BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037164
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 147/268 (54%), Gaps = 33/268 (12%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
+ RL+LI +V G+ +AE +F+ I R +G + KAE V QEMK++
Sbjct: 109 VAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKEL 168
Query: 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
GF + + +M+ L TG ++ L+ EME++++ D FT+ R AY+ SD+ GM
Sbjct: 169 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 228
Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFEL 165
+K + E++ + LD+ + A L A+ ML+KSE ++ A KR +A+E+
Sbjct: 229 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK--HAYEV 286
Query: 166 ----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
K+++YR+W Y + +N GY++++ LLK+DD++ EK + W + +
Sbjct: 287 LMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHS 346
Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
+D +P LI +CK G++EKA+ ++N
Sbjct: 347 LFDIRIPHLLITGYCKKGMMEKAEEVVN 374
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 31/271 (11%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
+RL+LI V G+E+AE +F++I K R + + KAE Q+M+D+G
Sbjct: 109 ARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLG 168
Query: 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
R + MM L NREK++ L+LEM++ + D T+ Y+A D+ M+
Sbjct: 169 LLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEME 228
Query: 117 KIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL-- 165
K +N E + L+++ L A AM ML+ +E L+ K S L
Sbjct: 229 KFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMK 288
Query: 166 -------KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
++++ R+WK Y + + N GY T++ LLK+DD+ GAE+ + W S L +
Sbjct: 289 LYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEF 348
Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
D +P+ L + G+ EKA+ L+N K
Sbjct: 349 DHRIPTMLASGYRDRGMTEKAEKLMNSKTIK 379
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 28/111 (25%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMM 68
+RL L V G+E+AE YF+NI + MKD Y+ +
Sbjct: 441 ARLYLTENVLGLEEAEKYFENIP------------------ENMKDYS-------VYVAL 475
Query: 69 ILNYLTGNRE---KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
+ +Y ++ +D ++ EMEE +++ D T+ YAA S I M+
Sbjct: 476 LSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQAME 526
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 29/264 (10%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
+L+LI +V G+ AE +F + + + +G KAE ++ M+D G+A
Sbjct: 142 QLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYA 201
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
+ +MM L +K+DA++ EM++K I D ++ I S+ + + M+ +
Sbjct: 202 LHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELV 261
Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
+S+ + ++ + + M + M L+K E I + + L
Sbjct: 262 YQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYG 321
Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
K +LYR+W Y + N GY ++ L+++ D++GAEK W YD
Sbjct: 322 SLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPR 381
Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
+P+ L++A+ KN LE A+ L +H
Sbjct: 382 IPNLLMNAYVKNDQLETAEGLFDH 405
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 37/272 (13%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
RLNLI + G+E AE YF+++ ++ +G KA+ + M D+
Sbjct: 113 RLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHV 172
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ +M + G EK+ AL++ M+EKSI T + + + D+ G++K+
Sbjct: 173 SNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKV 232
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKD--------- 167
++ ++ + + +N A L +Y+ + + K+E + + N+ N +++D
Sbjct: 233 LDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP-DVRDCYHFLINLY 291
Query: 168 -------QLYRIW----KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++YR+W K Y V N Y+TM+ L KLDD+ G +K W S
Sbjct: 292 TGIANASEVYRVWDLLKKRYPN---VNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWT 348
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
