Query 037164
Match_columns 250
No_of_seqs 184 out of 1463
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 09:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.6E-42 2.1E-46 306.0 23.4 237 9-249 477-749 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.5E-41 9.7E-46 301.7 24.5 246 1-250 498-785 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-38 2.2E-43 281.9 21.2 230 9-248 163-455 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3E-37 6.4E-42 278.3 21.3 230 9-249 328-620 (857)
5 PLN03081 pentatricopeptide (PP 100.0 8.2E-36 1.8E-40 263.5 23.2 234 9-250 264-559 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.2E-35 2.6E-40 267.9 22.6 232 9-250 126-420 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 3.3E-17 7.1E-22 94.8 5.6 50 59-108 1-50 (50)
8 PRK11788 tetratricopeptide rep 99.6 9E-14 2E-18 115.5 21.8 229 14-247 45-310 (389)
9 PRK11788 tetratricopeptide rep 99.6 1.4E-13 3.1E-18 114.3 20.5 236 9-249 74-348 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.6 3.5E-13 7.6E-18 122.6 23.0 196 42-247 685-899 (899)
11 KOG4422 Uncharacterized conser 99.6 2.9E-13 6.4E-18 108.1 19.1 116 9-124 212-341 (625)
12 KOG4422 Uncharacterized conser 99.6 3.8E-13 8.3E-18 107.4 18.9 204 42-250 223-464 (625)
13 PF13041 PPR_2: PPR repeat fam 99.6 3.8E-15 8.2E-20 86.1 4.9 50 182-231 1-50 (50)
14 TIGR02917 PEP_TPR_lipo putativ 99.6 2.4E-12 5.2E-17 117.1 23.7 199 42-248 583-799 (899)
15 PF13429 TPR_15: Tetratricopep 99.3 7.9E-12 1.7E-16 99.3 8.6 230 12-247 16-276 (280)
16 KOG4318 Bicoid mRNA stability 99.3 1.4E-10 3.1E-15 100.1 16.1 197 47-250 11-267 (1088)
17 PF12854 PPR_1: PPR repeat 99.2 1.3E-11 2.8E-16 64.6 3.6 32 56-87 2-33 (34)
18 PF12854 PPR_1: PPR repeat 99.2 1.1E-11 2.4E-16 64.8 3.4 34 90-123 1-34 (34)
19 PRK15174 Vi polysaccharide exp 99.2 1.4E-08 3E-13 89.8 22.2 109 13-124 85-205 (656)
20 PRK15174 Vi polysaccharide exp 99.2 3.7E-08 8.1E-13 87.1 24.2 229 11-248 117-381 (656)
21 TIGR00990 3a0801s09 mitochondr 99.1 3.8E-08 8.2E-13 86.8 22.8 225 15-247 305-570 (615)
22 TIGR00990 3a0801s09 mitochondr 99.1 7.3E-08 1.6E-12 85.0 22.7 143 98-247 333-495 (615)
23 TIGR00540 hemY_coli hemY prote 99.1 1.9E-07 4.2E-12 78.2 23.8 61 186-246 337-397 (409)
24 PRK10747 putative protoheme IX 99.0 1.1E-07 2.4E-12 79.3 20.5 223 17-246 97-388 (398)
25 PRK10747 putative protoheme IX 99.0 2E-07 4.3E-12 77.8 21.8 195 14-211 128-388 (398)
26 TIGR02521 type_IV_pilW type IV 99.0 3.5E-07 7.5E-12 69.9 21.4 183 42-248 47-232 (234)
27 KOG1126 DNA-binding cell divis 98.9 7.9E-08 1.7E-12 81.2 15.8 224 13-246 362-618 (638)
28 PRK11447 cellulose synthase su 98.9 5.3E-07 1.2E-11 84.9 22.6 109 13-124 360-523 (1157)
29 PRK14574 hmsH outer membrane p 98.9 1.5E-06 3.3E-11 78.1 24.3 83 165-247 304-395 (822)
30 KOG1126 DNA-binding cell divis 98.9 2.6E-07 5.5E-12 78.2 17.6 221 20-247 313-585 (638)
31 TIGR00756 PPR pentatricopeptid 98.9 3.5E-09 7.7E-14 55.9 4.0 35 62-96 1-35 (35)
32 PF13812 PPR_3: Pentatricopept 98.8 8E-09 1.7E-13 54.2 4.0 33 62-94 2-34 (34)
33 KOG4626 O-linked N-acetylgluco 98.8 5.5E-07 1.2E-11 76.0 15.8 195 42-247 200-416 (966)
34 PRK12370 invasion protein regu 98.8 2.4E-06 5.2E-11 74.4 20.5 78 43-123 321-399 (553)
35 PRK09782 bacteriophage N4 rece 98.8 3.6E-06 7.7E-11 77.3 22.2 195 42-247 492-705 (987)
36 KOG4626 O-linked N-acetylgluco 98.8 3.4E-07 7.4E-12 77.2 14.1 197 42-246 268-483 (966)
37 PRK11447 cellulose synthase su 98.8 5.3E-06 1.1E-10 78.4 23.6 231 12-247 469-739 (1157)
38 COG2956 Predicted N-acetylgluc 98.7 2.5E-06 5.4E-11 66.7 17.1 203 42-248 51-278 (389)
39 TIGR02521 type_IV_pilW type IV 98.7 4.7E-06 1E-10 63.6 18.9 160 59-247 29-197 (234)
40 PRK14574 hmsH outer membrane p 98.7 7.1E-06 1.5E-10 73.9 22.2 228 13-247 43-355 (822)
41 PF13429 TPR_15: Tetratricopep 98.7 4.9E-08 1.1E-12 77.6 7.9 201 42-248 24-243 (280)
42 TIGR00756 PPR pentatricopeptid 98.7 3.8E-08 8.2E-13 51.8 4.7 35 185-219 1-35 (35)
43 PRK10049 pgaA outer membrane p 98.7 1.4E-05 3.1E-10 72.3 23.7 112 10-124 21-144 (765)
44 PRK10049 pgaA outer membrane p 98.6 2.6E-05 5.6E-10 70.7 23.6 230 9-248 54-339 (765)
45 COG3071 HemY Uncharacterized e 98.6 4.7E-05 1E-09 61.2 21.6 229 12-246 126-388 (400)
46 PF01535 PPR: PPR repeat; Int 98.6 5.7E-08 1.2E-12 49.6 3.1 31 62-92 1-31 (31)
47 KOG1155 Anaphase-promoting com 98.6 7.5E-05 1.6E-09 61.4 21.4 60 184-244 432-491 (559)
48 KOG1840 Kinesin light chain [C 98.6 1.1E-05 2.4E-10 68.4 17.4 219 9-246 204-477 (508)
49 PF13812 PPR_3: Pentatricopept 98.5 1.9E-07 4.2E-12 48.7 4.4 33 185-217 2-34 (34)
50 PF12569 NARP1: NMDA receptor- 98.5 2E-05 4.3E-10 67.4 18.5 231 9-247 43-333 (517)
51 PF01535 PPR: PPR repeat; Int 98.5 1.5E-07 3.2E-12 48.1 3.4 30 221-250 2-31 (31)
52 KOG1173 Anaphase-promoting com 98.5 5.2E-05 1.1E-09 63.6 19.6 229 11-247 251-517 (611)
53 KOG2003 TPR repeat-containing 98.5 2.7E-05 5.9E-10 63.8 17.5 192 17-234 503-709 (840)
54 PRK12370 invasion protein regu 98.4 6E-05 1.3E-09 65.8 20.0 195 42-247 277-501 (553)
55 KOG0495 HAT repeat protein [RN 98.4 0.00035 7.6E-09 60.0 23.2 230 12-247 524-781 (913)
56 PRK09782 bacteriophage N4 rece 98.4 7.4E-05 1.6E-09 68.9 20.8 182 60-248 476-672 (987)
57 KOG1155 Anaphase-promoting com 98.4 4.4E-05 9.6E-10 62.6 17.0 145 62-211 331-493 (559)
58 KOG1129 TPR repeat-containing 98.4 3.2E-05 6.9E-10 60.9 14.9 196 12-212 231-457 (478)
59 COG3071 HemY Uncharacterized e 98.4 0.00066 1.4E-08 54.8 22.5 233 11-249 89-358 (400)
60 KOG2002 TPR-containing nuclear 98.4 6.7E-05 1.5E-09 66.6 18.2 235 9-247 457-744 (1018)
61 COG2956 Predicted N-acetylgluc 98.4 0.00061 1.3E-08 53.7 21.3 188 17-213 48-278 (389)
62 PRK11189 lipoprotein NlpI; Pro 98.4 0.0002 4.3E-09 57.5 19.7 80 42-124 80-160 (296)
63 KOG2003 TPR repeat-containing 98.3 3.6E-05 7.7E-10 63.2 14.4 224 13-248 428-689 (840)
64 PRK11189 lipoprotein NlpI; Pro 98.3 0.00025 5.4E-09 56.9 19.0 204 38-249 38-266 (296)
65 KOG4318 Bicoid mRNA stability 98.3 9.8E-06 2.1E-10 71.1 10.2 216 9-238 30-290 (1088)
66 TIGR00540 hemY_coli hemY prote 98.2 0.00097 2.1E-08 56.1 21.8 223 16-244 96-360 (409)
67 PF12569 NARP1: NMDA receptor- 98.2 0.0004 8.7E-09 59.6 19.4 235 10-249 10-292 (517)
68 PF06239 ECSIT: Evolutionarily 98.2 7.1E-06 1.5E-10 61.0 7.6 70 42-111 68-153 (228)
69 KOG2076 RNA polymerase III tra 98.2 0.0032 7E-08 55.9 23.9 65 183-247 413-477 (895)
70 KOG1128 Uncharacterized conser 98.2 0.00011 2.4E-09 63.5 14.5 191 42-247 414-615 (777)
71 KOG0547 Translocase of outer m 98.1 0.00013 2.8E-09 60.4 13.8 191 13-230 369-578 (606)
72 PF10037 MRP-S27: Mitochondria 98.1 1.8E-05 3.9E-10 65.7 8.8 96 42-138 82-179 (429)
73 TIGR03302 OM_YfiO outer membra 98.1 0.0023 4.9E-08 49.4 20.0 177 60-248 32-232 (235)
74 cd05804 StaR_like StaR_like; a 98.1 0.004 8.6E-08 51.2 22.8 234 13-248 52-336 (355)
75 KOG1129 TPR repeat-containing 98.0 0.0011 2.4E-08 52.5 16.7 177 65-246 227-456 (478)
76 PF04733 Coatomer_E: Coatomer 98.0 4.6E-05 9.9E-10 60.7 8.8 113 9-123 136-263 (290)
77 PF08579 RPM2: Mitochondrial r 98.0 7.1E-05 1.5E-09 49.7 8.2 73 65-138 29-110 (120)
78 KOG2002 TPR-containing nuclear 98.0 0.0018 3.9E-08 58.0 18.6 231 12-248 207-481 (1018)
79 KOG1915 Cell cycle control pro 98.0 0.0035 7.6E-08 52.2 19.0 110 11-124 114-235 (677)
80 PF08579 RPM2: Mitochondrial r 98.0 0.00016 3.4E-09 48.1 9.1 61 42-102 41-110 (120)
81 KOG1070 rRNA processing protei 97.9 0.0021 4.5E-08 59.8 18.4 201 42-245 1474-1697(1710)
82 KOG0495 HAT repeat protein [RN 97.9 0.013 2.9E-07 50.7 21.8 197 42-247 532-747 (913)
83 COG3063 PilF Tfp pilus assembl 97.9 0.0046 1E-07 46.7 16.7 156 63-249 37-203 (250)
84 KOG1840 Kinesin light chain [C 97.9 0.0016 3.5E-08 55.6 16.2 186 61-246 199-436 (508)
85 PF04733 Coatomer_E: Coatomer 97.9 0.00051 1.1E-08 54.7 12.6 154 69-247 110-264 (290)
86 KOG1173 Anaphase-promoting com 97.8 0.0063 1.4E-07 51.6 18.2 203 42-247 260-483 (611)
87 PRK15359 type III secretion sy 97.7 0.0015 3.3E-08 46.4 12.4 92 42-138 40-131 (144)
88 KOG4340 Uncharacterized conser 97.7 0.00051 1.1E-08 53.7 10.3 181 62-250 11-209 (459)
89 KOG1128 Uncharacterized conser 97.7 0.004 8.7E-08 54.2 16.5 175 58-248 395-582 (777)
90 cd05804 StaR_like StaR_like; a 97.7 0.0096 2.1E-07 48.9 18.4 172 13-211 15-213 (355)
91 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00053 1.2E-08 56.7 10.8 114 9-125 174-297 (395)
92 PF12921 ATP13: Mitochondrial 97.7 0.00048 1E-08 47.6 8.8 79 60-138 1-94 (126)
93 KOG0624 dsRNA-activated protei 97.7 0.019 4.1E-07 46.1 18.4 223 12-247 114-369 (504)
94 KOG3785 Uncharacterized conser 97.7 0.012 2.6E-07 47.4 17.0 56 191-246 400-455 (557)
95 COG4783 Putative Zn-dependent 97.7 0.0051 1.1E-07 51.2 15.4 131 15-158 317-460 (484)
96 KOG2076 RNA polymerase III tra 97.6 0.021 4.5E-07 51.0 19.3 233 12-246 215-510 (895)
97 PF10037 MRP-S27: Mitochondria 97.6 0.00044 9.5E-09 57.6 8.9 66 184-249 103-168 (429)
98 TIGR02552 LcrH_SycD type III s 97.6 0.0029 6.3E-08 44.2 11.7 81 42-124 33-113 (135)
99 PRK10370 formate-dependent nit 97.6 0.015 3.3E-07 43.7 15.9 143 9-158 21-179 (198)
100 KOG1174 Anaphase-promoting com 97.6 0.031 6.8E-07 45.9 18.2 213 9-247 237-499 (564)
101 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0057 1.2E-07 50.8 14.6 55 189-244 239-293 (395)
102 KOG0547 Translocase of outer m 97.5 0.043 9.4E-07 46.1 18.7 196 42-246 342-564 (606)
103 PF12895 Apc3: Anaphase-promot 97.4 0.00026 5.6E-09 45.2 4.5 76 43-121 6-83 (84)
104 PRK14720 transcript cleavage f 97.4 0.02 4.3E-07 52.3 17.4 201 9-230 36-268 (906)
105 PRK15179 Vi polysaccharide bio 97.4 0.043 9.4E-07 49.2 19.2 67 57-125 82-149 (694)
106 PF09976 TPR_21: Tetratricopep 97.4 0.021 4.6E-07 40.5 14.3 129 62-245 13-144 (145)
107 KOG1070 rRNA processing protei 97.4 0.032 7E-07 52.4 18.2 197 44-249 1443-1664(1710)
108 PRK10370 formate-dependent nit 97.4 0.011 2.5E-07 44.4 13.3 129 16-150 51-194 (198)
109 KOG1915 Cell cycle control pro 97.4 0.065 1.4E-06 45.0 18.9 184 58-248 319-536 (677)
110 KOG4340 Uncharacterized conser 97.4 0.003 6.4E-08 49.6 9.9 176 64-245 147-372 (459)
111 PRK15179 Vi polysaccharide bio 97.3 0.013 2.9E-07 52.4 15.1 126 9-138 91-228 (694)
112 KOG4162 Predicted calmodulin-b 97.3 0.1 2.2E-06 46.1 20.2 231 13-247 274-541 (799)
113 TIGR03302 OM_YfiO outer membra 97.3 0.028 6.1E-07 43.3 15.4 159 42-212 49-231 (235)
114 PF06239 ECSIT: Evolutionarily 97.3 0.0051 1.1E-07 46.1 10.4 92 44-138 32-144 (228)
115 PF05843 Suf: Suppressor of fo 97.3 0.0066 1.4E-07 48.3 11.8 61 185-246 71-134 (280)
116 TIGR02552 LcrH_SycD type III s 97.3 0.029 6.2E-07 39.0 14.0 116 48-222 5-121 (135)
117 KOG1156 N-terminal acetyltrans 97.3 0.11 2.4E-06 45.1 19.1 233 12-249 193-469 (700)
118 KOG3941 Intermediate in Toll s 97.3 0.0009 1.9E-08 52.0 6.0 70 42-111 88-173 (406)
119 PF05843 Suf: Suppressor of fo 97.2 0.002 4.3E-08 51.3 8.3 114 10-125 7-136 (280)
120 KOG3060 Uncharacterized conser 97.1 0.077 1.7E-06 40.9 15.5 74 173-247 143-219 (289)
121 PRK15359 type III secretion sy 97.1 0.047 1E-06 38.7 13.5 101 46-153 13-122 (144)
122 cd00189 TPR Tetratricopeptide 97.1 0.007 1.5E-07 38.3 8.5 80 43-124 17-96 (100)
123 KOG3081 Vesicle coat complex C 97.1 0.06 1.3E-06 41.7 14.0 139 103-245 115-268 (299)
124 COG5010 TadD Flp pilus assembl 97.0 0.012 2.6E-07 45.2 10.1 82 42-125 116-197 (257)
125 PF03704 BTAD: Bacterial trans 97.0 0.03 6.5E-07 39.7 11.6 112 16-135 18-139 (146)
126 PF13432 TPR_16: Tetratricopep 97.0 0.0031 6.8E-08 37.9 5.6 57 191-248 4-60 (65)
127 PF09976 TPR_21: Tetratricopep 97.0 0.011 2.3E-07 42.1 9.2 77 42-120 64-142 (145)
128 KOG3081 Vesicle coat complex C 97.0 0.044 9.6E-07 42.4 12.7 110 12-125 116-236 (299)
129 COG5010 TadD Flp pilus assembl 97.0 0.07 1.5E-06 41.1 13.8 60 63-123 102-161 (257)
130 KOG1156 N-terminal acetyltrans 97.0 0.22 4.7E-06 43.4 18.3 121 16-138 53-185 (700)
131 PRK15363 pathogenicity island 97.0 0.045 9.7E-07 39.1 12.0 104 42-150 51-154 (157)
132 PF09205 DUF1955: Domain of un 96.9 0.048 1E-06 37.6 11.3 137 107-250 13-151 (161)
133 PF14559 TPR_19: Tetratricopep 96.9 0.00089 1.9E-08 40.7 2.8 52 195-247 2-53 (68)
134 KOG2047 mRNA splicing factor [ 96.9 0.26 5.6E-06 43.1 19.9 79 165-246 523-613 (835)
135 KOG1125 TPR repeat-containing 96.9 0.1 2.2E-06 44.7 15.1 83 162-246 439-525 (579)
136 PF12921 ATP13: Mitochondrial 96.9 0.006 1.3E-07 42.2 6.8 99 95-232 1-101 (126)
137 KOG1174 Anaphase-promoting com 96.8 0.23 4.9E-06 41.2 18.0 183 58-245 191-394 (564)
138 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.053 1.2E-06 36.5 11.3 60 188-247 43-104 (119)
139 KOG1914 mRNA cleavage and poly 96.8 0.25 5.4E-06 42.2 16.7 146 77-246 347-499 (656)
140 COG4783 Putative Zn-dependent 96.7 0.099 2.1E-06 43.9 13.9 27 182-208 406-432 (484)
141 COG3063 PilF Tfp pilus assembl 96.7 0.17 3.6E-06 38.5 18.7 169 42-241 51-229 (250)
142 KOG2053 Mitochondrial inherita 96.7 0.43 9.3E-06 43.2 18.9 57 193-249 199-256 (932)
143 KOG3060 Uncharacterized conser 96.7 0.16 3.5E-06 39.2 13.9 109 15-125 63-183 (289)
144 PF14559 TPR_19: Tetratricopep 96.7 0.0049 1.1E-07 37.3 5.0 52 72-124 2-53 (68)
145 PLN03088 SGT1, suppressor of 96.7 0.048 1E-06 45.0 12.1 80 42-124 18-98 (356)
146 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.06 1.3E-06 36.2 10.8 65 61-125 39-105 (119)
147 KOG2376 Signal recognition par 96.7 0.37 7.9E-06 41.6 18.4 59 185-243 340-400 (652)
148 PLN02789 farnesyltranstransfer 96.7 0.27 5.9E-06 39.9 20.4 218 12-245 45-299 (320)
149 KOG2047 mRNA splicing factor [ 96.6 0.35 7.6E-06 42.3 16.8 62 185-246 388-452 (835)
150 PRK04841 transcriptional regul 96.6 0.63 1.4E-05 43.5 21.1 235 13-248 461-760 (903)
151 KOG3616 Selective LIM binding 96.6 0.13 2.8E-06 45.7 14.0 48 186-242 884-931 (1636)
152 PF13432 TPR_16: Tetratricopep 96.6 0.011 2.3E-07 35.5 5.8 57 67-124 3-59 (65)
153 PF12895 Apc3: Anaphase-promot 96.6 0.0021 4.5E-08 41.0 2.7 60 184-245 25-84 (84)
154 PF13414 TPR_11: TPR repeat; P 96.6 0.013 2.8E-07 35.6 6.1 64 60-124 2-66 (69)
155 PF14938 SNAP: Soluble NSF att 96.4 0.38 8.3E-06 38.3 16.0 62 185-246 156-223 (282)
156 PF13414 TPR_11: TPR repeat; P 96.4 0.0084 1.8E-07 36.4 4.4 63 184-247 3-66 (69)
157 PF13424 TPR_12: Tetratricopep 96.4 0.0083 1.8E-07 37.5 4.5 63 61-123 5-73 (78)
158 cd00189 TPR Tetratricopeptide 96.3 0.048 1E-06 34.2 8.1 82 166-248 13-97 (100)
159 PF13371 TPR_9: Tetratricopept 96.2 0.026 5.6E-07 34.6 6.1 56 192-248 3-58 (73)
160 PF13424 TPR_12: Tetratricopep 96.0 0.0069 1.5E-07 37.8 2.8 63 185-247 6-74 (78)
161 KOG2376 Signal recognition par 96.0 0.97 2.1E-05 39.2 18.2 65 184-248 172-253 (652)
162 PRK02603 photosystem I assembl 95.9 0.25 5.3E-06 36.1 11.1 65 60-124 34-100 (172)
163 PRK15363 pathogenicity island 95.9 0.13 2.8E-06 36.8 8.9 83 165-248 47-132 (157)
164 KOG3785 Uncharacterized conser 95.8 0.86 1.9E-05 37.2 14.6 55 67-122 399-454 (557)
165 PRK10153 DNA-binding transcrip 95.8 0.27 5.8E-06 42.8 12.2 114 20-135 358-492 (517)
166 PRK10866 outer membrane biogen 95.7 0.73 1.6E-05 35.9 18.3 60 189-248 180-241 (243)
167 PF03704 BTAD: Bacterial trans 95.7 0.04 8.6E-07 39.1 6.0 61 186-247 64-124 (146)
168 KOG0985 Vesicle coat protein c 95.7 1.3 2.7E-05 41.3 16.0 177 59-242 982-1189(1666)
169 PLN03088 SGT1, suppressor of 95.6 0.16 3.4E-06 42.0 10.0 88 13-103 11-110 (356)
170 PF04840 Vps16_C: Vps16, C-ter 95.5 1.1 2.4E-05 36.5 17.7 75 165-245 189-263 (319)
171 PF13371 TPR_9: Tetratricopept 95.4 0.075 1.6E-06 32.5 5.8 56 69-125 3-58 (73)
172 CHL00033 ycf3 photosystem I as 95.3 0.74 1.6E-05 33.4 12.6 65 60-124 34-100 (168)
173 cd00923 Cyt_c_Oxidase_Va Cytoc 95.2 0.29 6.4E-06 31.7 7.8 71 76-148 22-92 (103)
174 KOG1538 Uncharacterized conser 95.1 0.62 1.3E-05 41.0 11.8 20 192-211 825-844 (1081)
175 PRK02603 photosystem I assembl 95.1 0.38 8.3E-06 35.1 9.6 70 42-113 51-123 (172)
176 KOG3617 WD40 and TPR repeat-co 95.1 0.43 9.4E-06 43.1 11.0 54 187-246 941-994 (1416)
177 KOG4162 Predicted calmodulin-b 95.0 2.5 5.3E-05 38.0 17.7 82 42-124 460-541 (799)
178 PRK14720 transcript cleavage f 95.0 1.3 2.7E-05 41.1 14.2 59 58-118 28-87 (906)
179 PF12688 TPR_5: Tetratrico pep 94.9 0.55 1.2E-05 32.1 9.3 79 42-122 17-101 (120)
180 PF04840 Vps16_C: Vps16, C-ter 94.9 0.56 1.2E-05 38.1 10.8 109 97-243 178-286 (319)
181 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.15 3.3E-06 42.8 7.5 66 58-125 72-141 (453)
182 PF02284 COX5A: Cytochrome c o 94.9 0.21 4.6E-06 32.7 6.6 69 79-149 28-96 (108)
183 CHL00033 ycf3 photosystem I as 94.9 0.51 1.1E-05 34.2 9.8 78 42-121 51-138 (168)
184 PF13170 DUF4003: Protein of u 94.8 0.9 2E-05 36.5 11.6 94 42-138 119-223 (297)
185 KOG0553 TPR repeat-containing 94.7 0.59 1.3E-05 37.0 9.9 96 42-143 97-193 (304)
186 PF07079 DUF1347: Protein of u 94.7 0.79 1.7E-05 38.6 11.0 144 72-232 17-180 (549)
187 KOG3617 WD40 and TPR repeat-co 94.6 0.76 1.6E-05 41.7 11.4 60 60-125 725-786 (1416)
188 KOG1585 Protein required for f 94.6 1.6 3.6E-05 33.7 13.7 72 13-86 40-116 (308)
189 KOG1914 mRNA cleavage and poly 94.5 2.9 6.2E-05 36.2 17.2 166 43-234 348-525 (656)
190 PRK10153 DNA-binding transcrip 94.5 3.1 6.7E-05 36.4 15.6 140 90-247 331-481 (517)
191 PF14938 SNAP: Soluble NSF att 94.4 0.54 1.2E-05 37.5 9.7 113 10-124 100-224 (282)
192 PLN02789 farnesyltranstransfer 94.4 2.3 5E-05 34.6 16.7 193 18-247 34-249 (320)
193 COG5107 RNA14 Pre-mRNA 3'-end 94.3 2.9 6.2E-05 35.4 13.3 62 61-123 397-459 (660)
194 KOG0548 Molecular co-chaperone 94.3 2 4.3E-05 36.8 12.7 133 13-151 307-454 (539)
195 PF02259 FAT: FAT domain; Int 94.2 2.4 5.1E-05 34.7 13.4 66 182-247 144-212 (352)
196 PF13170 DUF4003: Protein of u 94.1 2.5 5.5E-05 34.0 15.6 48 78-125 79-132 (297)
197 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.38 8.3E-06 40.5 8.2 65 182-248 73-141 (453)
198 COG5107 RNA14 Pre-mRNA 3'-end 93.9 3.5 7.6E-05 34.9 15.4 83 25-110 30-123 (660)
199 PF12688 TPR_5: Tetratrico pep 93.8 1.2 2.5E-05 30.6 9.0 59 67-125 7-67 (120)
200 PF09205 DUF1955: Domain of un 93.8 1.6 3.4E-05 30.5 9.5 110 17-129 15-152 (161)
201 KOG0985 Vesicle coat protein c 93.7 3.4 7.4E-05 38.6 13.7 64 62-132 1105-1168(1666)
202 PRK10803 tol-pal system protei 93.5 1.7 3.7E-05 34.3 10.7 81 42-125 159-246 (263)
203 KOG1125 TPR repeat-containing 93.5 4.7 0.0001 35.0 15.3 65 182-247 428-492 (579)
204 KOG1127 TPR repeat-containing 93.4 6.9 0.00015 36.6 15.7 80 165-247 574-658 (1238)
205 cd00923 Cyt_c_Oxidase_Va Cytoc 93.3 0.67 1.4E-05 30.1 6.5 60 44-104 25-84 (103)
206 PF13929 mRNA_stabil: mRNA sta 93.3 3.4 7.4E-05 32.8 12.5 82 165-250 181-265 (292)
207 PF02284 COX5A: Cytochrome c o 93.2 0.66 1.4E-05 30.5 6.5 59 45-104 29-87 (108)
208 KOG2796 Uncharacterized conser 93.1 2.2 4.9E-05 33.4 10.2 76 62-138 178-253 (366)
209 PF13176 TPR_7: Tetratricopept 93.0 0.22 4.8E-06 25.8 3.5 24 222-245 2-25 (36)
210 PF07035 Mic1: Colon cancer-as 93.0 2.6 5.7E-05 30.6 11.9 38 81-118 14-51 (167)
211 KOG4570 Uncharacterized conser 93.0 1.1 2.5E-05 35.9 8.7 82 42-125 80-164 (418)
212 KOG0553 TPR repeat-containing 92.8 0.86 1.9E-05 36.1 7.7 87 14-103 91-189 (304)
213 PF07079 DUF1347: Protein of u 92.7 5.5 0.00012 33.8 17.8 122 14-138 16-173 (549)
214 KOG3941 Intermediate in Toll s 92.6 0.37 8.1E-06 37.9 5.5 69 167-235 89-174 (406)
215 KOG4077 Cytochrome c oxidase, 92.4 1.7 3.6E-05 29.9 7.7 88 60-149 46-135 (149)
216 PF13176 TPR_7: Tetratricopept 92.2 0.29 6.4E-06 25.3 3.3 23 64-86 2-24 (36)
217 PF13281 DUF4071: Domain of un 92.1 6.1 0.00013 32.9 17.5 72 66-138 146-223 (374)
218 COG3629 DnrI DNA-binding trans 92.1 1.9 4.1E-05 34.2 9.1 73 62-135 154-230 (280)
219 COG3629 DnrI DNA-binding trans 92.1 0.8 1.7E-05 36.3 7.0 61 186-247 155-215 (280)
220 PRK15331 chaperone protein Sic 91.8 3.8 8.2E-05 29.7 11.5 100 42-150 53-152 (165)
221 PF04184 ST7: ST7 protein; In 91.6 4.7 0.0001 34.6 11.1 78 65-143 263-342 (539)
222 PRK10803 tol-pal system protei 91.6 1.3 2.7E-05 35.0 7.6 63 186-248 182-246 (263)
223 PF13428 TPR_14: Tetratricopep 91.5 0.39 8.4E-06 26.1 3.5 28 221-248 3-30 (44)
224 PF10602 RPN7: 26S proteasome 91.3 2.3 5E-05 31.3 8.4 77 62-138 37-115 (177)
225 PF10300 DUF3808: Protein of u 91.3 1.9 4.2E-05 37.1 9.0 95 42-138 249-347 (468)
226 PF10300 DUF3808: Protein of u 91.2 7.4 0.00016 33.6 12.5 140 102-246 194-374 (468)
227 PF08631 SPO22: Meiosis protei 91.2 6.5 0.00014 31.3 18.4 108 15-125 4-150 (278)
228 PF04184 ST7: ST7 protein; In 90.7 10 0.00022 32.7 12.5 57 189-245 264-321 (539)
229 KOG3616 Selective LIM binding 90.5 1.1 2.4E-05 40.2 6.9 95 10-115 738-843 (1636)
230 KOG1127 TPR repeat-containing 90.4 6.7 0.00014 36.7 11.6 30 218-247 595-624 (1238)
231 KOG4570 Uncharacterized conser 89.9 1 2.2E-05 36.1 5.6 84 9-92 69-166 (418)
232 COG1729 Uncharacterized protei 89.7 7.2 0.00016 30.6 10.1 60 63-125 144-207 (262)
233 PF13428 TPR_14: Tetratricopep 89.6 0.79 1.7E-05 24.9 3.6 38 186-224 3-40 (44)
234 PF13374 TPR_10: Tetratricopep 89.3 1.1 2.4E-05 23.5 4.1 26 62-87 3-28 (42)
235 KOG4555 TPR repeat-containing 89.2 5.8 0.00013 27.7 8.1 82 42-125 59-144 (175)
236 COG4235 Cytochrome c biogenesi 89.0 4.3 9.2E-05 32.3 8.5 81 42-125 172-256 (287)
237 PRK15331 chaperone protein Sic 89.0 7.1 0.00015 28.3 8.9 82 165-247 49-133 (165)
238 PF13374 TPR_10: Tetratricopep 88.9 0.88 1.9E-05 23.9 3.5 24 222-245 5-28 (42)
239 PF00637 Clathrin: Region in C 88.7 0.23 5E-06 35.0 1.3 74 42-122 23-96 (143)
240 KOG0543 FKBP-type peptidyl-pro 88.3 14 0.0003 30.9 14.4 103 13-124 217-319 (397)
241 PF11207 DUF2989: Protein of u 88.3 5.5 0.00012 29.9 8.2 73 42-115 122-197 (203)
242 PF13431 TPR_17: Tetratricopep 88.2 0.66 1.4E-05 23.7 2.5 24 58-81 10-33 (34)
243 PF04053 Coatomer_WDAD: Coatom 88.0 6.1 0.00013 33.8 9.4 74 165-249 330-403 (443)
244 KOG1538 Uncharacterized conser 87.8 12 0.00025 33.5 10.8 59 61-122 598-658 (1081)
245 PF11663 Toxin_YhaV: Toxin wit 87.7 0.75 1.6E-05 31.9 3.2 28 42-71 111-138 (140)
246 PF13525 YfiO: Outer membrane 87.6 10 0.00022 28.5 16.1 159 69-239 13-198 (203)
247 PF10602 RPN7: 26S proteasome 87.5 2.3 4.9E-05 31.4 5.9 62 185-246 37-100 (177)
248 KOG2053 Mitochondrial inherita 87.0 25 0.00055 32.5 18.5 79 42-124 25-105 (932)
249 COG1729 Uncharacterized protei 86.7 13 0.00029 29.2 9.8 82 42-125 157-244 (262)
250 KOG2280 Vacuolar assembly/sort 86.6 25 0.00054 32.0 15.2 113 9-123 442-573 (829)
251 TIGR03504 FimV_Cterm FimV C-te 86.2 1.6 3.6E-05 23.8 3.4 23 225-247 5-27 (44)
252 cd00280 TRFH Telomeric Repeat 85.7 12 0.00027 27.7 8.7 67 42-111 85-158 (200)
253 PF00515 TPR_1: Tetratricopept 85.3 2.1 4.5E-05 21.4 3.5 27 221-247 3-29 (34)
254 PF00637 Clathrin: Region in C 85.0 1 2.2E-05 31.6 2.9 125 66-199 12-140 (143)
255 PF11663 Toxin_YhaV: Toxin wit 84.8 1.3 2.9E-05 30.7 3.2 35 193-229 104-138 (140)
256 PF13929 mRNA_stabil: mRNA sta 84.7 11 0.00024 30.0 8.6 65 57-121 198-263 (292)
257 PF00515 TPR_1: Tetratricopept 84.6 3.3 7.1E-05 20.6 4.1 27 63-89 3-29 (34)
258 PF13512 TPR_18: Tetratricopep 84.2 5.1 0.00011 28.3 6.0 49 185-233 48-96 (142)
259 PF07721 TPR_4: Tetratricopept 83.7 1.6 3.6E-05 20.5 2.5 21 223-243 5-25 (26)
260 PRK10866 outer membrane biogen 83.2 20 0.00043 27.9 14.7 161 42-211 48-239 (243)
261 COG4105 ComL DNA uptake lipopr 83.0 20 0.00044 28.0 18.1 55 190-245 173-230 (254)
262 PF07719 TPR_2: Tetratricopept 82.2 3.3 7.2E-05 20.4 3.5 26 222-247 4-29 (34)
263 PF13181 TPR_8: Tetratricopept 82.1 3.6 7.8E-05 20.4 3.6 25 222-246 4-28 (34)
264 PF13174 TPR_6: Tetratricopept 81.6 1.5 3.2E-05 21.6 2.0 24 13-36 9-32 (33)
265 TIGR03504 FimV_Cterm FimV C-te 81.2 3.2 6.9E-05 22.7 3.3 21 104-124 7-27 (44)
266 PRK04841 transcriptional regul 80.7 51 0.0011 31.0 23.1 205 42-247 468-719 (903)
267 KOG4555 TPR repeat-containing 79.7 18 0.0004 25.3 8.9 59 70-129 52-110 (175)
268 COG4235 Cytochrome c biogenesi 79.3 30 0.00066 27.6 10.8 113 93-228 153-269 (287)
269 KOG0548 Molecular co-chaperone 79.2 42 0.00092 29.2 13.6 192 42-246 240-453 (539)
270 smart00299 CLH Clathrin heavy 78.6 19 0.00042 24.9 8.1 57 59-122 39-95 (140)
271 PF13525 YfiO: Outer membrane 78.1 6.2 0.00013 29.7 5.2 53 194-246 15-69 (203)
272 PF08311 Mad3_BUB1_I: Mad3/BUB 78.0 20 0.00043 24.7 8.1 75 42-121 49-124 (126)
273 PF08311 Mad3_BUB1_I: Mad3/BUB 77.7 20 0.00044 24.7 8.5 77 167-245 47-125 (126)
274 KOG2796 Uncharacterized conser 77.3 34 0.00075 27.1 9.5 83 42-124 193-280 (366)
275 KOG4077 Cytochrome c oxidase, 77.1 22 0.00047 24.7 8.1 87 13-103 37-125 (149)
276 PF14669 Asp_Glu_race_2: Putat 77.1 6.3 0.00014 29.4 4.6 57 65-121 136-206 (233)
277 KOG2041 WD40 repeat protein [G 76.8 59 0.0013 29.7 11.0 35 94-128 690-724 (1189)
278 PF10366 Vps39_1: Vacuolar sor 76.6 7.3 0.00016 26.1 4.6 28 97-124 40-67 (108)
279 PF11848 DUF3368: Domain of un 76.6 9 0.00019 21.3 4.3 33 72-104 13-45 (48)
280 KOG2114 Vacuolar assembly/sort 76.6 59 0.0013 30.2 11.1 74 42-119 413-486 (933)
281 PRK11639 zinc uptake transcrip 76.5 19 0.00042 26.2 7.2 69 169-237 10-78 (169)
282 PF10345 Cohesin_load: Cohesin 76.0 60 0.0013 29.2 20.0 176 71-247 371-605 (608)
283 smart00299 CLH Clathrin heavy 75.9 24 0.00051 24.5 11.2 56 63-120 9-64 (140)
284 PF11846 DUF3366: Domain of un 75.7 13 0.00028 27.6 6.3 30 182-211 142-171 (193)
285 PF11846 DUF3366: Domain of un 75.7 16 0.00034 27.2 6.8 60 66-125 113-173 (193)
286 TIGR02561 HrpB1_HrpK type III 75.2 25 0.00054 25.1 7.0 17 195-211 55-71 (153)
287 PF07035 Mic1: Colon cancer-as 74.9 30 0.00065 25.2 12.0 59 45-107 13-71 (167)
288 KOG2610 Uncharacterized conser 74.4 46 0.001 27.4 9.1 25 186-210 249-273 (491)
289 COG4700 Uncharacterized protei 74.1 35 0.00075 25.6 8.0 83 165-247 101-188 (251)
290 PF14689 SPOB_a: Sensor_kinase 73.9 6.1 0.00013 23.4 3.3 23 224-246 28-50 (62)
291 PF04053 Coatomer_WDAD: Coatom 73.5 19 0.0004 31.0 7.3 48 70-123 327-374 (443)
292 PF13762 MNE1: Mitochondrial s 73.0 11 0.00024 26.7 4.9 55 59-113 77-132 (145)
293 COG4455 ImpE Protein of avirul 72.7 22 0.00047 27.4 6.6 53 188-241 5-57 (273)
294 smart00028 TPR Tetratricopepti 72.4 6.6 0.00014 18.1 2.9 25 222-246 4-28 (34)
295 COG4649 Uncharacterized protei 72.3 33 0.00071 25.4 7.2 110 14-125 68-196 (221)
296 COG4785 NlpI Lipoprotein NlpI, 72.1 43 0.00093 25.8 11.7 151 61-213 99-266 (297)
297 PF14689 SPOB_a: Sensor_kinase 72.1 6.4 0.00014 23.3 3.1 26 64-89 26-51 (62)
298 PF10579 Rapsyn_N: Rapsyn N-te 72.1 11 0.00024 23.6 4.1 42 42-83 22-65 (80)
299 PF11848 DUF3368: Domain of un 70.1 12 0.00026 20.8 3.7 37 191-227 9-45 (48)
300 PRK10564 maltose regulon perip 70.0 7.4 0.00016 31.2 3.9 38 57-94 252-290 (303)
301 COG0735 Fur Fe2+/Zn2+ uptake r 69.8 26 0.00057 24.8 6.4 68 169-236 5-72 (145)
302 PRK10564 maltose regulon perip 68.8 8.7 0.00019 30.8 4.0 44 91-135 251-295 (303)
303 KOG2280 Vacuolar assembly/sort 68.2 68 0.0015 29.4 9.5 117 91-244 679-795 (829)
304 PF10366 Vps39_1: Vacuolar sor 67.1 25 0.00054 23.5 5.5 50 185-234 40-94 (108)
305 PF13512 TPR_18: Tetratricopep 65.9 45 0.00097 23.6 9.1 52 196-247 22-75 (142)
306 PF09613 HrpB1_HrpK: Bacterial 65.9 48 0.001 24.0 8.2 62 71-135 54-115 (160)
307 PF10579 Rapsyn_N: Rapsyn N-te 65.4 12 0.00026 23.4 3.4 47 196-242 18-66 (80)
308 PF06552 TOM20_plant: Plant sp 65.2 27 0.00059 25.8 5.6 76 42-125 51-136 (186)
309 PF09868 DUF2095: Uncharacteri 63.3 13 0.00028 25.0 3.4 49 4-56 61-109 (128)
310 KOG2041 WD40 repeat protein [G 63.0 1.3E+02 0.0027 27.8 15.5 54 192-245 1029-1083(1189)
311 COG3947 Response regulator con 62.5 47 0.001 26.8 6.8 70 64-134 282-355 (361)
312 PF13281 DUF4071: Domain of un 62.1 95 0.0021 26.1 18.7 152 42-213 157-334 (374)
313 COG4700 Uncharacterized protei 61.9 66 0.0014 24.2 14.1 68 57-124 85-152 (251)
314 COG3898 Uncharacterized membra 61.7 1E+02 0.0022 26.2 16.8 86 42-132 136-224 (531)
315 PF08631 SPO22: Meiosis protei 61.2 82 0.0018 25.0 14.8 163 72-246 4-184 (278)
316 COG0735 Fur Fe2+/Zn2+ uptake r 60.7 57 0.0012 23.1 7.6 43 82-125 7-49 (145)
317 PF14853 Fis1_TPR_C: Fis1 C-te 60.7 28 0.0006 19.9 4.1 32 68-101 8-39 (53)
318 PF11817 Foie-gras_1: Foie gra 60.6 63 0.0014 25.2 7.5 80 42-123 161-245 (247)
319 PF09613 HrpB1_HrpK: Bacterial 60.0 64 0.0014 23.4 9.4 63 166-232 26-90 (160)
320 PHA02875 ankyrin repeat protei 59.9 1E+02 0.0023 25.8 12.1 103 11-119 6-122 (413)
321 cd08315 Death_TRAILR_DR4_DR5 D 59.7 46 0.001 21.7 6.1 48 200-249 47-94 (96)
322 PF10475 DUF2450: Protein of u 59.6 91 0.002 25.0 9.6 54 65-124 102-155 (291)
323 KOG0550 Molecular chaperone (D 59.4 1.1E+02 0.0024 26.0 11.3 150 94-247 166-349 (486)
324 KOG3807 Predicted membrane pro 58.6 1E+02 0.0023 25.4 9.3 79 66-145 280-360 (556)
325 PRK15180 Vi polysaccharide bio 57.7 83 0.0018 27.4 7.9 110 42-155 306-423 (831)
326 KOG0543 FKBP-type peptidyl-pro 57.4 56 0.0012 27.5 6.8 21 192-212 299-319 (397)
327 cd07153 Fur_like Ferric uptake 56.8 26 0.00056 23.4 4.3 48 189-236 5-52 (116)
328 KOG2062 26S proteasome regulat 56.1 1.2E+02 0.0027 27.9 9.0 68 42-109 39-108 (929)
329 PF13762 MNE1: Mitochondrial s 56.1 71 0.0015 22.7 9.7 86 52-138 28-121 (145)
330 smart00386 HAT HAT (Half-A-TPR 55.8 16 0.00034 17.4 2.4 29 198-227 1-29 (33)
331 PF12926 MOZART2: Mitotic-spin 55.8 52 0.0011 21.0 5.6 43 82-124 29-71 (88)
332 KOG0889 Histone acetyltransfer 55.2 85 0.0018 34.2 8.8 107 13-121 2491-2615(3550)
333 smart00777 Mad3_BUB1_I Mad3/BU 54.9 53 0.0012 22.7 5.5 74 42-120 49-123 (125)
334 COG1747 Uncharacterized N-term 54.6 1.5E+02 0.0033 26.1 14.4 166 59-229 64-249 (711)
335 PF02184 HAT: HAT (Half-A-TPR) 54.3 21 0.00045 18.0 2.5 24 199-224 2-25 (32)
336 smart00777 Mad3_BUB1_I Mad3/BU 54.2 70 0.0015 22.1 6.4 43 201-243 80-123 (125)
337 PF14669 Asp_Glu_race_2: Putat 54.1 93 0.002 23.5 13.9 175 55-244 2-206 (233)
338 PF11817 Foie-gras_1: Foie gra 53.5 74 0.0016 24.8 6.8 58 189-246 183-245 (247)
339 KOG0687 26S proteasome regulat 52.7 1.3E+02 0.0028 24.8 10.1 20 75-94 36-55 (393)
340 PF08986 DUF1889: Domain of un 52.7 38 0.00082 21.9 4.1 43 20-62 25-67 (119)
341 cd00280 TRFH Telomeric Repeat 51.8 99 0.0021 23.1 11.2 40 190-232 117-156 (200)
342 PF01475 FUR: Ferric uptake re 51.2 22 0.00047 24.1 3.2 50 187-236 10-59 (120)
343 KOG4648 Uncharacterized conser 50.6 59 0.0013 26.9 5.8 77 162-246 106-185 (536)
344 TIGR02508 type_III_yscG type I 50.1 74 0.0016 21.2 7.8 85 42-135 21-105 (115)
345 KOG2114 Vacuolar assembly/sort 50.0 2.2E+02 0.0049 26.7 10.8 55 68-123 404-458 (933)
346 COG4003 Uncharacterized protei 50.0 28 0.0006 21.9 3.1 26 8-33 35-60 (98)
347 KOG1920 IkappaB kinase complex 49.7 2.6E+02 0.0057 27.4 13.8 31 58-89 788-820 (1265)
348 KOG2063 Vacuolar assembly/sort 49.6 61 0.0013 30.5 6.4 130 97-232 505-639 (877)
349 PRK09462 fur ferric uptake reg 49.6 60 0.0013 22.9 5.4 62 175-236 7-69 (148)
350 PF10475 DUF2450: Protein of u 49.4 66 0.0014 25.8 6.1 22 94-115 195-216 (291)
351 KOG1550 Extracellular protein 48.2 2E+02 0.0044 25.6 13.7 83 42-131 228-327 (552)
352 PF12862 Apc5: Anaphase-promot 47.5 74 0.0016 20.4 5.5 53 195-247 9-69 (94)
353 cd08318 Death_NMPP84 Death dom 47.5 53 0.0011 20.8 4.3 43 198-242 44-86 (86)
354 PF15469 Sec5: Exocyst complex 47.1 1.1E+02 0.0024 22.4 6.7 81 8-98 90-176 (182)
355 smart00804 TAP_C C-terminal do 46.3 18 0.00039 21.5 1.8 16 74-89 38-53 (63)
356 PF07443 HARP: HepA-related pr 46.2 13 0.00029 21.4 1.2 34 198-231 6-39 (55)
357 PF09477 Type_III_YscG: Bacter 46.0 91 0.002 21.0 8.5 77 42-125 22-98 (116)
358 PF02607 B12-binding_2: B12 bi 45.5 37 0.0008 20.8 3.4 40 72-111 12-51 (79)
359 PF04124 Dor1: Dor1-like famil 44.7 40 0.00086 27.8 4.3 47 7-53 109-160 (338)
360 TIGR02508 type_III_yscG type I 44.2 95 0.0021 20.7 5.7 53 191-249 46-98 (115)
361 PF09986 DUF2225: Uncharacteri 44.0 1.4E+02 0.0031 22.7 8.0 20 71-90 175-194 (214)
362 PF09670 Cas_Cas02710: CRISPR- 43.7 1E+02 0.0022 25.9 6.6 57 190-247 137-197 (379)
363 PF00531 Death: Death domain; 43.5 53 0.0011 20.2 3.9 43 199-243 39-81 (83)
364 PRK12928 lipoyl synthase; Prov 42.5 1.1E+02 0.0024 24.6 6.3 25 101-125 176-200 (290)
365 KOG0550 Molecular chaperone (D 42.2 2.2E+02 0.0048 24.4 14.6 110 12-123 177-314 (486)
366 KOG4567 GTPase-activating prot 42.0 1.9E+02 0.0042 23.6 7.4 45 81-125 263-307 (370)
367 PF08963 DUF1878: Protein of u 41.4 1E+02 0.0022 20.8 4.9 73 9-86 32-107 (113)
368 PF04097 Nic96: Nup93/Nic96; 41.0 2.8E+02 0.006 25.2 12.7 44 66-110 116-159 (613)
369 COG4649 Uncharacterized protei 40.9 1.5E+02 0.0033 22.1 10.5 109 42-151 74-195 (221)
370 COG4455 ImpE Protein of avirul 40.5 1.7E+02 0.0038 22.7 7.6 73 64-138 4-78 (273)
371 COG2405 Predicted nucleic acid 40.4 56 0.0012 23.0 3.7 24 9-32 7-30 (157)
372 PRK11639 zinc uptake transcrip 40.3 1.4E+02 0.0031 21.7 7.9 60 52-112 17-76 (169)
373 cd07153 Fur_like Ferric uptake 39.9 95 0.0021 20.6 5.0 15 77-91 16-30 (116)
374 PF06368 Met_asp_mut_E: Methyl 39.4 31 0.00067 29.3 2.8 92 8-102 51-178 (441)
375 PHA02148 hypothetical protein 39.3 95 0.0021 19.9 4.3 32 127-158 18-51 (110)
376 COG3947 Response regulator con 39.3 2.1E+02 0.0046 23.3 14.7 181 42-247 149-341 (361)
377 PF09454 Vps23_core: Vps23 cor 39.0 71 0.0015 19.1 3.6 48 58-106 5-52 (65)
378 PF09868 DUF2095: Uncharacteri 39.0 1.2E+02 0.0027 20.5 5.3 28 189-216 66-93 (128)
379 COG3898 Uncharacterized membra 39.0 2.5E+02 0.0054 24.0 18.8 222 17-246 133-390 (531)
380 KOG2066 Vacuolar assembly/sort 38.8 3.3E+02 0.0072 25.4 9.4 55 69-125 364-421 (846)
381 TIGR00510 lipA lipoate synthas 38.8 1.2E+02 0.0025 24.7 5.9 24 101-124 179-202 (302)
382 PRK09857 putative transposase; 38.7 2.1E+02 0.0045 23.1 7.6 63 187-250 209-271 (292)
383 smart00164 TBC Domain in Tre-2 38.6 92 0.002 23.0 5.2 44 82-125 152-196 (199)
384 TIGR01987 HI0074 nucleotidyltr 38.3 76 0.0017 21.8 4.2 45 9-53 64-108 (123)
385 PF09986 DUF2225: Uncharacteri 38.2 1.3E+02 0.0028 23.0 5.9 33 185-217 165-198 (214)
386 PF04124 Dor1: Dor1-like famil 37.6 77 0.0017 26.1 4.9 21 102-122 112-132 (338)
387 KOG1550 Extracellular protein 37.2 3E+02 0.0066 24.5 11.1 80 42-125 265-357 (552)
388 PRK09462 fur ferric uptake reg 36.9 1.5E+02 0.0033 20.9 7.4 15 111-125 32-46 (148)
389 cd08315 Death_TRAILR_DR4_DR5 D 36.4 99 0.0021 20.2 4.3 33 183-215 63-95 (96)
390 PF07163 Pex26: Pex26 protein; 36.3 2.3E+02 0.005 22.9 8.0 63 64-128 86-150 (309)
391 COG4003 Uncharacterized protei 36.0 74 0.0016 20.1 3.4 27 185-211 31-58 (98)
392 PF02631 RecX: RecX family; I 35.7 1.2E+02 0.0026 20.5 5.0 48 45-93 11-58 (121)
393 PRK11906 transcriptional regul 35.5 3E+02 0.0065 23.9 13.4 20 104-123 346-365 (458)
394 TIGR02561 HrpB1_HrpK type III 35.5 1.7E+02 0.0037 21.1 8.8 50 197-248 23-73 (153)
395 PF12796 Ank_2: Ankyrin repeat 35.3 1.1E+02 0.0024 18.8 5.2 40 70-113 32-73 (89)
396 KOG0276 Vesicle coat complex C 35.1 3.5E+02 0.0076 24.6 9.6 99 14-124 596-694 (794)
397 COG4259 Uncharacterized protei 34.8 1.3E+02 0.0028 20.0 4.5 28 192-221 80-107 (121)
398 PF03745 DUF309: Domain of unk 34.5 1E+02 0.0022 18.2 3.9 50 193-242 8-62 (62)
399 PF01475 FUR: Ferric uptake re 34.2 1E+02 0.0022 20.7 4.4 24 102-125 13-36 (120)
400 KOG2659 LisH motif-containing 34.2 2.2E+02 0.0048 22.0 11.5 79 57-138 22-105 (228)
401 PRK14956 DNA polymerase III su 34.1 2.2E+02 0.0048 24.9 7.1 37 62-98 249-285 (484)
402 KOG4648 Uncharacterized conser 33.8 51 0.0011 27.3 3.1 46 70-117 106-152 (536)
403 cd08317 Death_ank Death domain 33.3 1.2E+02 0.0027 18.9 4.9 40 200-241 44-83 (84)
404 PF09435 DUF2015: Fungal prote 33.0 1.2E+02 0.0026 21.0 4.4 32 81-131 88-121 (128)
405 PF07163 Pex26: Pex26 protein; 33.0 2.6E+02 0.0057 22.6 8.3 60 183-242 117-181 (309)
406 COG5108 RPO41 Mitochondrial DN 32.8 2E+02 0.0044 26.3 6.7 73 66-138 33-109 (1117)
407 COG2976 Uncharacterized protei 32.5 2.1E+02 0.0045 21.7 5.8 55 192-248 134-188 (207)
408 PF14649 Spatacsin_C: Spatacsi 32.4 2.7E+02 0.0059 22.6 7.4 66 184-249 20-89 (296)
409 smart00544 MA3 Domain in DAP-5 31.7 1.5E+02 0.0033 19.5 6.0 49 165-213 14-66 (113)
410 smart00164 TBC Domain in Tre-2 31.3 1.7E+02 0.0037 21.5 5.6 71 19-91 108-197 (199)
411 PF14840 DNA_pol3_delt_C: Proc 31.0 35 0.00076 23.5 1.6 27 74-100 10-36 (125)
412 PF02885 Glycos_trans_3N: Glyc 31.0 1.2E+02 0.0026 18.0 6.1 61 188-249 3-65 (66)
413 PF09670 Cas_Cas02710: CRISPR- 31.0 1.8E+02 0.0039 24.5 6.1 54 70-124 140-197 (379)
414 PF12926 MOZART2: Mitotic-spin 30.9 1.5E+02 0.0032 19.0 7.8 47 43-90 26-72 (88)
415 PF13934 ELYS: Nuclear pore co 30.8 2.5E+02 0.0054 21.6 7.8 21 189-209 113-133 (226)
416 PF11207 DUF2989: Protein of u 30.5 2.4E+02 0.0053 21.4 12.1 64 176-239 132-198 (203)
417 PF08780 NTase_sub_bind: Nucle 30.5 97 0.0021 21.3 3.8 43 46-88 63-108 (124)
418 COG2987 HutU Urocanate hydrata 30.3 72 0.0016 27.4 3.5 58 17-75 216-278 (561)
419 COG3294 HD supefamily hydrolas 30.2 84 0.0018 24.3 3.6 21 42-62 66-86 (269)
420 TIGR01228 hutU urocanate hydra 30.2 72 0.0016 27.7 3.5 65 18-83 208-278 (545)
421 smart00843 Ftsk_gamma This dom 30.1 1.1E+02 0.0023 18.3 3.3 28 65-93 22-49 (63)
422 cd01670 Death Death Domain: a 30.1 1.3E+02 0.0028 18.2 4.6 40 200-241 38-77 (79)
423 cd08780 Death_TRADD Death Doma 29.8 1.6E+02 0.0034 19.0 6.7 55 185-242 33-88 (90)
424 PF06957 COPI_C: Coatomer (COP 29.8 3.6E+02 0.0079 23.2 7.9 125 13-151 213-348 (422)
425 cd08779 Death_PIDD Death Domai 29.8 1.4E+02 0.003 18.9 4.2 42 200-242 42-83 (86)
426 PF03943 TAP_C: TAP C-terminal 29.7 32 0.00069 19.4 1.1 22 110-131 27-48 (51)
427 KOG2908 26S proteasome regulat 29.7 3.3E+02 0.0072 22.7 14.8 75 63-138 77-162 (380)
428 PF14840 DNA_pol3_delt_C: Proc 29.3 69 0.0015 22.1 2.9 29 109-138 10-38 (125)
429 COG2987 HutU Urocanate hydrata 29.3 82 0.0018 27.0 3.7 64 42-118 219-287 (561)
430 PF14744 WASH-7_mid: WASH comp 29.3 3.4E+02 0.0073 22.6 9.4 45 199-245 281-325 (350)
431 PF04090 RNA_pol_I_TF: RNA pol 29.2 2.5E+02 0.0055 21.2 6.7 61 185-246 42-103 (199)
432 PRK03971 putative deoxyhypusin 28.9 59 0.0013 26.8 2.8 62 184-249 28-93 (334)
433 PF09397 Ftsk_gamma: Ftsk gamm 28.9 1.3E+02 0.0029 18.0 3.7 28 65-93 23-50 (65)
434 TIGR03581 EF_0839 conserved hy 28.9 1.5E+02 0.0033 22.7 4.7 82 42-123 137-235 (236)
435 KOG1130 Predicted G-alpha GTPa 28.4 3.9E+02 0.0084 23.1 10.1 48 71-119 27-78 (639)
436 PF02259 FAT: FAT domain; Int 27.9 3.3E+02 0.0071 22.0 7.5 30 95-124 145-174 (352)
437 cd08784 Death_DRs Death Domain 27.5 1.6E+02 0.0034 18.3 4.5 39 200-240 39-77 (79)
438 PF10963 DUF2765: Protein of u 27.4 1.1E+02 0.0024 19.4 3.2 30 57-86 12-41 (83)
439 COG4785 NlpI Lipoprotein NlpI, 27.4 3E+02 0.0065 21.5 9.9 167 71-249 75-267 (297)
440 COG2909 MalT ATP-dependent tra 27.4 5.5E+02 0.012 24.5 19.6 84 42-125 431-526 (894)
441 PRK05414 urocanate hydratase; 27.3 91 0.002 27.2 3.7 57 18-75 217-278 (556)
442 KOG0890 Protein kinase of the 27.3 2.5E+02 0.0055 29.8 7.0 112 9-131 1363-1481(2382)
443 PF02847 MA3: MA3 domain; Int 27.2 1.9E+02 0.004 19.0 5.9 62 65-129 6-69 (113)
444 PF11838 ERAP1_C: ERAP1-like C 27.0 3.3E+02 0.0072 21.8 10.6 87 42-131 146-236 (324)
445 PF08542 Rep_fac_C: Replicatio 26.9 1.1E+02 0.0023 19.2 3.4 32 63-95 7-38 (89)
446 KOG2396 HAT (Half-A-TPR) repea 26.9 4.5E+02 0.0097 23.3 8.4 80 42-123 87-167 (568)
447 PF10255 Paf67: RNA polymerase 26.8 2E+02 0.0044 24.5 5.6 61 186-246 124-191 (404)
448 COG5210 GTPase-activating prot 26.7 1.8E+02 0.0039 25.5 5.6 55 80-135 361-415 (496)
449 PF06552 TOM20_plant: Plant sp 26.6 2.7E+02 0.006 20.7 7.0 44 42-93 96-139 (186)
450 cd01041 Rubrerythrin Rubreryth 26.6 2.2E+02 0.0047 19.6 6.2 67 42-119 47-113 (134)
451 PF14786 Death_2: Tube Death d 25.9 2.4E+02 0.0052 19.8 6.9 61 185-245 56-117 (137)
452 KOG1130 Predicted G-alpha GTPa 25.6 3.5E+02 0.0077 23.3 6.6 81 42-122 171-261 (639)
453 cd08304 DD_superfamily The Dea 25.3 1.6E+02 0.0035 17.7 3.8 34 202-239 34-67 (69)
454 cd08790 DED_DEDD Death Effecto 25.2 1.2E+02 0.0025 19.9 3.1 18 75-92 38-55 (97)
455 smart00540 LEM in nuclear memb 25.2 77 0.0017 17.3 2.0 19 81-99 9-27 (44)
456 KOG2396 HAT (Half-A-TPR) repea 25.0 4.9E+02 0.011 23.1 13.2 71 79-150 89-167 (568)
457 KOG1585 Protein required for f 24.9 3.6E+02 0.0078 21.5 10.2 58 187-244 153-215 (308)
458 KOG0624 dsRNA-activated protei 24.6 4.2E+02 0.0092 22.3 18.9 190 42-243 54-247 (504)
459 COG2231 Uncharacterized protei 24.6 2.9E+02 0.0063 21.1 5.5 21 13-33 38-58 (215)
460 PF09477 Type_III_YscG: Bacter 24.5 2.3E+02 0.005 19.1 7.6 57 187-249 43-99 (116)
461 PF01916 DS: Deoxyhypusine syn 24.5 34 0.00074 27.6 0.8 56 190-249 4-64 (299)
462 PF11491 DUF3213: Protein of u 24.2 15 0.00032 23.1 -1.0 22 56-77 19-40 (88)
463 PF15469 Sec5: Exocyst complex 23.8 3E+02 0.0064 20.1 9.7 81 63-149 59-140 (182)
464 PF01175 Urocanase: Urocanase; 23.5 89 0.0019 27.3 3.0 19 165-183 359-377 (546)
465 PF08564 CDC37_C: Cdc37 C term 23.5 91 0.002 20.5 2.5 16 42-57 49-64 (99)
466 PF04034 DUF367: Domain of unk 23.4 2.3E+02 0.0051 19.6 4.5 59 185-246 67-126 (127)
467 PF14744 WASH-7_mid: WASH comp 23.4 1.5E+02 0.0033 24.5 4.2 27 111-138 281-307 (350)
468 smart00165 UBA Ubiquitin assoc 23.2 1.2E+02 0.0025 15.3 4.1 12 49-60 5-16 (37)
469 PF15297 CKAP2_C: Cytoskeleton 23.2 4.5E+02 0.0096 22.0 7.7 47 184-230 140-186 (353)
470 KOG1166 Mitotic checkpoint ser 22.9 4.4E+02 0.0096 25.5 7.5 60 73-133 90-150 (974)
471 PRK15180 Vi polysaccharide bio 22.9 5.4E+02 0.012 22.8 9.2 81 165-246 335-418 (831)
472 PF07304 SRA1: Steroid recepto 22.8 1.3E+02 0.0027 21.8 3.3 41 84-124 78-118 (157)
473 PF04190 DUF410: Protein of un 22.6 3.9E+02 0.0084 21.1 9.1 104 16-119 2-113 (260)
474 PF10255 Paf67: RNA polymerase 22.6 4.9E+02 0.011 22.3 8.4 60 64-123 125-191 (404)
475 KOG2214 Predicted esterase of 22.3 3.5E+02 0.0075 23.9 6.1 153 47-218 191-349 (543)
476 TIGR01228 hutU urocanate hydra 22.1 1.4E+02 0.0031 26.0 3.9 65 42-119 210-279 (545)
477 PRK14962 DNA polymerase III su 22.0 3.9E+02 0.0084 23.4 6.6 38 73-110 255-292 (472)
478 KOG1920 IkappaB kinase complex 22.0 8E+02 0.017 24.4 15.3 23 189-211 1004-1026(1265)
479 COG5159 RPN6 26S proteasome re 21.8 4.5E+02 0.0097 21.5 9.5 21 189-209 130-150 (421)
480 cd04445 DEP_PLEK1 DEP (Disheve 21.8 2.5E+02 0.0053 18.5 4.6 57 69-125 4-63 (99)
481 PRK02492 deoxyhypusine synthas 21.6 1.1E+02 0.0024 25.3 3.2 58 185-249 24-85 (347)
482 PF05944 Phage_term_smal: Phag 21.5 3E+02 0.0064 19.3 5.0 32 185-216 49-80 (132)
483 PRK05414 urocanate hydratase; 21.4 1.5E+02 0.0032 26.1 3.8 65 42-119 219-288 (556)
484 PF10155 DUF2363: Uncharacteri 21.4 2.9E+02 0.0062 19.1 8.4 106 11-123 9-125 (126)
485 PF02840 Prp18: Prp18 domain; 21.4 2.1E+02 0.0046 20.3 4.1 42 47-88 45-86 (144)
486 cd08316 Death_FAS_TNFRSF6 Deat 21.3 2.5E+02 0.0054 18.4 5.5 24 221-244 68-91 (97)
487 KOG1941 Acetylcholine receptor 21.2 5.2E+02 0.011 22.0 8.1 128 66-201 127-287 (518)
488 KOG0292 Vesicle coat complex C 21.1 7.5E+02 0.016 23.9 9.6 114 14-132 1001-1119(1202)
489 cd08819 CARD_MDA5_2 Caspase ac 21.1 2.4E+02 0.0052 18.1 6.6 65 45-115 21-85 (88)
490 PLN02428 lipoic acid synthase 21.1 3.1E+02 0.0066 22.9 5.6 48 74-125 227-274 (349)
491 KOG4567 GTPase-activating prot 21.0 2.6E+02 0.0057 22.9 4.9 44 204-247 263-306 (370)
492 PF00244 14-3-3: 14-3-3 protei 20.9 4E+02 0.0088 20.6 11.9 58 66-123 6-64 (236)
493 KOG2610 Uncharacterized conser 20.9 5.1E+02 0.011 21.8 9.8 81 42-124 119-203 (491)
494 COG1899 DYS1 Deoxyhypusine syn 20.8 1.1E+02 0.0024 24.9 2.8 31 184-214 19-54 (318)
495 cd06116 CaCS_like Chloroflexus 20.8 5.2E+02 0.011 21.9 9.0 18 90-107 315-332 (384)
496 PRK02301 putative deoxyhypusin 20.7 1.2E+02 0.0026 24.8 3.1 59 184-249 22-84 (316)
497 TIGR02328 conserved hypothetic 20.7 94 0.002 21.0 2.1 19 79-97 53-71 (120)
498 PF11740 KfrA_N: Plasmid repli 20.7 2.7E+02 0.0059 18.6 4.8 44 78-125 4-47 (120)
499 COG5210 GTPase-activating prot 20.6 2.6E+02 0.0055 24.5 5.4 61 42-102 358-418 (496)
500 PRK10292 hypothetical protein; 20.4 2.1E+02 0.0045 17.1 5.0 37 209-245 24-60 (69)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-42 Score=305.97 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=147.6
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh--hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG 75 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g 75 (250)
++|++|++.|++++|.++|++|.+. .|+..+|+ +++|.++|++|.+.|+.||..|||.||.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 6667777777777777777777655 45666666 6666666666666666666666666666666666
Q ss_pred ChhhHHHHHHHHHh--cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHH
Q 037164 76 NREKIDALMLEMEE--KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMT 144 (250)
Q Consensus 76 ~~~~a~~~~~~m~~--~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~ 144 (250)
++++|.++|++|.. .|+.||..||++||.+|++.|++++|.++|++|... |+.|+..+|+.+ +++|.+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 66666666666654 456666666666666666666666666666666666 666666666666 566666
Q ss_pred HHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhcc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 145 MLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQT----RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 145 ~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
+|++|. .+..|+.. +|+ +.+++++++++++.+ ..|+..+|+++|.+|++.|++++|.++|++|..
T Consensus 636 lf~eM~~~Gv~PD~~---TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 636 IYDDMKKKGVKPDEV---FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666666 44445443 554 344444444443332 125555666666666666666666666666655
Q ss_pred CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.|+.||..+||+||.+|++.|++++|.++|++|.+.|
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 5556666666666666666666666666666655554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.5e-41 Score=301.68 Aligned_cols=246 Identities=14% Similarity=0.064 Sum_probs=226.5
Q ss_pred CCcCCCcc------chhhHhhhccChhHHHHHHHHhhhh--hccccccc-----------hhHHHHHHHHHHH--CCCCc
