLY 291
Query: 168 -------QLYRIW----KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++YR+W K Y V N Y+TM+ L KLDD+ G +K W S
Sbjct: 292 TGIANASEVYRVWDLLKKRYPN---VNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWT 348
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
YD + + I ++ K + E+A+++ N A K
Sbjct: 349 YDMRMANVAISSYLKQNMYEEAEAVFNGAMKK 380
>gi|125532538|gb|EAY79103.1| hypothetical protein OsI_34209 [Oryza sativa Indica Group]
Length = 479
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 69/263 (26%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MT++L+ + +RL LI +VHG+++A YFD++ L+Q +G V
Sbjct: 141 MTERLHLHLSPGDVANRLELITKVHGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCV 200
Query: 43 GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
KAE + ++M+ MG A + Y Y +MM L G E++ ++ MEE I D
Sbjct: 201 EKAEELFEKMRGMGMA--SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPD------ 252
Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN 161
S H + ++ ++ V Y+ +K E ++ K NS N
Sbjct: 253 -------VSTTHTLVAVLRKKKT-----------LVAAYVVAEDIKAIENVL-EKANSCN 293
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ YM +G+LLK++D+ GAEK W SK++ +D L
Sbjct: 294 SM-----------------------YMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRL 330
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
+ L+DA+CK GL++KA++L++
Sbjct: 331 INLLVDAYCKEGLMDKAEALVDQ 353
>gi|326502008|dbj|BAK06496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 33/270 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI++V G+E AE YF+ + + FG KA + ++M ++G +
Sbjct: 159 RLDLIYKVRGLEAAEKYFEGLPDPAKNHRTFGALLNCYCSSKEEEKATDLYRKMDELGIS 218
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L G +K+ +L EM+EK++ D T I ++ AA + I ++++
Sbjct: 219 SSTLPINNLMSLYMKLGQHKKVCSLFEEMKEKNVKPDNLTCCILMTSLAALNKIDDVEQV 278
Query: 119 INMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFELKDQL 169
+ E VL ++ + L + A + LKK EGL+ R+ F+ L
Sbjct: 279 LKEMEEK-DGVLGWSAYSTLASIYQSAGLVEKAESALKKLEGLV-QDRDGRQPFDFLMSL 336
Query: 170 Y----------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
Y R+W T KV N Y +M+ LLKL+D ++ W S + YD
Sbjct: 337 YASVGNLSEVKRVWGVVKATFPKVTNTSYFSMLQALLKLNDADYMKQVFEEWESNHEFYD 396
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
L + + AH KNG+ ++A+ L A+ K
Sbjct: 397 AKLTNVMTRAHLKNGMAKEAELLWEKAKEK 426
>gi|449479004|ref|XP_004155478.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 259
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 11/141 (7%)
Query: 6 YIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKD 54
+I +L+LI + G+EQAE YF +I + R +G + KAE ++Q+M++
Sbjct: 106 HIAIQLHLISKARGLEQAEEYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMRE 165
Query: 55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
+GF + + M+ L G EK+D L+ EMEE I ++FT +R +AYAAASDI
Sbjct: 166 VGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAAASDITN 225
Query: 115 MDKIINMTESNPQMVLDFNLL 135
M+K+++ E++P + D++ L
Sbjct: 226 MEKLLSKMEADPLVATDWSYL 246
>gi|224137116|ref|XP_002327026.1| predicted protein [Populus trichocarpa]
gi|222835341|gb|EEE73776.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE +F ++ + +G KAE + EM+D G+
Sbjct: 144 QLDLIAKVRGVSTAEDFFLSLPNTFKDRRVYGALLNAYVQNRMREKAETLFDEMRDKGYV 203
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ + M L +K+D ++ EM EK+I D ++ I S+ + M+++
Sbjct: 204 THALPFNVTMTLYMNIKEYDKVDLMISEMNEKNIKLDIYSYNIWLSSCGSQGSADKMEQV 263
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------TKRNSSNAFEL----- 165
+S+ + ++ + + +Y+ M +K+E + T R+ L
Sbjct: 264 YEQMKSDRSINPNWTTFSTMATMYIKMGQFEKAEDCLRRVESRITGRDRIPYHYLLSLYG 323
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y + N GY ++ L++LDD++GAEK W S YD
Sbjct: 324 NVGNKEEVYRVWNIYKSIFPSIPNLGYHAIISSLVRLDDIEGAEKIYEEWLSIKTSYDPR 383
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + I A+ G L++A+S +H
Sbjct: 384 IANLFIAAYVYQGNLDEAKSFFDH 407
>gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770
gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana]
gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana]
gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana]
gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 39/274 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ + + E YF ++ + + L +G KAE ++ +MK++
Sbjct: 97 LDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITP 156
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L TG EK+ A++ E++ +++ D +T + A AA +DI G++++I
Sbjct: 157 SSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVI 216
Query: 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKD------------ 167
+ ++ D+ Y M + GL + E+K+
Sbjct: 217 EEMNRDGRVAPDWTT-----YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLI 271
Query: 168 ----------QLYRIWKHYG-QTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++YRIW+ K N Y+ M+ +L+KL+D+ GAE + W +
Sbjct: 272 TLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCST 331
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
YD + + LI A+ + GL++KA L A + G
Sbjct: 332 YDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGG 365
>gi|115482780|ref|NP_001064983.1| Os10g0501000 [Oryza sativa Japonica Group]
gi|113639592|dbj|BAF26897.1| Os10g0501000, partial [Oryza sativa Japonica Group]
Length = 451
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 69/263 (26%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MT++L+ + +RL LI +V+G+++A YFD++ L+Q +G V
Sbjct: 113 MTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCV 172
Query: 43 GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
KAE + ++M+ MG A + Y Y +MM L G E++ ++ MEE I D
Sbjct: 173 EKAEELFEKMRGMGMA--SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPD------ 224
Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN 161
S H + ++ ++ V Y+ +K E ++ K NS N
Sbjct: 225 -------VSTTHTLVAVLRKKKT-----------LVAAYVVAEDIKAIENVL-EKANSCN 265
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ YM +G+LLK++D+ GAEK W SK++ +D L
Sbjct: 266 SM-----------------------YMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRL 302
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
+ L+DA+CK GL++KA++L++
Sbjct: 303 INLLVDAYCKEGLMDKAEALVDQ 325
>gi|125591164|gb|EAZ31514.1| hypothetical protein OsJ_15655 [Oryza sativa Japonica Group]
Length = 531
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF+ + L+ +G K E ++M+ GFA
Sbjct: 170 QLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFA 229
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ L+ EM E+++ D T I + AA D M+++
Sbjct: 230 TDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQV 289
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---LKKSEGLI-ATKRNSSNAFEL--------- 165
N + +V ++ L M + + K E L A KR + +
Sbjct: 290 FNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYS 349
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y T + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 350 HLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 409
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KA+ +N K G
Sbjct: 410 TMNILLAWYAREGFVTKAEQTLNRFVEKGG 439
>gi|125575301|gb|EAZ16585.1| hypothetical protein OsJ_32057 [Oryza sativa Japonica Group]
Length = 400
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 69/263 (26%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MT++L+ + +RL LI +V+G+++A YFD++ L+Q +G V
Sbjct: 62 MTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCV 121
Query: 43 GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
KAE + ++M+ MG A + Y Y +MM L G E++ ++ MEE I D
Sbjct: 122 EKAEELFEKMRGMGMA--SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPD------ 173
Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN 161
S H + ++ ++ V Y+ +K E ++ K NS N
Sbjct: 174 -------VSTTHTLVAVLRKKKT-----------LVAAYVVAEDIKAIENVL-EKANSCN 214
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ YM +G+LLK++D+ GAEK W SK++ +D L
Sbjct: 215 SM-----------------------YMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRL 251
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
+ L+DA+CK GL++KA++L++
Sbjct: 252 INLLVDAYCKEGLMDKAEALVDQ 274
>gi|125549215|gb|EAY95037.1| hypothetical protein OsI_16851 [Oryza sativa Indica Group]
Length = 511
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF+ + L+ +G K E ++M+ GFA
Sbjct: 150 QLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFA 209
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ L+ EM E+++ D T I + AA D M+++
Sbjct: 210 TDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQV 269
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---LKKSEGLI-ATKRNSSNAFEL--------- 165
N + +V ++ L M + + K E L A KR + +
Sbjct: 270 FNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYS 329
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y T + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 330 HLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 389
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KA+ +N K G
Sbjct: 390 TMNILLAWYAREGFVTKAEQTLNRFVEKGG 419
>gi|32488964|emb|CAE04345.1| OSJNBb0038F03.9 [Oryza sativa Japonica Group]
Length = 511
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF+ + L+ +G K E ++M+ GFA
Sbjct: 150 QLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFA 209
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ L+ EM E+++ D T I + AA D M+++
Sbjct: 210 TDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQV 269
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---LKKSEGLI-ATKRNSSNAFEL--------- 165
N + +V ++ L M + + K E L A KR + +
Sbjct: 270 FNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYS 329
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y T + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 330 HLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 389
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KA+ +N K G
Sbjct: 390 TMNILLAWYAREGFVTKAEQTLNRFVEKGG 419
>gi|22165078|gb|AAM93695.1| putative leaf protein [Oryza sativa Japonica Group]
Length = 372
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 67/261 (25%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MT++L+ + +RL LI +V+G+++A YFD++ L+Q +G V
Sbjct: 34 MTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCV 93
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE + ++M+ MG A Y +MM L G E++ ++ MEE I D
Sbjct: 94 EKAEELFEKMRGMGMASSYAY-NVMMRLYLQNGQVERVHSMHQAMEESGIVPD------- 145
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNA 162
S H + ++ ++ V Y+ +K E ++ K NS N+
Sbjct: 146 ------VSTTHTLVAVLRKKKT-----------LVAAYVVAEDIKAIENVL-EKANSCNS 187
Query: 163 FELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
YM +G+LLK++D+ GAEK W SK++ +D L
Sbjct: 188 M-----------------------YMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLI 224
Query: 223 SSLIDAHCKNGLLEKAQSLIN 243
+ L+DA+CK GL++KA++L++
Sbjct: 225 NLLVDAYCKEGLMDKAEALVD 245
>gi|78708864|gb|ABB47839.1| expressed protein [Oryza sativa Japonica Group]
gi|215701127|dbj|BAG92551.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 341
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 67/262 (25%)
Query: 1 MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
MT++L+ + +RL LI +V+G+++A YFD++ L+Q +G V
Sbjct: 3 MTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCV 62
Query: 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
KAE + ++M+ MG A Y +MM L G E++ ++ MEE GI
Sbjct: 63 EKAEELFEKMRGMGMASSYAY-NVMMRLYLQNGQVERVHSMHQAMEES---------GIV 112
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNA 162
P S H + ++ ++ V Y+ +K E ++ K NS N+
Sbjct: 113 PDV----STTHTLVAVLRKKKT-----------LVAAYVVAEDIKAIENVL-EKANSCNS 156
Query: 163 FELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
YM +G+LLK++D+ GAEK W SK++ +D L
Sbjct: 157 M-----------------------YMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLI 193
Query: 223 SSLIDAHCKNGLLEKAQSLINH 244
+ L+DA+CK GL++KA++L++
Sbjct: 194 NLLVDAYCKEGLMDKAEALVDQ 215
>gi|297603118|ref|NP_001053460.2| Os04g0544400 [Oryza sativa Japonica Group]
gi|255675659|dbj|BAF15374.2| Os04g0544400 [Oryza sativa Japonica Group]
Length = 571
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF+ + L+ +G K E ++M+ GFA
Sbjct: 150 QLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFA 209
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ L+ EM E+++ D T I + AA D M+++
Sbjct: 210 TDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQV 269
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---LKKSEGLI-ATKRNSSNAFEL--------- 165
N + +V ++ L M + + K E L A KR + +
Sbjct: 270 FNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYS 329
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y T + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 330 HLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 389
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KA+ +N K G
Sbjct: 390 TMNILLAWYAREGFVTKAEQTLNRFVEKGG 419
>gi|356522970|ref|XP_003530115.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Glycine max]
Length = 546
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V G+ AE +F ++ L+ +G KAE + M+ G+
Sbjct: 156 QLDLIAKVRGLSSAEAFFLSLEDKLKDKKTYGALLNVYVHSRSKEKAESLFDTMRSKGYV 215
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L K+D L EM EK+I D +T I S+ + + M+++
Sbjct: 216 IHALPFNVMMTLYMNLNEYAKVDILASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQV 275
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
E +P ++ +++ + + M + M L+K EG I + + L
Sbjct: 276 FEQMEKDPSIIPNWSTFSTMASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSLYG 335
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
KD++ R+W Y + N GY ++ L+KLDD++ AEK W S YD
Sbjct: 336 SVGKKDEVCRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEVAEKLYEEWISVKSSYDPR 395
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + LI + K G +KA S
Sbjct: 396 IGNLLIGWYVKKGDTDKALSFFEQ 419
>gi|218195308|gb|EEC77735.1| hypothetical protein OsI_16848 [Oryza sativa Indica Group]
Length = 1300
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF+ + L+ +G K E ++M+ GFA
Sbjct: 150 QLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFA 209
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ ++M EK+ L+ EM E+++ D T I + AA D M+++
Sbjct: 210 TDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQV 269
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---LKKSEGLI-ATKRNSSNAFEL--------- 165
N + +V ++ L M + + K E L A KR + +
Sbjct: 270 FNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYS 329
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y T + N GY ++ L++L D++GAE W SK+ +D
Sbjct: 330 HLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPK 389
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ + + G + KA+ +N K G
Sbjct: 390 TMNILLAWYAREGFVTKAEQTLNRFVEKGG 419
>gi|356526773|ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Glycine max]
Length = 490
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 37/271 (13%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ + G+ AE YF ++ + + L +G K+E ++++MK++
Sbjct: 97 LDLLAKARGITAAENYFVSLPEPSKNHLCYGALLNCYCKELMTEKSEGLMEKMKELSLPL 156
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EKI +L+ EM+ ++ D +T + A AA +DI G++++
Sbjct: 157 SSMPYNSLMTLYTKVGQPEKIPSLIQEMKASNVMLDSYTYNVWMRALAAVNDISGVERVH 216
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKR-NSSNAFELKD--------- 167
+ + Q+ D+ + L +++ + K+E +A K NAF KD
Sbjct: 217 DEMKRGGQVTGDWTTYSNLASIFVDAGLFDKAE--VALKELEKRNAF--KDLTAYQFLIT 272
Query: 168 ---------QLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
++YR+W+ K N Y+ M+ +L+ L D+ GAEK R W Y
Sbjct: 273 LYGRTGNLYEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDLPGAEKCFREWECGCPTY 332
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
D + + LI A+ K +LEKA+ L A +
Sbjct: 333 DIRVANVLIRAYVKLDMLEKAEELKERARRR 363
>gi|297809953|ref|XP_002872860.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
lyrata]
gi|297318697|gb|EFH49119.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
lyrata]
Length = 500
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 127/269 (47%), Gaps = 31/269 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-----------CLFFGVGKAEMVVQEMKDMGFA 58
RL+LI + G+E AE YF++++ ++ C+ KA+ + M D+
Sbjct: 111 RLDLIAKTKGLEAAETYFNSLNDSIKNQSTYGSLLNCYCVEKEEDKAKAHFENMVDLNHV 170
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +M + G EK+ AL++ M++K+I T + + + D+ G++K+
Sbjct: 171 SNSLPFNNLMAMYLRIGQSEKVPALVVAMKQKNITPCDITYSMWIQSCGSLKDLDGVEKV 230
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKD--------- 167
++ ++ + + ++ A L +Y+ + + K+E + + N N ++D
Sbjct: 231 LDEMKAEGEGISSWDTFANLAAIYIKVGLYDKAEEALKSLENKMNP-HIRDCYHFLISLY 289
Query: 168 -------QLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
++YR+W + V N Y+TM+ L KL+D+ G +K W S YD
Sbjct: 290 AGIANASEVYRVWDLLKKRHPNVNNSSYLTMLQALSKLNDIDGIKKIFTEWESTCWTYDM 349
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAETK 248
+ + I ++ K + E+A+++ N A TK
Sbjct: 350 RMANVAISSYLKQNMYEEAEAVFNGAMTK 378
>gi|449479164|ref|XP_004155523.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 201
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 55/79 (69%)
Query: 166 KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSL 225
KD++YR+W Y +K FN GY+ ++ L+KLDD+ GAE+ L+ W S + +DF +P+ +
Sbjct: 10 KDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEWESGDTSFDFKIPNMM 69
Query: 226 IDAHCKNGLLEKAQSLINH 244
I+++C G ++KA++ I+
Sbjct: 70 INSYCTKGFVDKAEAYISR 88
>gi|224063635|ref|XP_002301239.1| predicted protein [Populus trichocarpa]
gi|222842965|gb|EEE80512.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE +F + + +G KAE ++ EM+ +
Sbjct: 144 QLDLIAKVRGVSSAEDFFLRLPNTFKDRRIYGALLNAYVRNRMREKAESLIDEMRGKDYV 203
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+D ++ EM EK+I D ++ I S+ M+++
Sbjct: 204 THALPYNVMMTLYMNINEYDKVDLIISEMNEKNIKLDIYSYNIWLSSCGLQGSADKMEQV 263
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
+S+ + ++ + + M + M L++ E I + + L
Sbjct: 264 FEQMKSDGSINPNWTTFSTMATMYIKMGKFEKAEDCLRRVESRITGRDRIPYHYLLSLYG 323
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YR+W Y + N GY M+ L+++DD++GAEK W S YD
Sbjct: 324 NVGNKEEVYRVWNIYKSIFPSIPNLGYHAMISSLVRMDDIEGAEKIYEEWLSIKTSYDPR 383
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + + A G L+KA+S +H
Sbjct: 384 IANLFMAAFVYQGNLDKAESFFDH 407
>gi|22328859|ref|NP_680735.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146702|sp|Q84JR3.1|PP334_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g21705, mitochondrial; Flags: Precursor
gi|28393142|gb|AAO42004.1| unknown protein [Arabidopsis thaliana]
gi|28827500|gb|AAO50594.1| unknown protein [Arabidopsis thaliana]
gi|332659092|gb|AEE84492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 492
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 125/261 (47%), Gaps = 29/261 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI V+G AE YF+N+ + + +G V K+ + ++MK+MGF
Sbjct: 100 LDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVT 159
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EK+ ++ EM+E+++ D ++ I +A+ A D+ + +
Sbjct: 160 SSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTL 219
Query: 120 NMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFEL----- 165
E + +D+N AV Y+ A+ +LK SE + K +
Sbjct: 220 RDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYAR 279
Query: 166 ---KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W ++ N+ Y+T++ L+K+D + AE+ L W S YDF +
Sbjct: 280 LGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRV 339
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P+++I + + EKA++++
Sbjct: 340 PNTVIRGYIGKSMEEKAEAML 360
>gi|449434959|ref|XP_004135263.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Cucumis sativus]
gi|449478594|ref|XP_004155363.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g60770-like [Cucumis sativus]
Length = 489
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ + G++ AE YF ++ + + L + KAE + +++K++
Sbjct: 99 LDLVAKARGIDAAENYFVSLPESSKNHLSYSSLLNCYCKELLTEKAEALFEKIKELNLPV 158
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M L G +K+ ++ EM+ ++ D +T + A AA +DI G++++I
Sbjct: 159 TPVPYNSLMTLYSKIGRPDKVCTIIQEMKAANVTFDPYTYIVWMRALAALNDISGVERVI 218
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGL------IATKRN-------SSNAFE 164
+ + + + D+ + L +Y+ M +K+ I T+R+ + +
Sbjct: 219 DEMKRD-GVKGDWTTYSNLASIYVNANMFEKAAKALKDLEKINTRRDLIGFQFLITLYGQ 277
Query: 165 LKD--QLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ D ++YR+W+ + N Y+ M+ L KL D+ GAEK + W S + YD +
Sbjct: 278 IGDLTEVYRVWRSLRLAFPRTANISYLNMIQTLTKLKDLPGAEKCFKEWESGSPTYDIRI 337
Query: 222 PSSLIDAHCKNGLLEKAQSLINHA 245
P++LI A+ K GLLEKA +L A
Sbjct: 338 PNALIGAYTKGGLLEKAMALKERA 361
>gi|242057165|ref|XP_002457728.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
gi|241929703|gb|EES02848.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
Length = 530
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 31/269 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI++V G+E AE YF N+ + +G KA + ++M ++GF
Sbjct: 139 RLDLIYKVRGLEAAENYFANLPDPAKNHRTYGALLSCYCSAKMEEKATYLYRQMDELGFW 198
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L K+D+L EM+ K+I D T I ++YAA++ I ++++
Sbjct: 199 SGTLPINNLMSLYMKLDQHRKVDSLFEEMKVKNIKPDSLTCCILMTSYAASNKIDAIEEL 258
Query: 119 I-NMTESNPQMVLD-FNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170
+ M E + + ++ LA + + A + LKK EGLI + + F+ LY
Sbjct: 259 LKEMVEKDVSLGWSAYSTLASIYVNAGQVEKAESALKKLEGLIGAE-DGRQPFDFLMSLY 317
Query: 171 ----------RIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
R+W + V N Y+ M+ L KL+D+ ++ W S YD
Sbjct: 318 ASLGNLSEINRVWDVIKAKFSTVTNISYLGMLHALYKLNDIDRMKQIYMEWESNYQTYDV 377
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAETK 248
L + +I H + G+ E+A++L A+ K
Sbjct: 378 RLTNMMIRGHLRLGMSEEAETLREKAKEK 406
>gi|449432307|ref|XP_004133941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Cucumis sativus]
gi|449525818|ref|XP_004169913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Cucumis sativus]
Length = 537
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 121/266 (45%), Gaps = 33/266 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V G++ AE YF + L+ +G KAE ++++M+ GF
Sbjct: 145 QLDLISKVRGIKSAEEYFLRLPNHLKDRRIYGALLNAYAKGRQREKAENLLEKMRTKGFT 204
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L EK+++L+ EM E SI D ++ I S+ M+++
Sbjct: 205 THPLPFNVMMTLYMNVKEYEKVESLVSEMTENSIQLDIYSYNIWLSSCGLQGSTEKMEEV 264
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSN--------------- 161
+ + + ++ + + +Y+ M +++K+E + +R S
Sbjct: 265 YEQMKQDRTINANWTTFSTMATMYIKMGLMEKAEECL--RRVESRIVGRDRIPYHYLISL 322
Query: 162 --AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
+ K+++YR+W Y + N GY ++ L+++ DV+GAEK W + YD
Sbjct: 323 YGSVGNKEEMYRVWNIYKNVFPTIPNLGYHAIISALIRVGDVEGAEKIYEEWLTVKSTYD 382
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINH 244
+ + I + K G KA+S +H
Sbjct: 383 PRIANLFIGWYVKEGNTSKAESFFDH 408
>gi|297843032|ref|XP_002889397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335239|gb|EFH65656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 524
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 31/272 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ------------CLFFGVGKAEMVVQEMKDMGF 57
RL+LI + G+E AE YF+N+ + C+ GKA+ ++M ++ F
Sbjct: 131 RLDLIAKAKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEGKAKAHFEKMDELNF 190
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
++ MM + EK+ L+ M+++ I+ T I + + +D+ G++K
Sbjct: 191 VNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEK 250
Query: 118 IINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT---KRNSSN----------- 161
II+ + + +N + L ++ + +K+E + + K N +N
Sbjct: 251 IIDEMGKDSEAKTTWNTFSNLAAIFTKAGLYEKAESALKSMEKKMNPNNRDSHHFLISLY 310
Query: 162 -AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
++YR+W+ + R +V N Y+ M+ + KL D+ G +K W SK YD
Sbjct: 311 AGISKGTEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDIDGIKKIFTEWESKCWAYDM 370
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHA-ETKKG 250
L + I+ + K + E+A+ +++ A E KG
Sbjct: 371 RLANIAINTYLKGNMYEEAEKILDGAMEKSKG 402
>gi|255571041|ref|XP_002526471.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534146|gb|EEF35862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 33/266 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+L+ +V GV AE YF +S ++ +G KAE ++++M+ +
Sbjct: 144 QLDLVAKVRGVSSAEDYFMRLSDNVKDRRVYGALLNSYVKARMREKAESLIEKMRKKDYT 203
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+D ++ EM K+I D ++ I S+ + I M+++
Sbjct: 204 THALPFNVMMTLYMNLKEYDKVDMMISEMMAKNIRLDIYSYNIWLSSRGSQGSIERMEEV 263
Query: 119 INM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIA------TKRNSSNAFEL--- 165
+ NP F+ +A + Y+ M L+K+E + T R+ L
Sbjct: 264 YEQMKLDSTINPNWTT-FSTMATM-YIKMGQLEKAEDCLRRVESRITGRDRIPYHYLLSL 321
Query: 166 ------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
K+++YR+W Y + N GY ++ L+++DD++GAEK W YD
Sbjct: 322 YGNVGNKEEIYRVWNIYKSIFATIPNLGYHAIISSLVRMDDIEGAEKIYEEWLPVKSSYD 381
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ + + G L+KA+S +H
Sbjct: 382 PRIGNLLMGWYVRGGNLDKAESFFDH 407
>gi|326507912|dbj|BAJ86699.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 35/263 (13%)
Query: 10 RLNLIFEVHGVEQAEIYF---DNISKLLR--QCLFFGVGKAEMVV------QEMKDMGFA 58
RL+LI +VHG++ AE YF +ISK ++ CL GK + ++MK
Sbjct: 124 RLDLISKVHGIQAAEEYFWSIPDISKSVKTYSCLLNCYGKHGLAYKGLEFYEKMKAKSIV 183
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MIL G EKI + EM E I+ D+F +Y +D+ +K+
Sbjct: 184 PDKLVYNYLMILYQKAGQPEKILSTFEEMRESGISADKFAYFTLIESYITMNDLDAAEKV 243
Query: 119 I-NMTESNPQMVLDFNLLA------VLLYMAMTMLKKSE------------GLIATKRNS 159
+ + + P + L+A L A +KK+E L++ +
Sbjct: 244 LAELQKVAPVHWSLYTLMANNYIKLKLFGKAEVAIKKAEEGMDKADLRSWYALLSLHAHC 303
Query: 160 SNAFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
N+ E+K R+WK T +K N+ Y+ M+ L +DD + ++ + W S + YD
Sbjct: 304 GNSTEVK----RVWKSLKSTFKKCLNRSYLVMLQALSMIDDFESLQQIFQEWQSSHEHYD 359
Query: 219 FGLPSSLIDAHCKNGLLEKAQSL 241
+ + +I A+ G++++A+++
Sbjct: 360 KRIANVVIKAYLDKGMIDEAEAI 382
>gi|225453344|ref|XP_002270492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150
[Vitis vinifera]
Length = 527
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 28/262 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF + L+ +G KAE++++++++ G+A
Sbjct: 133 QLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYA 192
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+ +++ EM K+I D ++ I S+ + + + +
Sbjct: 193 TTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSSCESTERMEQVFEQ 252
Query: 119 INMTES-NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL------ 165
+ + + NP F+ +A + A LKK E I + + +
Sbjct: 253 MKLERTINPNWT-TFSTMATMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYGST 311
Query: 166 --KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
K ++YR W Y + + N GY ++ L+++ D++GAEK W S YD +
Sbjct: 312 GNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIG 371
Query: 223 SSLIDAHCKNGLLEKAQSLINH 244
+ L+ + K G LEKA+ ++H
Sbjct: 372 NLLLGCYVKEGFLEKAEGFLDH 393
>gi|297734632|emb|CBI16683.3| unnamed protein product [Vitis vinifera]
Length = 423
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 28/262 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF + L+ +G KAE++++++++ G+A
Sbjct: 67 QLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYA 126
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+ +++ EM K+I D ++ I S+ + + + +
Sbjct: 127 TTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSSCESTERMEQVFEQ 186
Query: 119 INMTES-NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL------ 165
+ + + NP F+ +A + A LKK E I + + +
Sbjct: 187 MKLERTINPNWT-TFSTMATMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYGST 245
Query: 166 --KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
K ++YR W Y + + N GY ++ L+++ D++GAEK W S YD +
Sbjct: 246 GNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIG 305
Query: 223 SSLIDAHCKNGLLEKAQSLINH 244
+ L+ + K G LEKA+ ++H
Sbjct: 306 NLLLGCYVKEGFLEKAEGFLDH 327
>gi|413953409|gb|AFW86058.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
Length = 626
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 113/235 (48%), Gaps = 29/235 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI + G+ AE YF ++ + + L +G KAE ++++MK++ FA
Sbjct: 182 RLDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFA 241
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M + EK+ +++ +M+ + D FT + A AA DI G++++
Sbjct: 242 FTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERV 301
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD------- 167
I + + ++ D+ + L +Y+ M +K+E + KRN+SN E
Sbjct: 302 IEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYG 361
Query: 168 ------QLYRIWKHYGQ-TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
+++R+W+ + ++ N Y+ M+ +L L D+ AE + W ++++
Sbjct: 362 RTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKEWEARHI 416
>gi|293336604|ref|NP_001168600.1| uncharacterized protein LOC100382384 [Zea mays]
gi|223949449|gb|ACN28808.1| unknown [Zea mays]
Length = 536
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 113/235 (48%), Gaps = 29/235 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI + G+ AE YF ++ + + L +G KAE ++++MK++ FA
Sbjct: 92 RLDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFA 151
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M + EK+ +++ +M+ + D FT + A AA DI G++++
Sbjct: 152 FTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERV 211
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD------- 167
I + + ++ D+ + L +Y+ M +K+E + KRN+SN E
Sbjct: 212 IEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYG 271
Query: 168 ------QLYRIWKHYGQ-TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
+++R+W+ + ++ N Y+ M+ +L L D+ AE + W ++++
Sbjct: 272 RTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKEWEARHI 326
>gi|147803609|emb|CAN75355.1| hypothetical protein VITISV_002476 [Vitis vinifera]
Length = 736
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 28/262 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V GV AE YF + L+ +G KAE++++++++ G+A
Sbjct: 342 QLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYA 401
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+ +++ EM K+I D ++ I S+ + + + +
Sbjct: 402 TTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSSCESTERMEQVFEQ 461
Query: 119 INMTES-NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL------ 165
+ + + NP F+ +A + A LKK E I + + +
Sbjct: 462 MKLERTINPNWT-TFSTMATMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYGST 520
Query: 166 --KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
K ++YR W Y + + N GY ++ L+++ D++GAEK W S YD +
Sbjct: 521 GNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIG 580
Query: 223 SSLIDAHCKNGLLEKAQSLINH 244
+ L+ + K G LEKA+ ++H
Sbjct: 581 NLLLGCYVKEGFLEKAEGFLDH 602
>gi|413953408|gb|AFW86057.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
Length = 596
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 113/235 (48%), Gaps = 29/235 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI + G+ AE YF ++ + + L +G KAE ++++MK++ FA
Sbjct: 152 RLDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFA 211
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M + EK+ +++ +M+ + D FT + A AA DI G++++
Sbjct: 212 FTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERV 271
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD------- 167
I + + ++ D+ + L +Y+ M +K+E + KRN+SN E
Sbjct: 272 IEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYG 331
Query: 168 ------QLYRIWKHYGQ-TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
+++R+W+ + ++ N Y+ M+ +L L D+ AE + W ++++
Sbjct: 332 RTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKEWEARHI 386
>gi|297800434|ref|XP_002868101.1| hypothetical protein ARALYDRAFT_915040 [Arabidopsis lyrata subsp.
