Query 037164
Match_columns 250
No_of_seqs 184 out of 1463
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 15:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.7E-33 9.1E-38 237.2 17.8 171 9-232 31-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.4E-32 8.4E-37 231.3 19.3 179 45-250 9-206 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.1E-22 3.7E-27 179.1 9.5 126 9-154 132-263 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 9.3E-23 3.2E-27 179.5 7.2 130 57-239 123-256 (1134)
5 2xpi_A Anaphase-promoting comp 99.9 6E-20 2E-24 158.6 20.4 231 9-247 310-578 (597)
6 2xpi_A Anaphase-promoting comp 99.8 4.9E-19 1.7E-23 152.9 23.2 233 9-248 277-545 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.7 3.2E-14 1.1E-18 116.5 23.5 198 42-247 151-367 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.6 8E-14 2.7E-18 114.2 20.8 228 12-247 41-333 (388)
9 2y4t_A DNAJ homolog subfamily 99.6 2.3E-13 8E-18 113.3 20.0 234 9-247 31-357 (450)
10 2y4t_A DNAJ homolog subfamily 99.6 5.5E-13 1.9E-17 111.0 20.9 197 42-247 42-285 (450)
11 3hym_B Cell division cycle pro 99.5 1.9E-12 6.5E-17 103.0 20.5 231 9-247 27-298 (330)
12 1fch_A Peroxisomal targeting s 99.4 7.1E-12 2.4E-16 101.4 17.5 228 12-244 72-355 (368)
13 3ieg_A DNAJ homolog subfamily 99.4 4.6E-11 1.6E-15 95.9 22.1 232 11-248 44-335 (359)
14 3cv0_A Peroxisome targeting si 99.4 5.6E-12 1.9E-16 100.2 15.2 228 10-245 27-312 (327)
15 4eqf_A PEX5-related protein; a 99.4 6.6E-12 2.3E-16 101.8 15.6 227 11-243 72-351 (365)
16 2gw1_A Mitochondrial precursor 99.4 2.3E-11 8E-16 102.6 18.6 79 12-91 14-103 (514)
17 2gw1_A Mitochondrial precursor 99.4 1.2E-11 4.3E-16 104.3 16.8 224 16-248 201-478 (514)
18 1fch_A Peroxisomal targeting s 99.4 4.4E-11 1.5E-15 96.7 19.0 230 13-247 34-313 (368)
19 3uq3_A Heat shock protein STI1 99.4 3.2E-11 1.1E-15 92.5 17.2 198 42-248 21-236 (258)
20 4eqf_A PEX5-related protein; a 99.4 3.6E-11 1.2E-15 97.5 16.9 197 42-247 81-309 (365)
21 2ho1_A Type 4 fimbrial biogene 99.4 1.4E-10 4.7E-15 89.0 18.7 182 42-248 53-238 (252)
22 3ieg_A DNAJ homolog subfamily 99.4 4E-10 1.4E-14 90.4 22.2 228 12-248 11-301 (359)
23 3hym_B Cell division cycle pro 99.3 5.9E-10 2E-14 88.5 21.9 202 42-248 38-265 (330)
24 3mkr_A Coatomer subunit epsilo 99.3 2.2E-10 7.4E-15 90.5 18.8 222 14-248 9-264 (291)
25 1b89_A Protein (clathrin heavy 99.3 7.1E-13 2.4E-17 108.9 3.8 203 14-247 13-235 (449)
26 2vq2_A PILW, putative fimbrial 99.3 1.8E-09 6.3E-14 80.8 21.7 191 11-247 15-210 (225)
27 3fp2_A TPR repeat-containing p 99.3 3.7E-10 1.3E-14 95.9 19.6 229 11-247 32-406 (537)
28 3cv0_A Peroxisome targeting si 99.3 5.3E-10 1.8E-14 88.6 19.0 200 42-247 37-268 (327)
29 1xnf_A Lipoprotein NLPI; TPR, 99.3 5.7E-10 2E-14 86.4 18.8 221 13-242 14-269 (275)
30 3fp2_A TPR repeat-containing p 99.3 5.8E-10 2E-14 94.7 20.1 137 12-152 251-407 (537)
31 2q7f_A YRRB protein; TPR, prot 99.2 2.3E-10 7.9E-15 87.0 14.0 181 42-248 39-222 (243)
32 3u4t_A TPR repeat-containing p 99.2 1.8E-09 6.2E-14 83.5 18.2 206 12-247 11-249 (272)
33 3uq3_A Heat shock protein STI1 99.2 8.1E-10 2.8E-14 84.5 14.6 182 60-248 4-202 (258)
34 1xnf_A Lipoprotein NLPI; TPR, 99.2 8.1E-10 2.8E-14 85.5 14.4 203 42-248 21-244 (275)
35 1ouv_A Conserved hypothetical 99.1 1.2E-08 4.2E-13 79.1 20.0 206 12-249 14-252 (273)
36 2ond_A Cleavage stimulation fa 99.1 2.7E-08 9.1E-13 78.9 21.3 82 167-248 183-270 (308)
37 3mkr_A Coatomer subunit epsilo 99.1 5.8E-10 2E-14 88.0 11.4 193 42-248 15-229 (291)
38 2pl2_A Hypothetical conserved 99.1 5.4E-09 1.8E-13 78.7 15.6 157 59-247 37-213 (217)
39 3vtx_A MAMA; tetratricopeptide 99.1 1.4E-08 4.9E-13 73.9 17.5 165 59-248 3-170 (184)
40 3nf1_A KLC 1, kinesin light ch 99.1 4.1E-09 1.4E-13 82.8 15.0 204 10-247 33-306 (311)
41 3edt_B KLC 2, kinesin light ch 99.1 2.2E-09 7.4E-14 83.1 12.2 188 42-248 24-281 (283)
42 2vq2_A PILW, putative fimbrial 99.1 2E-08 6.8E-13 75.0 16.9 166 58-248 5-176 (225)
43 2pl2_A Hypothetical conserved 99.0 2.2E-08 7.6E-13 75.3 16.6 176 58-248 2-180 (217)
44 2ho1_A Type 4 fimbrial biogene 99.0 2.8E-08 9.5E-13 75.9 17.0 159 61-248 37-204 (252)
45 3as5_A MAMA; tetratricopeptide 99.0 2E-08 7E-13 72.5 15.3 155 62-247 9-172 (186)
46 1b89_A Protein (clathrin heavy 99.0 1.4E-10 4.9E-15 95.3 3.3 166 42-242 19-200 (449)
47 2h6f_A Protein farnesyltransfe 99.0 6.5E-08 2.2E-12 79.1 18.7 213 11-245 104-344 (382)
48 3ro2_A PINS homolog, G-protein 98.9 1E-08 3.5E-13 81.1 10.8 237 12-248 13-332 (338)
49 4a1s_A PINS, partner of inscut 98.9 1.2E-08 4.1E-13 83.7 11.2 236 12-247 56-371 (411)
50 2fo7_A Synthetic consensus TPR 98.9 7.6E-08 2.6E-12 65.5 13.4 131 62-248 2-132 (136)
51 3sf4_A G-protein-signaling mod 98.9 2.2E-08 7.6E-13 81.6 12.1 236 12-247 17-335 (406)
52 4abn_A Tetratricopeptide repea 98.9 6.7E-08 2.3E-12 81.4 15.3 193 42-243 84-316 (474)
53 2q7f_A YRRB protein; TPR, prot 98.9 5.8E-08 2E-12 73.5 13.4 159 59-248 21-188 (243)
54 1ouv_A Conserved hypothetical 98.8 9.2E-07 3.2E-11 68.4 19.7 177 42-249 22-216 (273)
55 4g1t_A Interferon-induced prot 98.8 3E-07 1E-11 76.8 17.2 227 18-249 152-460 (472)
56 3u4t_A TPR repeat-containing p 98.8 6.2E-07 2.1E-11 69.1 17.3 181 42-247 19-207 (272)
57 2ooe_A Cleavage stimulation fa 98.8 1.7E-06 5.7E-11 73.8 21.4 198 44-247 256-491 (530)
58 2xm6_A Protein corresponding t 98.8 1.7E-06 5.8E-11 72.9 21.0 28 220-247 364-395 (490)
59 2xm6_A Protein corresponding t 98.8 1.5E-06 5E-11 73.3 20.5 79 168-249 346-433 (490)
60 3nf1_A KLC 1, kinesin light ch 98.8 1E-07 3.6E-12 74.7 12.6 171 58-247 24-223 (311)
61 4gyw_A UDP-N-acetylglucosamine 98.8 3.6E-07 1.2E-11 80.6 16.8 163 58-247 6-173 (723)
62 2ond_A Cleavage stimulation fa 98.7 1.2E-06 4.1E-11 69.3 17.5 186 21-213 33-270 (308)
63 3ulq_A Response regulator aspa 98.7 5.6E-07 1.9E-11 73.3 15.9 212 13-247 21-292 (383)
64 2fo7_A Synthetic consensus TPR 98.7 4E-07 1.4E-11 61.8 12.1 112 11-124 8-131 (136)
65 3ulq_A Response regulator aspa 98.7 6.3E-07 2.2E-11 73.0 15.2 161 62-247 185-367 (383)
66 3vtx_A MAMA; tetratricopeptide 98.7 1.9E-06 6.5E-11 62.4 16.2 130 59-212 37-169 (184)
67 4i17_A Hypothetical protein; T 98.7 1.8E-06 6.1E-11 64.9 15.5 163 60-247 6-208 (228)
68 4g1t_A Interferon-induced prot 98.6 1.1E-05 3.9E-10 67.1 21.4 228 12-247 102-400 (472)
69 3edt_B KLC 2, kinesin light ch 98.6 5.2E-07 1.8E-11 69.5 11.2 197 14-212 11-280 (283)
70 3rjv_A Putative SEL1 repeat pr 98.6 1.4E-05 4.8E-10 59.6 18.1 177 43-250 3-199 (212)
71 3q15_A PSP28, response regulat 98.6 3.4E-06 1.2E-10 68.6 15.8 61 185-247 301-364 (378)
72 3mv2_B Coatomer subunit epsilo 98.5 2.1E-06 7.2E-11 67.6 13.4 181 45-248 85-282 (310)
73 3as5_A MAMA; tetratricopeptide 98.5 1.6E-06 5.3E-11 62.4 11.7 123 96-248 8-139 (186)
74 2yhc_A BAMD, UPF0169 lipoprote 98.5 5.6E-05 1.9E-09 56.7 19.9 180 61-249 4-214 (225)
75 3q15_A PSP28, response regulat 98.5 3.5E-06 1.2E-10 68.5 13.9 211 15-246 23-288 (378)
76 1hz4_A MALT regulatory protein 98.5 2.7E-05 9.1E-10 62.9 18.6 235 13-247 23-321 (373)
77 3qky_A Outer membrane assembly 98.5 4.1E-05 1.4E-09 58.7 18.8 178 59-248 13-224 (261)
78 3ro2_A PINS homolog, G-protein 98.5 4.3E-06 1.5E-10 65.8 13.5 205 42-247 21-291 (338)
79 1xi4_A Clathrin heavy chain; a 98.4 1.6E-05 5.6E-10 73.7 18.0 206 12-244 1057-1275(1630)
80 4a1s_A PINS, partner of inscut 98.4 1.8E-06 6E-11 70.7 11.1 205 42-247 64-331 (411)
81 2vsy_A XCC0866; transferase, g 98.4 5.5E-06 1.9E-10 71.2 14.3 146 43-213 6-157 (568)
82 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.1E-05 3.6E-10 59.8 14.1 127 62-247 7-149 (213)
83 1xi4_A Clathrin heavy chain; a 98.4 2.1E-05 7.2E-10 72.9 18.2 203 16-246 1088-1307(1630)
84 2r5s_A Uncharacterized protein 98.4 3.6E-06 1.2E-10 60.7 11.1 165 62-247 7-172 (176)
85 2h6f_A Protein farnesyltransfe 98.4 1.1E-05 3.7E-10 65.9 14.9 178 42-245 113-302 (382)
86 4gyw_A UDP-N-acetylglucosamine 98.4 2.4E-05 8.1E-10 69.2 17.4 150 13-211 18-172 (723)
87 4i17_A Hypothetical protein; T 98.4 5.3E-05 1.8E-09 56.7 17.1 110 12-124 15-145 (228)
88 4abn_A Tetratricopeptide repea 98.4 7.6E-06 2.6E-10 68.8 13.4 182 20-209 84-317 (474)
89 3qou_A Protein YBBN; thioredox 98.3 1.7E-05 5.8E-10 62.1 14.4 169 57-247 113-283 (287)
90 3u3w_A Transcriptional activat 98.3 1.8E-05 6.1E-10 62.0 14.3 159 42-247 91-265 (293)
91 2ifu_A Gamma-SNAP; membrane fu 98.3 1.8E-05 6.2E-10 62.5 13.8 90 17-122 4-102 (307)
92 3sf4_A G-protein-signaling mod 98.3 2.2E-05 7.4E-10 63.7 14.6 205 42-247 25-295 (406)
93 1qqe_A Vesicular transport pro 98.3 2.2E-05 7.7E-10 61.5 13.9 62 185-246 159-226 (292)
94 2ooe_A Cleavage stimulation fa 98.2 0.00014 4.7E-09 61.9 18.7 164 44-212 304-491 (530)
95 1a17_A Serine/threonine protei 98.2 5.9E-05 2E-09 53.1 12.6 130 61-246 13-144 (166)
96 1qqe_A Vesicular transport pro 98.2 7.8E-05 2.7E-09 58.4 14.2 202 19-245 32-266 (292)
97 1na0_A Designed protein CTPR3; 98.1 5.7E-05 2E-09 50.1 11.7 114 61-230 9-122 (125)
98 2c2l_A CHIP, carboxy terminus 98.1 5.2E-05 1.8E-09 59.1 12.9 78 42-122 20-98 (281)
99 3qky_A Outer membrane assembly 98.1 4.7E-05 1.6E-09 58.4 12.3 164 42-213 31-224 (261)
100 2qfc_A PLCR protein; TPR, HTH, 98.1 5.6E-05 1.9E-09 59.1 12.9 158 42-246 91-264 (293)
101 4e6h_A MRNA 3'-END-processing 98.1 0.00027 9.2E-09 62.0 17.7 199 44-247 327-569 (679)