Q 037164 1 MTDKLYIP------SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-----------VGKAEMVVQEMKD--MGFAR 59 (250)
Q Consensus 1 m~~~~~~p------~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-----------~~~A~~~~~~m~~--~~~~p 59 (250)
|.+.+..| ++|++|++.|++++|.++|+.|... .|+..+|+ +++|.++|++|.+ .|+.|
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 34455556 8999999999999999999999877 68888998 8999999999976 67999
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL- 138 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l- 138 (250)
|..+||+||.+|++.|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|... |+.||..||+.+
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI 656 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALV 656 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred --------HHHHHHHHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhcc----CCCChhhHHHHHHHHHhcC
Q 037164 139 --------LYMAMTMLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQT----RKVFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 139 --------~~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 198 (250)
+++|.+++++|. .+..|+.. +|+ +.++++++.++++++ ..|+..+||+||.+|++.|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~---tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTV---SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999 56666655 777 777777777777665 3499999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
++++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999884
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-38 Score=281.89 Aligned_cols=230 Identities=11% Similarity=0.043 Sum_probs=205.8
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCcc-----------------
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARR----------------- 60 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~----------------- 60 (250)
.+|++|+++|++++|.++|++|+. |+..+|+ .++|.++|++|.+.|+.||
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 888999999999999999999985 6888888 8889999999877766555
Q ss_pred ------------------HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 61 ------------------TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 61 ------------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
..+||+||.+|++.|++++|.++|++|.. +|..+||+||.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44567788889999999999999998864 58899999999999999999999999999
Q ss_pred hhCCCCCccHHHHHHH---------HHHHHHHHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChh
Q 037164 123 ESNPQMVLDFNLLAVL---------LYMAMTMLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNK 185 (250)
Q Consensus 123 ~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 185 (250)
... |+.||..||+.+ +++|.+++.+|. .+..++.. +|+ +.|.++++.+.++.+..+|..
T Consensus 317 ~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~---~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 317 RDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV---ANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred HHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee---ehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 988 999999999998 889999999999 55555554 555 889999999999999889999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+||+||.+|++.|+.++|.++|++|...|+.||..||++++.+|++.|.+++|.++|+.|.+.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-37 Score=278.30 Aligned_cols=230 Identities=10% Similarity=0.062 Sum_probs=204.7
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
++|++|+++|++++|.++|++|+. |+..+|+ .++|.++|++|.+.|+.||..||+++|.+|++.|++
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 899999999999999999999975 6788888 899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK 148 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~ 148 (250)
+.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|.. +|..+|+++ .++|..+|++
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864 345566666 5677777777
Q ss_pred HHhhhhccCCchhhhc------------------------------------------chhHHHHHHHHHhccCCCChhh
Q 037164 149 SEGLIATKRNSSNAFE------------------------------------------LKDQLYRIWKHYGQTRKVFNKG 186 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 186 (250)
|.....|+.. +|. +.|+++++++.+..+ .+|..+
T Consensus 481 m~~~~~pd~~---t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 481 MLLTLKPNSV---TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHhCCCCCHh---HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 7655555443 332 678889999999888 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH-hcC
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE-TKK 249 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g 249 (250)
||++|.+|++.|+.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|+.|. +.|
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999998 445
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.2e-36 Score=263.50 Aligned_cols=234 Identities=8% Similarity=0.056 Sum_probs=188.2
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
++|++|+|+|++++|.++|++|+. ++..+|+ .++|.++|++|.+.|+.||..||+++|.+|++.|++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 788888888888888888888875 4777777 788888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHhcCCC-------------------------------CCchhHhhhHHHHHhcCChhHHHHHHHHHhhCC
Q 037164 78 EKIDALMLEMEEKSIN-------------------------------GDQFTLGIRPSAYAAASDIHGMDKIINMTESNP 126 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~-------------------------------p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~ 126 (250)
++|.+++.+|.+.|+. ||..|||+||.+|++.|+.++|.++|++|...
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~- 420 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE- 420 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8888887777777755 45556666666666667777777777777777
Q ss_pred CCCccHHHHHHH---------HHHHHHHHHHHH--hhhhccCCchhhhc-------chhHHHHHHHHHhccCC-CChhhH
Q 037164 127 QMVLDFNLLAVL---------LYMAMTMLKKSE--GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK-VFNKGY 187 (250)
Q Consensus 127 g~~~~~~~~~~l---------~~~a~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~ 187 (250)
|+.||..||+.+ +++|.++|+.|. .+..|+.. +|+ +.|.++++.++++++.. |+..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~---~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM---HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc---chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 888888888888 788888888886 35666655 665 78888888888887755 888889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
++++.+|++.|+++.|..+++++.. ..| +..+|+.|+..|++.|++++|.++++.|.++|+
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999888888763 334 578999999999999999999999999999885
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-35 Score=267.90 Aligned_cols=232 Identities=13% Similarity=0.026 Sum_probs=180.2
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHH-------------
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYC------------- 64 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y------------- 64 (250)
++|++|++.|+++.|.++|++|++ |+..+|+ +++|.++|++|...|+.||..||
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 566666666666666666666664 4556666 56666666666666666655555
Q ss_pred ----------------------HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 65 ----------------------YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 65 ----------------------~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
|+||.+|++.|+++.|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5566666666777777777776653 56777777777777777778888888888
Q ss_pred hhCCCCCccHHHHHHH---------HHHHHHHHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChh
Q 037164 123 ESNPQMVLDFNLLAVL---------LYMAMTMLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNK 185 (250)
Q Consensus 123 ~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 185 (250)
... |+.||..||+.+ .+.+.+++..|. .+..|+.. +|+ +.+.++++.++++++..|+..
T Consensus 280 ~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~---~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 280 REL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS---VCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH---HHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 777 888888888888 677888888887 55555554 666 888889999999988889999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
+||++|.+|++.|++++|.++|++|...|+.||..||++++.+|++.|+++.|.++++.|.+.|.
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999899999999999999888888888888888888887763
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.70 E-value=3.3e-17 Score=94.80 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA 108 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~ 108 (250)
||+++||++|.+|++.|++++|.++|++|++.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.64 E-value=9e-14 Score=115.53 Aligned_cols=229 Identities=14% Similarity=-0.007 Sum_probs=147.0
Q ss_pred hhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhcCChh
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~ 78 (250)
+...|++++|...|.++....|+. ..+. .++|..+++.+.+.+..++ ..++..+...|.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 345678888888888877664432 2333 7788888888776532221 246777788888888888
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH----HHHHHH---------HHHHHHH
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF----NLLAVL---------LYMAMTM 145 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~----~~~~~l---------~~~a~~~ 145 (250)
+|.++|+++.+. -+++..+++.++..+.+.|++++|.++++.+... +-.+.. ..+..+ .++|...
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 888888887764 2345677888888888888888888888887654 222211 112222 6777777
Q ss_pred HHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164 146 LKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--VF--NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 216 (250)
|+++.... |..... ..|...++.+++.+.++.... |+ ..+++.+..+|.+.|+.++|...++++... .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776433 222211 011155566666666555432 22 245667777778888888888888777654 3
Q ss_pred CCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 217 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|+...+..+...+.+.|++++|..+++++.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555667777777778888888887777654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.62 E-value=1.4e-13 Score=114.31 Aligned_cols=236 Identities=11% Similarity=0.020 Sum_probs=177.4
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNY 72 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~ 72 (250)
.+...+.+.|++++|..+++.+....+.. ..+. .++|..+|+++.+. -+++..+++.++..|.
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 45567888999999999999887642211 1111 89999999999876 3467889999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------H
Q 037164 73 LTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------L 139 (250)
Q Consensus 73 ~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~ 139 (250)
+.|++++|.++++.+.+.+-.+. ...|..+...+.+.|++++|.+.++++... . +.+...+..+ .
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-D-PQCVRASILLGDLALAQGDY 230 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-C-cCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999987653332 124567778899999999999999998753 2 2223333333 8
Q ss_pred HHHHHHHHHHHhhhhccCCc-----hhhhcchhHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 140 YMAMTMLKKSEGLIATKRNS-----SNAFELKDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
++|.+.++++.......... ...|...++.+++.+.++.... |+...+..+...+.+.|++++|..+++++..
T Consensus 231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999988432211110 0022266777777777766533 6667778899999999999999999999875
Q ss_pred CCCCCCCcchHHHHHHHHh---cCChhHHHHHHHHHHhcC
Q 037164 213 KNLPYDFGLPSSLIDAHCK---NGLLEKAQSLINHAETKK 249 (250)
Q Consensus 213 ~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g 249 (250)
. .|+...++.++..+.. .|+.+++..++++|.+++
T Consensus 311 ~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 311 R--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred h--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 6888899999988775 569999999999998765
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.60 E-value=3.5e-13 Score=122.59 Aligned_cols=196 Identities=11% Similarity=-0.040 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|.++++.+.+.+ +++..++..+...+.+.|++++|.+.++.+.+. .|+..++..+..++.+.|++++|.+.+++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444444444444432 334445555555555555555555555555443 23445555556666666666666666666
Q ss_pred HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC---C
Q 037164 122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK---V 182 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~ 182 (250)
+... .+.+...+..+ .++|...|+++.... |... . .+. ..++ .++.+.++.... .
T Consensus 762 ~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~-~-~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 762 WLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA-V-VLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 5442 22333333333 677777777776443 2222 1 222 3333 445555544322 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+..++..+...+...|++++|..+|+++...+.. +..++..+..+|.+.|++++|.+++++|++
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 3466777888899999999999999999976543 889999999999999999999999999863
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.9e-13 Score=108.05 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=93.4
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh--hccccccc-------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
++|-++||--..|.|..++.+-... .....+|| .....++..+|....+.||..|||+++.+.++.|+++.
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ 291 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFED 291 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHH
Confidence 7888999999999999999887665 33344555 45557888999988899999999999999999998864
Q ss_pred ----HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhH-HHHHHHHHhh
Q 037164 80 ----IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG-MDKIINMTES 124 (250)
Q Consensus 80 ----a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~-a~~~~~~m~~ 124 (250)
|.+++.+|++-|+.|+..+|..+|..+++-++..+ |..++.++.+
T Consensus 292 ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 292 ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 57888899999999999999999999999888644 5555555543
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.8e-13 Score=107.40 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhH----HHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG----MDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~----a~~ 117 (250)
++.|.+++++-.+...+.+..+||.+|.+-+-..+ .++..+|.+..+.||..|+|+++++.++.|+++. |.+
T Consensus 223 ~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalq 298 (625)
T KOG4422|consen 223 LERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQ 298 (625)
T ss_pred HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 89999999999988889999999999988654333 8999999999999999999999999999998765 578
Q ss_pred HHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHH-----hhhhccCCchhhhc-----------chhHHHH
Q 037164 118 IINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSE-----GLIATKRNSSNAFE-----------LKDQLYR 171 (250)
Q Consensus 118 ~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~~ 171 (250)
++.+|++- |++|...+|..+ ...+..++.+.. +...|..+.-+-|- +..-...
T Consensus 299 il~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~ 377 (625)
T KOG4422|consen 299 ILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQ 377 (625)
T ss_pred HHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHH
Confidence 89999999 999999999988 233444444333 33333333110111 3333444
Q ss_pred HHHHHhccCC-----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 172 IWKHYGQTRK-----V---FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 172 ~~~~~~~~~~-----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
+..+++.... + ...-|..+....|.....+.-..+|+.|.-.-..|+..+...++++..-.|+++-..++|.
T Consensus 378 v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~ 457 (625)
T KOG4422|consen 378 VHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWK 457 (625)
T ss_pred HHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHH
Confidence 4445544321 2 2345667888899999999999999999988889999999999999999999999999999
Q ss_pred HHHhcCC
Q 037164 244 HAETKKG 250 (250)
Q Consensus 244 ~m~~~g~ 250 (250)
+++..|+
T Consensus 458 D~~~~gh 464 (625)
T KOG4422|consen 458 DSKEYGH 464 (625)
T ss_pred HHHHhhh
Confidence 9998874
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.57 E-value=3.8e-15 Score=86.09 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK 231 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 231 (250)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999985
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=2.4e-12 Score=117.13 Aligned_cols=199 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|..+++++.+. .+.+..+|..+..+|.+.|++++|...++.+.+.+ +.+...+..+..++.+.|++++|.+++++
T Consensus 583 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555443 23344555555555555555555555555554431 22334455555555555555555555555
Q ss_pred HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164 122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF 183 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~ 183 (250)
+... .+.+..++..+ .++|.++++.+.... |... . .+. ..++.+++.+.++.... |+
T Consensus 661 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 661 ALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA-L-GFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh-H-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 4432 11122222222 455555555554322 1111 0 111 44555555555544322 44
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..++..+..++.+.|+.++|.+.++++... .+.+..+++.+...|...|++++|...|+++.+.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 455555666666666666666666666532 3445566666666666666666666666666543
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=7.9e-12 Score=99.34 Aligned_cols=230 Identities=16% Similarity=0.058 Sum_probs=83.8
Q ss_pred hHhhhccChhHHHHHHHH-hhhh-hccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 12 NLIFEVHGVEQAEIYFDN-ISKL-LRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~-~~~~-~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
.++.+.|++++|.++++. +... .|+...|- .+.|...++++...+-. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 466788999999999954 4443 23433332 89999999999887533 56778888888 799999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK 148 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~ 148 (250)
++|.+++...-++ .++...+..++..+.+.++++++.++++........+++...|... .++|...+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999876544 3677788889999999999999999999987653556666666655 8899999988
Q ss_pred HHhhhhccCCch-hhhc----chhHHHH---HHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164 149 SEGLIATKRNSS-NAFE----LKDQLYR---IWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220 (250)
Q Consensus 149 ~~~~~~~~~~~~-~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 220 (250)
..... |++... ..+. ..++..+ +++.+....+.+...+..+-.+|...|+.++|..+|++... ..+.|+.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-~~p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK-LNPDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-HSTT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc-ccccccc
Confidence 87554 333211 0111 4444444 55555555556667788999999999999999999999774 3555888
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+...+.+++...|+.++|.++..+..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 899999999999999999999887754
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.4e-10 Score=100.13 Aligned_cols=197 Identities=14% Similarity=0.062 Sum_probs=141.1
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC------------------------CCCCchhHhhh
Q 037164 47 MVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS------------------------INGDQFTLGIR 102 (250)
Q Consensus 47 ~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------i~p~~~ty~~l 102 (250)
.++..+...|+.||.+||..+|.-||..|+.+.|- +|..|+-.. =.|...||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 46778899999999999999999999999999998 888775221 25788899999
Q ss_pred HHHHHhcCChhHHHHHHH---HHhhC--------------------CCCCccHHHHHHH------HHHHHHHHHHHH--h
Q 037164 103 PSAYAAASDIHGMDKIIN---MTESN--------------------PQMVLDFNLLAVL------LYMAMTMLKKSE--G 151 (250)
Q Consensus 103 i~~~~~~~~~~~a~~~~~---~m~~~--------------------~g~~~~~~~~~~l------~~~a~~~~~~~~--~ 151 (250)
+.+|...||+..-..+=+ .+... ++.-||..+-.-+ .+.+.+++..+- .
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999999765333322 22111 2223333332222 222222222221 1
Q ss_pred hhhccCCchhhhc----chhHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHH
Q 037164 152 LIATKRNSSNAFE----LKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI 226 (250)
Q Consensus 152 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 226 (250)
...|... ... ....++++....+.... ++..+|.+++++-.-.|+++.|..++.+|+.+|++.+..-|-.|+
T Consensus 170 ~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 170 WNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred ccchHHH---HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 1111000 011 44456666666666555 899999999999999999999999999999999999999998988
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 037164 227 DAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
-+ .++..-++.++.-|.+.||
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv 267 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGV 267 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcC
Confidence 77 8899999999999999886
No 17
>PF12854 PPR_1: PPR repeat
Probab=99.23 E-value=1.3e-11 Score=64.58 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=17.3
Q ss_pred CCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164 56 GFARRTIYCYIMMILNYLTGNREKIDALMLEM 87 (250)
Q Consensus 56 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 87 (250)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 18
>PF12854 PPR_1: PPR repeat
Probab=99.23 E-value=1.1e-11 Score=64.83 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=32.4
Q ss_pred cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 90 KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 90 ~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999984
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.17 E-value=1.4e-08 Score=89.80 Aligned_cols=109 Identities=3% Similarity=-0.155 Sum_probs=57.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
+....|++++|...|+.+....|+.. .+. .++|...|++..+.. +.+...+..+..++...|++++|
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH
Confidence 33446777777777776666533322 222 666666666666541 33455566666666666666666
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
...++.+....-. +...+..+ ..+.+.|++++|...++.+..
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 6666655433111 11222222 234555666666655555433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.16 E-value=3.7e-08 Score=87.12 Aligned_cols=229 Identities=8% Similarity=-0.085 Sum_probs=126.2
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
-.++.+.|++++|...|+......|+.. .+. .++|...++.+.... +.+...+..+ ..+.+.|+++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHH
Confidence 3456667777777777777666533322 222 567777777665542 1222233222 3366677777
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HH----HHHHH
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LY----MAMTM 145 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~----~a~~~ 145 (250)
+|..+++.+.+..-.++...+..+...+.+.|++++|...+++.... -+.+...+..+ .+ +|...
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 77777777655432333444444556677777777777777776543 11222222222 23 35666
Q ss_pred HHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 146 LKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
+++..... |+... .+. ..++.+++...++.... |+ ...+..+...+.+.|++++|...|+.+...
T Consensus 273 ~~~Al~l~-P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 273 WRHALQFN-SDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHhhC-CCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 66655332 33221 221 44555555555544322 33 345556667777777777777777776643
Q ss_pred CCCC-cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 216 PYDF-GLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 216 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.|+. ..+..+..++...|+.++|...|++..+.
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2332 22333455677777777777777776553
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.12 E-value=3.8e-08 Score=86.80 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=155.7
Q ss_pred hhccChhHHHHHHHHhhhhh---cc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 15 FEVHGVEQAEIYFDNISKLL---RQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~~---~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
...+++++|.+.|+...... |+ ...|. .++|...|++..+.. +-+..+|..+..++...|++++
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 34578999999998876531 21 11222 889999999988753 2336688888888999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHH
Q 037164 80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE 150 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~ 150 (250)
|...|++..+.. +.+..+|..+...+...|++++|.+.|++.... .+.+...+..+ +++|...+++..
T Consensus 384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999876652 235678888889999999999999999988753 22233333333 788888888877
Q ss_pred hhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CCh-hh-------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 151 GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VFN-KG-------YMTMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 151 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~-~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
... |.... .|. ..++.+++.+.++.... |+. .. ++.....+...|++++|..++++....
T Consensus 461 ~~~-P~~~~--~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 461 KNF-PEAPD--VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HhC-CCChH--HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 543 33331 332 66666677666655322 211 11 122222344469999999999997754
Q ss_pred CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
. +.+...+..+...+.+.|++++|...|++..+
T Consensus 538 ~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 538 D-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 33445688999999999999999999998764
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.08 E-value=7.3e-08 Score=85.00 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=89.6
Q ss_pred hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc---
Q 037164 98 TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE--- 164 (250)
Q Consensus 98 ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~--- 164 (250)
.|+.+-..+...|++++|...+++.... .|+ ...|..+ +++|...|++..... |.... .|.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~--~~~~lg 406 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD--IYYHRA 406 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH--HHHHHH
Confidence 4555555666667777777777766532 222 2222222 666777777665332 33321 222
Q ss_pred ----chhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhH
Q 037164 165 ----LKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEK 237 (250)
Q Consensus 165 ----~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 237 (250)
..++.+++...++.... | +...+..+-..+.+.|++++|+..|++.... .+.+...++.+...+...|++++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHH
Confidence 55666666666655422 3 3456666777888888888888888887642 34456778888888888888888
Q ss_pred HHHHHHHHHh
Q 037164 238 AQSLINHAET 247 (250)
Q Consensus 238 a~~~~~~m~~ 247 (250)
|...|++..+
T Consensus 486 A~~~~~~Al~ 495 (615)
T TIGR00990 486 AIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHh
Confidence 8888887664
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.07 E-value=1.9e-07 Score=78.24 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
...++-..+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++..
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3446667788888999999988864444567888888888888888999999988888753
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.03 E-value=1.1e-07 Score=79.31 Aligned_cols=223 Identities=12% Similarity=-0.020 Sum_probs=132.5
Q ss_pred ccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHH--HHHHHHhhcCChhhHHH
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCY--IMMILNYLTGNREKIDA 82 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~--~li~~~~~~g~~~~a~~ 82 (250)
.|+++.|++.+...+...+++..|. .+.|...+.++.+. .|+...+- .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3777777777776655433333333 67777788777664 35543332 22456777788888888
Q ss_pred HHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-ccHH------HHHHH-----------------
Q 037164 83 LMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV-LDFN------LLAVL----------------- 138 (250)
Q Consensus 83 ~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~------~~~~l----------------- 138 (250)
.+++..+.. +-+......+...|.+.|++++|.+++..+.+. +.. ++.. .|..+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 887776653 234556666778888888888888887777665 332 2211 11111
Q ss_pred --------------------------HHHHHHHHHHHHhhhhccCCchhhhc--chhHHHHHHHHHhccCC--CCh-hhH
Q 037164 139 --------------------------LYMAMTMLKKSEGLIATKRNSSNAFE--LKDQLYRIWKHYGQTRK--VFN-KGY 187 (250)
Q Consensus 139 --------------------------~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~-~~~ 187 (250)
.++|.+++.+..+ ..++..-...|. ..++..+..+..+.... |+. ...
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~ 331 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW 331 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHH
Confidence 4444444444433 111111000122 23444444444443322 433 556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.++-..+.+.|++++|.+.|+...+ ..|+...+..|...+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677778888888888888887764 45777777788888888888888888777653
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.02 E-value=2e-07 Score=77.81 Aligned_cols=195 Identities=11% Similarity=-0.010 Sum_probs=144.7
Q ss_pred hhhccChhHHHHHHHHhhhhhccccccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCLFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
-.+.|+++.|.++|.++.+..|+...+. .++|...+++..+.+ +-+......+...|.+.|++++|
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 3678999999999999987766654221 899999999998875 55678899999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------------------------------------CchhHhhhHHHHHhcCChhHHHHHH
Q 037164 81 DALMLEMEEKSING-----------------------------------------DQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 81 ~~~~~~m~~~gi~p-----------------------------------------~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
.+++..+.+.+..+ ++.....+...+...|+.++|.+++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999888765432 2233445577888899999999999
Q ss_pred HHHhhCCCCCccH-HHHHHH----HHHHHHHHHHHHhhhhccCCch-hhhc----chhHHHHHHHHHhccCC--CChhhH
Q 037164 120 NMTESNPQMVLDF-NLLAVL----LYMAMTMLKKSEGLIATKRNSS-NAFE----LKDQLYRIWKHYGQTRK--VFNKGY 187 (250)
Q Consensus 120 ~~m~~~~g~~~~~-~~~~~l----~~~a~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~--~~~~~~ 187 (250)
++..+. .-.|.. ..|..+ .+++.+.++...+.. |++... .++. ..++..++.+.++.... |+...|
T Consensus 287 ~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~ 364 (398)
T PRK10747 287 LDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY 364 (398)
T ss_pred HHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence 988764 333332 244444 667777777766443 444421 0111 77777777777777644 888889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
..+-..+.+.|+.++|.+++++-.
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999764
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=3.5e-07 Score=69.89 Aligned_cols=183 Identities=9% Similarity=-0.042 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.+ +.+...+..+...+...|++++|.+.+++
T Consensus 47 ~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 47 LEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQ 124 (234)
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 677777777776542 3456777888888888899999888888776653 33456777778888888899999888888
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcC
Q 037164 122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g 198 (250)
....+........+..+ + . .+...++..++.+.+... .+.+...+..+...+...|
T Consensus 125 ~~~~~~~~~~~~~~~~l---~-----------------~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 125 AIEDPLYPQPARSLENA---G-----------------L-CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHhccccccchHHHHHH---H-----------------H-HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 76541111111222111 0 0 111222233333333222 1223456778889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+.++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998865 4456677778888999999999999998887653
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=7.9e-08 Score=81.17 Aligned_cols=224 Identities=11% Similarity=0.011 Sum_probs=150.4
Q ss_pred HhhhccChhHHHHHHHHhhhhhc----cccccc-------hhHHHHHHHH-HHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLR----QCLFFG-------VGKAEMVVQE-MKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~----~~~~y~-------~~~A~~~~~~-m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
+|...+++++|+++|+.+....| +...|. -+-++.++.+ +.+. -+-.+.+|-++-++|+-.++.+.|
T Consensus 362 ayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~A 440 (638)
T KOG1126|consen 362 AYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTA 440 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHH
Confidence 56777888888888888877632 333444 1222333322 2221 234567888888888888888888
Q ss_pred HHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------------HHHHHHHHH
Q 037164 81 DALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------------LYMAMTMLK 147 (250)
Q Consensus 81 ~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------------~~~a~~~~~ 147 (250)
++.|++-.+ +.| ...+|+.+-+-+.....+|.|...|+.... .|+-.|++. .+.|+-.|+
T Consensus 441 ik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 441 IKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred HHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 888885444 555 667888887888888888888888876653 355566666 666666666
Q ss_pred HHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 037164 148 KSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219 (250)
Q Consensus 148 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 219 (250)
+...-. |..... ..+...+..+++++++++... .++..--.....+...++.++|...+++++. -++-+.
T Consensus 514 kA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es 591 (638)
T KOG1126|consen 514 KAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE-LVPQES 591 (638)
T ss_pred hhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH-hCcchH
Confidence 665433 332211 011277888888888877654 4445555666777888889999999988873 345567
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 220 GLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 220 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.+|..|...|.+.|+.+.|..-|.-+.
T Consensus 592 ~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 592 SVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 778888888888898888877665544
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.91 E-value=5.3e-07 Score=84.94 Aligned_cols=109 Identities=11% Similarity=-0.029 Sum_probs=71.1
Q ss_pred HhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHH--------------
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYI-------------- 66 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~-------------- 66 (250)
.+.+.|++++|...|++.....|+. ..+. .++|++.|++..+.. +.+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHH
Confidence 3456677777777777766653332 2221 677777777766542 222333322
Q ss_pred ----------------------------HHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHH
Q 037164 67 ----------------------------MMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 67 ----------------------------li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
+...+...|++++|.+.+++..+. .| +...+..+...|.+.|++++|..
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 334455678888888888877654 34 45667778888999999999999
Q ss_pred HHHHHhh
Q 037164 118 IINMTES 124 (250)
Q Consensus 118 ~~~~m~~ 124 (250)
.++++..
T Consensus 517 ~l~~al~ 523 (1157)
T PRK11447 517 LMRRLAQ 523 (1157)
T ss_pred HHHHHHH
Confidence 9998765
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.91 E-value=1.5e-06 Score=78.11 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHhccCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCCcchHHHHHHHHhcCCh
Q 037164 165 LKDQLYRIWKHYGQTRK----VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-----LPYDFGLPSSLIDAHCKNGLL 235 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~ 235 (250)
..+...++.+.++.+.. .....--.+.++|...++.++|+.+|+...... .+++......|.-+|..++++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 44445555555544432 234555677888999999999999998876432 122333357788899999999
Q ss_pred hHHHHHHHHHHh
Q 037164 236 EKAQSLINHAET 247 (250)
Q Consensus 236 ~~a~~~~~~m~~ 247 (250)
++|..+++++.+
T Consensus 384 ~~A~~~l~~~~~ 395 (822)
T PRK14574 384 DKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHHHh
Confidence 999999988876
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=2.6e-07 Score=78.17 Aligned_cols=221 Identities=7% Similarity=-0.044 Sum_probs=149.0
Q ss_pred hhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--------
Q 037164 20 VEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS-------- 91 (250)
Q Consensus 20 ~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-------- 91 (250)
...-..++..+-+.......|+.++|...|.+..+. +.-+..+-.-+-.+|-..+++++|+++|+..++..
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me 391 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME 391 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Confidence 333344444444444555666677777777775443 22222344455566777777777777777665321
Q ss_pred -------------------------CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHH-------
Q 037164 92 -------------------------INGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVL------- 138 (250)
Q Consensus 92 -------------------------i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l------- 138 (250)
-+-.+.||.++-++|.-.++.+.|+++|++..+ +.| ..++|+.+
T Consensus 392 iyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ 468 (638)
T KOG1126|consen 392 IYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIAT 468 (638)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhh
Confidence 133568999999999999999999999998874 455 57888877
Q ss_pred --HHHHHHHHHHHHhhhhccCCchhhhc------chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164 139 --LYMAMTMLKKSEGLIATKRNSSNAFE------LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTL 207 (250)
Q Consensus 139 --~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 207 (250)
+++|...|+...... |+..+. .|. +.+..+.+.-.++.... .+.+....+...+-+.|+.|+|++++
T Consensus 469 ee~d~a~~~fr~Al~~~-~rhYnA-wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVD-PRHYNA-WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHHHhHHHHHHhhhcCC-chhhHH-HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 788888888776332 111111 222 77777777666665543 44477777788899999999999999
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 208 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
++....... |+-.----...+...++.++|...++++++
T Consensus 547 ~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 547 EKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 998754332 334434455667778899999999999875
No 31
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.87 E-value=3.5e-09 Score=55.86 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ 96 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~ 96 (250)
.+||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888874
No 32
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.81 E-value=8e-09 Score=54.16 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSING 94 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p 94 (250)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.78 E-value=5.5e-07 Score=76.02 Aligned_cols=195 Identities=10% Similarity=-0.025 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
+++|...+.+..+.. +--++.|+.|-..+-..|+...|...|.+-. .+.|+- ..|-.|-..|...+.+++|...+.
T Consensus 200 l~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--KLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred cchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhh--cCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 445555555544431 1123556666666666666666666666432 344543 456666666666666676666666
Q ss_pred HHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--
Q 037164 121 MTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK-- 181 (250)
Q Consensus 121 ~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-- 181 (250)
.... ..|+ ...+..+ ++-|++.+++..... |.-.+ .|+ ..|++.++...+.....
T Consensus 277 rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~--Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 277 RALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD--AYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH--HHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 6543 2232 3334333 666777776665433 22221 444 55666666666655422
Q ss_pred CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 182 VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 182 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|+. ...+.|-..|...|+++.|..+|..... +.|. ...+|-|-..|-+.|++++|...+++.++
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 332 5667777777777777777777776553 3333 45577777777778888888777777654
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=98.77 E-value=2.4e-06 Score=74.44 Aligned_cols=78 Identities=9% Similarity=-0.109 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
++|...+++..+.+ +-+..++..+-..+...|++++|...+++..+. .|+ ...|..+-..+...|++++|...+++
T Consensus 321 ~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 321 IKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555442 234445555555555555555555555554443 232 33444455555555555555555555
Q ss_pred Hh
Q 037164 122 TE 123 (250)
Q Consensus 122 m~ 123 (250)
..
T Consensus 398 Al 399 (553)
T PRK12370 398 CL 399 (553)
T ss_pred HH
Confidence 44
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.77 E-value=3.6e-06 Score=77.28 Aligned_cols=195 Identities=14% Similarity=0.032 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|.+.... .|+......+...+...|++++|...++.+... .|+...+..+...+.+.|++++|.+.+++
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56677766666554 255444333444446778888888887765433 45555566666777777888888888877
Q ss_pred HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164 122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF 183 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~ 183 (250)
.... . +.+...+..+ .++|...+.+..... |+.. .|. +.++.+++...++.... |+
T Consensus 568 AL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~~~---a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 568 AEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PSAN---AYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 7654 2 2222222222 566677766665333 2211 222 56666666666655433 44
Q ss_pred h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 184 N-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 184 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
. ..++.+-..+...|+.++|...|++.... .+-+...+..+-.++...|++++|...+++..+
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 66677777889999999999999988743 345677888999999999999999999988765
No 36
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-07 Score=77.24 Aligned_cols=197 Identities=10% Similarity=-0.012 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARR-TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
+++|...+.+.... .|+ ++.|..|-..|...|+.+.|...+++..+ ++|+- ..||.|-.++-..|++.+|++++
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 44444444444332 222 34444455555555555555555554333 33432 45666666666666666666666
Q ss_pred HHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCC----chhhhcchhHHHHHHHHHhccCC--CCh
Q 037164 120 NMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRN----SSNAFELKDQLYRIWKHYGQTRK--VFN 184 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~ 184 (250)
++...- .+...-..+.+ +++|..++.....-...... -...|.+.|.++++...+++... |+.