lyrata]
gi|297313937|gb|EFH44360.1| hypothetical protein ARALYDRAFT_915040 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 21/240 (8%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
+RL+L+ V G+E+AE +F +I K + + + KAE ++M+++G
Sbjct: 108 ARLHLVENVLGLEEAEKFFKSIPKNMTDYFVYATLLSSYTKSENTLDKAEATFEKMRELG 167
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
F + M+ L + ++ L+ EM+E + D T+ YA I M+
Sbjct: 168 FLLKPSPFNSMISLYGQLQKLDMVEKLVREMQETKVECDSPTVNNVLRVYADTCKIKAME 227
Query: 117 KIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS--EGLIATKRNSSNAFELKDQLYRIWK 174
+ + ++A MA L+ E I N + + + ++YR+W
Sbjct: 228 TFKTWVDEQGIKLEGGTIVA----MAKAYLRSGSIEKAIEMYGNVAGS---EKEVYRLWD 280
Query: 175 HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL 234
Y + KV + GY T++ LLKLD+V+GAEK W + D +PS L+ + G+
Sbjct: 281 EYKKETKVNDNGYRTVLSSLLKLDNVQGAEKIYEEWKPEGPKLDMSIPSLLLSRYYAEGM 340
>gi|125525544|gb|EAY73658.1| hypothetical protein OsI_01545 [Oryza sativa Indica Group]
Length = 522
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 33/270 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI++V G+E AE+YF + + +G KA + ++M ++G +
Sbjct: 130 RLDLIYKVRGIEAAELYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGIS 189
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L G K+ +L EM+ K++ D T + S+YAA + I + ++
Sbjct: 190 SSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEV 249
Query: 119 INMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFELKDQL 169
+ E ++ L ++ + L LY+ A + LKK E LI + F+ L
Sbjct: 250 LKEMEEK-KVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQ-AGRQPFDFLMSL 307
Query: 170 Y----------RIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
Y R+W +KV N Y+ M+ L KL+D ++ +W S YD
Sbjct: 308 YASVGNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYD 367
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
L + + AH +NGL ++A+ L + K
Sbjct: 368 ARLTNMMTRAHLRNGLTKEAELLWEKVKEK 397
>gi|147819856|emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
Length = 494
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 29/269 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
R++L+ + G+ QAE YF+++ + + +G V KA + +++K++ F
Sbjct: 102 RIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMVDKAVELFKKLKELNFV 161
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ M+ L G EK+ +L+ EMEEK I D +T + ++YA+ D ++++
Sbjct: 162 SSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQV 221
Query: 119 INMTESN--PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSS----NAFELKDQLY-- 170
+ + + + LA + A K + L ++N + AF + LY
Sbjct: 222 LEKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYAR 281
Query: 171 --------RIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
R W+ K+ NK Y+ M+ L KL DV G EK + W S YD L
Sbjct: 282 TSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRL 341
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ +++++ ++E+A +L++ + K+G
Sbjct: 342 SNVMLESYLNREMIEEA-NLLSESIAKRG 369
>gi|449438238|ref|XP_004136896.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Cucumis sativus]
gi|449478839|ref|XP_004155431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Cucumis sativus]
Length = 406
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 126/265 (47%), Gaps = 31/265 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQC--------LFFG---VGKAEMVVQEMKDMGFA 58
R++L+ +V GV+ AE YF+ + + C F G KAE + ++MK+
Sbjct: 130 RIDLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKMKESDIP 189
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G EK+ +++ +++++ ++ D FT + S+ AAA +I G+ +I
Sbjct: 190 LTALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAALNIDGVKQI 249
Query: 119 INMTESNP----QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN----AFEL----- 165
+N NP V L+ + + A + +S ++ + S ++L
Sbjct: 250 LNEMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGISQREWITYDLLIILY 309
Query: 166 -----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNW-TSKNLPYD 218
KD++ +IW+ T+ K+ ++ Y+ ++ L LDD+K + + W S +D
Sbjct: 310 AGLGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDFD 369
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLIN 243
+ L++A + GL EKA S +N
Sbjct: 370 ISSCNRLVNAFIEAGLHEKANSFVN 394
>gi|225450579|ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial [Vitis vinifera]
gi|296089781|emb|CBI39600.3| unnamed protein product [Vitis vinifera]
Length = 498
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 127/269 (47%), Gaps = 29/269 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
R++L+ + G+ QAE YF+++ + + +G + KA + +++K++ F
Sbjct: 106 RIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMLDKAVELFKKLKELNFV 165
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ M+ L G EK+ +L+ EMEEK I D +T + ++YA+ D ++++
Sbjct: 166 SSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQV 225
Query: 119 INMTESN--PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSS----NAFELKDQLY-- 170
++ + + + LA + A K + L ++N + AF + LY
Sbjct: 226 LDKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYAR 285
Query: 171 --------RIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
R W+ K+ NK Y+ M+ L KL DV G EK + W S YD L
Sbjct: 286 TSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRL 345
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ +++++ ++E+A +L++ + K+G
Sbjct: 346 SNVMLESYLNREIIEEA-NLLSESIAKRG 373
>gi|115436124|ref|NP_001042820.1| Os01g0301000 [Oryza sativa Japonica Group]
gi|57899052|dbj|BAD87826.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113532351|dbj|BAF04734.1| Os01g0301000 [Oryza sativa Japonica Group]
gi|215694668|dbj|BAG89859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215706899|dbj|BAG93359.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 522
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI++V G+E AE YF + + +G KA + ++M ++G +
Sbjct: 130 RLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDKATDIYRKMDELGIS 189
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L G K+ +L EM+ K++ D T + S+YAA + I + ++
Sbjct: 190 SSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAALNKIDTVGEV 249
Query: 119 INMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFELKDQL 169
+ E ++ L ++ + L LY+ A + LKK E LI + F+ L
Sbjct: 250 LKEMEEK-KVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQ-AGRQPFDFLMSL 307
Query: 170 Y----------RIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
Y R+W +KV N Y+ M+ L KL+D ++ +W S YD
Sbjct: 308 YASVGNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDWESNYENYD 367
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
L + + AH +NGL ++A+ L + K
Sbjct: 368 ARLTNMMTRAHLRNGLTKEAELLWEKVKEK 397
>gi|115436132|ref|NP_001042824.1| Os01g0301700 [Oryza sativa Japonica Group]
gi|14495231|dbj|BAB60950.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113532355|dbj|BAF04738.1| Os01g0301700 [Oryza sativa Japonica Group]
gi|125525550|gb|EAY73664.1| hypothetical protein OsI_01547 [Oryza sativa Indica Group]
gi|125570062|gb|EAZ11577.1| hypothetical protein OsJ_01442 [Oryza sativa Japonica Group]
gi|215713519|dbj|BAG94656.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 504
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 119/266 (44%), Gaps = 41/266 (15%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+L+ +++G+ AE YF ++ + R + K + + MK M
Sbjct: 113 RLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLELYENMKAMNIV 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L T EKI +++M+E I ++F+ + +Y +DI +K+
Sbjct: 173 SDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIESAEKV 232
Query: 119 I-NMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE------------GLIATK 156
+ + E N + ++L A L A LKK+E L++
Sbjct: 233 LKELQEVNS---VPWSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFSWHCLLSHY 289
Query: 157 RNSSNAFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
NS N E+K RIW+ +K N+ Y+ M+ L KLDD ++ + W S +
Sbjct: 290 ANSGNLSEVK----RIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESSHE 345
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSL 241
YD +P+ +I A+ G+++KA+++
Sbjct: 346 HYDMKIPNIIIQAYLDKGMVDKAEAM 371
>gi|357131430|ref|XP_003567340.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Brachypodium distachyon]
Length = 612
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
SRL+L+ +VHG+ +AE + DNI LR + + V KAE V +MKD+GF
Sbjct: 217 SRLDLMAKVHGIYKAEKFIDNIPASLRGEIVYRTLLANCVAEVNVKKAEEVFNKMKDLGF 276
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T++ ++L Y +++KI ++ ME++ + FT + A+ DI GM+K
Sbjct: 277 PV-TVFAINQLLLLYKRVDKKKISDVLTMMEKEDVKPSLFTYKLLVDTKGASRDIEGMEK 335
Query: 118 IINMTES---NPQMVLDFNLLAVLLY-----MAMTMLKKSEGLIATKRNSSN------AF 163
++ E+ P ++L + ++ A +L+ EG + RN+ AF
Sbjct: 336 VVQSMEAEGITPDLLLQATIAKHYIFGGHREKAEAILESMEGDMKENRNACKMVMPLYAF 395
Query: 164 -ELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
KD + RIWK ++ ++ + +L DV+ AE+ N
Sbjct: 396 LGKKDDVERIWKVCQSNTRL--DECLSAIEAFGRLGDVEKAEEVFGN 440
>gi|115457716|ref|NP_001052458.1| Os04g0320200 [Oryza sativa Japonica Group]
gi|32490390|emb|CAE04700.1| OSJNBa0041M06.2 [Oryza sativa Japonica Group]
gi|38344779|emb|CAE01505.2| OSJNBb0026L04.10 [Oryza sativa Japonica Group]
gi|113564029|dbj|BAF14372.1| Os04g0320200 [Oryza sativa Japonica Group]
gi|125543501|gb|EAY89640.1| hypothetical protein OsI_11170 [Oryza sativa Indica Group]
gi|125589896|gb|EAZ30246.1| hypothetical protein OsJ_14297 [Oryza sativa Japonica Group]
gi|215767374|dbj|BAG99602.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 524
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 135/309 (43%), Gaps = 70/309 (22%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+L+ + G+ AE YF ++ + + L +G KAE ++ +MK++ FA
Sbjct: 92 RLDLVAKSRGIAAAEKYFLDLPETSKTHLTYGALLNCYCKDLMTEKAEALMGKMKELNFA 151
Query: 59 RRTIYCYIMMILNYLTGNR-EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T CY ++ Y N+ EK+ +++ +M+ + D +T + A AA DI G+++
Sbjct: 152 -FTAMCYNSLMTLYTKVNQHEKVPSVIQDMKADDVLPDIYTYNVWMRALAARVDIKGVER 210
Query: 118 IINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD------ 167
+I + + ++ D+ + L +Y+ + +K+E + K N+SN E
Sbjct: 211 VIEEMKRDGRVTPDWTTYSNLASIYVDAGLFEKAEAALKELEKWNTSNDLEAYQFLITLY 270
Query: 168 -------QLYRIWK--HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK--NLP 216
+++R+W+ Q R+ N Y+ M+ L L D+ GAE + W ++ N P
Sbjct: 271 ARTQNLVEVHRVWRSLKRNQPRRA-NMSYLNMIQALANLKDLPGAEACFKEWEAQYINPP 329
Query: 217 -----------------------------------YDFGLPSSLIDAHCKNGLLEKAQSL 241
YD + +++I A+ G+ +KA ++
Sbjct: 330 KTNTKAPGTAETSSNESDVKATKDKGTDGELKHPKYDIRVANAMIKAYITEGMFDKAVAV 389
Query: 242 INHAETKKG 250
A+ + G
Sbjct: 390 KKRAKMRGG 398
>gi|255545872|ref|XP_002513996.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547082|gb|EEF48579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 496
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 128/274 (46%), Gaps = 36/274 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNI--SKLLRQCLFFG----------VGKAEMVVQEMKDMGF 57
RL LI +V+G+E+AE YF+ I + R+ F V KAE ++ ++ ++G
Sbjct: 103 RLELIIKVNGIEEAEEYFNFIPHDSVTRKAASFALLHGYVKVKDVVKAEALMMKLYNLGL 162
Query: 58 ARRTIYCYI---MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
+ CY MM L T EK+ ++ +M+ I + + + S+Y S +
Sbjct: 163 ---IVNCYPFNEMMKLYMATSQYEKVALVIDQMKRNKIALNLLSYNLWMSSYGEVSKVVK 219
Query: 115 MDKIINMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKR-------- 157
++ + ++ + + ++ LA L + A+ LK +E +++T
Sbjct: 220 VELVYKEMVNDDNVEVGWSTLATLANIYTKAGIVDKALLALKNAEKILSTSHLLGYFFLM 279
Query: 158 NSSNAFELKDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++ + K+ + R+W+ G ++ YM ++ L+K+ D+ AEK R+W
Sbjct: 280 TQYSSLKNKEGVQRLWEACKGVNGRITCANYMCVLSCLVKVGDLLEAEKVFRDWELNCRK 339
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
YD + + L+ A+ + GL+ KA+SL H + G
Sbjct: 340 YDIRVSNVLLGAYVRKGLMNKAESLHLHTLDRGG 373
>gi|357110627|ref|XP_003557118.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Brachypodium distachyon]
Length = 536
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL+L+ + G+ AE YF ++ + + L +G KAE ++++MK++ FA
Sbjct: 92 RLDLVAKSRGIAAAEKYFMDLPETSKTHLTYGALLNCYCKESMTEKAEALMEKMKELNFA 151
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L EK+ +++ +M+ + D +T + + AA DI G++++
Sbjct: 152 FTAMSYNSLMTLYTKVNQPEKVPSIIQDMKADDVLPDVYTYNVWMRSLAARQDISGVERV 211
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD------- 167
I + + ++V D+ + L +Y+ + +K+E + KRN+SN E
Sbjct: 212 IEEMKRDGRVVPDWTTYSNLASIYVEAGLFEKAEAALKELEKRNTSNDLEAYQFLITLYG 271
Query: 168 ------QLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
+++ +W+ + RK N Y+ M+ +L L D+ AE + W ++
Sbjct: 272 RTQNLVEVHHVWRSLKRNNPRKA-NMSYLNMIQVLANLKDLPAAEACFKEWEAR 324
>gi|116309055|emb|CAH66166.1| H0107B07.5 [Oryza sativa Indica Group]
Length = 524
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 33/235 (14%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL+L+ + G+ AE YF ++ + + L +G KAE ++ +MK++ FA
Sbjct: 92 RLDLVAKSRGIAAAEKYFLDLPETSKTHLTYGALLNCYCKDLMTEKAEALMGKMKELNFA 151
Query: 59 RRTIYCYIMMILNYLTGNR-EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T CY ++ Y N+ EK+ +++ +M+ + D +T + A AA DI G+++
Sbjct: 152 -FTAMCYNSLMTLYTKVNQHEKVPSVIQDMKADDVLPDIYTYNVWMRALAARVDIKGVER 210
Query: 118 IINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD------ 167
+I + + ++ D+ + L +Y+ + +K+E + K N+SN E
Sbjct: 211 VIEEMKRDGRVTPDWTTYSNLASIYVDAGLFEKAEAALKELEKWNTSNDLEAYQFLITLY 270
Query: 168 -------QLYRIWK--HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
+++R+W+ Q R+ N Y+ M+ L L D+ GAE + W ++
Sbjct: 271 ARTQNLVEVHRVWRSLKRNQPRRA-NMSYLNMIQALANLKDLPGAEACFKEWEAQ 324
>gi|359480173|ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Vitis vinifera]
Length = 506
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 37/269 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+L+ + G+ AE YF+N+S + L +G KA + ++M ++ FA
Sbjct: 117 RLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFA 176
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +M L+ G E + L+ EM+++SI+ D FT I +YA +DI G +++
Sbjct: 177 STSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERV 236
Query: 119 INMTESNPQMVLDF----NLLAVLLYMAMTMLKKSEGLIATKR-------NSSNAFELKD 167
+ + + L + NL AV Y+ + +K+E +A K+ + A+
Sbjct: 237 LEEIKRENEDKLSWTTYSNLAAV--YVNARLFEKAE--LALKKLEEEMGFHDRLAYHFLI 292
Query: 168 QLY----------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
LY R+W K N Y M+ L L+DV G + W S
Sbjct: 293 SLYAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFS 352
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
+D L + + A +++ A+S++ A
Sbjct: 353 FDVRLANVAVRAFLGWDMIKDAESILYEA 381
>gi|255548417|ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545745|gb|EEF47249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 37/270 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ------------CLFFGVGKAEMVVQEMKDMGF 57
RL+LI + G+ AE YF+ +S + C KA + QEM + F
Sbjct: 111 RLDLIGKARGIAAAEDYFNGLSPSAKNHHTSYGALLNCYCKELMSDKALALFQEMDEKKF 170
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
++ +M + G EK+ L+ EM+++ ++ FT I +Y +D G+D+
Sbjct: 171 LYSSLPFNNLMSMYMRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSYGCLNDFQGVDR 230
Query: 118 II-----NMTESNPQMVLDFNLLAVLLYM-----AMTMLKKSEGLIATKRNSSNAFELK- 166
++ + + N Q NL + L A + LKK E ++ + + F +
Sbjct: 231 VLREIVNDGGKDNLQWTTYSNLATIYLKAGIFEKAESALKKLEAIMGFRNREAYHFLISI 290
Query: 167 -------DQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
+++ R+W G + FN Y+ M+ L KL DV+G K R W S
Sbjct: 291 YAGTGNSNEVNRVW---GLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFREWESGCT 347
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
YD + + I ++ + E+A+ + + A
Sbjct: 348 NYDMRIANVAIRVFLQHDMYEEAELIFDDA 377
>gi|297743994|emb|CBI36964.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 37/269 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+L+ + G+ AE YF+N+S + L +G KA + ++M ++ FA
Sbjct: 156 RLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFA 215
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +M L+ G E + L+ EM+++SI+ D FT I +YA +DI G +++
Sbjct: 216 STSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERV 275
Query: 119 INMTESNPQMVLDF----NLLAVLLYMAMTMLKKSEGLIATKR-------NSSNAFELKD 167
+ + + L + NL AV Y+ + +K+E +A K+ + A+
Sbjct: 276 LEEIKRENEDKLSWTTYSNLAAV--YVNARLFEKAE--LALKKLEEEMGFHDRLAYHFLI 331
Query: 168 QLY----------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
LY R+W K N Y M+ L L+DV G + W S
Sbjct: 332 SLYAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFS 391
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
+D L + + A +++ A+S++ A
Sbjct: 392 FDVRLANVAVRAFLGWDMIKDAESILYEA 420
>gi|357142115|ref|XP_003572464.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
mitochondrial-like [Brachypodium distachyon]
Length = 546
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 35/270 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
RL L+ +V+G+E AE YF ++ ++ + + K + ++MK M
Sbjct: 158 RLGLVCKVNGLEAAEEYFWSLPEMFKSIKTYSSLLNCYAEHRKADKGLELFEKMKAMNIT 217
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L T EKI +M E + D FT + +Y +D+ +K
Sbjct: 218 PSTLVYNNLMDLYLKTDQPEKIPTTFEQMRENHVRTDSFTYYMLTQSYIMVNDLKSAEKF 277
Query: 119 INMTE-SNPQMVLDFNLLA------VLLYMAMTMLKKSE------------GLIATKRNS 159
+ E S P + +LA A+ LKK+E L++ +S
Sbjct: 278 VEELEKSTPVPWSLYTVLANNYNKLAQFDKAVLALKKAEEVMDRSEISAWHNLLSLYASS 337
Query: 160 SNAFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
N+ E+K R+W+ K N+ Y+ M+ L KLDD ++ + W S + YD
Sbjct: 338 GNSSEVK----RVWESLKSAFTKCINRSYLVMLSALKKLDDFDSLQQLFQEWESTHERYD 393
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
+ + +I+A+ + ++A++L A K
Sbjct: 394 MRITNVMIEAYLAKDMTDEAEALRQTAMAK 423
>gi|15217734|ref|NP_171739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173342|sp|Q9FZ24.1|PPR4_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02370, mitochondrial; Flags: Precursor
gi|9857533|gb|AAG00888.1|AC064879_6 Hypothetical protein [Arabidopsis thaliana]
gi|332189300|gb|AEE27421.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 30/265 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ------------CLFFGVGKAEMVVQEMKDMGFA 58
L+LI + G+E AE YF+N+ + C+ KA+ + M ++ F
Sbjct: 145 LDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFV 204
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ MM + EK+ L+ M+++ I+ T I + + +D+ G++KI
Sbjct: 205 NNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKI 264
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT---KRNSSN------------ 161
I+ + + +N + L +Y + +K++ + + K N +N
Sbjct: 265 IDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYA 324
Query: 162 AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
++YR+W+ + R +V N Y+ M+ + KL D+ G +K W SK YD
Sbjct: 325 GISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMR 384
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHA 245
L + I+ + K + E+A+ +++ A
Sbjct: 385 LANIAINTYLKGNMYEEAEKILDGA 409
>gi|223974825|gb|ACN31600.1| unknown [Zea mays]
Length = 515
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 35/265 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL LI++V G+E AE YF N+ + +G KA + ++M ++G
Sbjct: 123 RLELIYKVRGLEAAENYFANLPDPAKNHRTYGSLLSCYCSAKMEEKATNLYRQMDELGIW 182
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T+ +M L K+ +L EM+ K++ + T I ++YAA + I ++++
Sbjct: 183 SSTLPINNLMSLYMKLDQYRKVVSLFEEMKLKNVKPNSLTCCILMTSYAALNKIDDIEEL 242
Query: 119 I-NMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFELKDQ 168
+ M E + + L ++ + L +Y+ A + LKK EGLI+ + F+
Sbjct: 243 LKEMVEKD--VTLGWSAYSTLASIYVNAGQFGKAESALKKLEGLISA-HDDRQPFDFLLS 299
Query: 169 LY----------RIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
LY R+W + KV N Y+ M+ L KL+D+ ++ W S +
Sbjct: 300 LYASLGNLSEVNRVWNVIKSKFSKVTNTSYLGMLHALYKLNDIDRMKQIYMEWESNYETF 359
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLI 242
D L + +I +H K G+ E+A+ L+
Sbjct: 360 DVKLTNMMIRSHLKVGMTEEAEMLV 384
>gi|302142021|emb|CBI19224.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 126/270 (46%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFD---NISKLLRQCLFF--------GVGKAEMVVQEMKDMGFA 58
RL LI ++ + +AE YF+ N S CL + KAE ++ ++ D+G
Sbjct: 112 RLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIEKAEALMLKLNDLGLT 171
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
MM L T E++ ++L+M++ I + + + SA + S + + +
Sbjct: 172 VSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSEVSGLASAEMV 231
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI--ATKRNSSN------------- 161
+ + + ++ L+ L +Y+ ++KK+ + A K+ S++
Sbjct: 232 YKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLSAHNRLGYFFLITMYA 291
Query: 162 AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+ K+++ R+W+ + ++ + YM ++ L+KL D+ AE+ R W SK YD