102 3e4b_A ALGK; tetratricopeptide 98.1 0.0003 1E-08 58.7 17.3 181 63-249 178-388 (452)
103 3urz_A Uncharacterized protein 98.1 0.00031 1.1E-08 52.0 15.3 176 13-220 13-191 (208)
104 2e2e_A Formate-dependent nitri 98.1 0.0001 3.5E-09 52.8 12.4 111 13-125 19-144 (177)
105 2vyi_A SGTA protein; chaperone 98.1 6.9E-05 2.4E-09 50.2 10.7 121 59-235 10-130 (131)
106 3gyz_A Chaperone protein IPGC; 98.1 0.00013 4.5E-09 51.3 12.4 81 42-124 52-132 (151)
107 1na0_A Designed protein CTPR3; 98.1 8.9E-05 3.1E-09 49.1 11.2 82 42-125 25-106 (125)
108 1hz4_A MALT regulatory protein 98.0 0.0012 4E-08 53.2 19.4 206 42-247 30-281 (373)
109 3gw4_A Uncharacterized protein 98.0 7.3E-05 2.5E-09 54.5 11.1 141 60-247 25-175 (203)
110 2lni_A Stress-induced-phosphop 98.0 0.00012 4.2E-09 49.2 11.5 120 58-233 13-132 (133)
111 4gco_A Protein STI-1; structur 98.0 0.00011 3.9E-09 49.8 11.0 81 42-124 29-109 (126)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.0 8.7E-05 3E-09 54.7 11.2 108 13-124 15-149 (213)
113 2pzi_A Probable serine/threoni 98.0 4.4E-05 1.5E-09 67.1 10.8 170 42-237 407-586 (681)
114 2pzi_A Probable serine/threoni 98.0 4.3E-05 1.5E-09 67.2 10.7 171 15-211 402-600 (681)
115 3e4b_A ALGK; tetratricopeptide 98.0 0.00054 1.9E-08 57.1 16.8 94 10-111 9-121 (452)
116 2vsy_A XCC0866; transferase, g 98.0 0.00017 5.7E-09 61.9 13.9 107 17-125 2-120 (568)
117 3dra_A Protein farnesyltransfe 98.0 0.00055 1.9E-08 54.0 15.7 198 43-247 50-286 (306)
118 1p5q_A FKBP52, FK506-binding p 97.9 0.00012 4.2E-09 58.6 11.9 147 42-246 129-292 (336)
119 2xcb_A PCRH, regulatory protei 97.9 0.00011 3.9E-09 50.7 10.4 81 42-124 34-114 (142)
120 4ga2_A E3 SUMO-protein ligase 97.9 9.3E-05 3.2E-09 51.8 9.9 81 42-124 13-93 (150)
121 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.00063 2.2E-08 50.9 15.0 146 61-214 41-214 (225)
122 4ga2_A E3 SUMO-protein ligase 97.9 6.9E-05 2.4E-09 52.5 9.0 109 13-124 6-128 (150)
123 1a17_A Serine/threonine protei 97.9 0.00014 4.7E-09 51.1 10.5 81 42-124 29-109 (166)
124 2vgx_A Chaperone SYCD; alterna 97.9 0.00013 4.3E-09 51.1 10.0 81 42-124 37-117 (148)
125 2r5s_A Uncharacterized protein 97.9 0.00011 3.9E-09 52.7 10.0 109 12-124 14-136 (176)
126 3mv2_B Coatomer subunit epsilo 97.9 0.00086 2.9E-08 52.8 15.0 143 80-247 85-239 (310)
127 2ifu_A Gamma-SNAP; membrane fu 97.9 0.0005 1.7E-08 54.1 13.9 195 17-240 29-253 (307)
128 1elw_A TPR1-domain of HOP; HOP 97.8 0.00082 2.8E-08 43.8 12.5 82 42-125 20-101 (118)
129 2kck_A TPR repeat; tetratricop 97.8 0.00052 1.8E-08 44.4 11.4 81 43-125 23-106 (112)
130 2e2e_A Formate-dependent nitri 97.8 0.00055 1.9E-08 48.9 12.2 116 42-213 26-144 (177)
131 3upv_A Heat shock protein STI1 97.8 0.00046 1.6E-08 46.3 11.0 81 42-124 20-100 (126)
132 3urz_A Uncharacterized protein 97.8 0.00038 1.3E-08 51.5 11.5 158 64-248 7-186 (208)
133 4b4t_Q 26S proteasome regulato 97.8 0.0012 4.2E-08 54.1 15.6 155 70-247 13-203 (434)
134 2kck_A TPR repeat; tetratricop 97.8 0.00062 2.1E-08 44.0 11.1 63 61-124 6-68 (112)
135 2lni_A Stress-induced-phosphop 97.7 0.00049 1.7E-08 46.2 10.7 81 42-124 32-112 (133)
136 2c2l_A CHIP, carboxy terminus 97.7 0.0029 9.9E-08 49.1 16.4 88 60-151 3-100 (281)
137 2vyi_A SGTA protein; chaperone 97.7 0.00039 1.3E-08 46.3 9.9 82 42-125 28-109 (131)
138 3ro3_A PINS homolog, G-protein 97.7 0.00029 9.8E-09 48.9 9.5 139 61-247 9-157 (164)
139 3gyz_A Chaperone protein IPGC; 97.7 0.00036 1.2E-08 49.0 9.9 96 97-247 37-132 (151)
140 3sz7_A HSC70 cochaperone (SGT) 97.7 0.0006 2E-08 48.2 11.0 81 42-124 27-107 (164)
141 3u3w_A Transcriptional activat 97.7 0.0041 1.4E-07 48.4 16.7 63 185-247 156-224 (293)
142 1elw_A TPR1-domain of HOP; HOP 97.7 0.0016 5.4E-08 42.4 12.5 98 60-212 3-100 (118)
143 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00049 1.7E-08 50.3 10.8 133 61-248 38-186 (198)
144 3q49_B STIP1 homology and U bo 97.7 0.00081 2.8E-08 45.5 11.0 63 60-123 42-104 (137)
145 1p5q_A FKBP52, FK506-binding p 97.7 0.00037 1.3E-08 55.7 10.5 63 61-124 196-258 (336)
146 4gcn_A Protein STI-1; structur 97.7 0.00047 1.6E-08 46.7 9.5 82 42-124 24-111 (127)
147 3k9i_A BH0479 protein; putativ 97.7 0.00012 4E-09 48.8 6.3 82 43-125 7-90 (117)
148 4b4t_Q 26S proteasome regulato 97.7 0.003 1E-07 51.8 16.1 203 13-247 13-244 (434)
149 4gco_A Protein STI-1; structur 97.6 0.0012 4E-08 44.6 11.0 97 61-212 13-109 (126)
150 1elr_A TPR2A-domain of HOP; HO 97.6 0.0005 1.7E-08 45.8 9.1 83 42-125 20-108 (131)
151 2kat_A Uncharacterized protein 97.6 0.00056 1.9E-08 45.1 9.1 80 43-124 2-81 (115)
152 1elr_A TPR2A-domain of HOP; HO 97.6 0.00081 2.8E-08 44.8 10.0 118 61-228 4-121 (131)
153 3gw4_A Uncharacterized protein 97.6 0.00049 1.7E-08 50.0 9.4 110 15-124 3-135 (203)
154 3rjv_A Putative SEL1 repeat pr 97.6 0.0057 2E-07 45.2 15.1 148 42-215 34-199 (212)
155 1hxi_A PEX5, peroxisome target 97.5 0.00078 2.7E-08 45.2 9.2 79 43-124 34-113 (121)
156 2vgx_A Chaperone SYCD; alterna 97.5 0.00096 3.3E-08 46.5 9.9 29 184-212 89-117 (148)
157 2xev_A YBGF; tetratricopeptide 97.5 0.0016 5.5E-08 43.5 10.8 62 62-125 40-105 (129)
158 4f3v_A ESX-1 secretion system 97.5 0.0018 6E-08 50.3 12.1 180 42-248 22-237 (282)
159 4e6h_A MRNA 3'-END-processing 97.5 0.0033 1.1E-07 55.1 15.1 170 42-213 359-570 (679)
160 3dra_A Protein farnesyltransfe 97.5 0.022 7.6E-07 44.8 18.9 202 16-224 44-298 (306)
161 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0021 7.2E-08 45.3 11.3 65 59-124 9-73 (164)
162 4gcn_A Protein STI-1; structur 97.4 0.0019 6.4E-08 43.6 10.2 103 61-212 8-111 (127)
163 3qou_A Protein YBBN; thioredox 97.4 0.00091 3.1E-08 52.1 9.8 110 12-124 125-247 (287)
164 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0021 7E-08 53.7 12.4 140 42-239 250-405 (457)
165 3q7a_A Farnesyltransferase alp 97.4 0.011 3.8E-07 47.3 15.2 198 43-247 71-330 (349)
166 2qfc_A PLCR protein; TPR, HTH, 97.4 0.016 5.3E-07 45.0 16.0 63 185-247 156-224 (293)
167 2dba_A Smooth muscle cell asso 97.4 0.0039 1.3E-07 42.5 11.2 98 59-212 26-127 (148)
168 2dba_A Smooth muscle cell asso 97.3 0.0027 9.2E-08 43.3 10.0 80 42-124 44-127 (148)
169 3q49_B STIP1 homology and U bo 97.3 0.0053 1.8E-07 41.4 11.3 92 58-152 6-106 (137)
170 3upv_A Heat shock protein STI1 97.3 0.0043 1.5E-07 41.4 10.5 89 60-151 3-100 (126)
171 2fbn_A 70 kDa peptidylprolyl i 97.3 0.00044 1.5E-08 50.5 5.8 81 42-124 54-150 (198)
172 1wao_1 Serine/threonine protei 97.3 0.00061 2.1E-08 57.3 7.3 106 12-120 14-134 (477)
173 1wao_1 Serine/threonine protei 97.3 0.0011 3.8E-08 55.7 8.7 52 70-123 15-67 (477)
174 3rkv_A Putative peptidylprolyl 97.2 0.017 5.7E-07 40.4 13.7 105 13-124 20-125 (162)
175 3ro3_A PINS homolog, G-protein 97.2 0.0017 5.9E-08 44.8 8.2 111 12-122 17-155 (164)
176 3n71_A Histone lysine methyltr 97.2 0.001 3.5E-08 56.1 7.6 131 70-247 318-463 (490)
177 1wy6_A Hypothetical protein ST 97.1 0.02 6.7E-07 39.0 11.8 137 107-250 18-156 (172)
178 2uy1_A Cleavage stimulation fa 97.1 0.042 1.4E-06 46.3 17.0 185 44-247 197-412 (493)
179 2xcb_A PCRH, regulatory protei 97.1 0.0044 1.5E-07 42.5 9.1 82 165-247 30-114 (142)
180 3ma5_A Tetratricopeptide repea 97.1 0.0039 1.3E-07 40.0 8.2 66 58-124 4-69 (100)
181 1klx_A Cysteine rich protein B 97.1 0.0061 2.1E-07 41.8 9.7 108 15-129 6-129 (138)
182 3ma5_A Tetratricopeptide repea 97.1 0.0025 8.7E-08 40.9 7.2 64 183-247 6-69 (100)
183 2xev_A YBGF; tetratricopeptide 97.0 0.0031 1.1E-07 42.0 7.5 63 185-248 40-105 (129)
184 3q7a_A Farnesyltransferase alp 97.0 0.058 2E-06 43.2 15.7 194 13-213 63-331 (349)
185 4f3v_A ESX-1 secretion system 97.0 0.0017 5.8E-08 50.4 6.6 114 10-124 108-236 (282)
186 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0044 1.5E-07 49.5 9.1 62 62-124 231-292 (338)
187 2if4_A ATFKBP42; FKBP-like, al 96.9 0.0041 1.4E-07 49.7 8.9 130 61-247 179-327 (338)
188 2kat_A Uncharacterized protein 96.9 0.0045 1.5E-07 40.6 7.8 65 182-247 17-81 (115)
189 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.0043 1.5E-07 51.8 9.3 104 13-125 277-380 (457)
190 2uy1_A Cleavage stimulation fa 96.9 0.15 5.1E-06 43.0 19.4 190 16-213 6-242 (493)
191 1ihg_A Cyclophilin 40; ppiase 96.8 0.0078 2.7E-07 48.8 9.8 125 61-240 223-362 (370)
192 1hxi_A PEX5, peroxisome target 96.8 0.0016 5.6E-08 43.5 4.6 83 165-248 29-114 (121)
193 2l6j_A TPR repeat-containing p 96.8 0.0075 2.6E-07 38.8 7.8 66 59-125 2-67 (111)
194 3k9i_A BH0479 protein; putativ 96.6 0.0045 1.6E-07 40.8 5.9 64 184-248 27-90 (117)
195 1ihg_A Cyclophilin 40; ppiase 96.6 0.011 3.9E-07 47.8 9.3 63 60-124 272-335 (370)
196 1na3_A Designed protein CTPR2; 96.6 0.019 6.3E-07 35.4 8.5 65 60-125 8-72 (91)
197 2l6j_A TPR repeat-containing p 96.6 0.0055 1.9E-07 39.5 6.2 60 186-246 6-65 (111)
198 2hr2_A Hypothetical protein; a 96.6 0.025 8.6E-07 39.8 9.6 101 13-124 20-130 (159)
199 3rkv_A Putative peptidylprolyl 96.5 0.019 6.5E-07 40.1 9.0 63 184-247 63-125 (162)
200 1na3_A Designed protein CTPR2; 96.5 0.0075 2.6E-07 37.2 6.2 64 184-248 9-72 (91)
201 1klx_A Cysteine rich protein B 96.4 0.089 3E-06 35.8 11.4 100 42-150 11-124 (138)
202 3n71_A Histone lysine methyltr 96.4 0.026 8.8E-07 47.5 10.1 114 129-247 296-421 (490)
203 1zu2_A Mitochondrial import re 96.2 0.018 6.1E-07 40.5 6.8 103 42-150 18-145 (158)