YD + + I ++ K + E+A+++ N A K
Sbjct: 349 YDMRMANVAISSYLKQNMYEEAEAVFNGAMKK 380
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 39/274 (14%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+L+ + + E YF ++ + + L +G KAE ++ +MK++
Sbjct: 97 LDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITP 156
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L TG EK+ A++ E++ +++ D +T + A AA +DI G++++I
Sbjct: 157 SSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVI 216
Query: 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKD------------ 167
+ ++ D+ Y M + GL + E+K+
Sbjct: 217 EEMNRDGRVAPDWTT-----YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLI 271
Query: 168 ----------QLYRIWKHYG-QTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
++YRIW+ K N Y+ M+ +L+KL+D+ GAE + W +
Sbjct: 272 TLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCST 331
Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
YD + + LI A+ + GL++KA L A + G
Sbjct: 332 YDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGG 365
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 125/261 (47%), Gaps = 29/261 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
L+LI V+G AE YF+N+ + + +G V K+ + ++MK+MGF
Sbjct: 100 LDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVT 159
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
++ +M L G EK+ ++ EM+E+++ D ++ I +A+ A D+ + +
Sbjct: 160 SSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTL 219
Query: 120 NMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFEL----- 165
E + +D+N AV Y+ A+ +LK SE + K +
Sbjct: 220 RDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYAR 279
Query: 166 ---KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
K ++ R+W ++ N+ Y+T++ L+K+D + AE+ L W S YDF +
Sbjct: 280 LGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRV 339
Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
P+++I + + EKA++++
Sbjct: 340 PNTVIRGYIGKSMEEKAEAML 360
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 30/265 (11%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLRQ------------CLFFGVGKAEMVVQEMKDMGFA 58
L+LI + G+E AE YF+N+ + C+ KA+ + M ++ F
Sbjct: 145 LDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFV 204
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
++ MM + EK+ L+ M+++ I+ T I + + +D+ G++KI
Sbjct: 205 NNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKI 264
Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT---KRNSSN------------ 161
I+ + + +N + L +Y + +K++ + + K N +N
Sbjct: 265 IDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYA 324
Query: 162 AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
++YR+W+ + R +V N Y+ M+ + KL D+ G +K W SK YD
Sbjct: 325 GISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMR 384
Query: 221 LPSSLIDAHCKNGLLEKAQSLINHA 245
L + I+ + K + E+A+ +++ A
Sbjct: 385 LANIAINTYLKGNMYEEAEKILDGA 409
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 33/272 (12%)
Query: 1 MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVV 49
MT++ Y SRL+L ++ G+E+ E I K LL C+ G V K+E+V
Sbjct: 194 MTERDY-ASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVF 252
Query: 50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
+MKD+GF C M++L+ +R+KI ++L ME+++I T I A
Sbjct: 253 NKMKDLGFPLSGFTCDQMLLLHKRI-DRKKIADVLLLMEKENIKPSLLTYKILIDVKGAT 311
Query: 110 SDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG--LIATKRN 158
+DI GM++I+ T + + LDF A+ L A +LK+ EG L A +R
Sbjct: 312 NDISGMEQILE-TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRA 370
Query: 159 SSNAFEL------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212
+ + +D++ RIWK +++ F + + KL+ V+ AE
Sbjct: 371 FKDLLSIYASLGREDEVKRIWK-ICESKPYFEESLAAIQA-FGKLNKVQEAEAIFEKIVK 428
Query: 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
+ S L+ + + +L K + L+
Sbjct: 429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKR 460
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 9 SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVVQEMKDMGF 57
S+L+L+ +VH +++AEI+ +I + LL C+ V KAE + +MK++ F
Sbjct: 214 SQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKF 273