Sbjct: 292 SLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFREWESKCWKYDIR 351
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ + L+ A+ + G ++KA+SL H + G
Sbjct: 352 VSNVLLGAYMRTGSMDKAESLHLHTLERGG 381
>gi|326505170|dbj|BAK02972.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 510
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 122/263 (46%), Gaps = 31/263 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFGV-GKAEMVVQEMKDMGFAR 59
L+L+ +V G+ AE +F+++ + LL + G KAE +++EM D G+
Sbjct: 113 LDLVAKVRGLASAEKFFEDVPERAKGPSTCNSLLHAYVQHGARDKAEAMLKEMADAGYLT 172
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ MM L G EK+ ++ E+ +I D T I + + + + +K+
Sbjct: 173 CALPFNHMMSLYMSVGELEKVPEMIKELRRYTIP-DLVTYNIWLTYCSRKNSVKSAEKVF 231
Query: 120 NMTESNPQMVLD---FNLLAVLLYMAMTMLKKSEGLIATKRNSSN--------------A 162
++ + + ++V D F+LLA + A +K + L+ ++ +S +
Sbjct: 232 DLMKDD-RVVPDWMTFSLLASIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTMYAS 290
Query: 163 FELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ L R+W QT RK + Y M+ L + D+ AE W S++ D +
Sbjct: 291 LSDRGNLDRVWSKMRQTFRKFSDAEYKCMLTSLTRFGDIAAAEFVYGEWESQSGTKDSRI 350
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
P++++ + KNG +EKA+S + +
Sbjct: 351 PNTILSFYIKNGEMEKAESFLQY 373
>gi|225459164|ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Vitis vinifera]
Length = 475
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 126/270 (46%), Gaps = 29/270 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFD---NISKLLRQCLFF--------GVGKAEMVVQEMKDMGFA 58
RL LI ++ + +AE YF+ N S CL + KAE ++ ++ D+G
Sbjct: 85 RLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIEKAEALMLKLNDLGLT 144
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
MM L T E++ ++L+M++ I + + + SA + S + + +
Sbjct: 145 VSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSEVSGLASAEMV 204
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI--ATKRNSSN------------- 161
+ + + ++ L+ L +Y+ ++KK+ + A K+ S++
Sbjct: 205 YKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLSAHNRLGYFFLITMYA 264
Query: 162 AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+ K+++ R+W+ + ++ + YM ++ L+KL D+ AE+ R W SK YD
Sbjct: 265 SLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFREWESKCWKYDIR 324
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ + L+ A+ + G ++KA+SL H + G
Sbjct: 325 VSNVLLGAYMRTGSMDKAESLHLHTLERGG 354
>gi|17529324|gb|AAL38889.1| unknown protein [Arabidopsis thaliana]
Length = 537
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 119/265 (44%), Gaps = 30/265 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ------------CLFFGVGKAEMVVQEMKDMGFA 58
L+LI + G+E AE YF+N+ + C+ KA+ + M ++ F
Sbjct: 145 LDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFV 204
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ MM + EK+ L+ ++++ I+ T I + + +D+ G++KI
Sbjct: 205 NNSLPFNNMMSMYMRLSQPEKVPVLVDAIKQRGISPCGVTYSIWMQSCGSLNDLDGLEKI 264
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT---KRNSSN------------ 161
I+ + + +N + L +Y + +K++ + + K N +N
Sbjct: 265 IDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYA 324
Query: 162 AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
++YR+W+ + R +V N Y+ M+ + KL D+ G +K W SK YD
Sbjct: 325 GISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMR 384
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHA 245
L + I+ + K + E+A+ +++ A
Sbjct: 385 LANIAINTYLKGNMYEEAEKILDGA 409
>gi|357151797|ref|XP_003575907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 31/263 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFGV-GKAEMVVQEMKDMGFAR 59
L+L+ +V G+ AE +F+++ + LL + GV KAE +++EM D G+
Sbjct: 105 LDLVAKVRGLASAEKFFEDVPERAKGPSTCNALLHAYVQNGVRDKAEAMLREMADAGYLT 164
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ MM + +G EK+ ++ E+ +I D T I + + + + +K+
Sbjct: 165 CALPFNHMMSMYMSSGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSRKNSVKTAEKVF 223
Query: 120 NMTESN---PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN--------------A 162
++ + + P + F+L+A + A +K + L+ ++ +S +
Sbjct: 224 DLMKDDKVFPDW-MTFSLMASIYINAGLHVKGRDALVEMEKRASRKERTAYSSLLTLYAS 282
Query: 163 FELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ L R+W + RK + Y M+ L + D+ AE W S++ D +
Sbjct: 283 LSDRGNLDRVWSKMREIFRKFSDTEYKCMLTSLTRFGDITAAESVYSEWESESGTRDSRI 342
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
P++++ H KNG +E A+S + H
Sbjct: 343 PNTILSFHIKNGKMEMAESFLQH 365
>gi|11138066|dbj|BAB17739.1| putative DNA-binding protein [Oryza sativa Japonica Group]
Length = 591
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 34/262 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SR++L+ +VHG+ +AE Y +N+ LL C+ V K E V +MKD+GF
Sbjct: 195 SRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDLGF 254
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++K+ ++ ME++++ FT + AA DI M+K
Sbjct: 255 PVTVFSCNQLLLL-YKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDMEK 313
Query: 118 IINMTESN---PQMVLDFNLLAVLLY-----MAMTMLKKSEGLIATKRNSSNAFEL---- 165
+I +++ P +++ + ++ A +L++ EG + S+ F L
Sbjct: 314 VIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPLYA 373
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW--TSKNLPYDF 219
K + RIWK ++ M+ + KL DV+ AE+ N T K L +++
Sbjct: 374 FLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSFEY 431
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
++++ + L +K + L
Sbjct: 432 Y--NAMLKVYANKKLFDKGKEL 451
>gi|297596551|ref|NP_001042753.2| Os01g0280400 [Oryza sativa Japonica Group]
gi|255673117|dbj|BAF04667.2| Os01g0280400, partial [Oryza sativa Japonica Group]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 34/262 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SR++L+ +VHG+ +AE Y +N+ LL C+ V K E V +MKD+GF
Sbjct: 30 SRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDLGF 89
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++K+ ++ ME++++ FT + AA DI M+K
Sbjct: 90 PVTVFSCNQLLLL-YKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDMEK 148
Query: 118 IINMTESN---PQMVLDFNLLAVLLY-----MAMTMLKKSEGLIATKRNSSNAFEL---- 165
+I +++ P +++ + ++ A +L++ EG + S+ F L
Sbjct: 149 VIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPLYA 208
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW--TSKNLPYDF 219
K + RIWK ++ M+ + KL DV+ AE+ N T K L +++
Sbjct: 209 FLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSFEY 266
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
++++ + L +K + L
Sbjct: 267 Y--NAMLKVYANKKLFDKGKEL 286
>gi|15220095|ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42572199|ref|NP_974190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|145327755|ref|NP_001077853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262222|sp|Q9C977.1|PP135_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g80270, mitochondrial; Flags: Precursor
gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical protein; 8785-10851 [Arabidopsis thaliana]
gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis thaliana]
gi|20259918|gb|AAM13306.1| unknown protein [Arabidopsis thaliana]
gi|332198258|gb|AEE36379.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332198259|gb|AEE36380.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332198260|gb|AEE36381.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 33/272 (12%)
Query: 1 MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVV 49
MT++ Y SRL+L ++ G+E+ E I K LL C+ G V K+E+V
Sbjct: 194 MTERDY-ASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVF 252
Query: 50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
+MKD+GF C M++L+ +R+KI ++L ME+++I T I A
Sbjct: 253 NKMKDLGFPLSGFTCDQMLLLHKRI-DRKKIADVLLLMEKENIKPSLLTYKILIDVKGAT 311
Query: 110 SDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG--LIATKRN 158
+DI GM++I+ T + + LDF A+ L A +LK+ EG L A +R
Sbjct: 312 NDISGMEQILE-TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRA 370
Query: 159 SSNAFEL------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212
+ + +D++ RIWK +++ F + + KL+ V+ AE
Sbjct: 371 FKDLLSIYASLGREDEVKRIWK-ICESKPYFEESLAAIQA-FGKLNKVQEAEAIFEKIVK 428
Query: 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
+ S L+ + + +L K + L+
Sbjct: 429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKR 460
>gi|56783681|dbj|BAD81093.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|56784204|dbj|BAD81589.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|125569936|gb|EAZ11451.1| hypothetical protein OsJ_01319 [Oryza sativa Japonica Group]
Length = 611
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 34/262 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SR++L+ +VHG+ +AE Y +N+ LL C+ V K E V +MKD+GF
Sbjct: 215 SRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDLGF 274
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++K+ ++ ME++++ FT + AA DI M+K
Sbjct: 275 PVTVFSCNQLLLL-YKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDMEK 333
Query: 118 IINMTESN---PQMVLDFNLLAVLLY-----MAMTMLKKSEGLIATKRNSSNAFEL---- 165
+I +++ P +++ + ++ A +L++ EG + S+ F L
Sbjct: 334 VIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPLYA 393
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW--TSKNLPYDF 219
K + RIWK ++ M+ + KL DV+ AE+ N T K L +++
Sbjct: 394 FLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSFEY 451
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
++++ + L +K + L
Sbjct: 452 Y--NAMLKVYANKKLFDKGKEL 471
>gi|297842839|ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
lyrata]
gi|297335142|gb|EFH65560.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
lyrata]
Length = 597
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 32/264 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SRL+L ++ G+E E Y I K LL C+ G V K+E+V MKD+GF
Sbjct: 202 SRLDLTVKIRGLENGEAYMQKIPKSFKGEVIYRTLLANCVAAGNVKKSELVFNRMKDLGF 261
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C M++L Y +R+KI ++L ME++++ T I A +DI GM++
Sbjct: 262 PLSGFTCDQMLLL-YKRIDRKKIADVLLLMEKENVKPSLLTYKILIDVKGATNDISGMEQ 320
Query: 118 IINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG--LIATKRNSSNAFEL- 165
I+ T + + DF A+ L A +LK+ EG L A +R + +
Sbjct: 321 ILE-TMKDEGVQPDFQTQALTAKHYSGAGLKEKAEKVLKEMEGESLEANRRAFKDLLSIY 379
Query: 166 -----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+D++ RIWK +++ F++ + + KL+ V+ AE +
Sbjct: 380 ASLGREDEVTRIWK-ICESKPYFDES-LAAIHAFGKLNKVQEAEAIFEKIVTMGRRASSN 437
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
S L+ + + +L K + L+
Sbjct: 438 TYSVLLRVYVDHKMLSKGKDLVKR 461
>gi|224064562|ref|XP_002301516.1| predicted protein [Populus trichocarpa]
gi|222843242|gb|EEE80789.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 42/277 (15%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-----------CLFFGVGKAEMVVQEMKDMGFAR 59
L+L + G+ AE YFDN+ ++ C KA + ++M M
Sbjct: 73 LDLTAKTKGIAAAENYFDNLPPSVQNHVTYSTLLNCYCKELMSEKALTLFEKMDKMKLLS 132
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L+ G EK+ ++ EM+++ ++ FT I +Y +D G+ +++
Sbjct: 133 TSMPFNNLMTLHMRLGQPEKVLGIVQEMKQRGVSPGTFTYNIWMQSYGCLNDFEGVQRVL 192
Query: 120 NMTESNPQMVLDF----NLLAV-----LLYMAMTMLKKSEGLIATKRNSS---------- 160
+ +++ + + NL + L A + L+K E I R+
Sbjct: 193 DEMKTDGKENFSWTTYSNLATIYVKAGLFDKAESALRKLEEQIECGRDCDFQKKRRHDAD 252
Query: 161 -NAFELKDQLY----------RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLR 208
A+ LY R+W + R N Y+ ++ L KL DV+G K +
Sbjct: 253 REAYHFLISLYAGTSNLSEVHRVWNSLKSSFRTTTNISYLNVLQALAKLKDVEGILKCFK 312
Query: 209 NWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
W S YD GL + I A ++ + E+A S+ + A
Sbjct: 313 EWESSCHSYDMGLANVAIRACLEHDMYEEAASIFDEA 349
>gi|226530677|ref|NP_001151760.1| tetratricopeptide-like helical [Zea mays]
gi|195649553|gb|ACG44244.1| tetratricopeptide-like helical [Zea mays]
gi|223942137|gb|ACN25152.1| unknown [Zea mays]
gi|413916645|gb|AFW56577.1| Tetratricopeptide-like helical [Zea mays]
Length = 501
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 31/263 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFGVG-KAEMVVQEMKDMGFAR 59
L+L+ +V G+ A +F+++ + LL + G KAE ++ EM +G+
Sbjct: 106 LDLVAKVRGLASATKFFEDMPERAKGPSTCNALLHAYVQNGAREKAEAMLAEMARVGYLT 165
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ MM L TG E++ ++ E+ ++ D T I + + + +K+
Sbjct: 166 CALPFNHMMSLYMATGELERVPEMIKELRRYTLP-DLVTYNIWLTYCSKKDSVKSAEKVF 224
Query: 120 NMTESN---PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN--------------A 162
+ + + P + F+LL + A ++ L+ ++ +S +
Sbjct: 225 GLMKDDCVVPDW-MTFSLLGSIYINAGLHVEGRNALVEMEKRASRKERAAYSSLLTLYAS 283
Query: 163 FELKDQLYRIW-KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ L R+W K G RK + Y M+ LL+ DD+ AE W S + D +
Sbjct: 284 LSDRGNLDRVWNKMRGTFRKFSDTEYKCMLTSLLRFDDIAAAESIFSEWESTSGTRDSRI 343
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
P++++ + KNG+++KA+S ++H
Sbjct: 344 PNTILSYYIKNGMIKKAESFLDH 366
>gi|242091818|ref|XP_002436399.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
gi|241914622|gb|EER87766.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
Length = 536
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 29/234 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI + G+ AE YF ++ + + L +G KAE ++ +M ++ FA
Sbjct: 93 LDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCKELMTEKAESLMAKMSELNFAF 152
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M + EK+ ++ M+ + FT + A AA +DI G++++I
Sbjct: 153 TAMPFNSLMTMYTKVNQPEKVPGIIQYMKADDVLPHVFTYNVWMRALAALNDIPGVERVI 212
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA--TKRNSSNAFELKD-------- 167
+ + ++ D+ + L +Y+ + +K+E + KRN+SN E
Sbjct: 213 EEMKRDGRVAPDWTTYSNLASIYVDAGLFEKAEAALKELEKRNTSNDVEAYQFLITLYGR 272
Query: 168 -----QLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
+++R+W+ + ++ N Y+ M+ +L L D+ AE + W ++++
Sbjct: 273 TQNLVEVHRVWRSLKRNNPRMANMSYLNMIQVLANLKDLPAAEACFKEWEARHI 326
>gi|125536853|gb|EAY83341.1| hypothetical protein OsI_38557 [Oryza sativa Indica Group]
Length = 444
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 122/263 (46%), Gaps = 31/263 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFGV-GKAEMVVQEMKDMGFAR 59
L+L+ +V G+ AE +F+++ + LL + G KAE +++EM G+
Sbjct: 48 LDLVAKVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDKAEAMLEEMAKAGYLT 107
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ MM L +G EK+ ++ E+ +I D T I + + + + +K+
Sbjct: 108 CALPFNHMMSLYMSSGELEKVPEMIKELRRYTIP-DLVTYNIWLTYCSKKNSVKAAEKVY 166
Query: 120 NMTESNPQMVLD---FNLLAVLLYMAMTMLKKSEGLIATKRNSSN--------------A 162
++ + + ++V D F+LL + A +K + L+ ++ +S +
Sbjct: 167 DLMK-DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTLYAS 225
Query: 163 FELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ L R+W+ +T RK + Y M+ L + D+ AE W S + D +
Sbjct: 226 LSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDSRI 285
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
P++++ + KNG++EKA+ ++H
Sbjct: 286 PNTILAFYIKNGMMEKAEGFLDH 308
>gi|108862755|gb|ABA99305.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215704853|dbj|BAG94881.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215712260|dbj|BAG94387.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 122/263 (46%), Gaps = 31/263 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFGV-GKAEMVVQEMKDMGFAR 59
L+L+ +V G+ AE +F+++ + LL + G KAE +++EM G+
Sbjct: 118 LDLVAKVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDKAEAMLEEMAKAGYLT 177
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ MM L +G EK+ ++ E+ +I D T I + + + + +K+
Sbjct: 178 CALPFNHMMSLYMSSGELEKVPEMIKELRRYTI-PDLVTYNIWLTYCSKKNSVKAAEKVY 236
Query: 120 NMTESNPQMVLD---FNLLAVLLYMAMTMLKKSEGLIATKRNSSN--------------A 162
++ + + ++V D F+LL + A +K + L+ ++ +S +
Sbjct: 237 DLMK-DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTLYAS 295
Query: 163 FELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ L R+W+ +T RK + Y M+ L + D+ AE W S + D +
Sbjct: 296 LSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDSRI 355
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
P++++ + KNG++EKA+ ++H
Sbjct: 356 PNTILAFYIKNGMMEKAEGFLDH 378
>gi|255647669|gb|ACU24296.1| unknown [Glycine max]
Length = 484
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 29/267 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+L+ + GV+ AE +F + + +G KA M ++G+
Sbjct: 101 QLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGALLNCYCKELMKDKALSHFDTMDELGYV 160
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M + L G +K+ L+ M++++I FT I ++ A+++D+ G +++
Sbjct: 161 TNLAFNNVMTLFMKL-GEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSNDLGGAERV 219
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI-----ATKRNSSNAFELKDQLY- 170
++ + + ++ + L +Y+ +K+E ++ K +A+ LY
Sbjct: 220 YEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVKPKQRDAYHCLLGLYA 279
Query: 171 ---------RIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
R+W V N Y+ M+ L +L+D++G K + W + + YD L
Sbjct: 280 GTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEASCVSYDARL 339
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETK 248
S + AH +LE+A+ + A +
Sbjct: 340 VSVCVSAHLNQNMLEEAELVFEEASRR 366
>gi|125525413|gb|EAY73527.1| hypothetical protein OsI_01409 [Oryza sativa Indica Group]
Length = 611
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 121/262 (46%), Gaps = 34/262 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SR++L+ +VHG+ +AE Y +N+ LL C+ V K E V +MKD+GF
Sbjct: 215 SRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMKDLGF 274
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++K+ ++ ME++++ FT + A DI M+K
Sbjct: 275 PVTVFSCNQLLLL-YKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGATRDIEDMEK 333
Query: 118 IINMTESN---PQMVLDFNLLAVLLY-----MAMTMLKKSEGLIATKRNSSNAFEL---- 165
+I +++ P +++ + ++ A +L++ EG + S+ F L
Sbjct: 334 VIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFVLPLYA 393
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW--TSKNLPYDF 219
K + RIWK ++ M+ + KL DV+ AE+ N T K L +++
Sbjct: 394 FLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFENMFKTWKTLSFEY 451
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
++++ + L +K + L
Sbjct: 452 Y--NAMLKVYANKKLFDKGKEL 471
>gi|356536682|ref|XP_003536865.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Glycine max]
Length = 593
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 29/267 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+L+ + GV+ AE +F + + +G KA M ++G+
Sbjct: 101 QLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGALLNCYCKELMKDKALSHFDTMDELGYV 160
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M + L G +K+ L+ M++++I FT I ++ A+++D+ G +++
Sbjct: 161 TNLAFNNVMTLFMKL-GEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSNDLGGAERV 219
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI-----ATKRNSSNAFELKDQLY- 170
++ + + ++ + L +Y+ +K+E ++ K +A+ LY
Sbjct: 220 YEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVKPKQRDAYHCLLGLYA 279
Query: 171 ---------RIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
R+W V N Y+ M+ L +L+D++G K + W + + YD L
Sbjct: 280 GTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEASCVSYDARL 339
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETK 248
S + AH +LE+A+ + A +
Sbjct: 340 VSVCVSAHLNQNMLEEAELVFEEASRR 366
>gi|298572014|gb|ADI88004.1| PPR protein [Silene latifolia]
gi|298572038|gb|ADI88016.1| PPR protein [Silene latifolia]
Length = 224
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAEM++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|357442213|ref|XP_003591384.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480432|gb|AES61635.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 119/256 (46%), Gaps = 29/256 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ +V GV +AE +F++ + +G + KA +M + G+
Sbjct: 164 LDLVSKVKGVVEAENHFNSFPPPAKNKYTYGSLLNCYCKELMLDKALSHFDKMDEFGYLT 223
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ +M + L+ K+ L+ M+E+ I +FT + ++ AA +D+ ++++
Sbjct: 224 SLSFTNLMSMYMRLS-QPSKVPQLVNVMKERKIRMTEFTYILWMNSCAALNDLGEVERVY 282
Query: 120 NMTESNPQMVLDF----NLLAVLLYM-----AMTMLKKSEGLIATKRNSSNAFELK---- 166
+ + +D+ NL A+ + A MLKK EG++ ++ + F L
Sbjct: 283 EEMKREDEDKIDWKTYSNLAAIYIKAGFFEKAELMLKKVEGVMKPRQRETYHFLLSLYAG 342
Query: 167 ----DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
++YR+W + V N+ Y+ M+ L +L+D++G K + W S+++ YD L
Sbjct: 343 TGNVKEVYRVWGTLKKITPVTNRSYLIMLSNLRRLNDMEGIIKLFKEWESRHVSYDSRLV 402
Query: 223 SSLIDAHCKNGLLEKA 238
+ A+ + ++A
Sbjct: 403 GVAVQAYLSQNMDKEA 418
>gi|297847014|ref|XP_002891388.1| hypothetical protein ARALYDRAFT_336905 [Arabidopsis lyrata subsp.
lyrata]
gi|297337230|gb|EFH67647.1| hypothetical protein ARALYDRAFT_336905 [Arabidopsis lyrata subsp.