T Consensus 344 nkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 344 NKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 655432 11111111111 44444444443321111110 00033355666666666655433 333
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 -KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..|+.+-..|-..|+++.|...+.+... +.| =...++-|-..|-.+|++.+|.+-++..+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 5566666666666666666666666553 222 24455666666666666666666665544
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.75 E-value=5.3e-06 Score=78.37 Aligned_cols=231 Identities=8% Similarity=-0.051 Sum_probs=152.8
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
..+...|++++|.+.|++.....|+.. .+. .++|...|++..+.. +.+...+..+...+...+++++
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence 345678999999999999887755532 211 899999999987753 3345555555556778899999
Q ss_pred HHHHHHHHHhcCCCCCch---------hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHH
Q 037164 80 IDALMLEMEEKSINGDQF---------TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMT 144 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~---------ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~ 144 (250)
|...++.+......++.. .+..+...+...|+.++|.++++. .+.-.........+ .++|.+
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 999988764433333221 123456778889999999999872 21221111222222 888898
Q ss_pred HHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164 145 MLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216 (250)
Q Consensus 145 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 216 (250)
.|++..... |..... ..|...++..++.+.++.... | +...+..+-.++...|+.++|..++++.......
T Consensus 625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 888887543 333321 011155666677666665433 3 3355667778889999999999999998754322
Q ss_pred --C---CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 217 --Y---DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 217 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
| +..++..+...+...|++++|...+++.+.
T Consensus 704 ~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 704 QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 123455557778899999999999998864
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2.5e-06 Score=66.73 Aligned_cols=203 Identities=14% Similarity=0.043 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch------hHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF------TLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~------ty~~li~~~~~~~~~~~a 115 (250)
.++|.++|-+|.+.+ +-+..+--+|-+.|-+.|..|+|+++.+.+.++ ||.. ..--|-.=|..+|-+|.|
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 899999999998852 333445567888999999999999999998776 4432 233456778889999999
Q ss_pred HHHHHHHhhCCCCCccH-HHHHHH------HHHHHHHHHHHHhhhhc-cCCch-hhhc-------chhHHHHHHHHHhcc
Q 037164 116 DKIINMTESNPQMVLDF-NLLAVL------LYMAMTMLKKSEGLIAT-KRNSS-NAFE-------LKDQLYRIWKHYGQT 179 (250)
Q Consensus 116 ~~~~~~m~~~~g~~~~~-~~~~~l------~~~a~~~~~~~~~~~~~-~~~~~-~~~~-------~~~~~~~~~~~~~~~ 179 (250)
+++|..+...+...+.. -....+ .++|+++-.++.+.... ..... ..|- ...+++++...++..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999997753444332 122222 77777777766633221 11100 0111 556677777777665
Q ss_pred CC--CChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 180 RK--VFNKGYMTMM-GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 180 ~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.. |+.+--++++ ......|++..|.+.|+...+.+...-..+...|..+|...|+.++...++.++.+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 43 4443334433 677889999999999999998777777788999999999999999999999888764
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.73 E-value=4.7e-06 Score=63.59 Aligned_cols=160 Identities=12% Similarity=-0.003 Sum_probs=117.0
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
.....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.... . +.+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL-N-PNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCHHHHHHH
Confidence 345778888999999999999999999887652 334677888889999999999999999988754 2 1222222222
Q ss_pred ---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037164 139 ---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209 (250)
Q Consensus 139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 209 (250)
+++|.+.+.+...... .+.....+..+...+...|+.++|...+.+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPL-------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccc-------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444432110 011234566677889999999999999999
Q ss_pred HHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 210 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.... .+.+...+..+...+...|++++|...+++..+
T Consensus 161 ~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 161 ALQI-DPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHh-CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8754 333567888999999999999999999998765
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.72 E-value=7.1e-06 Score=73.92 Aligned_cols=228 Identities=12% Similarity=-0.059 Sum_probs=142.9
Q ss_pred HhhhccChhHHHHHHHHhhhhhcccc--------ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCL--------FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~--------~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
..++.|+++.|...|.+..+..|+.. .+. .++|+.++++.... -.........+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45678888888888888877655532 111 77888887777621 111222233334567777888888
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHh
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEG 151 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~ 151 (250)
.++++++.+.. +-|...+..++..+...++.++|.+.++++... .|+...+..+ ..+|++.++++..
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888876652 223455666677888888888888888877643 3333333222 2246666666653
Q ss_pred hhhccCCchhhhc------------------------------------------------------chhHHHHHHHHHh
Q 037164 152 LIATKRNSSNAFE------------------------------------------------------LKDQLYRIWKHYG 177 (250)
Q Consensus 152 ~~~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~~ 177 (250)
.. |..... .+. +...+++++..+.
T Consensus 198 ~~-P~n~e~-~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEV-LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHH-HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 32 222210 111 1113333333333
Q ss_pred cc----CC-CCh-hhH-H---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 178 QT----RK-VFN-KGY-M---TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 178 ~~----~~-~~~-~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.. .. |.. ..| . =.+-++.+.|++.++++-|+.+...+.+.-..+-..+.++|...+++++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 32 12 322 222 2 33468889999999999999999888765567888999999999999999999998865
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.72 E-value=4.9e-08 Score=77.61 Aligned_cols=201 Identities=15% Similarity=0.062 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHCCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.++|.+++.+-....-+| |..-|..+...+...++++.|.+.++.+...+-. +...+..++.. ...+++++|.+++.
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~ 101 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAE 101 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccc
Confidence 789999997665443234 4444555556777899999999999999876544 56677778777 79999999999998
Q ss_pred HHhhCCCCCccH-HHHHHH------HHHHHHHHHHHHhhhh-ccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164 121 MTESNPQMVLDF-NLLAVL------LYMAMTMLKKSEGLIA-TKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF 183 (250)
Q Consensus 121 ~m~~~~g~~~~~-~~~~~l------~~~a~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~ 183 (250)
..-+. .-.|.. ..+..+ .+++.+++.+...... +.+. . .|. +.|+..++.+.++.... |+
T Consensus 102 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 102 KAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA-R-FWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -----------------H-HHHTT-HHHHHHHHHHHHH-T---T-H-H-HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred ccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 76544 222222 111111 7888888888774332 2222 1 222 77888888888877643 54
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 -NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
....+.++..+...|+.+++..+++...... +.|...|..+..+|...|+.++|..++++..+.
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 5778899999999999999999999988543 778889999999999999999999999998763
No 42
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.71 E-value=3.8e-08 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 219 (250)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999874
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.70 E-value=1.4e-05 Score=72.34 Aligned_cols=112 Identities=6% Similarity=-0.042 Sum_probs=63.0
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
.+.+....|+.++|.+++.......|... .+. .++|..+|++..+.. +.+...+..+..++...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 34455556666666666666554211111 111 666666666665542 33445555666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
++|...+++..+. -+.+.. +..+...+...|+.++|...+++...
T Consensus 100 ~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 100 DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666665554 222333 55566666666666666666666643
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.64 E-value=2.6e-05 Score=70.67 Aligned_cols=230 Identities=9% Similarity=-0.032 Sum_probs=156.9
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+-.++.+.|++++|..+|+......|+.. .+. .++|...+++..+. .+.+.. +..+..++...|+
T Consensus 54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGR 131 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCC
Confidence 344567889999999999999877644432 222 89999999999886 345566 8889999999999
Q ss_pred hhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-------HHHHH----------
Q 037164 77 REKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN-------LLAVL---------- 138 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-------~~~~l---------- 138 (250)
+++|...+++..+. .| +...+..+...+...++.+.|.+.++..... |+.. ....+
T Consensus 132 ~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~----p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 132 HWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLT----PAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhhcccccCh
Confidence 99999999988775 44 4455666788888999999999988765532 2210 00000
Q ss_pred ------HHHHHHHHHHHHhhh--hccCCchhhh-----------cchhHHHHHHHHHhccCC--CC-h-hhHHHHHHHHH
Q 037164 139 ------LYMAMTMLKKSEGLI--ATKRNSSNAF-----------ELKDQLYRIWKHYGQTRK--VF-N-KGYMTMMGLLL 195 (250)
Q Consensus 139 ------~~~a~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~--~~-~-~~~~~li~~~~ 195 (250)
.++|.+.++.+.... .|... . .+ ...++..++...++.... ++ + ..-..+...|.
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~-~-~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDAT-A-DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccc-h-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 256777777776432 22221 0 11 134455556665555433 11 1 12223567899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC---CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 196 KLDDVKGAEKTLRNWTSKNLPY---DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 196 ~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..|+.++|+.+|++........ .......|..++...|++++|..+++++.+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9999999999999987432111 1234666777899999999999999988753
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.62 E-value=4.7e-05 Score=61.23 Aligned_cols=229 Identities=12% Similarity=-0.007 Sum_probs=150.6
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc--ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL--FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
.+--+.|+.+.|-+++.+.-+..++.. .+- .+.|..-..++.+.+ +-++..-.....+|.+.|++.
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~ 204 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQ 204 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHH
Confidence 344455666666666666655522221 111 456666666666653 345577788888888888888
Q ss_pred hHHHHHHHHHhcCCCCCc-------hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-------HHHHHH
Q 037164 79 KIDALMLEMEEKSINGDQ-------FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-------LYMAMT 144 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~-------~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-------~~~a~~ 144 (250)
.+..++..|.+.|+--|. .+|+.++.-....+..+.-...++.......-.|....-.+. .++|.+
T Consensus 205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 888888888888776544 367778877777777777777777764432333443322222 777777
Q ss_pred HHHHHHhh-hhccCCchhhhc------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164 145 MLKKSEGL-IATKRNSSNAFE------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217 (250)
Q Consensus 145 ~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 217 (250)
+..+..+. ..+.-. .+- +.+...+..+.--...+.+.-.+.++-..|.+.+.+.+|...|+... ...|
T Consensus 285 ~i~~~Lk~~~D~~L~---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~ 359 (400)
T COG3071 285 IIEDALKRQWDPRLC---RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRP 359 (400)
T ss_pred HHHHHHHhccChhHH---HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCC
Confidence 77776632 211111 111 33333333333222233444777888899999999999999999654 4789
Q ss_pred CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 218 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+..+|+.+-.++.+.|+.++|.++.++..
T Consensus 360 s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 360 SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 46
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.59 E-value=5.7e-08 Score=49.62 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSI 92 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi 92 (250)
+|||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777664
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.5e-05 Score=61.35 Aligned_cols=60 Identities=12% Similarity=-0.023 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
...|.+|-.+|.+.++.++|++.|.....-|- .+...+..|-+.|-+-++.++|...+.+
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555555555555555555544442111 1224444444444444444444444443
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.55 E-value=1.1e-05 Score=68.39 Aligned_cols=219 Identities=13% Similarity=0.042 Sum_probs=135.6
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhh---c---ccc------ccc--------hhHHHHHHHHHHH-------CCCCccH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLL---R---QCL------FFG--------VGKAEMVVQEMKD-------MGFARRT 61 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~---~---~~~------~y~--------~~~A~~~~~~m~~-------~~~~p~~ 61 (250)
.+-.+|+..|+++.|+.+|+.-.... . .+. .+. ..+|..+|+++.. ..-+--+
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 56678999999999999998754431 0 000 111 5666666666533 2233345
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHh---c--CC-CCCch-hHhhhHHHHHhcCChhHHHHHHHHHhhCC--CCCcc-
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEE---K--SI-NGDQF-TLGIRPSAYAAASDIHGMDKIINMTESNP--QMVLD- 131 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~---~--gi-~p~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~~~--g~~~~- 131 (250)
.+++.|-.+|.+.|++++|..++++..+ + |. .|.+. -++.+...|+..+++++|..+++...+.. -..++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 7788888999999999999888886432 2 22 23333 35667788999999999999988654320 11222
Q ss_pred ---HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 037164 132 ---FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDD 199 (250)
Q Consensus 132 ---~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 199 (250)
..+++.+ +++|.+++++............ ........+.+-..|.+.++
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~-------------------~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK-------------------DYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc-------------------ChhhhHHHHHHHHHHHHhcc
Confidence 2333333 5556665555542221111100 00123456667777888888
Q ss_pred HHHHHHHHHHHH----hCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 200 VKGAEKTLRNWT----SKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 200 ~~~A~~~~~~m~----~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
...|.++|.+.. .-|. +-...+|..|...|.+.|+++.|.++.+...
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888888887732 2222 2234567888888888888888888877765
No 49
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.54 E-value=1.9e-07 Score=48.75 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 217 (250)
.+|+++|.+|++.|+++.|.++|+.|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=2e-05 Score=67.42 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=130.8
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc--h---------------hHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG--V---------------GKAEMVVQEMKDMGFARRTIYCYIMMILN 71 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~--~---------------~~A~~~~~~m~~~~~~p~~~~y~~li~~~ 71 (250)
..-..+.+.|+.++|...+..+....|+-..|- + +...++++++.+.- |.......+.-.+
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~ 120 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhccc
Confidence 344566677777777777777766655554444 1 22233344333321 2222221121111
Q ss_pred hhcCCh-hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCC-------------CCCccHHHHHH
Q 037164 72 YLTGNR-EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNP-------------QMVLDFNLLAV 137 (250)
Q Consensus 72 ~~~g~~-~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-------------g~~~~~~~~~~ 137 (250)
..-..+ ..+..++..+..+||+ .+|+.|-..|......+-..+++....... .-.|+...|..
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~ 197 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL 197 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence 111111 2445555556666653 455555556665555555555555543210 11244433433
Q ss_pred H-----------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 037164 138 L-----------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLK 196 (250)
Q Consensus 138 l-----------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~ 196 (250)
. +++|++..++..... |+... .|. +.|++.++.+.+..... .|-..=+-....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~e--ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVE--LYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3 666666666555333 22221 222 78888888887766544 444666678889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcch--------HHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 197 LDDVKGAEKTLRNWTSKNLPYDFGLP--------SSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.|++++|++++......+..|-...+ ..--.+|.+.|++..|.+.|....+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999877765533332 4556789999999999988877654
No 51
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.51 E-value=1.5e-07 Score=48.06 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=18.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
+||+||++|++.|++++|.++|++|.++|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666666553
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.2e-05 Score=63.61 Aligned_cols=229 Identities=10% Similarity=0.036 Sum_probs=159.9
Q ss_pred hhHhhhccChhHHHHHHHHhhhh-hccccccc--------hhHHHHHHHH---HHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKL-LRQCLFFG--------VGKAEMVVQE---MKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~--------~~~A~~~~~~---m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
-+-+...+++.+..++++.+.+. ++...++. ..+..++|.- |.+ ..|..+.+|-++-.-|...|+.+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHHHHHHhcCcH
Confidence 34556678888888888887776 45555555 4445555543 333 35677888988888888889999
Q ss_pred hHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHHHHHHH-------HHHHHHHHHHH
Q 037164 79 KIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFNLLAVL-------LYMAMTMLKKS 149 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l-------~~~a~~~~~~~ 149 (250)
+|.++|. +...+.|.- ..|-..-++|+-.+..|+|...+...-+- +|.- -+..|..+ ++-|.+.|...
T Consensus 330 eARry~S--Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 330 EARRYFS--KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHH--HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999998 444555443 56777888888888889888888766332 2332 23444444 77788888777
Q ss_pred HhhhhccCCchhhhc-------chhHHHHHHHHHhcc-------CC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 150 EGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT-------RK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 150 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.... |.++ . .++ ..+...++...++.. .. ....+++.|-++|.+.++.++|+..+++...
T Consensus 407 ~ai~-P~Dp-l-v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 407 LAIA-PSDP-L-VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HhcC-CCcc-h-hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6544 3333 1 222 344444444444332 11 2456788899999999999999999999874
Q ss_pred CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
. .+-|..++.++--.|...|+++.|.+.|++.+.
T Consensus 484 l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 484 L-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred c-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 4 455889999999999999999999999998764
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.7e-05 Score=63.84 Aligned_cols=192 Identities=10% Similarity=0.100 Sum_probs=117.9
Q ss_pred ccChhHHHHHHHHhhhhhccc--cccc----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164 17 VHGVEQAEIYFDNISKLLRQC--LFFG----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM 84 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~--~~y~----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 84 (250)
.|++++|..++.+......+. -.|+ +++|++.|-++... +..++.+.--+.+.|-...++..|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 567777777776655431111 1222 67777777766543 3455666666677777777777777776
Q ss_pred HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc
Q 037164 85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE 164 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (250)
.+..+. ++-|+...+-|-..|-+.||-..|.+++=+--.- ++-+..|.-.+ .. -|.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl-----------~a----------yyi 637 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWL-----------AA----------YYI 637 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHH-----------HH----------HHH
Confidence 644332 4445566666777777777777777765444322 22222221111 00 011
Q ss_pred chhHHHHHHHHHhcc--CCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC
Q 037164 165 LKDQLYRIWKHYGQT--RKVFNKGYMTMMG-LLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL 234 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~--~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 234 (250)
.-.-.+++++.++.. ..|+..-|..+|. ++.+.|++.+|.++|+... ..++-|....-.|++.+...|.
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhccccc
Confidence 333334445555443 2388888998885 5567799999999999987 4577788889999998888775
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=98.45 E-value=6e-05 Score=65.81 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=131.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHh---------hcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCC
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNY---------LTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~---------~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~ 111 (250)
.++|..+|++..+.. +-+...|..+..+|. ..+++++|...+++..+. .| +...|..+-..+...|+
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccC
Confidence 689999999998863 334556666655554 234578999999977764 44 55677778788999999
Q ss_pred hhHHHHHHHHHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc------chhHHHHHHHH
Q 037164 112 IHGMDKIINMTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE------LKDQLYRIWKH 175 (250)
Q Consensus 112 ~~~a~~~~~~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 175 (250)
+++|...+++.... .|+ ...+..+ .++|...+++..... |..... .+. ..++.+++...
T Consensus 354 ~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~-~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA-GITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh-HHHHHHHHHhccCHHHHHHH
Confidence 99999999998754 233 2333333 888999998887544 232211 111 44555666666
Q ss_pred HhccC---CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 176 YGQTR---KVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 176 ~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+++.. +|+. ..+..+-.++...|+.++|...+.++.. ..+.+....+.|...|+..| +.|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-QEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 55432 2433 4466677788899999999999988753 23334455666667778777 478887777665
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.44 E-value=0.00035 Score=59.98 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=166.5
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
+.|.+.+.++-|.-+|....+..|. .+.|. .+.-..+|++.... ++.....|--...-+-..|++-.
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence 3567778888888888876666333 33333 78888888888876 55556666666677888999999
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHHHHHHHhhh
Q 037164 80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMTMLKKSEGLI 153 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~~~~~~~~~ 153 (250)
|..++.+.-+.. +-+...|-.-++.-.....+++|..+|.+.....|.+--+.-+..+ .++|.+++++..+..
T Consensus 603 ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 603 ARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999877652 2366888888999999999999999999987653443333333333 778888887766544
Q ss_pred hccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchH
Q 037164 154 ATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPS 223 (250)
Q Consensus 154 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 223 (250)
..... .|. +.+.++.+-+.+... ++-....|..+-..=-+.|.+-.|..+++.-+ ...+-+...|-
T Consensus 682 p~f~K---l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar-lkNPk~~~lwl 757 (913)
T KOG0495|consen 682 PDFHK---LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR-LKNPKNALLWL 757 (913)
T ss_pred CchHH---HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH-hcCCCcchhHH
Confidence 22222 333 445555555554443 33444777777777788899999999999987 44566899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 037164 224 SLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 224 ~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..|+.=.+.|+.+.|..++.+.++
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999888765
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.43 E-value=7.4e-05 Score=68.89 Aligned_cols=182 Identities=11% Similarity=-0.029 Sum_probs=132.2
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL- 138 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l- 138 (250)
+...|..+-.++.. +++++|...+.+-... .|+......+...+...|++++|...++++...+...+.......+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 67788888888877 8899999977766544 3665543344455568999999999999976531111122211111
Q ss_pred -----HHHHHHHHHHHHhhhhccCCchhhhc----ch---hHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHH
Q 037164 139 -----LYMAMTMLKKSEGLIATKRNSSNAFE----LK---DQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAE 204 (250)
Q Consensus 139 -----~~~a~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 204 (250)
.++|...+.+..... |.... .+. .. ++..++...++.... |+...|..+-..+.+.|+.++|+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~--l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNA--LYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788899988887543 33221 221 33 788888888776643 67788899999999999999999
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 205 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..|++.... .+.+...++.+-..+...|+.++|...+++..+.
T Consensus 630 ~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 630 SDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999998854 3446678888888999999999999999988753
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.4e-05 Score=62.63 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-- 138 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-- 138 (250)
.|+-++-+-|+-.++.++|..+|++-.+ +.|. ...|+.+-+-|....+...|.+.++..... .+-|.-.|..+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQ 406 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhH
Confidence 4556666666666666666666664433 2332 244555556666666666666666655532 22232222222
Q ss_pred -------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHH
Q 037164 139 -------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGA 203 (250)
Q Consensus 139 -------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 203 (250)
..=|+-.|++... ..|.+.+. ..|.+.+..+++.+.++.... .....+..|-..|-+.++..+|
T Consensus 407 aYeim~Mh~YaLyYfqkA~~-~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALE-LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHhcchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 2222333333321 12222210 011255555555555555433 2224555555666666666666
Q ss_pred HHHHHHHH
Q 037164 204 EKTLRNWT 211 (250)
Q Consensus 204 ~~~~~~m~ 211 (250)
-..|++..
T Consensus 486 a~~yek~v 493 (559)
T KOG1155|consen 486 AQYYEKYV 493 (559)
T ss_pred HHHHHHHH
Confidence 66655544
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=3.2e-05 Score=60.90 Aligned_cols=196 Identities=9% Similarity=0.000 Sum_probs=117.1
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHH-HHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYC-YIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y-~~li~~~~~~g~~~~ 79 (250)
.+|-+.|...+|++.|..-....|-+.+|- ++.|+.+|.+-.+. + |-.+|| .-+...+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-f-P~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-F-PFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-C-CchhhhhhhhHHHHHHHHhHHH
Confidence 356677888888888877665555555544 67777777776664 3 444444 344556677777888
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHH
Q 037164 80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE 150 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~ 150 (250)
|.+++++..+.. .-|+.....+-.+|.-.++.+-|.+.++++.+- |+. +...|..+ ++-++..|.+..
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 888887755431 225555666667777778888888888887776 653 33344433 566666666655
Q ss_pred hhhh-ccCCchhhhc------chhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 151 GLIA-TKRNSSNAFE------LKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 151 ~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.-.. |....-+.|+ ..|+..-+-..++-... ++. ..+|.|--.-.+.|+++.|..+++...+
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 2221 2222111444 55555555555443322 222 5666666666677777777777776554
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.39 E-value=0.00066 Score=54.84 Aligned_cols=233 Identities=15% Similarity=0.032 Sum_probs=142.7
Q ss_pred hhHhhh--ccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 11 LNLIFE--VHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 11 l~~~~k--~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+++-+ .|+|.+|+++...-.+..+.+. .|- .+.|-.++.+..+.--.++...+-+.-......|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 334444 4889999998888666544443 333 78888888888876335666777777788888999
Q ss_pred hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHH-HHHHHHH-----
Q 037164 77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAM-TMLKKSE----- 150 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~-~~~~~~~----- 150 (250)
...|..-.++..+.+= -+.........+|.+.|++.++..++..+.+. |.--|. -+..+-..|. .++++..
T Consensus 169 ~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~-e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDE-EAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChH-HHHHHHHHHHHHHHHHHhccccc
Confidence 9988888887766532 25667788889999999999999999999887 664432 2222211111 1111111
Q ss_pred -----------hhhhccCCchhhhc----chhHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 151 -----------GLIATKRNSSNAFE----LKDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 151 -----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
.....+..-.++|. .+++-+++.+..++.-+ .|.. -+..-.+.+-++...-++..++...
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~- 322 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK- 322 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH-
Confidence 00000000000222 44444455444444322 2222 2222344455555555555555542
Q ss_pred CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
..+-++-.+.+|-..|.+.+.|.+|...|+...+.+
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 233356889999999999999999999999876643
No 60
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.38 E-value=6.7e-05 Score=66.61 Aligned_cols=235 Identities=14% Similarity=0.060 Sum_probs=162.9
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh-----hccc-------cccc----------hhHHHHHHHHHHHCCCCccHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL-----LRQC-------LFFG----------VGKAEMVVQEMKDMGFARRTIYCYI 66 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~-----~~~~-------~~y~----------~~~A~~~~~~m~~~~~~p~~~~y~~ 66 (250)
.+=......|.++.|...|...... .++. ..|| .+.|.+.|....+.. |+-+..-.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHH
Confidence 3444567789999999999876655 2222 1566 677889999987752 55444333
Q ss_pred HHHH-HhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-------
Q 037164 67 MMIL-NYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------- 138 (250)
Q Consensus 67 li~~-~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------- 138 (250)
-+.+ --..++..+|...+++...- ...|+..++.+-..|.+...+.-|.+-|+.+...+...+|.++..+|
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 3333 33456778888888886553 23355555557778999999999999888876653444676666555
Q ss_pred --------------HHHHHHHHHHHHhhhhccCC-----chhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 037164 139 --------------LYMAMTMLKKSEGLIATKRN-----SSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLK 196 (250)
Q Consensus 139 --------------~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~ 196 (250)
.++|+++|.+..+....+-. .. ++...+.+..+..+|.+... ....+|-.+-++|..
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi-VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI-VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh-hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 77788887776643311111 00 11266666777666655533 345889999999999
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 197 LDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.|++..|.+.|+...++ ....++.+...|-+++-++|.+.+|.+.+.....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999997654 5666888899999999999999999887766543
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.00061 Score=53.74 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=122.0
Q ss_pred ccChhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHCCCCccH------HHHHHHHHHHhhcCC
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDMGFARRT------IYCYIMMILNYLTGN 76 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~------~~y~~li~~~~~~g~ 76 (250)
..+.++|.++|-+|.+. ++.+|. +++|+++.+.+.++ ||. ..--.|-.=|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 46778899999998875 445554 89999999988775 552 222344455788899
Q ss_pred hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH----HHHH---------HHHHH
Q 037164 77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL----LAVL---------LYMAM 143 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~----~~~l---------~~~a~ 143 (250)
+|.|+.+|..+.+.|-- -...---|+..|-..+++++|.++-+++... +-.+..+- |.-+ .++|.
T Consensus 123 ~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999988775322 2345566889999999999999998877655 33332222 2222 77777
Q ss_pred HHHHHHHhhhhccCCchhhhc------chhHHHHHHHHHhcc---CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 144 TMLKKSEGLIATKRNSSNAFE------LKDQLYRIWKHYGQT---RK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
..+++.......+.. . +.. ..|+...+.+.++.. .+ .-..+-..|..+|...|+.++...++..+...
T Consensus 201 ~~l~kAlqa~~~cvR-A-si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQADKKCVR-A-SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhCcccee-h-hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777777644322222 2 221 444444444443332 22 33456677888999999998888888886543
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.37 E-value=0.0002 Score=57.46 Aligned_cols=80 Identities=9% Similarity=-0.095 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.++|...|++..+.. +.+...|+.+-..|...|++++|...|+...+ +.|+ ..+|..+..++...|++++|.+.++
T Consensus 80 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 80 RALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566677777766653 34466777777777777777777777776554 3343 4556666666777777777777777
Q ss_pred HHhh
Q 037164 121 MTES 124 (250)
Q Consensus 121 ~m~~ 124 (250)
....
T Consensus 157 ~al~ 160 (296)
T PRK11189 157 AFYQ 160 (296)
T ss_pred HHHH
Confidence 6653
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=3.6e-05 Score=63.16 Aligned_cols=224 Identities=9% Similarity=0.040 Sum_probs=138.7
Q ss_pred HhhhccChhHHHHHHHHhhhhh-cccc--ccc------------hhHHHHHHHHHHHCCCCccHHHHHHH-----HHHHh
Q 037164 13 LIFEVHGVEQAEIYFDNISKLL-RQCL--FFG------------VGKAEMVVQEMKDMGFARRTIYCYIM-----MILNY 72 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~-~~~~--~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~l-----i~~~~ 72 (250)
-|-|.|+++.|.+++....+.. ...+ .-+ +..|..+-+.... ..-||.- -+.-.
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------IDRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------ccccCHHHhhcCCceee
Confidence 3678899999999888776651 1111 001 3344443333322 2233322 12234
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-------HHHHH--HHHHH
Q 037164 73 LTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN-------LLAVL--LYMAM 143 (250)
Q Consensus 73 ~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-------~~~~l--~~~a~ 143 (250)
..|++++|.+.+++...++-.-....||+=+ .+-+.|++++|+++|-.+... +..+.. +|-.+ ...|+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 5789999999999988774433334444433 355689999999998877532 111221 22222 45566
Q ss_pred HHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 144 TMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 144 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
+++......+ |+++.+ ..|.+.|+-..+++..-.... | +..+..=|-..|....-.++|+..|++.. =+
T Consensus 579 e~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--li 655 (840)
T KOG2003|consen 579 ELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI 655 (840)
T ss_pred HHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence 6665554433 444410 022256666666666544433 3 44666666677788888899999999864 37
Q ss_pred CCCCcchHHHHHHHHh-cCChhHHHHHHHHHHhc
Q 037164 216 PYDFGLPSSLIDAHCK-NGLLEKAQSLINHAETK 248 (250)
Q Consensus 216 ~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~ 248 (250)
.|+..-|..||..|.+ .|++.+|..+++++.++
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8999999999998876 79999999999987653
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.31 E-value=0.00025 Score=56.90 Aligned_cols=204 Identities=8% Similarity=-0.125 Sum_probs=132.9
Q ss_pred cccchhHHHHHHHHHHHCC-CCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhH
Q 037164 38 LFFGVGKAEMVVQEMKDMG-FARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114 (250)
Q Consensus 38 ~~y~~~~A~~~~~~m~~~~-~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~ 114 (250)
..|..+.+..-+.++.... ..|+ ...|..+-..|.+.|++++|...|++..+.. +.+...|+.+-..+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455888888888887642 2222 4568888889999999999999999877652 2356889999999999999999
Q ss_pred HHHHHHHHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCC-chhhhc----chhHHHHHHHHHhcc
Q 037164 115 MDKIINMTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRN-SSNAFE----LKDQLYRIWKHYGQT 179 (250)
Q Consensus 115 a~~~~~~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 179 (250)
|...|++..+. .|+ ...+..+ .++|.+.+++..... |+.. .. .+. ..++..++.+.+...
T Consensus 117 A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 117 AYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPYRA-LWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH-HHHHHHHccCCHHHHHHHHHHH
Confidence 99999998753 333 3333333 888988888877543 3322 11 111 334455666655432
Q ss_pred CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC-----CCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 180 RK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLP-----YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 180 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.. .+...|.. -......|+...+ ..++.+... ... .....|..+-..+.+.|++++|...|++..+..
T Consensus 192 ~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22 11222221 1222335555544 355555421 111 123578899999999999999999999987653
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.25 E-value=9.8e-06 Score=71.13 Aligned_cols=216 Identities=8% Similarity=-0.024 Sum_probs=123.7
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh--hccccccc-----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh--
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK-- 79 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~-- 79 (250)
+++.-||..|+++.|- +|.-|..+ +.+...++ -..| +.|... -.|.+.||+.|..+|.+.||...
T Consensus 30 sLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A----nd~Enp-kep~aDtyt~Ll~ayr~hGDli~fe 103 (1088)
T KOG4318|consen 30 SLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA----NDAENP-KEPLADTYTNLLKAYRIHGDLILFE 103 (1088)
T ss_pred HHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc----ccccCC-CCCchhHHHHHHHHHHhccchHHHH
Confidence 8899999999999999 88887766 33334444 0111 112111 16888999999999999999765
Q ss_pred -HHHHHHHH----HhcCCC-CCchh-------------HhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164 80 -IDALMLEM----EEKSIN-GDQFT-------------LGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-- 138 (250)
Q Consensus 80 -a~~~~~~m----~~~gi~-p~~~t-------------y~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-- 138 (250)
+.+.+... ..+|+- |.... -.++|.-..-.|-++.+.+++..+--..-..|........
T Consensus 104 ~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~ 183 (1088)
T KOG4318|consen 104 VVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV 183 (1088)
T ss_pred HHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc
Confidence 33322221 122321 11111 1222333333444555555554442211122222211111
Q ss_pred ----HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc----CCCChhhHHHHHHHHHhcCCHHHH
Q 037164 139 ----LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT----RKVFNKGYMTMMGLLLKLDDVKGA 203 (250)
Q Consensus 139 ----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A 203 (250)
+++-..+.+.... .+++. +|. ..|+++-+.+++.++ .+.+.+-|..+|-+ .++...+
T Consensus 184 ~ntpvekLl~~cksl~e--~~~s~---~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~ 255 (1088)
T KOG4318|consen 184 DNTPVEKLLNMCKSLVE--APTSE---TLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVF 255 (1088)
T ss_pred CCchHHHHHHHHHHhhc--CCChH---HHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHH
Confidence 3333322222222 23333 554 445555555555444 33556667777766 8899999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA 238 (250)
Q Consensus 204 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 238 (250)
+.++..|...|+.|+..|+.--+..+..+|....+
T Consensus 256 e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 256 EFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 99999999999999999999888888886664433
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.23 E-value=0.00097 Score=56.09 Aligned_cols=223 Identities=13% Similarity=-0.013 Sum_probs=152.9
Q ss_pred hccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHH--HHHHHHHHHhhcCChhhHH
Q 037164 16 EVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTI--YCYIMMILNYLTGNREKID 81 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~--~y~~li~~~~~~g~~~~a~ 81 (250)
..|+++.|++.+....+..|++..+- .+.|..++.+..+.. |+.. .--.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 36999999999998877766655443 799999999987653 5543 3334577888999999999
Q ss_pred HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--------HHHH-----HHHHHH
Q 037164 82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--------LYMA-----MTMLKK 148 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--------~~~a-----~~~~~~ 148 (250)
+.++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+. +..+ ...+..+ +..+ .+.+..
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998874 336677888899999999999999999999887 5543 2223211 2222 224444
Q ss_pred HHhhhhc---cCCch-hhh----cchhHHHHHHHHHhccCC--CChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 149 SEGLIAT---KRNSS-NAF----ELKDQLYRIWKHYGQTRK--VFNKG---YMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 149 ~~~~~~~---~~~~~-~~~----~~~~~~~~~~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
+...... ++... ..+ ...++.+++.+.+.+... |+... ...........++.+.+.+.++...+. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-V 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-C
Confidence 4422211 12211 011 177777788777766543 44432 122223334457888999999887743 3
Q ss_pred CCCC--cchHHHHHHHHhcCChhHHHHHHHH
Q 037164 216 PYDF--GLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 216 ~~~~--~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
+-|. ....++-+.|.+.|++++|.+.|+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3344 6777999999999999999999994
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.23 E-value=0.0004 Score=59.58 Aligned_cols=235 Identities=15% Similarity=0.091 Sum_probs=138.6
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc---
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT--- 74 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~--- 74 (250)
..+++...|++++|.+.+++......+...+. .++|..+|..+.+.+ +.|..-|..|..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34678889999999999988766655555444 789999999998875 33444445555555222
Q ss_pred --CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh-HHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHH
Q 037164 75 --GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH-GMDKIINMTESNPQMVLDFNLLAVL------LYMAMTM 145 (250)
Q Consensus 75 --g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~-~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~ 145 (250)
.+.+...++++++.+.- |......-+.-.+.....+. .+...+..+... |+++-....-.+ ..-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHH
Confidence 25677788888876652 44444333332232222332 345555666666 876544444444 1122222
Q ss_pred HHHHHhhh-----h-------ccCCchhhhc---------chhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHH
Q 037164 146 LKKSEGLI-----A-------TKRNSSNAFE---------LKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVK 201 (250)
Q Consensus 146 ~~~~~~~~-----~-------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~ 201 (250)
+....... . ...+....|. ..++.+++.+.+..... |+. ..|..--..|-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 22222111 0 0111000111 66667777777665433 443 66666667777888888
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
+|.+.++..+.... -|-.+=+-....+.++|++++|..++....+.+
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 88888887775433 356666667777788888888888877665554
No 68
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.22 E-value=7.1e-06 Score=60.97 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC----------------ChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG----------------NREKIDALMLEMEEKSINGDQFTLGIRPSA 105 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g----------------~~~~a~~~~~~m~~~gi~p~~~ty~~li~~ 105 (250)
++=....+..|.+.|+.-|..+|+.|+..+=+.. +-+-|++++++|+.+|+.||..|+..|++.
T Consensus 68 VeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 68 VEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 4445566788888899999999999998886521 336789999999999999999999999999
Q ss_pred HHhcCC
Q 037164 106 YAAASD 111 (250)
Q Consensus 106 ~~~~~~ 111 (250)
|++.+.
T Consensus 148 FG~~s~ 153 (228)
T PF06239_consen 148 FGRKSH 153 (228)
T ss_pred hccccH
Confidence 987765
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.18 E-value=0.0032 Score=55.94 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+...|.-+-.+|...|+++.|..+|..+.+...--+...|--+-++|-..|..+.|.+.+++.+.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34566677788888899999999998888665555677888888888888888888888887654
No 70
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.00011 Score=63.46 Aligned_cols=191 Identities=13% Similarity=0.061 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
...|..+|++. ..|--+|.+|+..|+..+|..+..+-.+ -+||..-|..+.+......-+++|.++.+.
T Consensus 414 tksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 414 TKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred HHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence 44555555544 4677888999999999999999887666 468888999998888888889999999887
Q ss_pred HhhCCCCCccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC--CCCh-hhHHHH
Q 037164 122 TESNPQMVLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR--KVFN-KGYMTM 190 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~-~~~~~l 190 (250)
.......-.....++.- +.++.+.|+........... +|- +.++.+.+.+.|..-. .|+. ..||++
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 64320111011111111 55566666555433222222 322 6666666666665432 2665 899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
=.+|.+.|+..+|...+++..+.. .-+..+|..-+-...+.|.+++|.+.+.++..
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999999999988555 66788899999999999999999999988865
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00013 Score=60.45 Aligned_cols=191 Identities=9% Similarity=0.029 Sum_probs=118.5
Q ss_pred HhhhccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
+|....+-++..+.|+..... +.++.+|. .++|..=|++..+.+ +-++..|--+-.+..|.++++++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777766555 44556666 677777777776653 33456666666666777778888
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc--HHHHHHH--HHHHHHHHHHHHhhhhcc
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD--FNLLAVL--LYMAMTMLKKSEGLIATK 156 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~l--~~~a~~~~~~~~~~~~~~ 156 (250)
+..|++.+.+ ++--+..||..-..+...++++.|.+-|+.... ++|+ .+..+.. +.+|.-+++
T Consensus 448 m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~q--------- 514 (606)
T KOG0547|consen 448 MKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQ--------- 514 (606)
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhc---------
Confidence 8888877765 655667777777777788888888888776543 2222 1111111 444443333
Q ss_pred CCchhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Q 037164 157 RNSSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHC 230 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 230 (250)
..+++..+.+++..... .....|..|-..-..+|++++|+++|++-... ..|-.-++++|.
T Consensus 515 --------wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~s 578 (606)
T KOG0547|consen 515 --------WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAYS 578 (606)
T ss_pred --------hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHHH
Confidence 12455566666655544 33466777777788888888888888875421 334444555543
No 72
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.12 E-value=1.8e-05 Score=65.67 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHCC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMG--FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
++.+..++.+.+... ...-..|..++|..|...|..+.++++++.=...|+-||.+|+|.||+.+.+.|++..|.++.
T Consensus 82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~ 161 (429)
T PF10037_consen 82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVA 161 (429)
T ss_pred HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence 788999999987762 222335667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCccHHHHHHH
Q 037164 120 NMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~~~~l 138 (250)
..|... +...+..|+...
T Consensus 162 ~~~~lQ-e~~~~~~t~~L~ 179 (429)
T PF10037_consen 162 TEMMLQ-EEFDNPSTQALA 179 (429)
T ss_pred HHHHHh-hccCCchHHHHH
Confidence 998776 666666666544
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.10 E-value=0.0023 Score=49.43 Aligned_cols=177 Identities=12% Similarity=-0.050 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc----hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH-HH
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ----FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF-NL 134 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~----~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~ 134 (250)
....+-.+...+.+.|+++.|...|++.... .|+. ..+..+..++.+.|++++|...++++.....-.|.. ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3556677777788888888888888876553 2322 355666778888888888888888875431111221 11
Q ss_pred HHHH-----------------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 037164 135 LAVL-----------------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL 197 (250)
Q Consensus 135 ~~~l-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 197 (250)
+..+ .++|.+.+++..... |.... . .++...+.............+-..+.+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~--~-------~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEY--A-------PDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChh--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111 223333333333221 11110 0 0000000000000000112445678899
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 198 DDVKGAEKTLRNWTSKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
|+.++|...++....... +.....+..+..++.+.|++++|..+++.+..+
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999875421 224568899999999999999999999988764
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.08 E-value=0.004 Score=51.19 Aligned_cols=234 Identities=9% Similarity=-0.016 Sum_probs=139.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhcccc-c------cc--------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCL-F------FG--------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~-~------y~--------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
.+...|++++|.++++......|+.. . +. ...+.+.+.. .....+........+...+...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 45567999999999998776644432 1 11 3344444443 1111222334445666788999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH--HHHHH---------HHHHHHHH
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN--LLAVL---------LYMAMTML 146 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~l---------~~~a~~~~ 146 (250)
++|.+.+++..+.. +.+...+..+-..+...|++++|...+++........|+.. .|..+ .++|..++
T Consensus 131 ~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999887753 33566778888999999999999999998765412223332 22222 88899999
Q ss_pred HHHHhhhh-ccCCch--hh-hc-------chhHHHHHHHHHhccC----CCChhhH--HHHHHHHHhcCCHHHHHHHHHH
Q 037164 147 KKSEGLIA-TKRNSS--NA-FE-------LKDQLYRIWKHYGQTR----KVFNKGY--MTMMGLLLKLDDVKGAEKTLRN 209 (250)
Q Consensus 147 ~~~~~~~~-~~~~~~--~~-~~-------~~~~~~~~~~~~~~~~----~~~~~~~--~~li~~~~~~g~~~~A~~~~~~ 209 (250)
++...... ...... +. .. .......-|+.+.... ......+ .....++...|+.+.|..+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 88752111 011100 00 00 1122222232221111 1111222 2566788899999999999999
Q ss_pred HHhCCCC------C--CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 210 WTSKNLP------Y--DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 210 m~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+...... . .+......-.++...|+.+.|.+++......
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8753322 1 2222333334466899999999999887654
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.0011 Score=52.51 Aligned_cols=177 Identities=11% Similarity=-0.052 Sum_probs=88.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------ 138 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------ 138 (250)
+-+-.+|.+.|-+.+|.+.|+.-... .|-+.||-.|-+.|.+..+...|+.++.+-... . |.-+||-.-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--F-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--C-CchhhhhhhhHHHHH
Confidence 44555666666666666666543322 344555555666666666666666666655432 2 222333221
Q ss_pred ----HHHHHHHHHHHHhhhhccCCch----hhhc---chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164 139 ----LYMAMTMLKKSEGLIATKRNSS----NAFE---LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTL 207 (250)
Q Consensus 139 ----~~~a~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 207 (250)
.++|.+++++..+....+.... +.|- +++-.-+.+..+-+++.-+...|+.+--+|.-.+++|-+.--|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 4445555554442221111100 0111 4444444444444455555555666555555566666655555
Q ss_pred HHHHhCCCCC------------------------------------CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 208 RNWTSKNLPY------------------------------------DFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 208 ~~m~~~~~~~------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+...+.-..| +...+|.|--.-.+.|++++|..+++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 5544332222 34445555555566677777776666543
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.00 E-value=4.6e-05 Score=60.68 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=52.6
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT 74 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~ 74 (250)
..+.+|.+.+|++.|.+.|+.+.+...+..... .++|..+|+++.+. +.+++.+.|.+..++...
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence 344555555666666665555554422222111 45555555555443 445555555555555555
Q ss_pred CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCCh-hHHHHHHHHHh
Q 037164 75 GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDI-HGMDKIINMTE 123 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~-~~a~~~~~~m~ 123 (250)
|++++|.+++.+..+.+ +-|..|...+|.+....|+. +.+.+.+.+++
T Consensus 215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555555555543322 12334444455555555544 44445555544
No 77
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=7.1e-05 Score=49.70 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCC-CCCchhHhhhHHHHHhcC--------ChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAAS--------DIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~~~ty~~li~~~~~~~--------~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
...|.-+...+++.....+++.++++|+ .|++.+|+.++.+-++-. .+-..+.+|+.|... +++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4445555555777777777777777777 677777777776655432 133456667777666 677777777
Q ss_pred HHH
Q 037164 136 AVL 138 (250)
Q Consensus 136 ~~l 138 (250)
+.+
T Consensus 108 niv 110 (120)
T PF08579_consen 108 NIV 110 (120)
T ss_pred HHH
Confidence 666
No 78
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.97 E-value=0.0018 Score=57.98 Aligned_cols=231 Identities=15% Similarity=0.106 Sum_probs=151.7
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc-ccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL-FFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
+++.++|+.+.|...|....+..|... ++- ..++..++...-..+ .-|++.-|.|-+.|.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 456688888888888888777644222 111 677777777764442 4567788999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----------HHHHH
Q 037164 77 REKIDALMLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-----------LYMAM 143 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----------~~~a~ 143 (250)
+..|..+...+...-..-. ...|--+-.+|-..|++++|.+.|-+..+ ..||.+++... ++.+.
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHH
Confidence 9999999998876542111 22355577899999999999999887753 34444444443 67777
Q ss_pred HHHHHHHhhhhccCCch-----hhhc----chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHH--
Q 037164 144 TMLKKSEGLIATKRNSS-----NAFE----LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRN-- 209 (250)
Q Consensus 144 ~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~-- 209 (250)
..|....... |+.... -.|. .....+++.+.+..... .|...|-.+ .-+...++...+...|+.
T Consensus 363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l-aql~e~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL-AQLLEQTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH-HHHHHhcChHHHHHHHHHHH
Confidence 7777665333 122110 0111 23344666666655433 233444333 344556666666777765
Q ss_pred --HHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 210 --WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 210 --m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+.+++..+-+...|.+-..+...|++++|...|+.....
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 345666677889999999999999999999999987653
No 79
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.0035 Score=52.17 Aligned_cols=110 Identities=5% Similarity=0.038 Sum_probs=84.4
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhcccc--ccc----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQCL--FFG----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
.++=-|++.+..|..+++......|... .|. +..|.++|++-.+ ..|+...|++.|+.=.+-..++
T Consensus 114 ae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeie 191 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIE 191 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHH
Confidence 4455678888889988887766655443 232 7889999988776 4799999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.|..+++...- +.|++.+|--....=-+.|....|.++|.....
T Consensus 192 raR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 192 RARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999998664 348888887777766777777777777766543
No 80
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00016 Score=48.11 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHCCC-CccHHHHHHHHHHHhhcCC--------hhhHHHHHHHHHhcCCCCCchhHhhh
Q 037164 42 VGKAEMVVQEMKDMGF-ARRTIYCYIMMILNYLTGN--------REKIDALMLEMEEKSINGDQFTLGIR 102 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~-~p~~~~y~~li~~~~~~g~--------~~~a~~~~~~m~~~gi~p~~~ty~~l 102 (250)
...-..+|+.+++.|+ .|++.+||.++.+-++... .-..+.+++.|..++++|+..||+++
T Consensus 41 ~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 41 YNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 7788889999999999 8999999999999877542 34678999999999999999999875
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.91 E-value=0.0021 Score=59.75 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHHC-CCCc---cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDM-GFAR---RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~-~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
+++|.+++++.+.. +++- -...|.++++.---.|.-+...++|++..+. ---...|..|...|.+...++.|.+
T Consensus 1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHH
Confidence 89999999998764 2211 1357888888888888888999999987665 2234678889999999999999999
Q ss_pred HHHHHhhCCC-CCccHHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHH---HHHHHhccC
Q 037164 118 IINMTESNPQ-MVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYR---IWKHYGQTR 180 (250)
Q Consensus 118 ~~~~m~~~~g-~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~ 180 (250)
+++.|.+..| ..--|..|... .+.|..++++...-.. ...+..... +.++.+| +|+-.-...