Query: 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
C +++L Y +R+KI ++L ME ++I + T ++ A DI GM+K
Sbjct: 274 PTSVFACNQLLLL-YSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEK 332
Query: 118 IINM-----TESNPQM---VLDFNLLAVLLYMAMTMLKKSEG 151
I+ E +P++ + + + A L A ++K+ EG
Sbjct: 333 IVETIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEG 374
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 41/272 (15%)
Query: 7 IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGK------------------AEMV 48
I RL+LI + HG++Q E YF+ KLL + V K AE +
Sbjct: 109 IALRLDLIIKTHGLKQGEEYFE---KLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEAL 165
Query: 49 VQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA 108
++++ +GF MM L +G EK+ ++ M+ I + + + +A
Sbjct: 166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225
Query: 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNS 159
S + ++ + + + + ++ L L +Y+ A +L+ +E ++ + N
Sbjct: 226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKML-NRSNR 284
Query: 160 SNAFEL---------KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
F L K+ + R+W+ ++ Y+ ++ L+K D++ AE+
Sbjct: 285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344
Query: 210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241
W ++ YD + + L+ A+ +NG + KA+SL
Sbjct: 345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESL 376
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 38/226 (16%)
Query: 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GVGKAEMVVQEMKDMGFA 58
RL+LI +V G + E Y I + R L + V AE V +MKD+GF
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259
Query: 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
T C M+IL Y +++KI ++L +E++++ + T I +++DI GM++I
Sbjct: 260 LSTFTCNQMLIL-YKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQI 318
Query: 119 INMTESNPQMVLDFNLLAVLL--YMAMTMLKKSEGLIATKRNSS---------------N 161
+ +S + LD A++ Y + + +K+E ++ S
Sbjct: 319 VETMKSEG-VELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 377
Query: 162 AFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLL---KLDDVKGAE 204
+ +D++ R+WK + N Y ++ +L K+D VK AE
Sbjct: 378 YLQREDEVRRVWKICEE-----NPRYNEVLAAILAFGKIDKVKDAE 418
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 91/231 (39%), Gaps = 43/231 (18%)
Query: 25 IYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDAL 83
IY I L+ F G A V++EMK+ G A I+CY +I+ R ++ +
Sbjct: 454 IYTTLIKTFLQNSRF---GDAMRVLKEMKEQGIAP-DIFCYNSLIIGLSKAKRMDEARSF 509
Query: 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII-NMTESN--PQMVLDFNLLAVLLY 140
++EM E + + FT G S Y AS+ DK + M E P VL
Sbjct: 510 LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL---------- 559
Query: 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKG-------YMTMMGL 193
GLI N + K ++ Y R + ++G Y +M
Sbjct: 560 --------CTGLI-------NEYCKKGKVIEACSAY---RSMVDQGILGDAKTYTVLMNG 601
Query: 194 LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
L K D V AE+ R K + D LI+ K G ++KA S+ +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 11 LNLIFEVHGVEQAEIYFDNISKLLR---QCLFFG--------VGKAEMVVQEMKDMGFAR 59
L+LI ++ G+ AE +F+++ +R C KAE + ++M + GF +
Sbjct: 136 LDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLK 195
Query: 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI- 118
+ M+ + G EK+ L+ E++ ++ + D T + +A+A+ +D+ G +K+
Sbjct: 196 SCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVY 254
Query: 119 INMTES--NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFEL----- 165
+ E NP V +++L L + A LK+ E L++ K + A +
Sbjct: 255 LKAKEEKLNPDWV-TYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHAN 313
Query: 166 ---KDQLYRIWKHYGQTRKVFNKG-YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
KD + WK + K N Y++M+ ++KL + + A+ W S + D +
Sbjct: 314 LGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARI 373
Query: 222 PS 223
P+
Sbjct: 374 PN 375
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 160 SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
S E +L+R H G Y T++ L D A+K + S +P D
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVT--YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470
Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHAE 246
S L+D C NG LEKA + ++ +
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQ 497
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 168 QLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLID 227
+L+R H G Y T++ L D A+K + S +P D S L+D
Sbjct: 346 ELFREMSHRGLVGDTVT--YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 403
Query: 228 AHCKNGLLEKAQSLINHAE 246
C NG LEKA + ++ +
Sbjct: 404 GLCNNGKLEKALEVFDYMQ 422
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 40/263 (15%)
Query: 8 PSRLNLIFEVHGVEQAEIYFDNI-----------SKLLRQCLFFGVGKAEMVVQ---EMK 53
SR++LI +V G++ AE YF+ + S L +AE + + E
Sbjct: 127 ASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESD 186
Query: 54 DMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH 113
+ F I MM L G EK+ ++ +++K ++ D FT + S+ AA +I
Sbjct: 187 SLTFG--AITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNID 244
Query: 114 GMDKIINM----TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI---ATKRNSSNAFELK 166
+ KI+ SN V +L ++ Y+ + + +E + A K S +
Sbjct: 245 ELRKILEEMRHDASSNEGWVRYIDLTSI--YINSSRVTNAESTLPVEAEKSISQREWITY 302
Query: 167 DQLY-------------RIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNW-T 211
D L +IWK T ++ ++ Y+ ++ L L ++ AE+ + W
Sbjct: 303 DFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKE 362
Query: 212 SKNLPYDFGLPSSLIDAHCKNGL 234
SK +D +++A GL
Sbjct: 363 SKTTEFDASACLRILNAFRDVGL 385
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 176 YGQTRKVFNK-----------GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS 224
Y + +KVF + Y T++ K K A + R + S L D L S+
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554
Query: 225 LIDAHCKNGLLEKAQSLINHAETKKG 250
LIDA CKNGL+ A SLI+ TK+G
Sbjct: 555 LIDALCKNGLVGSAVSLIDEM-TKEG 579
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 163 FELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP 222
LK Y + + Y R FN +++ + KL VK AE + + D
Sbjct: 39 LSLKFLAYLVSRGYTPHRSSFN----SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISY 94
Query: 223 SSLIDAHCKNGLLEKAQSLINHAETKKG 250
+SLID HC+NG + A ++ G
Sbjct: 95 NSLIDGHCRNGDIRSASLVLESLRASHG 122
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQFTLGIRP 103
AE V +EMK +G A T+ +++++ Y + K +A++ EM E + D F L
Sbjct: 388 AEAVFEEMKRLGIAP-TMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 446
Query: 104 SAYAAASDIHGMDKIINMTESNP 126
+ Y M+KI+ E+ P
Sbjct: 447 NLYGRLGQFTKMEKILAEMENGP 469
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
Y T++ L + D A+K + S +P D S L+D CK G LEKA + + +
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 247 TKK 249
K
Sbjct: 493 KSK 495
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
Y +++ + + D A LR +N+ D S++ID+ C++G ++ A SL E
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 255
Query: 247 TK 248
TK
Sbjct: 256 TK 257
>sp|Q09287|YQK3_CAEEL Uncharacterized protein C56G2.3 OS=Caenorhabditis elegans
GN=C56G2.3 PE=4 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 124 SNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQ 178
SN + VLD L A ++ + +TM +K E L A +R + A+ L Y WK Q
Sbjct: 194 SNARDVLDGPLTADVIGICVTMGRKREALSAARRANIRAYRLPIHRYVKWKSGPQ 248
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249
+ DV+G + LR + + + + +SLI +CK GL+E+A+ + + KK
Sbjct: 274 IGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKK 326
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 169 LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDA 228
L+ +WK G +F Y +++ L K +++ A K + + + L D ++L+DA
Sbjct: 479 LHEMWK-IGLQPNIFT--YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDA 535
Query: 229 HCKNGLLEKAQSLI 242
+CK+G ++KAQ ++
Sbjct: 536 YCKSGEMDKAQEIL 549
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
Y T++ LK+ D+ GA + +R K + + ++++DA CK L++A +L+N A
Sbjct: 419 YHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAH 478
Query: 247 TKKG 250
K+G
Sbjct: 479 -KRG 481
>sp|Q02773|RPM2_YEAST Ribonuclease P protein component, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPM2 PE=1
SV=1
Length = 1202