lyrata]
Length = 310
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 68/253 (26%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
+RL+L+ V G+E+AE +F++I + +R + + KAE ++M+D+G
Sbjct: 94 ARLHLVETVLGLEEAEKFFESIPENMRDYSVYDNLLRSYTKSEKTLDKAEATFEKMRDLG 153
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
F + M+ L ++ + L EM E + D
Sbjct: 154 FLLKPSPFNSMISLYRHLKKKDMVKKLEREMMENDVRFDSHK------------------ 195
Query: 117 KIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY 176
+ N+L +L KD +Y +W +
Sbjct: 196 --------------ELNVLTIL------------------------STCKDSMYSVWNYI 217
Query: 177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236
+ K+ ++ Y + + LLKLDDV+GAEK W D +PS LI C+ G
Sbjct: 218 KKRGKMTDEEYRSRISYLLKLDDVQGAEKLYEEWKPVGPKLDMSIPSLLISRFCEEGNGS 277
Query: 237 KAQSLINHAETKK 249
K + L++ KK
Sbjct: 278 KVEELVDSIRKKK 290
>gi|356565994|ref|XP_003551220.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g60770-like [Glycine max]
Length = 469
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 43/259 (16%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ + G+ A+ YF N+ + + L G + KAE +++MK++
Sbjct: 106 LDLLAKARGITAAKNYFVNLPESAKNHLCHGAILNCYCKEPMIEKAEGFMEKMKELSLPL 165
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +++L G EK+ +L+ EM+ +I D +T + A AA +DI ++++
Sbjct: 166 SSMPYNSLIMLYTKVGQPEKVSSLIQEMKTSNIMLDSYTYNVWMRALAAVNDISSVERV- 224
Query: 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEG---------LIATKRNSSNAFELKDQLY 170
+ +M MA+T L+K LI +SN +E+ +
Sbjct: 225 -----HDEM------------MALTELEKRNAFKDLTAYQFLITFYGXTSNLYEV----F 263
Query: 171 RIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH 229
R+W+ K N Y+ M+ +L+K D+ G EK YD + + LI A+
Sbjct: 264 RVWRSLRLAFPKTANISYLNMIRVLVKSKDLLGEEKCFXEXECGCPTYDIRVVNVLIRAY 323
Query: 230 CKNGLLEKAQSLINHAETK 248
K +LEKA+ L HA +
Sbjct: 324 AKLDMLEKAEELKEHARRR 342
>gi|449462348|ref|XP_004148903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Cucumis sativus]
gi|449491586|ref|XP_004158945.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Cucumis sativus]
Length = 531
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 124/264 (46%), Gaps = 33/264 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ---CLFFGVG--------KAEMVVQEMKDMGFAR 59
L+LI ++ G+ +AE +F+++ +R+ C KAE ++++M + GF +
Sbjct: 123 LDLICKIRGLNRAEKFFEDLPDKIREQSVCTSLLHAYVQNNLSEKAEALMEKMSECGFLK 182
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ L+ EK+ AL +E +K+ D T + + +D + I
Sbjct: 183 SPLSFNHMLSLHISNKQLEKVPAL-IEGLKKNTKPDVVTYNLLLNVCTLQNDTEAAENIF 241
Query: 119 --INMTESNPQMVLDFNLLA------VLLYMAMTMLKKSEGLIATKRNSSNAFEL----- 165
+ T+ P V F+ LA L A LK+ E + A K N + L
Sbjct: 242 LEMKKTKIQPDWV-SFSTLANLYCKNQLTEKAAATLKEMEKM-AFKSNRLSLSSLLSLYT 299
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K+++YRIWK + RK+ ++ YM M+ L+KL++++ AEK W S + D
Sbjct: 300 NLGDKNEVYRIWKKLKSSFRKMSDREYMCMISSLVKLNELEEAEKLYTEWESVSGTRDTR 359
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + ++ A+ K +E+A+S N
Sbjct: 360 VSNVMLGAYIKKNQIEQAESFYNR 383
>gi|298571986|gb|ADI87990.1| PPR protein [Silene latifolia]
Length = 224
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAEM++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|224130976|ref|XP_002320971.1| predicted protein [Populus trichocarpa]
gi|222861744|gb|EEE99286.1| predicted protein [Populus trichocarpa]
Length = 473
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 33/266 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK-----------LLRQCLFFGVGKAEMVVQEMKDMGFAR 59
L+LI + G+ AE YFD +S L C KA + ++M M F
Sbjct: 84 LDLIAKKEGIAAAENYFDGLSPSEQNHSTHGALLSCYCRELMSEKALTLFEKMDKMKFLL 143
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ ++ L+ EK+ ++ EM++K ++ FT + +Y +D G+++++
Sbjct: 144 TSLPFNNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWMQSYGCLNDFEGVERVL 203
Query: 120 NMTESNPQMVLDF----NLLAVLLYM-----AMTMLKKSEGLIATKRNSSNAFELKDQLY 170
+ + + Q + NL + + A + LKK E I +R+ A+ LY
Sbjct: 204 DEMKMDGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQI--ERDYREAYHFLITLY 261
Query: 171 RIWKHYGQTRKVFNK-----------GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
+ G+ +V+N Y+TM+ L KL DV+G K + W S YD
Sbjct: 262 AGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKEWESSCHSYDM 321
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHA 245
L + I A ++ + E+A + + A
Sbjct: 322 RLANVAIRACLEHDMYEEAALIFDDA 347
>gi|224089975|ref|XP_002308888.1| predicted protein [Populus trichocarpa]
gi|222854864|gb|EEE92411.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 123/267 (46%), Gaps = 42/267 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVVQEMKDMGF 57
SRL+LI +V G+ +AE+Y D I K LL C+ V KAE V +M+D+ F
Sbjct: 160 SRLDLIAKVRGLHKAEVYIDKIPKSFKGEVIYRTLLANCVVDHNVKKAEEVFNKMRDLEF 219
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++KI ++L ME++++ FT I ++D+ GMD+
Sbjct: 220 PITPFACNQLLLL-YKRLDKKKIADVLLLMEKENVKPSLFTYKILIDTKGQSNDMTGMDQ 278
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKRNSS--------------- 160
I+ ++ + D A++ Y++ + +K+E ++ +
Sbjct: 279 IVETMKAE-GIEPDIRTQAIMARHYVSGGLKEKAEAILKEMEGGNLEEHRWACRFMLPLY 337
Query: 161 NAFELKDQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGA----EKTLRNWTSKNL 215
A D++ R+WK ++ ++ + G L K+D+ + KT + +S++
Sbjct: 338 GALGKADEVSRVWKFCEKSPRLDECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLSSRHY 397
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLI 242
S+L+ + + +L K + LI
Sbjct: 398 -------STLLKVYANHKMLSKGKDLI 417
>gi|298572058|gb|ADI88026.1| PPR protein [Silene latifolia]
Length = 224
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAEM++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572060|gb|ADI88027.1| PPR protein [Silene latifolia]
Length = 224
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGKLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y K+ N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572008|gb|ADI88001.1| PPR protein [Silene latifolia]
gi|298572012|gb|ADI88003.1| PPR protein [Silene latifolia]
gi|298572028|gb|ADI88011.1| PPR protein [Silene latifolia]
gi|298572052|gb|ADI88023.1| PPR protein [Silene latifolia]
Length = 224
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y K+ N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572030|gb|ADI88012.1| PPR protein [Silene latifolia]
Length = 224
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAEM++++M++ G+ + +MM L ++++ L+ EM++K I+ D ++ I
Sbjct: 26 KAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGELEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y K+ N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572004|gb|ADI87999.1| PPR protein [Silene latifolia]
gi|298572006|gb|ADI88000.1| PPR protein [Silene latifolia]
Length = 224
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y K+ N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|395146485|gb|AFN53641.1| pentatricopeptide repeat-containing protein [Linum usitatissimum]
Length = 516
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 114/267 (42%), Gaps = 31/267 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNI-----------SKLLRQCLFFGVGKAEMVVQEMKDMGFA 58
RL+LI + G+ +AE YF+ + S L C KA + Q+M + F
Sbjct: 117 RLDLICKTKGITEAENYFNGLVPSAKNPATYGSLLNSYCKKLDSEKALQLFQKMDKLKFF 176
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
R ++ +M + G +EK+ L+ +M++ ++ FT I + D G+ K+
Sbjct: 177 RNSLPFNNLMSMYMRLGQQEKVPELVSQMKQMNLPPCTFTYNIWIQSLGHMRDFEGIKKV 236
Query: 119 INMTESNPQMVLDFN------LLAVL-----LYMAMTMLKKSEGLIATKRNSSNAFELK- 166
+ ++ +FN L AV A LK E I + ++ F L
Sbjct: 237 LEEMRNDVNFGNNFNWTTYSNLAAVYTSAGEFERAKLALKMMEERIDSHDRNAYHFLLTL 296
Query: 167 -------DQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
++++R+W + +V N Y+ M+ L +L DV+G K W S YD
Sbjct: 297 YGGIADLEEVHRVWGCLKAKFNQVTNASYLVMLQALARLKDVEGISKVFEEWESVCTSYD 356
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHA 245
+ + I + + G+ +A+++ + A
Sbjct: 357 MRVANVAIRVYLEKGMYNEAEAVFDGA 383
>gi|298571984|gb|ADI87989.1| PPR protein [Silene latifolia]
Length = 224
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEDLVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y K+ N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298571988|gb|ADI87991.1| PPR protein [Silene latifolia]
Length = 224
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y K+ N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|297739953|emb|CBI30135.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
SR++LI +V G+++AE Y + I K R L + KAE V +MKD+GF
Sbjct: 229 SRVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGF 288
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T C +++L Y +++KI ++L ME++ + FT G+ ++DI GM++
Sbjct: 289 PITTFACNQLLLL-YKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQ 347
Query: 118 II 119
I+
Sbjct: 348 IV 349
>gi|125532536|gb|EAY79101.1| hypothetical protein OsI_34208 [Oryza sativa Indica Group]
Length = 369
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 142 AMTMLKKSEGLIATKRNS-SNAFEL--------KDQLYRIWKHYGQ--TRKVFNKGYMTM 190
A+ ++SE IA K N + F L ++ RIW Y N YM
Sbjct: 130 ALQAFQESEKKIAKKSNRVAYGFLLTMYADLGMNSEVDRIWDVYKSKVPASACNSMYMCR 189
Query: 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ +LLK++D+ GAEK W SK++ +D L + L+ A+CK GL+EKA++L++ KKG
Sbjct: 190 ISVLLKMNDIVGAEKAYEEWESKHVYHDSRLINLLLTAYCKEGLMEKAEALVDQF-VKKG 248
>gi|225441211|ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Vitis vinifera]
Length = 587
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
SR++LI +V G+++AE Y + I K R L + KAE V +MKD+GF
Sbjct: 192 SRVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGF 251
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T C +++L Y +++KI ++L ME++ + FT G+ ++DI GM++
Sbjct: 252 PITTFACNQLLLL-YKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQ 310
Query: 118 II 119
I+
Sbjct: 311 IV 312
>gi|449523950|ref|XP_004168986.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 191
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 18 HGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGFARRTIYCYI 66
H +E E YF+N+ L++C KA V+Q++K+MGFA+ ++ I
Sbjct: 79 HALE-VEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNI 137
Query: 67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123
M L + G E++D+ ++E ++ DQFT R SAYA A D G++KI+ E
Sbjct: 138 TMNLYHQIGEFERLDS---PLKETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQME 191
>gi|414877074|tpg|DAA54205.1| TPA: hypothetical protein ZEAMMB73_351899 [Zea mays]
Length = 613
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 118/264 (44%), Gaps = 38/264 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
+R++L +V+G+ +AE Y + I LL C+ G V K+E V MKD+GF
Sbjct: 217 ARVDLTAKVYGLHKAEQYIEKIPASHRSEVVYRTLLANCVAEGNVKKSEQVFNRMKDLGF 276
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T +++L Y +++KI ++ ME++ + FT + A D+ M+K
Sbjct: 277 PVTTFSSNQLLLL-YKRLDKKKIADVLTMMEKEDVKPSIFTYKVLVDAKGMVGDVEAMEK 335
Query: 118 II-NMTESNPQMVLDFNLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAFELK--- 166
++ +M + + L FN Y+ A T+L+ EG K ++ F L
Sbjct: 336 VVESMVKDGIEPDLTFNATIARQYIFNGQRDKAETLLESMEGDDIQKNRAACKFLLPLYA 395
Query: 167 -----DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN----WTSKNLPY 217
D + RIWK ++ ++ + KL +V+ AEK + W KNL
Sbjct: 396 FLGNGDAVERIWKVCEDNTRI--DECLSAIDAFGKLGNVEKAEKVFEDMFVKW--KNLSS 451
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSL 241
+ ++L+ + LL+K + L
Sbjct: 452 KYY--TALLKVYANQNLLDKGEEL 473
>gi|357509403|ref|XP_003624990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500005|gb|AES81208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 623
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 45/268 (16%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
S+L+LI ++HG+ +AE+Y + I + R + + + KAE + +MKD+ F
Sbjct: 229 SQLDLIAKLHGLHKAEVYIEKIPESFRGEIIYRTLLANCVTQNNLKKAEEIFNKMKDLEF 288
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++KI ++L ME++++ T I ++DI GMD+
Sbjct: 289 PLTPFACNQLLLL-YKRTDKKKIADVLLLMEQENVKPSPLTFKILIDVKGQSNDIDGMDQ 347
Query: 118 IINMTESNPQMVLDFNLLAVLL--YM-------AMTMLKKSEGLIATKRNS--------- 159
I++ + + D AVL+ Y+ A +LK+ EG K N
Sbjct: 348 IVDQMRAE-GIEPDNYTKAVLVGHYISGGHDDKAKMLLKEMEGE-NLKENRWVCRLLLAL 405
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNK--GYMTMMGLLLKLDDVKGA-EKTLRNW--TSKN 214
+ D++ R+WK +TR + G L K+D+ + E R W TSKN
Sbjct: 406 YAKLGMADEVGRVWK-VCETRPSVEDCVAAIEAWGKLKKIDEAEAVFEVMARKWKLTSKN 464
Query: 215 LPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
S L++ + N +L K + LI
Sbjct: 465 C-------SVLLNVYANNKMLTKGKDLI 485
>gi|6958202|gb|AAF32491.1|AF091837_1 DNA-binding protein [Triticum aestivum]
Length = 612
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNIS----------KLLRQCLF-FGVGKAEMVVQEMKDMGF 57
SRL+L+ +VHGV +AE Y D+I LL C+ V K+E V +MKD+GF
Sbjct: 217 SRLDLVAKVHGVYKAEKYIDSIPISHRGEIVYRTLLANCVSEANVKKSEEVFNKMKDLGF 276
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T++ ++L Y +++KI ++ +ME++++ FT + A DI GM+K
Sbjct: 277 PV-TVFAINQLLLLYKRVDKKKIADVLAKMEKENVKPSLFTYKLLVDTKGAIRDIAGMEK 335
Query: 118 II-NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATK-----RNSSNAFEL------ 165
++ +M + L F Y+ +K+E ++ + + + NA ++
Sbjct: 336 VVESMQAEGVEPDLLFQATIAKHYIFAGHREKAEAILESMEGGDIKGNRNACKILLPLYA 395
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
KD + R+W+ ++ ++ + +L DV+ AEK +
Sbjct: 396 FLGKKDDVERMWQVCEANPRL--DECLSAIESFGRLGDVERAEKVFED 441
>gi|298571978|gb|ADI87986.1| PPR protein [Silene latifolia]
gi|298571980|gb|ADI87987.1| PPR protein [Silene latifolia]
gi|298571982|gb|ADI87988.1| PPR protein [Silene latifolia]
gi|298571990|gb|ADI87992.1| PPR protein [Silene latifolia]
gi|298571994|gb|ADI87994.1| PPR protein [Silene latifolia]
gi|298571996|gb|ADI87995.1| PPR protein [Silene latifolia]
gi|298571998|gb|ADI87996.1| PPR protein [Silene latifolia]
gi|298572002|gb|ADI87998.1| PPR protein [Silene latifolia]
gi|298572020|gb|ADI88007.1| PPR protein [Silene latifolia]
gi|298572022|gb|ADI88008.1| PPR protein [Silene latifolia]
Length = 224
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|91806413|gb|ABE65934.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 279
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN-WTSKNLPYDFG 220
A E++D ++R+W Y TR+ N+ + T++G LLKL D KGAEK N W L +D
Sbjct: 7 AGEIED-VHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNR 65
Query: 221 LPSSLIDAHCKNGLLEKAQSLIN 243
+P L+ + + G++ KA L+N
Sbjct: 66 IPDMLVSGYREKGMVMKADKLVN 88
>gi|298572062|gb|ADI88028.1| PPR protein [Silene latifolia]
Length = 224
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSHGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572040|gb|ADI88017.1| PPR protein [Silene latifolia]
Length = 224
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFTNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|115487560|ref|NP_001066267.1| Os12g0170100 [Oryza sativa Japonica Group]
gi|77553759|gb|ABA96555.1| DNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113648774|dbj|BAF29286.1| Os12g0170100 [Oryza sativa Japonica Group]
gi|125578643|gb|EAZ19789.1| hypothetical protein OsJ_35368 [Oryza sativa Japonica Group]
gi|215767656|dbj|BAG99884.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 611
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 34/230 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SR++L+ + H + +AE Y +N+ LL C+ V KAE V +MKD+GF
Sbjct: 215 SRVDLVAKTHSIYKAEKYIENVPASHRGEIVYRTLLANCVAIANVKKAEQVFNKMKDLGF 274
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++K+ ++ ME++++ FT + AA DI M+K
Sbjct: 275 PVSVFSCNQLLLL-YKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDMEK 333
Query: 118 IINMTESN---PQMVLDFNLLAVLLYMAMTMLKKSEGLIA-------TKRNSSNAFELK- 166
+I +++ P ++ F Y+ +KSE ++ + S+ F L
Sbjct: 334 VIQAMQADGIEPDLL--FQATIARHYIFGGYREKSEAILEQMVGDDINENRSACKFVLPL 391
Query: 167 -------DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
D + RIWK ++ M+ + KL DV+ AE+ N
Sbjct: 392 YAFLGKNDDVERIWKVCEANARL--DECMSAIEAFGKLGDVEKAEEIFDN 439
>gi|298572024|gb|ADI88009.1| PPR protein [Silene latifolia]
gi|298572032|gb|ADI88013.1| PPR protein [Silene latifolia]
gi|298572044|gb|ADI88019.1| PPR protein [Silene latifolia]
gi|298572056|gb|ADI88025.1| PPR protein [Silene latifolia]
Length = 224
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|449470082|ref|XP_004152747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Cucumis sativus]
Length = 439
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-----CLFFG------VGKAEMVVQEMKDMGFA 58
RL L + HG+ +AE YF+ + + Q L G KAE + +++D G
Sbjct: 134 RLELTIKAHGLLKAEEYFNQLPTIASQKASSLPLLHGYVKERNTEKAEAFMVKLRDSGLV 193
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM--- 115
MM L T EK+ ++ +M++ I + + + +A S+++G+
Sbjct: 194 VNHHLYNEMMKLYVATYQNEKVPLVIKDMKQNQIPRNVLSYNLWMNA---CSELYGVGSI 250
Query: 116 ---------DKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAF--- 163
DK + + S + + + L+ A LK++E ++ + F
Sbjct: 251 ELVFEEMLTDKNVQVGWSTMCTLANVYIQEGLVEKAFAALKEAEKKLSPCKRLGYFFLIT 310
Query: 164 ---ELKDQ--LYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
LKD+ ++R+W+ + Y+ ++ L+KL ++ AEK + W Y
Sbjct: 311 LYASLKDKEGVFRVWRASKAVSGNPTCANYICILLCLVKLGEIDKAEKVFKEWELNCRNY 370
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
D + + L+ A+ +NGLLEKA+SL H + G
Sbjct: 371 DIRVSNVLLGAYVRNGLLEKAESLHRHTLGRGG 403
>gi|125535921|gb|EAY82409.1| hypothetical protein OsI_37623 [Oryza sativa Indica Group]
Length = 611
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 30/228 (13%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SR++L+ + H + +AE Y +N+ LL C+ V KAE V +MKD+GF
Sbjct: 215 SRVDLVAKTHSIYKAEKYIENVPASHRGEIVYRTLLANCVAIANVKKAEQVFNKMKDLGF 274
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +++K+ ++ ME++++ FT + AA DI M+K
Sbjct: 275 PVSVFSCNQLLLL-YKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAARDIEDMEK 333
Query: 118 IINMTESN---PQMVLDFNLLAVLLY-----MAMTMLKKSEGLIATKRNSSNAFELK--- 166
+I +++ P ++ + ++ A +L++ G + S+ F L
Sbjct: 334 VIQAMQADGIEPDLLFQATIARHYIFGGYREKAEAILEQMVGDDINENRSACKFVLPLYA 393
Query: 167 -----DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
D + RIWK ++ M+ + KL DV+ AE+ N
Sbjct: 394 FLGKNDDVERIWKVCEANARL--DECMSAIEAFGKLGDVEKAEEIFDN 439
>gi|298572066|gb|ADI88030.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLDKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572010|gb|ADI88002.1| PPR protein [Silene latifolia]
gi|298572034|gb|ADI88014.1| PPR protein [Silene latifolia]
gi|298572054|gb|ADI88024.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572042|gb|ADI88018.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGELEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFTNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|326533934|dbj|BAJ93740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 111/262 (42%), Gaps = 34/262 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNI----------SKLLRQCLFFGVGKAEMVVQEMKDMGFAR 59
RL+LI V+G+E AE YF ++ S LL KA + ++M+ M
Sbjct: 111 RLDLICTVNGLEAAEEYFLSLPDMYKSVKTYSSLLHCYAEHKAEKALELYEKMRTMNIVP 170
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ +M L TG EKI EM + D FT + ++ + + +K +
Sbjct: 171 NTLVYKNLMSLYLKTGQPEKILQTFEEMRANGVRTDNFTYYMLTESHIMLNGLESTEKFL 230
Query: 120 -NMTESNP-------QMVLDFNLLAVLLYMAMTMLKKSE-----------GLIATKRNSS 160
++ +S P ++ +N + +T+ K E L++ +S
Sbjct: 231 EDLEKSIPVHWSLYTRLADSYNKVGQFDKAGLTLKKAEEVMDRGEMFAWHNLLSLYASSG 290
Query: 161 NAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
N E+K R+W K+ N+ Y+ M+ L KLDD ++ + W YD
Sbjct: 291 NLSEVK----RVWSSLRSELKISSNRSYLVMLSALKKLDDFDCMQQVFQEWELTQESYDM 346
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+P+ +I A+ + ++A++L
Sbjct: 347 RIPNVMIKAYLAKDMTDEAEAL 368
>gi|297847016|ref|XP_002891389.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337231|gb|EFH67648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 371
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 67/253 (26%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF------------GVGKAEMVVQEMKDMG 56
+RLNL+ V G+E+AE +F+ I + +R + + KAE ++M+D+G
Sbjct: 124 ARLNLVETVLGLEEAEKFFERIPENMRDYSVYENLLRSYTKSEKTLDKAEDTFEKMRDLG 183
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
F + M+ L R+ + L EM E ++ D RP
Sbjct: 184 FLSKPSPFDTMISLYRKLNKRDMVKKLKYEMMENNVKID------RP------------- 224
Query: 117 KIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY 176
++ N+L+++ + F+ +D L +W Y
Sbjct: 225 -------------IELNVLSIV----------------------SDFK-RDYLDPLWNKY 248
Query: 177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236
+ K+ + Y + LLKLDDV+GAEK + W D +P LI G
Sbjct: 249 KKEGKLMDDEYRIRISYLLKLDDVQGAEKIYQKWQPTGPKLDMSVPGLLISRFRAEGNES 308
Query: 237 KAQSLINHAETKK 249
K + ++N K+
Sbjct: 309 KVEEMVNSIRMKR 321
>gi|298572026|gb|ADI88010.1| PPR protein [Silene latifolia]
gi|298572046|gb|ADI88020.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGELEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298571976|gb|ADI87985.1| PPR protein [Silene latifolia]
gi|298571992|gb|ADI87993.1| PPR protein [Silene latifolia]
gi|298572000|gb|ADI87997.1| PPR protein [Silene latifolia]
gi|298572064|gb|ADI88029.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572016|gb|ADI88005.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572018|gb|ADI88006.1| PPR protein [Silene latifolia]
Length = 224
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++V ++ + + +Y L+K+E + T
Sbjct: 86 SARGSHGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|449515498|ref|XP_004164786.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Cucumis sativus]
Length = 439
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-----CLFFG------VGKAEMVVQEMKDMGFA 58
RL L + HG+ +AE YF+ + + Q L G KAE + +++D G
Sbjct: 134 RLELTIKAHGLLKAEEYFNQLPTIASQKASSLPLLHGYVKERNTEKAEAFMVKLRDSGLV 193
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM--- 115
MM L T EK+ ++ +M++ I + + + +A S+++G+
Sbjct: 194 VNHHLYNEMMKLYVATYQNEKVPLVIKDMKQNLIPRNVLSYNLWMNA---CSELYGVGSI 250
Query: 116 ---------DKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAF--- 163
DK + + S + + + L+ A LK++E ++ + F
Sbjct: 251 ELVFEEMLTDKNVQVGWSTMCTLANVYIQEGLVEKAFAALKEAEKKLSPCKRLGYFFLIT 310
Query: 164 ---ELKDQ--LYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
LKD+ ++R+W+ + Y+ ++ L+KL ++ AEK + W Y
Sbjct: 311 LYASLKDKEGVFRVWRASKAVSGNPTCANYICILLCLVKLGEIDKAEKVFKEWELNCRNY 370
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
D + + L+ A+ +NGLLEKA+SL H + G
Sbjct: 371 DIRVSNVLLGAYVRNGLLEKAESLHRHTLGRGG 403
>gi|449437710|ref|XP_004136634.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
gi|449506005|ref|XP_004162626.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 606
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
SRL+LI +V G+ +AE Y I K + + + V KAE V +MKD+ F
Sbjct: 209 SRLDLIAKVQGLHKAESYIAKIPKSFQGEVMYRTLLANYVAANNVNKAEEVFNKMKDLEF 268
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T + Y +++ Y +R KI ++L ME++++ FT I A + DI GM++
Sbjct: 269 PM-TTFAYNQVLVLYKRNDRRKIADVLLLMEKENVKPSPFTYKILIDAKGLSKDISGMEQ 327
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKR--NSSNA----------- 162
+++ ++ + LD L +L Y++ + K++ + NS +
Sbjct: 328 VVDTMKAE-GIELDVFALCLLAKHYVSCGLKDKAKATLKEMEEINSKGSRWPCRLLLPLY 386
Query: 163 --FELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE----KTLRNWTSKNLP 216
E++D++ R+W+ + + M + KL ++ AE K ++ W K +
Sbjct: 387 GELEMEDEVRRLWEICEANPHI--EECMAAIVAWGKLKNIHEAEKIFDKVVKTWPKKKIS 444
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINH 244
+ CK +L K + L+N
Sbjct: 445 TKHYCTMIKVYGDCK--MLTKGKELVNQ 470
>gi|115458674|ref|NP_001052937.1| Os04g0450200 [Oryza sativa Japonica Group]
gi|113564508|dbj|BAF14851.1| Os04g0450200, partial [Oryza sativa Japonica Group]
Length = 292
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 30/262 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
R++LI V G AE +F+ + ++ + KAE + + MKD +
Sbjct: 12 RIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLS 71
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ + E++ + + D FT +R SA AA+ D+ G I
Sbjct: 72 MNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGI 131
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSS--------------N 161
++ +P + L LAV+ A ++ L+ + S
Sbjct: 132 LDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREWITYDFLVILHT 191
Query: 162 AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
+D++ IWK T +++ ++ Y+ ++ L +K A + + W P +D
Sbjct: 192 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 251
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+ L DA G + A S
Sbjct: 252 SACNRLFDAFLNAGFTDTANSF 273
>gi|125579556|gb|EAZ20702.1| hypothetical protein OsJ_36321 [Oryza sativa Japonica Group]
Length = 491
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE +++EM G+ + MM L +G EK+ ++ E+ +I D T I
Sbjct: 139 KAEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIP-DLVTYNIWL 197
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLD---FNLLAVLLYMAMTMLKKSEGLIATKRNSS 160
+ + + + +K+ ++ + + ++V D F+LL + A +K + L+ ++ +S
Sbjct: 198 TYCSKKNSVKAAEKVYDLMK-DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRAS 256
Query: 161 N--------------AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
+ + L R+W+ +T RK + Y M+ L + D+ AE
Sbjct: 257 RKERAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAES 316
Query: 206 TLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
W S + D +P++++ + KNG++EKA+ ++H
Sbjct: 317 FYSEWESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDH 355
>gi|298572036|gb|ADI88015.1| PPR protein [Silene latifolia]
Length = 224
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|21740710|emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa Japonica Group]
gi|116310079|emb|CAH67100.1| H0818E04.17 [Oryza sativa Indica Group]
Length = 430
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 30/262 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
R++LI V G AE +F+ + ++ + KAE + + MKD +
Sbjct: 150 RIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLS 209