T Consensus 1552 ll~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1552 LLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP-KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 9999977645 22234444444 5667777777764442 221110111 6677777 444333334
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 181 KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF--GLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 181 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
+.-...|+..|+.-.++|+.+.+.++|++....++.|.- ..|.-.++.=-..|+-+.++.+=.++
T Consensus 1631 PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1631 PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 445678999999999999999999999999888887642 23555555545556655555444333
No 82
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.89 E-value=0.013 Score=50.74 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.+-|..+|...++. ++-+...|......=-..|..+....+|++.... ++-....|-...+.+..+||+..|..++.+
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44445555555443 3445556666666666667777777777776665 555667777777888999999999999998
Q ss_pred HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164 122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF 183 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~ 183 (250)
.... .+.+..+|-+. ++.|..+|.+... ..++.. .|. -.+.++++.+++++... |+
T Consensus 610 af~~--~pnseeiwlaavKle~en~e~eraR~llakar~-~sgTeR---v~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 610 AFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS-ISGTER---VWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcch---hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8654 22344555444 8899999988764 223333 333 66677777777755433 44
Q ss_pred h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 184 N-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 184 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
- ..|..+-..+-..++++.|.+-|..-. +.++..+..|-.|...=-+.|++..|..++++..-
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~-k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGT-KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcc-ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 4 566666678888889999998887654 34566677888888888889999999999987653
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0046 Score=46.66 Aligned_cols=156 Identities=13% Similarity=0.006 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc----HHHHHH
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD----FNLLAV 137 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~ 137 (250)
+..-|--+|.+.|+...|..-++...++ .| +..+|..+-..|-+.|+.+.|.+-|++..+. .|+ ...|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhH
Confidence 3455556677777777777777766554 23 3356666667777777777777777765432 111 111111
Q ss_pred H------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 138 L------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 138 l------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
. .++|...|++......-. --..+|..+.-+..+.|+.+.|+..|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~-------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYG-------------------------EPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCC-------------------------CcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 1 333333333332111101 112456666666667777777777777665
Q ss_pred hCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.. .+....+...+.....+.|++-.|..++++....|
T Consensus 167 ~~-dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 167 EL-DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred Hh-CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 33 22234555666666677777777777776665554
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.87 E-value=0.0016 Score=55.57 Aligned_cols=186 Identities=16% Similarity=0.048 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----CC-CCCchhH-hhhHHHHHhcCChhHHHHHHHHHhhC----CC-C
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEK-----SI-NGDQFTL-GIRPSAYAAASDIHGMDKIINMTESN----PQ-M 128 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----gi-~p~~~ty-~~li~~~~~~~~~~~a~~~~~~m~~~----~g-~ 128 (250)
..|+..|-..|...|++++|..+++.-.+. |. .|.+.+. +.+-..|...+++++|..+|+++... .| .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666778888888888888888765433 21 2333332 23456777778888888887776432 11 1
Q ss_pred Ccc-HHHHHHH----------------HHHHHHHHHHHHhhhhccCCc-----hhhhcchhHHHHHHH-------HHhcc
Q 037164 129 VLD-FNLLAVL----------------LYMAMTMLKKSEGLIATKRNS-----SNAFELKDQLYRIWK-------HYGQT 179 (250)
Q Consensus 129 ~~~-~~~~~~l----------------~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~ 179 (250)
.|. ..+++.| .+.|.++++.......+.... ..++...++.+.+.. ++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122 2444443 344444444411111111100 001113333333333 33322
Q ss_pred CC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 180 RK---VF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN----L--PY-DFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 180 ~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+. +. ..+++.|-..|.+.|++++|++++++....- . .+ .-...+-|-.+|.+.+.+++|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 22 22 3789999999999999999999999976421 2 12 24457788889999999999999998764
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.86 E-value=0.00051 Score=54.75 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=100.0
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHH
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKK 148 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~ 148 (250)
..+...|++++|++++.. + .+.......+..|.+.++++.|.+.++.|.+ +..|....... ...+.-
T Consensus 110 ~i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa----~awv~l 176 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLA----EAWVNL 176 (290)
T ss_dssp HHHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHH----HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHH----HHHHHH
Confidence 456778888888888863 2 3556666778888899999999999988874 34454432211 111111
Q ss_pred HHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 037164 149 SEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDA 228 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 228 (250)
...+ . +.++...+++.+.+..+++..+.|.+..+....|++++|++++.+.... .+-|..+...++-.
T Consensus 177 ~~g~-----e------~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 177 ATGG-----E------KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVC 244 (290)
T ss_dssp HHTT-----T------CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHH
T ss_pred HhCc-----h------hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHH
Confidence 0011 0 2344445555565556677788889999999999999999999997643 34466677778888
Q ss_pred HHhcCCh-hHHHHHHHHHHh
Q 037164 229 HCKNGLL-EKAQSLINHAET 247 (250)
Q Consensus 229 ~~~~g~~-~~a~~~~~~m~~ 247 (250)
....|+. +.+.+++..+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhCCChhHHHHHHHHHHH
Confidence 8888887 667788877654
No 86
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0063 Score=51.59 Aligned_cols=203 Identities=11% Similarity=-0.022 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+.+..++++...+. .++....+..=|.++...|+..+-..+=..|.+. .+-...+|-++---|.-.|..++|.+.|.+
T Consensus 260 f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 260 FKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 77788888888776 5778888888899999999999888888887775 666789999999888889999999999998
Q ss_pred Hhh-CCCCCccHHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-----chhHHHHHHHHHhc---cCCCChhh
Q 037164 122 TES-NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-----LKDQLYRIWKHYGQ---TRKVFNKG 186 (250)
Q Consensus 122 m~~-~~g~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~ 186 (250)
... .+..-|.|.-|... .+.|+..+...-+...-.-.-. .|. ..+....+.+.+.+ ..+-|+..
T Consensus 338 at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 338 ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh
Confidence 632 23677888888877 6777777766654332111101 222 34445555555544 34556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSK--NLPY----DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+-+--.....+.+.+|..+|+..... .+.+ -..+++-|-.+|.+.+.+++|...+++.+.
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777766677788999999999986621 1111 234578888999999999999999998764
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.75 E-value=0.0015 Score=46.37 Aligned_cols=92 Identities=2% Similarity=-0.234 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..... +.+...|..+-.++.+.|++++|...|+..... -+.+...+..+-.++.+.|++++|...|+.
T Consensus 40 ~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 40 YSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677888888877663 457788888889999999999999999987764 234778888888899999999999999998
Q ss_pred HhhCCCCCccHHHHHHH
Q 037164 122 TESNPQMVLDFNLLAVL 138 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l 138 (250)
... ..|+...+...
T Consensus 118 Al~---~~p~~~~~~~~ 131 (144)
T PRK15359 118 AIK---MSYADASWSEI 131 (144)
T ss_pred HHH---hCCCChHHHHH
Confidence 764 34444433333
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00051 Score=53.71 Aligned_cols=181 Identities=9% Similarity=-0.059 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-- 138 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-- 138 (250)
.-|++.+.-..+..+++.|.+++.-..++ .| +....+.|-.+|....++..|..+++++.. ..|...-|..-
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~A 85 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQA 85 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence 34666676677777788888877755544 23 556666777788888888888888887753 23433332222
Q ss_pred --------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHH
Q 037164 139 --------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAE 204 (250)
Q Consensus 139 --------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 204 (250)
...|..++..|.......+... ..| ..+++--.-.++++... -+..+-+..-....+.|+.+.|.
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY-se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKY-SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 5555666555543211111100 000 22222222233344432 23344444445567899999999
Q ss_pred HHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 205 KTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 205 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
+-|+....- |..| ...||.-+ +..+.|+.+.|.++..+++++|+
T Consensus 165 qkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 999998765 4544 56777666 45567899999999999999985
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.74 E-value=0.004 Score=54.24 Aligned_cols=175 Identities=11% Similarity=-0.039 Sum_probs=132.6
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV 137 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 137 (250)
+|--..=..+-..+.+.|-...|..+|+. ...|.-+|.+|+..|+..+|..+..+-.+ -+||...|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHH
Confidence 33333345666778888889999999984 56688899999999999999999887764 4688888888
Q ss_pred H---------HHHHHHHHHHHHhhhhcc-CCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHH
Q 037164 138 L---------LYMAMTMLKKSEGLIATK-RNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAE 204 (250)
Q Consensus 138 l---------~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 204 (250)
+ +++|.++.+..-.+-... .. . .| ..+++.++.+.++.. .+....+|-.+-.+..+.+++..|.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~-~-~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISARAQRSLAL-L-IL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHHHHHhhcc-c-cc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8 899999988766331111 11 0 22 345566666665554 3345588888888889999999999
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 205 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+-|.... .+-+-+...||.+-.+|.+.|+-.+|...+.+..+.
T Consensus 540 ~aF~rcv-tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 540 KAFHRCV-TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHh-hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999887 445556788999999999999999999999988763
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.72 E-value=0.0096 Score=48.92 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=86.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhc-cccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLR-QCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL---- 73 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~---- 73 (250)
.+...|+.+.+.+.+.......+ +...+. .++|.+++++..+. .+.|...++. ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-HLGAFGLGDF 92 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-hHHHHHhccc
Confidence 34445667776666666555422 222111 77788888877765 2334444442 222322
Q ss_pred cCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhh
Q 037164 74 TGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGL 152 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~ 152 (250)
.+..+.+.+.+.. .....|+. .....+...+...|++++|.+.+++.... .+.+...+..+ .
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~l-a------------ 155 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAV-A------------ 155 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHH-H------------
Confidence 3444444444443 11222332 23344556777788888888888877653 11122222111 0
Q ss_pred hhccCCchhhhcchhHHHHHHHHHhccCC-----CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 153 IATKRNSSNAFELKDQLYRIWKHYGQTRK-----VF--NKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
. +|...++.+++...+..... ++ ...|..+...+...|+.++|..++++..
T Consensus 156 -------~-i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 156 -------H-VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred -------H-HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0 11122222333333222111 12 2345567777888888888888888875
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.00053 Score=56.72 Aligned_cols=114 Identities=9% Similarity=-0.038 Sum_probs=92.2
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc---------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG---------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
.++..+...++++.|..+|+++.+..|.....- -.+|.+++++..+. .+-+....+.-...+.+.++++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence 677788888999999999999988755533221 67888999888865 34466667777777899999999
Q ss_pred HHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 80 IDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
|+++.++..+ +.|+. .+|..|..+|.+.|+++.|+-.++.+-..
T Consensus 253 AL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 253 ALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999997766 46666 59999999999999999999999987543
No 92
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.70 E-value=0.00048 Score=47.58 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHH---------------hcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEME---------------EKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~---------------~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
|..++..+|.++++.|+.+....+++..= ...+.|+..+..+++.+|+..+++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56789999999999999999999998641 123567888899999999999999999999999987
Q ss_pred CCCCCccHHHHHHH
Q 037164 125 NPQMVLDFNLLAVL 138 (250)
Q Consensus 125 ~~g~~~~~~~~~~l 138 (250)
..+++.+..+|..+
T Consensus 81 ~Y~I~i~~~~W~~L 94 (126)
T PF12921_consen 81 KYPIPIPKEFWRRL 94 (126)
T ss_pred HcCCCCCHHHHHHH
Confidence 77899888888555
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.67 E-value=0.019 Score=46.09 Aligned_cols=223 Identities=13% Similarity=-0.005 Sum_probs=129.7
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccccccc---------------------------hhHHHHHHHHHHHCCCCccHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG---------------------------VGKAEMVVQEMKDMGFARRTIYC 64 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---------------------------~~~A~~~~~~m~~~~~~p~~~~y 64 (250)
+.+-|.|.+++|+.=|+.+....|+..+-. ...|+.....+++. .+.|+..|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHH
Confidence 467789999999999998877644332222 44555555556554 35666777
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---HHH
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---LYM 141 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---~~~ 141 (250)
-.-..+|...|++..|..=++...+. -..|..+.--+-..+...|+.+..+..+++.. .+.||...+-.. +.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHH
Confidence 77777788888877776655544332 12244555555667777788777777777765 456665544444 444
Q ss_pred HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037164 142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGY---MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218 (250)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 218 (250)
..+.+..|+..+....+ ...++.-...++..+......| ..+=.++...+++.+|++.-.+... --+.|
T Consensus 269 v~K~les~e~~ie~~~~-------t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~-~d~~d 340 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHW-------TECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD-IDPDD 340 (504)
T ss_pred HHHHHHHHHHHHhhhhH-------HHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-cCchH
Confidence 44445555443322221 1112222223333322112222 3344566777788888877777653 12233
Q ss_pred CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 219 FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+.++--=..+|.-.-.++.|..-++...+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66666666677777777777777766654
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.012 Score=47.38 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
-.+++-.|...+|+++|-......++.+..-...|.++|.+++.++.|+.++-++.
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 34666667777888887766554455444445566677888888888888776543
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.0051 Score=51.20 Aligned_cols=131 Identities=8% Similarity=-0.037 Sum_probs=91.2
Q ss_pred hhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhcCChhhHH
Q 037164 15 FEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARR-TIYCYIMMILNYLTGNREKID 81 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~ 81 (250)
-..|.+++|++.+..+....|+-..|. ..+|.+.++++... .|+ ....-.+-.+|.+.|++.+|.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 346788888888888777766666555 78888888888775 344 556666777788888888888
Q ss_pred HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 037164 82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRN 158 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~ 158 (250)
++++.-..+ .+-|+..|..|-.+|...|+..++..-..+.....|- ++.|...+....+....+..
T Consensus 395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~----------~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR----------LEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhccCCcH
Confidence 888876655 5567888888888888888888877777665433233 44555555555554444444
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.61 E-value=0.021 Score=51.04 Aligned_cols=233 Identities=9% Similarity=-0.032 Sum_probs=141.8
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc--ccc----------hhHHHHHHHHHHHCCCCccHHHHH----HHHHHHhhcC
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL--FFG----------VGKAEMVVQEMKDMGFARRTIYCY----IMMILNYLTG 75 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~----------~~~A~~~~~~m~~~~~~p~~~~y~----~li~~~~~~g 75 (250)
+...+.|.+++|.-.|.+..+..|... .|. ...|.+-|.++.+..-+.|..-+- ..+..|...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 344456777777777777666533322 122 667777788877753222222233 3344556666
Q ss_pred ChhhHHHHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------------
Q 037164 76 NREKIDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------------- 138 (250)
Q Consensus 76 ~~~~a~~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------------- 138 (250)
+-+.|.+.+....+ .+=.-+...+++++..|.+...++.|.+.+..+... ..++|..-+.+-
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCC
Confidence 66777777776554 233346677888888888888888888888777663 333333322111
Q ss_pred -------------------HHHHHHHHHHHHhhhh-cc-CCch-----hhhcchhHHHHHHHHHhccCC----CChhhHH
Q 037164 139 -------------------LYMAMTMLKKSEGLIA-TK-RNSS-----NAFELKDQLYRIWKHYGQTRK----VFNKGYM 188 (250)
Q Consensus 139 -------------------~~~a~~~~~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 188 (250)
.+...-++........ +. .... ..|.+.+....+.+++..... -+...|-
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 1111111111111111 11 1100 011166777777777765533 3346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.+-.+|-..|..+.|...|++.... -+-+...-.+|-..+-+.|+.++|.+.+..+.
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8999999999999999999998743 34456677788888999999999999988754
No 97
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00044 Score=57.60 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
..|..++|..|.+.|..+.|..+++.=...|+.||..++|.|++.+.+.|++..|.++...|..++
T Consensus 103 ~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 103 PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 456679999999999999999999998889999999999999999999999999999999887654
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.57 E-value=0.0029 Score=44.15 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|.+.|++....+ +.+...+..+-.+|.+.|+++.|..+++.....+ +.+..++..+-.+|...|++++|.+.|+.
T Consensus 33 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 33 YDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666676666543 4466777788888888888888888888766553 33566777777888888888888888887
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 111 al~ 113 (135)
T TIGR02552 111 AIE 113 (135)
T ss_pred HHH
Confidence 764
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.56 E-value=0.015 Score=43.69 Aligned_cols=143 Identities=8% Similarity=0.005 Sum_probs=103.3
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM 84 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 84 (250)
..+-+|.+.|+++........+... ...|+ .+++...+++..+.+ +.|...|..|-..|...|++++|...+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~ 96 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADP---LHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAY 96 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCc---cccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456889999998876665333221 12333 788888888877764 678899999999999999999999999
Q ss_pred HHHHhcCCCCCchhHhhhHHH-HHhcCC--hhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhh
Q 037164 85 LEMEEKSINGDQFTLGIRPSA-YAAASD--IHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGL 152 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~-~~~~~~--~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~ 152 (250)
+...+.+ +.|...+..+-.+ +...|+ .++|.+++++..+. -+-+...+..+ +++|...++++...
T Consensus 97 ~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 97 RQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9777653 2366777777776 467777 59999999998764 22233333333 88888888888877
Q ss_pred hhccCC
Q 037164 153 IATKRN 158 (250)
Q Consensus 153 ~~~~~~ 158 (250)
..|++.
T Consensus 174 ~~~~~~ 179 (198)
T PRK10370 174 NSPRVN 179 (198)
T ss_pred CCCCcc
Confidence 766665
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.031 Score=45.95 Aligned_cols=213 Identities=14% Similarity=-0.019 Sum_probs=125.3
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccc----cccc------------------------------------------h
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQC----LFFG------------------------------------------V 42 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~----~~y~------------------------------------------~ 42 (250)
++-+.+...|+..+|...|+......|.. ..|. .
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 44456677788888888888766552222 1233 4
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC-CCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN-GDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~-p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+.|+.+-++..+.+ +-++..|----.++...|+++.|.--|++-+. +. -+..+|.-|+.+|...|.+.+|.-+-+.
T Consensus 317 ~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 317 ERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 45555555544432 11222232222445667777777777776544 33 3667788888888888877776555443
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CC-hhhHHHHHHHHHhcC
Q 037164 122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VF-NKGYMTMMGLLLKLD 198 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g 198 (250)
..+. +.-+..+. .++.. .+ .+..+..=+++-++++.... |+ ....+.+-+.+...|
T Consensus 394 ~~~~--~~~sA~~L--------tL~g~---~V--------~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 394 TIRL--FQNSARSL--------TLFGT---LV--------LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHH--hhcchhhh--------hhhcc---ee--------eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 3221 11111111 11100 00 11122223334444433322 32 244556668888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+++..+++.... ..||....+.|-+.+...+.+++|...|...++
T Consensus 453 ~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999998663 688999999999999999999999999988765
No 101
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.55 E-value=0.0057 Score=50.78 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
.-...|.+.++.+.|..+.+++.. -.|-+..+|..|..+|.+.|+++.|.-.++.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~-lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVE-LSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 334556666677777777776663 2333455677777777777777777666554
No 102
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.043 Score=46.06 Aligned_cols=196 Identities=12% Similarity=0.002 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.-.|..-|+...+....++ ..|--+-.+|....+.++..+.|+.-.+-+- -|+.+|-.--..+.-.++++.|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665543322 2266666778888888888888886555322 2566777777777777788888888877
Q ss_pred HhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--C
Q 037164 122 TESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--V 182 (250)
Q Consensus 122 m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~ 182 (250)
... +.|. .+.|..+ +.+++..|++.......... .|+ ..++.+++.+.+..... |
T Consensus 420 ai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 420 AIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---VYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred Hhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 663 3333 3333333 67777777777765533332 454 66666666666644321 1
Q ss_pred C----hhhHHHHHH-H---HHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 183 F----NKGYMTMMG-L---LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 183 ~----~~~~~~li~-~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+ ...-..+|+ + +-=.+++..|+.++++..+-. +-....+.+|-..-.+.|++++|.++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 001111111 1 112278888888888877432 2245678999999999999999999998754
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00026 Score=45.24 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHCCC-CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGF-ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
+.|+.+|+++.+..- .|+...+-.+..+|.+.|++++|.++++. . ++.|+. ...-.+-.+|.+.|++++|.++++
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456666666655432 12445555689999999999999999988 2 233333 333345699999999999999987
Q ss_pred H
Q 037164 121 M 121 (250)
Q Consensus 121 ~ 121 (250)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 5
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.43 E-value=0.02 Score=52.27 Aligned_cols=201 Identities=7% Similarity=-0.050 Sum_probs=118.8
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc------------hhH------------------HHHHHHHHHHCCCC
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGK------------------AEMVVQEMKDMGFA 58 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~------------------A~~~~~~m~~~~~~ 58 (250)
.+++.+...+++++|.++.+.-....|+...+- ..+ ...+...|.+. .
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~--~ 113 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLY--G 113 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhh--h
Confidence 688888899999999999997666666655333 111 12222222221 1
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
-+...+-.|..+|.+.|+.+++..+++++.+.+ +-|+.+.|.+-..|+.. ++++|.+++.+.... -+. ..-
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-~i~--~kq---- 184 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-FIK--KKQ---- 184 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-HHh--hhc----
Confidence 222456666677777777777777777777766 34667777777777777 777777777766443 110 000
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 216 (250)
+.++.+++.++..... . ..+.+.++.+.+... ...-..++-.+-..|.+.++++++..+++........
T Consensus 185 ~~~~~e~W~k~~~~~~-~--------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 185 YVGIEEIWSKLVHYNS-D--------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred chHHHHHHHHHHhcCc-c--------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 2222333333322111 1 112222233333222 1144566777778888999999999999988854333
Q ss_pred CCCcchHHHHHHHH
Q 037164 217 YDFGLPSSLIDAHC 230 (250)
Q Consensus 217 ~~~~~~~~li~~~~ 230 (250)
|.....-|+.+|.
T Consensus 256 -n~~a~~~l~~~y~ 268 (906)
T PRK14720 256 -NNKAREELIRFYK 268 (906)
T ss_pred -chhhHHHHHHHHH
Confidence 5666777777776
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.41 E-value=0.043 Score=49.20 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=54.8
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++.++..+-.|-....+.|..++|..+++...+ +.||. .....+...+.+.+.+++|...+++....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 566788899999999999999999999997766 45655 45566778999999999999999888753
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.40 E-value=0.021 Score=40.51 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC---chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGD---QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~---~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
..|..++..+ ..++...+...++.+... .+.+ ....-.+-..+...|++++|...|+..... . ||....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~--- 84 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELK--- 84 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHH---
Confidence 4555666666 488888888888888775 2222 122223447888889999999999988765 3 332111
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 218 (250)
......+-..+...|++++|...++.... ....
T Consensus 85 ---------------------------------------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~ 117 (145)
T PF09976_consen 85 ---------------------------------------------PLARLRLARILLQQGQYDEALATLQQIPD--EAFK 117 (145)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchH
Confidence 01122345666677777777777765332 2233
Q ss_pred CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 219 FGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
...+..+-+.|.+.|++++|...|++.
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 445666777777778888777777654
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.39 E-value=0.032 Score=52.37 Aligned_cols=197 Identities=13% Similarity=0.047 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCC---CchhHhhhHHHHHhcCChhHHHHHH
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SING---DQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p---~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
.|.++-+..+.. +.+...|-.-|.-+.+.++.++|.+++++.... ++.- -.-.|.++++.-...|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 444443333332 445678999999999999999999999987654 2221 2346777777777788889999999
Q ss_pred HHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--
Q 037164 120 NMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK-- 181 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-- 181 (250)
++..+. +.| ...|..| .++|.++|+.|.+....... .|. +..+.+.+..++++...
T Consensus 1521 eRAcqy--cd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~---vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1521 ERACQY--CDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK---VWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHh--cch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh---HHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 999864 332 2334444 78999999999966652222 333 44444444444433321
Q ss_pred CC--h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 182 VF--N-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 182 ~~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
|. . ....-....-.+.|+.+.+..+|+..... .|--...|+..|+.=.++|+.+.++.+|++....+
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 22 1 23334445567899999999999998854 33346789999999999999999999999998764
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.38 E-value=0.011 Score=44.37 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=93.3
Q ss_pred hccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHH-HhhcCC--hhhH
Q 037164 16 EVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMIL-NYLTGN--REKI 80 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~--~~~a 80 (250)
..++.+++...+...... +.+...|. .++|...|++..+.+ +.+...+..+-.+ |.+.|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 355667777777766555 33444443 899999999998864 4577888888876 477787 5999
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSE 150 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~ 150 (250)
.+++++..+.+-. +...+..+-..+.+.|++++|...|+++... .+|+..-+..+ ++++.-+.|.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i--~~i~~a~~~~ 194 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV--ESINMAKLLQ 194 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH--HHHHHHHHHh
Confidence 9999988876332 6788888889999999999999999999874 56665544333 3444444443
No 109
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.065 Score=44.99 Aligned_cols=184 Identities=16% Similarity=0.073 Sum_probs=117.2
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhh----H----HHHHhcCChhHHHHHHHHHhhCCC
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIR----P----SAYAAASDIHGMDKIINMTESNPQ 127 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~l----i----~~~~~~~~~~~a~~~~~~m~~~~g 127 (250)
+-|-.+|-..+..-...|+.+...++++....+ ++|-. ..|.-. | --=....|.+.+.++++....-
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-- 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-- 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--
Confidence 345566667777777778888888888876654 66622 112111 1 1123467788888888877653
Q ss_pred CCccHHHHHHH-------------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhc---cCCCCh
Q 037164 128 MVLDFNLLAVL-------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQ---TRKVFN 184 (250)
Q Consensus 128 ~~~~~~~~~~l-------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~ 184 (250)
++...+||+-+ +..|.+++......+ |.+. +|. +.++.++.-.+++. ..+.+.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK~K---lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PKDK---LFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cchh---HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 55566777666 666777766665444 3333 333 55555555554444 344555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+|...-..=...|+.+.|..+|+-..+.. .......|-+-|+-=...|.++.|..+++++++.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 888877777788899999999998877431 2222344555566666689999999999988765
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.003 Score=49.57 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=102.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-------------
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV------------- 129 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~------------- 129 (250)
-+..-....+.|+++.|.+-|+.-.+ .|..| ...||.-+ ++.+.|++++|++...++.++ |++
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEG 223 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceecc
Confidence 33333445678999999999988655 57765 56677665 455678999999999988776 554
Q ss_pred ccHH------HH--HHH----------------HHHHHHHHHHHHhhhh-ccCCchhhhc---------chhHHHHHHHH
Q 037164 130 LDFN------LL--AVL----------------LYMAMTMLKKSEGLIA-TKRNSSNAFE---------LKDQLYRIWKH 175 (250)
Q Consensus 130 ~~~~------~~--~~l----------------~~~a~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~ 175 (250)
||.. +. +.+ .+.|.+.+-.|-.+.. .-++ + |.. +.++-.+-++.
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP-v-TLHN~Al~n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP-V-TLHNQALMNMDARPTEGFEKLQF 301 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc-h-hhhHHHHhcccCCccccHHHHHH
Confidence 2211 11 111 3444444444431111 1111 1 333 33444444455
Q ss_pred HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhc-CChhHHHHHHHHH
Q 037164 176 YGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYDFGLPSSLIDAHCKN-GLLEKAQSLINHA 245 (250)
Q Consensus 176 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m 245 (250)
+-...+....||..++-.|||..-++.|-+++.+-.+.-. ..+...|+ |++++.-+ -..++|.+-++.+
T Consensus 302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 5455555568999999999999999999999876332211 22333443 44554443 3566666555443
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.33 E-value=0.013 Score=52.38 Aligned_cols=126 Identities=6% Similarity=-0.071 Sum_probs=98.5
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+-.+.-+.|+.++|+.+++...+..|+..... +++|...+++..... +-+....+.+-.++.+.|+
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcc
Confidence 344566678999999999999988877665333 899999999998864 4456677788888999999
Q ss_pred hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
+++|..+|++.... -+-+..++..+-.++-+.|+.++|...|+..... ..|...-|+..
T Consensus 170 ~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~ 228 (694)
T PRK15179 170 SEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRR 228 (694)
T ss_pred hHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHH
Confidence 99999999998873 3334788888999999999999999999998653 33444554444
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.32 E-value=0.1 Score=46.14 Aligned_cols=231 Identities=10% Similarity=0.025 Sum_probs=143.7
Q ss_pred HhhhccChhHHHHHHHHhhhh-hccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
.|...++.|++ .+...+... .|....+. .--=.-.+.++....+..|...|..|-.+..+.|+++.+.+.|++...-
T Consensus 274 ~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~ 352 (799)
T KOG4162|consen 274 LFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF 352 (799)
T ss_pred ccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 45556666666 333333333 33333333 2222334455555567789999999999999999999999999986543
Q ss_pred CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHHh-------hh
Q 037164 91 SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSEG-------LI 153 (250)
Q Consensus 91 gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~~-------~~ 153 (250)
..-....|+.+-.+|...|.-..|..+++.-.....-++|...+-.. +++++++-.+... ..
T Consensus 353 -~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l 431 (799)
T KOG4162|consen 353 -SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL 431 (799)
T ss_pred -hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh
Confidence 33467789999999999999999999998765431122232222222 3333333333322 11
Q ss_pred hccCCc--hhhhc-----------chhHHHHHHHHHhcc---CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 154 ATKRNS--SNAFE-----------LKDQLYRIWKHYGQT---RK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 154 ~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~---~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
.|.... .++|. +...-.+..+.+++. .+ |+...|-++ -|+..++++.|.+..++...-+.
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~ 509 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNR 509 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcC
Confidence 111110 01332 222223333333333 12 444444444 35667789999999999987777
Q ss_pred CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 216 PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 216 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.-+...|-.|.-.+...+++.+|+.+.+...+
T Consensus 510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 77889999999999999999999999887654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.32 E-value=0.028 Score=43.30 Aligned_cols=159 Identities=7% Similarity=-0.067 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHhc-----
Q 037164 42 VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAAA----- 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~~----- 109 (250)
.++|...|++..... +.+ ..++..+..+|.+.|++++|...++.+.+. .|+.. ++..+-.++.+.
T Consensus 49 ~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 49 YTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHHHHHHHHHhccccc
Confidence 566777777765542 222 246778888999999999999999998764 23222 344444555544
Q ss_pred ---CChhHHHHHHHHHhhCCCCCcc-HHHHHHH--HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--
Q 037164 110 ---SDIHGMDKIINMTESNPQMVLD-FNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK-- 181 (250)
Q Consensus 110 ---~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 181 (250)
|+.+.|.+.++.+... .|+ ...+..+ +......+..-. . .... .|...++..++...++....
T Consensus 126 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~--~-~~a~---~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKE--L-YVAR---FYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHH--H-HHHH---HHHHcCChHHHHHHHHHHHHHC
Confidence 7789999999988653 222 2222111 111111100000 0 0000 22244444555444444311
Q ss_pred ---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 182 ---V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 182 ---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
| ....+..+..++.+.|+.++|..+++.+..
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 236788999999999999999999998874
No 114
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.0051 Score=46.11 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhh-----cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC--------
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-----TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS-------- 110 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~-------- 110 (250)
.-.+.|+.... -..|..+|..++..|.+ .|..+=...-+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 32 ~~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 32 PHEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred chHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33444554422 24688999999999965 4677777888889999999999999999999997632
Q ss_pred --------ChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 111 --------DIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 111 --------~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
+-+-|.+++++|... |+-||..|+..+
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~l 144 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENN-GVMPDKETEQML 144 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 234589999999999 999999998887
No 115
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.0066 Score=48.31 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF---GLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..|..-+.-+.+.|+.+.|..+|+..... +.++. .+|...++-=.+.|+++.+..+.+++.
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555422 22211 245555555555555555555555443
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.29 E-value=0.029 Score=39.03 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHCCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCC
Q 037164 48 VVQEMKDMGFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNP 126 (250)
Q Consensus 48 ~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~ 126 (250)
.|++..+. .| +......+...+...|++++|.+.++.....+ +.+...|..+-.++.+.|++++|..++++....
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34444443 33 34556677777888999999999998877753 346677888888888999999999888876543
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037164 127 QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKT 206 (250)
Q Consensus 127 g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 206 (250)
.|+ +...+..+-..+...|+.+.|...
T Consensus 81 --~p~---------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~ 107 (135)
T TIGR02552 81 --DPD---------------------------------------------------DPRPYFHAAECLLALGEPESALKA 107 (135)
T ss_pred --CCC---------------------------------------------------ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 111 123344455677788888888888
Q ss_pred HHHHHhCCCCCCCcch
Q 037164 207 LRNWTSKNLPYDFGLP 222 (250)
Q Consensus 207 ~~~m~~~~~~~~~~~~ 222 (250)
|+..... .|+...+
T Consensus 108 ~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 108 LDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHh--ccccchH
Confidence 8877653 3444443
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.26 E-value=0.11 Score=45.15 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=116.2
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHH-HHh-hcCCh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMI-LNY-LTGNR 77 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~-~~~-~~g~~ 77 (250)
....+.|.++.|.+-+.......-+...|. +++|..++..+...+ ||..-|+.... ++. -.+..
T Consensus 193 ~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 193 QILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhH
Confidence 456677888888877766655534444444 899999999998874 66666655554 443 33444
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH--HHHHHHHHH----h
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM--AMTMLKKSE----G 151 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~--a~~~~~~~~----~ 151 (250)
+....+|....+. .+-....-..=++..-...-.+...+++..+.+. |+++-......+++. -..++++.. .
T Consensus 271 ~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 271 EALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 4444677665543 1111100000111111122344556666666666 777665555555111 112333332 1
Q ss_pred hhhccCC-----------ch-hhhc---------chhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHH
Q 037164 152 LIATKRN-----------SS-NAFE---------LKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTL 207 (250)
Q Consensus 152 ~~~~~~~-----------~~-~~~~---------~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~ 207 (250)
....... -+ -.|. ..++.+.+.+.+..... |+. ..|..=-..+...|+++.|..++
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 1111100 00 0111 55555555555555443 222 22222225666667777777777
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 208 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.+..+-+ .+|..+=.-=..-..++++.++|..+.....+.|
T Consensus 429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 6665332 2232222223334455667777777766665554
No 118
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.26 E-value=0.0009 Score=51.95 Aligned_cols=70 Identities=14% Similarity=0.005 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC----------------ChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG----------------NREKIDALMLEMEEKSINGDQFTLGIRPSA 105 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g----------------~~~~a~~~~~~m~~~gi~p~~~ty~~li~~ 105 (250)
++=-..-++.|++.|+.-|..+|+.||+.+-+-. +-+-+..++++|+.+|+.||-.+=.+|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 4445566788999999999999999999886533 336789999999999999999999999999
Q ss_pred HHhcCC
Q 037164 106 YAAASD 111 (250)
Q Consensus 106 ~~~~~~ 111 (250)
|++.+-
T Consensus 168 FGr~~~ 173 (406)
T KOG3941|consen 168 FGRWNF 173 (406)
T ss_pred hccccc
Confidence 999885
No 119
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.002 Score=51.25 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=80.1
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhc-cccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+...-+.++++.|.++|....+..+ +...|- .+.|..+|+...+. ++.+...|..-+..+.+.|+
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCc
Confidence 35566777888899999988875421 222332 55588888888765 66777788888888888888
Q ss_pred hhhHHHHHHHHHhcCCCCCc---hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 77 REKIDALMLEMEEKSINGDQ---FTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~---~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.+.|..+|+..... +.++. ..|...+..=.+.|+++.+.++.+++...
T Consensus 86 ~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 86 INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888876655 43333 47888888888888888888888877653
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.077 Score=40.86 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=51.4
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC---ChhHHHHHHHHHHh
Q 037164 173 WKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG---LLEKAQSLINHAET 247 (250)
Q Consensus 173 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~ 247 (250)
...+-+.+..|...|.-+-+.|...|++++|...++++.-. -|.+...|..+-+.+--.| +.+-|.+++.+.++
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344445678899999999999999999999999998832 3334555666666654444 45566666666554
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.12 E-value=0.047 Score=38.72 Aligned_cols=101 Identities=4% Similarity=-0.108 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 46 EMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 46 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+.+|++..+. .|+ .+..+-..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...|+.....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666554 355 35567788899999999999999877652 337788899999999999999999999998753
Q ss_pred CCCCccHHHHHHH---------HHHHHHHHHHHHhhh
Q 037164 126 PQMVLDFNLLAVL---------LYMAMTMLKKSEGLI 153 (250)
Q Consensus 126 ~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~ 153 (250)
-+.+...+..+ .++|...|.......
T Consensus 88 --~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 --DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22233333333 677777777765433
No 122
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.09 E-value=0.007 Score=38.29 Aligned_cols=80 Identities=10% Similarity=-0.068 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
++|...|++..+. .+.+...+..+..++...|++++|.++++...... +.+..++..+...+...|+++.|...++..
T Consensus 17 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 17 DEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444433 22334667777778888888888888888766643 234457777778888888888888888776
Q ss_pred hh
Q 037164 123 ES 124 (250)
Q Consensus 123 ~~ 124 (250)
..
T Consensus 95 ~~ 96 (100)
T cd00189 95 LE 96 (100)
T ss_pred Hc
Confidence 53
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.06 Score=41.73 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCc---cHHHHHHH--HHHHHHHHHHHHhhhhccCCc--hhhhc----chhHHHH
Q 037164 103 PSAYAAASDIHGMDKIINMTESNPQMVL---DFNLLAVL--LYMAMTMLKKSEGLIATKRNS--SNAFE----LKDQLYR 171 (250)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~l--~~~a~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~ 171 (250)
...|+..+++++|.+...... +++. ++.+...+ .+-|.+.+++|......-... ...|- .-+.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 466777777777777765521 2221 11222222 555666666665322100000 00111 2223444
Q ss_pred HHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC-hhHHHHHHHHH
Q 037164 172 IWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL-LEKAQSLINHA 245 (250)
Q Consensus 172 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m 245 (250)
++-.++++ .+|+..+-|....++...|++++|+.++++...+... ++.+..-+|-+-...|. .+-..+.+..+
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 44444443 4466677777777888888888888888887755333 34444444433334443 33344444443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.012 Score=45.19 Aligned_cols=82 Identities=7% Similarity=-0.027 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
...|...|++.... =++|..+||.+--+|.+.|+++.|..-|.+..+-. .-+...+|+|--.+.-.||.+.|..++..
T Consensus 116 ~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 116 FGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred hHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 66677777766654 35677778888888888888888877777655542 22556677777777777888888887777
Q ss_pred HhhC
Q 037164 122 TESN 125 (250)
Q Consensus 122 m~~~ 125 (250)
....
T Consensus 194 a~l~ 197 (257)
T COG5010 194 AYLS 197 (257)
T ss_pred HHhC
Confidence 7655
No 125
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.03 Score=39.71 Aligned_cols=112 Identities=12% Similarity=-0.091 Sum_probs=73.9
Q ss_pred hccChhHHHHHHHHhhhh-----hccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164 16 EVHGVEQAEIYFDNISKL-----LRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEE 89 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~~-----~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 89 (250)
..++.+.+...+...... .++...+. +......++.+. ..+...++..+...|++++|.++.+....
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELY-------LDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 456777777777766655 12222222 444444444443 25777888889999999999999999887
Q ss_pred cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHHH
Q 037164 90 KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNLL 135 (250)
Q Consensus 90 ~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~~ 135 (250)
. -+-|...|..+|.+|...|+...|.++|+.+... -|+.|+..+-
T Consensus 91 ~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 91 L-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp H-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred c-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 6 2347889999999999999999999999987432 3888887663
No 126
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.99 E-value=0.0031 Score=37.87 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=48.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
-..+.+.|++++|...|+...... +-+...+..+-..+.+.|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457889999999999999998554 557888999999999999999999999998754
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.98 E-value=0.011 Score=42.08 Aligned_cols=77 Identities=8% Similarity=0.086 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
.++|...|++.....-.|+ ....-.|...+...|++++|+..++......+ ....+...-+.|.+.|+.++|...|
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555544431111 11222234444555555555555543222211 1223333345555555555555554
Q ss_pred H
Q 037164 120 N 120 (250)
Q Consensus 120 ~ 120 (250)
+
T Consensus 142 ~ 142 (145)
T PF09976_consen 142 Q 142 (145)
T ss_pred H
Confidence 4
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.044 Score=42.42 Aligned_cols=110 Identities=8% Similarity=-0.023 Sum_probs=84.1
Q ss_pred hHhhhccChhHHHHHHHHhhhh---hccccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHH----hhcCChhhH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKL---LRQCLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILN----YLTGNREKI 80 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~---~~~~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~----~~~g~~~~a 80 (250)
..|.+.|++++|.+........ ..+....- ++.|...+++|.+. -+..|-+-|-.++ .-.+....|
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 4678889999999987652221 12222221 88999999999875 3557777666665 345678899
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.=+|++|.+. ..|+..+-|-...++...|++++|..++++...+
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998875 8899999999999999999999999999998665
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.07 Score=41.10 Aligned_cols=60 Identities=7% Similarity=-0.082 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
.-+.++....+.|++..|...|.+...- -+||..+|+.+--+|-+.|+++.|..-|.+..
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 3344555555555555555555544332 33455555555555555555555555555544
No 130
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.97 E-value=0.22 Score=43.40 Aligned_cols=121 Identities=7% Similarity=-0.122 Sum_probs=72.2
Q ss_pred hccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHH
Q 037164 16 EVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDAL 83 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 83 (250)
..|+-++|......-... ..+.++|. .++|+..|......+ +-|...+.-|-..-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 356666666666544333 34444444 566666666666543 44566666666666667777666666
Q ss_pred HHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 84 ~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
-.+..+. .+-.-..|.....++.-.|+...|..++++..+...-.|+...+...
T Consensus 132 r~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 132 RNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 5555443 22234566777777777788888888887776552234555555444
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.97 E-value=0.045 Score=39.14 Aligned_cols=104 Identities=12% Similarity=-0.035 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+++|.++|+.....+ +-+..-|-.|-.+|-..|++++|...+......+. -|+..+-.+-.++...|+.+.|.+.|+.
T Consensus 51 l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 51 FAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887764 35667788888889999999999999998887764 5788899999999999999999999998
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164 122 TESNPQMVLDFNLLAVLLYMAMTMLKKSE 150 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~ 150 (250)
....-+ +...+..+-++|...+..+.
T Consensus 129 Ai~~~~---~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 129 VVRICG---EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHhc---cChhHHHHHHHHHHHHHHhh
Confidence 765413 23445555666666665543
No 132
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.94 E-value=0.048 Score=37.63 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=84.4
Q ss_pred HhcCChhHHHHHHHHHhhCCCC-CccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh
Q 037164 107 AAASDIHGMDKIINMTESNPQM-VLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN 184 (250)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (250)
.-.|.+++..+++.+...+..+ +-+|+.++.+ .-....+++.++.-....+. ..++.+.++...+.... .+.
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi-----s~C~NlKrVi~C~~~~n-~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI-----SKCGNLKRVIECYAKRN-KLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G-----GG-S-THHHHHHHHHTT----
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCc-----hhhcchHHHHHHHHHhc-chH
Confidence 3456777777777776443122 3567777776 33333344444433322222 16677777777765553 334
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
.....-+..+.+.|+-|+-.+++..+.. ...+++...-.+-.||.+-|+..++.+++.++=++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 5567888999999999999999999873 5667788888899999999999999999999988884
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.93 E-value=0.00089 Score=40.67 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=36.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 195 LKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 195 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+.|++++|.++|+++... .+-+..++..+..+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888888877643 333666677777888888888888887776654
No 134
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.90 E-value=0.26 Score=43.08 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=50.2
Q ss_pred chhHHHHHHHHHhccCC----CCh-hhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----c
Q 037164 165 LKDQLYRIWKHYGQTRK----VFN-KGYMTMMGLLLKL---DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----N 232 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~----~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 232 (250)
....+++.++.++.... |.. ..|+.-+.-+.+. .+.+.|.++|++..+ |.+|...- ++.-.|++ .
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK--tiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK--TIYLLYAKLEEEH 599 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH--HHHHHHHHHHHHh
Confidence 55556677777766533 555 6777766555443 368999999999996 66654222 22223332 5
Q ss_pred CChhHHHHHHHHHH
Q 037164 233 GLLEKAQSLINHAE 246 (250)
Q Consensus 233 g~~~~a~~~~~~m~ 246 (250)
|....|..++++..
T Consensus 600 GLar~amsiyerat 613 (835)
T KOG2047|consen 600 GLARHAMSIYERAT 613 (835)
T ss_pred hHHHHHHHHHHHHH
Confidence 77888888887754
No 135
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.1 Score=44.69 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=65.8
Q ss_pred hhcchhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhH
Q 037164 162 AFELKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEK 237 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~ 237 (250)
.|+..++.+++.+.|+.... |+. ..||-|-..+....+-++|..-|++..+ +.|. ++++.-|--+|...|.+++
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHH
Confidence 55577888888888877533 555 8899999999999999999999999875 4454 5666667778999999999
Q ss_pred HHHHHHHHH
Q 037164 238 AQSLINHAE 246 (250)
Q Consensus 238 a~~~~~~m~ 246 (250)
|...|-..+
T Consensus 517 A~~hlL~AL 525 (579)
T KOG1125|consen 517 AVKHLLEAL 525 (579)
T ss_pred HHHHHHHHH
Confidence 998876654
No 136
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.86 E-value=0.006 Score=42.16 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=74.1
Q ss_pred CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhh-hhccCCchhhhcchhHHHHHH
Q 037164 95 DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGL-IATKRNSSNAFELKDQLYRIW 173 (250)
Q Consensus 95 ~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (250)
|..++.++|.++++.|+++...++++..= |+.++... ... ..+.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~---------------~~~~~~~~sp--------------- 47 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKK---------------KEGDYPPSSP--------------- 47 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcc---------------ccCccCCCCC---------------
Confidence 56789999999999999999999986553 55443110 000 111111
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhc
Q 037164 174 KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKN 232 (250)
Q Consensus 174 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 232 (250)
..|+..+..+++.+|+..|++..|.++++..... +++.+..+|..|++=+...
T Consensus 48 ------l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 ------LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred ------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 1289999999999999999999999999998744 7888888999998765543
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.23 Score=41.16 Aligned_cols=183 Identities=11% Similarity=0.060 Sum_probs=109.8
Q ss_pred CccHHHHHHHHHHHhh--cCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-
Q 037164 58 ARRTIYCYIMMILNYL--TGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN- 133 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~- 133 (250)
+|+-.+-..-|.+++. .++...+..++.-.... -+.-|+.....+-+++...|+.++|...|++.+.. .|+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~ 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVE 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---Chhhhh
Confidence 3343444555655544 45555555555544443 35557788889999999999999999999988753 33322
Q ss_pred ---HHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-----chhHHHHHHHHHhccCCCChhhHHHHH---HHHHh
Q 037164 134 ---LLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-----LKDQLYRIWKHYGQTRKVFNKGYMTMM---GLLLK 196 (250)
Q Consensus 134 ---~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~ 196 (250)
.|..+ +++...+...+-.......... ... ...+..+++...+.....+......+| ..+..
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w-fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW-FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh-hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 22222 3333333333321111111100 001 566677777776665554443333333 56778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
.|++++|.--|+..... -+-+..+|.-|+.+|...|.+.+|.-.-+..
T Consensus 347 ~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred ccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 88999988888876532 2346788999999999999998887665543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.80 E-value=0.053 Score=36.49 Aligned_cols=60 Identities=15% Similarity=-0.030 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+...+.+.|+++.|...|+....... +....++..+...+.+.|++++|...++++.+
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3455556666666666666666553211 11233455555556666666666666665554
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.80 E-value=0.25 Score=42.24 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHHHHHHhhhh
Q 037164 77 REKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVLLYMAMTMLKKSEGLIA 154 (250)
Q Consensus 77 ~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l~~~a~~~~~~~~~~~~ 154 (250)
.+...++++..... .+.|+ .+|..+|+.-.+..-++.|..+|.+.++. +..+ +++..+++++ -.+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mE----------y~c- 413 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALME----------YYC- 413 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHH----------HHh-
Confidence 55666666665543 33443 45677777777777788888888888777 4444 5555544411 001
Q ss_pred ccCCchhhhcchhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHH
Q 037164 155 TKRNSSNAFELKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAH 229 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~ 229 (250)
.++-.-+++.++.... +|. .--...++-+...++-..|..+|+.....+..|| ..+|..+|+-=
T Consensus 414 -----------skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 414 -----------SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred -----------cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 1111112222222211 333 3335667777777777778888877776655543 46677777777
Q ss_pred HhcCChhHHHHHHHHHH
Q 037164 230 CKNGLLEKAQSLINHAE 246 (250)
Q Consensus 230 ~~~g~~~~a~~~~~~m~ 246 (250)
+.-|++..+.++-+++.
T Consensus 483 S~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 77777777777766654
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.74 E-value=0.099 Score=43.87 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=14.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLR 208 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 208 (250)
.+...|..|-.+|...|+..+|..-..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 334555555555555555555544443
No 141
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.73 E-value=0.17 Score=38.53 Aligned_cols=169 Identities=12% Similarity=-0.001 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
...|..-+++.++.+ +.+..+|.++-..|-+.|..+.|.+-|+.-.+ +.| +..+.|+.-..+|..|.+++|.+.|+
T Consensus 51 ~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~ 127 (250)
T COG3063 51 YAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRPEEAMQQFE 127 (250)
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCChHHHHHHHH
Confidence 566666666666653 44567778888888888888888888875444 344 34566777777788888888888888
Q ss_pred HHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164 121 MTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM 191 (250)
Q Consensus 121 ~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 191 (250)
+....|....-..+|..+ .+.|.+.|++......... ...-.+.
T Consensus 128 ~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~---------------------------~~~l~~a 180 (250)
T COG3063 128 RALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP---------------------------PALLELA 180 (250)
T ss_pred HHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC---------------------------hHHHHHH
Confidence 877664443333333332 4555555555443221111 2223344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
....+.|+.-.|..+++.....+. ++..+.-..|+---+.|+-+.+.++
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 444455555555555555443332 4444444444444445554444443
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.73 E-value=0.43 Score=43.20 Aligned_cols=57 Identities=14% Similarity=-0.010 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHHHHHH-HHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 193 LLLKLDDVKGAEKTLR-NWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.+...|+.++|.+++. ...+.-..-+...-+--++.+...++|.+-.++-.++..+|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3344556666666663 22233233333444445555566666666666655555543
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.16 Score=39.17 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=88.2
Q ss_pred hhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHH
Q 037164 15 FEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDA 82 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 82 (250)
--+|+...|...++.+....|++.--. .++|+++++.+.+.+ +.|.++|--=+...-..|+.-+|.+
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 346788888888888887754433111 789999999999876 6778888877777777888888888
Q ss_pred HHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 83 LMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 83 ~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
-+.+..+. +.-|...|.-+-..|...|++++|.-+++++...
T Consensus 142 ~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 142 ELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88887766 6679999999999999999999999999998753
No 144
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.72 E-value=0.0049 Score=37.34 Aligned_cols=52 Identities=6% Similarity=0.070 Sum_probs=36.5
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 72 YLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
...|++++|.++|+..... -+-|...+-.+..+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888877665 222556666777888888888888888887754
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.70 E-value=0.048 Score=45.01 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.++|+++|++..+.+ +.+...|..+..+|.+.|++++|...++...+. .| +...|..+-.+|...|++++|...|+
T Consensus 18 ~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 18 FALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 556677777766653 446778888889999999999999999988764 34 56678888899999999999999999
Q ss_pred HHhh
Q 037164 121 MTES 124 (250)
Q Consensus 121 ~m~~ 124 (250)
+...
T Consensus 95 ~al~ 98 (356)
T PLN03088 95 KGAS 98 (356)
T ss_pred HHHH
Confidence 8874
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.68 E-value=0.06 Score=36.24 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKS--INGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
...+..+..++.+.|+++.|...++...... -......+..+..++.+.|+.++|.+.++++...
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3456667788888888888888888876542 1112345666777888888888888888887654
No 147
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.37 Score=41.64 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=38.8
Q ss_pred hhHHHHHHH-H-HhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 185 KGYMTMMGL-L-LKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 185 ~~~~~li~~-~-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
..+.+++.. . ++......|.+++.........-...+--.++......|+++.|.+++.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 444444432 2 3333577888888877643332234566677788888999999999988
No 148
>PLN02789 farnesyltranstransferase
Probab=96.65 E-value=0.27 Score=39.93 Aligned_cols=218 Identities=9% Similarity=-0.068 Sum_probs=119.4
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccc-cccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh-
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR- 77 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~- 77 (250)
.++.+.++.++|..+.+.+....|+- .+|+ .++|+..++++.+.+ +.+..+|+-.-..+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34555667777777777766652222 2222 466777777776653 34455666555555555543
Q ss_pred -hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhcc
Q 037164 78 -EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATK 156 (250)
Q Consensus 78 -~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~ 156 (250)
+++..+++.+.+.+- -|..+|+..--.+.+.|+++++++.++++.+. +. -+...|+.. . -++..+.......