204 3qww_A SET and MYND domain-con 96.1 0.008 2.7E-07 49.8 5.6 83 42-124 314-410 (433)
205 3qww_A SET and MYND domain-con 96.1 0.051 1.8E-06 45.0 10.4 79 169-247 321-410 (433)
206 3qwp_A SET and MYND domain-con 96.0 0.029 1E-06 46.4 8.6 83 42-124 303-399 (429)
207 3u64_A Protein TP_0956; tetrat 95.9 0.14 4.9E-06 39.7 11.2 104 42-150 179-296 (301)
208 1pc2_A Mitochondria fission pr 95.9 0.049 1.7E-06 37.9 7.8 85 42-131 14-103 (152)
209 1zu2_A Mitochondrial import re 95.8 0.056 1.9E-06 37.9 8.1 90 13-105 11-133 (158)
210 2kc7_A BFR218_protein; tetratr 95.8 0.068 2.3E-06 33.5 8.0 57 67-125 6-64 (99)
211 2hr2_A Hypothetical protein; a 95.6 0.018 6.3E-07 40.5 5.0 62 186-247 59-130 (159)
212 3qwp_A SET and MYND domain-con 95.5 0.043 1.5E-06 45.4 7.7 63 185-247 330-399 (429)
213 2kc7_A BFR218_protein; tetratr 95.5 0.03 1E-06 35.2 5.4 26 186-211 37-62 (99)
214 1v54_E Cytochrome C oxidase po 95.4 0.1 3.4E-06 33.4 7.3 72 76-149 25-96 (109)
215 3dss_A Geranylgeranyl transfer 95.4 0.76 2.6E-05 36.5 17.8 190 43-247 91-303 (331)
216 3dss_A Geranylgeranyl transfer 95.4 0.79 2.7E-05 36.3 15.4 177 20-212 90-303 (331)
217 3ly7_A Transcriptional activat 95.2 0.18 6.2E-06 40.5 10.0 64 58-123 274-337 (372)
218 2v5f_A Prolyl 4-hydroxylase su 95.0 0.096 3.3E-06 33.7 6.7 64 184-247 5-74 (104)
219 2v5f_A Prolyl 4-hydroxylase su 94.9 0.18 6.1E-06 32.3 7.8 66 59-124 3-74 (104)
220 1dce_A Protein (RAB geranylger 94.4 1 3.5E-05 38.6 13.5 82 42-125 45-138 (567)
221 1v54_E Cytochrome C oxidase po 94.2 0.28 9.7E-06 31.3 7.0 60 44-104 28-87 (109)
222 2y69_E Cytochrome C oxidase su 94.1 0.5 1.7E-05 31.9 8.3 71 77-149 69-139 (152)
223 3bee_A Putative YFRE protein; 93.7 0.27 9.1E-06 31.0 6.5 63 185-248 7-72 (93)
224 1dce_A Protein (RAB geranylger 93.6 0.37 1.3E-05 41.3 9.1 103 20-124 89-220 (567)
225 3ly7_A Transcriptional activat 93.6 0.77 2.6E-05 37.0 10.2 142 91-247 189-338 (372)
226 1wy6_A Hypothetical protein ST 93.5 0.83 2.8E-05 31.2 8.6 110 17-129 20-157 (172)
227 3mkq_B Coatomer subunit alpha; 93.0 1.7 5.9E-05 30.9 11.0 50 69-124 13-62 (177)
228 2ff4_A Probable regulatory pro 92.4 2.5 8.6E-05 34.2 12.1 72 63-135 173-248 (388)
229 1pc2_A Mitochondria fission pr 92.3 0.46 1.6E-05 33.0 6.4 65 182-247 30-99 (152)
230 2y69_E Cytochrome C oxidase su 91.8 0.91 3.1E-05 30.7 7.0 60 44-104 71-130 (152)
231 1nzn_A CGI-135 protein, fissio 91.4 1.4 4.8E-05 29.4 7.8 81 42-124 17-102 (126)
232 3mkq_A Coatomer beta'-subunit; 90.3 3 0.0001 36.9 11.3 49 70-124 661-709 (814)
233 3mkq_A Coatomer beta'-subunit; 89.7 1.5 5E-05 38.8 8.9 58 59-125 679-736 (814)
234 3bee_A Putative YFRE protein; 89.2 2.7 9.3E-05 26.1 11.2 66 58-125 3-72 (93)
235 4gns_B Protein CSD3, chitin bi 88.3 7.4 0.00025 34.5 11.9 112 10-123 254-398 (754)
236 3u64_A Protein TP_0956; tetrat 87.3 2.8 9.5E-05 32.6 7.7 65 184-248 199-269 (301)
237 2ff4_A Probable regulatory pro 85.7 1.8 6E-05 35.2 6.3 59 188-247 175-233 (388)
238 1y8m_A FIS1; mitochondria, unk 83.7 8.3 0.00029 26.3 8.1 66 58-124 36-105 (144)
239 3mkq_B Coatomer subunit alpha; 82.8 7.3 0.00025 27.7 7.6 78 165-244 17-114 (177)
240 1nzn_A CGI-135 protein, fissio 81.2 7 0.00024 26.0 6.7 19 193-211 83-101 (126)
241 4gns_B Protein CSD3, chitin bi 77.9 13 0.00044 33.0 9.1 53 192-245 345-397 (754)
242 4h7y_A Dual specificity protei 77.8 2.7 9.3E-05 29.1 3.8 50 198-248 74-123 (161)
243 3o48_A Mitochondria fission 1 77.2 14 0.00048 24.8 7.2 84 165-248 19-107 (134)
244 2uwj_G Type III export protein 76.5 12 0.00042 23.8 6.3 84 42-135 22-105 (115)
245 2p58_C Putative type III secre 76.1 13 0.00043 23.8 7.3 84 42-135 23-106 (116)
246 4b4t_R RPN7, 26S proteasome re 75.5 11 0.00036 31.0 7.6 83 42-124 110-196 (429)
247 4b4t_P 26S proteasome regulato 74.5 35 0.0012 28.1 13.4 155 75-246 30-204 (445)
248 3esl_A Checkpoint serine/threo 74.3 22 0.00076 25.8 8.7 59 74-133 92-151 (202)
249 2fe3_A Peroxide operon regulat 72.2 7.2 0.00025 26.5 5.0 68 169-236 6-73 (145)
250 3esl_A Checkpoint serine/threo 69.0 30 0.001 25.1 9.3 52 198-249 93-145 (202)
251 2xig_A Ferric uptake regulatio 68.2 9.1 0.00031 26.2 4.8 68 169-236 11-78 (150)
252 1zbp_A Hypothetical protein VP 67.9 13 0.00044 28.4 5.8 51 193-244 6-56 (273)
253 1y8m_A FIS1; mitochondria, unk 66.3 28 0.00096 23.7 8.6 47 201-247 59-105 (144)
254 2wpv_A GET4, UPF0363 protein Y 65.2 47 0.0016 25.9 9.7 78 42-119 73-157 (312)
255 4b4t_S RPN3, 26S proteasome re 64.3 65 0.0022 27.2 10.4 61 61-124 231-298 (523)
256 4h7y_A Dual specificity protei 63.6 34 0.0012 23.7 8.6 57 74-132 73-129 (161)
257 4ets_A Ferric uptake regulatio 63.5 9.4 0.00032 26.6 4.2 68 169-236 17-86 (162)
258 3ffl_A Anaphase-promoting comp 63.5 20 0.00068 25.2 5.7 63 185-247 21-91 (167)
259 4aez_C MAD3, mitotic spindle c 62.5 44 0.0015 24.6 8.0 80 167-248 98-179 (223)
260 2zu6_B Programmed cell death p 61.8 51 0.0017 25.6 8.4 62 187-249 169-232 (307)
261 2wvi_A Mitotic checkpoint seri 61.3 39 0.0013 23.6 7.9 87 42-134 46-133 (164)
262 4b4t_R RPN7, 26S proteasome re 61.3 11 0.00039 30.8 4.9 60 186-245 133-194 (429)
263 2wvi_A Mitotic checkpoint seri 61.2 39 0.0013 23.6 8.3 48 201-248 77-125 (164)
264 4a1g_A Mitotic checkpoint seri 59.4 40 0.0014 23.2 8.2 48 201-248 82-130 (152)
265 4a1g_A Mitotic checkpoint seri 58.6 42 0.0014 23.1 8.1 86 42-133 51-137 (152)
266 3o48_A Mitochondria fission 1 57.8 40 0.0014 22.6 8.9 72 58-132 37-111 (134)
267 2yru_A Steroid receptor RNA ac 57.8 37 0.0013 22.2 6.7 45 81-125 46-90 (118)
268 3bu8_A Telomeric repeat-bindin 57.6 54 0.0018 24.1 7.4 49 42-90 88-143 (235)
269 2es9_A Putative cytoplasmic pr 56.1 21 0.00073 22.0 4.2 82 20-103 13-99 (115)
270 2nsz_A Programmed cell death p 56.0 18 0.0006 24.1 4.3 24 188-211 11-34 (129)
271 3txn_A 26S proteasome regulato 55.4 82 0.0028 25.5 10.1 125 9-138 24-182 (394)
272 3eyy_A Putative iron uptake re 55.4 12 0.00041 25.4 3.5 63 173-236 7-69 (145)
273 3kae_A CDC27, possible protein 55.2 54 0.0018 23.4 8.3 55 70-124 71-142 (242)
274 2p58_C Putative type III secre 54.7 39 0.0013 21.6 5.3 53 191-249 47-99 (116)
275 1k1a_A B-cell lymphoma 3-encod 54.7 47 0.0016 23.8 7.1 25 9-33 11-35 (241)
276 2ijq_A Hypothetical protein; s 53.2 27 0.00094 24.3 5.0 54 194-247 42-103 (161)
277 2w57_A Ferric uptake regulatio 52.8 13 0.00044 25.4 3.4 62 175-236 7-69 (150)
278 3lvg_A Clathrin heavy chain 1; 52.3 0.6 2E-05 39.2 -4.0 161 59-244 81-254 (624)
279 2uwj_G Type III export protein 49.8 36 0.0012 21.7 4.6 52 192-249 47-98 (115)
280 3t5v_B Nuclear mRNA export pro 49.1 36 0.0012 28.2 5.9 64 185-248 177-249 (455)
281 4fhn_B Nucleoporin NUP120; pro 48.9 1.7E+02 0.0059 27.3 11.4 59 186-244 901-963 (1139)
282 1mzb_A Ferric uptake regulatio 48.8 22 0.00075 23.7 4.0 62 175-236 8-70 (136)
283 2nsz_A Programmed cell death p 48.6 28 0.00097 23.1 4.4 67 63-131 9-77 (129)
284 2b7e_A PRE-mRNA processing pro 48.2 26 0.00089 19.7 3.5 34 200-233 2-36 (59)
285 2yru_A Steroid receptor RNA ac 48.2 35 0.0012 22.3 4.7 45 46-90 46-90 (118)
286 4aez_C MAD3, mitotic spindle c 47.2 83 0.0028 23.2 7.9 87 42-134 100-187 (223)
287 2o03_A Probable zinc uptake re 45.7 17 0.00057 24.1 3.0 49 188-236 14-62 (131)
288 3mwm_A ZUR, putative metal upt 45.5 16 0.00054 24.6 2.8 50 187-236 16-65 (139)
289 1ug3_A EIF4GI, eukaryotic prot 45.3 41 0.0014 26.5 5.6 65 63-129 13-78 (339)
290 3ezq_B Protein FADD; apoptosis 45.0 60 0.0021 21.3 5.5 45 201-247 47-91 (122)
291 1mzb_A Ferric uptake regulatio 43.9 68 0.0023 21.2 7.0 58 86-150 8-67 (136)
292 2ion_A PDCD4, programmed cell 43.8 19 0.00064 24.8 3.0 22 189-210 14-35 (152)
293 2ko4_A Mediator of RNA polymer 41.8 27 0.00093 20.9 3.0 32 91-122 31-62 (81)
294 2dod_A Transcription elongatio 41.1 45 0.0015 20.2 4.1 31 42-73 16-47 (82)
295 2fe3_A Peroxide operon regulat 40.8 80 0.0027 21.2 7.9 39 86-125 12-50 (145)
296 2ion_A PDCD4, programmed cell 40.7 43 0.0015 23.0 4.4 67 63-131 11-79 (152)
297 3twr_A Tankyrase-2; ankyrin re 40.6 59 0.002 21.7 5.4 21 9-29 10-30 (165)
298 3eyy_A Putative iron uptake re 39.6 84 0.0029 21.1 6.4 39 85-125 8-46 (145)
299 2fu4_A Ferric uptake regulatio 39.3 58 0.002 19.1 7.1 61 50-111 6-67 (83)
300 2xig_A Ferric uptake regulatio 38.5 90 0.0031 21.1 7.5 39 86-125 17-55 (150)
301 3txn_A 26S proteasome regulato 38.5 1.6E+02 0.0053 23.8 12.4 58 189-246 104-166 (394)
302 2w57_A Ferric uptake regulatio 38.4 90 0.0031 21.1 7.1 38 87-125 8-46 (150)
303 3t5v_B Nuclear mRNA export pro 38.1 1.1E+02 0.0037 25.3 7.2 82 42-123 142-247 (455)
304 3c1d_A Protein ORAA, regulator 37.5 72 0.0025 21.9 5.3 53 40-94 44-96 (159)
305 3eiq_C Programmed cell death p 37.3 1.6E+02 0.0053 23.5 11.5 64 186-250 219-284 (358)
306 3r88_A Anthranilate phosphorib 36.1 89 0.0031 25.1 6.2 67 182-249 21-89 (377)
307 1wgl_A TOLL-interacting protei 35.8 49 0.0017 18.5 3.4 24 72-95 34-57 (59)
308 3s6n_M SurviVal motor neuron p 35.6 43 0.0015 16.5 3.1 21 223-249 12-32 (37)
309 3c1d_A Protein ORAA, regulator 34.4 94 0.0032 21.3 5.5 54 76-132 45-98 (159)
310 3rjo_A Endoplasmic reticulum a 32.7 1.9E+02 0.0067 23.3 12.6 44 89-132 185-239 (419)
311 4b4t_S RPN3, 26S proteasome re 32.4 1.2E+02 0.0041 25.6 6.6 60 185-247 232-298 (523)
312 4fhn_B Nucleoporin NUP120; pro 31.4 3.3E+02 0.011 25.5 14.5 64 62-125 900-967 (1139)