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ + E++ + + D FT +R SA AA+ D+ G I
Sbjct: 210 MNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGI 269
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSS--------------N 161
++ +P + L LAV+ A ++ L+ + S
Sbjct: 270 LDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREWITYDFLVILHT 329
Query: 162 AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
+D++ IWK T +++ ++ Y+ ++ L +K A + + W P +D
Sbjct: 330 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 389
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+ L DA G + A S
Sbjct: 390 SACNRLFDAFLNAGFTDTANSF 411
>gi|125548508|gb|EAY94330.1| hypothetical protein OsI_16098 [Oryza sativa Indica Group]
Length = 430
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 30/262 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
R++LI V G AE +F+ + ++ + KAE + + MKD +
Sbjct: 150 RIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLS 209
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ + E++ + + D FT +R SA AA+ D+ G I
Sbjct: 210 MNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGI 269
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSS--------------N 161
++ +P + L LAV+ A ++ L+ + S
Sbjct: 270 LDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISQREWITYDFLVILHT 329
Query: 162 AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
+D++ IWK T +++ ++ Y+ ++ L +K A + + W P +D
Sbjct: 330 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 389
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+ L DA G + A S
Sbjct: 390 SACNRLFDAFLNAGFTDTANSF 411
>gi|298572050|gb|ADI88022.1| PPR protein [Silene latifolia]
Length = 224
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L ++++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|298572960|gb|ADI88477.1| PPR protein [Silene vulgaris]
Length = 224
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L +K++ L+ EM++K I D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKIQLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
SA + M+++ + +P++ ++ + + +Y + L+K+E + T
Sbjct: 86 SARGSQGSPESMEQVFQEMDLDPRIAPNWTTFSTMAAMYSKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLISLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|413946863|gb|AFW79512.1| DNA-binding protein [Zea mays]
Length = 622
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 38/264 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
+ L+L +V+G+ +AE + I LL C+ + K+E V MKD+GF
Sbjct: 226 AHLDLTAKVYGLHKAEQTIEKIPASCRGEIVYRTLLANCVSASNIKKSEQVFNRMKDLGF 285
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T + + ++L Y +R+KI ++ ME++ + FT I A + DI M+K
Sbjct: 286 PV-TQFSFNQLLLLYKRLDRKKIADVLAMMEKEDVKPSLFTYKILVDAKGSVGDIEAMEK 344
Query: 118 II-NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIAT------KRNSSNAFEL----- 165
+I +M + + + L FN Y+ +K+E L+ ++N + L
Sbjct: 345 VIESMEKDSIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQKNRAACKTLLPLHA 404
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN----WTSKNLPY 217
D + RIWK +V ++ + KL DV+ AEK + W K L
Sbjct: 405 FLGNSDAVERIWKACEDNTRVAES--VSAIEAFGKLGDVEKAEKVFEDMLVHW--KTLSS 460
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSL 241
F ++L+ + + LL+K + L
Sbjct: 461 KFY--NALLKVYADHNLLDKGKEL 482
>gi|226530081|ref|NP_001147602.1| DNA-binding protein [Zea mays]
gi|195612448|gb|ACG28054.1| DNA-binding protein [Zea mays]
Length = 622
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 38/264 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
+ L+L +V+G+ +AE + I LL C+ + K+E V MKD+GF
Sbjct: 226 AHLDLTAKVYGLHKAEQTIEKIPASCRGEIVYRTLLANCVSASNIKKSEQVFNRMKDLGF 285
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T + + ++L Y +R+KI ++ ME++ + FT I A + DI M+K
Sbjct: 286 PV-TQFSFNQLLLLYKRLDRKKIADVLAMMEKEDVKPSLFTYKILVDAKGSVGDIEAMEK 344
Query: 118 II-NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIAT------KRNSSNAFEL----- 165
+I +M + + + L FN Y+ +K+E L+ ++N + L
Sbjct: 345 VIESMEKDSIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQKNRAACKTLLPLHA 404
Query: 166 ----KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN----WTSKNLPY 217
D + RIWK +V ++ + KL DV+ AEK + W K L
Sbjct: 405 FLGNSDAVERIWKACEDNTRVAES--VSAIEAFGKLGDVEKAEKVFEDMLVHW--KTLSS 460
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSL 241
F ++L+ + + LL+K + L
Sbjct: 461 KFY--NALLKVYADHNLLDKGKEL 482
>gi|297844450|ref|XP_002890106.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335948|gb|EFH66365.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 594
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 30/223 (13%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
SRL+LI +V G+ + E Y + I + R L + V AE V +MKD+GF
Sbjct: 199 SRLDLISKVRGLYKGEAYIETIPESFRGELVYRTLLSNYVATSNVRTAEAVFNKMKDLGF 258
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T C M+IL Y +++KI ++L ME++++ + T I ++DI GM++
Sbjct: 259 PLSTFTCNQMLIL-YKRVDKKKIADVLLLMEKENLKPNLNTYKILIDTKGLSNDITGMEQ 317
Query: 118 II-NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSS---------------N 161
I+ M + L L Y + + +K+E ++ S
Sbjct: 318 IVETMKSEGVEPDLRARALIARNYASAGLKEKAEKVLKEMEGESLEENRHVYKDLLSVYG 377
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
+ D++ RIWK + + +N+ ++ K+D VK AE
Sbjct: 378 FLQRADEVTRIWK-ICEEKPRYNESLAAILA-FGKIDKVKEAE 418
>gi|125590560|gb|EAZ30910.1| hypothetical protein OsJ_14991 [Oryza sativa Japonica Group]
Length = 471
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 30/262 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
R++LI V G AE +F+ + ++ + KAE + + MKD +
Sbjct: 191 RIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLS 250
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ + E++ + + D FT +R SA AA+ D+ G I
Sbjct: 251 MNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGI 310
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSS--------------N 161
++ +P + L LAV+ A ++ L+ + S
Sbjct: 311 LDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREWITYDFLVILHT 370
Query: 162 AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
+D++ IWK T +++ ++ Y+ ++ L +K A + + W P +D
Sbjct: 371 GLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDI 430
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+ L DA G + A S
Sbjct: 431 SACNRLFDAFLNAGFTDTANSF 452
>gi|449506011|ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 613
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 32/225 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVVQEMKDMGF 57
SRL+LI ++ G+ AE Y I K LL C+ V KAE V +MKD+ F
Sbjct: 217 SRLDLIGKLRGLRMAENYIAKIPKSFQGEVVYRTLLANCVIACNVQKAEEVFNKMKDLEF 276
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L T R+ D L+L ME++++ +FT I ++DI GM++
Sbjct: 277 PITAFACNQLLLLYKRTDKRKVADILLL-MEKENVKPSRFTYRILIDTKGLSNDITGMEQ 335
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKR--NSSNA----------- 162
+++ ++ + LD + L+VL Y++ + K++ ++ NS +
Sbjct: 336 VVDTMKAE-GIELDVSTLSVLAKHYISGGLKDKAKAILKEMEEINSEGSRWPCRILLPLY 394
Query: 163 --FELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205
+++D++ R+W+ G + + M + KL +++ AEK
Sbjct: 395 GELQMEDEVRRLWEICGSNPHI--EECMAAIVAWGKLKNIQEAEK 437
>gi|296086986|emb|CBI33242.3| unnamed protein product [Vitis vinifera]
Length = 335
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
+L+LI V G AE YF+++ + +G K+ +Q+MK+MGFA
Sbjct: 113 QLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQTDKSLSHLQKMKEMGFA 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M L G EK+ ++ EM++ ++ D F+ I ++Y A SDI GM+ +
Sbjct: 173 SSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSNVYPDNFSYRICINSYGAQSDIQGMENV 232
Query: 119 INMTESNPQM 128
+ E P +
Sbjct: 233 LKEMERQPHI 242
>gi|356518447|ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Glycine max]
Length = 496
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 31/272 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ---CLFFGVG--------KAEMVVQEMKDMGFA 58
+L LI E HG+ +AE YF N+ + CL G KAE + ++ ++G
Sbjct: 104 KLELIIENHGLMEAEEYFMNLPDSAAKKAACLILLRGYVRDRDTSKAETFMLKLYELGLV 163
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI--NGDQFTLGIRPSAYAAASDIHGMD 116
MM L +T K+ ++ +M+ I N + L + + + ++
Sbjct: 164 VSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYVVAAVE 223
Query: 117 KIINMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAF---- 163
+ ++ + + + LA L A+ +LK +E ++T + F
Sbjct: 224 TVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLKDAEKKLSTCNRLGHFFLITL 283
Query: 164 --ELKDQ--LYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
LKD+ + R+W+ R ++ Y+ ++ L+KL D+ A++ W S YD
Sbjct: 284 YASLKDKEGVLRLWEASKAVRGRISCANYICILTCLVKLGDIVQAKRIFLEWESNCQKYD 343
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ + L+ A+ +NGL+E+A+SL H K G
Sbjct: 344 IRVSNVLLGAYVRNGLMEEAESLHLHTLQKGG 375
>gi|224085447|ref|XP_002307578.1| predicted protein [Populus trichocarpa]
gi|222857027|gb|EEE94574.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 37/263 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ---CLFF--------GVGKAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F++I +R C + KAE ++++M + GF +
Sbjct: 115 LDLIAKIRGLNSAEKFFEDIPDKMRDYQACSALLHVYVQNKSISKAEALMEKMSECGFLK 174
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ M+ + G EK+ ++ E+++K+ + D T + +A A+ +D+ +K+
Sbjct: 175 NALPYNHMLSVYVANGQLEKVAEIIQELKKKT-SPDVVTYNMWLTACASQNDVETAEKVF 233
Query: 120 NMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLI------ATKRNSSNAFEL------ 165
M ++ D+ + L LY+ L+K+ + A+K+N L
Sbjct: 234 -MELKKSKLDPDWVTYSTLTNLYIKKECLEKAAYTLKEVEKRASKKNRVTYSSLLSLHAN 292
Query: 166 ---KDQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
KD L+R W + + VFNK Y M+ L+KL + GAE W S + D
Sbjct: 293 MKDKDGLHRTW---NKMKSVFNKMNDAEYNCMISSLVKLGEFGGAENLYNEWESVSATRD 349
Query: 219 FGLPSSLIDAHCKNGLLEKAQSL 241
+ + ++ ++ +E A++
Sbjct: 350 SRVSNIVLASYINRNQMEDAENF 372
>gi|298572048|gb|ADI88021.1| PPR protein [Silene latifolia]
Length = 224
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KAE ++++M++ G+ + +MM L ++++ L+ EM++K I+ D ++ I
Sbjct: 26 KAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMKQKKISLDSYSYNIWL 85
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIA------T 155
S + M+++ + +P+++ ++ + + +Y + L+K+E + T
Sbjct: 86 STRGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRIT 145
Query: 156 KRNSSNAFEL---------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEK 205
R+ L + ++YR+W Y + N GY +++ L++ D++GAEK
Sbjct: 146 NRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEK 205
Query: 206 TLRNW 210
W
Sbjct: 206 LYEEW 210
>gi|22331104|ref|NP_188178.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273796|sp|Q9LRP6.1|PP234_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g15590, mitochondrial; Flags: Precursor
gi|11994226|dbj|BAB01348.1| DNA-binding protein [Arabidopsis thaliana]
gi|20856658|gb|AAM26678.1| AT3g15590/MQD17_5 [Arabidopsis thaliana]
gi|27363266|gb|AAO11552.1| At3g15590/MQD17_5 [Arabidopsis thaliana]
gi|332642175|gb|AEE75696.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 610
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVVQEMKDMGF 57
S+L+L+ +VH +++AEI+ +I + LL C+ V KAE + +MK++ F
Sbjct: 214 SQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKF 273
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +R+KI ++L ME ++I + T ++ A DI GM+K
Sbjct: 274 PTSVFACNQLLLL-YSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEK 332
Query: 118 IINM-----TESNPQM---VLDFNLLAVLLYMAMTMLKKSEG 151
I+ E +P++ + + + A L A ++K+ EG
Sbjct: 333 IVETIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEG 374
>gi|224125058|ref|XP_002319492.1| predicted protein [Populus trichocarpa]
gi|222857868|gb|EEE95415.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 166 KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSL 225
K +L+R W+ + + +N GY+ + L+K DD GAE+ W S +D +P+++
Sbjct: 72 KYELHRFWRFFKNSASFYNSGYLHITSSLMKSDDFDGAEEVWEEWLSLKTLFDVQVPNAM 131
Query: 226 IDAHCKNGLLEKAQSL 241
+ K GL EKA+ +
Sbjct: 132 FTCYSKKGLWEKARGI 147
>gi|297737393|emb|CBI26594.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 39/267 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNIS----------KLLRQCLFFGVG-KAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++S LL + V KAE ++++M + GF +
Sbjct: 131 LDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLK 190
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ L G EK+ ++ E+ +K+ + D T + + A+ +D+ +K+
Sbjct: 191 CPLPYNHMISLYISDGQLEKVPGMIQEL-KKNTSPDVVTYNLWLTVCASQNDVETAEKVL 249
Query: 119 --INMTESNPQMVLDFNLLAV-----LLYMAMTMLKKSEGLIATKRNSSNAF-------- 163
I + +P V +L + LL A T L + E T R A+
Sbjct: 250 LEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEK--RTSRKGRIAYSSLISLHT 307
Query: 164 --ELKDQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
+ KD ++RIWK + + +F+K Y M+ L+KL + + AE WTS +
Sbjct: 308 NMQDKDGVHRIWK---KLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTG 364
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINH 244
D +P+ L+ A+ +E A+ N
Sbjct: 365 DSRVPNILLAAYINKNEMEMAEKFYNQ 391
>gi|242073288|ref|XP_002446580.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
gi|241937763|gb|EES10908.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
Length = 415
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 30/259 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-----CLFFGVG------KAEMVVQEMKDMGFA 58
R++LI +V G AE +F+ + + L G KAE + + MKD +
Sbjct: 135 RIDLITKVFGASAAEDFFEKLPPGAKSLEAYTALLHSYGRSKMTDKAERLFERMKDANLS 194
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K++ + E++ ++++ D FT +R SA AA+ D+ G I
Sbjct: 195 MDALVYNEMMTLYISVGELDKVEIIAEELKRQNVSPDLFTYNLRVSAAAASMDLEGFKGI 254
Query: 119 INMTESNPQ----MVLDFNLLAVLLYMAMTM-----LKKSEGLIATKRNSSNAFEL---- 165
++ +P L NL +V + + + L ++E I+ + + F +
Sbjct: 255 LDEMSKDPNSKEGWTLYRNLASVYVDASQLVGSGNSLVEAEAKISQREWITYDFLVILHA 314
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
++++ IWK T +++ ++ Y+ ++ L +K A + + W P +D
Sbjct: 315 GLGNQERIKDIWKSMVMTSQRMTSRNYICVISSYLMCGQLKDAGEIVDQWQRSKAPEFDI 374
Query: 220 GLPSSLIDAHCKNGLLEKA 238
+ L+DA GL + A
Sbjct: 375 SACNRLLDALLSAGLTDTA 393
>gi|359490027|ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 39/267 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNIS----------KLLRQCLFFGVG-KAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++S LL + V KAE ++++M + GF +
Sbjct: 244 LDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLK 303
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ L G EK+ ++ E+ +K+ + D T + + A+ +D+ +K+
Sbjct: 304 CPLPYNHMISLYISDGQLEKVPGMIQEL-KKNTSPDVVTYNLWLTVCASQNDVETAEKVL 362
Query: 119 --INMTESNPQMVLDFNLLAV-----LLYMAMTMLKKSEGLIATKRNSSNAF-------- 163
I + +P V +L + LL A T L + E T R A+
Sbjct: 363 LEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEK--RTSRKGRIAYSSLISLHT 420
Query: 164 --ELKDQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
+ KD ++RIWK + + +F+K Y M+ L+KL + + AE WTS +
Sbjct: 421 NMQDKDGVHRIWK---KLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTG 477
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINH 244
D +P+ L+ A+ +E A+ N
Sbjct: 478 DSRVPNILLAAYINKNEMEMAEKFYNQ 504
>gi|356503391|ref|XP_003520493.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g80270, mitochondrial-like [Glycine max]
Length = 580
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFF-GVGKAEMVVQEMKDMGF 57
SRL+LI ++ G+ +AE+Y + I + LL C+ V KAE V +MKD+
Sbjct: 186 SRLDLIAKLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDL 245
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C ++ L Y +++KI L+L ME + I + + I + DI GMD+
Sbjct: 246 PITVFTCNELLFL-YKRNDKKKIADLLLLMENEKIKPSRHSYSILIDTKGQSKDIGGMDQ 304
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLI 153
I++ ++ + D N AVL Y++ + K E L+
Sbjct: 305 IVDRMKAQ-GIEPDINTQAVLARHYISAGLQDKVETLL 341
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 41/268 (15%)
Query: 11 LNLIFEVHGVEQAEIYFDNIS----------KLLRQCLFFGVG-KAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++S LL + V KAE ++++M + GF +
Sbjct: 131 LDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLK 190
Query: 60 RTIYCYIMMILNYLT-GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ Y MI Y++ G EK+ ++ E+ +K+ + D T + + A+ +D+ +K+
Sbjct: 191 CPLP-YNHMISLYISDGQLEKVPGMIQEL-KKNTSPDVVTYNLWLTVCASQNDVETAEKV 248
Query: 119 ---INMTESNPQMVLDFNLLAV-----LLYMAMTMLKKSEGLIATKRNSSNAF------- 163
I + +P V +L + LL A T L + E T R A+
Sbjct: 249 LLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEK--RTSRKGRIAYSSLISLH 306
Query: 164 ---ELKDQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
+ KD ++RIWK + + +F+K Y M+ L+KL + + AE WTS +
Sbjct: 307 TNMQDKDGVHRIWK---KLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPT 363
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINH 244
D +P+ L+ A+ +E A+ N
Sbjct: 364 GDSRVPNILLAAYINKNEMEMAEKFYNQ 391
>gi|326504724|dbj|BAK06653.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523789|dbj|BAJ93065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 419
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 30/262 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
R++LI +V G AE +F+ + + + + KAE + Q MKD
Sbjct: 139 RIDLITKVFGANAAEDFFEKLPPAAKSLEAYTALLHSYARSKMIDKAERLFQRMKDADLP 198
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ L E++ ++++ D FT +R SA A+ D+ I
Sbjct: 199 IDVLVYNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISASVASMDLEAFKGI 258
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSSN----AFEL------ 165
++ +P + L LA + A ++ L+ + S ++L
Sbjct: 259 LDEMSKDPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEAEAKISQREWITYDLLVILHA 318
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
D++ IWK T +++ ++ Y+ ++ L +K A + + W +P +D
Sbjct: 319 GLGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAEVVDQWQRSKVPEFDV 378
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+ L DA G + A S
Sbjct: 379 SACNRLFDALLAAGFTDTADSF 400
>gi|307136024|gb|ADN33878.1| DNA-binding protein [Cucumis melo subsp. melo]
Length = 470
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 1 MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVV 49
+TD+ Y S+L+LI ++ G+ AE Y I K LL C+ V KAE V
Sbjct: 194 VTDRDYA-SQLDLIGKLRGLRMAENYISKIPKSFQGEVVYRTLLANCVMSTNVRKAEEVF 252
Query: 50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
+MKD+ F C +++L Y +++KI ++L ME++++ FT I A +
Sbjct: 253 NKMKDLEFPITAFACNQLLLL-YKRTDKKKIADVLLLMEKENVKPSPFTYKILIDAKGLS 311
Query: 110 SDIHGMDKIIN 120
+DI GM+++++
Sbjct: 312 NDISGMEQVVD 322
>gi|242083618|ref|XP_002442234.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
gi|241942927|gb|EES16072.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
Length = 501
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 117/263 (44%), Gaps = 31/263 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFGVG-KAEMVVQEMKDMGFAR 59
L+L+ +V G+ A +F+++ + LL + G KAE ++ EM G+
Sbjct: 105 LDLVAKVRGLASAVKFFEDMPERAKAPSTCNALLHAYVQHGAREKAEAMMAEMARAGYLT 164
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ MM L +G E++ ++ E+ ++ D T + + + + +K+
Sbjct: 165 CALPFNHMMSLYMASGELERVPEMIKELRRYTVP-DLVTYNMWLTYCSKKKSVKSAEKVF 223
Query: 120 NMTESNPQMVLD---FNLLAVLLYMAMTMLKKSEGLIATKRNSSN--------------A 162
+ + + ++V D F+LL + A ++ L+ ++ +S +
Sbjct: 224 ALMKDD-RVVPDWMTFSLLGSIYINAGLHVEGRNALVEMEKMASRKERAAYSSLLTLYAS 282
Query: 163 FELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
+ L R+W +T RK + Y M+ L + +D+ AE R W S + D +
Sbjct: 283 LSDRGNLDRVWNKMRETFRKFSDTEYKCMLTSLTRFNDIAAAEGLYREWESASGTRDSRI 342
Query: 222 PSSLIDAHCKNGLLEKAQSLINH 244
P++++ + KNG++EKA+S +
Sbjct: 343 PNTILSYYIKNGMIEKAESFLGQ 365
>gi|307136025|gb|ADN33879.1| DNA-binding protein [Cucumis melo subsp. melo]
Length = 608
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 38/267 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQ-----------CLFFGVGKAEMVVQEMKDMGF 57
S L+LI +V G+ +AE Y I R L V KAE V MKD+ F
Sbjct: 213 SHLDLIAKVQGLHKAETYIAKIPNSFRGEAVYRTLLANYVLANDVKKAEEVFNRMKDLEF 272
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T + Y M++ Y +R +I ++ ME++++ FT I A ++DI GM++
Sbjct: 273 PM-TTFAYDQMLILYKRIDRRRIADILSLMEKENVKPRPFTYKILIDAKGLSNDISGMEQ 331
Query: 118 IIN-MTESNPQMVLDFNLLAVLLYM-------AMTMLKKSEGLIATKRNSSNAF------ 163
+++ M ++ +D LL Y+ AM +LK +E + + +
Sbjct: 332 VVDTMKAEGIKLDVDTLLLLAKHYVLGGLKDKAMPILKATEEVNSKGSRWPCRYLLPLYG 391
Query: 164 --ELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK----TLRNWTSKNLPY 217
+++D++ R+W+ V + M + KL +++ AEK ++ W + +
Sbjct: 392 ELQMEDEVRRLWEICEPNPNV--EECMAAIVAWGKLKNIQEAEKIFDRVVKTWKRLSTKH 449
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINH 244
S++I + + +L K + L+N
Sbjct: 450 ----YSTMIKVYGDSKMLTKGKELVNQ 472
>gi|115449217|ref|NP_001048388.1| Os02g0796400 [Oryza sativa Japonica Group]
gi|47497029|dbj|BAD19082.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497238|dbj|BAD19283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537919|dbj|BAF10302.1| Os02g0796400 [Oryza sativa Japonica Group]
gi|125584008|gb|EAZ24939.1| hypothetical protein OsJ_08720 [Oryza sativa Japonica Group]
Length = 517
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 115/264 (43%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKL---------LRQCLFF--GVGKAEMVVQEMKDMGFA 58
RL+LI +VHG QAE Y+ +S L C V KAE + E++ G
Sbjct: 123 RLDLIAKVHGTSQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYGLP 182
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+M L T EK+ +++ M+ +I + + I +A A S + +
Sbjct: 183 VDPHSFNEIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQSA 242
Query: 119 INMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFEL---- 165
++ + + ++ L + A+ L+ +E +++ +F +
Sbjct: 243 FKEMLNDDMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTCYA 302
Query: 166 ----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+D + R+W+ ++ YM+ M L+K+ D+ AE T +W +++ +D
Sbjct: 303 ALNDRDGVIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHDVR 362
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ A+ +NG +EKA+ L H
Sbjct: 363 VSNVLLGAYVRNGWIEKAERLHLH 386
>gi|115436130|ref|NP_001042823.1| Os01g0301500 [Oryza sativa Japonica Group]
gi|57899055|dbj|BAD87829.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113532354|dbj|BAF04737.1| Os01g0301500 [Oryza sativa Japonica Group]
gi|222618277|gb|EEE54409.1| hypothetical protein OsJ_01440 [Oryza sativa Japonica Group]
Length = 484
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 42/277 (15%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-------------CLFFGVGKAEMVVQEMKDMGF 57
L L++ V+G+E AE YF I R C KA + + M ++G
Sbjct: 123 LELLYSVYGIEAAEEYFSGIPSFTRDQNHRTYGALLNCYCSAKMEEKATNIYRRMDELGI 182
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM-D 116
T +M L G K+ L EM+E+++ D+ T I ++AA + I + +
Sbjct: 183 PSSTKLMNNLMGLYLELGQHSKVANLFDEMKERNVQPDELTCCILMRSHAAHNKIDTVKE 242
Query: 117 KIINMTESN-PQMVLDFNLLAVLLYMAMTMLKKSE-------GLIATKRNSSNAFELKDQ 168
NM+ + P+ F L +YM M++++E + + L Q
Sbjct: 243 TFYNMSLLDVPKQWSIFRTLGS-IYMNAGMVEEAELAFMRAQEFLGFDHGRHPFYFLMRQ 301
Query: 169 LY---------RIWK------HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213
R+WK Y +T N Y+ M+ L KL D ++ + W +
Sbjct: 302 FASIGNLRGVNRVWKDIKMTFSYNRT----NFSYLLMLQCLYKLGDTDRMKEIYKEWEYR 357
Query: 214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
YD L + L AH +NG+ +A+ L + + G
Sbjct: 358 YENYDPRLTNMLTRAHLRNGMTNEAELLWEKVKERGG 394
>gi|125541465|gb|EAY87860.1| hypothetical protein OsI_09282 [Oryza sativa Indica Group]
Length = 517
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKL---------LRQCLFF--GVGKAEMVVQEMKDMGFA 58
RL LI +VHG QAE Y+ +S L C V KAE + E++ G
Sbjct: 123 RLELIAKVHGTSQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYGLP 182
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+M L T EK+ +++ M+ +I + + I +A A S + +
Sbjct: 183 VDPHSFNEIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQSA 242
Query: 119 INMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFEL---- 165
++ + + ++ L + A+ L+ +E +++ +F +
Sbjct: 243 FKEMLNDDMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTCYA 302
Query: 166 ----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
+D + R+W+ ++ YM+ M L+K+ D+ AE T +W +++ +D
Sbjct: 303 ALNDRDGVIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHDVR 362
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ A+ +NG +EKA+ L H
Sbjct: 363 VSNVLLGAYVRNGWIEKAERLHLH 386
>gi|326520694|dbj|BAJ92710.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 419
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 106/262 (40%), Gaps = 30/262 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
R++LI +V G AE +F+ + + + + KAE + Q MKD
Sbjct: 139 RIDLITKVFGANAAEDFFEKLPPAAKSLEAYTALLHSYARSKMIDKAERLFQRMKDADLP 198
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ L E++ ++++ D FT +R SA A+ D+ I
Sbjct: 199 IDVLVYNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISASVASMDLEAFKGI 258
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSSN----AFEL------ 165
++ +P + L LA + A ++ L+ + S ++L
Sbjct: 259 LDEMSKDPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEAEAKISQREWITYDLLVILHA 318
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDF 219
D++ IWK T +++ ++ Y+ ++ L +K A + W +P +D
Sbjct: 319 GLGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAGVVDQWQRSKVPEFDV 378
Query: 220 GLPSSLIDAHCKNGLLEKAQSL 241
+ L DA G + A S
Sbjct: 379 SACNRLFDALLAAGFTDTADSF 400
>gi|357440753|ref|XP_003590654.1| WD repeat-containing protein [Medicago truncatula]
gi|355479702|gb|AES60905.1| WD repeat-containing protein [Medicago truncatula]
Length = 562
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 39/270 (14%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLR-----QCLFFG------VGKAEMVVQEMKDMGFA 58
+L+LI +V G+ AE +F+++ +R L KAE ++ +M + GF
Sbjct: 111 QLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLTNKAEALMSKMSECGFL 170
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
R + MM L G EK+ L E++ + + D T + +A A+ +D+ +++
Sbjct: 171 RSPVPYNRMMSLYISNGKLEKVPKLFEELKVNT-SPDVVTFNLLLTACASENDVETAERV 229
Query: 119 I---NMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIA--TKRNSSNAFE 164