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW~~R---~-~vl~~~~~l~~~~ 196 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAWNQR---Y-FVITRSPLLGGLE 196 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHHHHH---H-HHHHhcccccccc
Confidence 566777766665432 26677777777777777777777777777654 22 223333222 0 0111110000000
Q ss_pred CCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc
Q 037164 157 RNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL----DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN 232 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 232 (250)
.. ....+..+.+.++. .+-+...|+.+...+... ++..+|..++.+.... .+.+......|++.|+..
T Consensus 197 ~~------~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 197 AM------RDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cc------HHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHHhh
Confidence 00 01111111122222 123447788777777763 3446688888776543 344677788899999874
Q ss_pred C------------------ChhHHHHHHHHH
Q 037164 233 G------------------LLEKAQSLINHA 245 (250)
Q Consensus 233 g------------------~~~~a~~~~~~m 245 (250)
. ..++|.++++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 269 LQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 3 236677777776
No 149
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.65 E-value=0.35 Score=42.32 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..|..+-+.|-..|+++.|..+|++...-..+-- ..+|-.--+.=.++.+++.|.++.++..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 5677888889999999999999998764332221 2345444555566778888888877653
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.60 E-value=0.63 Score=43.49 Aligned_cols=235 Identities=15% Similarity=0.092 Sum_probs=138.1
Q ss_pred HhhhccChhHHHHHHHHhhhhhcccccc------c-----------hhHHHHHHHHHHHC----C-CCccHHHHHHHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFF------G-----------VGKAEMVVQEMKDM----G-FARRTIYCYIMMIL 70 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y------~-----------~~~A~~~~~~m~~~----~-~~p~~~~y~~li~~ 70 (250)
.+...|++++|...++......+....+ + +++|...+++.... | ..+-..+.+.+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 3456789999999998865532221111 1 67788887776542 1 11123455666777
Q ss_pred HhhcCChhhHHHHHHHHHh----cCCC--C-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCcc--HHHHHHH--
Q 037164 71 NYLTGNREKIDALMLEMEE----KSIN--G-DQFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLD--FNLLAVL-- 138 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~----~gi~--p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~--~~~~~~l-- 138 (250)
+...|+++.|...+++... .|.. | ....+..+-..+...|++++|...+++.... ....+. ...+..+
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8899999999999887544 2321 1 2233445556777889999999998876432 011122 2222212
Q ss_pred -------HHHHHHHHHHHHhhhhccCCchhhh------------cchhHHHHHHHHHhccCCC---Chh----hHHHHHH
Q 037164 139 -------LYMAMTMLKKSEGLIATKRNSSNAF------------ELKDQLYRIWKHYGQTRKV---FNK----GYMTMMG 192 (250)
Q Consensus 139 -------~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~----~~~~li~ 192 (250)
.+.|...+.+............ .+ ...++.+.+...+.....+ ... .+..+-.
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHS-DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccH-hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6777777777653211110000 00 0223444444444332221 111 1345557
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 193 LLLKLDDVKGAEKTLRNWTSK----NLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
++...|+.++|...+++.... |..+ ...+...+-.++.+.|+.++|...+.+..+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999987643 2222 1345666777888999999999999988753
No 151
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.58 E-value=0.13 Score=45.68 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
|.-.+-.-|-..|+...|+.-|-+. .-|.+-+..|-.++.|++|.++-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 3344445555666676666665432 23455666676777777666654
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.58 E-value=0.011 Score=35.47 Aligned_cols=57 Identities=5% Similarity=-0.069 Sum_probs=45.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+...+.+.|++++|.+.|++..+.. +-+...+..+-.++...|++++|...|++...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999988875 33667778888999999999999999998753
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.57 E-value=0.0021 Score=41.00 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
...+..+-.+|.+.|++++|..+++... .+. .+....-.+..+|.+.|++++|..++++.
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQKLK-LDP-SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHCHT-HHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3445558899999999999999998822 111 23345556688899999999999999863
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.57 E-value=0.013 Score=35.59 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC-ChhHHHHHHHHHhh
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS-DIHGMDKIINMTES 124 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~-~~~~a~~~~~~m~~ 124 (250)
++.+|..+-..+.+.|++++|+..|.+..+.+ +-+...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999987763 336678888889999999 79999999988653
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.36 E-value=0.38 Score=38.32 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-----c-chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF-----G-LPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~-~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..+..+...+.+.|++++|.++|++........+. . .+-..+-.+...|++..|...+++..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556667777778888888888777654332211 1 12233445566777777777777654
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.36 E-value=0.0084 Score=36.41 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG-LLEKAQSLINHAET 247 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 247 (250)
...|..+-..+...|++++|+..|++..... +.+...|..+-.+|...| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888889999999999999999988653 447888999999999999 79999999998875
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.0083 Score=37.48 Aligned_cols=63 Identities=10% Similarity=-0.058 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhc--CCC---CC-chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEK--SIN---GD-QFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--gi~---p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
..+|+.+-..|...|++++|+..|++..+. .+. |+ ..+++.+-.+|...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467899999999999999999999987543 122 33 5678889999999999999999998764
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.28 E-value=0.048 Score=34.23 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 166 KDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 166 ~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
.++..++.+.++... +.+...+..+...+...|++++|.+.++..... .+.+..++..+...+...|+++.|...+
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444455444432 233366777888899999999999999988754 3345568888999999999999999999
Q ss_pred HHHHhc
Q 037164 243 NHAETK 248 (250)
Q Consensus 243 ~~m~~~ 248 (250)
....+.
T Consensus 92 ~~~~~~ 97 (100)
T cd00189 92 EKALEL 97 (100)
T ss_pred HHHHcc
Confidence 887654
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.21 E-value=0.026 Score=34.61 Aligned_cols=56 Identities=20% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..|.+.++++.|.++++.+... .|.++..|...-..|.+.|++++|...|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5678899999999999998854 4447888888889999999999999999988764
No 160
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.02 E-value=0.0069 Score=37.84 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK----NL-PYD-FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+|+.+-..|...|++++|+..|++.... |. .|+ ..+++.+-..|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57888889999999999999999997632 21 222 66788899999999999999999998764
No 161
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.97 Score=39.18 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=39.8
Q ss_pred hhhHHHHH---HHHHhcCCHHHHHHHHHHHHhCC-------CCC------CCc-chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 184 NKGYMTMM---GLLLKLDDVKGAEKTLRNWTSKN-------LPY------DFG-LPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 184 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~-------~~~------~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..+|..+. ..+...|++.+|+++++....-+ -.. +.. +---|.-.+-..|+-++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34554444 45677899999999999872111 111 011 11223345667899999999888877
Q ss_pred hc
Q 037164 247 TK 248 (250)
Q Consensus 247 ~~ 248 (250)
+.
T Consensus 252 ~~ 253 (652)
T KOG2376|consen 252 KR 253 (652)
T ss_pred Hh
Confidence 64
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.92 E-value=0.25 Score=36.15 Aligned_cols=65 Identities=9% Similarity=-0.035 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
....|..+...|...|++++|...|++..+.+-.|. ...|..+...+.+.|++++|...+++...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999998776533322 36788888999999999999999998765
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.85 E-value=0.13 Score=36.80 Aligned_cols=83 Identities=4% Similarity=-0.206 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 165 LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
..|+++.+...++.... .+...|..|--++-..|++.+|+..|....... +-|+..+-.+-.++...|+.+.|.+.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555555554433 444667777788888899999999999988655 46788888888999999999999999
Q ss_pred HHHHHhc
Q 037164 242 INHAETK 248 (250)
Q Consensus 242 ~~~m~~~ 248 (250)
|+..+..
T Consensus 126 F~~Ai~~ 132 (157)
T PRK15363 126 LKAVVRI 132 (157)
T ss_pred HHHHHHH
Confidence 9877653
No 164
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.86 Score=37.17 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhH-HHHHhcCChhHHHHHHHHH
Q 037164 67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP-SAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li-~~~~~~~~~~~a~~~~~~m 122 (250)
+..+++..|++.+|+++|-......++ |..+|.+++ .+|.+.+..+.|..++-.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 445566666666677666655544444 445554443 6666666666666655333
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.76 E-value=0.27 Score=42.78 Aligned_cols=114 Identities=6% Similarity=-0.008 Sum_probs=71.9
Q ss_pred hhHHHHHHHHhhhhhccc-cccc-------------------hhHHHHHHHHHHHC-CCCccHHHHHHHHHHHhhcCChh
Q 037164 20 VEQAEIYFDNISKLLRQC-LFFG-------------------VGKAEMVVQEMKDM-GFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 20 ~~~a~~~f~~~~~~~~~~-~~y~-------------------~~~A~~~~~~m~~~-~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
.+.|..+|++..+..|+- ..|. +..+.+..++.... ....+..+|.++--.+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 667888888877765543 1222 22333333332221 13345567777766666778888
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
+|...+++..+.+ |+...|..+-..+...|+.++|...+++...-....|+.+.+
T Consensus 438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 438 EAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 8888888776654 677888888888888888888888888765321333444333
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.71 E-value=0.73 Score=35.89 Aligned_cols=60 Identities=7% Similarity=-0.038 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSK--NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+..-|.+.|....|..=++.+... +.+......-.|+.+|.+.|..++|..+...+..+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~n 241 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAAN 241 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 4456789999999999999998853 33334555668889999999999999988776544
No 167
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.69 E-value=0.04 Score=39.07 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
....++..+...|+.+.|..+.+.+... -|.|...|..+|.+|...|+...|.++++++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455667777788888888888887743 455777888888888888888888888877653
No 168
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=1.3 Score=41.26 Aligned_cols=177 Identities=12% Similarity=0.036 Sum_probs=101.1
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH---
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEK--SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN--- 133 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--- 133 (250)
.|+..-+....++...+.+.+..++++.+.-. -+.-+...-|.||-.-.+ -|..++.+.++++..- -.|+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny--Da~~ia~ia 1058 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY--DAPDIAEIA 1058 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC--CchhHHHHH
Confidence 35556677778888888888888888875432 122222223444444333 4556677777777653 223322
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCC--------ch-h----------hhc-------chhHHHHHHHHHhccCCCChhhH
Q 037164 134 LLAVLLYMAMTMLKKSEGLIATKRN--------SS-N----------AFE-------LKDQLYRIWKHYGQTRKVFNKGY 187 (250)
Q Consensus 134 ~~~~l~~~a~~~~~~~~~~~~~~~~--------~~-~----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 187 (250)
.-+.++++|..+|++.......-.. +- . .|. +.+.+.++.+.+-.. .|+..|
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y 1136 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNY 1136 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHH
Confidence 2223388888888776522110000 00 0 010 222233333322211 456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
..+|....+.|.+++-.+.+...+++...|. +=+.||-+|++.+++.+.+.++
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence 8888888888888888888876666655554 4456888888888887777664
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.64 E-value=0.16 Score=42.00 Aligned_cols=88 Identities=6% Similarity=-0.097 Sum_probs=69.4
Q ss_pred HhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
.+.+.|++++|.++|++.....|+. ..|. .++|+..+++..+.+ +.+...|..+-.+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 4567899999999999988774443 3333 899999999998864 45678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHhhhH
Q 037164 81 DALMLEMEEKSINGDQFTLGIRP 103 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li 103 (250)
...|++..+ +.|+......++
T Consensus 90 ~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHH--hCCCCHHHHHHH
Confidence 999998776 456665555554
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.50 E-value=1.1 Score=36.45 Aligned_cols=75 Identities=15% Similarity=-0.028 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 165 LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
..+....+-++-++...|+...|...|.+|+..+++++-+++-.. .. ++.-|...+.+|.+.|+..+|..++.+
T Consensus 189 ~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 189 EMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 455555666665555558889999999999999999987775432 22 358899999999999999999888776
Q ss_pred H
Q 037164 245 A 245 (250)
Q Consensus 245 m 245 (250)
+
T Consensus 263 ~ 263 (319)
T PF04840_consen 263 I 263 (319)
T ss_pred C
Confidence 4
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.41 E-value=0.075 Score=32.48 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=46.8
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
..|.+.+++++|.++++.+... -+.+...|...-.++.+.|++++|.+.|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5688899999999999998876 2336677777889999999999999999988653
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.31 E-value=0.74 Score=33.40 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
....|..+...+...|++++|...|+......-.| ...+|..+-..+...|++++|.+.++....
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667888888888999999999999876543222 235788888999999999999999988764
No 173
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.18 E-value=0.29 Score=31.74 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=49.3
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHH
Q 037164 76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKK 148 (250)
Q Consensus 76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~ 148 (250)
|.=++.+-++.+-..++.|++....+-+++|-+.+|+..|.++|+-.+.+ +..+..+|..++++..-.+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lqeikp~l~E 92 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQEIKPTLKE 92 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHHHHhHHHHH
Confidence 33356666777777888888888888888888888888888888877643 222444665555544444444
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.10 E-value=0.62 Score=40.95 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=11.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037164 192 GLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~ 211 (250)
.+|.+.|+-.+|..+++++.
T Consensus 825 kAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhh
Confidence 35555555566666655554
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.07 E-value=0.38 Score=35.11 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHCCCCc--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChh
Q 037164 42 VGKAEMVVQEMKDMGFAR--RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIH 113 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~ 113 (250)
.++|...|++..+.+-.+ ....+..+..+|.+.|++++|...+.+..+. .| +...+..+...+...|+..
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChH
Confidence 788888888887643222 2468899999999999999999999987764 34 4556666777887777643
No 176
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.06 E-value=0.43 Score=43.09 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
|-+++...|-.|++++|-++-++-. |....-.|-+.|-..|++.+|..+|.+..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455556666666666666655422 44555567777777777777777776654
No 177
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.05 E-value=2.5 Score=37.96 Aligned_cols=82 Identities=5% Similarity=-0.036 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
..++...+++..+.+- .|+.+---+---|+..++.+.|+...++..+.+=..+...|..|.-.+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6777888888877642 222222223334677888999999999888876666888888888888888999998888876
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 539 al~ 541 (799)
T KOG4162|consen 539 ALE 541 (799)
T ss_pred HHH
Confidence 544
No 178
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.99 E-value=1.3 Score=41.09 Aligned_cols=59 Identities=5% Similarity=-0.120 Sum_probs=38.3
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKI 118 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~ 118 (250)
+.+...+..|+..|...+++++|.++.++-.+ ..|+. ..|-.+-..+...++.+.+.-+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 34567788888888888888888888885444 33443 2333333366667777666666
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.95 E-value=0.55 Score=32.15 Aligned_cols=79 Identities=11% Similarity=-0.093 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC---c-hhHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD---Q-FTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~---~-~ty~~li~~~~~~~~~~~a 115 (250)
.++|+.+|++-.+.|+... ...+-.+-..+...|++++|..++++..... |+ . .....+--++...|+.++|
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555555554433 2334445555666666666666666654431 22 1 1111122355556666666
Q ss_pred HHHHHHH
Q 037164 116 DKIINMT 122 (250)
Q Consensus 116 ~~~~~~m 122 (250)
.+++-..
T Consensus 95 l~~~l~~ 101 (120)
T PF12688_consen 95 LEWLLEA 101 (120)
T ss_pred HHHHHHH
Confidence 6665443
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.93 E-value=0.56 Score=38.10 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=68.3
Q ss_pred hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHH
Q 037164 97 FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY 176 (250)
Q Consensus 97 ~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (250)
.+.+..|.-+...|+...|.++-++. ++ ||..-|-.-+. ++...++.+++.++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~---------------------aLa~~~~w~eL~~fa 231 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIK---------------------ALAENKDWDELEKFA 231 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHH---------------------HHHhcCCHHHHHHHH
Confidence 34555577777788887777775554 23 33322211000 222333444444444
Q ss_pred hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 177 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
+. ..++..|-.++..|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+.--
T Consensus 232 ~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 232 KS--KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred hC--CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 43 245688999999999999999998888762 23667888888888888876643
No 181
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.88 E-value=0.15 Score=42.79 Aligned_cols=66 Identities=8% Similarity=-0.039 Sum_probs=55.5
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+.+...++.+-.+|.+.|++++|...|++-.+ +.|+.. +|..+-.+|.+.|++++|...+++....
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999997555 457653 5899999999999999999999998764
No 182
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.87 E-value=0.21 Score=32.72 Aligned_cols=69 Identities=7% Similarity=-0.016 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS 149 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~ 149 (250)
+..+-++.+-..++.|++.+..+.+.+|.+.+|+..|.++|+-++.. +.+...+|..++++..-+++++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqElkPtl~EL 96 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQELKPTLEEL 96 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHHHhhHHHHh
Confidence 56666677777788888888888888888888888888888887654 3333336666655555554443
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.87 E-value=0.51 Score=34.25 Aligned_cols=78 Identities=13% Similarity=0.065 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHCCCCc--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHH-------hcCC
Q 037164 42 VGKAEMVVQEMKDMGFAR--RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYA-------AASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~-------~~~~ 111 (250)
.++|...|++.....-.| ...+|..+-.+|...|++++|...++...+. .| ...+++.+...+. +.|+
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~ 128 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGD 128 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHccc
Confidence 788888888887653222 2358899999999999999999999987764 33 3455667777777 7778
Q ss_pred hhHHHHHHHH
Q 037164 112 IHGMDKIINM 121 (250)
Q Consensus 112 ~~~a~~~~~~ 121 (250)
++.|...+++
T Consensus 129 ~~~A~~~~~~ 138 (168)
T CHL00033 129 SEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHH
Confidence 7766555554
No 184
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.78 E-value=0.9 Score=36.50 Aligned_cols=94 Identities=11% Similarity=0.165 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHCC---CCccHHHHHHHHHHHhhcCCh----hhHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCC--
Q 037164 42 VGKAEMVVQEMKDMG---FARRTIYCYIMMILNYLTGNR----EKIDALMLEMEEKSINGDQF-TLGIRPSAYAAASD-- 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~---~~p~~~~y~~li~~~~~~g~~----~~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~-- 111 (250)
+.+|.++|+.|++.. -.++-.++.+|+.. ...++ +.++.+++.+.+.|+..+.. .+.+-|-+++...+
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 666666666665543 12344455555443 33332 34556666666666655433 22222222222221
Q ss_pred -hhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 112 -IHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 112 -~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
+.++.++++.+++. |+++....|..+
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHH
Confidence 23455556666665 666555555544
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.67 E-value=0.59 Score=37.01 Aligned_cols=96 Identities=14% Similarity=-0.029 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.++|+..|.+..+. .+-|++-|..--.+|++.|.++.|.+=.+.-.+ +.|. ..+|..|=.+|...|++++|.+-|+
T Consensus 97 Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 97 YQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 89999999999987 356788888899999999999999887774443 4443 3678889999999999999999998
Q ss_pred HHhhCCCCCccHHHHHHHHHHHH
Q 037164 121 MTESNPQMVLDFNLLAVLLYMAM 143 (250)
Q Consensus 121 ~m~~~~g~~~~~~~~~~l~~~a~ 143 (250)
+.. .+.|+..+|-.-++.|.
T Consensus 174 KaL---eldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 174 KAL---ELDPDNESYKSNLKIAE 193 (304)
T ss_pred hhh---ccCCCcHHHHHHHHHHH
Confidence 877 57888887733333333
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.67 E-value=0.79 Score=38.56 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=86.3
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCCch------hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-------
Q 037164 72 YLTGNREKIDALMLEMEEKSINGDQF------TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------- 138 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~gi~p~~~------ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------- 138 (250)
-+.+++.++.++|...-.. +..+.+ .-+-+|++|. ..+++.+...+....+..|-.+-...|-.+
T Consensus 17 qkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 3566777787777776544 222222 2244566666 456777777777775544555555555555
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
..+|.+.|............ . .+..... +|-..=+..++++.+.|.+.++..++++|...=.
T Consensus 95 ~~kal~~ls~w~~~~~~~~~---~------------~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTES---P------------WLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhccccc---c------------hhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 66666666665544322222 0 0111111 2233346778999999999999999999875544
Q ss_pred C----CCCcchHHHHHHHHhc
Q 037164 216 P----YDFGLPSSLIDAHCKN 232 (250)
Q Consensus 216 ~----~~~~~~~~li~~~~~~ 232 (250)
+ .++.+|+.++-.+.++
T Consensus 160 krE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHH
Confidence 4 7888898866666554
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.63 E-value=0.76 Score=41.65 Aligned_cols=60 Identities=5% Similarity=-0.068 Sum_probs=41.5
Q ss_pred cHHHHHHHHH--HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 60 RTIYCYIMMI--LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 60 ~~~~y~~li~--~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
|..|-..+++ .|.-.|+.+.|.+-++.++ +...|..|.+.|.+..++|-|.-++.-|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~a 786 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA 786 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhh
Confidence 4556666664 3667788888877777555 3567888888888888888777776666443
No 188
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=1.6 Score=33.72 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=43.0
Q ss_pred HhhhccChhHHHHHHHHhhhh-hccccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLE 86 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 86 (250)
+|-...++++|-..+.+..+. -.|...|. .+.|.-+.++|.+. +--+.-|+--+.+|...|.++.|---++.
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 444556666666655555433 34444555 66666677777653 22344567777777777777766555554
No 189
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.50 E-value=2.9 Score=36.16 Aligned_cols=166 Identities=9% Similarity=0.030 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHC-CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 43 GKAEMVVQEMKDM-GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 43 ~~A~~~~~~m~~~-~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
+..-+.+++.+.. ...|+ .+|-.+|+.--|..-++.|..+|.+..+.+..+ .+++++++|.-|| ++|.+.|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 3444455555443 23444 678888888888888999999999999998888 8999999999888 788999999999
Q ss_pred HHhhCCCCCccHHH-HHHH------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHH
Q 037164 121 MTESNPQMVLDFNL-LAVL------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGL 193 (250)
Q Consensus 121 ~m~~~~g~~~~~~~-~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 193 (250)
--....|-.|-... |... -..+..+|++......+- ......|..+|+-
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~------------------------~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA------------------------DKSKEIWDRMLEY 481 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh------------------------hhhHHHHHHHHHH
Confidence 64433255444221 1000 222333333333111000 0234678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC---CCCCCcchHHHHHHHHhcCC
Q 037164 194 LLKLDDVKGAEKTLRNWTSKN---LPYDFGLPSSLIDAHCKNGL 234 (250)
Q Consensus 194 ~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~ 234 (250)
=++.|++..+.++=+++...- ..+....-..+++-|--.+.
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 888888888888877765321 22222334444555544443
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.46 E-value=3.1 Score=36.36 Aligned_cols=140 Identities=11% Similarity=-0.043 Sum_probs=85.3
Q ss_pred cCCCCCchhHhhhHHHHHhcCC-----hhHHHHHHHHHhhCCCCCccH-HHHHHHHHHHHHHHHHHHhhhhccCCchhhh
Q 037164 90 KSINGDQFTLGIRPSAYAAASD-----IHGMDKIINMTESNPQMVLDF-NLLAVLLYMAMTMLKKSEGLIATKRNSSNAF 163 (250)
Q Consensus 90 ~gi~p~~~ty~~li~~~~~~~~-----~~~a~~~~~~m~~~~g~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (250)
.+.+.|...|...+.+.....+ ...|..+|++..+ ..|+. ..+..+ +.-. .......+ .
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~l---a~~~--~~~~~~~~--~----- 395 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEK---ALAD--IVRHSQQP--L----- 395 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHH---HHHH--HHHHhcCC--c-----
Confidence 3456677888888877654332 6678888888764 34542 222221 0000 00011111 0
Q ss_pred cchhHHHHHHHHHhc---c--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164 164 ELKDQLYRIWKHYGQ---T--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA 238 (250)
Q Consensus 164 ~~~~~~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 238 (250)
....+..+.+.... . .+.+...|.++--.....|++++|...+++..... |+...|..+-..|...|+.++|
T Consensus 396 -~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 396 -DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred -cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHH
Confidence 11222233333222 1 12334667666555666799999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHh
Q 037164 239 QSLINHAET 247 (250)
Q Consensus 239 ~~~~~~m~~ 247 (250)
...+++..+
T Consensus 473 ~~~~~~A~~ 481 (517)
T PRK10153 473 ADAYSTAFN 481 (517)
T ss_pred HHHHHHHHh
Confidence 999988764
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.44 E-value=0.54 Score=37.47 Aligned_cols=113 Identities=14% Similarity=0.028 Sum_probs=67.9
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhccc-cccchhHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHhhcCChhhHHHH
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQC-LFFGVGKAEMVVQEMKDM----GFA-RRTIYCYIMMILNYLTGNREKIDAL 83 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~~~~A~~~~~~m~~~----~~~-p~~~~y~~li~~~~~~g~~~~a~~~ 83 (250)
.++.|.+.|++..|-+.+..+-....+. .. .++|.+.|++..+. |-+ .-..++..+...+.+.|++++|.++
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566777777777777777766542222 11 45555555554332 211 1135567778888999999999999
Q ss_pred HHHHHhcCCCC-----Cch-hHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 84 MLEMEEKSING-----DQF-TLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 84 ~~~m~~~gi~p-----~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
|++....-... +.. .|-..+-++...||...|.+.+++...
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99876643322 222 223334466778899999999998764
No 192
>PLN02789 farnesyltranstransferase
Probab=94.41 E-value=2.3 Score=34.64 Aligned_cols=193 Identities=7% Similarity=-0.130 Sum_probs=103.3
Q ss_pred cChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCCCCc
Q 037164 18 HGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQ 96 (250)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~p~~ 96 (250)
+++.+|..+|..+..... ..++|+.+..+..+.+ +-+..+|+..-.++...| ++++++.+++.+.+.+- .+.
T Consensus 34 ~~~~~a~~~~ra~l~~~e-----~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-kny 106 (320)
T PLN02789 34 PEFREAMDYFRAVYASDE-----RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNY 106 (320)
T ss_pred HHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cch
Confidence 555666666666554311 1467777777776652 234455665555666666 56778888877766522 244
Q ss_pred hhHhhhHHHHHhcCCh--hHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcc
Q 037164 97 FTLGIRPSAYAAASDI--HGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFEL 165 (250)
Q Consensus 97 ~ty~~li~~~~~~~~~--~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
.+|+..--.+.+.|+. +++..+++++... -+-+...|+.. ++++++.+.++.+..
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------------ 172 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------------ 172 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------------
Confidence 5566554444455542 5566666666542 12233333322 333333333333222
Q ss_pred hhHHHHHHHHHhccCCCChhhHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC----C
Q 037164 166 KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL---DD----VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG----L 234 (250)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~ 234 (250)
+.+...|+...-.+.+. |. .+.+.....++... .+-|...|+-+-..+...+ +
T Consensus 173 ---------------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 173 ---------------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred ---------------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCccccc
Confidence 12334454444333333 22 24566666566533 4567888998888887733 3
Q ss_pred hhHHHHHHHHHHh
Q 037164 235 LEKAQSLINHAET 247 (250)
Q Consensus 235 ~~~a~~~~~~m~~ 247 (250)
..+|.+++.+..+
T Consensus 237 ~~~~~~~~~~~~~ 249 (320)
T PLN02789 237 DPEVSSVCLEVLS 249 (320)
T ss_pred chhHHHHHHHhhc
Confidence 4567777776554
No 193
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.28 E-value=2.9 Score=35.43 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcC-CCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKS-INGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
..+|-..|+.-.+..-++.|..+|-+..+.| +.+++..|+++|..++ .||...|-++|+--.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl 459 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGL 459 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHH
Confidence 3667888888888888999999999999999 6689999999998887 788999999998643
No 194
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=2 Score=36.82 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=90.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccc----hhHHHHHHHHHHHCCCCccH-HHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG----VGKAEMVVQEMKDMGFARRT-IYCYIMMILNYLTGNREKIDALMLEM 87 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~----~~~A~~~~~~m~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m 87 (250)
+|.+.++.+.|.++|.+......++...+ .+++....+...-.+ |.. .-.-.=-+.+-+.|++..|.+.+.++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 67778999999999998777655544444 555555555554433 332 11222256678899999999999998
Q ss_pred HhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH---H-----HHH--HHHHHHHHHHHHh
Q 037164 88 EEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL---L-----AVL--LYMAMTMLKKSEG 151 (250)
Q Consensus 88 ~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~---~-----~~l--~~~a~~~~~~~~~ 151 (250)
..++ +-|...|+..--||.+.|.+..|++--+...+ ..|++.. . ..+ +++|.+.|.+...
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876 55788999999999999999999887655443 2344321 1 111 6667766666553
No 195
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.21 E-value=2.4 Score=34.69 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY---DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
....+|..+...+.+.|.++.|...+.++...+... ++.+.-.-...+...|+-++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334788899999999999999999999988644222 445555566778888999999999888776
No 196
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.10 E-value=2.5 Score=33.97 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhH--HHHHhcCC----hhHHHHHHHHHhhC
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRP--SAYAAASD----IHGMDKIINMTESN 125 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li--~~~~~~~~----~~~a~~~~~~m~~~ 125 (250)
+.+..+++.|++.|+.-+..+|-+-. .......+ ..+|..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 45677777888888887777775532 22222222 44577777777654
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.07 E-value=0.38 Score=40.47 Aligned_cols=65 Identities=14% Similarity=-0.045 Sum_probs=53.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF----GLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+...|+.+-.+|.+.|++++|...|++... ..|+. .+|..+-.+|...|+.++|...+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3447888899999999999999999998764 34543 35889999999999999999999988763
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.93 E-value=3.5 Score=34.94 Aligned_cols=83 Identities=10% Similarity=-0.004 Sum_probs=59.5
Q ss_pred HHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 25 IYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 25 ~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
++=+.|+..+.++.+|- .++..+++++|... ++--..+|..-|++=....++..++.+|.+.....+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 55566666666677666 77778888888764 4555678888888888888999999999988776554
Q ss_pred CCchhHhhhHHHHHhcC
Q 037164 94 GDQFTLGIRPSAYAAAS 110 (250)
Q Consensus 94 p~~~ty~~li~~~~~~~ 110 (250)
...|...++--.+..
T Consensus 109 --ldLW~lYl~YIRr~n 123 (660)
T COG5107 109 --LDLWMLYLEYIRRVN 123 (660)
T ss_pred --HhHHHHHHHHHHhhC
Confidence 566666555544443
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.83 E-value=1.2 Score=30.56 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=48.9
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 67 MMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+-.++-..|+.++|..++++-...|..... ..+-.+-+++...|++++|..++++....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999887653 34556679999999999999999988654
No 200
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.80 E-value=1.6 Score=30.45 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=65.6
Q ss_pred ccChhHHHHHHHHhhhhhccccccc--------hhHHHHHHHHHHHCCCCccHHH--------------------HHHHH
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFG--------VGKAEMVVQEMKDMGFARRTIY--------------------CYIMM 68 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~--------~~~A~~~~~~m~~~~~~p~~~~--------------------y~~li 68 (250)
.|.+++..++..+.... .+..-|| ...+..+|+.+..-|---|... .+.-+
T Consensus 15 dG~V~qGveii~k~v~S-sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~AL 93 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS-SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLAL 93 (161)
T ss_dssp TT-HHHHHHHHHHHHHH-S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHH
T ss_pred hchHHHHHHHHHHHcCc-CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHH
Confidence 47778888888776654 3444555 4445556665555442223222 24444
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~ 129 (250)
......|+-+.-.++..++.. +=+|++...-.+-++|.+.|+..++.+++++.-.. |++
T Consensus 94 d~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 555666666777777777654 34567777778889999999999999999999887 774
No 201
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=3.4 Score=38.63 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF 132 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 132 (250)
..|+.+-.+-.+.|...+|.+-|- + ..|+..|..+|+...++|.+++-.+.+...++. .-+|..
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyi--k----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i 1168 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYI--K----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI 1168 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHH--h----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc
Confidence 456666666666666666655443 1 136777888888888888888888777766665 555543
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.54 E-value=1.7 Score=34.30 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC---chhHhhhHHHHHhcCChhH
Q 037164 42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD---QFTLGIRPSAYAAASDIHG 114 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~---~~ty~~li~~~~~~~~~~~ 114 (250)
.++|...|+.+.+.. |+ ...+--+-.+|...|++++|...|+.+... .+-+ ...+-.+..++...|+.++
T Consensus 159 y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 159 QDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred HHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 355666666665532 22 235667778888899999999999988754 2222 2333344567778899999
Q ss_pred HHHHHHHHhhC
Q 037164 115 MDKIINMTESN 125 (250)
Q Consensus 115 a~~~~~~m~~~ 125 (250)
|.++|++....
T Consensus 236 A~~~~~~vi~~ 246 (263)
T PRK10803 236 AKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 203
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.49 E-value=4.7 Score=35.02 Aligned_cols=65 Identities=17% Similarity=-0.017 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+|......|--.|--.|++++|.+.|+.... -.|.|..+||.|-..++...+.++|..-+++.++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~-v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ-VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHh-cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 6677788888888889999999999999884 3566889999999999999999999999998875
No 204
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.37 E-value=6.9 Score=36.58 Aligned_cols=80 Identities=10% Similarity=-0.029 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHH--HHHHhcCChhHHH
Q 037164 165 LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI--DAHCKNGLLEKAQ 239 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~a~ 239 (250)
+.++...+...++...+ .|...|..+.++|...|.+..|.++|.+... +.|+ .+|...- -.-+..|.+.+|.
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHHHH
Confidence 66667777666666543 4558888999999999999999999988653 4443 2222222 2345678888888
Q ss_pred HHHHHHHh
Q 037164 240 SLINHAET 247 (250)
Q Consensus 240 ~~~~~m~~ 247 (250)
..+.....
T Consensus 651 d~l~~ii~ 658 (1238)
T KOG1127|consen 651 DALGLIIY 658 (1238)
T ss_pred HHHHHHHH
Confidence 77776553
No 205
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.30 E-value=0.67 Score=30.15 Aligned_cols=60 Identities=2% Similarity=-0.104 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS 104 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~ 104 (250)
++.+-++.+...++.|++.+..+-+.+|-|.+|+..|.++|+-.+.. +..+...|.-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 34445567777789999999999999999999999999999988754 2224446655543
No 206
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.27 E-value=3.4 Score=32.80 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 165 LKDQLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
+...+.++.+.+... ..++..+-..+|..+++.++...-.++|...... +..-|..-|..+|+.-...|+.. +
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~----~ 256 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE----V 256 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH----H
Confidence 455666666666544 3377888899999999999999999999987755 66779999999999999999955 5
Q ss_pred HHHHHhcCC
Q 037164 242 INHAETKKG 250 (250)
Q Consensus 242 ~~~m~~~g~ 250 (250)
.++++..|+
T Consensus 257 ~~kiI~~Gh 265 (292)
T PF13929_consen 257 MRKIIDDGH 265 (292)
T ss_pred HHHHhhCCC
Confidence 555555553
No 207
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.22 E-value=0.66 Score=30.48 Aligned_cols=59 Identities=2% Similarity=-0.115 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164 45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS 104 (250)
Q Consensus 45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~ 104 (250)
..+-++.+...++.|++.+..+.+.+|-|.+++..|.++|+-.+.. +.+....|.-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 3344566777789999999999999999999999999999998875 3333336766654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=2.2 Score=33.43 Aligned_cols=76 Identities=12% Similarity=-0.116 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
.+.+.+..++.-.|.+.-....+.+..+..-+-++..-+.|.+.-.+.||.+.|...|+...+. .-..|..+++.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHH
Confidence 3456677777778888888888888888765667788888888889999999999999987655 333444444333
No 209
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.03 E-value=0.22 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=14.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHH
Q 037164 222 PSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 222 ~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
|+.|-..|.+.|++++|..++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 210
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.97 E-value=2.6 Score=30.65 Aligned_cols=38 Identities=3% Similarity=0.033 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHH
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~ 118 (250)
.++++-+.+.|++|+...|..+|+.+.+.|.+....++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445555566666666666667777766665544443
No 211
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=1.1 Score=35.85 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHCC---CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHH
Q 037164 42 VGKAEMVVQEMKDMG---FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~---~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~ 118 (250)
++.++.++-+++..- ..|+...+ ..+.. +-.-++++++.++..=.+.|+-||.++++.+|+.+.+.+++.+|.++
T Consensus 80 idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~v 157 (418)
T KOG4570|consen 80 IDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASV 157 (418)
T ss_pred hhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHH
Confidence 788888888887652 33332222 22332 23446889999999888999999999999999999999999999998
Q ss_pred HHHHhhC
Q 037164 119 INMTESN 125 (250)
Q Consensus 119 ~~~m~~~ 125 (250)
.-.|...
T Consensus 158 vt~~~~q 164 (418)
T KOG4570|consen 158 VTEVMMQ 164 (418)
T ss_pred HHHHHHH
Confidence 8776543
No 212
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.75 E-value=0.86 Score=36.12 Aligned_cols=87 Identities=7% Similarity=-0.030 Sum_probs=65.2
Q ss_pred hhhccChhHHHHHHHHhhhhhcccccc-c-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCLFF-G-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID 81 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y-~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 81 (250)
+.+.+++++|...+.......|+--+| . .+.|.+=.+.....+ +--..+|..|-.+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 567899999999999988885544444 4 456666556655543 223578999999999999999999
Q ss_pred HHHHHHHhcCCCCCchhHhhhH
Q 037164 82 ALMLEMEEKSINGDQFTLGIRP 103 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li 103 (250)
+.|+ +...+.|+..+|-.=|
T Consensus 170 ~ayk--KaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYK--KALELDPDNESYKSNL 189 (304)
T ss_pred HHHH--hhhccCCCcHHHHHHH
Confidence 9988 4555899998885544
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.74 E-value=5.5 Score=33.78 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=80.0
Q ss_pred hhhccChhHHHHHHHHhhhhh-ccccccc----------------hhHHHHHHHHHHHCCCCccHHHHHHHHHH--Hhhc
Q 037164 14 IFEVHGVEQAEIYFDNISKLL-RQCLFFG----------------VGKAEMVVQEMKDMGFARRTIYCYIMMIL--NYLT 74 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~-~~~~~y~----------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~--~~~~ 74 (250)
+-|.+++.+|+++|.++-... .++..+. ++..........+. .| ...|-.|..+ +.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 457899999999999998773 2222222 45555555555443 23 2455555554 4678
Q ss_pred CChhhHHHHHHHHHhc--CCCC------------CchhHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCccHHHHHH
Q 037164 75 GNREKIDALMLEMEEK--SING------------DQFTLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLDFNLLAV 137 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~--gi~p------------~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~~~~~~~ 137 (250)
+.+++|.+.+..=.++ +-.| |...=++.+++....|+++++..+++++... ....-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999988876655 3322 2222367789999999999999999988654 133356666666
Q ss_pred H
Q 037164 138 L 138 (250)
Q Consensus 138 l 138 (250)
+
T Consensus 173 ~ 173 (549)
T PF07079_consen 173 A 173 (549)
T ss_pred H
Confidence 3
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.58 E-value=0.37 Score=37.95 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhccCC-CChhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 037164 167 DQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLD----------------DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH 229 (250)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 229 (250)
+-+..+++.+++.+. .|..+|+.||..+-|.. +-+-+.+++++|+..|+.||-.+-..|+.++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 334444445555444 66677777776555543 3467899999999999999999999999999
Q ss_pred HhcCCh
Q 037164 230 CKNGLL 235 (250)
Q Consensus 230 ~~~g~~ 235 (250)
.+.|..
T Consensus 169 Gr~~~p 174 (406)
T KOG3941|consen 169 GRWNFP 174 (406)
T ss_pred cccccc
Confidence 888764
No 215
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=92.38 E-value=1.7 Score=29.90 Aligned_cols=88 Identities=5% Similarity=-0.050 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHhhcCChh--hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164 60 RTIYCYIMMILNYLTGNRE--KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV 137 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 137 (250)
+..-|+.--.-|......| +..+-++.+...++.|++.....-+.++-+.+|+..|.++|+-++.. +.+....|..
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y 123 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPY 123 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHH
Confidence 3344444444444333333 56666777777889999999999999999999999999999988763 5555556776
Q ss_pred HHHHHHHHHHHH
Q 037164 138 LLYMAMTMLKKS 149 (250)
Q Consensus 138 l~~~a~~~~~~~ 149 (250)
++++..-+++++
T Consensus 124 ~v~elkpvl~EL 135 (149)
T KOG4077|consen 124 YVKELKPVLNEL 135 (149)
T ss_pred HHHHHHHHHHHh
Confidence 766666666665
No 216
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.19 E-value=0.29 Score=25.30 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=11.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHH
Q 037164 64 CYIMMILNYLTGNREKIDALMLE 86 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~ 86 (250)
|+.|-..|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444555555555555555554
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.14 E-value=6.1 Score=32.85 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=49.3
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhcC---CCCCchhHhhhHHHHHh---cCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEKS---INGDQFTLGIRPSAYAA---ASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~g---i~p~~~ty~~li~~~~~---~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
.|+-+|-...+++...++.+.|...- +.-....--...-++.+ .|+.++|.+++..+... .-.+++-||..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence 45556999999999999999998762 11122222233456666 89999999999995444 455666666655
No 218
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.13 E-value=1.9 Score=34.21 Aligned_cols=73 Identities=8% Similarity=-0.109 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh----CCCCCccHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES----NPQMVLDFNLL 135 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~~ 135 (250)
.++..++..+...|+++.+.+.++++.... +-|...|.-+|.+|.+.|+...|...|+++.. ..|+.|...+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 567888999999999999999999988763 34889999999999999999999999998865 25888887664
No 219
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.13 E-value=0.8 Score=36.26 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+++.+++.+...|+++.+...++++.. --+-|...|..|+.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~-~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE-LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344555555555566666666655552 2334555566666666666666666655555543
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=91.77 E-value=3.8 Score=29.69 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+++|..+|.-+.-.+. -|..-|..|-.+|-..+++++|...+...-..+. -|+..+--.-.||...|+.+.|.+.|..
T Consensus 53 ~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 53 LDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 8899999988877553 3455677788888889999999999998666543 3555555577899999999999999998
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164 122 TESNPQMVLDFNLLAVLLYMAMTMLKKSE 150 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~ 150 (250)
.... |. ...+.++|...++.+.
T Consensus 131 a~~~----~~---~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 131 VNER----TE---DESLRAKALVYLEALK 152 (165)
T ss_pred HHhC----cc---hHHHHHHHHHHHHHHH
Confidence 8764 11 4444666777766655
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.57 E-value=4.7 Score=34.58 Aligned_cols=78 Identities=5% Similarity=-0.077 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-ccHHHHHHHHHHH
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV-LDFNLLAVLLYMA 142 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~l~~~a 142 (250)
..|-.+.-+.|+.++|.+.+.+|.+. ...-+.....+||.++...+.+.++..++.+-... ..+ ....+|+..+-++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHHHHH
Confidence 44566677899999999999998654 33234457788999999999999999999986543 232 2346666664344
Q ss_pred H
Q 037164 143 M 143 (250)
Q Consensus 143 ~ 143 (250)
.
T Consensus 342 R 342 (539)
T PF04184_consen 342 R 342 (539)
T ss_pred H
Confidence 3
No 222
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.56 E-value=1.3 Score=35.00 Aligned_cols=63 Identities=11% Similarity=-0.053 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKN--LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+--+-..|...|++++|...|+.+...- -+.....+-.+...+...|+.++|..+++.+++.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566688899999999999999988431 1222334444566777899999999999988763
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.50 E-value=0.39 Score=26.11 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=18.7
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+|..+-.+|.+.|++++|.+++++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777766653
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.33 E-value=2.3 Score=31.33 Aligned_cols=77 Identities=12% Similarity=-0.112 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
..+..+...|++.|+.+.|.+.+.++.+....|.. ..+-.+|......+++..+...+.+......-..|+..-+-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 67889999999999999999999999987665543 456778889999999999999988876542233344444333
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.25 E-value=1.9 Score=37.13 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHH-HHhhcCChhhHHHHHHHHHhc--CCC-CCchhHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMI-LNYLTGNREKIDALMLEMEEK--SIN-GDQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~--gi~-p~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
++.|.++++.+.+. -|+...|...-. .+...|++++|.+.|+..... ..+ .....+--+.-++.-.+++++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 55566666665553 244444433332 234456666666666643221 110 112233334445555566666666
Q ss_pred HHHHHhhCCCCCccHHHHHHH
Q 037164 118 IINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 118 ~~~~m~~~~g~~~~~~~~~~l 138 (250)
.|..+.+.....+..++|...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHhccccHHHHHHHHHH
Confidence 666654432343444444333
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.18 E-value=7.4 Score=33.62 Aligned_cols=140 Identities=14% Similarity=0.076 Sum_probs=74.2
Q ss_pred hHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------------------HHHHHHHHHHHHhhhhccCCchhhh
Q 037164 102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------------------LYMAMTMLKKSEGLIATKRNSSNAF 163 (250)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------------------~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (250)
+++..+=.||-+.+.+.+.+..+..++.-.......+ .+.+.+++.++.... |+.. .|
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~---lf 269 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSA---LF 269 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcH---HH
Confidence 4444555677777777777665543444322222222 344566666655444 3332 22
Q ss_pred c--------chhHHHHHHHHHhccCC-------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 037164 164 E--------LKDQLYRIWKHYGQTRK-------VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDA 228 (250)
Q Consensus 164 ~--------~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 228 (250)
. ..++++++.+.+..... .....+--+.-++.-..++++|.+.|..+.+.. ..+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 2 55556666666553211 122333344456777788888888888887532 2233333333333
Q ss_pred -HHhcCCh-------hHHHHHHHHHH
Q 037164 229 -HCKNGLL-------EKAQSLINHAE 246 (250)
Q Consensus 229 -~~~~g~~-------~~a~~~~~~m~ 246 (250)
+...|+. ++|..+|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3335666 77777776653
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.17 E-value=6.5 Score=31.27 Aligned_cols=108 Identities=10% Similarity=0.077 Sum_probs=67.5
Q ss_pred hhccChhHHHHHHHHhhhhh--cccc--------ccc------------------hhHHHHHHHH---HHHCCCCcc---
Q 037164 15 FEVHGVEQAEIYFDNISKLL--RQCL--------FFG------------------VGKAEMVVQE---MKDMGFARR--- 60 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~~--~~~~--------~y~------------------~~~A~~~~~~---m~~~~~~p~--- 60 (250)
-+.|+++.|..++.+.+... .++. .|+ +++|.++++. +.+ ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~--~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK--LSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc--cCCcHHH
Confidence 35677778888877766542 1111 222 6777777755 322 2333
Q ss_pred --HHHHHHHHHHHhhcCChh---hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 61 --TIYCYIMMILNYLTGNRE---KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 61 --~~~y~~li~~~~~~g~~~---~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
..+...|+.+|...+..+ +|.++++.+.+. ..--+.+|-.-|..+.+.++.+++.+++.+|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 356788888888887765 455566666443 2222444445566777789999999999998775
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.72 E-value=10 Score=32.68 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
.+-.++-+.|+.++|.+.+++|.+.... -...+...|++++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4445666778888888888887643222 23456777888888888888888877664
No 229
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.55 E-value=1.1 Score=40.17 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=53.2
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
.+.+--..+.|.+|..+++.+........-|. .+.|+++|-+- ..++.-|..|.+.|+|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 34455566777777777777765522222222 66777766543 35667778888888888
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHH
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a 115 (250)
.|.++-.+. +|-...++.|-+-..-.-+.|++.+|
T Consensus 809 da~kla~e~--~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 809 DAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhh
Confidence 888776643 33333344443333333333333333
No 230
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=90.44 E-value=6.7 Score=36.66 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 218 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|...|..|.++|.++|++..|.++|.++..
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 888999999999999999999999987653
No 231
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=1 Score=36.09 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=66.0
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh-----hccccccc---------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL-----LRQCLFFG---------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT 74 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~-----~~~~~~y~---------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~ 74 (250)
..++.-....+++++..++=.+++. .++...|. +++++.+...=.+.|+-||-.+++.||..+.+.
T Consensus 69 ~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~ 148 (418)
T KOG4570|consen 69 RLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK 148 (418)
T ss_pred hhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence 3445555567888888887776654 23333333 899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCC
Q 037164 75 GNREKIDALMLEMEEKSI 92 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi 92 (250)
+++.+|.++.-.|.....
T Consensus 149 ~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 149 ENYKDAASVVTEVMMQEA 166 (418)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 999999999888766533
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.70 E-value=7.2 Score=30.62 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEK----SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.|+.-+.. .+.|++..|..-|....+. -+.||...| |-.++...|++++|..+|..+.+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHh
Confidence 47766654 4667799999999988765 356677777 889999999999999999888664
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.58 E-value=0.79 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS 224 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 224 (250)
+|..+-..|...|++++|+++|++..+. .+-|...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHH
Confidence 4677889999999999999999999864 2334444433
No 234
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.27 E-value=1.1 Score=23.51 Aligned_cols=26 Identities=15% Similarity=-0.049 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEM 87 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m 87 (250)
.+++.|-..|...|++++|..++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 35555555666666666666665554
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.18 E-value=5.8 Score=27.68 Aligned_cols=82 Identities=10% Similarity=-0.071 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCCCch---hHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SINGDQF---TLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~---ty~~li~~~~~~~~~~~a~~ 117 (250)
++.|++.|.+.... .+-+...||.-..++--.|+.++|+.=+++-.+. |-+ .-. .|.---..|...|+.+.|..
T Consensus 59 Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 59 LDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred hHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCchHHHHH
Confidence 56666666665554 4456677787777887778888777777765553 222 211 22222345666777777777
Q ss_pred HHHHHhhC
Q 037164 118 IINMTESN 125 (250)
Q Consensus 118 ~~~~m~~~ 125 (250)
=|+..-+-
T Consensus 137 DFe~AA~L 144 (175)
T KOG4555|consen 137 DFEAAAQL 144 (175)
T ss_pred hHHHHHHh
Confidence 77665444
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=4.3 Score=32.30 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG---NREKIDALMLEMEEKSINGDQF-TLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~~~~a~~ 117 (250)
...|..-|.+..+. -.+|...+..+-.++.... ...++..+|++.... .|+.. +-..|-..+...|++.+|..
T Consensus 172 ~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 172 ASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred hhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHH
Confidence 66677777766654 2455666666665543322 234778888876654 44444 44444588888888888888
Q ss_pred HHHHHhhC
Q 037164 118 IINMTESN 125 (250)
Q Consensus 118 ~~~~m~~~ 125 (250)
.|+.|...