313 4ets_A Ferric uptake regulatio 29.5 1.4E+02 0.0047 20.5 6.6 38 86-124 23-60 (162)
314 2bn5_A PSI; nuclear protein, s 29.4 54 0.0019 15.8 2.9 21 191-211 9-29 (33)
315 2keb_A DNA polymerase subunit 29.4 1.1E+02 0.0037 19.3 6.6 32 44-75 27-58 (101)
316 1fad_A Protein (FADD protein); 29.3 60 0.0021 20.1 3.5 44 200-245 54-97 (99)
317 2d2s_A Exocyst complex compone 28.5 1.8E+02 0.0061 21.5 8.8 24 10-33 24-47 (235)
318 3mwm_A ZUR, putative metal upt 28.4 92 0.0031 20.7 4.5 22 104-125 21-42 (139)
319 1ug3_A EIF4GI, eukaryotic prot 28.2 1.2E+02 0.0042 23.7 5.8 51 42-93 27-78 (339)
320 2o03_A Probable zinc uptake re 27.6 1.2E+02 0.0042 19.7 5.0 17 108-124 22-38 (131)
321 3f3f_C Nucleoporin NUP85; stru 26.9 36 0.0012 29.0 2.6 22 101-122 521-542 (570)
322 2yqf_A Ankyrin-1; death domain 26.8 1.1E+02 0.0037 19.5 4.4 40 200-241 58-97 (111)
323 1zbp_A Hypothetical protein VP 25.8 2.2E+02 0.0076 21.7 6.7 54 69-123 5-58 (273)
324 3ygs_P Procaspase 9; apoptosis 25.6 1.2E+02 0.0042 18.7 4.6 33 200-236 53-85 (97)
325 3qye_A TBC1 domain family memb 25.3 1.2E+02 0.004 23.6 5.2 83 42-129 165-255 (331)
326 4fjo_A DNA repair protein REV1 25.3 1.3E+02 0.0044 18.7 4.7 30 182-211 31-60 (97)
327 2ve8_A FTSK, DNA translocase F 25.1 1.1E+02 0.0038 18.0 3.9 28 65-93 27-54 (73)
328 3qye_A TBC1 domain family memb 24.8 1.2E+02 0.004 23.6 5.1 128 65-198 153-308 (331)
329 1oai_A Nuclear RNA export fact 24.4 1E+02 0.0034 17.2 4.0 26 71-96 30-56 (59)
330 3hzj_A Rabgap1L, RAB GTPase-ac 24.4 1.3E+02 0.0046 23.0 5.3 47 82-129 175-221 (310)
331 1v3f_A Pleckstrin 2; three-hel 24.4 1.5E+02 0.0052 19.2 5.6 34 217-250 35-71 (120)
332 3dfg_A Xcrecx, regulatory prot 24.2 1.8E+02 0.006 20.0 6.5 51 78-131 49-99 (162)
333 1x87_A Urocanase protein; stru 23.3 52 0.0018 27.5 2.8 44 18-62 212-256 (551)
334 3vu7_H DNA repair protein REV1 23.0 1.2E+02 0.004 20.0 4.0 31 182-212 58-88 (124)
335 3aji_A 26S proteasome non-ATPa 22.6 2E+02 0.007 20.1 7.7 106 9-119 8-126 (231)
336 3l6a_A Eukaryotic translation 22.4 2.8E+02 0.0097 22.0 6.9 63 9-71 17-93 (364)
337 3bge_A Predicted ATPase; struc 22.0 65 0.0022 23.2 2.8 45 189-233 9-56 (201)
338 2fkn_A Urocanate hydratase; ro 21.9 53 0.0018 27.4 2.5 20 42-61 237-256 (552)
339 2rg8_A Programmed cell death p 21.7 2E+02 0.007 19.8 6.1 27 63-89 12-38 (165)
340 2i2x_B MTAC, methyltransferase 21.2 62 0.0021 24.3 2.7 39 72-110 47-85 (258)
341 1ixm_A SPO0B, protein (sporula 21.2 89 0.0031 22.3 3.4 23 189-211 37-59 (192)
342 2jp7_A MRNA export factor MEX6 21.1 52 0.0018 18.3 1.7 13 74-86 32-44 (57)
343 2dzn_A Probable 26S proteasome 20.6 2.1E+02 0.0071 20.0 5.6 105 10-119 5-127 (228)
344 3bu8_A Telomeric repeat-bindin 20.6 2.6E+02 0.0089 20.6 11.5 25 189-213 119-143 (235)
345 3eiq_C Programmed cell death p 20.5 1.2E+02 0.0041 24.2 4.3 67 63-131 219-287 (358)
346 1ixm_A SPO0B, protein (sporula 20.3 98 0.0034 22.1 3.5 10 165-174 44-53 (192)
347 1uwk_A Urocanate hydratase; hy 20.3 52 0.0018 27.5 2.2 20 42-61 241-260 (557)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.7e-33 Score=237.20 Aligned_cols=171 Identities=9% Similarity=0.011 Sum_probs=109.6
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh--hccccccc--------------------hhHHHHHHHHHHHCCCCccHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG--------------------VGKAEMVVQEMKDMGFARRTIYCYI 66 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~--------------------~~~A~~~~~~m~~~~~~p~~~~y~~ 66 (250)
.+|++|+|.|++++|.++|++|... .|+..+|+ +++|.++|++|.+.|+.||..|||+
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4567777777777777777766655 34444444 2344444444444444444444444
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHH
Q 037164 67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTML 146 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~ 146 (250)
||.+|++.|++++|.++|++|++.|+.||..|||+||.+|++.|++++|.++|++|... |+.
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~----------------- 172 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVV----------------- 172 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCC-----------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCC-----------------
Confidence 44444444444444444444444444444444444444444444444444444444444 443
Q ss_pred HHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHH
Q 037164 147 KKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI 226 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 226 (250)
||..||++||.+|++.|++++|.++|++|++.|..|+..||++|+
T Consensus 173 -----------------------------------Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 173 -----------------------------------PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred -----------------------------------CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 556778999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 037164 227 DAHCKN 232 (250)
Q Consensus 227 ~~~~~~ 232 (250)
..|+..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 998864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-32 Score=231.30 Aligned_cols=179 Identities=10% Similarity=0.010 Sum_probs=124.3
Q ss_pred HHHHHHHHHHCCCCccH-HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC---------hhH
Q 037164 45 AEMVVQEMKDMGFARRT-IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD---------IHG 114 (250)
Q Consensus 45 A~~~~~~m~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~---------~~~ 114 (250)
++.+.+++++.+..+.+ ..++.+|.+|++.|++++|.++|++|++.|+.||..|||+||++|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44555566555544332 34666677777777777777777777777777777777777777666554 455
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChh
Q 037164 115 MDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK 185 (250)
Q Consensus 115 a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (250)
|.++|++|... |+.||..||+++ +++|.++|++|.... ..|+..
T Consensus 89 A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--------------------------~~Pd~~ 141 (501)
T 4g26_A 89 GFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG--------------------------IQPRLR 141 (501)
T ss_dssp HHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------CCCCHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------------CCCccc
Confidence 66777777666 777777777666 344444444443111 126778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
|||++|.+|++.|++++|.++|++|...|+.||..||++||.+|++.|++++|.+++++|.+.|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999998774
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=179.12 Aligned_cols=126 Identities=7% Similarity=0.023 Sum_probs=109.8
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEME 88 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 88 (250)
++|++|||.|++++|.++|.+|... .+.|+.||++|||+||.+||+.|++++|.++|++|+
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m-------------------~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQ-------------------RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHS-------------------HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-------------------hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8999999999999999999888742 344689999999999999999999999999999999
Q ss_pred hcCCCCCchhHhhhHHHHHhcCCh-hHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHHHHHHhhhh
Q 037164 89 EKSINGDQFTLGIRPSAYAAASDI-HGMDKIINMTESNPQMVLDFNLLAVL-----LYMAMTMLKKSEGLIA 154 (250)
Q Consensus 89 ~~gi~p~~~ty~~li~~~~~~~~~-~~a~~~~~~m~~~~g~~~~~~~~~~l-----~~~a~~~~~~~~~~~~ 154 (250)
+.|+.||.+|||+||+++|+.|+. ++|.++|++|... |+.||..||+.+ -+..++..+++.....
T Consensus 193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999999999999999999985 7899999999999 999999999988 3444444444443333
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=9.3e-23 Score=179.55 Aligned_cols=130 Identities=11% Similarity=0.073 Sum_probs=113.8
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh---cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEE---KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN 133 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~ 133 (250)
+..-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|... |+.||
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PD-- 199 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPD-- 199 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCC--
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCc--
Confidence 344557999999999999999999999998864 589999999999999999999999999999999998 88766
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 037164 134 LLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDV-KGAEKTLRNWTS 212 (250)
Q Consensus 134 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 212 (250)
..|||++|+++|+.|+. ++|.++|++|.+
T Consensus 200 --------------------------------------------------vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 200 --------------------------------------------------LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45578899999999984 789999999999
Q ss_pred CCCCCCCcchHHHHHHHHhcCChhHHH
Q 037164 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 213 ~~~~~~~~~~~~li~~~~~~g~~~~a~ 239 (250)
.|+.||..+|++++.++.+.+-++.+.