+ + +P V L + L A + LK+ E + T+ S+
Sbjct: 230 LLQLKKAKVDPDWVTYSTLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLS 289
Query: 165 LK------DQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKN 214
L D++ RIW G+ + F K Y+ M+ L+KL D G E + W S +
Sbjct: 290 LHANMGNVDEVNRIW---GKMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKEWESVS 346
Query: 215 LPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
D + + L+ ++ G +E A+ N
Sbjct: 347 GTNDVRVSNLLLTSYVDQGQMEMAEIFCNQ 376
>gi|326531954|dbj|BAK01353.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 518
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFF----------GVGKAEMVVQEMKDMGF 57
+RL+LI +VHG QAE Y++ + + R+ F V KAE + ++ +G
Sbjct: 120 ARLDLIAKVHGTSQAEEYYNKLPNSASREAASFPLLHCYVAERNVQKAESFMASLQSIGL 179
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
MM L T EK+ +++ M+ +I + + + +A + SD+ +
Sbjct: 180 PVDPHSFNEMMKLYVATCEYEKVFSVIDLMKRNNIPRNALSYNLWMNA-CSVSDVTSVQS 238
Query: 118 IINMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFEL--- 165
+ ++ + + ++ L ++M A L+ +E ++T + +F +
Sbjct: 239 VFKEMVNDGTIEVGWSTYCTLANIFMKHGLNSKAFACLRTAETKLSTAQRLGYSFVMTCY 298
Query: 166 -----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
D + R+W+ ++ + YM+ + L+K+ D+ AE +W + +D
Sbjct: 299 AALGDSDGVMRLWEASKCVPGRIPSANYMSAILCLIKVGDIDRAEWIFGSWEVECRKHDV 358
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ + L+ A+ +NG +EKA+ L H K G
Sbjct: 359 RVSNVLLGAYVRNGWIEKAEKLHLHMLEKGG 389
>gi|449506007|ref|XP_004162627.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 610
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK-----------LLRQCLFFGVGKAEMVVQEMKDMGF 57
SR++LI +V G+ +AE Y I K L + V KAE V ++KD+ F
Sbjct: 215 SRVHLIAKVQGLHKAESYIAKIPKSFQGEVVHRALLANYVVANNVEKAEEVFNKIKDLEF 274
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
+I+ Y M++ Y +R KI ++L ME+++I FT I ++DI GM++
Sbjct: 275 PM-SIFAYNQMLVLYKKIDRRKIADVLLLMEKENIKPCPFTYKILIDGKGLSNDISGMEQ 333
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLI-ATKRNSSNA------------ 162
+++ ++ + LD + L++L Y++ + K++ ++ + +SN
Sbjct: 334 VVDSMKAE-GIELDVSTLSLLAKHYVSCGLKVKAKAILKEIEETNSNGPQWLCRILLPFY 392
Query: 163 --FELKDQLYRIWK 174
+++D++ R+W+
Sbjct: 393 GKLQMEDEVRRLWE 406
>gi|359484901|ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial [Vitis vinifera]
Length = 396
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 112/263 (42%), Gaps = 31/263 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
R++L+ V G++ AE YF+ + + + KAE + + +K+
Sbjct: 118 RIDLMTRVFGIDAAERYFEGLPSAAKTSETYTALLHSYAGAKLAEKAEELYERIKESNVP 177
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G EK+ ++ E++ + + D FT + S+ AA DI G+ +I
Sbjct: 178 LNILLYNEMMTLYMSVGQVEKVSLVVEELKRQKVVPDLFTYNLWVSSCAATLDIDGVRRI 237
Query: 119 I----NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL--------- 165
+ N + +N V NL + + + S ++ N++ +
Sbjct: 238 LKEMSNNSSANDGWVRYRNLANIYIMAGHLVNSASNSVVEAGTNTTQRDWITYDFLIILY 297
Query: 166 -----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNW-TSKNLPYD 218
KD++ +IWK T+ K+ ++ Y+ ++ + L +K + W S +D
Sbjct: 298 AGLGNKDKIDQIWKSLKMTKQKIKSRSYVCILSSYVMLGHIKDVGIVIDEWKKSTTTDFD 357
Query: 219 FGLPSSLIDAHCKNGLLEKAQSL 241
+ L+DA + L+E+A++
Sbjct: 358 ISVFYRLLDAFAELRLIEEAETF 380
>gi|357163843|ref|XP_003579864.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Brachypodium distachyon]
Length = 422
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 38/266 (14%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
R++LI +V G AE +F+ + + + KAE + + MKD +
Sbjct: 142 RIDLITKVFGANAAEDFFEKLPSEAKSLEAYTALLHSYARSKMTDKAERLFERMKDADLS 201
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G +K+ A+ E++ ++++ D FT +R SA AA+ D+ I
Sbjct: 202 IDVLVYNEMMTLYISVGELDKVPAVAEELKRQNVSPDLFTYNLRISASAASMDLEIFKGI 261
Query: 119 INMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSS--------------- 160
++ +P + L LA + A ++ L+ + S
Sbjct: 262 LDEMSKDPNSNEGWTLYRNLATIYVNASQLVSSGNSLVEAEAKISQREWITYDFLILLHT 321
Query: 161 ---NAFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
N +KD IWK T +++ ++ Y+ ++ L +K A++ + W P
Sbjct: 322 GLGNLERVKD----IWKSMQMTSQRMTSRNYICVLSSYLMCGQLKDAKEIVDQWQRSKAP 377
Query: 217 -YDFGLPSSLIDAHCKNGLLEKAQSL 241
+D + L DA G + A S
Sbjct: 378 EFDISACNRLFDALLGAGFTDTADSF 403
>gi|218188053|gb|EEC70480.1| hypothetical protein OsI_01546 [Oryza sativa Indica Group]
Length = 484
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 111/278 (39%), Gaps = 44/278 (15%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-------------CLFFGVGKAEMVVQEMKDMGF 57
L L++ V+G+E AE YF I R C KA + + M ++G
Sbjct: 123 LELLYSVYGIEAAEEYFSGIPSFTRDQNHRTYGALLNCYCSAKMEEKATNIYRRMDELGI 182
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM-D 116
T +M L G K L EM+E+++ D+ T I ++AA + I + +
Sbjct: 183 PSSTKLMNNLMGLYLELGQHSKAANLFDEMKERNVQPDELTCCILMRSHAAHNKIDTVKE 242
Query: 117 KIINMTESN-PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY----- 170
NM+ + P+ F L +YM M++++E L + F+ +
Sbjct: 243 TFYNMSLLDVPKQWSIFRTLGS-IYMNAGMVEEAE-LAFMRAQEFLGFDHGRHPFYFLMR 300
Query: 171 ------------RIWK------HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212
R+WK Y +T N Y+ M+ L KL D ++ + W
Sbjct: 301 QFASIGSLRGVNRVWKDIKMTFSYNRT----NFSYLLMLQCLYKLGDTDRMKEIYKEWEY 356
Query: 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ YD L + L AH +NG+ +A+ L + + G
Sbjct: 357 RYENYDPRLTNMLTRAHLRNGMTNEAELLWEKVKERGG 394
>gi|449474117|ref|XP_004154078.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like, partial [Cucumis sativus]
Length = 263
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK-----------LLRQCLFFGVGKAEMVVQEMKDMGF 57
SR++LI +V G+ +AE Y I K L + V KAE V ++KD+ F
Sbjct: 71 SRVHLIAKVQGLHKAESYIAKIPKSFQGEVVHRALLANYVVANNVEKAEEVFNKIKDLEF 130
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
+I+ Y M++ Y +R KI ++L ME+++I FT I ++DI GM++
Sbjct: 131 PM-SIFAYNQMLVLYKKIDRRKIADVLLLMEKENIKPCPFTYKILIDGKGLSNDISGMEQ 189
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLI-ATKRNSSNA------------ 162
+++ ++ + LD + L++L Y++ + K++ ++ + +SN
Sbjct: 190 VVDSMKAE-GIELDVSTLSLLAKHYVSCGLKVKAKAILKEIEETNSNGPQWLCRILLPFY 248
Query: 163 --FELKDQLYRIWK 174
+++D++ R+W+
Sbjct: 249 GKLQMEDEVRRLWE 262
>gi|15229734|ref|NP_187743.1| Pentatricopeptide repeat-containing protein-like protein
[Arabidopsis thaliana]
gi|12322893|gb|AAG51431.1|AC008153_4 hypothetical protein; 1030-2613 [Arabidopsis thaliana]
gi|332641512|gb|AEE75033.1| Pentatricopeptide repeat-containing protein-like protein
[Arabidopsis thaliana]
Length = 359
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFGVGKAEMVVQEMKDMGFARRTIYCYI 66
+R LI V G+E+AE YF++I + LR + L+ + ++ E K + A R
Sbjct: 80 SARFQLIENVLGLEEAEKYFESIPENLRGESLYTALLRSYAKRSEKKYLDRASRIHIQED 139
Query: 67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
I ++ G R+K+D + EM+E +I+ D+ T+ YAAASD+ M++ +
Sbjct: 140 ERISSF--GTRDKVDESLREMKESNIDLDRLTVNKALRVYAAASDVAAMERFL 190
>gi|224137686|ref|XP_002322619.1| predicted protein [Populus trichocarpa]
gi|222867249|gb|EEF04380.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 42/269 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SRL+LI +V G+++AE+Y + I K LL C+ KA V +MKD+
Sbjct: 77 SRLDLIAKVRGLQKAEVYIEKIPKSLKGEVIYRTLLANCVSANNAKKAVEVFNKMKDLEL 136
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T++ Y ++L Y +++KI ++L ME++++ FT + ++DI GM++
Sbjct: 137 PI-TLFSYNQLLLLYKRHDKKKIADVLLSMEKENVKPSLFTYILLIDTKGQSNDIAGMEQ 195
Query: 118 IINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNSSNAFELK-- 166
I ++ + D A+ L A +LK+ EG + + F L
Sbjct: 196 IAETMKAEG-IEPDIKTQAIMARHYVSGGLKEKAEIVLKEMEGGNLEEHRWACQFMLPLY 254
Query: 167 ------DQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGA----EKTLRNWTSKNL 215
D++ R+WK ++ ++ + G L K+ + + KT + +SK+
Sbjct: 255 GTLGKADEVSRLWKFCKKSPRLDECMAAIEAWGQLKKIPEAEAVFELMSKTWKKLSSKHY 314
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
S+L+ + N +L K + LI
Sbjct: 315 -------SALLKVYANNKMLSKGKDLIKQ 336
>gi|255563224|ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538091|gb|EEF39702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 426
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 117/262 (44%), Gaps = 31/262 (11%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNISKLLRQC--------LFFGV---GKAEMVVQEMKDMG 56
+R++L+ +V G++ AE YF+ + ++ + GV GKAE + + +K
Sbjct: 146 ATRIDLMTKVFGIDAAERYFEGLPITVKTSETYTALLHSYAGVKQLGKAEELYERIKGSN 205
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
+ + MM L G EK+ ++ E++ + I D FT + S+ AA +I +
Sbjct: 206 LSFTALTYNEMMTLYMSVGQVEKVSLVVEELKRQKIAPDIFTYNLWISSCAAILNIDQVT 265
Query: 117 KIINMTESNPQMVLDF----NLLAVLLYMAMTMLKKSEGLIATKRNSSN----------- 161
+I++ + + D+ ++ + + + +S ++ +++ +
Sbjct: 266 RILDEMKHDSGCNDDWLRYIDIANIYVKAGHLVNTESSAVVEAEKSITQREWITYDFLII 325
Query: 162 ---AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNW-TSKNLP 216
KD++ +IWK T+ K+ N+ ++ ++ + L +K A + L W S
Sbjct: 326 LYAGLRDKDKVDQIWKSLRMTKQKMTNRNFVCILSSYMMLGHLKEAGEVLDQWKKSTTTD 385
Query: 217 YDFGLPSSLIDAHCKNGLLEKA 238
+D S L+DA +GL E A
Sbjct: 386 FDLSACSRLLDAFSGSGLTEIA 407
>gi|297834428|ref|XP_002885096.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
lyrata]
gi|297330936|gb|EFH61355.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
lyrata]
Length = 605
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVVQEMKDMGF 57
S+L+L+ +VH +++AE + +I + LL C+ V KAE + +MK++ F
Sbjct: 209 SQLDLVAKVHSLQKAENFLKDIPESFRGEVVYRTLLANCVLKHHVNKAEDLFNKMKELKF 268
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +R+KI ++L ME ++I + T ++ A DI GM+K
Sbjct: 269 PTSVFACNQLLLL-YSMHDRKKISDVLLLMERENIKPSRGTYQFLINSKGLAGDITGMEK 327
Query: 118 IINM-----TESNPQM---VLDFNLLAVLLYMAMTMLKKSEG 151
I+ E +P++ + + + A L A ++K+ EG
Sbjct: 328 IVETMKEEGIEVDPELQATLAKYYIRAGLKERAQDLMKEIEG 369
>gi|356536769|ref|XP_003536907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Glycine max]
Length = 516
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLR-----QCLFFG------VGKAEMVVQEMKDMGFAR 59
L+LI +V G+ AE +F+++ +R L V KAE ++ +M +
Sbjct: 120 LDLITKVRGLNSAEKFFEDLPDRMRGKQTCSALLHAYVQNNLVDKAEALMLKMSECDLLI 179
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
+ M+ L G EK+ ++ E++ + + D T + +A A+ +D+ ++++
Sbjct: 180 NPLPYNHMISLYISNGKLEKVPKIIQELKMNT-SPDIVTFNLWLAACASQNDVETAERVL 238
Query: 120 ---NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIA-----TKRNSSNAFEL------ 165
+ +P V L LY+ L+K+ + T R + A+
Sbjct: 239 LELKKAKIDPDWVTYSTLTN--LYIKNASLEKAGATVKEMENRTSRKTRVAYSSLLSLHT 296
Query: 166 ----KDQLYRIW-KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
KD + RIW K RK+ + Y+ M+ LLKL D GAE R W S + D
Sbjct: 297 NMGNKDDVNRIWEKMKASFRKMNDNEYICMISSLLKLGDFAGAEDLYREWESVSGTNDVR 356
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ ++ +E A+ N
Sbjct: 357 VSNILLGSYINQDQMEMAEDFCNQ 380
>gi|224072985|ref|XP_002303946.1| predicted protein [Populus trichocarpa]
gi|222841378|gb|EEE78925.1| predicted protein [Populus trichocarpa]
Length = 451
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 120/265 (45%), Gaps = 37/265 (13%)
Query: 11 LNLIFEVHGVEQAEIYFDNISK----------LLRQCL-FFGVGKAEMVVQEMKDMGFAR 59
L+ I +V G+ +AE + + I + LL C+ + KAE V ++M+D+G
Sbjct: 57 LDCIAKVLGLWKAEKFIEKIPESFRGKLVYQTLLASCVSVLNIKKAESVFRKMRDLGLPI 116
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
C M+I+ Y ++KI ++L M++++I T + A +D GM+K++
Sbjct: 117 TVEACEQMIII-YKRLEKKKIPNILLMMKDQNIKPSFLTYKLLIDAKCQFNDTTGMEKLV 175
Query: 120 NMTESNPQMVLDFNLLAVLL--YMAMTMLKKSE-------------GLIATKRNSSNAFE 164
N M LD LAV+ Y+++ + K++ G + +R+ + +
Sbjct: 176 EAMR-NEGMELDVFALAVIARHYISVGLKDKADLILKQIEKRKQKGGGLGARRSLLSLYA 234
Query: 165 L---KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKG-AEKTLRNWTSKNLPYDF 219
D++ RIWK ++ + G L K+++ + +E L+ W + F
Sbjct: 235 SLGNADEVGRIWKECKADPKQSECIAAIRAWGKLGKVEEAEAVSEMMLQTWKNPT----F 290
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINH 244
G +SL++ + N L K + L+
Sbjct: 291 GYYTSLLNVYIDNNLTSKGKDLVEQ 315
>gi|15240937|ref|NP_198098.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214236|sp|Q3E911.1|PP400_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27460
gi|332006308|gb|AED93691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 41/272 (15%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGK------------------AEMV 48
I RL+LI + HG++Q E YF+ KLL + V K AE +
Sbjct: 109 IALRLDLIIKTHGLKQGEEYFE---KLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEAL 165
Query: 49 VQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA 108
++++ +GF MM L +G EK+ ++ M+ I + + + +A
Sbjct: 166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225
Query: 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNS 159
S + ++ + + + + ++ L L +Y+ A +L+ +E ++ + N
Sbjct: 226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKML-NRSNR 284
Query: 160 SNAFEL---------KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
F L K+ + R+W+ ++ Y+ ++ L+K D++ AE+
Sbjct: 285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344
Query: 210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241
W ++ YD + + L+ A+ +NG + KA+SL
Sbjct: 345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESL 376
>gi|388512893|gb|AFK44508.1| unknown [Medicago truncatula]
Length = 244
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 138 LLYMAMTMLKKSEGLIATKRNSSNAFEL--------KDQLYRIWKHYGQT-RKVFNKGYM 188
L A LKK+EG I + + L KD++YR+W +Y + N GY
Sbjct: 3 LFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYH 62
Query: 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
++ L+++DD++GAEK W S D + + LI + K G +K S H
Sbjct: 63 AIISSLVRMDDIEGAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKH 118
>gi|449458295|ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial-like [Cucumis sativus]
gi|449518825|ref|XP_004166436.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial-like [Cucumis sativus]
Length = 474
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 32/267 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RL+LI +V+GV AE YF ++ + +G KA + ++M ++ +
Sbjct: 82 RLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGALLNCYCKEMMEEKALTLFKKMDELKIS 141
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +M + + + EK+ L+ EM+++ FT + ++ A+ +DI +++I
Sbjct: 142 TSLSFNNLMTMYMRM-DHPEKVPPLIGEMKQRGFYLTTFTYNVWMNSCASLNDIGKVEEI 200
Query: 119 INMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFELKDQL 169
+ + + D+ + L Y+ A LKK E + + +N + L
Sbjct: 201 LEEMKMEDRNKFDWTTYSNLASFYVKAGQFEKAELALKKLEEEMKSDKNDRLVYHCLISL 260
Query: 170 Y----------RIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
Y RIW N Y+ M+ L KL D++G ++T + W S +D
Sbjct: 261 YASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLKDIEGLKRTYKEWESNCRNFD 320
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHA 245
+ + +I A+ + + E A + A
Sbjct: 321 LRIVNDIIGAYLQQDMYEDAAMIFEDA 347
>gi|356554749|ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Glycine max]
Length = 399
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 31/263 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
R++L+ +V G++ AE YF+ + + + KAE + Q +KD +
Sbjct: 123 RIDLMTQVFGIDAAERYFEGLPLATKTTETYTALLHSYAGAKLTEKAEELYQRIKDSNLS 182
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G EK+ ++ E++++ ++ D FT + S+ AA +I + +I
Sbjct: 183 FDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKVSPDIFTYNLWISSCAAILNIDEVRRI 242
Query: 119 INMTE----SNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN------------- 161
++ SN + NL + + +A S L+ T++ +
Sbjct: 243 LDEMSHGAGSNESWIRYLNLANIYISVAHLDNASSNTLVETEKRITQRQWITYDFLIILY 302
Query: 162 -AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNW-TSKNLPYD 218
KD+L +IW G T+ K+ ++ YM ++ L L K + + W S +D
Sbjct: 303 GGLGSKDKLDQIWNSLGMTKQKMISRNYMCIISSYLMLGLTKEVGEVIDQWKQSTTTDFD 362
Query: 219 FGLPSSLIDAHCKNGLLEKAQSL 241
++ A GL E A +L
Sbjct: 363 MLACKKILVAFRDIGLAEIANNL 385
>gi|168063926|ref|XP_001783918.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664548|gb|EDQ51263.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 448
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KA+ +++++K G MM+L G K+ ++ +M+ + D +T I
Sbjct: 108 KADALLEKLKGTGILTLPFAFNQMMLLYKRKGMMNKVTEILADMKTHGVPKDVYTYNILM 167
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLD---------FNLLAVLLYMAMTMLKK-SEGLI 153
A + DI GM+KI ++ + D F + A LL A + LK+ EG +
Sbjct: 168 DVKARSGDIEGMEKIFEELSADENVKADAATFGTLATFCVHAGLLDKARSYLKEMEEGDV 227
Query: 154 ATKRNS-----SNAFELKDQ--LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKT 206
R++ S + DQ + R+W+ V N+ Y+T++ KL V+ AE+
Sbjct: 228 FRNRSAYDILISQYGAVGDQEGVERVWEKVKSGPVVSNRSYITVIEAFGKLGMVEKAEE- 286
Query: 207 LRNWTSKN----LPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
L SK+ L F +SL+ A+ + GL+EKA+ L+
Sbjct: 287 LYGIMSKSKGLILSRQF---NSLLSAYARQGLMEKAEKLV 323
>gi|414586983|tpg|DAA37554.1| TPA: hypothetical protein ZEAMMB73_139718 [Zea mays]
Length = 423
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-----CLFFGVGK------AEMVVQEMKDMGFA 58
R++LI +V G AE +F+ + + L G+ AE + + MKD
Sbjct: 128 RIDLITKVFGASAAEDFFEKLPPGAKSLEAYTALLHSYGRSKMTDRAERLFERMKDASLP 187
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G K++A+ E++ ++++ D FT +R SA AA+ D+ G +
Sbjct: 188 MDALVYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAASMDLEGFRAV 247
Query: 119 INMTESNPQ 127
++ +P+
Sbjct: 248 LDEMSRDPK 256
>gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 525
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLR---QCLFFG--------VGKAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++ +R C KAE + ++M + GF +
Sbjct: 129 LDLISKIRGLNSAEKFFEDLPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLK 188
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ + G EK+ L+ E++ K+ + D T + +A+A+ +D+ G +K+
Sbjct: 189 SCLPYNHMLSMFISKGQFEKVSVLIKELKMKT-SPDIVTYNLWLTAFASGNDVEGAEKVY 247
Query: 119 INMTES--NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL----- 165
+ ES NP V +++L L L A LK+ E L++ K + A +
Sbjct: 248 LKAKESKLNPDWV-TYSVLTNLYAKTDNLEKAKLALKEMEKLVSKKNRVAYASLISLHAN 306
Query: 166 ---KDQLYRIWKHYGQTRKVFNKG-YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
KD + WK + K N Y++M+ ++KL + + A+ W S + D +
Sbjct: 307 LGDKDGVNLTWKKVRSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARI 366
Query: 222 PS 223
P+
Sbjct: 367 PN 368
>gi|414884017|tpg|DAA60031.1| TPA: hypothetical protein ZEAMMB73_016344 [Zea mays]
Length = 703
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 40/265 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
S L+LI +GVE A+ Y + + + R + + KAE V E++++
Sbjct: 319 SHLDLIARNYGVEAAQKYIERVPEAFRSEVLYETLLVNCVCRDDAQKAEQVFNEIRELSL 378
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C M++L Y +R K+ ++ ME+++I FT + ++DI GM++
Sbjct: 379 PLTISACNQMLLL-YKRVSRNKVVDILTLMEKENIKYSIFTYKLMIDLKVRSNDILGMEQ 437
Query: 118 IIN-MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI-----ATKRNSSNAFELKDQLYR 171
++N M E+ + + Y++ +K+E +I K N L D LY
Sbjct: 438 VLNSMKENGLEPNFTIQTMVAKFYISGCFTEKAEEVINAMEVHVKANRHAVRSLLD-LYA 496
Query: 172 IWKHYGQTRKVFN-------KGYMTMMGLLLKLDDVKGAE-------KTLRNWTSKNLPY 217
I +V+N + ++ + KL ++ AE KT TSK
Sbjct: 497 ILGRPVDVERVWNLCAEPKLEDFLAAIKAWSKLGHIERAEEIFDVLVKTFPKLTSKYF-- 554
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLI 242
+++++ + +N LL+K++ I
Sbjct: 555 -----NAMLEVYAENKLLDKSKKFI 574
>gi|449506017|ref|XP_004162629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 608
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK-----LLRQCLFFG------VGKAEMVVQEMKDMGF 57
SRL+LI +V G+ +AE Y I + ++ + L V KAE V +MKD+ F
Sbjct: 213 SRLDLIAKVQGLPKAESYIAKIPQSFQGEVIHRTLLANYVAANNVKKAEEVFNKMKDLEF 272
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T + + M++ Y ++ K+ ++ ME++++ FT I A +DI GM++
Sbjct: 273 PM-TPFAHDQMLILYKRIDKRKLADILSLMEKENVKPSPFTYKILIDAKGLCNDISGMEQ 331
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIAT-KRNSSN------------- 161
+++ ++ + D + L++L Y++ + K++ ++ + N+S
Sbjct: 332 VVDSMKAE-GIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPCRILLPLY 390
Query: 162 -AFELKDQLYRIWK 174
A +++D++ R+WK
Sbjct: 391 GALQMEDEVRRLWK 404
>gi|449437992|ref|XP_004136774.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 604
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK-----LLRQCLFFG------VGKAEMVVQEMKDMGF 57
SRL+LI +V G+ +AE Y I + ++ + L V KAE V +MKD+ F
Sbjct: 209 SRLDLIAKVQGLPKAESYIAKIPQSFQGEVIHRTLLANYVAANNVKKAEEVFNKMKDLEF 268
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
T + + M++ Y ++ K+ ++ ME++++ FT I A +DI GM++
Sbjct: 269 PM-TPFAHDQMLILYKRIDKRKLADILSLMEKENVKPSPFTYKILIDAKGLCNDISGMEQ 327
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIAT-KRNSSN------------- 161
+++ ++ + D + L++L Y++ + K++ ++ + N+S
Sbjct: 328 VVDSMKAE-GIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPCRILLPLY 386
Query: 162 -AFELKDQLYRIWK 174
A +++D++ R+WK
Sbjct: 387 GALQMEDEVRRLWK 400
>gi|449457829|ref|XP_004146650.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 222
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236
+D+KGAE+ + W ++ L YD +P+ L+DA+C+ GL+E
Sbjct: 183 NDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 221
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 25 IYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDAL 83
IY I L+ F G A V++EMK+ G A I+CY +I+ R ++ +
Sbjct: 454 IYTTLIKTFLQNSRF---GDAMRVLKEMKEQGIAP-DIFCYNSLIIGLSKAKRMDEARSF 509
Query: 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII-NMTESN--PQMVLDFNLLAVLLY 140
++EM E + + FT G S Y AS+ DK + M E P VL
Sbjct: 510 LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL---------- 559
Query: 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKG-------YMTMMGL 193
GLI N + K+++ Y R + ++G Y +M
Sbjct: 560 --------CTGLI-------NEYCKKEKVIEACSAY---RSMVDQGILGDAKTYTVLMNG 601
Query: 194 LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
L K D V AE+ R K + D LI+ K G ++KA S+ +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
>gi|5103846|gb|AAD39676.1|AC007591_41 F9L1.43 [Arabidopsis thaliana]
Length = 623
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 38/226 (16%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGFA 58
RL+LI +V G + E Y I + R L + V AE V +MKD+GF
Sbjct: 229 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 288
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T C M+IL Y +++KI ++L +E++++ + T I +++DI GM++I
Sbjct: 289 LSTFTCNQMLIL-YKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQI 347
Query: 119 INMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKRNSS---------------N 161
+ +S + LD A++ Y + + +K+E ++ S
Sbjct: 348 VETMKSE-GVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 406
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLL---KLDDVKGAE 204
+ +D++ R+WK + N Y ++ +L K+D VK AE
Sbjct: 407 YLQREDEVRRVWKICEE-----NPRYNEVLAAILAFGKIDKVKDAE 447
>gi|145335742|ref|NP_173001.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806396|sp|Q9XI21.2|PPR44_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15480, mitochondrial; Flags: Precursor
gi|332191207|gb|AEE29328.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 594
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 38/226 (16%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGFA 58
RL+LI +V G + E Y I + R L + V AE V +MKD+GF
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T C M+IL Y +++KI ++L +E++++ + T I +++DI GM++I
Sbjct: 260 LSTFTCNQMLIL-YKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQI 318
Query: 119 INMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKRNSS---------------N 161
+ +S + LD A++ Y + + +K+E ++ S
Sbjct: 319 VETMKSEG-VELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 377
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLL---KLDDVKGAE 204
+ +D++ R+WK + N Y ++ +L K+D VK AE
Sbjct: 378 YLQREDEVRRVWKICEE-----NPRYNEVLAAILAFGKIDKVKDAE 418
>gi|388490914|gb|AFK33523.1| unknown [Lotus japonicus]
Length = 358
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 30/222 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNI------SKLLRQCLFFGVG-----KAEMVVQEMKDMGFA 58
R++L+ +V G++ AE YF+ + S+ L G KAE + Q +KD +
Sbjct: 124 RIDLMTKVFGIDAAERYFEALPVAAKTSETYTALLHSYAGAKMTEKAEELYQRIKDSNLS 183
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G EK+ +++ E+++++++ D FT + S+ AA +I + +I
Sbjct: 184 FDALTYNEMMTLYMSVGQVEKVPSVVEELKQRNVSPDIFTYNLWISSCAATLNIDEVRRI 243
Query: 119 INM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL--------- 165
++ +SN NL V + + S L T++ + + +
Sbjct: 244 LDEMSHGADSNESWTRYLNLANVYVTASRLDNSSSNSLAETEKRITQSQWITYDFLIILY 303
Query: 166 -----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVK 201
KD+L +IW T+ K+ N+ Y ++ L L VK
Sbjct: 304 AGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLGHVK 345
>gi|357119107|ref|XP_003561287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Brachypodium distachyon]
Length = 576
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 111/261 (42%), Gaps = 35/261 (13%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGFAR 59
L+LI G+E A Y D + K R + + + KAE V +E++D+
Sbjct: 183 LDLIARNTGIEDARKYIDRVPKPFRNEVLYETLLVNCVRARDIQKAEEVFREIRDLSLPL 242
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
C M++L Y R K+ +++ ME+++I FT + ++DI G++ +
Sbjct: 243 TVSACNQMILL-YKRVARTKVADIIMLMEKENIKPSPFTYKLIIDLKGRSNDISGVEVTL 301
Query: 120 NMTES---NPQMVLDFNLLAVLLYMAMTMLKKSEGLIAT--------KRNSSN------- 161
N ++ P V + Y++ +++K++ +++ KR++
Sbjct: 302 NEMKAAGVEPDFVT--QTMVAKFYISGGLIEKAKAVVSEIEMEYMKDKRHAVRSLLHLYA 359
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
A D++ RIWK + + +M + KL ++ AE+T
Sbjct: 360 ALSKPDEVARIWKLCTEPKL---DDFMAAIEAWGKLGCIEQAEETFEAMLEATQKLSSKY 416
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
+ +++ + +N L++K + +
Sbjct: 417 YNGMLNVYAENKLMDKGKKFV 437
>gi|297729251|ref|NP_001176989.1| Os12g0531500 [Oryza sativa Japonica Group]
gi|255670362|dbj|BAH95717.1| Os12g0531500 [Oryza sativa Japonica Group]
Length = 352
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 160 SNAFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