T Consensus 249 ~Wq~lL~~ 256 (287)
T COG4235 249 AWQMLLDL 256 (287)
T ss_pred HHHHHHhc
Confidence 88888764
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=88.95 E-value=7.1 Score=28.32 Aligned_cols=82 Identities=7% Similarity=-0.158 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
..|+++++..+|+-. ...+..-|..|-.++-..+++++|...|......+. -|+..+--+-.+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 444444444444333 334455566666777778899999999988765442 4555566677888899999999998
Q ss_pred HHHHHh
Q 037164 242 INHAET 247 (250)
Q Consensus 242 ~~~m~~ 247 (250)
|....+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 887665
No 238
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.91 E-value=0.88 Score=23.90 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=11.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHH
Q 037164 222 PSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 222 ~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
++.|-..|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344444444455555555444444
No 239
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.69 E-value=0.23 Score=34.96 Aligned_cols=74 Identities=5% Similarity=-0.044 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
++....+++.+...+-..+....+.++..|++.+..++..++++ ..+..-...++..|-+.|.++++.-++.+
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 23 PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGLYEEAVYLYSK 95 (143)
T ss_dssp GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444445555444333445555555555555555555555555 11122334445555555555555555544
Q ss_pred H
Q 037164 122 T 122 (250)
Q Consensus 122 m 122 (250)
+
T Consensus 96 ~ 96 (143)
T PF00637_consen 96 L 96 (143)
T ss_dssp C
T ss_pred c
Confidence 4
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=14 Score=30.86 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=72.9
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI 92 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi 92 (250)
.|.|.|++..|..-|+..............++.... . ..-..+++.|..+|.+.+.+..|++..+.....+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~-~-------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~- 287 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKA-E-------ALKLACHLNLAACYLKLKEYKEAIESCNKVLELD- 287 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHH-H-------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-
Confidence 677888888888888887766444444443222111 1 1234678889999999999999999999776652
Q ss_pred CCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 93 NGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 93 ~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
++|+-..--=-.++...|+++.|...|+++.+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 23444444445788889999999999999975
No 241
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.29 E-value=5.5 Score=29.91 Aligned_cols=73 Identities=15% Similarity=0.014 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc---CCCCCchhHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK---SINGDQFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---gi~p~~~ty~~li~~~~~~~~~~~a 115 (250)
=+.|.+.|-++...+.--++..--.|..-|. ..|.+++..++-...+. +=.+|+..+.+|.+.|-+.++++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 5778888888887776666666666555555 66788888888776542 3356778888888888888887776
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.25 E-value=0.66 Score=23.68 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=16.7
Q ss_pred CccHHHHHHHHHHHhhcCChhhHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKID 81 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~ 81 (250)
+-|...|+.|-..|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445677777777777777777664
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.02 E-value=6.1 Score=33.83 Aligned_cols=74 Identities=16% Similarity=0.019 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 165 LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
+.|+++.+.+..++. .+...|..|-+...+.|+++-|++.|++.. -|..|+-.|.-.|+.+.-.++.+.
T Consensus 330 ~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence 667777777776666 356688888888888888888888887743 245566666666666666666555
Q ss_pred HHhcC
Q 037164 245 AETKK 249 (250)
Q Consensus 245 m~~~g 249 (250)
...+|
T Consensus 399 a~~~~ 403 (443)
T PF04053_consen 399 AEERG 403 (443)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 55443
No 244
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.76 E-value=12 Score=33.53 Aligned_cols=59 Identities=7% Similarity=0.055 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcCChh--hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNRE--KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
+.-|++-=.+|.+..+.. +...=+++|+++|-.|+... +...|+-.|.+.+|.++|.+-
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 345666667887776654 44455667888888888754 345677788888888888664
No 245
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=87.66 E-value=0.75 Score=31.87 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILN 71 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~ 71 (250)
-..|..+|.+|++.|-+|| .|+.|+...
T Consensus 111 k~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 6789999999999999998 788888754
No 246
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.63 E-value=10 Score=28.54 Aligned_cols=159 Identities=14% Similarity=0.015 Sum_probs=80.3
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCC--CCCchhHhhhHHHHHhcCChhHHHHHHHHHhh-CCCCCccHHHHHHH-------
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSI--NGDQFTLGIRPSAYAAASDIHGMDKIINMTES-NPQMVLDFNLLAVL------- 138 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi--~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~-~~g~~~~~~~~~~l------- 138 (250)
..+.+.|++++|.+.|+.+...-- +--....-.+..++.+.|+++.|...+++... .|+.+--...+-.+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 445677888888888888776511 01112334456788888888888888887643 32222111111111
Q ss_pred -------------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164 139 -------------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205 (250)
Q Consensus 139 -------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 205 (250)
..+|...|+++.... |++. -+.++-..+......-...--.+..-|.+.|....|..
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~---------y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRY-PNSE---------YAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH--TTST---------THHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHC-cCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 122333333333222 2222 11111111111100001111235568999999999999
Q ss_pred HHHHHHhCCCCCCC----cchHHHHHHHHhcCChhHHH
Q 037164 206 TLRNWTSKNLPYDF----GLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 206 ~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~ 239 (250)
-++.+... -|++ ...-.|+.+|.+.|..+.|.
T Consensus 163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99998854 2333 34578889999999887554
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.54 E-value=2.3 Score=31.37 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..+..+.+-|++.|+.+.|.+.|.++......+. ...+-.+|+.....|++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566677777777777777777777776655443 3345667777777777777777666554
No 248
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.03 E-value=25 Score=32.53 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHH--hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILN--YLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
..+|.....++.+. -|| ..|...+.++ .|.|..++|..+++....-+.. |..|..++-.+|.+.+..++|..+|
T Consensus 25 fkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 25 FKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 78888888888665 266 4555666664 7899999999999988877666 8899999999999999999999999
Q ss_pred HHHhh
Q 037164 120 NMTES 124 (250)
Q Consensus 120 ~~m~~ 124 (250)
+....
T Consensus 101 e~~~~ 105 (932)
T KOG2053|consen 101 ERANQ 105 (932)
T ss_pred HHHHh
Confidence 99864
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.68 E-value=13 Score=29.22 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHCC----CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCC-CchhHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMG----FARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SING-DQFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~----~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p-~~~ty~~li~~~~~~~~~~~a 115 (250)
...|..-|....+.. +.|| .+-=|-.++...|++++|..+|..+.+. +=.| -+..+--|-.+..+.|+.++|
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 355555555555431 2344 3444778899999999999999988764 2222 224556677889999999999
Q ss_pred HHHHHHHhhC
Q 037164 116 DKIINMTESN 125 (250)
Q Consensus 116 ~~~~~~m~~~ 125 (250)
..+|++..+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=25 Score=31.98 Aligned_cols=113 Identities=7% Similarity=-0.073 Sum_probs=62.4
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh-hccccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL-LRQCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL 73 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~ 73 (250)
.+|+-+...|.+..|.++-..+... ..+...|. -+.+..+=+++... ..|. .+|..+..--..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~-iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPG-ISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCc-eeHHHHHHHHHh
Confidence 5677777778888887776655443 11223333 22222233333322 3333 667777777778
Q ss_pred cCChhhHHHHHHHHHhcCC----CCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 74 TGNREKIDALMLEMEEKSI----NGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~~gi----~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
.|+++.|..+++.=...+- --+..-+..-+.-..++||.+-...++-.+.
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 8999988888874222211 1123334555666666666666555554443
No 251
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.17 E-value=1.6 Score=23.84 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 037164 225 LIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 225 li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|-.+|...|+.+.|..++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33455555555555555555443
No 252
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=85.75 E-value=12 Score=27.66 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHCCCCcc--HHH-----HHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC
Q 037164 42 VGKAEMVVQEMKDMGFARR--TIY-----CYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~--~~~-----y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~ 111 (250)
++.|..+|+.+.+.--.|. ... --..+..|.+.|.+++|.++++...+ .|+......-+..-.+.+|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 8999999999876532331 111 22334568889999999999988766 4666666555555555444
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.27 E-value=2.1 Score=21.36 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=14.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+|..+-..|...|++++|...|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555556666666666666665543
No 254
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.05 E-value=1 Score=31.65 Aligned_cols=125 Identities=6% Similarity=-0.055 Sum_probs=77.8
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----HHH
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----LYM 141 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----~~~ 141 (250)
.+|..+.+.+.++...++++.+...+-.-+....+.++..|++.++.++..++++... ...++...-..- .++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHH
Confidence 4577788899999999999999987766778889999999999999899998887322 333332221111 677
Q ss_pred HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 037164 142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDD 199 (250)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 199 (250)
+.-++.++......-. ++...++..++++..+.. .+...|..+++.|...+.
T Consensus 89 a~~Ly~~~~~~~~al~----i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEALE----ILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTCSS----TSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHHHH----HHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 7777776552221100 111333444444333333 456777777777765554
No 255
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.76 E-value=1.3 Score=30.71 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 037164 193 LLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH 229 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 229 (250)
.+.+.|.-.+|..+|++|...|.+|| .|+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45666888899999999999999996 588888764
No 256
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.72 E-value=11 Score=30.00 Aligned_cols=65 Identities=11% Similarity=-0.054 Sum_probs=41.4
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
-.++..+--.+|..+++.++|.+..++++.-... +-.-|..-|...|+...+.||..-+.+++++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3455566666667777777777777776655443 4444666677777777777776666666554
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.57 E-value=3.3 Score=20.61 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEE 89 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 89 (250)
+|..+-.+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555666666666665555433
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.24 E-value=5.1 Score=28.26 Aligned_cols=49 Identities=6% Similarity=-0.101 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG 233 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 233 (250)
..---++.+|.+.|+++.|...+++.......---.-|...+.|++.-.
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 4455667777888888888877777765433222244555555655443
No 259
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.69 E-value=1.6 Score=20.55 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 037164 223 SSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 223 ~~li~~~~~~g~~~~a~~~~~ 243 (250)
..+-.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555666666666665554
No 260
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=83.17 E-value=20 Score=27.94 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHH---HHHHHHHhhcCChhhHHHHHHHHHhcC-CCCCchhHhhhHHHHHh--c------
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYC---YIMMILNYLTGNREKIDALMLEMEEKS-INGDQFTLGIRPSAYAA--A------ 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y---~~li~~~~~~g~~~~a~~~~~~m~~~g-i~p~~~ty~~li~~~~~--~------ 109 (250)
.++|.+.|+++.... +-+..+- -.+..+|.+.++++.|...+++..+.. -.|+ .-|...+.+.+. .
T Consensus 48 y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 48 WKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhh
Confidence 789999999998753 2222332 345677899999999999999987652 2232 234344444331 1
Q ss_pred ---------CCh---hHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCch-hhhcchhHHHHHHHHH
Q 037164 110 ---------SDI---HGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSS-NAFELKDQLYRIWKHY 176 (250)
Q Consensus 110 ---------~~~---~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 176 (250)
.|. ..|.+.|+++... . |++.- ..+|...+..+..........+ .-|.+.+....+...+
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S~y----a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNSQY----TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHH--C-cCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 122 2445566665542 2 22211 2222222222221111111000 0222333333333333
Q ss_pred hcc----CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 177 GQT----RK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 177 ~~~----~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
+.. +. ........++.+|.+.|..+.|..+.....
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 333 22 222455577899999999999998887654
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.01 E-value=20 Score=27.99 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHhcCChhHHHHHHHHH
Q 037164 190 MMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG---LPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 190 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
+-.-|.+.|....|..-+++|... .+-+.. ..-.|..+|-+.|..++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445677777777777777777744 222222 2445666777777777776655443
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.20 E-value=3.3 Score=20.43 Aligned_cols=26 Identities=23% Similarity=0.014 Sum_probs=14.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 222 PSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 222 ~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|..+-..|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455556666666666666665543
No 263
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.09 E-value=3.6 Score=20.39 Aligned_cols=25 Identities=20% Similarity=-0.012 Sum_probs=13.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 222 PSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 222 ~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
|..+-..|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555544
No 264
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.61 E-value=1.5 Score=21.60 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=20.1
Q ss_pred HhhhccChhHHHHHHHHhhhhhcc
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQ 36 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~ 36 (250)
++.+.|+.++|.+.|+.+....|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 566789999999999999887665
No 265
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.21 E-value=3.2 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=10.9
Q ss_pred HHHHhcCChhHHHHHHHHHhh
Q 037164 104 SAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.+|...||.+.|.+++++...
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 345555555555555555443
No 266
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.69 E-value=51 Score=31.04 Aligned_cols=205 Identities=10% Similarity=0.040 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc----CC-CCCchhHhhhHHHHHhcCCh
Q 037164 42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK----SI-NGDQFTLGIRPSAYAAASDI 112 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi-~p~~~ty~~li~~~~~~~~~ 112 (250)
.++|...+++..+.--..+ ....+.+-..+...|++++|...+.+.... |- .+-..++..+-..+...|++
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 6677777777654211111 133455556667788888888777776532 11 11123444555667778888
Q ss_pred hHHHHHHHHHhhC---CCCC--c-cHHHHHHH---------HHHHHHHHHHHHhhhhccCCc--hhhhc-------chhH
Q 037164 113 HGMDKIINMTESN---PQMV--L-DFNLLAVL---------LYMAMTMLKKSEGLIATKRNS--SNAFE-------LKDQ 168 (250)
Q Consensus 113 ~~a~~~~~~m~~~---~g~~--~-~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~--~~~~~-------~~~~ 168 (250)
++|...+++.... .+.. + ....+..+ .++|...+.+........... ...+. ..++
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 8888777765321 1211 1 11212111 566666665554221111000 00111 2333
Q ss_pred HHHHHHHHhcc---CC--CChhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHhcCC
Q 037164 169 LYRIWKHYGQT---RK--VFNKGY-----MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL----PSSLIDAHCKNGL 234 (250)
Q Consensus 169 ~~~~~~~~~~~---~~--~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~ 234 (250)
...+...+... .. .....+ ...+..+...|+.+.|..++........ ..... +..+..++...|+
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcCC
Confidence 33333322221 00 001111 1122444557778888887766442111 11111 3456677888999
Q ss_pred hhHHHHHHHHHHh
Q 037164 235 LEKAQSLINHAET 247 (250)
Q Consensus 235 ~~~a~~~~~~m~~ 247 (250)
.++|...+++..+
T Consensus 707 ~~~A~~~l~~al~ 719 (903)
T PRK04841 707 FDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=79.65 E-value=18 Score=25.30 Aligned_cols=59 Identities=10% Similarity=-0.138 Sum_probs=48.6
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~ 129 (250)
+.+..|+.++|++.|.+-... .+.+...||.-..++.-.|+.++|++=+++...-.|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 567899999999999976654 44578999999999999999999999998876542443
No 268
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.35 E-value=30 Score=27.64 Aligned_cols=113 Identities=15% Similarity=0.021 Sum_probs=65.6
Q ss_pred CCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc-chhHHHH
Q 037164 93 NGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE-LKDQLYR 171 (250)
Q Consensus 93 ~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 171 (250)
+-|...|-.|-..|.+.|+++.|..-|....+-.|-.|+...- + .+++ +|. ......+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g--~-aeaL------------------~~~a~~~~ta~ 211 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLG--L-AEAL------------------YYQAGQQMTAK 211 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHH--H-HHHH------------------HHhcCCcccHH
Confidence 3477889999999999999999999999886543555543221 1 0000 000 0011112
Q ss_pred HHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 037164 172 IWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDA 228 (250)
Q Consensus 172 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 228 (250)
+-+++++. .+.+...-..+--.+...|++.+|...|+.|.+. .+|| .-+..+|+.
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~-~~rr~~ie~ 269 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD-DPRRSLIER 269 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC-CchHHHHHH
Confidence 22223222 1123344445557889999999999999999854 3333 344445543
No 269
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.18 E-value=42 Score=29.20 Aligned_cols=192 Identities=16% Similarity=0.086 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhh-------HHHHHhcCChhH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR-------PSAYAAASDIHG 114 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~l-------i~~~~~~~~~~~ 114 (250)
++.|..-+....+.. -+..-++..-.+|...|.+..+......-.+.|-. ...-|+.+ -++|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 556666666665543 44445566666788888877776666655444432 22223332 245666778888
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCc-----hhhhcchhHHHHHHHHHhccCC--C-Chhh
Q 037164 115 MDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNS-----SNAFELKDQLYRIWKHYGQTRK--V-FNKG 186 (250)
Q Consensus 115 a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 186 (250)
+.+.|.+.... -..|+..+-....+++........ -+.|.... .+-+.+.++...+...+.+... | |...
T Consensus 317 ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 317 AIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKA-YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 88888886544 344444333222333333222221 00000000 0012255555666655554422 3 4477
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC-------ChhHHHHHHHHHH
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG-------LLEKAQSLINHAE 246 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~ 246 (250)
|...--+|.+.|.+..|.+=-+...+. .|+ .+.+|.|.| ++++|.+.|.+..
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL--~p~------~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIEL--DPN------FIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc--Cch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777766665543 221 344444443 4555555555544
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.61 E-value=19 Score=24.94 Aligned_cols=57 Identities=5% Similarity=-0.066 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
.+....|.+|..|++.. .++..+++.. .++......+++.|-+.+.++++.-++..+
T Consensus 39 ~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 39 ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 34455666666665543 3333333331 122233333555555555555555555444
No 271
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=78.10 E-value=6.2 Score=29.70 Aligned_cols=53 Identities=23% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 194 LLKLDDVKGAEKTLRNWTSKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 194 ~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+...|++++|...|+.+..... +.-....-.+..+|.+.|+++.|...+++.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344455555555555443211 1111223334444445555555555554443
No 272
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.03 E-value=20 Score=24.73 Aligned_cols=75 Identities=8% Similarity=0.051 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
++++.+.|..... +.-|..-.. +=-.|++.- +.+.++|..|.++||--.. ..|...-..+-..|++++|.++|+
T Consensus 49 Ler~~~~f~~~~~--Y~nD~Rylk-iWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDER--YKNDERYLK-IWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGG--GTT-HHHHH-HHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHh--hcCCHHHHH-HHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544332 344543333 333344433 3899999999998886544 567888888999999999999987
Q ss_pred H
Q 037164 121 M 121 (250)
Q Consensus 121 ~ 121 (250)
.
T Consensus 124 ~ 124 (126)
T PF08311_consen 124 L 124 (126)
T ss_dssp H
T ss_pred h
Confidence 5
No 273
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.66 E-value=20 Score=24.67 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 167 DQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
.-++++...++.... .+..-|--+=-.|++. .+.+.++|+.|.++|+.-. +..|..--..+...|++++|.++++.
T Consensus 47 ~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 47 ELLERCIRKFKDDERYKNDERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345555555555433 4444454444444443 3399999999998887654 44577777778889999999999976
Q ss_pred H
Q 037164 245 A 245 (250)
Q Consensus 245 m 245 (250)
-
T Consensus 125 G 125 (126)
T PF08311_consen 125 G 125 (126)
T ss_dssp H
T ss_pred h
Confidence 3
No 274
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.34 E-value=34 Score=27.14 Aligned_cols=83 Identities=5% Similarity=-0.076 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhH-----HHHHhcCChhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP-----SAYAAASDIHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li-----~~~~~~~~~~~a~ 116 (250)
..-..+.+++..+.+-+-++..-..|+..-.+.||.+.|..+|+..++..=..|..+.++++ ..|.-+.++.+|.
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence 34445556666665555667777888888889999999999999887654445666666554 3455567788888
Q ss_pred HHHHHHhh
Q 037164 117 KIINMTES 124 (250)
Q Consensus 117 ~~~~~m~~ 124 (250)
..++++..
T Consensus 273 r~~~~i~~ 280 (366)
T KOG2796|consen 273 RFFTEILR 280 (366)
T ss_pred HHHhhccc
Confidence 88877754
No 275
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.12 E-value=22 Score=24.68 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=58.9
Q ss_pred HhhhccChhHHHHHHHHhhhh--hccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 13 LIFEVHGVEQAEIYFDNISKL--LRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
-|+-.++.+.++++=...... .|....|.+. +-++.+...++.|+..+--.-+.+|-+.+|+-.|.++|+-.+..
T Consensus 37 ~~~~~hg~et~EEfd~ry~~yf~r~~iD~wEvr---kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 37 KYSMEHGPETAEEFDARYEKYFNRPEIDGWEVR---KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred hhHhhcCcccHHHHHHHHHHHcCcccchHHHHH---HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456666666555554444443 1334444333 44566677789999999999999999999999999999998765
Q ss_pred CCCCCchhHhhhH
Q 037164 91 SINGDQFTLGIRP 103 (250)
Q Consensus 91 gi~p~~~ty~~li 103 (250)
+.+....|-.++
T Consensus 114 -~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 114 -CGAQKQVYPYYV 125 (149)
T ss_pred -cccHHHHHHHHH
Confidence 333333454443
No 276
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=77.09 E-value=6.3 Score=29.37 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCC--------------CCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSI--------------NGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi--------------~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
-++|..|-+.-+|.+..++++.|.+..+ .|-...-|.-...|.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 5778889999999999999999876533 44455678888999999999999999874
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.77 E-value=59 Score=29.72 Aligned_cols=35 Identities=0% Similarity=-0.155 Sum_probs=18.0
Q ss_pred CCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCC
Q 037164 94 GDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQM 128 (250)
Q Consensus 94 p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~ 128 (250)
|-+..|..|...-...-+++.|+.-|-+...-+|+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi 724 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI 724 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch
Confidence 45555555555555555555555555544433344
No 278
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.64 E-value=7.3 Score=26.09 Aligned_cols=28 Identities=4% Similarity=-0.133 Sum_probs=25.0
Q ss_pred hhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 97 FTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 97 ~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.-|..|+..|...|..++|.+++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4589999999999999999999998866
No 279
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=76.63 E-value=9 Score=21.31 Aligned_cols=33 Identities=6% Similarity=-0.015 Sum_probs=20.7
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164 72 YLTGNREKIDALMLEMEEKSINGDQFTLGIRPS 104 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~ 104 (250)
.+.|-.+++..++++|.+.|+--+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666677777776776666666655543
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.62 E-value=59 Score=30.15 Aligned_cols=74 Identities=8% Similarity=0.107 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
+..--.+++.+.+.|+. +...=+.|+++|.+.++.++..++.+... .|.- .+-....+..+.+.+-+++|..+-
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 44444555666666653 33455677777777777777666666332 2211 111233445555555555554443
No 281
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=76.48 E-value=19 Score=26.23 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=50.6
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhH
Q 037164 169 LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEK 237 (250)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 237 (250)
++.+.+.++..+...+..-..++..+...++.-.|.+|++.+.+.+...+..|...-++.+.+.|-+..
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 344455566655544555567777777777788899999999988888888887777888888876543
No 282
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.99 E-value=60 Score=29.22 Aligned_cols=176 Identities=16% Similarity=0.099 Sum_probs=93.2
Q ss_pred HhhcCChhhHHHHHHHHHhcC--CC----CCchhHhhhHHH--HHhcCChhHHHHHHH--------HHhhCCCCCccHHH
Q 037164 71 NYLTGNREKIDALMLEMEEKS--IN----GDQFTLGIRPSA--YAAASDIHGMDKIIN--------MTESNPQMVLDFNL 134 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~g--i~----p~~~ty~~li~~--~~~~~~~~~a~~~~~--------~m~~~~g~~~~~~~ 134 (250)
.+-.+++..|.+.+++|.+.. .+ .....+...+.| +-..|+++.|...|. ..... +...+..+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~-~~~~El~i 449 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRK-SKFRELYI 449 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccC-CcchHHHH
Confidence 355778999999999888642 11 122233333332 334589999999997 44444 77778888
Q ss_pred HHHH-------------HHH--HHHHHHHHHhhhhccCC--ch-------hhhc---------chhHHHHHHHHH-hccC
Q 037164 135 LAVL-------------LYM--AMTMLKKSEGLIATKRN--SS-------NAFE---------LKDQLYRIWKHY-GQTR 180 (250)
Q Consensus 135 ~~~l-------------~~~--a~~~~~~~~~~~~~~~~--~~-------~~~~---------~~~~~~~~~~~~-~~~~ 180 (250)
++.+ ..+ ..++++.++........ .. .+++ ....+...++.. +...
T Consensus 450 la~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~ 529 (608)
T PF10345_consen 450 LAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLG 529 (608)
T ss_pred HHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhc
Confidence 8777 122 55555555532211111 00 0010 222333334444 3322
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--CCcchH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 037164 181 KVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-Y--DFGLPS-----SLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 181 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~--~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..- ....-+++.+-.-.|++.+..+........... | ....|. .+.+.|-..|+.++|.....+..+
T Consensus 530 n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 530 NSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 211 122223333333368887766666553322222 2 455563 344457778999999998877653
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.88 E-value=24 Score=24.51 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.-..+|..+...+.+.....+++.+...|. .+....|.+|..|++... ....+.++
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 345678888888999999999999888874 678899999999997643 33344444
No 284
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.72 E-value=13 Score=27.64 Aligned_cols=30 Identities=20% Similarity=-0.006 Sum_probs=15.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
|+..+|..++.++...|+.++|.++.+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 285
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.67 E-value=16 Score=27.20 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=44.8
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 66 IMMILNYLTGNREKIDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
..+......++.+......+..++ ....|+..+|..++..+...|+.++|.++.+++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333334466666666666666544 356799999999999999999999999999988753
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.24 E-value=25 Score=25.14 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=9.3
Q ss_pred HhcCCHHHHHHHHHHHH
Q 037164 195 LKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 195 ~~~g~~~~A~~~~~~m~ 211 (250)
...|++++|.++|++..
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 44555555555555554
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=74.88 E-value=30 Score=25.25 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHH
Q 037164 45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYA 107 (250)
Q Consensus 45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~ 107 (250)
-.++.+.+.+.+++|+...|..+|..+.+.|.+.....+ ...++.||.......+-.+.
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~ 71 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG 71 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH
Confidence 456677778889999999999999999999987655444 44777777776665554443
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.37 E-value=46 Score=27.44 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNW 210 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m 210 (250)
.|-..--.+...+.++.|+.+|+.=
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHH
Confidence 3444444556668888888888773
No 289
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=74.11 E-value=35 Score=25.63 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHhccC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhcCChhHHH
Q 037164 165 LKDQLYRIWKHYGQTR----KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-LPYDFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~ 239 (250)
..|+..++...+.+.. .-|....-.+-.+....+++..|...++..-... -.-++.+.-.+-+.|...|.+.+|+
T Consensus 101 elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae 180 (251)
T COG4700 101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE 180 (251)
T ss_pred HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence 6667777766665542 2555666777778888888888888888865432 1223455666778888889888888
Q ss_pred HHHHHHHh
Q 037164 240 SLINHAET 247 (250)
Q Consensus 240 ~~~~~m~~ 247 (250)
.-|+-...
T Consensus 181 safe~a~~ 188 (251)
T COG4700 181 SAFEVAIS 188 (251)
T ss_pred HHHHHHHH
Confidence 88876654
No 290
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.88 E-value=6.1 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 037164 224 SLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 224 ~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.+|.||...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555554443
No 291
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.46 E-value=19 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=26.0
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
...+.|+++.|.++.++ .++...|..|-+...+.|+++-|+++|.+..
T Consensus 327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 34455666666555442 2245566666666666666666666665543
No 292
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.99 E-value=11 Score=26.69 Aligned_cols=55 Identities=7% Similarity=-0.166 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh
Q 037164 59 RRTIYCYIMMILNYLTGN-REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH 113 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~ 113 (250)
.+-.+|++++.+.++... --.+..+|+-|++.+.+++..-|..+|+++.+....+
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 345689999999988777 5568899999999999999999999999988764433
No 293
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.72 E-value=22 Score=27.35 Aligned_cols=53 Identities=26% Similarity=0.236 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
+..|+.+.+.+.+.+|+...+.-. +..+.|...-..|++.||-.|+|++|..-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qV-kakPtda~~RhflfqLlcvaGdw~kAl~Q 57 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQV-KAKPTDAGGRHFLFQLLCVAGDWEKALAQ 57 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-hcCCccccchhHHHHHHhhcchHHHHHHH
Confidence 344555556666666665555544 23344555555666666666666665543
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.42 E-value=6.6 Score=18.07 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=14.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 222 PSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 222 ~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
|..+-..+...|+++.|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555666666666655544
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.34 E-value=33 Score=25.40 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=73.5
Q ss_pred hhhccChhHHHHHHHHhhhhhccccccc----------------hhHHHHHHHHHHHCCCCccHH-HHHHHHHH--Hhhc
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCLFFG----------------VGKAEMVVQEMKDMGFARRTI-YCYIMMIL--NYLT 74 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~----------------~~~A~~~~~~m~~~~~~p~~~-~y~~li~~--~~~~ 74 (250)
+++.+..++|+.-|..+.+. +...|- ...|...|.+.-...-.|-+. -..-|=.+ +.-.
T Consensus 68 lA~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 45678888888888888765 333333 778888888886654334332 22222222 3567
Q ss_pred CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 75 GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
|.++.+..-.+-+...|-+--...=..|--+-.+.|++..|.++|.++...
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 888888887777665554444444556667778899999999999998776
No 296
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.14 E-value=43 Score=25.83 Aligned_cols=151 Identities=12% Similarity=-0.043 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-- 138 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-- 138 (250)
+.+||-|---+...|+++.|.+.|+...+-+-.-+-...|-=|. +.-.|++.-|.+=|-..-+...-.|=-..|-.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 56788888788889999999999987766533222222232232 333677777776666654431444555556555
Q ss_pred ----HHHHHHHH-HHHHhhhhccCC--chhhhc-chhHHHHHHHHHhccCC-------CChhhHHHHHHHHHhcCCHHHH
Q 037164 139 ----LYMAMTML-KKSEGLIATKRN--SSNAFE-LKDQLYRIWKHYGQTRK-------VFNKGYMTMMGLLLKLDDVKGA 203 (250)
Q Consensus 139 ----~~~a~~~~-~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A 203 (250)
..+|..-+ ++.+. .....+ ..+-|- ..-..+.+.+..+.... .-+.||--+-+-+...|++++|
T Consensus 178 ~k~dP~~A~tnL~qR~~~-~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A 256 (297)
T COG4785 178 QKLDPKQAKTNLKQRAEK-SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEA 256 (297)
T ss_pred hhCCHHHHHHHHHHHHHh-ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33443333 33221 111111 000110 11112222222222111 2346677777888888999999
Q ss_pred HHHHHHHHhC
Q 037164 204 EKTLRNWTSK 213 (250)
Q Consensus 204 ~~~~~~m~~~ 213 (250)
..+|+-....
T Consensus 257 ~~LfKLaian 266 (297)
T COG4785 257 TALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHH
Confidence 9998876654
No 297
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.14 E-value=6.4 Score=23.29 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEE 89 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~ 89 (250)
--.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578899999999999999988765
No 298
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.09 E-value=11 Score=23.60 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHCCCCc-c-HHHHHHHHHHHhhcCChhhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFAR-R-TIYCYIMMILNYLTGNREKIDAL 83 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p-~-~~~y~~li~~~~~~g~~~~a~~~ 83 (250)
-++|+..|.+.++.-..| + =.+...|+.+|+..|++.+++++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554432211 1 13445555666666666655544
No 299
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.14 E-value=12 Score=20.81 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLID 227 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 227 (250)
+...-+.|-+.++..++++|...|+..+...+..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3444577888899999999998898888777776664
No 300
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.05 E-value=7.4 Score=31.15 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=32.0
Q ss_pred CCccHHH-HHHHHHHHhhcCChhhHHHHHHHHHhcCCCC
Q 037164 57 FARRTIY-CYIMMILNYLTGNREKIDALMLEMEEKSING 94 (250)
Q Consensus 57 ~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p 94 (250)
+.||..+ ||.-|..-.+.||.++|+++++|-++.|+.-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3455555 5799999999999999999999999999863
No 301
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.80 E-value=26 Score=24.80 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=50.3
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 169 LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
..++.+.++..+..-+.--..++..+...++.-.|+++++.+...+...+..|--.-++.+...|-+.
T Consensus 5 ~~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 34455666666554455566888999999888999999999998887777777666677777777543
No 302
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.82 E-value=8.7 Score=30.78 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCCCCchh-HhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 91 SINGDQFT-LGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 91 gi~p~~~t-y~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
-+.||..+ |+.-|..-.+.||+++|++++++.++- |+.---.+|
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~L-G~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERL-GSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCchHHHHH
Confidence 45566655 579999999999999999999999988 887544443
No 303
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=68 Score=29.39 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=71.5
Q ss_pred CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHH
Q 037164 91 SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170 (250)
Q Consensus 91 gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (250)
|..-...|.+--+.-+...|+-.+|.++-++.+- ||.-.|- + +.. +....++.+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~w-L---------k~~-----------aLa~~~kwe 732 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWW-L---------KLT-----------ALADIKKWE 732 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHH-H---------HHH-----------HHHhhhhHH
Confidence 3334445555666667777777777777655532 2221110 0 000 111333444
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 171 RIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
++.++-++. .++..|..+..+|.+.|+.++|.+.+.+... . .-.+.+|.+.|++.+|.++--+
T Consensus 733 eLekfAksk--ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~--l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 733 ELEKFAKSK--KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG--L-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcc--CCCCCchhHHHHHHhcccHHHHhhhhhccCC--h-------HHHHHHHHHhccHHHHHHHHHH
Confidence 444444433 3367899999999999999999999865431 1 1578899999999999877543
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.10 E-value=25 Score=23.51 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCcchHHHHHHHHhcCC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-----NLPYDFGLPSSLIDAHCKNGL 234 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~ 234 (250)
.-|..++.-|...|..++|.+++.+.... .-++.......+|+.+.+-|.
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 34889999999999999999999998861 112222333445666666543
No 305
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.94 E-value=45 Score=23.62 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 196 KLDDVKGAEKTLRNWTSKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 196 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+.|+++.|.+.|+.+...-. +-....---|+.+|.+.|++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555555555555553211 11223344455555556666665555555543
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.94 E-value=48 Score=23.99 Aligned_cols=62 Identities=13% Similarity=0.006 Sum_probs=33.4
Q ss_pred HhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 71 NYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
+.+.|+|.+|.++|+++.+.. |....-..|+..|.....-..=...=++.... +-.|+....
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~-~~d~~a~~L 115 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRRYADEVLES-GADPDARAL 115 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHhc-CCChHHHHH
Confidence 567888888888888876653 44444445554444443333333333344544 444554433
No 307
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.45 E-value=12 Score=23.43 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-C-CcchHHHHHHHHhcCChhHHHHHH
Q 037164 196 KLDDVKGAEKTLRNWTSKNLPY-D-FGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 196 ~~g~~~~A~~~~~~m~~~~~~~-~-~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
...+.++|...|+...++-..+ + -.+...|+.+|+..|.++++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888776543322 2 345677888888888888777654
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.16 E-value=27 Score=25.85 Aligned_cols=76 Identities=4% Similarity=-0.098 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhcC----ChhhHHHHHHHHH-----hcCCCCCchhHhhhHHHHHhcCC
Q 037164 42 VGKAEMVVQEMKDMGFARR-TIYCYIMMILNYLTG----NREKIDALMLEME-----EKSINGDQFTLGIRPSAYAAASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g----~~~~a~~~~~~m~-----~~gi~p~~~ty~~li~~~~~~~~ 111 (250)
+++|.+-|++.... .|+ ..++..+-++|...+ +..+|..+|+.-. .....|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----
Confidence 67777777877764 455 367777777765543 3334444444432 2346789899988877764
Q ss_pred hhHHHHHHHHHhhC
Q 037164 112 IHGMDKIINMTESN 125 (250)
Q Consensus 112 ~~~a~~~~~~m~~~ 125 (250)
+|-+++.++.+.
T Consensus 125 --kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 --KAPELHMEIHKQ 136 (186)
T ss_dssp --THHHHHHHHHHS
T ss_pred --hhHHHHHHHHHH
Confidence 355566665444
No 309
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=63.26 E-value=13 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=31.6
Q ss_pred CCCccchhhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCC
Q 037164 4 KLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMG 56 (250)
Q Consensus 4 ~~~~p~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~ 56 (250)
.|+.|++|+-+.+|.-.++|+++.+.+.+..- -+.+.|..+-..+.+.|
T Consensus 61 sGy~PtViD~lrRC~T~EEALEVInylek~GE----It~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 61 SGYNPTVIDYLRRCKTDEEALEVINYLEKRGE----ITPEEAKELRSILVKKG 109 (128)
T ss_pred cCCCChHHHHHHHhCcHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhh
Confidence 45667888888888888888888888776511 11344555555554444
No 310
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=63.00 E-value=1.3e+02 Score=27.77 Aligned_cols=54 Identities=17% Similarity=-0.012 Sum_probs=31.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
.--...|.++.|...--.+... .+-|-..+|+.|.-+-|....+.-.-+-|-++
T Consensus 1029 Qrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1029 QRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 4445667788877665444432 45666777777766666555555444444433
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.51 E-value=47 Score=26.79 Aligned_cols=70 Identities=9% Similarity=-0.164 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHH
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNL 134 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~ 134 (250)
++..-..|..+|.+.+|.++.+.....+ +.+...|-.|+..+...||--+|.+-++.+... .|+..|-..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 4555677899999999999998765541 236778889999999999966666666555321 356555443
No 312
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=62.13 E-value=95 Score=26.06 Aligned_cols=152 Identities=15% Similarity=0.076 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHCC---CCccHHHHHHHHHHHhh---cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc------
Q 037164 42 VGKAEMVVQEMKDMG---FARRTIYCYIMMILNYL---TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA------ 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~---~~p~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~------ 109 (250)
.+...++.+.|...- +.-...+---...++-| .|+.++|++++.......-.++..||..+-..|-..
T Consensus 157 ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~ 236 (374)
T PF13281_consen 157 YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNF 236 (374)
T ss_pred HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCc
Confidence 677777777776641 22222322334445566 999999999999977666778888988877666432
Q ss_pred ---CChhHHHHHHHHHhhCCCCCccHHH---HHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHH----HHH-hc
Q 037164 110 ---SDIHGMDKIINMTESNPQMVLDFNL---LAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIW----KHY-GQ 178 (250)
Q Consensus 110 ---~~~~~a~~~~~~m~~~~g~~~~~~~---~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~ 178 (250)
..+++|...|.+.-. +.||.++ +.+++.- .+. ... ...++.++- ..+ +.
T Consensus 237 ~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~---------~g~--~~~------~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 237 TDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLML---------AGH--DFE------TSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred cchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHH---------cCC--ccc------chHHHHHHHHHHHHHHHhh
Confidence 235667777665432 2233221 1111000 000 000 111111111 111 11
Q ss_pred cCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 179 TRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 179 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
... .+-..+.+++++..-.|+.++|.+..++|...
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111 33355678899999999999999999999854
No 313
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=61.94 E-value=66 Score=24.22 Aligned_cols=68 Identities=10% Similarity=-0.082 Sum_probs=46.3
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
..|++..--.|-++..+.|+..+|...|++-..-=+.-|....-.+-++....+++..|..+++.+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 45666666667777777777777777777655444455666666666777777777777777776654
No 314
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=61.74 E-value=1e+02 Score=26.19 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKI 118 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~ 118 (250)
.+.|.+-|+-|.+. |. ..-...|.-.--+.|+.+.|..+-.+-- +..|. ...+..++...|..||++.|+++
T Consensus 136 ~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa--~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 136 YEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAA--EKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred hHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH--hhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 56677777777653 22 1223344444456777777777776433 34444 36788899999999999999999
Q ss_pred HHHHhhCCCCCccH
Q 037164 119 INMTESNPQMVLDF 132 (250)
Q Consensus 119 ~~~m~~~~g~~~~~ 132 (250)
++.-+...-+.++.
T Consensus 211 vd~~~~~~vie~~~ 224 (531)
T COG3898 211 VDAQRAAKVIEKDV 224 (531)
T ss_pred HHHHHHHHhhchhh
Confidence 99876653455554
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=61.21 E-value=82 Score=25.03 Aligned_cols=163 Identities=10% Similarity=0.009 Sum_probs=79.8
Q ss_pred hhcCChhhHHHHHHHHHhcC--CCCCch------hHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHHHHHHH
Q 037164 72 YLTGNREKIDALMLEMEEKS--INGDQF------TLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNLLAVLL 139 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~g--i~p~~~------ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~~~~l~ 139 (250)
.+.|+.+.|.-++...+... ..|+.. .||+=.+.+.+..+++.|..++++.... .+.......+..+-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45788888888888766532 233322 3444444444444777777777665322 11111111111110
Q ss_pred HHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164 140 YMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216 (250)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 216 (250)
..++.-+..... ... ..+..+++.+.++.. .+-....+..-|+.+.+.++.+.+.+++.+|... +.
T Consensus 84 ---~~iL~~La~~~l-~~~------~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~ 152 (278)
T PF08631_consen 84 ---LSILRLLANAYL-EWD------TYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VD 152 (278)
T ss_pred ---HHHHHHHHHHHH-cCC------ChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cc
Confidence 111111110000 000 223344444443333 2222455656677777788899999999998854 32
Q ss_pred CCCcchHHHHHHH---HhcCChhHHHHHHHHHH
Q 037164 217 YDFGLPSSLIDAH---CKNGLLEKAQSLINHAE 246 (250)
Q Consensus 217 ~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~ 246 (250)
.....+..++..+ ... ....|...++.++
T Consensus 153 ~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l 184 (278)
T PF08631_consen 153 HSESNFDSILHHIKQLAEK-SPELAAFCLDYLL 184 (278)
T ss_pred cccchHHHHHHHHHHHHhh-CcHHHHHHHHHHH
Confidence 2334555555555 333 3345555555554
No 316
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.71 E-value=57 Score=23.09 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++...+++.|+.++..-- .++..+.+.++.-.|.++++++...
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 344455556665544332 3455566666666667777666654
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.70 E-value=28 Score=19.88 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhh
Q 037164 68 MILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101 (250)
Q Consensus 68 i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~ 101 (250)
--++.+.|++++|.+..+.+.+ +.|+..-...
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 3455666666666666666554 3555544433
No 318
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.59 E-value=63 Score=25.19 Aligned_cols=80 Identities=10% Similarity=-0.098 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh----cCC-CCCchhHhhhHHHHHhcCChhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEE----KSI-NGDQFTLGIRPSAYAAASDIHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~gi-~p~~~ty~~li~~~~~~~~~~~a~ 116 (250)
+++|.+.|...... +--....--+-.-|.+.|++++|.++|+.+.. .|. .+...+...+..|+.+.|+.+...
T Consensus 161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66666666655442 12223334555668999999999999998732 333 234556667788889999988887
Q ss_pred HHHHHHh
Q 037164 117 KIINMTE 123 (250)
Q Consensus 117 ~~~~~m~ 123 (250)
.+-=++.
T Consensus 239 ~~~leLl 245 (247)
T PF11817_consen 239 TTSLELL 245 (247)
T ss_pred HHHHHHh
Confidence 7765543
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.99 E-value=64 Score=23.39 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc
Q 037164 166 KDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN 232 (250)
Q Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 232 (250)
..+++.++..++-+.+ +...++-.. .+...|++++|..+|+++.... |.......|+..|...
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 3445555555555544 222333333 3467788888888888876432 3333344455444443
No 320
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.91 E-value=1e+02 Score=25.85 Aligned_cols=103 Identities=9% Similarity=-0.061 Sum_probs=47.1
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhccccc---cc-h-----hHHHHHHHHHHHCCCCccHH--HHHHHHHHHhhcCChhh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLF---FG-V-----GKAEMVVQEMKDMGFARRTI--YCYIMMILNYLTGNREK 79 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~~---y~-~-----~~A~~~~~~m~~~~~~p~~~--~y~~li~~~~~~g~~~~ 79 (250)
|..-++.|.++-+..+++.-. .++... ++ + ..-.++.+.+.+.|..|+.. .....+...++.|+.+.
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~--~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGI--NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 344455677776666665311 122221 11 1 12234556666666555432 11233445556677666
Q ss_pred HHHHHHHHHhcCCCCCch---hHhhhHHHHHhcCChhHHHHHH
Q 037164 80 IDALMLEMEEKSINGDQF---TLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~---ty~~li~~~~~~~~~~~a~~~~ 119 (250)
+..+++ .|...+.. .-.+.+...+..|+.+-+..++
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll 122 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLI 122 (413)
T ss_pred HHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHH
Confidence 555554 33222111 1234455555566654444333
No 321
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=59.70 E-value=46 Score=21.70 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.+...+.+..+....- ...|++.|+.++.+.|.-.-|+.+-+.+..+|
T Consensus 47 ~eq~~qmL~~W~~~~G--~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTG--RKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 6667777777764322 24668888888888888888888877777766
No 322
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.60 E-value=91 Score=25.04 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
-.++..+.+.++.....+.+..++. ...-...|......|++..|.+++.+...
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344455555555666666665542 44455567777888999999888887765
No 323
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=59.41 E-value=1.1e+02 Score=26.03 Aligned_cols=150 Identities=13% Similarity=0.009 Sum_probs=79.9
Q ss_pred CCchhHhhh-HHHHHhcCChhHHHHHHHHHhhCCCCCccHH------HHHHH-HHHHHHHHHHHHhhhhccCC-chhhhc
Q 037164 94 GDQFTLGIR-PSAYAAASDIHGMDKIINMTESNPQMVLDFN------LLAVL-LYMAMTMLKKSEGLIATKRN-SSNAFE 164 (250)
Q Consensus 94 p~~~ty~~l-i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~------~~~~l-~~~a~~~~~~~~~~~~~~~~-~~~~~~ 164 (250)
|...+|-.| ..++.-.|++++|.++--...+-.-...+.. .|... .+++...|++..+....... .. ++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~-~~~ 244 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS-ASM 244 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh-Hhh
Confidence 555666665 3677778888888777554433201111100 01111 56666666655422211110 01 221
Q ss_pred ----------------chhHHHHHHHHHhccCC-------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 037164 165 ----------------LKDQLYRIWKHYGQTRK-------VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221 (250)
Q Consensus 165 ----------------~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 221 (250)
+.|.+..+.+.+.+... ++...|...-....+.|+.++|+.--+...+ +. +..+
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD-~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--ID-SSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cC-HHHH
Confidence 67777788888766533 3334455555667778888888877766542 11 1233
Q ss_pred hHHHHHHHH--hcCChhHHHHHHHHHHh
Q 037164 222 PSSLIDAHC--KNGLLEKAQSLINHAET 247 (250)
Q Consensus 222 ~~~li~~~~--~~g~~~~a~~~~~~m~~ 247 (250)
+..+.++-| ..+.|++|.+-+++..+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444333 34677788777776654
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.56 E-value=1e+02 Score=25.41 Aligned_cols=79 Identities=5% Similarity=-0.048 Sum_probs=40.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-ccHHHHHHHHHHHH
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV-LDFNLLAVLLYMAM 143 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~l~~~a~ 143 (250)
-|.-+-.+.|+..+|.+.|+.+.+. .+..-...-..||.++....-+..+..++-+-..- ..+ ....+|++.+-++.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTAALLKTR 358 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHHHHHHHH
Confidence 3444445678888888888775443 11111122345677777666666666665544433 222 22345555544444
Q ss_pred HH
Q 037164 144 TM 145 (250)
Q Consensus 144 ~~ 145 (250)
.+
T Consensus 359 AV 360 (556)
T KOG3807|consen 359 AV 360 (556)
T ss_pred HH
Confidence 33
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.72 E-value=83 Score=27.41 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.....++|.-++...--|+.+...+.| +...|+++.+...+...... +.....+-.+++....+.|+++.|..+-..
T Consensus 306 ~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 306 IAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 334456677776655556655555544 46789999999998865543 455678889999999999999999999998
Q ss_pred HhhCCCCC-ccHHHHHHH-------HHHHHHHHHHHHhhhhc
Q 037164 122 TESNPQMV-LDFNLLAVL-------LYMAMTMLKKSEGLIAT 155 (250)
Q Consensus 122 m~~~~g~~-~~~~~~~~l-------~~~a~~~~~~~~~~~~~ 155 (250)
|... .++ |...+..+. .+++...+++......|
T Consensus 383 ~l~~-eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 383 MLSN-EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred Hhcc-ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8876 564 333333333 67777777776544333
No 326
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.43 E-value=56 Score=27.46 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 037164 192 GLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.+|...|+++.|...|+++..
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHH
Confidence 456666666666666666653
No 327
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.76 E-value=26 Score=23.43 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
.++..+...+..-.|.++++.+...+...+..|.-..++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666666778888888877776667777666777777776543
No 328
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.13 E-value=1.2e+02 Score=27.87 Aligned_cols=68 Identities=6% Similarity=0.022 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHH-HHHHHHHhhcCChhhHHHHHHHHH-hcCCCCCchhHhhhHHHHHhc
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYC-YIMMILNYLTGNREKIDALMLEME-EKSINGDQFTLGIRPSAYAAA 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y-~~li~~~~~~g~~~~a~~~~~~m~-~~gi~p~~~ty~~li~~~~~~ 109 (250)
+.+.....+.|.+..-.|+..+- -.+-..|...|++++|+++--.-. .-.+.++...+.+++.-|...
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~ 108 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM 108 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH
Confidence 55566666666655433432222 334467899999999998876543 335778888888877655543
No 329
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.10 E-value=71 Score=22.72 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=62.5
Q ss_pred HHHCCCCccH--HHHHHHHHHHhhcCChhhHHHHHHHHHhcC---C--CCCchhHhhhHHHHHhcCC-hhHHHHHHHHHh
Q 037164 52 MKDMGFARRT--IYCYIMMILNYLTGNREKIDALMLEMEEKS---I--NGDQFTLGIRPSAYAAASD-IHGMDKIINMTE 123 (250)
Q Consensus 52 m~~~~~~p~~--~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---i--~p~~~ty~~li~~~~~~~~-~~~a~~~~~~m~ 123 (250)
|.+.+..++. ...|.+++-.+.-+++..+..+++.+..-. + .-+..+|.+++++.++... --.+..+|+-++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4545566665 346888888888999999999998874321 1 2366789999999977776 556788889898
Q ss_pred hCCCCCccHHHHHHH
Q 037164 124 SNPQMVLDFNLLAVL 138 (250)
Q Consensus 124 ~~~g~~~~~~~~~~l 138 (250)
+. +.+++..-|..+
T Consensus 108 ~~-~~~~t~~dy~~l 121 (145)
T PF13762_consen 108 KN-DIEFTPSDYSCL 121 (145)
T ss_pred Hc-CCCCCHHHHHHH
Confidence 76 778777776555
No 330
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.83 E-value=16 Score=17.40 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 037164 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLID 227 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 227 (250)
|+.+.|..+|+++... .+.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 5678888999988843 3355666665543
No 331
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=55.81 E-value=52 Score=21.04 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
++|+.-...|+.-|...|.+++....-.=-.+.+.++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555556666666666665555555555555566665543
No 332
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.23 E-value=85 Score=34.23 Aligned_cols=107 Identities=7% Similarity=-0.003 Sum_probs=62.9
Q ss_pred HhhhccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
.|-+.|.+++|..+++....+ ..+...|. +.=|.++-+.+.-..+......+-.++.+..+.-+|+..