T Consensus 230 kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 230 EGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred cCCCCChhhcccccChhhHHHHHHHHH
Confidence 999999999999998877765444443
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=6e-20 Score=158.64 Aligned_cols=231 Identities=8% Similarity=0.002 Sum_probs=133.7
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhc-cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+..+|.+.|++++|.++|+++....| +..+|. .++|..+|+++.+. .+.+..+|+.++.+|.+.|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhcc
Confidence 445556666666666666666554422 222332 56666666666543 24456666666667777777
Q ss_pred hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHH
Q 037164 77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLK 147 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~ 147 (250)
+++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++... .+.+..+|..+ +++|.++|+
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776665531 224556666777777777777777777666543 22234444444 666666666
Q ss_pred HHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc-------C-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037164 148 KSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT-------R-KVF--NKGYMTMMGLLLKLDDVKGAEKTLRNW 210 (250)
Q Consensus 148 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 210 (250)
++.... |... . +|. ..++.+++.+.++.. . .|+ ..+|..+..+|.+.|++++|.++|+++
T Consensus 466 ~~~~~~-~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 466 SSYALF-QYDP-L-LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHC-CCCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhC-CCCh-H-HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 665332 2221 1 332 445555555555443 1 233 456667777777777777777777766
Q ss_pred HhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 211 TSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 211 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
...+ +.+..+|..+..+|.+.|++++|.++|+++.+
T Consensus 543 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 543 LLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6443 33566677777777777777777777766654
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=4.9e-19 Score=152.90 Aligned_cols=233 Identities=9% Similarity=-0.020 Sum_probs=195.1
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
.++++|++.|++++|.++|+.+....++..++. .++|.++|+++.+.+ +.+..+|+.++.+|.+.|++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 458899999999999999999887655666665 899999999998865 45789999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK 148 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~ 148 (250)
++|.++++++.+. .+.+..+|+.+..+|.+.|++++|.++|+++... .+.+..+|..+ .++|.++|++
T Consensus 356 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 356 NKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999865 3457889999999999999999999999998753 23345566666 8999999999
Q ss_pred HHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 037164 149 SEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK----N 214 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 214 (250)
+......+.. +|. ..++.+++.+.++.. .+.+..+|+.++..|.+.|++++|.++|+++... +
T Consensus 433 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 433 AARLFQGTHL---PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHTTTTCSH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCccchH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 9854422222 443 677777777777665 3456789999999999999999999999999865 6
Q ss_pred CCCC--CcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 215 LPYD--FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 215 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..|+ ..+|..+..+|.+.|++++|..+++++.+.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6777 679999999999999999999999998764
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=3.2e-14 Score=116.55 Aligned_cols=198 Identities=10% Similarity=-0.055 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|.++|+++.+.. +.+..+|+.+..+|.+.|++++|...|+++.+.+ +.+...|..+-..+...|++++|...+++
T Consensus 151 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 151 LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555554431 2234555555555555555555555555555431 11234455555555556666666666555
Q ss_pred HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCC
Q 037164 122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKV 182 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~ 182 (250)
.... .+.+..++..+ +++|.+.++++.... |.... +|. ..++.+++.+.++.. .+.
T Consensus 229 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 229 ALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD--AYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH--HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 5432 11123333333 677777777766432 22221 222 555566666655543 334
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+..+|+.+...+.+.|++++|...++++... .+.+..++..+...|.+.|++++|...++++.+
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5577888888888888888888888887742 344566788888888888888888888888765
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=8e-14 Score=114.17 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=120.3
Q ss_pred hHhhhccChhHHHHHHHHhhhhhc-cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLR-QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
..+.+.|++++|..+++......| +...|. .++|...|+++.+.. +.+..+|..+..+|.+.|++++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 344555666666666655544422 222332 556666666665532 2234455666666666666666
Q ss_pred HHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHH
Q 037164 80 IDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKS 149 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~ 149 (250)
|.+.|+++.+. .|+. ..+..+-..+...|++++|.++|+++... .+.+..+|..+ +++|...|+++
T Consensus 120 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 120 AVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666555443 2332 33444445555555555555555555432 11122333322 44444444444
Q ss_pred Hhhh---------------------------------hccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhh
Q 037164 150 EGLI---------------------------------ATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKG 186 (250)
Q Consensus 150 ~~~~---------------------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~ 186 (250)
.... .|... . ++. ..++.+++.+.++.. .+.+..+
T Consensus 196 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-V-VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 3211 11111 0 111 445555555555443 2233466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|..+...+.+.|++++|...|+++... .+.+..+++.+...|.+.|++++|...++++.+
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777777777777643 345666777777777777777777777777654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.58 E-value=2.3e-13 Score=113.26 Aligned_cols=234 Identities=7% Similarity=-0.045 Sum_probs=130.2
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+...+.+.|++++|.++|+.+....|+ ...|. .++|...|+++.+.+ +.+..++..+..+|.+.|+
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 3444556666666666666665554222 22222 455555555554432 2334455555555555555
Q ss_pred hhhHHHHHHHHHhcC------------------------------------------------CCCCchhHhhhHHHHHh
Q 037164 77 REKIDALMLEMEEKS------------------------------------------------INGDQFTLGIRPSAYAA 108 (250)
Q Consensus 77 ~~~a~~~~~~m~~~g------------------------------------------------i~p~~~ty~~li~~~~~ 108 (250)
+++|.++|+++.+.+ -+.+..++..+..+|.+
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 555555555444321 12234455555666666
Q ss_pred cCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCch-----------------hh
Q 037164 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSS-----------------NA 162 (250)
Q Consensus 109 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~-----------------~~ 162 (250)
.|++++|.++|+++... .+.+..++..+ .++|...|+++.... |..... ..
T Consensus 190 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp TTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665432 11223333333 667777777665322 222100 01
Q ss_pred hcchhHHHHHHHHHhccCC--CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCh
Q 037164 163 FELKDQLYRIWKHYGQTRK--VF-----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLL 235 (250)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 235 (250)
+...++.+++.+.++.... |+ ...|..+...+.+.|++++|...++++... .+.+..+|..+..+|...|++
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCH
Confidence 1145555566555554422 33 236677778888888888888888887643 234567788888888888888
Q ss_pred hHHHHHHHHHHh
Q 037164 236 EKAQSLINHAET 247 (250)
Q Consensus 236 ~~a~~~~~~m~~ 247 (250)
++|...++++.+
T Consensus 346 ~~A~~~~~~al~ 357 (450)
T 2y4t_A 346 DEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.57 E-value=5.5e-13 Score=111.00 Aligned_cols=197 Identities=9% Similarity=-0.029 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|..+|+++.+. .+.+..+|..+..+|.+.|++++|.+.|+.+.+.+ +.+..+|..+..+|.+.|++++|.+.|++
T Consensus 42 ~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 42 LADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999876 35678999999999999999999999999988864 33578899999999999999999999999
Q ss_pred HhhCCCCCccH----HHHHHH---------------------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHH
Q 037164 122 TESNPQMVLDF----NLLAVL---------------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQL 169 (250)
Q Consensus 122 m~~~~g~~~~~----~~~~~l---------------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 169 (250)
+... .|+. ..+..+ +++|...|+++.... |.... .+. ..++.
T Consensus 120 ~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 120 VLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE--LRELRAECFIKEGEP 193 (450)
T ss_dssp HHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH--HHHHHHHHHHHTTCG
T ss_pred HHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH--HHHHHHHHHHHCCCH
Confidence 9754 2332 222111 788888888876432 22221 222 33333
Q ss_pred HHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHH------------HHHHHhcCC
Q 037164 170 YRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSL------------IDAHCKNGL 234 (250)
Q Consensus 170 ~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~ 234 (250)
+++.+.++.. .+.+..+|..+...|.+.|++++|...|+++... .+.+...+..+ ...|.+.|+
T Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (450)
T 2y4t_A 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272 (450)
T ss_dssp GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333332 2234466666666666666666666666666532 11122233333 555666666
Q ss_pred hhHHHHHHHHHHh
Q 037164 235 LEKAQSLINHAET 247 (250)
Q Consensus 235 ~~~a~~~~~~m~~ 247 (250)
+++|..+|+++.+
T Consensus 273 ~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 273 YTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666543
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.9e-12 Score=103.02 Aligned_cols=231 Identities=8% Similarity=-0.048 Sum_probs=175.1
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG- 75 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g- 75 (250)
.....+...|++++|.++|+.+....|.. ..+. .++|..+++++.+.. +.+..+|..+...|...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 45567778899999999999988774433 2222 899999999998863 456789999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHH
Q 037164 76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTML 146 (250)
Q Consensus 76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~ 146 (250)
++++|.+.|+...+.. +.+...|..+...+...|++++|.+.+++.... . +.+...+..+ .++|.+.+
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-M-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-c-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999887653 335778999999999999999999999998654 1 1112222222 88999999
Q ss_pred HHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC------------CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164 147 KKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR------------KVFNKGYMTMMGLLLKLDDVKGAEKTL 207 (250)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~ 207 (250)
++..... |... . .+. ..++.+++.+.++... +.....|..+...+.+.|++++|...+
T Consensus 183 ~~al~~~-~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 183 SQALSIA-PEDP-F-VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHTTC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-CCCh-H-HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9887544 2222 1 222 5555555555553321 223468889999999999999999999
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 208 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
++..... +.+..++..+...|.+.|++++|...+++..+
T Consensus 260 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 260 RQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9988543 44788899999999999999999999988764
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.44 E-value=7.1e-12 Score=101.44 Aligned_cols=228 Identities=7% Similarity=-0.062 Sum_probs=129.1
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
..+.+.|++++|..+|+.+....|+ ...|. .++|...|++..+.+ +.+..++..+..+|...|++++
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4566677777777777776655332 22222 667777777776653 3456677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCchhHhh---------------hHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------
Q 037164 80 IDALMLEMEEKSINGDQFTLGI---------------RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------ 138 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~---------------li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------ 138 (250)
|.+.++.+.... +.+...+.. .+..+...|++++|.+.++++.....-.++..++..+
T Consensus 151 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 151 ACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 777777666542 112222221 2333336777777777777665431111134444333
Q ss_pred ---HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164 139 ---LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEK 205 (250)
Q Consensus 139 ---~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 205 (250)
+++|...+++..... |... . .+. ..++.+++.+.++.. .+.+...+..+...|.+.|++++|..
T Consensus 230 ~g~~~~A~~~~~~al~~~-~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVR-PNDY-L-LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 667777776665432 2221 1 222 445555555555443 22334666777777777777777777
Q ss_pred HHHHHHhCCCCC----------CCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 206 TLRNWTSKNLPY----------DFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 206 ~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
.|++........ ...+|..+..+|...|++++|..++.+
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 777765321111 145677777777777777777766653
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.44 E-value=4.6e-11 Score=95.88 Aligned_cols=232 Identities=7% Similarity=-0.037 Sum_probs=151.2
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCC---ccHHHHHHH--------
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFA---RRTIYCYIM-------- 67 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~---p~~~~y~~l-------- 67 (250)
-..+.+.|++++|...|+......|+ ...|. .++|...|++..+.. + .+...+..+
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHH
Confidence 34556667777777777766655332 22222 677777777777652 2 234444444
Q ss_pred ----HHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----
Q 037164 68 ----MILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----- 138 (250)
Q Consensus 68 ----i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----- 138 (250)
...+...|++++|.+++++..+. .+.+...+..+..++...|++++|.+.+++.... .+.+...+..+
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 46677777888888887776654 2335677777788888888888888888887654 22334444444
Q ss_pred ----HHHHHHHHHHHHhhhhccCCch-----------------hhhcchhHHHHHHHHHhccCC--CCh-----hhHHHH
Q 037164 139 ----LYMAMTMLKKSEGLIATKRNSS-----------------NAFELKDQLYRIWKHYGQTRK--VFN-----KGYMTM 190 (250)
Q Consensus 139 ----~~~a~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~l 190 (250)
.++|...+++..... |..... ..+...++.+++.+.++.... |+. ..+..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 777777777776432 222100 012255566666666655422 332 224456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
...+.+.|++++|...+++.... .+.+..++..+...|...|++++|...|+++.+.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 68889999999999999998754 3446788899999999999999999999988753
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.42 E-value=5.6e-12 Score=100.16 Aligned_cols=228 Identities=9% Similarity=-0.002 Sum_probs=163.6
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
.-..+.+.|++++|..+|+.+....|+ ...+. .++|...|++..+.. +.+..++..+..+|...|++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCH
Confidence 344677899999999999998776443 23333 899999999998863 45778899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCc-hhHhhh--------------HH-HHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---
Q 037164 78 EKIDALMLEMEEKSINGDQ-FTLGIR--------------PS-AYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--- 138 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~-~ty~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--- 138 (250)
++|.+.++...+. .|+. ..+..+ .. .+...|++++|.++++++... .+.+...+..+
T Consensus 106 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 106 NAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 9999999988765 2332 333333 22 377888999999999998654 22244444444
Q ss_pred ------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHH
Q 037164 139 ------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKG 202 (250)
Q Consensus 139 ------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 202 (250)
.++|.+.+++..... |... . .+. ..++.+++.+.++.. .+.+...|..+...+.+.|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDA-Q-LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 888888888877443 2222 1 222 566666666666554 33445788888999999999999
Q ss_pred HHHHHHHHHhCCCCC-----------CCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 203 AEKTLRNWTSKNLPY-----------DFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 203 A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
|...+++........ +..+|..+..+|.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999887543221 4678888999999999999999887654
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.42 E-value=6.6e-12 Score=101.81 Aligned_cols=227 Identities=9% Similarity=-0.037 Sum_probs=129.3
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
-..+.+.|++++|.++|+.+....|+ ...|. .++|...|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHH
Confidence 44667778888888888877666332 23333 677777777776653 345677777777777788888
Q ss_pred hHHHHHHHHHhcCCCCC-----------chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------
Q 037164 79 KIDALMLEMEEKSINGD-----------QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--------- 138 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~-----------~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--------- 138 (250)
+|.++++++.+.. |+ ..++..+...+.+.|++++|.++++++.....-.++..++..+
T Consensus 151 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 151 DACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 8877777766531 21 1223344667777777777777777775431111134444444
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLR 208 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 208 (250)
+++|.+.+++..... |... . ++. ..++.+++.+.++.. .+.+...|..+...|.+.|++++|...|+
T Consensus 229 ~~~A~~~~~~al~~~-p~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 229 FNRAIDAFNAALTVR-PEDY-S-LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp HHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 667777776665432 2221 1 222 455555555555443 22334666666677777777777777777
Q ss_pred HHHhCCC---C--------CCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 209 NWTSKNL---P--------YDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 209 ~m~~~~~---~--------~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
+...... . .+..+|..|..++...|+.+.+..+..