S + + L R+W+ +T RK + Y M+ L + D+ AE W S + D
Sbjct: 131 STSLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRD 190
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINH 244
+P++++ + KNG++EKA+ ++H
Sbjct: 191 SRIPNTILAFYIKNGMMEKAEGFLDH 216
>gi|224084592|ref|XP_002307350.1| predicted protein [Populus trichocarpa]
gi|222856799|gb|EEE94346.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 114/269 (42%), Gaps = 29/269 (10%)
Query: 11 LNLIFEVHGVEQAEIYFDNIS-----KLLRQCLFFG------VGKAEMVVQEMKDMGFAR 59
+ LI +V+G+ +A YF+ I K L G + KAE + ++ G
Sbjct: 121 MELIVKVNGLNKAGEYFERIPGSGSKKAASLPLLHGYVKERDISKAESFMIKLSSSGLLV 180
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
MM L EK+ ++ EM+ + + + + A+ ++ + +
Sbjct: 181 TPHPYNEMMKLYMALSQYEKVPLVIAEMKRNKLCRNVLSYNLWMGAFGEVFEVAKAEMVY 240
Query: 120 NMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFEL----- 165
S+ + + ++ LA L +Y+ A+ +LK +E ++T F +
Sbjct: 241 KEMVSDENVGVGWSTLASLANVYIKAGFVDKALLVLKDAEMKLSTNGRLGYFFLITLYSS 300
Query: 166 ---KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K+ + R+W+ ++ YM ++ L+K+ D+ AE+ W + YD +
Sbjct: 301 LKNKEGVLRLWEASKAVGGRIPCADYMCVISCLVKVGDLVAAEQVFAEWETNCFKYDIRV 360
Query: 222 PSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ L+ A+ +NGL+ KA+S H + G
Sbjct: 361 SNVLLGAYVRNGLMGKAESFHLHTVERGG 389
>gi|168006155|ref|XP_001755775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693094|gb|EDQ79448.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 19/221 (8%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP 103
KA +++++K G MM+L G K+ ++ +M+ + D +T I
Sbjct: 68 KAGALLEKLKSTGLLTLPFSFNQMMLLYKRKGMENKLPEILEDMKAHGVPKDVYTYNILM 127
Query: 104 SAYAAASDIHGMDKIINMTESNPQMVLD---FNLLAV------LLYMAMTMLKK-SEGLI 153
+ + DI GM+KI +++ + D F LA LL A LK+ EG I
Sbjct: 128 DVKSRSGDIEGMEKIFEELKADENVKADAATFGTLATACVHAGLLEKAKVYLKEMEEGDI 187
Query: 154 ATKRNSSN-------AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKT 206
R++ + A D + R+W+ V N+ Y+T++ KL V+ AE+
Sbjct: 188 FRNRSAYDILISQYGAVGDVDGVERVWEKVKSGPIVSNRSYITVIEAFGKLGMVEKAEEL 247
Query: 207 LRNWT-SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
+ SK L +SL+ A+ + GL++KA+ L++ E
Sbjct: 248 YEVMSQSKGLILSRQF-NSLLSAYTRQGLMDKAEKLMDDME 287
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 91/231 (39%), Gaps = 43/231 (18%)
Query: 25 IYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDAL 83
IY I L+ F G A V++EMK+ G A I+CY +I+ R ++ +
Sbjct: 454 IYTTLIKTFLQNSRF---GDAMRVLKEMKEQGIAP-DIFCYNSLIIGLSKAKRMDEARSF 509
Query: 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII-NMTESN--PQMVLDFNLLAVLLY 140
++EM E + + FT G S Y AS+ DK + M E P VL
Sbjct: 510 LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL---------- 559
Query: 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKG-------YMTMMGL 193
GLI N + K ++ Y R + ++G Y +M
Sbjct: 560 --------CTGLI-------NEYCKKGKVIEACSAY---RSMVDQGILGDAKTYTVLMNG 601
Query: 194 LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
L K D V AE+ R K + D LI+ K G ++KA S+ +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 91/231 (39%), Gaps = 43/231 (18%)
Query: 25 IYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDAL 83
IY I L+ F G A V++EMK+ G A I+CY +I+ R ++ +
Sbjct: 454 IYTTLIKTFLQNSRF---GDAMRVLKEMKEQGIAP-DIFCYNSLIIGLSKAKRMDEARSF 509
Query: 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII-NMTESN--PQMVLDFNLLAVLLY 140
++EM E + + FT G S Y AS+ DK + M E P VL
Sbjct: 510 LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL---------- 559
Query: 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKG-------YMTMMGL 193
GLI N + K ++ Y R + ++G Y +M
Sbjct: 560 --------CTGLI-------NEYCKKGKVIEACSAY---RSMVDQGILGDAKTYTVLMNG 601
Query: 194 LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
L K D V AE+ R K + D LI+ K G ++KA S+ +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
>gi|148906608|gb|ABR16456.1| unknown [Picea sitchensis]
Length = 600
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGF 57
SRL++I ++ G+ + E YF +I +R +G V KAE + ++MK GF
Sbjct: 203 SRLDVITKILGIFKGEKYFASIPSDMRGQRAYGTLLANYSSTCNVEKAEEIFKKMKAEGF 262
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
+ T + Y ++L Y +++KI ++ ME++ + FT I DI GM++
Sbjct: 263 SL-TAFEYNQLLLLYKRLDKKKIQDVLKMMEDEGVKPTIFTYKILIDVKGWMGDIGGMEQ 321
Query: 118 II-NMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKRNSSNAFELKDQLYRI 172
+ NM + +M D L +L Y+ + +K+E ++ N S LKD+ R+
Sbjct: 322 VAENMKSEDIEM--DSGTLELLARHYIRAGLAEKAEVVLKELENVS----LKDKRSRL 373
>gi|297808773|ref|XP_002872270.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318107|gb|EFH48529.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 492
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 41/272 (15%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKA------------------EMV 48
I RL LI + HG++QAE YF+ KLL V K+ E+
Sbjct: 106 ISLRLELIIKTHGLKQAEEYFE---KLLNSSASLRVAKSAYLPLLRSYVKKKMVKEGEVF 162
Query: 49 VQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA 108
++++ +GF MM L +G EK+ ++ M+ I + + + +A
Sbjct: 163 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKVNKIPRNVLSYNLWMNACCQ 222
Query: 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNS 159
S + ++ + + + + ++ L L +Y+ A +L+ +E L+ + N
Sbjct: 223 VSGVTAVETVYREMVGDKSVEVGWSSLCTLANVYIKGGFDEKAKLVLENAEKLL-NRSNR 281
Query: 160 SNAFEL---------KDQLYRIWKHYG-QTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
F L K+ + R+W+ ++ Y+ ++ L+K+ D++ AE+
Sbjct: 282 LGYFFLITLYASLGDKEGVVRLWEASKLVCGRISCANYICVLSSLVKIGDLEEAERVFNE 341
Query: 210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241
W ++ YD + + L+ A+ +NG + KA+SL
Sbjct: 342 WEAQCFNYDVRVSNVLLGAYMRNGEIRKAESL 373
>gi|297829686|ref|XP_002882725.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328565|gb|EFH58984.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 86
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG 233
+ N+GY M+ LLK DDVKGAE+ W K +D +P LI + K G
Sbjct: 12 ICNEGYRIMISSLLKFDDVKGAEEIYGEWKPKGSDFDTRIPCLLISHYSKEG 63
>gi|242043362|ref|XP_002459552.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
gi|241922929|gb|EER96073.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
Length = 421
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
S L+L+ HG+E AE Y + + + R + + KAE V E++++
Sbjct: 37 SHLDLVARNHGIEAAEKYIERVPEAFRSEVLYETLLVNCVCRDDAQKAEQVFNEIRELSL 96
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C M++L Y +R K+ ++ ME ++I FT + ++D GM+
Sbjct: 97 PLTVSACNQMLLL-YKRVSRNKVVDILKLMENENIKPSLFTYKLMIDLKGRSNDTLGMES 155
Query: 118 IINMTESN 125
++N+ + N
Sbjct: 156 VLNLMKEN 163
>gi|125557709|gb|EAZ03245.1| hypothetical protein OsI_25393 [Oryza sativa Indica Group]
Length = 610
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 11 LNLIFEVHGVEQAEIYFDNIS----------KLLRQCLFFG-VGKAEMVVQEMKDMGFAR 59
L+LI HG+E A+ Y + L+ C+ G + KAE V +E+KD+ R
Sbjct: 219 LDLIARSHGIETAQKYIKRVPLPFRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCL-R 277
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ MIL Y K+ ++++ ME++++ FT + ++D+ G++ +I
Sbjct: 278 LTVTLCNQMILLYKRIAPGKVASVLMLMEKENVKPSAFTYRLLIDLKGRSNDLAGIEVVI 337
Query: 120 N--------MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY- 170
N + S MV F + L A ++K+ E ++ ++ + + LY
Sbjct: 338 NEMKAYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYA 397
Query: 171 ---------RIWK 174
RIW+
Sbjct: 398 ALNKPNDVARIWE 410
>gi|449437712|ref|XP_004136635.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 32/225 (14%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVVQEMKDMGF 57
SRL+LI ++ G+ AE Y I K LL C+ V KAE V +MK++ F
Sbjct: 209 SRLDLIGKLRGLRMAENYIAKIPKSFQGEVVYQTLLVNCVIASNVHKAEKVFNKMKNLEF 268
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L T R+ D L+L M+++++ T I ++DI GM++
Sbjct: 269 PITAFACNQLLLLYKRTDKRKIADVLLL-MKKENVKYSTSTYRILIDVNGLSNDITGMEE 327
Query: 118 IINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKR--NSSNA----------- 162
+++ ++ + LD L+ L+ Y++ + K++ ++ NS +
Sbjct: 328 VVDSMKAE-GIKLDVETLSRLVKHYVSGGLKDKAKAILKEMEEINSEGSRWPCRILLPLY 386
Query: 163 --FELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205
+++D++ R+W+ G + + M + KL +++ AEK
Sbjct: 387 GELQMEDEVRRLWEICGSNPHI--EECMAAIVAWGKLKNIQEAEK 429
>gi|15235508|ref|NP_192191.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213327|sp|Q9SY07.1|PP302_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g02820, mitochondrial; Flags: Precursor
gi|4263527|gb|AAD15353.1| hypothetical protein [Arabidopsis thaliana]
gi|7269767|emb|CAB77767.1| hypothetical protein [Arabidopsis thaliana]
gi|332656833|gb|AEE82233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 532
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLR---QCLFFG--------VGKAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++ +R C KAE + ++M + GF +
Sbjct: 136 LDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLK 195
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ + G EK+ L+ E++ ++ + D T + +A+A+ +D+ G +K+
Sbjct: 196 SCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVY 254
Query: 119 INMTES--NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL----- 165
+ E NP V +++L L + A LK+ E L++ K + A +
Sbjct: 255 LKAKEEKLNPDWV-TYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHAN 313
Query: 166 ---KDQLYRIWKHYGQTRKVFNKG-YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
KD + WK + K N Y++M+ ++KL + + A+ W S + D +
Sbjct: 314 LGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARI 373
Query: 222 PS 223
P+
Sbjct: 374 PN 375
>gi|356525847|ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Glycine max]
Length = 395
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 113/272 (41%), Gaps = 32/272 (11%)
Query: 1 MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVV 49
++D Y +R++L +V G++ AE YF+ + + + KAE +
Sbjct: 111 LSDSDY-AARIDLTTKVFGIDAAERYFEGLPLATKTAETYTALLHSYAGAKLTKKAEELY 169
Query: 50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
Q +KD + + MM L G EK+ +++ E++++ ++ D FT + S AA
Sbjct: 170 QRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPDIFTYNLWISYCAAI 229
Query: 110 SDIHGMDKIINMTE----SNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSN---- 161
+I + +I++ SN + NL + + + S L+ T++ +
Sbjct: 230 LNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNASSNTLVETEKRITQRQWI 289
Query: 162 ----------AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNW 210
KD+L +IW T+ K+ ++ Y+ ++ L L K + + W
Sbjct: 290 TYDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLMLGHTKEVGEVIDQW 349
Query: 211 -TSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241
S +D ++ A GL E A +L
Sbjct: 350 KQSTTTDFDMLACKKIMVAFRDMGLAEIANNL 381
>gi|356510143|ref|XP_003523799.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Glycine max]
Length = 530
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 31/272 (11%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ---CLFFGVG--------KAEMVVQEMKDMGFA 58
+L LI E + + +AE YF N+ + CL G KAE + ++ ++G
Sbjct: 129 KLELIIENYDLMEAEEYFMNLPDSAAKKAACLTLLRGYIRVRDTNKAETFMVKLYELGLV 188
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI--NGDQFTLGIRPSAYAAASDIHGMD 116
MM L T K+ +M +M+ + N + L + + ++
Sbjct: 189 LSPHPFNEMMKLYLATCEYRKVPLVMQQMKRNKVPCNVLSYNLWMNACTEEEGYGVAAVE 248
Query: 117 KIINMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFEL-- 165
+ +++ + + ++ LA L A+ +LK +E ++T F +
Sbjct: 249 TVFRQMQNDRNVEVGWSSLATLANAYKKAGQSKKAILVLKDAERKLSTCNRLGYFFLITL 308
Query: 166 ------KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
K+ + R+W+ ++ Y+ ++ L+KL D+ A++ W S YD
Sbjct: 309 YASLKEKEGVLRLWEASKAVGGRISCANYICILICLVKLGDIVQAKRIFLEWESNCQKYD 368
Query: 219 FGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
+ + L+ A+ +NG +E+A+SL H K G
Sbjct: 369 IRVSNVLLGAYARNGSMEEAESLHLHTLQKGG 400
>gi|125599572|gb|EAZ39148.1| hypothetical protein OsJ_23575 [Oryza sativa Japonica Group]
Length = 610
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 11 LNLIFEVHGVEQAEIYFDNIS----------KLLRQCLFFG-VGKAEMVVQEMKDMGFAR 59
L+LI HG+E A+ Y + L+ C+ G + KAE V +E+KD+ R
Sbjct: 219 LDLIARSHGIETAQKYIKRVPLPFRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCL-R 277
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
T+ MIL Y K+ ++++ ME++++ FT + ++D+ G++ ++
Sbjct: 278 LTVTLCNQMILLYKRIAPGKVASVLMLMEKENVKPSAFTYRLLIDLKGRSNDLAGIEVVL 337
Query: 120 N--------MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY- 170
N + S MV F + L A ++K+ E ++ ++ + + LY
Sbjct: 338 NEMKAYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYA 397
Query: 171 ---------RIWK 174
RIW+
Sbjct: 398 ALNKPNDVARIWE 410
>gi|224121676|ref|XP_002330625.1| predicted protein [Populus trichocarpa]
gi|222872229|gb|EEF09360.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 99 LGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKS 149
+ IR +AY A+S+I MDK++N E++P + +D+N L A L+ + +LK++
Sbjct: 5 INIRLNAYVASSNIEEMDKLLNKMETDPLISIDWNTCFVVANGYLKAGLIEKTLALLKRA 64
Query: 150 EGLIATKRNSS 160
E LI R+ S
Sbjct: 65 EQLITQTRDCS 75
>gi|17064738|gb|AAL32523.1| Unknown protein [Arabidopsis thaliana]
gi|27311917|gb|AAO00924.1| Unknown protein [Arabidopsis thaliana]
Length = 532
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLR---QCLFFG--------VGKAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++ +R C KAE + ++M + GF +
Sbjct: 136 LDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLK 195
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ + G EK+ L+ E++ ++ + D T + +A+A+ +D+ G +K+
Sbjct: 196 SCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVY 254
Query: 119 INMTES--NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL----- 165
+ E NP V +++L L + A L++ E L++ K + A +
Sbjct: 255 LKAKEEKLNPDWV-TYSVLTNLYAKTDNVEKARLALREMEKLVSKKNRVAYASLISLHAN 313
Query: 166 ---KDQLYRIWKHYGQTRKVFNKG-YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
KD + WK + K N Y++M+ ++KL + + A+ W S + D +
Sbjct: 314 LGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARI 373
Query: 222 PS 223
P+
Sbjct: 374 PN 375
>gi|226502666|ref|NP_001140872.1| uncharacterized protein LOC100272948 [Zea mays]
gi|194701536|gb|ACF84852.1| unknown [Zea mays]
gi|413924212|gb|AFW64144.1| hypothetical protein ZEAMMB73_253479 [Zea mays]
Length = 525
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 109/265 (41%), Gaps = 29/265 (10%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFFG----------VGKAEMVVQEMKDMGF 57
+RL+LI + + QAE Y++ + S RQ F V KAE + +++ G
Sbjct: 127 ARLDLIAKAYSTSQAEEYYNKLQSPATRQAASFPLLHCYVMERDVQKAETFMAQLQSHGL 186
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
+M L T EK+ +++ M+ +I+ + + + +A A S + +
Sbjct: 187 PVDPHSFNEIMKLYVATCQYEKVLSVIDLMKRNNIHRNVLSYNLWMNACAEVSGVDSVQS 246
Query: 118 IINMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFEL--- 165
+ + ++ + + ++ L + A L K+E ++ +F +
Sbjct: 247 VFQVMLNDETVKVGWSTYCTLANIFRKNGLNNEAQACLVKAEAKLSPAGRLGYSFVMTCY 306
Query: 166 -----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
D + R+W+ ++ YM M +K+ D+ AE W + +D
Sbjct: 307 AALNDSDGVMRMWEASKSVPGRIPTAYYMAAMSCSIKVGDISQAECIFGKWEAGCRKHDV 366
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ A+ +N +EKA+ L H
Sbjct: 367 RVSNVLLGAYVRNRWIEKAERLHLH 391
>gi|255581580|ref|XP_002531595.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528791|gb|EEF30798.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 176
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
EK W S+ L YD +P+ LI + + GL+EKA++ +N A
Sbjct: 19 GEKIFEEWESRKLKYDIRIPNILISTYLRKGLMEKAETFVNRA 61
>gi|224141193|ref|XP_002323959.1| predicted protein [Populus trichocarpa]
gi|222866961|gb|EEF04092.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMG 56
SR++L+ +V GV+ AE YFD + + + + KAE + +K
Sbjct: 80 ASRIDLMTKVFGVDAAERYFDGLPLAAKTTETYTALLHSYAAAKLIEKAEEFYKRIKGSN 139
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
+ MM L G EK+ ++ E++ + + D FT + S+ AAA +I +
Sbjct: 140 LPFTALMYNEMMTLYMSVGQLEKVSQVVEELKHQKVAPDIFTYNLWISSCAAALNIDKVR 199
Query: 117 KIINMTESNPQMVLDF--NLLAVLLYMAMTMLKKSEGLIA---------TKRNSSN---- 161
+I++ + + D+ + V +Y+ L +E A T+R
Sbjct: 200 RILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAESSTAAVVEAEKKITQREWITYDFL 259
Query: 162 -----AFELKDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW-TSKN 214
KD++ +IWK T +K+ ++ ++ ++ L L +K + + W S
Sbjct: 260 VILYAGLGKKDKIDQIWKSLRMTNQKMTSRNFVCILSSYLMLGHLKEVGEIVDQWKQSTT 319
Query: 215 LPYDFGLPSSLIDAHCKNGLLEKAQSL 241
+D + L+DA GL E A +
Sbjct: 320 TDFDISACNRLLDAISCLGLTEIANNF 346
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 84/224 (37%), Gaps = 29/224 (12%)
Query: 25 IYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDAL 83
IY I L++ F G A V++EM++ G A T +CY +I+ + ++ +
Sbjct: 457 IYTTLIKTFLQKSRF---GDAVRVLKEMREQGIAPDT-FCYNSLIIGLSKAKKMDEARSF 512
Query: 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII-NMTESN--PQMVLDFNLLAVLLY 140
+LEM E D FT G S Y A + DK + M E P VL
Sbjct: 513 LLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVL---------- 562
Query: 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDV 200
GLI E +R G K Y +M L+K V
Sbjct: 563 --------CTGLINEYCKKGKVIEACSA-FRSMVEQGILGDA--KTYTVLMNGLVKNGKV 611
Query: 201 KGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
AE+ K + D +LID K G ++KA S+ +
Sbjct: 612 NDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDE 655
>gi|255559466|ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540138|gb|EEF41715.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 115/263 (43%), Gaps = 37/263 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLR---QCLFF--------GVGKAEMVVQEMKDMGFAR 59
L+L+ +V G+ AE +F+++ +R C V KAE ++++M+D F +
Sbjct: 111 LDLVAKVRGLTSAEKFFEDLPDEMRGWQTCTALLHTYVKCKDVVKAEALMEKMRDCSFVK 170
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG----- 114
+ M+ L G +K ++ E++ KS D T + S A+ +D+
Sbjct: 171 NPLPYNHMISLYIADGEFDKAKRIVEELK-KSTTPDVVTFNLWLSMCASLNDVESAKKVL 229
Query: 115 ---MDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNS---SNAFEL--- 165
I + + L LL A++ LK+ E A+++N S+ L
Sbjct: 230 LELKKLKIEADWITYSTLTNLYLKNKLLEDAVSTLKEMEKR-ASRKNRLAYSSLLSLYTN 288
Query: 166 ---KDQLYRIWKHYGQTRKVFNK----GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
KD ++RIW + + +F K Y M+ L+KL++++ AE W S + D
Sbjct: 289 MGDKDAVHRIW---NKMKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTEWESVSGTGD 345
Query: 219 FGLPSSLIDAHCKNGLLEKAQSL 241
+ + L+ A+ +E +++
Sbjct: 346 PQVANILLAAYINRNQIEDSENF 368
>gi|242066836|ref|XP_002454707.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
gi|241934538|gb|EES07683.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
Length = 527
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 29/265 (10%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFF----------GVGKAEMVVQEMKDMGF 57
+RL+LI + +G QAE Y++ + S RQ F V KAE + +++ G
Sbjct: 129 ARLDLIAKAYGTSQAEEYYNKLQSPAARQAASFPLLHCYVTERNVQKAETFMAQLQSCGL 188
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
+M L T EK +++ M+ +I + + + + A S + +
Sbjct: 189 PVDPHSFNEIMKLYIATFQYEKALSVIDLMKRNNIPRNVLSYNLWMNVCAEVSGVAPVQS 248
Query: 118 IINMTESNPQMVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFEL--- 165
+ ++ + + ++ L + A L+K+E ++ +F +
Sbjct: 249 VFQEMLNDETVEVGWSTYCTLANIFRKNGLNTKAQACLRKAETKLSPTGRLGYSFVMTCY 308
Query: 166 -----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
D + R+W+ ++ YMT M +K+ D+ AE +W + +D
Sbjct: 309 AALNDSDGVMRLWEASKSVPGRIPAANYMTAMLCSIKVGDISQAEWIFGSWEAGCRKHDV 368
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ A+ +N +EKA+ L H
Sbjct: 369 RVSNVLLGAYVRNRWIEKAERLHLH 393
>gi|297806979|ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
lyrata]
gi|297317210|gb|EFH47632.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
lyrata]
Length = 410
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 40/263 (15%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNI----------SKLLRQCLFFGVGKAEMV------VQE 51
SR++LI +V G++ AE YF+ + + LL + G + E + E
Sbjct: 128 ASRIDLISKVFGIDAAERYFEGLHIDAKTTETYTSLLHA--YAGSKQTERAEALFKRIIE 185
Query: 52 MKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111
+ F I MM L G EK+ ++ ++ K ++ D FT + S+ AA +
Sbjct: 186 TDSLSFG--AITYNEMMTLYMSVGQVEKVPEVIQVLKHKKVSPDIFTYNLWLSSCAATFN 243
Query: 112 IHGMDKIINM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL-- 165
I + +I+ SN V NL ++ + + +S + +++ S +
Sbjct: 244 IDELRRILEEMRHDASSNEGWVRYINLTSIYINSSRVTNAESTSPVEAEKSISQREWITY 303
Query: 166 ------------KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNW-T 211
K + +IWK G T +K+ ++ Y+ ++ L L ++ AE+ + W
Sbjct: 304 DFLMILHTGLGNKVMIDQIWKSLGNTNQKLSSRSYICVLSSYLMLGHLREAEEIIHQWKE 363
Query: 212 SKNLPYDFGLPSSLIDAHCKNGL 234
SK +D +++A GL
Sbjct: 364 SKTTEFDASACLRILNAFRDVGL 386
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 23/203 (11%)
Query: 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLG 100
V KA+ ++ EM G + ++ Y ++ Y+ +R+ +D ++ ME++ + T
Sbjct: 232 VEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYS 291
Query: 101 IRPSAYAAASDIHGMDKII-NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNS 159
I Y+++ DI +KI M E N +M V +Y +M + G N
Sbjct: 292 ILIQWYSSSGDIEEAEKIFEEMREKNIEM-------DVYVYSSMISWSRRLG------NM 338
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218
AF L D++ Q V N Y ++G + K ++ AE L SK + +
Sbjct: 339 KRAFALFDEM-------SQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLN 391
Query: 219 FGLPSSLIDAHCKNGLLEKAQSL 241
+ ++ +D +C+ G +++A L
Sbjct: 392 LVIFNTTMDGYCRRGKMDEALRL 414
>gi|302788498|ref|XP_002976018.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
gi|300156294|gb|EFJ22923.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
Length = 603
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 4 KLYIPSRLNLIFEVHGVEQAEIYFDNISK-----------LLRQCLFFGVGKAEMVVQEM 52
KL +L + G+ AE F+ +S L R V KAE + +EM
Sbjct: 217 KLARSFQLEITARSKGIAAAEKLFEELSAEEKTRPVYNALLTRYVFLHNVKKAEGLFEEM 276
Query: 53 KDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111
GF ++ + +MM L G+ K ++ + ++ ++ + FT + A A D
Sbjct: 277 DKAGFLSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYNVMLDLKAKAGD 336
Query: 112 IHGMDKIINMTESNPQMVLD 131
+ GM+KI + NP D
Sbjct: 337 VEGMEKIFEEMKLNPNAKPD 356
>gi|357439923|ref|XP_003590239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479287|gb|AES60490.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 2 TDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQ 50
T+K Y S+L+LI ++ G+ +AE Y +++ R L + + K E
Sbjct: 206 TEKEYA-SKLDLIAKLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFN 264
Query: 51 EMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS 110
+M+++GF C ++++ ++ D L++ ME++++ +T I ++
Sbjct: 265 KMRELGFPVTAFACNQLLLIYKKIDKKKIADVLLM-MEKENVKPSSYTYKILIDVKGLSN 323
Query: 111 DIHGMDKIINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLI 153
DI GM +I+ ++ LD A L Y A + +K+E ++
Sbjct: 324 DIDGMSQIVETMKAE-GCELDHLTRASLARHYAAAGLTEKTEAIL 367
>gi|413950397|gb|AFW83046.1| hypothetical protein ZEAMMB73_939845 [Zea mays]
Length = 453
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/255 (18%), Positives = 104/255 (40%), Gaps = 44/255 (17%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIM 67
+RL+LI + + QAE Y++ + S RQ F + ++CY+M
Sbjct: 149 ARLDLIAKAYSTSQAEEYYNKLQSPATRQAASFPL-------------------LHCYVM 189
Query: 68 MILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQ 127
+ EK+ +++ M+ +I+ + + + +A A S + + + + ++
Sbjct: 190 ------ERDHEKVLSVIDLMKRNNIHRNVLSYNLWMNACAEVSGVDSVQSVFQVMLNDET 243
Query: 128 MVLDFNLLAVLLYM---------AMTMLKKSEGLIATKRNSSNAFEL--------KDQLY 170
+ + ++ L + A L K+E ++ +F + D +
Sbjct: 244 VKVGWSTYCTLANIFRKNGLNTEAQACLVKAEAKLSPTGRLGYSFVMTCYAALNDSDGVM 303
Query: 171 RIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH 229
R+W+ ++ YM M +K+ D+ AE W + +D + + L+ A+
Sbjct: 304 RMWEASKSVPGRILTAYYMAAMSCSIKVGDISQAECIFGKWEAGCRKHDVRVSNVLLGAY 363
Query: 230 CKNGLLEKAQSLINH 244
+N +EKA+ L H
Sbjct: 364 VRNRWIEKAERLHLH 378
>gi|357439973|ref|XP_003590264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479312|gb|AES60515.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 557
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 2 TDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQ 50
T+K Y S+L+LI ++ G+ +AE Y +++ R L + + K E
Sbjct: 157 TEKEY-ASKLDLIAKLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFN 215
Query: 51 EMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS 110
+M+++GF C ++++ ++ D L++ ME++++ +T I ++
Sbjct: 216 KMRELGFPVTAFACNQLLLIYKKIDKKKIADVLLM-MEKENVKPSSYTYKILIDVKGLSN 274
Query: 111 DIHGMDKII 119
DI GM +I+
Sbjct: 275 DIDGMSQIV 283
>gi|302764000|ref|XP_002965421.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
gi|300166235|gb|EFJ32841.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
Length = 584
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 19 GVEQAEIYFDNISK-----------LLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCY-I 66
G+ AE F+ +S L R V KAE + +EM GF ++ + +
Sbjct: 213 GIAAAEKLFEELSAEEKTRPVYNALLTRYVFLHNVKKAEGLFEEMDKAGFLSQSPFALNL 272
Query: 67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNP 126
MM L G+ K ++ + ++ ++ + FT + A A D+ GM+KI + NP
Sbjct: 273 MMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYNVMLDLKAKAGDVEGMEKIFEEMKLNP 332
Query: 127 QMVLD 131
D
Sbjct: 333 NAKPD 337
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 42 VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLT-GNREKIDALMLEMEEKSINGDQFT 98
VG E +++D+ + + IYCY +I + G ++ L+ EM+++ I+ D ++
Sbjct: 238 VGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYS 297
Query: 99 LGIRPSAYAAASDIH-GMDKIINMTESN--PQMVLDFNLLAVLLYMAMTMLKKSEGLIAT 155
I +A+ DI GM+ I M N P +V ++L L +++GL+
Sbjct: 298 YSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGL---------RTKGLVND 348
Query: 156 KRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
N + K +KH + Y T++ LK +VK A + L
Sbjct: 349 CLNFFHELSAKG-----YKHDLIS-------YSTLIHGFLKGHNVKSANNLVHEMRKNGL 396
Query: 216 PYDFGLPSSLIDAHCKNGLLEKA 238
D+ + SLI +C+ G L++A
Sbjct: 397 VPDYIIYISLIREYCRKGCLKEA 419
>gi|297816278|ref|XP_002876022.1| hypothetical protein ARALYDRAFT_906351 [Arabidopsis lyrata subsp.