T Consensus 2491 s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~~~llle~aWrlsdw~~~ 2570 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGNYELLLECAWRLSDWNDQ 2570 (3550)
T ss_pred HHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeehhccCCcchhH
Confidence 567789999999999987666 22333344 444555544443322334556677778888888888888
Q ss_pred HHHHHHHHhcCCCCCc-----hhHhhhHHHHHhcCC-hhHHHHHHHH
Q 037164 81 DALMLEMEEKSINGDQ-----FTLGIRPSAYAAASD-IHGMDKIINM 121 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~-----~ty~~li~~~~~~~~-~~~a~~~~~~ 121 (250)
...+..-. +..|+. .+|...+..+....+ ..+..+++++
T Consensus 2571 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e 2615 (3550)
T KOG0889|consen 2571 KDALEQKA--KSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGE 2615 (3550)
T ss_pred HHHHHHhh--hccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88777433 333333 445554444433332 3444444443
No 333
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=54.88 E-value=53 Score=22.66 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
++++.+.|..... .+-|+.--..-|. |+.. .+...++|..|.++||--.. ..|...-..+-..|++.+|.++|+
T Consensus 49 Lerc~~~f~~~~~--YknD~RyLkiWi~-ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRYLKIWLK-YADN--CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888887755 4455433233222 2221 24578899999999886544 456777788888999999999986
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.55 E-value=1.5e+02 Score=26.12 Aligned_cols=166 Identities=8% Similarity=-0.033 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
.|-...-+++..++...++.-+.-+..+|...|- +-..|-.++.+|... .-+.--.+++++.+. .+.-...+--..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~-dfnDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY-DFNDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cchhHHHHHHHH
Confidence 3445566777888888888888888888877543 677888888888887 456666677766554 332211111111
Q ss_pred -------HHHHHHHHHHHHhhhhccCCch---hhhc-----chhHHHHHHHHHhccC----C-CChhhHHHHHHHHHhcC
Q 037164 139 -------LYMAMTMLKKSEGLIATKRNSS---NAFE-----LKDQLYRIWKHYGQTR----K-VFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 139 -------~~~a~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g 198 (250)
..++...|.+...+.-|..... -.|. -.++.+.++.+.+... . .-...+.-+-.-|....
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 4455556666554443322211 0111 1223333333322221 1 33344444556667777
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH 229 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 229 (250)
++++|.+++..+..... -|+..-..+|.-+
T Consensus 220 N~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 220 NWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred CHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 77788887777664433 2444444454443
No 335
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=54.31 E-value=21 Score=18.03 Aligned_cols=24 Identities=4% Similarity=-0.047 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHH
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSS 224 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~ 224 (250)
.++.|..||+.... +.|++.+|..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 57899999999885 4688888754
No 336
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=54.23 E-value=70 Score=22.08 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCCCCC-cchHHHHHHHHhcCChhHHHHHHH
Q 037164 201 KGAEKTLRNWTSKNLPYDF-GLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 201 ~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
+++.++|..|.++|+-... ..|...-..+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5578899999988875543 446666667777899999999886
No 337
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.12 E-value=93 Score=23.48 Aligned_cols=175 Identities=9% Similarity=0.068 Sum_probs=100.7
Q ss_pred CCCCccHHHHHHHHHHHhhcCC----hhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHhcCChhHHHHHHHHHhhCC
Q 037164 55 MGFARRTIYCYIMMILNYLTGN----REKIDALMLEMEEKSINGDQF----TLGIRPSAYAAASDIHGMDKIINMTESNP 126 (250)
Q Consensus 55 ~~~~p~~~~y~~li~~~~~~g~----~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~~~~~~~a~~~~~~m~~~~ 126 (250)
.|..++...+|-++..+.+..- .+-+..+=.+....++.++-. ..-+=|.-|-+.||+.+.-.+|-..+.
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~-- 79 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM-- 79 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh--
Confidence 4777888999999888766544 444444444444455555443 333445678888999888888877665
Q ss_pred CCC--ccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC------CChhhHHHHHHHHHhcC
Q 037164 127 QMV--LDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK------VFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 127 g~~--~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g 198 (250)
|.+ -|...+. .--|..+.++... .|..+ |- .-.+ ...+.... +--.+--+++-.|-+.-
T Consensus 80 gce~~~dlq~~~--~~va~~Ltkd~Kd--k~~vP----Fc--eFAe---tV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~ 146 (233)
T PF14669_consen 80 GCEKFADLQRFC--ACVAEALTKDSKD--KPGVP----FC--EFAE---TVCKDPQNDEVDKTLLGRIGISLMYSYHKTL 146 (233)
T ss_pred hcCCHHHHHHHH--HHHHHHHHhcccc--cCCCC----HH--HHHH---HHhcCCccchhhhhhhhHHHHHHHHHHHHHH
Confidence 332 1222221 1222333333322 22222 11 0000 00111000 11122335667788888
Q ss_pred CHHHHHHHHHHHHhCCCC--------------CCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 199 DVKGAEKTLRNWTSKNLP--------------YDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
+..+..+++..|....+. +-..+.|.....+.++|.+|.|..++++
T Consensus 147 qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 147 QWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 889999988887643332 2456788889999999999999998873
No 338
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.46 E-value=74 Score=24.80 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWT----SKNL-PYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
-+-.-|.+.|++++|.++|+.+. +.|+ .+...+...+..++.+.|+.+....+-=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45578899999999999999874 2333 3455667778888888899888877765554
No 339
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.73 E-value=1.3e+02 Score=24.77 Aligned_cols=20 Identities=5% Similarity=0.205 Sum_probs=14.0
Q ss_pred CChhhHHHHHHHHHhcCCCC
Q 037164 75 GNREKIDALMLEMEEKSING 94 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi~p 94 (250)
++.+....++..+++++..|
T Consensus 36 ~~~~~~e~l~~~Ird~~Map 55 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP 55 (393)
T ss_pred cCHHHHHHHHHHHHhcccch
Confidence 46666777777777777655
No 340
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=52.66 E-value=38 Score=21.95 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHH
Q 037164 20 VEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTI 62 (250)
Q Consensus 20 ~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~ 62 (250)
+++|+++...|....+.+.+-+-.-|..+|.-+.+.|++.++.
T Consensus 25 IdKALDFIggMntSas~P~sMdESTAKGi~KyL~elGvPasa~ 67 (119)
T PF08986_consen 25 IDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAA 67 (119)
T ss_dssp HHHHHHHHHTS-TT-SS--HCCCHHHHHHHHHHHHCT----HH
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHH
Confidence 4667777777776666666666677777788888877765543
No 341
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.80 E-value=99 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc
Q 037164 190 MMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN 232 (250)
Q Consensus 190 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 232 (250)
.+-.|.+.|.+++|.+++++..+ .|+....-.-+....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 44578999999999999999875 34444444444444443
No 342
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.18 E-value=22 Score=24.09 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
-..+++.+...+..-.|.++++.+...+...+..|.-.-++.+.+.|-+.
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 34677888888888899999999998888888887777778888877654
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=50.58 E-value=59 Score=26.91 Aligned_cols=77 Identities=9% Similarity=-0.059 Sum_probs=55.4
Q ss_pred hhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164 162 AFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA 238 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 238 (250)
.|.+.+..+++++.+..... | +.+++..--.+|.+.+.+..|+.=-+..... --.-+.+|+|.+....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHHHH
Confidence 77788889999999877644 4 6688888889999999998887766655421 12456788887766666
Q ss_pred HHHHHHHH
Q 037164 239 QSLINHAE 246 (250)
Q Consensus 239 ~~~~~~m~ 246 (250)
..-..+..
T Consensus 178 Lg~~~EAK 185 (536)
T KOG4648|consen 178 LGNNMEAK 185 (536)
T ss_pred HhhHHHHH
Confidence 65555543
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.10 E-value=74 Score=21.16 Aligned_cols=85 Identities=8% Similarity=-0.092 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
-++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-.| +-.+.|..++...-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 46676776766655322 3333334445677888888888887754 47888888555 45677777777777777
Q ss_pred HhhCCCCCccHHHH
Q 037164 122 TESNPQMVLDFNLL 135 (250)
Q Consensus 122 m~~~~g~~~~~~~~ 135 (250)
|..+ |- |....|
T Consensus 94 la~s-g~-p~lq~F 105 (115)
T TIGR02508 94 LAAS-GD-PRLQTF 105 (115)
T ss_pred HHhC-CC-HHHHHH
Confidence 7665 33 444443
No 345
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.02 E-value=2.2e+02 Score=26.69 Aligned_cols=55 Identities=7% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 68 MILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 68 i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
|.-|........--.+++.+.+.|+. +...-+.||++|.+.+|.++-.++++...
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 33344444444455566666777775 55666789999999999999988887766
No 346
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.96 E-value=28 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.3
Q ss_pred cchhhHhhhccChhHHHHHHHHhhhh
Q 037164 8 PSRLNLIFEVHGVEQAEIYFDNISKL 33 (250)
Q Consensus 8 p~~l~~~~k~~~~~~a~~~f~~~~~~ 33 (250)
|++++.+.+|.-.++|.++++.+.+.
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKr 60 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKR 60 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 68899999999999999888888765
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.72 E-value=2.6e+02 Score=27.41 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=20.4
Q ss_pred CccHHHHHHHHHHHhhcC--ChhhHHHHHHHHHh
Q 037164 58 ARRTIYCYIMMILNYLTG--NREKIDALMLEMEE 89 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~ 89 (250)
.|+ .-.-.+|.+|.+.+ ..+.++....+.+.
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 45566777888877 56666666666554
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.57 E-value=61 Score=30.48 Aligned_cols=130 Identities=12% Similarity=-0.098 Sum_probs=73.4
Q ss_pred hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc---chhHHHHHH
Q 037164 97 FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE---LKDQLYRIW 173 (250)
Q Consensus 97 ~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 173 (250)
.-|..|+..|...|+.++|++++.+.... ..-...+....++..++++++......+-.. .|. -..+-+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~--~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~---~y~~wvl~~~p~~gi 579 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE--DSDTDSFQLDGLEKIIEYLKKLGAENLDLIL---EYADWVLNKNPEAGI 579 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc--ccccccchhhhHHHHHHHHHHhcccchhHHH---HHhhhhhccCchhhe
Confidence 35889999999999999999999998764 2101112222234444444443311111111 222 111111122
Q ss_pred HHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc
Q 037164 174 KHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN 232 (250)
Q Consensus 174 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 232 (250)
+.+..... ..... -.-+-.|++....+-+...++.+....-.++...++.++..|+..
T Consensus 580 ~Ift~~~~~~~~sis-~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 580 QIFTSEDKQEAESIS-RDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred eeeeccChhhhccCC-HHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 22222000 00011 123345667778889999999999877788889999999998874
No 349
>PRK09462 fur ferric uptake regulator; Provisional
Probab=49.56 E-value=60 Score=22.94 Aligned_cols=62 Identities=6% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHhccCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 175 HYGQTRKVFNKGYMTMMGLLLKL-DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 175 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
.++..+..-+.--..++..+... +..-.|.++++.+...+...+..|.-.-++.+...|-+.
T Consensus 7 ~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444333344455677777765 467788999999887777777777777777777777653
No 350
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.36 E-value=66 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=13.4
Q ss_pred CCchhHhhhHHHHHhcCChhHH
Q 037164 94 GDQFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 94 p~~~ty~~li~~~~~~~~~~~a 115 (250)
-|+..|..++.+|.-.|+...+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 3566666666666666655443
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.24 E-value=2e+02 Score=25.62 Aligned_cols=83 Identities=13% Similarity=-0.068 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHH----HH-HhhcCChhhHHHHHHHHHh-------cCCCCCchhHhhhHHHHHhc
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMM----IL-NYLTGNREKIDALMLEMEE-------KSINGDQFTLGIRPSAYAAA 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li----~~-~~~~g~~~~a~~~~~~m~~-------~gi~p~~~ty~~li~~~~~~ 109 (250)
...|..+++...+.|. ...-..+. .+ ++...|++.|..+|+...+ .| +.....-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3578888888888763 22222222 22 4577899999999999877 55 334555566666654
Q ss_pred C-----ChhHHHHHHHHHhhCCCCCcc
Q 037164 110 S-----DIHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 110 ~-----~~~~a~~~~~~m~~~~g~~~~ 131 (250)
. +.+.|.+++...-.. |.+..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~-g~~~a 327 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL-GNPDA 327 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc-CCchH
Confidence 3 566788888877666 66443
No 352
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.52 E-value=74 Score=20.39 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 195 LKLDDVKGAEKTLRNWTS----KNLPYD----FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 195 ~~~g~~~~A~~~~~~m~~----~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+.|++..|.+-+...-+ .+..++ ....-.+...+...|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777777555555432 222221 11122344456667888888888887764
No 353
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=47.45 E-value=53 Score=20.84 Aligned_cols=43 Identities=33% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
+..+.+..++..+....- ...|...|+.++.+.|.-+-|..+|
T Consensus 44 ~~~eq~~~mL~~W~~r~g--~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 44 DIKMQAKQLLVAWQDREG--SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred CHHHHHHHHHHHHHHhcC--ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 346778888888886532 3468889999999999888887765
No 354
>PF15469 Sec5: Exocyst complex component Sec5
Probab=47.07 E-value=1.1e+02 Score=22.39 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred cchhhHhhhccChhHHHHHHHHhhhhhc----cccccc--hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH
Q 037164 8 PSRLNLIFEVHGVEQAEIYFDNISKLLR----QCLFFG--VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID 81 (250)
Q Consensus 8 p~~l~~~~k~~~~~~a~~~f~~~~~~~~----~~~~y~--~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 81 (250)
|..|.-+-+.|+++.+.+.+........ ....+. ..++..+.+++++ ..|..|...- ...++..
T Consensus 90 P~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~-------~l~~~L~~~~---~s~~~~~ 159 (182)
T PF15469_consen 90 PSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE-------KLWEKLLSPP---SSQEEFL 159 (182)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCC---CCHHHHH
Confidence 6566666667777777777766655411 122222 3333333333332 2233332222 3455566
Q ss_pred HHHHHHHhcCCCCCchh
Q 037164 82 ALMLEMEEKSINGDQFT 98 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~t 98 (250)
+++..+.+-|..+|+..
T Consensus 160 ~~i~~Ll~L~~~~dPi~ 176 (182)
T PF15469_consen 160 KLIRKLLELNVEEDPIW 176 (182)
T ss_pred HHHHHHHhCCCCCCHHH
Confidence 66666666666555543
No 355
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=46.33 E-value=18 Score=21.54 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=8.2
Q ss_pred cCChhhHHHHHHHHHh
Q 037164 74 TGNREKIDALMLEMEE 89 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~ 89 (250)
..|++.|...|.++++
T Consensus 38 ~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 38 NWDYERALKNFTELKS 53 (63)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4445555555555554
No 356
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=46.18 E-value=13 Score=21.40 Aligned_cols=34 Identities=6% Similarity=-0.093 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Q 037164 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK 231 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 231 (250)
|-..+...+|+.|-++...|....||..++-|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 4456788899999988889999999988887765
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.02 E-value=91 Score=21.00 Aligned_cols=77 Identities=9% Similarity=0.007 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|..+.+.+...+. -...+--+-+..+.+.|++++| +.+ -...-.||...|-+| +-.+.|..+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAAL--CAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 5788888888887754 3334444555667889999999 221 223345788877444 56788889999999888
Q ss_pred HhhC
Q 037164 122 TESN 125 (250)
Q Consensus 122 m~~~ 125 (250)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 8665
No 358
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=45.53 E-value=37 Score=20.79 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=27.5
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC
Q 037164 72 YLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~ 111 (250)
.-.|+.+.+.+++++..+.|+.|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3466778888888887777777777777777666655543
No 359
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=44.70 E-value=40 Score=27.76 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=32.7
Q ss_pred ccchhhHhhhccChhHHHHHHHHhhhh---hccccccc--hhHHHHHHHHHH
Q 037164 7 IPSRLNLIFEVHGVEQAEIYFDNISKL---LRQCLFFG--VGKAEMVVQEMK 53 (250)
Q Consensus 7 ~p~~l~~~~k~~~~~~a~~~f~~~~~~---~~~~~~y~--~~~A~~~~~~m~ 53 (250)
+|.+++.|.+.|.+++|.++...+..- .|+..... ..++......|.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml 160 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQML 160 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 379999999999999999999887655 45544333 444444444443
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.15 E-value=95 Score=20.68 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=28.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
++++.+.|+++.|..+.+.. ..||..-|-+|-. .+.|.-+.+..-+.+|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 35566666777766666543 3566655554432 34455555555555554443
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=44.05 E-value=1.4e+02 Score=22.73 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=10.7
Q ss_pred HhhcCChhhHHHHHHHHHhc
Q 037164 71 NYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~ 90 (250)
+.+.|+.++|.+.|..+...
T Consensus 175 ~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 175 NRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHhCCHHHHHHHHHHHHcC
Confidence 44555555555555555444
No 362
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.75 E-value=1e+02 Score=25.89 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=42.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHh--cCChhHHHHHHHHHHh
Q 037164 190 MMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG--LPSSLIDAHCK--NGLLEKAQSLINHAET 247 (250)
Q Consensus 190 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~ 247 (250)
....+.+.+++..|.++|+.+... ++++.. .+..|..+|.. .-++++|.+.++....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566899999999999999976 555554 55666666554 6778899999887654
No 363
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=43.53 E-value=53 Score=20.17 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
..+.+..++..+... .....+...|+.++.+.|+.+-|..+-+
T Consensus 39 ~~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~~ 81 (83)
T PF00531_consen 39 LREQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIEQ 81 (83)
T ss_dssp HHHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHHh
Confidence 346677778777755 3445678888888888888777766544
No 364
>PRK12928 lipoyl synthase; Provisional
Probab=42.50 E-value=1.1e+02 Score=24.62 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=12.3
Q ss_pred hhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 101 IRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.+.....+...+++..++++.+.+.
T Consensus 176 ~vl~~m~r~~t~e~~le~l~~ak~~ 200 (290)
T PRK12928 176 RLQKAVRRGADYQRSLDLLARAKEL 200 (290)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 3344444444555555555555543
No 365
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=42.20 E-value=2.2e+02 Score=24.38 Aligned_cols=110 Identities=14% Similarity=-0.034 Sum_probs=72.5
Q ss_pred hHhhhccChhHHHHHHHHhhhhh---------ccccccc---hhHHHHHHHHHHHCCCCccHHHHHH-------------
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLL---------RQCLFFG---VGKAEMVVQEMKDMGFARRTIYCYI------------- 66 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~---------~~~~~y~---~~~A~~~~~~m~~~~~~p~~~~y~~------------- 66 (250)
.++.-.|+.++|.+.=..+.+.. .+...|. .+.|...|++-+..+ |+...--+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 35566677777777666555441 1111222 888888888877654 54333222
Q ss_pred HHHHHhhcCChhhHHHHHHHHHh---cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 67 MMILNYLTGNREKIDALMLEMEE---KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~---~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
=-+-..+.|++.+|.+.+.+-.. +++.|+...|-..-....+.|+.++|..--++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 12334678899999999987654 3566777778888888888999988887766654
No 366
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.04 E-value=1.9e+02 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.++++.|++.++.|.-+.+.=+.-.+.+.=.+..+..+++.+...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 466777777777777766655555555666677777777777655
No 367
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=41.37 E-value=1e+02 Score=20.78 Aligned_cols=73 Identities=10% Similarity=-0.084 Sum_probs=31.4
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc---hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG---VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALML 85 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 85 (250)
.+|..=-.-.+.++..++++++.+........+ .+.-...|..++...+.| .-.|.||.+-|-+.....-|.
T Consensus 32 LvI~~~Ltkeevee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~-----~eti~Al~~Qgl~~~lM~ef~ 106 (113)
T PF08963_consen 32 LVIRKGLTKEEVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDV-----HETIEALLRQGLFQPLMTEFK 106 (113)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-H-----HHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCH-----HHHHHHHHHccCcHHHHHHHH
Confidence 444444444555556666666555422222222 444455555555443332 233445555555544444333
Q ss_pred H
Q 037164 86 E 86 (250)
Q Consensus 86 ~ 86 (250)
.
T Consensus 107 ~ 107 (113)
T PF08963_consen 107 K 107 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.03 E-value=2.8e+02 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS 110 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~ 110 (250)
.+|.-|.|+|++++|.++..+.++. +......+-..+..|....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 5677788999999999999654443 5556677777788887754
No 369
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.92 E-value=1.5e+02 Score=22.10 Aligned_cols=109 Identities=8% Similarity=0.024 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHH-HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhH-H--HHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYC-YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP-S--AYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y-~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li-~--~~~~~~~~~~a~~ 117 (250)
.++|+.-|..+.+.|...-++.- --.-...+..|+...|...|++.-...-.|-+.-=..-+ . .+...|.++.+..
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~s 153 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSS 153 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHH
Confidence 68899999999887754322211 112234578999999999999987765555544212222 2 3456788888888
Q ss_pred HHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHh
Q 037164 118 IINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEG 151 (250)
Q Consensus 118 ~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~ 151 (250)
-.+-+... +-+.-.+.--+| +.+|...|.....
T Consensus 154 rvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 154 RVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88877665 555555554455 7888888888774
No 370
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.45 E-value=1.7e+02 Score=22.68 Aligned_cols=73 Identities=12% Similarity=-0.041 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHh-hCCCCCccHHHHHHH
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTE-SNPQMVLDFNLLAVL 138 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~-~~~g~~~~~~~~~~l 138 (250)
-+..|+.+.+.+...+++....+-.+. +| |..+=..+++.+|-.|++++|..-++-.- -.+...+...+|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 344556666677777777776654333 23 33344456677777777777766555432 122444455555444
No 371
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=40.42 E-value=56 Score=23.04 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=17.5
Q ss_pred chhhHhhhccChhHHHHHHHHhhh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISK 32 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~ 32 (250)
+.+.-+++.|.++--.++|+++..
T Consensus 7 s~i~nla~ig~i~ll~~~ye~vii 30 (157)
T COG2405 7 SPIINLANIGEIDLLHALYEKVII 30 (157)
T ss_pred hhHHHHHhcchhhHHHHHhhcccC
Confidence 456667788888888888877543
No 372
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.29 E-value=1.4e+02 Score=21.68 Aligned_cols=60 Identities=8% Similarity=-0.121 Sum_probs=28.7
Q ss_pred HHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCCh
Q 037164 52 MKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDI 112 (250)
Q Consensus 52 m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~ 112 (250)
++..|++++..-- .++.......+.-.|.++++.+++.+..++..|----|+.+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444555443333 22222223344555666666666665555555444444555554443
No 373
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.94 E-value=95 Score=20.62 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHhcC
Q 037164 77 REKIDALMLEMEEKS 91 (250)
Q Consensus 77 ~~~a~~~~~~m~~~g 91 (250)
.-.|.++++.+++.+
T Consensus 16 ~~sa~ei~~~l~~~~ 30 (116)
T cd07153 16 HLTAEEIYERLRKKG 30 (116)
T ss_pred CCCHHHHHHHHHhcC
Confidence 333444444444443
No 374
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=39.38 E-value=31 Score=29.26 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=49.2
Q ss_pred cchhhHhhhccChhHHHHHHHHhhhhhccc------cccc--------------------hhHHHHHHHHHHHCCCCcc-
Q 037164 8 PSRLNLIFEVHGVEQAEIYFDNISKLLRQC------LFFG--------------------VGKAEMVVQEMKDMGFARR- 60 (250)
Q Consensus 8 p~~l~~~~k~~~~~~a~~~f~~~~~~~~~~------~~y~--------------------~~~A~~~~~~m~~~~~~p~- 60 (250)
|+-||.|.|.+++++|.+-+++-.+...+. ..++ -..|..+|+-+...|+...
T Consensus 51 p~TiDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhG~~~~R~v~~~v~~PvQvRHGtpdarlL~e~~~a~G~ta~E 130 (441)
T PF06368_consen 51 PLTIDSYTRQNDYEEAERGLEESIETGRSMLNGFPLVNHGVETCRKVLEAVDFPVQVRHGTPDARLLAEIALASGFTAFE 130 (441)
T ss_dssp EEEB-HHHHTT-HHHHHHHHHHHHHHTS--SSSB-HHHHHHHHHHHHHHH-SS-EEEE---SS-HHHHHHHHHTT--EEE
T ss_pred ceeeecccccccHHHHHHHHHhchhcCcccccCCccccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCccC
Confidence 578999999999999999997665531111 1222 3455566666666654322
Q ss_pred --HHHHHHHHHHHhh-------cCChhhHHHHHHHHHhcCCCCCchhHhhh
Q 037164 61 --TIYCYIMMILNYL-------TGNREKIDALMLEMEEKSINGDQFTLGIR 102 (250)
Q Consensus 61 --~~~y~~li~~~~~-------~g~~~~a~~~~~~m~~~gi~p~~~ty~~l 102 (250)
..+||. -|++ ..+|..+.+++....+.|+.+|..+|.-|
T Consensus 131 GG~ISYnl---PY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGpL 178 (441)
T PF06368_consen 131 GGPISYNL---PYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGPL 178 (441)
T ss_dssp --TTTTTT---TT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TTT
T ss_pred CCceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCCC
Confidence 233332 1222 23466677777777889999988888653
No 375
>PHA02148 hypothetical protein
Probab=39.32 E-value=95 Score=19.88 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=19.2
Q ss_pred CCCccHH--HHHHHHHHHHHHHHHHHhhhhccCC
Q 037164 127 QMVLDFN--LLAVLLYMAMTMLKKSEGLIATKRN 158 (250)
Q Consensus 127 g~~~~~~--~~~~l~~~a~~~~~~~~~~~~~~~~ 158 (250)
.++|... +...+-.+|.++|++++.++..+..
T Consensus 18 ~i~P~v~~~~i~~~k~~A~E~FK~iE~RIA~D~~ 51 (110)
T PHA02148 18 KIEPTVTPLPISDLKVEAFELFKKIEERIAHDQT 51 (110)
T ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHHHHhccHH
Confidence 4555443 4444566677777777776655544
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.32 E-value=2.1e+02 Score=23.30 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHH-------h-cCCC----CCchhHhhhHHHHHhc
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEME-------E-KSIN----GDQFTLGIRPSAYAAA 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~-------~-~gi~----p~~~ty~~li~~~~~~ 109 (250)
-.+|+++|.-+.+.. --.++=+-+|.++-...+..+|...+.... + .|.. -+...|..=... -.
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~--~k 224 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGL--PK 224 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCC--cc
Confidence 789999999987753 234566777888888888887777665321 1 0111 000111000000 00
Q ss_pred CChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHH
Q 037164 110 SDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMT 189 (250)
Q Consensus 110 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (250)
-|+.+.+...+++.+. + .+ ++++.++.........+... . .|. .+.=+++.+++ ..+.+.
T Consensus 225 ~Dv~e~es~~rqi~~i-n--lt-------ide~kelv~~ykgdyl~e~~-y-~Wa-edererle~ly-------~kllgk 284 (361)
T COG3947 225 YDVQEYESLARQIEAI-N--LT-------IDELKELVGQYKGDYLPEAD-Y-PWA-EDERERLEQLY-------MKLLGK 284 (361)
T ss_pred ccHHHHHHHhhhhhcc-c--cC-------HHHHHHHHHHhcCCcCCccc-c-ccc-cchHHHHHHHH-------HHHHHH
Confidence 1222333333333322 1 11 33444444444333322221 0 111 11111222211 123445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 190 MMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 190 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.-..|.++|.+.+|..+.+.... =.+.+...|-.|+..|...|+--.|.+-++++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~lt-ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALT-LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 55788999999999999888763 3456778888899999999987777666666543
No 377
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.01 E-value=71 Score=19.13 Aligned_cols=48 Identities=8% Similarity=-0.155 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAY 106 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~ 106 (250)
.|....++-++..+++-.-.+.+...+++..++|.. +..+|---+..+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~L 52 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSL 52 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 345566677777777766677777777776666653 344443333333
No 378
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.00 E-value=1.2e+02 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLP 216 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~ 216 (250)
++|+-+.++...++|+++++-|...|--
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEI 93 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEI 93 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC
Confidence 6778888889999999999999977643
No 379
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=38.95 E-value=2.5e+02 Score=24.00 Aligned_cols=222 Identities=13% Similarity=0.028 Sum_probs=127.4
Q ss_pred ccChhHHHHHHHHhhhhhccccccc-------------hhHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhcCChhhHHH
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFG-------------VGKAEMVVQEMKDMGFARR-TIYCYIMMILNYLTGNREKIDA 82 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~ 82 (250)
.|+.+.|.+-|+.|... |-....+ -+.|..+-+...+. .|. .-.+.+++...|..|+|+.|++
T Consensus 133 eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHH
Confidence 59999999999999875 2222222 44454444444432 333 4678999999999999999999
Q ss_pred HHHHHHhc-CCCCCchh--HhhhHHHHHh---cCChhHHHHHHHHH-hhCCCCCccHHHHHHH------HHHHHHHHHHH
Q 037164 83 LMLEMEEK-SINGDQFT--LGIRPSAYAA---ASDIHGMDKIINMT-ESNPQMVLDFNLLAVL------LYMAMTMLKKS 149 (250)
Q Consensus 83 ~~~~m~~~-gi~p~~~t--y~~li~~~~~---~~~~~~a~~~~~~m-~~~~g~~~~~~~~~~l------~~~a~~~~~~~ 149 (250)
+.+.-++. -+.+++.- =..|+.+-+. ..|...|...-.+. +-.+++.|....-... +.++-.+++.+
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 99987654 34455432 2233332222 12344455444333 3334555554433333 66666777766
Q ss_pred Hhh-hhccCCchhhhc-------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 037164 150 EGL-IATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221 (250)
Q Consensus 150 ~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 221 (250)
-+. -+|... . .|. -.+.+.++-. +..+.+-+..+-..+..+-...|++..|..--+... ...|....
T Consensus 290 WK~ePHP~ia-~-lY~~ar~gdta~dRlkRa~~-L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~ 364 (531)
T COG3898 290 WKAEPHPDIA-L-LYVRARSGDTALDRLKRAKK-LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESA 364 (531)
T ss_pred HhcCCChHHH-H-HHHHhcCCCcHHHHHHHHHH-HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhH
Confidence 532 233332 2 444 2233333322 233333344666677788888888877766554443 24566666
Q ss_pred hHHHHHHHHh-cCChhHHHHHHHHHH
Q 037164 222 PSSLIDAHCK-NGLLEKAQSLINHAE 246 (250)
Q Consensus 222 ~~~li~~~~~-~g~~~~a~~~~~~m~ 246 (250)
|..|-+.-.. .|+-+++...+-+..
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHh
Confidence 7666655433 488887777766554
No 380
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.84 E-value=3.3e+02 Score=25.42 Aligned_cols=55 Identities=4% Similarity=-0.249 Sum_probs=40.9
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCC---CchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSING---DQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p---~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.=+.+.+.+++|+...+ ...|..| -...+...|+.+.-.|++++|-+..-.|...
T Consensus 364 ~Wll~~k~yeeAl~~~k--~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAK--ASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred HHHHHhhHHHHHHHHHH--hccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 34456777888887777 4455666 3456788899999999999999888888754
No 381
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=38.76 E-value=1.2e+02 Score=24.69 Aligned_cols=24 Identities=4% Similarity=-0.076 Sum_probs=13.0
Q ss_pred hhHHHHHhcCChhHHHHHHHHHhh
Q 037164 101 IRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.+.....+...++.-+++++.+++
T Consensus 179 ~l~~~vrr~~t~e~~Le~l~~ak~ 202 (302)
T TIGR00510 179 RLTPFVRPGATYRWSLKLLERAKE 202 (302)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHH
Confidence 334444444556666666666654
No 382
>PRK09857 putative transposase; Provisional
Probab=38.66 E-value=2.1e+02 Score=23.08 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
+..++....+.++.++-.++++..... .+......-++.+-+.+.|..+++.++..+|...|+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445666666777777778888777644 333444455677777778888888888999988874
No 383
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=38.60 E-value=92 Score=22.99 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 82 ALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 82 ~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++++.+.+ .|+.|...++.-++..|++.-.++.+.++++.+...
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~e 196 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAE 196 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Confidence 45555564 777777777777777777777777777777776555
No 384
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=38.33 E-value=76 Score=21.81 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=28.0
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMK 53 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~ 53 (250)
.++....+.|-+++....++-+..+....++|+-+.|.++++.+.
T Consensus 64 ~~ir~A~~~glI~d~~~W~~ml~~RN~tsHtYde~~a~~i~~~I~ 108 (123)
T TIGR01987 64 DVLKEAFRAGLIGDESLWIAMLDDRNITSHTYDQEKAREIYAQIR 108 (123)
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence 555556666666666655555555556666777666666666664
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.22 E-value=1.3e+02 Score=22.95 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=22.1
Q ss_pred hhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164 185 KGYMTMM-GLLLKLDDVKGAEKTLRNWTSKNLPY 217 (250)
Q Consensus 185 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~ 217 (250)
.+..-|| ....+.|+.++|.+.|.+....+..+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3444444 55677788888888888888654443
No 386
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=37.55 E-value=77 Score=26.09 Aligned_cols=21 Identities=0% Similarity=-0.138 Sum_probs=11.0
Q ss_pred hHHHHHhcCChhHHHHHHHHH
Q 037164 102 RPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m 122 (250)
|++.|.+.|.+++|.++..-.
T Consensus 112 Lm~~ci~~g~y~eALel~~~~ 132 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAHV 132 (338)
T ss_pred HHHHHHhcccHhhHHHHHHHH
Confidence 455555555555555554443
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.22 E-value=3e+02 Score=24.52 Aligned_cols=80 Identities=14% Similarity=-0.064 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHH-------CCCCccHHHHHHHHHHHhhcC-----ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh-
Q 037164 42 VGKAEMVVQEMKD-------MGFARRTIYCYIMMILNYLTG-----NREKIDALMLEMEEKSINGDQFTLGIRPSAYAA- 108 (250)
Q Consensus 42 ~~~A~~~~~~m~~-------~~~~p~~~~y~~li~~~~~~g-----~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~- 108 (250)
.+.|..+|+...+ .| +....+-+-.+|.+-. +.+.|++++..--+.|. |+....-..+.....
T Consensus 265 ~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 265 LESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTK 340 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCc
Confidence 5555555555544 33 2223444444444422 33445555555444443 233332222222222
Q ss_pred cCChhHHHHHHHHHhhC
Q 037164 109 ASDIHGMDKIINMTESN 125 (250)
Q Consensus 109 ~~~~~~a~~~~~~m~~~ 125 (250)
-.|...|.++|...-..
T Consensus 341 ~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cccHHHHHHHHHHHHHc
Confidence 23444555555555444
No 388
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.86 E-value=1.5e+02 Score=20.90 Aligned_cols=15 Identities=0% Similarity=-0.117 Sum_probs=7.4
Q ss_pred ChhHHHHHHHHHhhC
Q 037164 111 DIHGMDKIINMTESN 125 (250)
Q Consensus 111 ~~~~a~~~~~~m~~~ 125 (250)
..-.|.++++.+.+.
T Consensus 32 ~h~sa~eI~~~l~~~ 46 (148)
T PRK09462 32 HHVSAEDLYKRLIDM 46 (148)
T ss_pred CCCCHHHHHHHHHhh
Confidence 344555555555443
No 389
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.37 E-value=99 Score=20.15 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
...|+..|+.++.+.|.-..|+.+-+.+.+.|.
T Consensus 63 ~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 63 RKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred CCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 357799999999999999999999888876653
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.33 E-value=2.3e+02 Score=22.86 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHh--cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCC
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEE--KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQM 128 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~--~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~ 128 (250)
+..=|.+++..++|.+++...-+--+ .+++|.+.-..+ -.|.+.+....+.++-......++-
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~p~N 150 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQDPSN 150 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhCccc
Confidence 44557889999999998876665433 356666655544 4588999999999998888766333
No 391
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.04 E-value=74 Score=20.10 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=15.7
Q ss_pred hhHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 037164 185 KGYM-TMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 185 ~~~~-~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
..|| ++++-+.++.-.++|+++++-|.
T Consensus 31 ~gy~PtV~D~L~rCdT~EEAlEii~yle 58 (98)
T COG4003 31 SGYNPTVIDFLRRCDTEEEALEIINYLE 58 (98)
T ss_pred CCCCchHHHHHHHhCcHHHHHHHHHHHH
Confidence 4443 45555566666666666666555
No 392
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=35.69 E-value=1.2e+02 Score=20.46 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
+..++..+.+.|+.-|..-.-..+....+.+ -..-..+-.++.++||.
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~-~~G~~~I~~~L~~kGi~ 58 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRSRLRRK-GKGPRRIRQKLKQKGID 58 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-T--HHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccc-cccHHHHHHHHHHHCCC
Confidence 3444445555554444443344444433311 12333444444445543
No 393
>PRK11906 transcriptional regulator; Provisional
Probab=35.48 E-value=3e+02 Score=23.91 Aligned_cols=20 Identities=0% Similarity=-0.067 Sum_probs=9.4
Q ss_pred HHHHhcCChhHHHHHHHHHh
Q 037164 104 SAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~m~ 123 (250)
.+..-.++++.+..+|++..
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~ 365 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAK 365 (458)
T ss_pred HHHHhhcchhhHHHHHHHHh
Confidence 33344444555555555443
No 394
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=35.46 E-value=1.7e+02 Score=21.05 Aligned_cols=50 Identities=14% Similarity=-0.026 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 197 LDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.++.++++.++..|.- ..|. ...-..-..-+...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 5566666666666653 2222 111122223355566666666666665544
No 395
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=35.28 E-value=1.1e+02 Score=18.85 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=16.8
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCCch--hHhhhHHHHHhcCChh
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGDQF--TLGIRPSAYAAASDIH 113 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~--ty~~li~~~~~~~~~~ 113 (250)
..+..|+. ++++.+.+.|..|+.. .-.+.+...+..|+.+
T Consensus 32 ~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 32 YAAENGNL----EIVKLLLENGADINSQDKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred HHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence 33445553 3333444466655553 2223333344444433
No 396
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.10 E-value=3.5e+02 Score=24.59 Aligned_cols=99 Identities=11% Similarity=0.036 Sum_probs=53.6
Q ss_pred hhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
+.-.|+++.|..++..|++...+... .+-+-..+.++.++ +.+|..-- .....+.|+++.|.++..+..
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~~rt~va-~Fle~~g~~e~AL~--~s~D~d~r---Felal~lgrl~iA~~la~e~~----- 664 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKEIRTKVA-HFLESQGMKEQALE--LSTDPDQR---FELALKLGRLDIAFDLAVEAN----- 664 (794)
T ss_pred HhhhccccccccccccCchhhhhhHH-hHhhhccchHhhhh--cCCChhhh---hhhhhhcCcHHHHHHHHHhhc-----
Confidence 34468888888888887755222111 01111111122222 23332211 122345677777777666422
Q ss_pred CCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 94 GDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 94 p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+..-|..|-++....+++.-|.++|...+.
T Consensus 665 -s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 665 -SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred -chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 556677777777777777777777766543
No 397
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.78 E-value=1.3e+02 Score=19.99 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=15.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 221 (250)
-.|++.|+-+.|.+=|+.= +...|...+
T Consensus 80 lLys~~G~~e~a~~eFetE--KalFPES~~ 107 (121)
T COG4259 80 LLYSNSGKDEQAVREFETE--KALFPESGV 107 (121)
T ss_pred HHHhhcCChHHHHHHHHHh--hhhCccchh
Confidence 4556667777766666542 234444443
No 398
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.50 E-value=1e+02 Score=18.20 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHH-----HhcCChhHHHHHH
Q 037164 193 LLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH-----CKNGLLEKAQSLI 242 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~ 242 (250)
.+.+.|++-+|-++++..=.....+....+-.||... .+.|+.+.|.+++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3567888999999998864332333444555555543 3568888777664
No 399
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.19 E-value=1e+02 Score=20.68 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=11.6
Q ss_pred hHHHHHhcCChhHHHHHHHHHhhC
Q 037164 102 RPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++......+..-.|.++++.+...
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~ 36 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKK 36 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhc
Confidence 334444444455555555555544
No 400
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.18 E-value=2.2e+02 Score=22.03 Aligned_cols=79 Identities=9% Similarity=0.014 Sum_probs=54.8
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC---CchhHh--hhHHHHHhcCChhHHHHHHHHHhhCCCCCcc
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING---DQFTLG--IRPSAYAAASDIHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p---~~~ty~--~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~ 131 (250)
+.+...-+|.||--|.-...+.+|-+.|. ++.|+.| |..+++ .-|....+.|+++.|.+..+++... -+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccc
Confidence 45666777788777766666777777776 6777777 334443 3578889999999999999988654 45555
Q ss_pred HHHHHHH
Q 037164 132 FNLLAVL 138 (250)
Q Consensus 132 ~~~~~~l 138 (250)
...+-.+
T Consensus 99 ~~l~F~L 105 (228)
T KOG2659|consen 99 RELFFHL 105 (228)
T ss_pred hhHHHHH
Confidence 5444444
No 401
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.10 E-value=2.2e+02 Score=24.93 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchh
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFT 98 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~t 98 (250)
..+..++.+....+....++.++++|.+.|..|..+.
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344444444444444566777777776666655443
No 402
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=33.82 E-value=51 Score=27.29 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=28.1
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHH
Q 037164 70 LNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
-|.+.|.+++|...+.. ...+.| |.++|..-..+|.+...+..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~--~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYST--AIAVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhh--hhccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 35566777777777763 333455 66777666666666666554433
No 403
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=33.34 E-value=1.2e+02 Score=18.92 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
.+.|..++..+....- ...|...|+.++.+.|+-+-+..+
T Consensus 44 ~eq~~~mL~~W~~r~g--~~at~~~L~~AL~~i~r~Di~~~~ 83 (84)
T cd08317 44 AQQAQAMLKLWLEREG--KKATGNSLEKALKKIGRDDIVEKC 83 (84)
T ss_pred HHHHHHHHHHHHHhcC--CcchHHHHHHHHHHcChHHHHHHh
Confidence 4778888888875522 357788899999888887776653
No 404
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=33.01 E-value=1.2e+02 Score=21.02 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH--HhhCCCCCcc
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM--TESNPQMVLD 131 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~--m~~~~g~~~~ 131 (250)
.++.+-|+++++. +|+|..++-+ +.+. |+.||
T Consensus 88 ~EI~~IM~~~~v~------------------FDeARliy~~~~f~~N-gI~pd 121 (128)
T PF09435_consen 88 REIRRIMKRRRVN------------------FDEARLIYTERRFKKN-GIGPD 121 (128)
T ss_pred HHHHHHHHHcCCC------------------HHHHHHHHHHHHHHHc-CCCCC
Confidence 5556666666664 5666666543 3444 66555
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=33.00 E-value=2.6e+02 Score=22.55 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=46.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-----cCChhHHHHHH
Q 037164 183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK-----NGLLEKAQSLI 242 (250)
Q Consensus 183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~ 242 (250)
........|-.|+|.|....+.++-..+...--.-+..-|.++.+.|.. .|.+++|+++.
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3455667778899999999999999998865444455558888877766 58999998876
No 406
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.79 E-value=2e+02 Score=26.34 Aligned_cols=73 Identities=7% Similarity=-0.085 Sum_probs=46.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhc--CCCCCchhHhhhHHHHHhcCChhH--HHHHHHHHhhCCCCCccHHHHHHH
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEK--SINGDQFTLGIRPSAYAAASDIHG--MDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~--gi~p~~~ty~~li~~~~~~~~~~~--a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
+|..+|...|++-.+..+++.+..+ |-+-=...||..|+.+.+.|.++- +.+-..+..+...+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 7888899999999998888887654 333334567888888888887542 222222221111455667777766
No 407
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.52 E-value=2.1e+02 Score=21.72 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
......|++|+|..+++....+++. ......--+.+...|+-++|..-|.+.+++
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3455667777777777655433322 122223334566677777777776666554
No 408
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=32.36 E-value=2.7e+02 Score=22.55 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=42.5
Q ss_pred hhhHHHHH---HHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 184 NKGYMTMM---GLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 184 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
...-..+| ++|.-...+|....+++..+.. ..-....-|..|++....-|++.+..-+|+.+.+++
T Consensus 20 ~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n~ 89 (296)
T PF14649_consen 20 SCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIEND 89 (296)
T ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHcC
Confidence 34444555 5556666677766666654422 223346667778888888888888888877777664
No 409
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.73 E-value=1.5e+02 Score=19.48 Aligned_cols=49 Identities=4% Similarity=-0.177 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 037164 165 LKDQLYRIWKHYGQTRKVFN--KGYMTMMGLLLKLD--DVKGAEKTLRNWTSK 213 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 213 (250)
..++..++.+.+.+...|+. .....+|..+...+ .-+.+..++..+.+.
T Consensus 14 ~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~ 66 (113)
T smart00544 14 SSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQA 66 (113)
T ss_pred HcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHc
Confidence 33455555555555543311 22223333333332 233444555555433
No 410
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=31.32 E-value=1.7e+02 Score=21.50 Aligned_cols=71 Identities=10% Similarity=-0.053 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHhhhh-hccccccc-----------------hhHHHHHHHHHHH-CCCCccHHHHHHHHHHHhhcCChhh
Q 037164 19 GVEQAEIYFDNISKL-LRQCLFFG-----------------VGKAEMVVQEMKD-MGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 19 ~~~~a~~~f~~~~~~-~~~~~~y~-----------------~~~A~~~~~~m~~-~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
+-++|.-+|..+... .++. |. -..--++++.+.+ .|+.|...++.-++..+++.-.++.
T Consensus 108 ~e~~af~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~ 185 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNF--YLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEI 185 (199)
T ss_pred CHHHHHHHHHHHHHHhCccc--CCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHH
Confidence 456677777776555 2221 32 1223356666775 7888998999999999999889999
Q ss_pred HHHHHHHHHhcC
Q 037164 80 IDALMLEMEEKS 91 (250)
Q Consensus 80 a~~~~~~m~~~g 91 (250)
+.++++.+...|
T Consensus 186 ~~riwD~~l~eG 197 (199)
T smart00164 186 VLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHhcC
Confidence 999999987776
No 411
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.03 E-value=35 Score=23.52 Aligned_cols=27 Identities=4% Similarity=0.211 Sum_probs=16.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCCchhHh
Q 037164 74 TGNREKIDALMLEMEEKSINGDQFTLG 100 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~~gi~p~~~ty~ 100 (250)
.|+...|.++++.++..|+.|-...|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 566777777777777777776666653
No 412
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=31.01 E-value=1.2e+02 Score=17.96 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 188 MTMMGLLLKLDD--VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 188 ~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
..+|.......+ .+++..+++.+. .|-.++..+-..|+....+.-..++...+.+-|.+.+
T Consensus 3 ~~~l~~l~~g~~Ls~~e~~~~~~~i~-~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 3 KEILKKLRDGEDLSREEAKAAFDAIL-DGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHH-TTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 345555555544 578889998887 5555566666666666666667777777777777765
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.98 E-value=1.8e+02 Score=24.47 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=37.8
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCCch--hHhhhHHHHHhcC--ChhHHHHHHHHHhh
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGDQF--TLGIRPSAYAAAS--DIHGMDKIINMTES 124 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~--ty~~li~~~~~~~--~~~~a~~~~~~m~~ 124 (250)
...+.+++..|.++|+++..+ ++++.. .|..+..+|.... ++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345788899999999998887 666555 4555566665543 57778888876654
No 414
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.85 E-value=1.5e+02 Score=19.03 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
+++ ++|+-..-.|+.-|..+|.+++....-.--++.+.++++.|-..
T Consensus 26 eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 26 EEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 444 78888888888888888888888887777788888888887654
No 415
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.82 E-value=2.5e+02 Score=21.62 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRN 209 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~ 209 (250)
-++.++...|+.+.|..+++.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHh
Confidence 355666666666666666654
No 416
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=30.52 E-value=2.4e+02 Score=21.38 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=46.2
Q ss_pred HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhcCChhHHH
Q 037164 176 YGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK---NLPYDFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 176 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 239 (250)
++..+..+....-.-+..|--..+.++|..++.+..+. +-.+|+..+.+|...|-+.|+++.|.
T Consensus 132 ~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 132 LEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34444444444444555555567899999999887632 34788999999999999999999885
No 417
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=30.49 E-value=97 Score=21.26 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHH---hhcCChhhHHHHHHHHH
Q 037164 46 EMVVQEMKDMGFARRTIYCYIMMILN---YLTGNREKIDALMLEME 88 (250)
Q Consensus 46 ~~~~~~m~~~~~~p~~~~y~~li~~~---~~~g~~~~a~~~~~~m~ 88 (250)
..+|++.-+.|+..|...|-.++..- +..=+-+.|.++++.+.
T Consensus 63 r~~~r~A~~~glI~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 63 RDVFREAFKAGLIDDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP 108 (124)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 66777777777777777777777553 44445566777776655
No 418
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=30.28 E-value=72 Score=27.36 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=32.4
Q ss_pred ccChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHHH----HHHHHHHHhhcC
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTIY----CYIMMILNYLTG 75 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~----y~~li~~~~~~g 75 (250)
...+++|.++-++-... ..+.+-. +..|.+++.++.++|+.||.+| +...+++|+-.|
T Consensus 216 a~~ldeAl~~a~~~~~a-g~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G 278 (561)
T COG2987 216 AETLDEALALAEEATAA-GEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (561)
T ss_pred cCCHHHHHHHHHHHHhc-CCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCc
Confidence 45566666665554432 1111222 6667777777777777776543 555566665555
No 419
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=30.24 E-value=84 Score=24.25 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHCCCCccHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTI 62 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~ 62 (250)
...|+++|+.+.+.|++|+..