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6553211 0 135566777777777777776666544
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.3e-11 Score=102.63 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=59.9
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
..+.+.|++++|.+.|+++....|+...|. .++|...|+++.+.+ +.+..+|..+..+|.+.|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 356778888888888888877766665555 788888888887763 45567888888888888888888
Q ss_pred HHHHHHHHhcC
Q 037164 81 DALMLEMEEKS 91 (250)
Q Consensus 81 ~~~~~~m~~~g 91 (250)
...|+.+...+
T Consensus 93 ~~~~~~~~~~~ 103 (514)
T 2gw1_A 93 MFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhcC
Confidence 88888776543
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.2e-11 Score=104.30 Aligned_cols=224 Identities=9% Similarity=0.033 Sum_probs=171.9
Q ss_pred hccChhHHHHHHHHhhh-----h--hc--------cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHH
Q 037164 16 EVHGVEQAEIYFDNISK-----L--LR--------QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMI 69 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~-----~--~~--------~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~ 69 (250)
+.|++++|..+|+.+.. . .| +...+. .++|..+|++..+.+ |+..+|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 48999999999998876 2 11 122222 899999999998864 44889999999
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HH
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LY 140 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~ 140 (250)
+|...|++++|.+.++...+.. +.+..+|..+...|...|++++|...+++.... . +.+...+..+ .+
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-D-PENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT-C-SSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C-hhhHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987752 346788999999999999999999999998764 1 2223333333 89
Q ss_pred HHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC-------hhhHHHHHHHHHh---cCCHH
Q 037164 141 MAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF-------NKGYMTMMGLLLK---LDDVK 201 (250)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~-------~~~~~~li~~~~~---~g~~~ 201 (250)
+|...++++.... |.... .+. ..++.+++...++.... |+ ...|..+...+.+ .|+++
T Consensus 356 ~A~~~~~~~~~~~-~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 356 DCETLFSEAKRKF-PEAPE--VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHS-TTCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHc-ccCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 9999999987543 33321 332 66666666666655422 21 2388899999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+|...+++..... +.+..++..+...|.+.|++++|...|++..+.
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999988543 446778899999999999999999999988764
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.39 E-value=4.4e-11 Score=96.74 Aligned_cols=230 Identities=9% Similarity=-0.090 Sum_probs=163.6
Q ss_pred HhhhccChhHHHH-HHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164 13 LIFEVHGVEQAEI-YFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG 75 (250)
Q Consensus 13 ~~~k~~~~~~a~~-~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g 75 (250)
.+.-.|++++|.. .|++.....|+. ..+. .++|...|+++.+.. +.+..+|..+..+|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888887 777554432221 1122 899999999999874 567889999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH--------------------HHH
Q 037164 76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF--------------------NLL 135 (250)
Q Consensus 76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--------------------~~~ 135 (250)
++++|.+.++...+.+ +.+..+|..+..+|...|++++|.+.++++.....-.+.. ..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999988763 3477889999999999999999999999986541111111 111
Q ss_pred HHH--HHHHHHHHHHHHhhhhcc-CCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHH
Q 037164 136 AVL--LYMAMTMLKKSEGLIATK-RNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKG 202 (250)
Q Consensus 136 ~~l--~~~a~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 202 (250)
... .++|...+.++....... .. . ++. ..++.+++...++.. .+.+...|..+...+.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDP-D-VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 112 888999998887543221 11 1 332 667777777777654 33455889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 203 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|...|++.... .+.+..++..+...|.+.|++++|...++++.+
T Consensus 270 A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 270 AVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998854 344677899999999999999999999998875
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.2e-11 Score=92.45 Aligned_cols=198 Identities=15% Similarity=0.076 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--CCCC----chhHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS--INGD----QFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--i~p~----~~ty~~li~~~~~~~~~~~a 115 (250)
.++|..+|++..+.. ++..+|..+..+|...|++++|.+.++...+.. ..|+ ..+|..+..+|.+.|++++|
T Consensus 21 ~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 98 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98 (258)
T ss_dssp HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHH
Confidence 566666666666655 778899999999999999999999999876642 1122 57888899999999999999
Q ss_pred HHHHHHHhhCCCCCccHHHHHHH--HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCC
Q 037164 116 DKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVF 183 (250)
Q Consensus 116 ~~~~~~m~~~~g~~~~~~~~~~l--~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~ 183 (250)
.+.+++.... .|+..++..+ .++|...+++.......... .+. ..++.+++.+.++.. .+.+
T Consensus 99 ~~~~~~a~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 99 IEYYQKSLTE---HRTADILTKLRNAEKELKKAEAEAYVNPEKAE---EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhc---CchhHHHHHHhHHHHHHHHHHHHHHcCcchHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 9999988753 3555666666 88888888887643211111 222 566666666666554 3345
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
...|..+...+.+.|++++|...+++..... +.+..+|..+...|.+.|++++|...+++..+.
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6888999999999999999999999988643 445788999999999999999999999988753
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=3.6e-11 Score=97.47 Aligned_cols=197 Identities=10% Similarity=-0.052 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|..+|+++.+.. +.+..+|..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.+++
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 81 LPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 899999999998863 5678999999999999999999999999988753 33578899999999999999999999999
Q ss_pred HhhCCCCCccH-----------HHHHH---H------HHHHHHHHHHHHhhhhcc--CCchhhhc-------chhHHHHH
Q 037164 122 TESNPQMVLDF-----------NLLAV---L------LYMAMTMLKKSEGLIATK--RNSSNAFE-------LKDQLYRI 172 (250)
Q Consensus 122 m~~~~g~~~~~-----------~~~~~---l------~~~a~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~ 172 (250)
+... .|+. .++.. + +++|...++++.... |. .. . .+. ..++.+++
T Consensus 159 al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~-~-~~~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 159 WIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDP-D-LQTGLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCH-H-HHHHHHHHHHHHTCHHHH
T ss_pred HHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCH-H-HHHHHHHHHHHCCCHHHH
Confidence 8653 1221 01111 1 899999999988543 33 22 1 232 66777777
Q ss_pred HHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 173 WKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 173 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+.++.. .+.+..+|+.+...|.+.|++++|...|++.... .+.+..++..+...|.+.|++++|...|+++.+
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777664 3345688999999999999999999999998854 344578899999999999999999999999875
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=1.4e-10 Score=88.96 Aligned_cols=182 Identities=7% Similarity=-0.080 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+.. +.+..++..+..+|...|++++|.+++++..+.. +.+...|..+...|...|++++|.+++++
T Consensus 53 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 53 TEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp TGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 677777777776653 4567889999999999999999999999887763 33677888899999999999999999999
Q ss_pred HhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhc
Q 037164 122 TESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKL 197 (250)
Q Consensus 122 m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~ 197 (250)
+... +..|+ ...+..+ +. .|...++.+++.+.++.. .+.+...+..+...+...
T Consensus 131 ~~~~-~~~~~~~~~~~~l---a~------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 131 ASQD-TLYPERSRVFENL---GL------------------VSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HTTC-TTCTTHHHHHHHH---HH------------------HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHhC-ccCcccHHHHHHH---HH------------------HHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 8763 44453 3333222 00 111222222333332222 223456788889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
|+.++|...+++.... .+.+...+..+...|...|++++|.++++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999998743 4456777888999999999999999999998764
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.35 E-value=4e-10 Score=90.37 Aligned_cols=228 Identities=10% Similarity=-0.031 Sum_probs=166.6
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
..+.+.|++++|...|+.+....|+ +..+. .++|...|++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 4677899999999999998877444 33333 899999999998863 4467899999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CchhHhhh------------HHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----
Q 037164 80 IDALMLEMEEKSING----DQFTLGIR------------PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----- 138 (250)
Q Consensus 80 a~~~~~~m~~~gi~p----~~~ty~~l------------i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----- 138 (250)
|...++...+. .| +...+..+ ...+...|++++|.++++++... .+.+...+..+
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 99999988764 45 44445444 58899999999999999998654 22334444444
Q ss_pred ----HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC-hhhHH------------HHHH
Q 037164 139 ----LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF-NKGYM------------TMMG 192 (250)
Q Consensus 139 ----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~-~~~~~------------~li~ 192 (250)
.++|...+++..... |.... .+. ..++.+++.+.++.... |+ ...+. .+..
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNTE--AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 889999999887543 33321 332 66666677666655422 32 23333 2256
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 193 LLLKLDDVKGAEKTLRNWTSKNLPYDF----GLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+.+.|++++|...+++....... +. ..+..+...|...|++++|...+++..+.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 789999999999999998864322 22 23555778999999999999999998763
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.33 E-value=5.9e-10 Score=88.50 Aligned_cols=202 Identities=8% Similarity=-0.102 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC-ChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS-DIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~-~~~~a~~~~~ 120 (250)
.++|.++|+++.+.. +.+..++..+..++.+.|++++|..+++++.+. -+.+...|..+...+...| ++++|.+.++
T Consensus 38 ~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 38 FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL-YPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 899999999998763 456677888889999999999999999998875 2336788999999999999 9999999999
Q ss_pred HHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccC---CCC
Q 037164 121 MTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTR---KVF 183 (250)
Q Consensus 121 ~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~ 183 (250)
+.... . +.+...+..+ .++|.+.+++.......... . ..|...++.+++.+.++... +.+
T Consensus 116 ~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 116 KATTL-E-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL-PMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp HHHTT-C-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHh-C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 98754 1 2223333333 88999999988754422222 1 01116666777777766543 345
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN--------LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
...+..+...+.+.|++++|...+++..... .+.+..++..+...|...|++++|...+++..+.
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 5888999999999999999999999987532 1445678999999999999999999999998764
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.33 E-value=2.2e-10 Score=90.48 Aligned_cols=222 Identities=11% Similarity=-0.018 Sum_probs=151.0
Q ss_pred hhhccChhHHHHHHHHhhhhhcccc---------ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCL---------FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~---------~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
..-.|+++.|...++.+....|... +|- .+.|...++. . -+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3446888888888776544322221 111 5555554433 2 456777888888888888888888
Q ss_pred HHHHHHHHhcCCCCCchhH-hhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHH
Q 037164 81 DALMLEMEEKSINGDQFTL-GIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE 150 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty-~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~ 150 (250)
.+.++++...++.|+...+ ..+-..+...|++++|.+++++ +.+...+..+ .++|.+.|+++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888777766655444 4444888888888888888876 1233333333 788888888877
Q ss_pred hhhhccCCch---hhhc----chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164 151 GLIATKRNSS---NAFE----LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220 (250)
Q Consensus 151 ~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 220 (250)
... |+.... ..|. ..+..+++...+++. .+.+...|+.+-.++.+.|++++|+..|++.... .+-+..