lyrata]
gi|297321860|gb|EFH52281.1| hypothetical protein ARALYDRAFT_906351 [Arabidopsis lyrata subsp.
lyrata]
Length = 329
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 32/159 (20%)
Query: 104 SAYAAASDIHGMDKIIN-MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATK------ 156
++Y + D+ GM+K +N + E P+ A+ ML+KSE L+ T
Sbjct: 95 ASYISEFDVTGMEKYLNKLEEKRPKG------------FALAMLRKSEPLLVTNEYYDIL 142
Query: 157 ---------RNSSNAFELKDQLYRIWKHYGQTR--KVFNKGYMTMMGLLLKLDDVKGAEK 205
R F K+ L R+W + K N+ T++ LK DD++GA +
Sbjct: 143 GPIRVFGALRILYRRFGEKEDLRRLWNLARDMKAFKFINEYICTILAFWLK-DDIEGAHQ 201
Query: 206 TLRNW-TSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
L W T ++ ++ + L + C+ +++ + ++N
Sbjct: 202 VLEEWDTGEHRYFEVKIKDILDFSQCRKLVIQGTELMVN 240
>gi|297851236|ref|XP_002893499.1| hypothetical protein ARALYDRAFT_335936 [Arabidopsis lyrata subsp.
lyrata]
gi|297339341|gb|EFH69758.1| hypothetical protein ARALYDRAFT_335936 [Arabidopsis lyrata subsp.
lyrata]
Length = 198
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNI-------SKLLRQCLFF------GVGKAEMVVQEMKDM 55
+RL+LI V G+E+AE +F+ I S L L F + KAE++ +M+ +
Sbjct: 11 ARLHLIDNVLGLEEAEKFFETIPQDKRDDSDLYTTILSFYTRSAKTLEKAELIFHKMRKL 70
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
G+ + MM L G R+ + ++ +ME+ + D TL I
Sbjct: 71 GYLSKPCPFNHMMSLYNQIGKRDMVHQILSQMEKNNAKSDNRTLNI 116
>gi|296090465|emb|CBI40661.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
R++L+ V G++ AE YF+ + + + KAE + + +K+
Sbjct: 125 RIDLMTRVFGIDAAERYFEGLPSAAKTSETYTALLHSYAGAKLAEKAEELYERIKESNVP 184
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ MM L G EK+ ++ E++ + + D FT + S+ AA DI G+ +I
Sbjct: 185 LNILLYNEMMTLYMSVGQVEKVSLVVEELKRQKVVPDLFTYNLWVSSCAATLDIDGVRRI 244
Query: 119 INMTESN 125
+ +N
Sbjct: 245 LKEMSNN 251
>gi|390362882|ref|XP_003730248.1| PREDICTED: leucine-rich PPR motif-containing protein,
mitochondrial-like [Strongylocentrotus purpuratus]
Length = 572
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
D++GA K L SK+LP G+ +SLI H + G LE AQ+++N
Sbjct: 196 DIQGATKILEFMKSKDLPVTEGIFNSLITGHGRAGDLENAQNILN 240
>gi|390366015|ref|XP_791375.3| PREDICTED: leucine-rich PPR motif-containing protein,
mitochondrial-like [Strongylocentrotus purpuratus]
Length = 1106
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
D++GA K L SK+LP G+ +SLI H + G LE AQ+++N
Sbjct: 218 DIQGATKILEFMKSKDLPVTEGIFNSLITGHGRAGDLENAQNILN 262
>gi|255562320|ref|XP_002522167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538605|gb|EEF40208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 342
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 52 MKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111
MKD+ F T C +++L Y +++KI ++L ME+++I FT + ++D
Sbjct: 1 MKDLEFPVTTFACNQLLLL-YKRLDKKKIADVLLLMEKENIKPSLFTYKLLIDTKGQSND 59
Query: 112 IHGMDKIINMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLI 153
+ GMD+I+ +++ + D N+ A+L Y + + +K+E ++
Sbjct: 60 LTGMDQIVETMKAD-GIEPDINIRAILAKHYASGGLKEKAEAIL 102
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 176 YGQTRKVFNK-----------GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS 224
Y RKVF + Y T++ + K + A R + L D L S+
Sbjct: 339 YDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSA 398
Query: 225 LIDAHCKNGLLEKAQSLINHAETKKG 250
LIDA CKNGL+E A SL++ TK+G
Sbjct: 399 LIDALCKNGLVESAVSLLDEM-TKEG 423
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 168 QLYRIWKHYG--QTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSL 225
+++ H+G QT +V+N ++ L + GA K LR K + D S+L
Sbjct: 168 EVFNRLPHFGCPQTTEVYN----ALLDALCANGNFAGAYKLLRRMARKGVAPDRATFSTL 223
Query: 226 IDAHCKNGLLEKAQSLINHAETK 248
+DA C +G L +AQ+ ++ T+
Sbjct: 224 VDAWCASGKLREAQAFLDDMATR 246
>gi|356534606|ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Glycine max]
Length = 600
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGF 57
S+L+LI ++ G+ QAE Y +++ + R L + + +E + +MKD+
Sbjct: 206 SQLDLIAKLRGLPQAEKYIESVPESFRGELLYRTLLANCASQNNLIASEKIFNKMKDLDL 265
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L ++ D L+L ME++++ FT I + ++DI GM++
Sbjct: 266 PLTVFACNQLLLLYKKLDKKKIADVLLL-MEKENVKPSLFTYRILIDSKGHSNDIAGMEQ 324
Query: 118 II-NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI 153
+ M E + + L Y + + +K+E ++
Sbjct: 325 VFETMKEEGFEPDIQLQALLARHYTSAGLKEKAEAIL 361
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 176 YGQTRKVFNK-----------GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS 224
Y + R+VF + Y T++ + K K A + R + L D L S+
Sbjct: 452 YDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSA 511
Query: 225 LIDAHCKNGLLEKAQSLINHAETKKG 250
LIDA CKNGL+E + +L++ TK+G
Sbjct: 512 LIDALCKNGLVESSVTLLDEM-TKEG 536
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
S E +L+R H G Y T++ L D A+K + S +P D
Sbjct: 375 SKRVEDGTELFREMSHRGLVGDTVT--YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 432
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAE 246
S L+D C NG LEKA + ++ +
Sbjct: 433 MTYSILLDGLCNNGKLEKALEVFDYMQ 459
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
S E +L+R H G Y T++ L D A+K + S +P D
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVT--YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAE 246
S L+D C NG LEKA + ++ +
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQ 497
>gi|427414471|ref|ZP_18904661.1| hypothetical protein HMPREF9282_02068 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714431|gb|EKU77436.1| hypothetical protein HMPREF9282_02068 [Veillonella ratti
ACS-216-V-Col6b]
Length = 508
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241
GA TL+ W LPYD G+ +L D H G L++AQ L
Sbjct: 46 GAPHTLKLWMEPALPYDLGVMYALDDLHEPEGSLKEAQDL 85
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 168 QLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLID 227
+L+R H G Y T++ L D A+K + S +P D S L+D
Sbjct: 346 ELFREMSHRGLVGDTVT--YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 403
Query: 228 AHCKNGLLEKAQSLINHAE 246
C NG LEKA + ++ +
Sbjct: 404 GLCNNGKLEKALEVFDYMQ 422
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
S E +L+R H G Y T++ L D A+K + S +P D
Sbjct: 337 SKRVEDGTELFREMSHRGLVGDTVT--YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 394
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAE 246
S L+D C NG LEKA + ++ +
Sbjct: 395 MTYSILLDGLCNNGKLEKALEVFDYMQ 421
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 22/200 (11%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLGIR 102
+AE + +EMKD G +T Y ++ Y+ G + + ++ EME ++ D+ T +
Sbjct: 309 EAEAIFEEMKDNGLKPKT-RAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLL 367
Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLL-YMAMTMLKKSEGLIATKRNSSN 161
AY+ A ++ E+N M + +L Y +KS ++
Sbjct: 368 IDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLK------- 420
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
E+K+ R +H+ Y M+ K + A T S+ + D
Sbjct: 421 --EMKNSGVRPDRHF----------YNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVT 468
Query: 222 PSSLIDAHCKNGLLEKAQSL 241
++LID HCK L E+A+ L
Sbjct: 469 WNTLIDCHCKAELHERAEEL 488
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 156 KRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
K N +A++L +L R +G +F Y ++ L K +D+ AE +N S NL
Sbjct: 336 KGNIDSAYDLVVKLGR----FGFLPNLFV--YNALINALCKGEDLDKAELLYKNMHSMNL 389
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQS 240
P + S LID+ CK G+L+ A+S
Sbjct: 390 PLNDVTYSILIDSFCKRGMLDVAES 414
>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Cucumis sativus]
Length = 636
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
Y ++M L +L V+ A + + + D L ++LI A+CK+G+L++A+SL++
Sbjct: 332 SYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLH 389
>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Cucumis sativus]
Length = 632
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
Y ++M L +L V+ A + + + D L ++LI A+CK+G+L++A+SL++
Sbjct: 328 SYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLH 385
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
Y T++ L K D+ A + L T++ D SSLID CK G +E+A L++
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 241
>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 487
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245
Y T++G+L+K ++ A + +R + +D ++LI+ +CK G LE A L++
Sbjct: 284 AYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEI 343
Query: 246 E 246
E
Sbjct: 344 E 344
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLGIR 102
+AE + +E+K+ G RT Y ++ Y+ TG+ + ++++ EME + D+ T +
Sbjct: 380 EAEAIFEELKEGGLMPRT-RAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLL 438
Query: 103 PSAYAAASDIHGMDKIINMTESN---PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNS 159
AYA A ++ E++ P + +LA Y +KS ++ RNS
Sbjct: 439 IDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILAS--YRDRGKWQKSFQVLREMRNS 496
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
+ + +H+ Y M+ K + + A T + + D
Sbjct: 497 GVSPD---------RHF----------YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 537
Query: 220 GLPSSLIDAHCKNGLLEKAQSLI 242
++LID HCK+G KA+ L
Sbjct: 538 VTWNTLIDCHCKSGHHNKAEELF 560
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 80 IDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138
IDAL E + K I +G+ P+ Y+ I+G+ K + E+ NLL +
Sbjct: 227 IDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA-------MNLLREM 279
Query: 139 LYMAM---TMLKKS--EGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGL 193
L+ M T+ S +GL + R +S A L ++++ H GQ V Y +++
Sbjct: 280 LHKNMVPDTVTYNSLIDGLCKSGRITS-ALNLMNEMH----HRGQPADVVT--YTSLLDA 332
Query: 194 LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
L K ++ A + + ++LID CK G L+ AQ L H K
Sbjct: 333 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK 387
>gi|21592522|gb|AAM64472.1| unknown [Arabidopsis thaliana]
Length = 409
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 40/263 (15%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNI-----------SKLLRQCLFFGVGKAEMVVQ---EMK 53
SR++LI +V G++ AE YF+ + S L +AE + + E
Sbjct: 127 ASRIDLISKVFGIDAAERYFEGLHIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESD 186
Query: 54 DMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH 113
+ F I MM L G EK+ ++ +++K ++ D FT + S+ AA +I
Sbjct: 187 SLTFG--AITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNID 244
Query: 114 GMDKIINM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI---ATKRNSSNAFELK 166
+ KI+ SN V +L ++ Y+ + + +E + A K S +
Sbjct: 245 ELRKILEEMRHDASSNEGWVRYIDLTSI--YINSSRVTNAESTLPVEAEKSISQREWITY 302
Query: 167 DQLY-------------RIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNW-T 211
D L +IWK T ++ ++ Y+ ++ L L ++ AE+ + W
Sbjct: 303 DFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKE 362
Query: 212 SKNLPYDFGLPSSLIDAHCKNGL 234
SK +D +++A GL
Sbjct: 363 SKTTEFDASACLRILNAFRDVGL 385
>gi|18415979|ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75165070|sp|Q94B59.1|PP372_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g09450, mitochondrial; Flags: Precursor
gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis thaliana]
gi|27311913|gb|AAO00922.1| putative protein [Arabidopsis thaliana]
gi|332004012|gb|AED91395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 409
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 40/263 (15%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNI-----------SKLLRQCLFFGVGKAEMVVQ---EMK 53
SR++LI +V G++ AE YF+ + S L +AE + + E
Sbjct: 127 ASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESD 186
Query: 54 DMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH 113
+ F I MM L G EK+ ++ +++K ++ D FT + S+ AA +I
Sbjct: 187 SLTFG--AITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNID 244
Query: 114 GMDKIINM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI---ATKRNSSNAFELK 166
+ KI+ SN V +L ++ Y+ + + +E + A K S +
Sbjct: 245 ELRKILEEMRHDASSNEGWVRYIDLTSI--YINSSRVTNAESTLPVEAEKSISQREWITY 302
Query: 167 DQLY-------------RIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNW-T 211
D L +IWK T ++ ++ Y+ ++ L L ++ AE+ + W
Sbjct: 303 DFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKE 362
Query: 212 SKNLPYDFGLPSSLIDAHCKNGL 234
SK +D +++A GL
Sbjct: 363 SKTTEFDASACLRILNAFRDVGL 385
>gi|357137419|ref|XP_003570298.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Brachypodium distachyon]
Length = 513
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 29/265 (10%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFF----------GVGKAEMVVQEMKDMGF 57
+RL+LI +VHG AE Y+ + + R+ F V KAE + ++ +G
Sbjct: 115 ARLDLIAKVHGTCHAEEYYKKLRNAACREAASFPLLHCYVAERNVQKAESFMASLQSIGL 174
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI--NGDQFTLGIRPSAYAAASDIHGM 115
M+ L T EK A++ M+ +I N + L + + + + +
Sbjct: 175 PVDPHSFNEMLKLYVATCQFEKALAVIDLMKRSNIPRNVLSYNLWMNACSVLGVASVQSV 234
Query: 116 ------DKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
D + + S + + + L A+ L+ +E ++ ++ +F +
Sbjct: 235 FKEMVNDGTVEVGWSTFCTLANIFIKHGLNSKALACLRTAETKLSPRQRLGYSFVMTCYA 294
Query: 166 ----KDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDF 219
D + R+W+ ++ + YM+ + +K+ D+ AE +W ++ D
Sbjct: 295 RLDDSDGVMRLWEASKSVPGRIPSANYMSTIICSIKVGDIAQAEWIFGSWEAECGRKNDV 354
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINH 244
+ + L+ A+ +NG +EKA+ L H
Sbjct: 355 RVSNVLLGAYVRNGWIEKAERLHLH 379
>gi|115471209|ref|NP_001059203.1| Os07g0222700 [Oryza sativa Japonica Group]
gi|34394024|dbj|BAC84055.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113610739|dbj|BAF21117.1| Os07g0222700 [Oryza sativa Japonica Group]
gi|117380751|gb|ABK34463.1| DNA-binding protein [Oryza sativa Japonica Group]
Length = 411
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 101/229 (44%), Gaps = 23/229 (10%)
Query: 33 LLRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS 91
L+ C+ G + KAE V +E+KD+ R T+ MIL Y K+ ++++ ME+++
Sbjct: 52 LIVNCVLAGDIQKAEEVFKEIKDLCL-RLTVTLCNQMILLYKRIAPGKVASVLMLMEKEN 110
Query: 92 INGDQFTLGIRPSAYAAASDIHGMDKIIN--------MTESNPQMVLDFNLLAVLLYMAM 143
+ FT + ++D+ G++ ++N + S MV F + L A
Sbjct: 111 VKPSAFTYRLLIDLKGRSNDLAGIEVVLNEMKAYGIEPSTSTQTMVARFYIHGGLTEKAE 170
Query: 144 TMLKKSEGLIATKRNSSNAFELKDQLY----------RIWKHYGQTRKVFNKGYMTMMGL 193
++K+ E ++ ++ + + LY RIW+ + + +++ +
Sbjct: 171 AVVKEMEAQLSNSKDGRHVIKSLLHLYAALNKPNDVARIWEMCTEP---MLEDFLSAIKA 227
Query: 194 LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
+L ++ AE+T + +++++ + +N LL K + +
Sbjct: 228 WGELGLIEKAEETFEAMANAPEKLSSKYYNAMLNVYAQNKLLSKGKQFV 276
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-TGNREKIDALMLEMEEKSINGDQFTLGIR 102
+AE + +E+K+ G RT Y ++ Y+ TG+ + ++++ EME + D+ T +
Sbjct: 309 EAEAIFEELKEGGLMPRT-RAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLL 367
Query: 103 PSAYAAASDIHGMDKIINMTESN---PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNS 159
AYA A ++ E++ P + +LA Y +KS ++ RNS
Sbjct: 368 IDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILAS--YRDRGKWQKSFQVLREMRNS 425
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
+ + +H+ Y M+ K + + A T + + D
Sbjct: 426 GVSPD---------RHF----------YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 466
Query: 220 GLPSSLIDAHCKNGLLEKAQSLI 242
++LID HCK+G KA+ L
Sbjct: 467 VTWNTLIDCHCKSGHHNKAEELF 489
>gi|9955532|emb|CAC05471.1| putative protein [Arabidopsis thaliana]
Length = 402
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 36/261 (13%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNI---SKLLRQCLFFGVGKAEMVVQEMKDMGFAR----- 59
SR++LI +V G++ AE YF+ + SK A E + F R
Sbjct: 120 ASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESD 179
Query: 60 ----RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
I MM L G EK+ ++ +++K ++ D FT + S+ AA +I +
Sbjct: 180 SLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDEL 239
Query: 116 DKIINM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI---ATKRNSSNAFELKDQ 168
KI+ SN V +L ++ Y+ + + +E + A K S + D
Sbjct: 240 RKILEEMRHDASSNEGWVRYIDLTSI--YINSSRVTNAESTLPVEAEKSISQREWITYDF 297
Query: 169 LY-------------RIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNW-TSK 213
L +IWK T ++ ++ Y+ ++ L L ++ AE+ + W SK
Sbjct: 298 LMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESK 357
Query: 214 NLPYDFGLPSSLIDAHCKNGL 234
+D +++A GL
Sbjct: 358 TTEFDASACLRILNAFRDVGL 378
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 176 YGQTRKVFNK-----------GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS 224
Y + +KVF + Y T++ K K A + R + S L D L S+
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554
Query: 225 LIDAHCKNGLLEKAQSLINHAETKKG 250
LIDA CKNGL+ A SLI+ TK+G
Sbjct: 555 LIDALCKNGLVGSAVSLIDEM-TKEG 579
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 201 KGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
K A + R + S L D L S+LIDA CKNGL+ A SLI+ TK+G
Sbjct: 531 KEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM-TKEG 579
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,623,515,763
Number of Sequences: 23463169
Number of extensions: 140313098
Number of successful extensions: 312750
Number of sequences better than 100.0: 362
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 311795
Number of HSP's gapped (non-prelim): 626
length of query: 250
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 111
effective length of database: 9,097,814,876
effective search space: 1009857451236
effective search space used: 1009857451236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)