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 64 CYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD-KIINMT 122
CY MI N L E + ++L + + SI QF P+ SD + + ++ N T
Sbjct: 252 CYQDMINNRLKPPDEIYNIVLLSLFKGSILAYQFE---NPNG----SDFYKIAIELFNTT 304
Query: 123 ESNPQM------------VLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170
++P+ VLD+NLLA+ +Y L K++ +I SS AF +KD Y
Sbjct: 305 TNDPKQKSVVKFRNFSKDVLDYNLLAMNIYPGHITLSKAQQVIK----SSPAF-IKDSFY 359
Query: 171 RI 172
I
Sbjct: 360 FI 361
>sp|Q6PB66|LPPRC_MOUSE Leucine-rich PPR motif-containing protein, mitochondrial OS=Mus
musculus GN=Lrpprc PE=1 SV=2
Length = 1392
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
Y ++ + D++GA K L +K+LP + S+L+ H + G +E A++++
Sbjct: 199 YQRLIAAYCNVGDIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILT 255
>sp|Q60477|CRIS2_CAVPO Cysteine-rich secretory protein 2 OS=Cavia porcellus GN=CRISP2 PE=1
SV=1
Length = 244
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 212 SKNLPYDFGLPSSLIDAHCKNGLLEKA---QSLINHAETKK 249
+KN PY G+P + HC+NGL + + L+++ E+ K
Sbjct: 179 TKNTPYKQGIPCASCPGHCENGLCTNSCEYEDLLSNCESLK 219
>sp|P42704|LPPRC_HUMAN Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo
sapiens GN=LRPPRC PE=1 SV=3
Length = 1394
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
Y ++ + D++GA K L +K+LP + S+L+ H + G +E A++++
Sbjct: 200 YQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENIL 255
>sp|Q5SGE0|LPPRC_RAT Leucine-rich PPR motif-containing protein, mitochondrial OS=Rattus
norvegicus GN=Lrpprc PE=1 SV=1
Length = 1392
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
Y ++ + D++GA K L +++LP + S+L+ H + G +E A++++
Sbjct: 199 YQRLIAAYCSVGDIEGASKILGFMKTRDLPITEAVFSALVTGHARAGDMESAENILT 255
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
Y ++ L + D A++ + S +P + ++L+D CKNG LEKA + + +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Query: 247 TKK 249
K
Sbjct: 494 RSK 496
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 129 VLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKV-FNKGY 187
LDF ++++ + K ++ +I + RN N FE+ D+L I+K Y T+ V N
Sbjct: 1222 ALDFKNVSIVAFYIYEQTKNAQFIIISLRN--NMFEISDRLIGIYKTYNSTKSVAVNPKQ 1279
Query: 188 MTMMGL 193
+ GL
Sbjct: 1280 IASKGL 1285
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 36 QCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNY-LTGNREKIDALMLEMEEKSING 94
+CL + A+ V MK ++ + + M++ Y TG E+ + L+M+ I+
Sbjct: 319 KCLHY----AKTVFDRMK-----QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDP 369
Query: 95 DQFTLGIRPSAYAAASDI 112
D +TLG SA A S +
Sbjct: 370 DHYTLGQAISACANVSSL 387
>sp|A5GCW3|HEM1_GEOUR Glutamyl-tRNA reductase OS=Geobacter uraniireducens (strain Rf4)
GN=hemA PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 189 TMMGLLLKLDDVKGAE--KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
T++ L K D+++ AE KTL NW K LP D + + N LL + S++ AE
Sbjct: 344 TIVALRSKFDEIRRAELAKTLANW--KELPPDAEKRLEALTSAIMNKLLHQPTSVLKRAE 401
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
Y +M L K D++ AEKT + N + ++L+D CK G L A+ +I
Sbjct: 334 YTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQ 391
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246
Y +++ L D++GA LR+ SKN+ D + ++ C+NG +++A
Sbjct: 364 YNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQIS 423
Query: 247 TKK 249
KK
Sbjct: 424 EKK 426
>sp|Q9RQ80|ATPG_BUCDN ATP synthase gamma chain OS=Buchnera aphidicola subsp. Diuraphis
noxia GN=atpG PE=3 SV=1
Length = 290
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 173 WKH-YGQTRKVFNKGYMTM---MGLLLKLDD--VKGAEKTLRNWTSKNLPYD---FGLPS 223
+KH Y +TRK+ G + + GL L+ + ++N+T KN+P D FGL S
Sbjct: 63 YKHSYLETRKIKRIGLIIVSSDRGLCGSLNSNLFRKVLFKIQNFTQKNIPCDLILFGLKS 122
Query: 224 SLIDAHCKNGLLEKAQSLINH 244
+ C+N +L K L H
Sbjct: 123 LPVFKLCENNILSKITHLGEH 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,949,166
Number of Sequences: 539616
Number of extensions: 3415233
Number of successful extensions: 8731
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 8559
Number of HSP's gapped (non-prelim): 169
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)