T Consensus 66 a~~Al~i~~lL~~~Gv~ps~v 86 (269)
T COG3294 66 ANSALAIYKLLLEKGVKPSGV 86 (269)
T ss_pred cchHHHHHHHHHhcCCCcccc
Confidence 677788888888888877754
No 420
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=30.17 E-value=72 Score=27.71 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=32.5
Q ss_pred cChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHHH----HHHHHHHHhhcC-ChhhHHHH
Q 037164 18 HGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTIY----CYIMMILNYLTG-NREKIDAL 83 (250)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~----y~~li~~~~~~g-~~~~a~~~ 83 (250)
.++++|.+..++.... ..+.+-. +-.|.++|+++.+.|+.||.+| ....+++|+-.| .++++.++
T Consensus 208 ~~ldeal~~~~~a~~~-~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~l 278 (545)
T TIGR01228 208 DSLDEALARAEEAKAE-GKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKL 278 (545)
T ss_pred CCHHHHHHHHHHHHHc-CCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHH
Confidence 4555565555555443 1122222 5566666666666666666543 334444455554 33444333
No 421
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=30.10 E-value=1.1e+02 Score=18.31 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
.+++.--.+.| +..|-++.++|++.|+.
T Consensus 22 ~S~lQR~~~IG-ynrAariid~lE~~GiV 49 (63)
T smart00843 22 TSLLQRRLRIG-YNRAARLIDQLEEEGIV 49 (63)
T ss_pred hHHHHHHHhcc-hhHHHHHHHHHHHCcCC
Confidence 45566666676 78999999999999875
No 422
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=30.10 E-value=1.3e+02 Score=18.18 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
.+.+.+++..+..... +..|...|+.++.+.|..+.|..+
T Consensus 38 ~~~~~~mL~~W~~~~~--~~at~~~L~~aL~~~~~~~~a~~~ 77 (79)
T cd01670 38 REQAYQLLLKWEEREG--DNATVGNLIEALREIGRRDDAAKL 77 (79)
T ss_pred HHHHHHHHHHHHhccC--cCcHHHHHHHHHHHcCHHHHHHHh
Confidence 5777777877764432 367788888888888876666554
No 423
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=29.83 E-value=1.6e+02 Score=18.99 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
...-.+-.-|-+.|-.++|.+.+..++.. |.. .|...|+.++-.++.-.-|+.++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 33445556777888899999999998854 443 78889999999998877777765
No 424
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.82 E-value=3.6e+02 Score=23.17 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=67.6
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccc---hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc---CC---hhhHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG---VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT---GN---REKIDAL 83 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~---g~---~~~a~~~ 83 (250)
-+.+.|.+++|...|..+....|-..+-+ .+++.++....++. +-...|..-.+. .. ..+..++
T Consensus 213 k~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEY-------ilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 213 KLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREY-------ILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34668999999999999988755444444 44554444443331 112222222221 11 1233344
Q ss_pred HHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHh
Q 037164 84 MLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEG 151 (250)
Q Consensus 84 ~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~ 151 (250)
-.-|-.-+++|. .-+...-|+.+.|.+++..|..+-+++.+. +-.|+ +.++|.+++...++
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel-~p~~~------~a~qArKil~~~e~ 348 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLEL-NPSPE------VAEQARKILQACER 348 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT---SCH------HHHHHHHHHHHHCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCHH------HHHHHHHHHHHHhc
Confidence 444444455542 234455678888899999999999988864 32222 24577888877663
No 425
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=29.81 E-value=1.4e+02 Score=18.93 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
.+.+...+..+..... .+..+...|+.++.++|+-+-|..+-
T Consensus 42 ~eq~~~mL~~W~~~~~-~~~atv~~L~~AL~~~gr~dlae~l~ 83 (86)
T cd08779 42 DEQIFDMLFSWAQRQA-GDPDAVGKLVTALEESGRQDLADEVR 83 (86)
T ss_pred HHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHcCHHHHHHHHH
Confidence 4556666666664321 23456778888888888877776654
No 426
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=29.68 E-value=32 Score=19.42 Aligned_cols=22 Identities=5% Similarity=-0.047 Sum_probs=11.1
Q ss_pred CChhHHHHHHHHHhhCCCCCcc
Q 037164 110 SDIHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 110 ~~~~~a~~~~~~m~~~~g~~~~ 131 (250)
.|++.|...|.+++....++|+
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CC
T ss_pred CCHHHHHHHHHHHHHcCCCChH
Confidence 4666666666666554334443
No 427
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=3.3e+02 Score=22.66 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhc---CCCCCchhHhh--hHHHHHhcCChhHHHHHHHHHhh-----CCCCCccH
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEK---SINGDQFTLGI--RPSAYAAASDIHGMDKIINMTES-----NPQMVLDF 132 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~---gi~p~~~ty~~--li~~~~~~~~~~~a~~~~~~m~~-----~~g~~~~~ 132 (250)
..-.++...-+.+|.++|+++++++.+. -=.|+.+.|.. ...++...||.+++.+++++.+. . +++|+.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~-~v~~~V 155 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD-GVTSNV 155 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc-CCChhh
Confidence 3445556666777899999999998764 22466776644 45777788999999999988876 4 777744
Q ss_pred -HHHHHH
Q 037164 133 -NLLAVL 138 (250)
Q Consensus 133 -~~~~~l 138 (250)
..|..+
T Consensus 156 h~~fY~l 162 (380)
T KOG2908|consen 156 HSSFYSL 162 (380)
T ss_pred hhhHHHH
Confidence 334444
No 428
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=29.35 E-value=69 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=23.0
Q ss_pred cCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 109 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
.|+...|.++++.++.. |.+|-...|...
T Consensus 10 ~G~~~ra~riL~~L~~E-g~ep~~lLw~L~ 38 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAE-GVEPPILLWALQ 38 (125)
T ss_dssp TT-HHHHHHHHHHHHHT-T--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CccHHHHHHHHH
Confidence 68999999999999999 999998877655
No 429
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=29.27 E-value=82 Score=27.04 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchh----HhhhHHHHHhcCC-hhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFT----LGIRPSAYAAASD-IHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~t----y~~li~~~~~~~~-~~~a~ 116 (250)
+++|+++-++-...|-+-+ .|-.-.|-+++.++.++|+.||..| ..-.+++|+-.|- ++++.
T Consensus 219 ldeAl~~a~~~~~ag~p~S-------------Igl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~ 285 (561)
T COG2987 219 LDEALALAEEATAAGEPIS-------------IGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEAD 285 (561)
T ss_pred HHHHHHHHHHHHhcCCceE-------------EEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHH
Confidence 7888888888877764332 3455678899999999999999876 3456777877763 55555
Q ss_pred HH
Q 037164 117 KI 118 (250)
Q Consensus 117 ~~ 118 (250)
++
T Consensus 286 ~l 287 (561)
T COG2987 286 EL 287 (561)
T ss_pred HH
Confidence 44
No 430
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=29.25 E-value=3.4e+02 Score=22.60 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
-++.|+++.+.+++.|..+|..+|-=..+-+... +..|..+.+.+
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~FR~LItq--IGNA~gyVRmi 325 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQFRQLITQ--IGNAMGYVRMI 325 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHH--HhHHHHHHHHH
Confidence 3799999999999999999998887666655442 44555555443
No 431
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.20 E-value=2.5e+02 Score=21.21 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG-LPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..-+.+++.+.-.|+++.|.+.|.-+.... ..|+. .|..=+.-+.+.+.-....++++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 445688899999999999999999988542 33333 36666666666666555556666553
No 432
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=28.93 E-value=59 Score=26.75 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 184 NKGYMTMMGLLLKLD----DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 184 ~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
..++..|++.|.+.| ++.+|.+++++|.......+..+|-++-.+..-+|. ..++..|.++|
T Consensus 28 ~~~~~~l~~~~~~~gF~A~~l~~A~~i~~~M~~~~~~~~~~ifL~~tg~misaGl----r~~i~~Li~~~ 93 (334)
T PRK03971 28 DIDLEEVLDYYAKIGFQATHLGKAIKIWKKIEEKRKKEEATVFLGYTSNIVSSGL----REIIAYLVKEK 93 (334)
T ss_pred CCCHHHHHHHHHHcCccHHHHHHHHHHHHHHHhhcccCCCeEEEEccccccchhH----HHHHHHHHHcC
Confidence 357888998888854 789999999999852222344444444444443333 34455555444
No 433
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=28.90 E-value=1.3e+02 Score=17.99 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
.++|.-..+.| +..|-+++++|++.|+.
T Consensus 23 ~S~lQR~~rIG-ynrAariid~LE~~GiV 50 (65)
T PF09397_consen 23 ISLLQRKFRIG-YNRAARIIDQLEEEGIV 50 (65)
T ss_dssp HHHHHHHHT---HHHHHHHHHHHHHCTSB
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCC
Confidence 45566666666 78899999999999875
No 434
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.88 E-value=1.5e+02 Score=22.73 Aligned_cols=82 Identities=4% Similarity=0.044 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHCCC-------CccHHHHHHHHHHHhhcCC---------hhhHHHHHHHHHhcCCCC-CchhHhhhHH
Q 037164 42 VGKAEMVVQEMKDMGF-------ARRTIYCYIMMILNYLTGN---------REKIDALMLEMEEKSING-DQFTLGIRPS 104 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~-------~p~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~gi~p-~~~ty~~li~ 104 (250)
++.|..++..|--..+ .....=|-.+-.+|++.|- .+...++++...+.|++- =++.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 7888888888854422 1234668899999999884 466778888888888763 4578999998
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 037164 105 AYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 105 ~~~~~~~~~~a~~~~~~m~ 123 (250)
.-.-.-+.+.+.+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7777778889998888765
No 435
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=28.42 E-value=3.9e+02 Score=23.08 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=37.0
Q ss_pred HhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHhcCChhHHHHHH
Q 037164 71 NYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~~~~~~~a~~~~ 119 (250)
+|+.|+......+|+...+.|-. |.. +|+-|-++|.-.+|+++|.+..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 68899999999999988887754 443 4556667777788899888764
No 436
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=27.87 E-value=3.3e+02 Score=22.02 Aligned_cols=30 Identities=10% Similarity=-0.249 Sum_probs=16.4
Q ss_pred CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 95 DQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 95 ~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
...+|..+.+.+.+.|.++.|...+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 334555555555555555555555555543
No 437
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=27.47 E-value=1.6e+02 Score=18.27 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHH
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQS 240 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 240 (250)
-+.+.+++..+..+.-. ..|...|+.++-+.|.-.-|+.
T Consensus 39 ~eq~~~mL~~W~~k~G~--~At~~~L~~aL~~~~~~~~Ae~ 77 (79)
T cd08784 39 RDRVYELLRIWRNKEGR--KATLNTLIKALKDLDQRRTAEK 77 (79)
T ss_pred HHHHHHHHHHHHhccCc--CcHHHHHHHHHHHcccHhHHHH
Confidence 46677777777754222 4577888888888777666654
No 438
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=27.42 E-value=1.1e+02 Score=19.42 Aligned_cols=30 Identities=3% Similarity=-0.021 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLE 86 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 86 (250)
+.|+...||.+++.-.+.+...-|..++.+
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r 41 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMR 41 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 578888888888877777776666555553
No 439
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=27.41 E-value=3e+02 Score=21.46 Aligned_cols=167 Identities=11% Similarity=-0.069 Sum_probs=86.1
Q ss_pred HhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----------
Q 037164 71 NYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----------- 138 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------- 138 (250)
|-..|.+..|.-=|.+ .-.+.|+. ..||-|---+...|+++.|.+.|+...+- .|. +-|..+
T Consensus 75 YDSlGL~~LAR~DftQ--aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~-y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 75 YDSLGLRALARNDFSQ--ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPT-YNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhHHHHHhhhhhh--hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCc-chHHHhccceeeeecCc
Confidence 4555666666655553 33466765 56777878889999999999999987642 232 334444
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
..-|.+-+...-.....+..++ .|- ++.+... ++.++....|..-|...|-.|-- |++. .+.+++...
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~-LWLYl~E~k~dP~~A~t--nL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRS-LWLYLNEQKLDPKQAKT--NLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHH-HHHHHHHhhCCHHHHHH--HHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 3434433333322221111111 221 2222211 11122222333334333322211 1111 122333333
Q ss_pred hCCCCCC-------CcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 212 SKNLPYD-------FGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 212 ~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
. +-..+ +.||--|-.-|...|+.++|..+|+-.+.+.
T Consensus 224 a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 A-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred h-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 11111 3566677888889999999999999877654
No 440
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.37 E-value=5.5e+02 Score=24.46 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHCCCCccH-------HHHHHHHHHH-hhcCChhhHHHHHHHHHhc----CCCCCchhHhhhHHHHHhc
Q 037164 42 VGKAEMVVQEMKDMGFARRT-------IYCYIMMILN-YLTGNREKIDALMLEMEEK----SINGDQFTLGIRPSAYAAA 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~-------~~y~~li~~~-~~~g~~~~a~~~~~~m~~~----gi~p~~~ty~~li~~~~~~ 109 (250)
+.+|..+..+....--.|+. ..|+.|-... ...|+++++.++.++-.+. -..+....+..+..+..-.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Confidence 78888888887654222222 3455555443 4578889998888876543 2334566777778888888
Q ss_pred CChhHHHHHHHHHhhC
Q 037164 110 SDIHGMDKIINMTESN 125 (250)
Q Consensus 110 ~~~~~a~~~~~~m~~~ 125 (250)
|++++|..+.++..+.
T Consensus 511 G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 511 GELTQALALMQQAEQM 526 (894)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999998887766543
No 441
>PRK05414 urocanate hydratase; Provisional
Probab=27.32 E-value=91 Score=27.24 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=27.4
Q ss_pred cChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHHH----HHHHHHHHhhcC
Q 037164 18 HGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTIY----CYIMMILNYLTG 75 (250)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~----y~~li~~~~~~g 75 (250)
.++++|.+..++..+. ..+.+-. +..|.++|+++.+.|+.||..| ....+++|+-.|
T Consensus 217 ~~Ldeal~~~~~a~~~-~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G 278 (556)
T PRK05414 217 DDLDEALALAEEAKAA-GEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (556)
T ss_pred CCHHHHHHHHHHHHHc-CCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCC
Confidence 4455555555544443 1122222 5555666666666666665533 333333555444
No 442
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.31 E-value=2.5e+02 Score=29.80 Aligned_cols=112 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc---hhHHHHHHHH----HHHCCCCccHHHHHHHHHHHhhcCChhhHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG---VGKAEMVVQE----MKDMGFARRTIYCYIMMILNYLTGNREKID 81 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---~~~A~~~~~~----m~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 81 (250)
..++.-.+-.+++...++++.+|+......+|+ ..+|.-.|++ .++. .-...-|..+...|+..+++|++.
T Consensus 1363 ~~~~~Tt~~~~~~~v~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~ 1440 (2382)
T KOG0890|consen 1363 SIMSWTTTGEDIEGVQSFLDLIPSDTLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVE 1440 (2382)
T ss_pred eeeccccCCCchhhhHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhh
Q ss_pred HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc
Q 037164 82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~ 131 (250)
.+... ... ......-|--....|++..|..+|+++. +..|+
T Consensus 1441 Gv~~~-r~a-----~~sl~~qil~~e~~g~~~da~~Cye~~~---q~~p~ 1481 (2382)
T KOG0890|consen 1441 GVSAR-RFA-----DPSLYQQILEHEASGNWADAAACYERLI---QKDPD 1481 (2382)
T ss_pred hHHHH-hhc-----CccHHHHHHHHHhhccHHHHHHHHHHhh---cCCCc
No 443
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.24 E-value=1.9e+02 Score=19.01 Aligned_cols=62 Identities=6% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC--ChhHHHHHHHHHhhCCCCC
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS--DIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~ 129 (250)
..++.-|...|+.++|...+.++...... ......+|......+ .-+.+..++..+... +..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~--~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~-~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQH--HEVVKVILECALEEKKSYREYYSKLLSHLCKR-KLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGH--HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT-TSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccH--HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCC
Confidence 45566777778999999988876433221 223334444444442 344567777777766 553
No 444
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.97 E-value=3.3e+02 Score=21.80 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHCCC----CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGF----ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~----~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
.+.|.+.|++....+. ..+...-..++....+.|+.+.-..+++..+.. ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4777888888877422 334556666777777888877766666666654 366777888999999999998899
Q ss_pred HHHHHhhCCCCCcc
Q 037164 118 IINMTESNPQMVLD 131 (250)
Q Consensus 118 ~~~~m~~~~g~~~~ 131 (250)
+++.......+++.
T Consensus 223 ~l~~~l~~~~v~~~ 236 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ 236 (324)
T ss_dssp HHHHHHCTSTS-TT
T ss_pred HHHHHcCCcccccH
Confidence 99888765125544
No 445
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=26.91 E-value=1.1e+02 Score=19.17 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGD 95 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~ 95 (250)
....++..+.+ ++++++...+.++...|+.++
T Consensus 7 ~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~ 38 (89)
T PF08542_consen 7 VIEEILESCLN-GDFKEARKKLYELLVEGYSAS 38 (89)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH
Confidence 33344444433 477777777777777766543
No 446
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.86 E-value=4.5e+02 Score=23.27 Aligned_cols=80 Identities=6% Similarity=0.058 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
+.+-..+|+..... +.-|+..|..-|.-+-+.+.+.++.++|.+|.. ++-.||...|.+.= -|-...+++.|..+|.
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHH
Confidence 56666677776654 556888888888877777778888899988765 56667776665432 2222333888888877
Q ss_pred HHh
Q 037164 121 MTE 123 (250)
Q Consensus 121 ~m~ 123 (250)
.-.
T Consensus 165 rgL 167 (568)
T KOG2396|consen 165 RGL 167 (568)
T ss_pred HHh
Confidence 654
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.78 E-value=2e+02 Score=24.47 Aligned_cols=61 Identities=13% Similarity=-0.054 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-----CCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSK--N-----LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+...|++..+-.||+..|.++++.+.-. + ..-.+.++--+--+|.-.+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667888889999999998876421 1 11245667777778888899999999888764
No 448
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.66 E-value=1.8e+02 Score=25.45 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
.-+++..|++.|+.+...++.-++..+.+.-..+.|.++++.+-.. |...-...+
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~e-g~~~l~~~~ 415 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLE-GSSMLFQLA 415 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 4567788899999999999999999999999999999999998776 665444443
No 449
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=26.63 E-value=2.7e+02 Score=20.75 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
.++|.+.|++..+. .|+...|+.-+.... +|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 67777777777664 699999999888763 567777777777554
No 450
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=26.59 E-value=2.2e+02 Score=19.58 Aligned_cols=67 Identities=4% Similarity=-0.226 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
...|..+++.+...|..|+ .-...+....+.+....+.-..-....|+.++..+.+.||...+.-+-
T Consensus 47 ~~HA~~~~~~l~~l~g~~~-----------~~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~ 113 (134)
T cd01041 47 KEHAKGHFKLLKGLGGGDT-----------GPPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE 113 (134)
T ss_pred HHHHHHHHHHHhcCCCCCc-----------CCCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5678888888888887776 223345566666766655422224478888998888888876654443
No 451
>PF14786 Death_2: Tube Death domain; PDB: 1D2Z_B.
Probab=25.95 E-value=2.4e+02 Score=19.80 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=45.3
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 185 KGYMTMMGLLL-KLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 185 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
...-.+|+-.+ +..+-..++-+++++..+|-...-.|...|+..+.++..+..|.-+--++
T Consensus 56 ~~hi~~Ie~~a~r~~~~s~s~illdEWgTSGr~~eRPTl~~Ll~LLvkael~rAADyva~~~ 117 (137)
T PF14786_consen 56 SQHISLIEEAAERLQNRSCSEILLDEWGTSGRKNERPTLGHLLQLLVKAELFRAADYVAVDI 117 (137)
T ss_dssp HHHHHHHHHHHHHSTTS-HHHHHHHHHHT-SSTTTS-BHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccCCcHHHHHHHHhhccCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888 46778889999999998887666678889999999999998887776443
No 452
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=25.64 E-value=3.5e+02 Score=23.31 Aligned_cols=81 Identities=10% Similarity=-0.085 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHH----CCCC-ccHHHHHHHHHHHhhcCChhhHHHHHHHHH----hcCCC-CCchhHhhhHHHHHhcCC
Q 037164 42 VGKAEMVVQEMKD----MGFA-RRTIYCYIMMILNYLTGNREKIDALMLEME----EKSIN-GDQFTLGIRPSAYAAASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~----~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~----~~gi~-p~~~ty~~li~~~~~~~~ 111 (250)
++.|.++|.+=++ .|-. .--..|..|-+-|.-.|+++.|....++=. +-|=. ..-..++.|-+++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 6667777655322 2211 122567788888888999999887776522 22221 234578888899999999
Q ss_pred hhHHHHHHHHH
Q 037164 112 IHGMDKIINMT 122 (250)
Q Consensus 112 ~~~a~~~~~~m 122 (250)
++.|.+-|+.-
T Consensus 251 fe~A~ehYK~t 261 (639)
T KOG1130|consen 251 FELAIEHYKLT 261 (639)
T ss_pred cHhHHHHHHHH
Confidence 99998888764
No 453
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=25.31 E-value=1.6e+02 Score=17.68 Aligned_cols=34 Identities=21% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHH
Q 037164 202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 239 (250)
.|.+++..+.+.| ..++..+..++.+.|..+-|.
T Consensus 34 ~a~~ll~~l~~~~----~~a~~~~~~vL~~~~~~~la~ 67 (69)
T cd08304 34 AANELLNILESQY----NHTLQLLFALFEDLGLHNLAR 67 (69)
T ss_pred HHHHHHHHHHHhC----cchHHHHHHHHHHcCCHhHHh
Confidence 6778888887666 567777888888877766554
No 454
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.23 E-value=1.2e+02 Score=19.93 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=8.2
Q ss_pred CChhhHHHHHHHHHhcCC
Q 037164 75 GNREKIDALMLEMEEKSI 92 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi 92 (250)
.++..+..+|..+++.|.
T Consensus 38 e~i~s~~~Lf~~Lee~gl 55 (97)
T cd08790 38 GLIRSGRDFLLALERQGR 55 (97)
T ss_pred cCcCcHHHHHHHHHHcCC
Confidence 334444444444444444
No 455
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=25.19 E-value=77 Score=17.33 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCCchhH
Q 037164 81 DALMLEMEEKSINGDQFTL 99 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty 99 (250)
.++..++.+.|+.|.++|-
T Consensus 9 ~eL~~~L~~~G~~~gPIt~ 27 (44)
T smart00540 9 AELRAELKQYGLPPGPITD 27 (44)
T ss_pred HHHHHHHHHcCCCCCCcCc
Confidence 3566677777777776654
No 456
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=24.98 E-value=4.9e+02 Score=23.06 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--------HHHHHHHHHHHH
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--------LYMAMTMLKKSE 150 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--------~~~a~~~~~~~~ 150 (250)
+...+++....+ +.-|+..|...|.-+-+.+.+.++.++|.+|...-+..||.=++.+. ++.|..+|.+-.
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 445555554433 55699999999999999999999999999996543777777666666 455555554443
No 457
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.86 E-value=3.6e+02 Score=21.47 Aligned_cols=58 Identities=12% Similarity=-0.000 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC-CCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTS---K-NLPY-DFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
|..+-..+.+..++.+|-..+.+-.. . .--+ -...+-+.|-.|....++..|.+.+++
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 44444566666677665555544211 0 1111 123466677778888888888888765
No 458
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=24.65 E-value=4.2e+02 Score=22.25 Aligned_cols=190 Identities=8% Similarity=-0.007 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhh-HHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR-PSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~l-i~~~~~~~~~~~a~~~~~ 120 (250)
+..|+.-|....+-+ +.+-.++----..|...|+..-|+.=+....+ ++||-..-.+- -..+.+.|.+++|..=|+
T Consensus 54 ~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFD 130 (504)
T ss_pred HHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence 667777777766532 22222333334567777777777776665554 45664333222 255678999999999999
Q ss_pred HHhhC-C--CCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 037164 121 MTESN-P--QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL 197 (250)
Q Consensus 121 ~m~~~-~--g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 197 (250)
..... + |...+...-..++++-..+...+....... ....+......+-+..+.+...|..--.+|...
T Consensus 131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc
Confidence 88754 1 111122222112333333222222111000 223333333333444445556666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
|++..|+.=++..... ..-++.++--+-..+-..|+.+.+....+
T Consensus 203 ~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred CcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666665555443321 11223333344444445555544444433
No 459
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=24.56 E-value=2.9e+02 Score=21.05 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=13.0
Q ss_pred HhhhccChhHHHHHHHHhhhh
Q 037164 13 LIFEVHGVEQAEIYFDNISKL 33 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~ 33 (250)
.+.+.-+++-+++-++.+...
T Consensus 38 ILtQNT~WknvekAlenLk~~ 58 (215)
T COG2231 38 ILTQNTSWKNVEKALENLKNE 58 (215)
T ss_pred HHhccccHHHHHHHHHHHHHc
Confidence 345556666666666666655
No 460
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.52 E-value=2.3e+02 Score=19.15 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
--+-+.++.+.|++++| +... .....||..-|-+| +-.+.|.-+++...+.++..+|
T Consensus 43 ~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 43 ALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAAL--CAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 33445677788888888 2211 12345666666444 4456777777777777776655
No 461
>PF01916 DS: Deoxyhypusine synthase; InterPro: IPR002773 Eukaryotic initiation factor 5A (eIF-5A), now considered to be an elongation factor (see IPR001884 from INTERPRO), contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) 2.5.1.46 from EC. The enzyme catalyses the following reaction: Spermidine + [eIF-5A]-lysine = 1,3-diaminopropane + [eIF-5A]-deoxyhypusine The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation []. The structure is known for this enzyme [] in complex with its NAD+ cofactor.; GO: 0008612 peptidyl-lysine modification to hypusine; PDB: 1RQD_A 1RLZ_A 1DHS_A 1ROZ_B.
Probab=24.46 E-value=34 Score=27.62 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHhcC----CHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 190 MMGLLLKLD----DVKGAEKTLRNWTSKN-LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 190 li~~~~~~g----~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
|+++|.+.| ++.+|.+++++|.+.+ ..++...+-++-.+..-+|. ..++..|+++|
T Consensus 4 Li~~~~~~gF~a~~l~~A~~i~~~M~~~~~~~~~~tifLt~aGamvsaGL----r~ii~~LIr~g 64 (299)
T PF01916_consen 4 LIESMSKTGFQARNLGEAAEILKEMLSDDRSKQDCTIFLTFAGAMVSAGL----RGIIADLIRNG 64 (299)
T ss_dssp HHHGGGGT-HHHHHHHHHHHHHHHHHHHHS---SSEEEEEE-THHHHSTH----HHHHHHHHHTT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHhhcccccCCeEEEEcccccccccH----HHHHHHHHhCC
Confidence 444454443 6789999999999764 55666777666666666665 34566666654
No 462
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=24.25 E-value=15 Score=23.09 Aligned_cols=22 Identities=5% Similarity=-0.040 Sum_probs=9.7
Q ss_pred CCCccHHHHHHHHHHHhhcCCh
Q 037164 56 GFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 56 ~~~p~~~~y~~li~~~~~~g~~ 77 (250)
.+..+..+|.+.|++|++.|..
T Consensus 19 eLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 19 ELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp TTTTTTTB------TTSS--EE
T ss_pred HhhcccceeeeeecccccceEE
Confidence 3556778899999999988853
No 463
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.75 E-value=3e+02 Score=20.15 Aligned_cols=81 Identities=5% Similarity=-0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHHHHH
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVLLYM 141 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l~~~ 141 (250)
.+.-++..-.+......+..++++.+- .+..-.-|.-+.+.|+++.+..-|...+...+-.. ....+..+..+
T Consensus 59 ~~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~e 132 (182)
T PF15469_consen 59 VFKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSE 132 (182)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444444555555555554432 33334567788889999999999988765412211 44555555444
Q ss_pred HHHHHHHH
Q 037164 142 AMTMLKKS 149 (250)
Q Consensus 142 a~~~~~~~ 149 (250)
+..+..+.
T Consensus 133 ve~ii~~~ 140 (182)
T PF15469_consen 133 VEKIIEEF 140 (182)
T ss_pred HHHHHHHH
Confidence 44444433
No 464
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=23.48 E-value=89 Score=27.29 Aligned_cols=19 Identities=5% Similarity=-0.156 Sum_probs=9.3
Q ss_pred chhHHHHHHHHHhccCCCC
Q 037164 165 LKDQLYRIWKHYGQTRKVF 183 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (250)
++.++.+.=+...+.++.+
T Consensus 359 dpeDi~~TD~~~~e~~~~~ 377 (546)
T PF01175_consen 359 DPEDIYKTDEAALELFPDN 377 (546)
T ss_dssp -HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHhChhh
Confidence 5555555555555554433
No 465
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=23.48 E-value=91 Score=20.54 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHCCC
Q 037164 42 VGKAEMVVQEMKDMGF 57 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~ 57 (250)
+++|..+++.+.+.|+
T Consensus 49 veeAE~~v~~~~esGi 64 (99)
T PF08564_consen 49 VEEAEYHVERCIESGI 64 (99)
T ss_dssp SSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCc
Confidence 5788888888888774
No 466
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=23.41 E-value=2.3e+02 Score=19.63 Aligned_cols=59 Identities=19% Similarity=0.086 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcch-HHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLP-SSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.+-.++..++.-.|..++|.++++... +-++.... .-+++.|.++.+-++..++=++.+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 455678888899999999999998754 33332223 358999999988887777665543
No 467
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=23.35 E-value=1.5e+02 Score=24.50 Aligned_cols=27 Identities=7% Similarity=-0.184 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 111 DIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 111 ~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
-++.|+++.+.+++- |+.+|..||-..
T Consensus 281 p~erAekf~k~irkL-G~~~dG~sylD~ 307 (350)
T PF14744_consen 281 PYERAEKFNKGIRKL-GLSDDGQSYLDQ 307 (350)
T ss_pred CHHHHHHHHHHHHHc-CCCCCcchHHHH
Confidence 467888888888888 888888888443
No 468
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=23.20 E-value=1.2e+02 Score=15.26 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=5.9
Q ss_pred HHHHHHCCCCcc
Q 037164 49 VQEMKDMGFARR 60 (250)
Q Consensus 49 ~~~m~~~~~~p~ 60 (250)
++++.+.|+..+
T Consensus 5 v~~L~~mGf~~~ 16 (37)
T smart00165 5 IDQLLEMGFSRE 16 (37)
T ss_pred HHHHHHcCCCHH
Confidence 445555555443
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.15 E-value=4.5e+02 Score=21.95 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHC 230 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 230 (250)
...|-++.......|.++.++.+|++....|-.|=...-.++++.+-
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35688888999999999999999999999999996666666666654
No 470
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.95 E-value=4.4e+02 Score=25.55 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=38.4
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH
Q 037164 73 LTGNREKIDALMLEMEEKSINGDQF-TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN 133 (250)
Q Consensus 73 ~~g~~~~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~ 133 (250)
....+.+++.+|..|.+.|+-+... .|-..-..+.+.+.+.+|..+|+.-.+. ...|-..
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~-~aeP~~r 150 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQN-KAEPLER 150 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCHHH
Confidence 4556677777777777777766553 3444446666667777777777766555 4555433
No 471
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.86 E-value=5.4e+02 Score=22.79 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 165 LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
..|..+.++..+..... .+..+-.+++....+.|+.+.|..+-+.|....+. |..+...-...--..|.++++...
T Consensus 335 ~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHH
Confidence 34444444444433222 44566778888888999999999888888765543 222222222222334667777777
Q ss_pred HHHHH
Q 037164 242 INHAE 246 (250)
Q Consensus 242 ~~~m~ 246 (250)
|++..
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 77654
No 472
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=22.79 E-value=1.3e+02 Score=21.78 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 84 ~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
|+.+....+...+...-.-|....+.++++.|.++...+.-
T Consensus 78 fd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t 118 (157)
T PF07304_consen 78 FDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMT 118 (157)
T ss_dssp HHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333334444444444445666677888888888877654
No 473
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.61 E-value=3.9e+02 Score=21.07 Aligned_cols=104 Identities=9% Similarity=-0.030 Sum_probs=58.0
Q ss_pred hccChhHHHHHHHHhhhhhccccccc--hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh-hHHHHHHHHHhc--
Q 037164 16 EVHGVEQAEIYFDNISKLLRQCLFFG--VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE-KIDALMLEMEEK-- 90 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~~~~~~~~y~--~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~-~a~~~~~~m~~~-- 90 (250)
+.+++++|.+++-+-....-....++ .+.|.-+.+-..+.+.+.|...-..++..+...+.-+ +-.++.+.+.+.
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~ 81 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSK 81 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHc
Confidence 45778888887765444422222233 7778777877877888888777777777776665433 344555554432
Q ss_pred -CCC--CCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 91 -SIN--GDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 91 -gi~--p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
|-. -|+..-..+-..|.+.+++..|+.-|
T Consensus 82 ~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 82 FGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 212 23444555668888888887776543
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.58 E-value=4.9e+02 Score=22.25 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhc--C----CC-CCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEEK--S----IN-GDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~~--g----i~-p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
.-.|+..++-.||+..|+++++.+.-. + +. -.+.+|--+--+|.-.+++..|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999999875321 2 11 133455556677778899999999998764
No 475
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=22.29 E-value=3.5e+02 Score=23.88 Aligned_cols=153 Identities=5% Similarity=-0.070 Sum_probs=90.6
Q ss_pred HHHHHHHHCCCCccHHH---HHHHHHHHhhcCChhhHHHHHHHHHhcCC---CCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 47 MVVQEMKDMGFARRTIY---CYIMMILNYLTGNREKIDALMLEMEEKSI---NGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 47 ~~~~~m~~~~~~p~~~~---y~~li~~~~~~g~~~~a~~~~~~m~~~gi---~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
-+.+.+.+.++-|++.+ -.+++.+.......++-..+|.......+ ..|..-+...++-|...|.......+..
T Consensus 191 GVlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~ 270 (543)
T KOG2214|consen 191 GVLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLAC 270 (543)
T ss_pred HHHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHH
Confidence 34456677788888754 57778887788888999888887654433 4555567778899999999988888888
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 037164 121 MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDV 200 (250)
Q Consensus 121 ~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 200 (250)
.|+..-| ..|| .+.+++..+-..... .+.+..+-=+++.-...|++..|.++..+|+--|=+
T Consensus 271 ~~~~~~~----~lTF-------qEAY~rTGrIlNItV-------~p~s~~e~P~lLNylTaPnVLIWSAV~aScs~pgif 332 (543)
T KOG2214|consen 271 VMKKRLG----NLTF-------QEAYDRTGRILNIVV-------PPSSKSEPPRLLNYLTAPNVLIWSAVCASCSVPGIF 332 (543)
T ss_pred HHHHHhc----chhH-------HHHHHhhCceEEEEE-------CccccCCChhHhhccCCCceehhHHHHHhccccccc
Confidence 8766412 3444 222222221110000 111111111223333448889999999888877755
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 037164 201 KGAEKTLRNWTSKNLPYD 218 (250)
Q Consensus 201 ~~A~~~~~~m~~~~~~~~ 218 (250)
+. ..++.+-....+.|-
T Consensus 333 ~~-~~Ll~Kd~t~ei~p~ 349 (543)
T KOG2214|consen 333 ES-TPLLAKDLTNEIEPF 349 (543)
T ss_pred Cc-cHHHHhhccCcEeec
Confidence 44 334444443344443
No 476
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=22.14 E-value=1.4e+02 Score=26.01 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchh----HhhhHHHHHhcC-ChhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFT----LGIRPSAYAAAS-DIHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~t----y~~li~~~~~~~-~~~~a~ 116 (250)
+++|++..++.++.+-+.+ .|-.-.|..++.++.++|+.||..| ....+.+|+-.| .++++.
T Consensus 210 ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~ 276 (545)
T TIGR01228 210 LDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDAD 276 (545)
T ss_pred HHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHH
Confidence 7888888888777653322 3455678899999999999998876 334566788777 566666
Q ss_pred HHH
Q 037164 117 KII 119 (250)
Q Consensus 117 ~~~ 119 (250)
++.
T Consensus 277 ~lr 279 (545)
T TIGR01228 277 KLR 279 (545)
T ss_pred HHH
Confidence 553
No 477
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.99 E-value=3.9e+02 Score=23.37 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=20.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC
Q 037164 73 LTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS 110 (250)
Q Consensus 73 ~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~ 110 (250)
+.++++.|..++..|...|..|....=..+..++-..|
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 34566666666666666666555544443334333333
No 478
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=21.98 E-value=8e+02 Score=24.45 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
.|++-+...++.-+|-++..+..
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh
Confidence 44555555555555555555443
No 479
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=4.5e+02 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRN 209 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~ 209 (250)
-+|..+.+.|++.+|..+++-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 455566666666666655544
No 480
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=21.76 E-value=2.5e+02 Score=18.48 Aligned_cols=57 Identities=11% Similarity=-0.075 Sum_probs=43.9
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh---HHHHHHHHHhhC
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH---GMDKIINMTESN 125 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~---~a~~~~~~m~~~ 125 (250)
..+....|++...+.....+...+-|..+|=+.+++-+....... +|..+=..+...
T Consensus 4 ~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~e 63 (99)
T cd04445 4 ALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNE 63 (99)
T ss_pred HHHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHc
Confidence 445666788888888888888889999999999998888776554 677666666665
No 481
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=21.58 E-value=1.1e+02 Score=25.32 Aligned_cols=58 Identities=9% Similarity=0.061 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 185 KGYMTMMGLLLKL----DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 185 ~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.++..|++.|.+. +++.+|.+++++|.+. ++..++-++-.+..-+|. ..++..|.++|
T Consensus 24 ~~v~~Lv~~~~~~gF~A~~L~~A~~i~~~Ml~~---~~~~ifL~~tgamvsaGl----r~~i~~Li~~~ 85 (347)
T PRK02492 24 FDAVPIIDAMGKMAFQSRDLARAADIYDMMLQD---KECAVILTLAGSLSSAGC----MQVYIDLVRNN 85 (347)
T ss_pred CCHHHHHHHHHHhCccHHHHHHHHHHHHHHHhC---CCCeEEEEeccchHHHHH----HHHHHHHHHcC
Confidence 4888899888885 4789999999999742 445555555555555444 34555555554
No 482
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=21.45 E-value=3e+02 Score=19.27 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 216 (250)
..+..++-.+.-.|+++.|.++.+....+|.+
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 45666777788888899999988888877753
No 483
>PRK05414 urocanate hydratase; Provisional
Probab=21.42 E-value=1.5e+02 Score=26.06 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhH----hhhHHHHHhcC-ChhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTL----GIRPSAYAAAS-DIHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty----~~li~~~~~~~-~~~~a~ 116 (250)
+++|++..++.++.+-+-+ .|-.-.|.+++.++.++|+.||..|= ...+.+|+-.| .++++.
T Consensus 219 Ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~ 285 (556)
T PRK05414 219 LDEALALAEEAKAAGEPLS-------------IGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAA 285 (556)
T ss_pred HHHHHHHHHHHHHcCCceE-------------EEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHH
Confidence 7888888888877763322 44556788999999999999998763 33455888777 566666
Q ss_pred HHH
Q 037164 117 KII 119 (250)
Q Consensus 117 ~~~ 119 (250)
++.
T Consensus 286 ~lr 288 (556)
T PRK05414 286 ELR 288 (556)
T ss_pred HHH
Confidence 553
No 484
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=21.42 E-value=2.9e+02 Score=19.12 Aligned_cols=106 Identities=7% Similarity=0.002 Sum_probs=57.9
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHH----H-------hhcCChhh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMIL----N-------YLTGNREK 79 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~----~-------~~~g~~~~ 79 (250)
...+.+....++..++|+.+....++. .+.++.+++....-.|... .+..|.- | ...+...-
T Consensus 9 ~~~l~~l~~s~~~~~yld~lv~~~~sl------~s~EvVn~L~~~~~~p~ef-l~~yI~~cI~~ce~~kd~~~q~R~VRl 81 (126)
T PF10155_consen 9 IEILVKLINSPNFKEYLDVLVSMDMSL------HSMEVVNRLTTSFSLPQEF-LHMYISNCIKSCESIKDKYMQNRLVRL 81 (126)
T ss_pred HHHHHHHcCCchHHHHHHHHHcCCCch------hHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHhhcccccccchhhh
Confidence 334444444445566666655443332 3445666665544334322 2222222 2 12223334
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
+=.+++.+.+.|+.-....+.-+=.-|.+-.++.+|..+|+-++
T Consensus 82 vcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 82 VCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 44555666777777555666666677777788999999998765
No 485
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=21.41 E-value=2.1e+02 Score=20.34 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=20.5
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 037164 47 MVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEME 88 (250)
Q Consensus 47 ~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 88 (250)
-+|..++...+++|...--.-|--+++.+++.+|.+.+-+|.
T Consensus 45 PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~Ls 86 (144)
T PF02840_consen 45 PLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLS 86 (144)
T ss_dssp HHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555555555554444444444555555555555555543
No 486
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=21.28 E-value=2.5e+02 Score=18.38 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=11.5
Q ss_pred chHHHHHHHHhcCChhHHHHHHHH
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
+++.|+.++.++|.-.-|..+-+.
T Consensus 68 ~~~~Li~aLr~~~l~~~Ad~I~~~ 91 (97)
T cd08316 68 AYRTLIKTLRKAKLCTKADKIQDI 91 (97)
T ss_pred hHHHHHHHHHHccchhHHHHHHHH
Confidence 345555555555544444444333
No 487
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=21.20 E-value=5.2e+02 Score=21.97 Aligned_cols=128 Identities=13% Similarity=-0.060 Sum_probs=0.0
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhc-----CCCCCchhHhhhHHHHHhcCChhHHHHHHHHH---hhCCCCCccHHHHHH
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEK-----SINGDQFTLGIRPSAYAAASDIHGMDKIINMT---ESNPQMVLDFNLLAV 137 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~-----gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m---~~~~g~~~~~~~~~~ 137 (250)
++-.++.-.+.++++++.|+.-.+. +--....+|-.|-+.|.+..|+++|.-+.... .+..++.-=...|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Q ss_pred H--------------HHHHHHHHHHHHhhhhccCCchhhhc-----------chhHHHHHHHHHhccCCCChhhHHHHHH
Q 037164 138 L--------------LYMAMTMLKKSEGLIATKRNSSNAFE-----------LKDQLYRIWKHYGQTRKVFNKGYMTMMG 192 (250)
Q Consensus 138 l--------------~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~li~ 192 (250)
+ +..|.+.-++..+.-.....+. ++. ..++++++|..+++. +.++-+
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra-~~arc~~~~aDIyR~~gd~e~af~rYe~A-------m~~m~~ 278 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA-LQARCLLCFADIYRSRGDLERAFRRYEQA-------MGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHhcccHhHHHHHHHHH-------HHHHhh
Q ss_pred HHHhcCCHH
Q 037164 193 LLLKLDDVK 201 (250)
Q Consensus 193 ~~~~~g~~~ 201 (250)
.=-+.|+++
T Consensus 279 ~gdrmgqv~ 287 (518)
T KOG1941|consen 279 LGDRMGQVE 287 (518)
T ss_pred hhhhHHHHH
No 488
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=7.5e+02 Score=23.85 Aligned_cols=114 Identities=7% Similarity=-0.066 Sum_probs=61.6
Q ss_pred hhhccChhHHHHHHHHhhhhhccccccc---hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCLFFG---VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~---~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
+.+.|.+.+|.+.|.++.-..|-...-+ ..+|.++...-.+.=+.....+. .-=...++.+.+.++-.-+...
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~----Rr~l~~~~~~~~~ElAaYFt~~ 1076 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELE----RRKLKKPNLEQQLELAAYFTHC 1076 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeee----ecccCCchHHHHHHHHHHhhcC
Confidence 3567999999999999877644444444 44444444333221000000000 0001122333343344444445
Q ss_pred CCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH
Q 037164 91 SINGD--QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF 132 (250)
Q Consensus 91 gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 132 (250)
.++|- ..+..+-|+.|.+.+++..|..+-.++.+. +-.|..
T Consensus 1077 ~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel-~~~~~~ 1119 (1202)
T KOG0292|consen 1077 KLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLEL-APSPPV 1119 (1202)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCChH
Confidence 56653 344566678888889998888888888776 444443
No 489
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=21.11 E-value=2.4e+02 Score=18.13 Aligned_cols=65 Identities=9% Similarity=-0.047 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHH
Q 037164 45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a 115 (250)
+.+++..+.+.|+ -+....+.+..+-...|+.+.|.+++..+. + .+.-|...+++.-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 3466777777664 222333333333345677777888887766 4 344566677777766654433
No 490
>PLN02428 lipoic acid synthase
Probab=21.09 E-value=3.1e+02 Score=22.90 Aligned_cols=48 Identities=4% Similarity=-0.068 Sum_probs=24.4
Q ss_pred cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 74 TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
...++..+++++..++. .|+..+.+.+|-+++ -..++..++++.+.+.
T Consensus 227 ~~sye~~Le~L~~ak~~--~pGi~tkSg~MvGLG--ET~Edv~e~l~~Lrel 274 (349)
T PLN02428 227 RAGYKQSLDVLKHAKES--KPGLLTKTSIMLGLG--ETDEEVVQTMEDLRAA 274 (349)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCeEEEeEEEecC--CCHHHHHHHHHHHHHc
Confidence 34556666666655544 244445555555552 3444555555555543
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.00 E-value=2.6e+02 Score=22.91 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 204 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.++|+.++.+++.|.-..|--+.-.+.+.=.+.+...+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 46777788788888777777777777777777777777776653
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.93 E-value=4e+02 Score=20.64 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=37.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh-cCChhHHHHHHHHHh
Q 037164 66 IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA-ASDIHGMDKIINMTE 123 (250)
Q Consensus 66 ~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~-~~~~~~a~~~~~~m~ 123 (250)
.+...+-+.|+++++.++++++...+...+..=-|.|-.+|-. .|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3556667788888888888888888777776666666666633 355556666666653
No 493
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.93 E-value=5.1e+02 Score=21.76 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHh----hhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLG----IRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~----~li~~~~~~~~~~~a~~ 117 (250)
..+|-..++++++. ++.|...++.-=.+|.-.|+.+.....++..... ..||...|. .+--++-..|-+++|++
T Consensus 119 ~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 66777788888775 7788888888888888888888888888876544 445554443 23345556788888887
Q ss_pred HHHHHhh
Q 037164 118 IINMTES 124 (250)
Q Consensus 118 ~~~~m~~ 124 (250)
.-++..+
T Consensus 197 ~A~ralq 203 (491)
T KOG2610|consen 197 QADRALQ 203 (491)
T ss_pred HHHhhcc
Confidence 7766554
No 494
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=1.1e+02 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCC
Q 037164 184 NKGYMTMMGLLLKLD-----DVKGAEKTLRNWTSKN 214 (250)
Q Consensus 184 ~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~ 214 (250)
..+..-+|+.+.+.+ ++.+|.+++++|.+..
T Consensus 19 ~~~~~eli~~~~~~~gF~a~~l~eA~~I~~~m~~~~ 54 (318)
T COG1899 19 DISVSELIDEMYKTGGFQARRLAEAVEILREMLESR 54 (318)
T ss_pred CCcHHHHHHHHHhhccccchhHHHHHHHHHHHHhhc
Confidence 356778888665554 7899999999999764
No 495
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=20.80 E-value=5.2e+02 Score=21.89 Aligned_cols=18 Identities=0% Similarity=-0.326 Sum_probs=14.1
Q ss_pred cCCCCCchhHhhhHHHHH
Q 037164 90 KSINGDQFTLGIRPSAYA 107 (250)
Q Consensus 90 ~gi~p~~~ty~~li~~~~ 107 (250)
+|+.||+..|+.++-...
T Consensus 315 k~l~pNvD~ysa~l~~~l 332 (384)
T cd06116 315 RKLYPNVDFYSGLIYQAL 332 (384)
T ss_pred cCCCCChHHHHHHHHHHh
Confidence 788899999888876544
No 496
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=20.70 E-value=1.2e+02 Score=24.77 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 184 NKGYMTMMGLLLKLD----DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 184 ~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
..+...|++.|.+.| ++.+|.+++++|.+. ++..+|-++-.+..-+|. ..++..|.++|
T Consensus 22 ~~~v~~l~~~~~~~gF~A~~l~~A~~i~~~ml~~---~~~~ifL~~tg~mvsaGl----r~ii~~Li~~~ 84 (316)
T PRK02301 22 GMTVGELVREYGGAGFGAGRLAEAVDIYEEMLAD---DDVTKFFGLAGAMVPAGM----RGIVSDLIRDG 84 (316)
T ss_pred CCcHHHHHHHHHhcCccHHHHHHHHHHHHHHHhC---CCCeEEEEcccchhHHHH----HHHHHHHHHcC
Confidence 357888888888754 789999999999732 344445555444444443 45555665554
No 497
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=20.69 E-value=94 Score=21.00 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCCCCch
Q 037164 79 KIDALMLEMEEKSINGDQF 97 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ 97 (250)
--.-+.++|..+|..||..
T Consensus 53 yH~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 53 YHLLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHHHcCCCCChh
Confidence 3456788999999999883
No 498
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=20.67 E-value=2.7e+02 Score=18.56 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+.+....+.+...|..|++...-..+. .|......+.++.+...
T Consensus 4 e~V~~Aa~~L~~~G~~pT~~~Vr~~lG----~GS~~ti~~~l~~w~~~ 47 (120)
T PF11740_consen 4 EDVIEAADELLAAGKKPTVRAVRERLG----GGSMSTISKHLKEWREE 47 (120)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHC----CCCHHHHHHHHHHHHHh
Confidence 445555666677777775544333322 66777777777666543
No 499
>COG5210 GTPase-activating protein [General function prediction only]
Probab=20.63 E-value=2.6e+02 Score=24.54 Aligned_cols=61 Identities=5% Similarity=-0.282 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhh
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~l 102 (250)
-+..-++++.|.+.|+.+...++.-++..+.+....+.+.++++-+--.|+.-....+-++
T Consensus 358 ~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~ 418 (496)
T COG5210 358 EELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAI 418 (496)
T ss_pred HHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4555678888999999999999999999999999999999999998877765444444333
No 500
>PRK10292 hypothetical protein; Provisional
Probab=20.39 E-value=2.1e+02 Score=17.12 Aligned_cols=37 Identities=3% Similarity=-0.044 Sum_probs=26.3
Q ss_pred HHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 209 NWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 209 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
.|...|.+|+.....-+|+.-..+++.+......+.|
T Consensus 24 ~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 24 EMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred HHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 4677899999888888887777777665554444444
Done!