T Consensus 158 ~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~ 235 (291)
T 3mkr_A 158 DQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPE 235 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred hhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH
Confidence 442 332100 0111 336677777776554 3456688999999999999999999999998754 344677
Q ss_pred chHHHHHHHHhcCChhH-HHHHHHHHHhc
Q 037164 221 LPSSLIDAHCKNGLLEK-AQSLINHAETK 248 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 248 (250)
++..++..+...|+.++ +.++++++.+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 89999999999999976 67898887753
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.31 E-value=7.1e-13 Score=108.88 Aligned_cols=203 Identities=10% Similarity=0.035 Sum_probs=80.4
Q ss_pred hhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHH
Q 037164 14 IFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDA 82 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 82 (250)
+-++|++++|.+++++++.. .+|. +++|++.|.+ .+|..+|..++.++.+.|++++|.+
T Consensus 13 l~~~~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44678899999999998543 2444 8888888865 2677899999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhh
Q 037164 83 LMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLI 153 (250)
Q Consensus 83 ~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~ 153 (250)
+++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+ +++|...|..+....
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~ 152 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 152 (449)
T ss_dssp ----------------------------CHHHHTTTTTC--------C----------------CTTTHHHHHHHTTCHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHH
Confidence 77765553 56688899999999999999998887741 455566666 788888888763111
Q ss_pred hccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC
Q 037164 154 ATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG 233 (250)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 233 (250)
.. . . ++.+.++.+.+.+.++.. .++.+|..++.+|...|+++.|......+. . ++.-...++..|.+.|
T Consensus 153 ~L-A--~-~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RL-A--S-TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELINYYQDRG 221 (449)
T ss_dssp HH-H--H-HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHHHHHHHTT
T ss_pred HH-H--H-HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHHHHHHHCC
Confidence 00 0 1 344888888888888877 378999999999999999999965554322 2 3333557889999999
Q ss_pred ChhHHHHHHHHHHh
Q 037164 234 LLEKAQSLINHAET 247 (250)
Q Consensus 234 ~~~~a~~~~~~m~~ 247 (250)
++++|..+++..+.
T Consensus 222 ~~eEai~lLe~aL~ 235 (449)
T 1b89_A 222 YFEELITMLEAALG 235 (449)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999987653
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=1.8e-09 Score=80.75 Aligned_cols=191 Identities=5% Similarity=-0.099 Sum_probs=119.5
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
-..+.+.|++++|.++|+..... .+.+..++..+..+|...|++++|.+++++..+.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKS-----------------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh-----------------------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 33455566666666666655543 2334567777777777888888888888776664
Q ss_pred CCCCCchhHhhhHHHHHhc-CChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhH
Q 037164 91 SINGDQFTLGIRPSAYAAA-SDIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQ 168 (250)
Q Consensus 91 gi~p~~~ty~~li~~~~~~-~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (250)
. +.+..+|..+...+... |++++|.+.++++... +..|+ ...+..+ +. .|...++
T Consensus 72 ~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l---~~------------------~~~~~~~ 128 (225)
T 2vq2_A 72 K-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNK---GI------------------CSAKQGQ 128 (225)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHH---HH------------------HHHHTTC
T ss_pred C-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHH---HH------------------HHHHcCC
Confidence 2 23556777777777777 8888888888777653 33333 2222222 00 1111122
Q ss_pred HHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 169 LYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 169 ~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
.+++.+.++.. .+.+...+..+...+.+.|++++|..++++........+...+..+...+...|+.+.|..+++.+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 22222222211 122346677888888999999999999998875432246667778888888899999999988887
Q ss_pred Hh
Q 037164 246 ET 247 (250)
Q Consensus 246 ~~ 247 (250)
.+
T Consensus 209 ~~ 210 (225)
T 2vq2_A 209 QA 210 (225)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 27
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.29 E-value=3.7e-10 Score=95.91 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=143.7
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhc-cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLR-QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
=..+.+.|++++|.+.|+++....| ++..|. .++|.+.|++..+.+ +.+..++..+..+|.+.|+++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 3467788999999999998877744 333443 899999999988764 456788888889999999999
Q ss_pred hHHHHHHHHHhc--------------------------------------------------------------------
Q 037164 79 KIDALMLEMEEK-------------------------------------------------------------------- 90 (250)
Q Consensus 79 ~a~~~~~~m~~~-------------------------------------------------------------------- 90 (250)
+|.+.|+.+...
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 988877533110
Q ss_pred ---------------------------------------CCCCC--------chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 91 ---------------------------------------SINGD--------QFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 91 ---------------------------------------gi~p~--------~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
...|+ ..+|..+-..+...|++++|.+.+++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 11122 1124444455666666666766666664
Q ss_pred hCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCCh
Q 037164 124 SNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFN 184 (250)
Q Consensus 124 ~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~ 184 (250)
.. .|+...+..+ .++|...+.+..... |.... ++. ..++.+++.+.++.. .+.+.
T Consensus 271 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 271 NL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP--TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred hc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 32 2333333333 566666666665332 12211 222 455555555555443 22334
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..|..+...+...|++++|..++++.... .+.+..++..+...|...|++++|...++++.+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777777777788888888888777643 344566777777778888888888887777654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.28 E-value=5.3e-10 Score=88.62 Aligned_cols=200 Identities=8% Similarity=-0.066 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|..+|+++.+.. +.+..++..+..+|.+.|++++|.+.+++..+.. +.+..+|..+...|...|++++|.+.+++
T Consensus 37 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 37 LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 799999999998763 4578899999999999999999999999988762 34678899999999999999999999999
Q ss_pred HhhC-CCCCccHHHH--------------HH--H-----HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHH
Q 037164 122 TESN-PQMVLDFNLL--------------AV--L-----LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRI 172 (250)
Q Consensus 122 m~~~-~g~~~~~~~~--------------~~--l-----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 172 (250)
.... +......... .. . .++|...++++.... |.... .+. ..++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~la~~~~~~~~~~~A 191 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ--LHASLGVLYNLSNNYDSA 191 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH--HHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH--HHHHHHHHHHHhccHHHH
Confidence 8654 1221111111 22 1 788888888887443 22221 222 66667777
Q ss_pred HHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 173 WKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 173 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+.++.. .+.+...|..+...+.+.|++++|...|++..... +.+..++..+...|.+.|++++|...++++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 192 AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7776554 33455888999999999999999999999987543 44677899999999999999999999998865
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.28 E-value=5.7e-10 Score=86.37 Aligned_cols=221 Identities=10% Similarity=-0.085 Sum_probs=155.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhc-----cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLR-----QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN 76 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~-----~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 76 (250)
.+...|++++|.+.|+.+....+ +...|. .++|...|++..+.+ +.+..+|..+..+|.+.|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 34557899999999998876521 222222 899999999998863 4568899999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHHHHHHH
Q 037164 77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMTMLKKSE 150 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~~~~~~ 150 (250)
+++|.+.++...+.. +.+..+|..+..+|.+.|++++|.+.++++.....-.+....+..+ .++|...+.+..
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999988752 3367889999999999999999999999986531111222222222 788888887776
Q ss_pred hhhhccCCchhhhc------chhHHHHHHHHHhccCC--C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164 151 GLIATKRNSSNAFE------LKDQLYRIWKHYGQTRK--V-----FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217 (250)
Q Consensus 151 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 217 (250)
....+... .+. ..++..++++.++.... + +...|..+...|.+.|++++|...|++.... .|
T Consensus 172 ~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 172 EKSDKEQW---GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHSCCCST---HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred hcCCcchH---HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 54433322 222 33333455555554433 2 1477888889999999999999999998853 23
Q ss_pred CCcchHHHHHHHHhcCChhHHHHHH
Q 037164 218 DFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 218 ~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
..+.....++...|++++|...+
T Consensus 247 --~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 --HNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --TTCHHHHHHHHHHHHHHHC----
T ss_pred --hhHHHHHHHHHHHHHHHhhHHHH
Confidence 23455566788888888887765
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.28 E-value=5.8e-10 Score=94.68 Aligned_cols=137 Identities=7% Similarity=0.008 Sum_probs=105.2
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
..+...|++++|.+.|+......|+...|. .++|...|++..+.. +.+..+|..+..+|...|++++|
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 456677899999999999887766644443 899999999998763 45678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHh
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEG 151 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~ 151 (250)
.+.++...+.+ +.+..+|..+..+|...|++++|.+++++.... .+.+...+..+ .++|...+++...
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999887753 235678888999999999999999999988654 12223333333 7778888877764
Q ss_pred h
Q 037164 152 L 152 (250)
Q Consensus 152 ~ 152 (250)
.
T Consensus 407 ~ 407 (537)
T 3fp2_A 407 L 407 (537)
T ss_dssp H
T ss_pred c
Confidence 3
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.24 E-value=2.3e-10 Score=86.96 Aligned_cols=181 Identities=10% Similarity=-0.070 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|..+|++..+. .+.+..++..+..+|.+.|++++|.+.+++..+.. +.+..+|..+...|...|++++|.+.+++
T Consensus 39 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 39 YEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp ---CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45555555555543 24456778888888888888888888888876652 23567777788888888888888888888
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcC
Q 037164 122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g 198 (250)
+... .+.+...+..+ +. .|...++.+++.+.++.. .+.+...+..+...+.+.|
T Consensus 117 ~~~~--~~~~~~~~~~~---a~------------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 117 ALRA--GMENGDLFYML---GT------------------VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHH--TCCSHHHHHHH---HH------------------HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHh--CCCCHHHHHHH---HH------------------HHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 7653 12222332222 00 111112222222222221 2234466778888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
++++|...|++.... .+.+..++..+...|...|++++|...++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999988754 3345678888899999999999999999887653
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.21 E-value=1.8e-09 Score=83.50 Aligned_cols=206 Identities=10% Similarity=-0.052 Sum_probs=142.6
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCCh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNR 77 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~ 77 (250)
..+.+.|++++|.++|+......|+.. .+. .++|...|++..+..-.|+ ..+|..+..+|...|++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 467788999999999999877744432 333 8999999999987431122 23488899999999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK 148 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~ 148 (250)
++|.+.++...+.. +.+..+|..+...|...|++++|.+.+++.... .+.+...+..+ +++|.+.|++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887752 235678888999999999999999999988654 22223333222 3333333333
Q ss_pred HHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhC-CCCCCC-----
Q 037164 149 SEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDD---VKGAEKTLRNWTSK-NLPYDF----- 219 (250)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-~~~~~~----- 219 (250)
.... .+.+...+..+...+...|+ .++|...+++.... ...|+.
T Consensus 168 a~~~---------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 168 VLEL---------------------------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHH---------------------------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHh---------------------------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 3221 22234556666677777777 77788888876643 222332
Q ss_pred -cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 220 -GLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 220 -~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+|..+-..|.+.|++++|...+++..+
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677788888889999999999888765
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=8.1e-10 Score=84.51 Aligned_cols=182 Identities=14% Similarity=-0.069 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCcc----HHH
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLD----FNL 134 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~----~~~ 134 (250)
....|..+-..+...|++++|.++|++..+.. ++..+|..+..+|...|++++|.+.+++.... +...++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999998887 78999999999999999999999999987542 122222 344
Q ss_pred HHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHH
Q 037164 135 LAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKG 202 (250)
Q Consensus 135 ~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 202 (250)
+..+ .++|...+++..... +... .+...++.+++.+.++.... .+...|..+...+...|++++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH-RTAD---ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-chhH---HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 4444 889999998887533 2222 66677777777777766432 344778888899999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 203 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
|...|++..... +.+..+|..+...|.+.|++++|...+++..+.
T Consensus 158 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 158 AVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999988543 446788999999999999999999999998764
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.17 E-value=8.1e-10 Score=85.50 Aligned_cols=203 Identities=9% Similarity=-0.150 Sum_probs=149.2
Q ss_pred hhHHHHHHHHHHHCCC---CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHH
Q 037164 42 VGKAEMVVQEMKDMGF---ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~---~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~ 118 (250)
.++|...|+++.+... +.+..+|..+..+|...|++++|.+.|++..+.+ +.+..+|..+...|...|++++|.+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 8999999999988632 2257889999999999999999999999988753 33678999999999999999999999
Q ss_pred HHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc----chhHHHHHHHHHhccCC--CC
Q 037164 119 INMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE----LKDQLYRIWKHYGQTRK--VF 183 (250)
Q Consensus 119 ~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~ 183 (250)
+++.... .+.+...+..+ .++|...++++.... |.......+. ..++.+++...++.... |+
T Consensus 100 ~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 100 FDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 9998663 11223333333 899999999987543 2222000011 45666666666644322 33
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP---YDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
......+...+...++.++|...+++....... .+..++..+...|.+.|++++|...|++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 333345778888888999999999987643221 12578899999999999999999999998764
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.14 E-value=1.2e-08 Score=79.14 Aligned_cols=206 Identities=12% Similarity=0.003 Sum_probs=145.0
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccccccc---------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh---
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG---------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL--- 73 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~--- 73 (250)
..+.+.|++++|.++|+...... ++..+. .++|...|++..+.+ +...+..+-..|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCC
Confidence 35667789999999998776631 111111 678888888888875 67788888888888
Q ss_pred -cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHH
Q 037164 74 -TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKK 148 (250)
Q Consensus 74 -~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~ 148 (250)
.+++++|.+.|+...+.+ +...+..+-..|.. .+++++|.+.|++.... + +...+..+ ..
T Consensus 90 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l--------g~ 154 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL--------GS 154 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH--------HH
T ss_pred cccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH--------HH
Confidence 888888888888877764 67778888888888 88888888888888765 4 12222111 00
Q ss_pred HH-hhhhccCCchhhhcchhHHHHHHHHHhccCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcch
Q 037164 149 SE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLP 222 (250)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ 222 (250)
+. .+. . ..++.+++.+.++.... .+...+..+-..|.. .++.++|...|++....+. ...+
T Consensus 155 ~~~~~~----~------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~ 221 (273)
T 1ouv_A 155 LYDAGR----G------TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGC 221 (273)
T ss_dssp HHHHTS----S------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHcCC----C------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHH
Confidence 00 000 0 12334444444443322 344667778888888 9999999999999886643 5678
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 037164 223 SSLIDAHCK----NGLLEKAQSLINHAETKK 249 (250)
Q Consensus 223 ~~li~~~~~----~g~~~~a~~~~~~m~~~g 249 (250)
..|-..|.+ .+++++|...+++..+.|
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888998 999999999999988765
No 36
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.12 E-value=2.7e-08 Score=78.93 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CCcchHHHHHHHHhcCChhHHHH
Q 037164 167 DQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-LPY--DFGLPSSLIDAHCKNGLLEKAQS 240 (250)
Q Consensus 167 ~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~ 240 (250)
++.+++...++.. .+.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.+.|..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444433 23455888999999999999999999999998763 455 35689999999999999999999
Q ss_pred HHHHHHhc
Q 037164 241 LINHAETK 248 (250)
Q Consensus 241 ~~~~m~~~ 248 (250)
+++++.+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.12 E-value=5.8e-10 Score=87.99 Aligned_cols=193 Identities=11% Similarity=-0.003 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHHHCCCCccH--HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRT--IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~--~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
.+.|+..+++... ..|+. ...-.+..+|...|+++.|..-++. .-.|+..++..+...+...++.++|.+.+
T Consensus 15 y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 15 YQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5667776666544 33543 3556678899999999999986653 24567788999999999999999999999
Q ss_pred HHHhhCCCCCccHHH-HHHH---------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--C
Q 037164 120 NMTESNPQMVLDFNL-LAVL---------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--V 182 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~-~~~l---------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~ 182 (250)
+++... +..|+... +..+ .++|.+.+++ |..... ..|...++.+++.+.++.... |
T Consensus 89 ~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 161 (291)
T 3mkr_A 89 DREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161 (291)
T ss_dssp HHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 999776 55554332 2222 7888888876 222211 022267777777777766543 4
Q ss_pred ChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 183 FNKGY---MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 183 ~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+.... ...+..+...|++++|..+|+++... .+.+..+++.+..+|.+.|++++|...++++++.
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43211 22334444568999999999999965 5668889999999999999999999999998763
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.10 E-value=5.4e-09 Score=78.70 Aligned_cols=157 Identities=13% Similarity=-0.021 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc-----------CChhHHHHHHHHHhhCCC
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA-----------SDIHGMDKIINMTESNPQ 127 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~-----------~~~~~a~~~~~~m~~~~g 127 (250)
.+...+..+-.++.+.|++++|...+++..+.+ +.+...|..+-..+.+. |++++|...+++....
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-- 113 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-- 113 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--
Confidence 445666666666677777777777776655532 12345566666666666 6777777766665432
Q ss_pred CCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 037164 128 MVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 128 ~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 198 (250)
-+-+...+..+ .++|...|++..... .+...+..+-..|...|
T Consensus 114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----------------------------DTPEIRSALAELYLSMG 165 (217)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------------------------cchHHHHHHHHHHHHcC
Confidence 11112222211 333333333322111 23456778888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
++++|...|++.... .+.+...+..+...+.+.|++++|...+++...
T Consensus 166 ~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 166 RLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred CHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999998753 344677888899999999999999999887643
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.10 E-value=1.4e-08 Score=73.88 Aligned_cols=165 Identities=12% Similarity=-0.043 Sum_probs=118.8
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
-++.+|..|-..|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.+.++..... .- .+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DT-TSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-CCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-Cc-hhHHHHHHH
Confidence 367889999999999999999999999877652 235678888999999999999999999988654 11 122222111
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHH---hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY---GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
.. .+...++.+.+.+.+ ....+.+...+..+-..|.+.|++++|+..|++.... .
T Consensus 80 --------~~-------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~ 137 (184)
T 3vtx_A 80 --------GS-------------ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-K 137 (184)
T ss_dssp --------HH-------------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred --------HH-------------HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-c
Confidence 00 000111111112222 2223344567888889999999999999999998854 3
Q ss_pred CCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 216 PYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 216 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+.+..+|..+-..|.+.|++++|...|++.++.
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 446788999999999999999999999998763
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=4.1e-09 Score=82.83 Aligned_cols=204 Identities=12% Similarity=0.008 Sum_probs=124.3
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEE 89 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 89 (250)
+-..+...|++++|..+|++.... +.+......+....++..+...|...|++++|.+++++..+
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~---------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALED---------------LEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334555667777777766665542 11111112233456777788888888888888888887655
Q ss_pred c------CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCC-----CCCcc-HHHHHHH---------HHHHHHHHH
Q 037164 90 K------SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNP-----QMVLD-FNLLAVL---------LYMAMTMLK 147 (250)
Q Consensus 90 ~------gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~~~-~~~~~~l---------~~~a~~~~~ 147 (250)
. +-.| ...+|..+...|...|++++|.+.+++..... +..|+ ...+..+ +++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 2222 34567777788888888888888888765420 11121 2222222 444554444
Q ss_pred HHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------
Q 037164 148 KSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-------------- 213 (250)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 213 (250)
+.......... ...+.....+..+...|.+.|++++|...+++....
T Consensus 178 ~a~~~~~~~~~-------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 178 RALEIYQTKLG-------------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHHHTSC-------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 44322110000 000012356777778888888888888888887642
Q ss_pred ----------------------------------CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 214 ----------------------------------NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 214 ----------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+.+..++..+...|.+.|++++|..++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233456788899999999999999999998865
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=2.2e-09 Score=83.12 Aligned_cols=188 Identities=13% Similarity=0.022 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc------CCCC-CchhHhhhHHHHHhcCChhH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK------SING-DQFTLGIRPSAYAAASDIHG 114 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------gi~p-~~~ty~~li~~~~~~~~~~~ 114 (250)
.++|++++++....+-+....++..+..+|...|++++|..++++..+. +-.| ...+|..+...|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 4455555666654444456788899999999999999999999987654 2223 35678888899999999999
Q ss_pred HHHHHHHHhhC------CCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc
Q 037164 115 MDKIINMTESN------PQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT 179 (250)
Q Consensus 115 a~~~~~~m~~~------~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (250)
|.+.+++.... +..+....++..+ +++|...+++.......... ..
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~ 164 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-------------------PD 164 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-------------------TT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-------------------CC
Confidence 99999887542 0111222333333 55555555555432110000 00
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------------------------
Q 037164 180 RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK---------------------------------------------- 213 (250)
Q Consensus 180 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------------------- 213 (250)
.+.....+..+...|.+.|++++|...+++....
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 0012356777778888888888888888886642
Q ss_pred --CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 214 --NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 214 --~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..+....++..+...|...|++++|..++++.++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11123446888999999999999999999998764
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.05 E-value=2e-08 Score=75.03 Aligned_cols=166 Identities=8% Similarity=-0.080 Sum_probs=122.1
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV 137 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 137 (250)
+.+..+|..+...|...|++++|.++++...+.. +.+...|..+...|...|++++|.+.+++.... .+.+..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 81 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNN 81 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHH
Confidence 3456788999999999999999999999988752 345778999999999999999999999998653 1223333322
Q ss_pred HHHHHHHHHHHHHhhhhccCCchhhhcch-hHHHHHHHHHhccC---C-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 138 LLYMAMTMLKKSEGLIATKRNSSNAFELK-DQLYRIWKHYGQTR---K-V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 138 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
+. . .|... ++.+++.+.++... . | +...+..+...+.+.|++++|...++++.
T Consensus 82 l~--------~-------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 82 YG--------W-------------FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HH--------H-------------HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH--------H-------------HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 20 0 11122 33333333332221 1 2 24778888899999999999999999988
Q ss_pred hCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
... +.+...+..+...|.+.|++++|..+++++.+.
T Consensus 141 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 141 AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 345778999999999999999999999988753
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.04 E-value=2.2e-08 Score=75.29 Aligned_cols=176 Identities=11% Similarity=-0.059 Sum_probs=127.9
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV 137 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 137 (250)
+++...+..+-..+.+.|++++|...|+...+. -+.+...|..+-.++.+.|++++|...+++.... -+.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 567889999999999999999999999987764 2235678888899999999999999999998653 1222333322
Q ss_pred HHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037164 138 LLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN 214 (250)
Q Consensus 138 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 214 (250)
+ +. ++..... .... .+...++.+++...++... +.+...|..+-..+...|++++|...|++.....
T Consensus 79 l---g~-~~~~~~~---~~~~---~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 79 L---SE-AYVALYR---QAED---RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp H---HH-HHHHHHH---TCSS---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H---HH-HHHHhhh---hhhh---hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 2 00 0001000 0000 1112356666666665542 2345778888899999999999999999998766
Q ss_pred CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 215 LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 215 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+...+..+-..|...|++++|...+++..+.
T Consensus 149 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 149 --DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67889999999999999999999999998763
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.02 E-value=2.8e-08 Score=75.91 Aligned_cols=159 Identities=9% Similarity=-0.030 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-- 138 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-- 138 (250)
...|..+...|...|++++|.+++++..+.. +.+...|..+...|...|++++|.+.++++... .+.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 6788999999999999999999999988763 346788899999999999999999999998654 12233333332
Q ss_pred -------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 139 -------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 139 -------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
.++|.+.++++.. .+ ..+.+...+..+...+.+.|++++|...+++..
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~--~~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ--DT-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT--CT-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh--Cc-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 00 011234677888899999999999999999988
Q ss_pred hCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
... +.+..++..+...|...|++++|..+++++.+.
T Consensus 169 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 169 RLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 345778999999999999999999999998754
No 45
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.02 E-value=2e-08 Score=72.48 Aligned_cols=155 Identities=13% Similarity=0.040 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--- 138 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--- 138 (250)
..|..+...+...|++++|.+++++..+. -+.+..+|..+...+...|++++|.+.+++.... .+.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 44555666666667777777766655433 1224555666666666777777777776665442 11122222211
Q ss_pred ------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 139 ------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 139 ------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.++|.+.+++... ..+.+...+..+...+.+.|++++|...+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE---------------------------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh---------------------------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 2222222222111 1123345677788888999999999999999875
Q ss_pred CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.. +.+..++..+...|...|++++|...+++..+
T Consensus 139 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 139 LR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 44567888889999999999999999988765
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.00 E-value=1.4e-10 Score=95.29 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+++|.++++++. +..+|..|..++.+.|++++|.+.|.. .+|..+|..++.++...|++++|.+.++.
T Consensus 19 ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 19 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 688889999883 335999999999999999999999974 36888999999999999999999998887
Q ss_pred HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChh
Q 037164 122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNK 185 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 185 (250)
.++. .+++.+.+.+ +.++.++++. |+.. +|. ..+..+++...+... .
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~---a~~~IGd~~~~~g~yeeA~~~Y~~a-----~ 149 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFING------PNNA---HIQQVGDRCYDEKMYDAAKLLYNNV-----S 149 (449)
T ss_dssp -------------------------CHHHHTTTTTC------C-------------------CTTTHHHHHHHT-----T
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHH---HHHHHHHHHHHcCCHHHHHHHHHHh-----h
Confidence 7653 2334444444 3333333321 2221 333 666666666666644 5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
.|..+.+++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|..+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999999988 27899999999999999999997543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.99 E-value=6.5e-08 Score=79.14 Aligned_cols=213 Identities=9% Similarity=-0.036 Sum_probs=144.7
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhcc-ccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 77 (250)
-.++.+.|++++|.+.|+......|+ ...|. .++|+..|++..+.+ +-+...|+.+-.++.+.|++
T Consensus 104 g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCH
Confidence 34667789999999999988777444 33333 678888898888764 44678888888889999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccC
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKR 157 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~ 157 (250)
++|+..|+...+.+ +-+...|..+-.++.+.|++++|...++++... -+-+...|+.+ +. ++..+. ..
T Consensus 183 ~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~l---g~-~l~~l~-----~~ 250 (382)
T 2h6f_A 183 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQR---YF-VISNTT-----GY 250 (382)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHH---HH-HHHHTT-----CS
T ss_pred HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHH---HH-HHHHhc-----Cc
Confidence 99999999877752 226678888888899999999999999887653 11233333222 00 011100 00
Q ss_pred CchhhhcchhH-HHHHHHHHhc---cCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Q 037164 158 NSSNAFELKDQ-LYRIWKHYGQ---TRKVFNKGYMTMMGLLLKLD--DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK 231 (250)
Q Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 231 (250)
. ... +.+..+.++. ..+.+...|+.+-..+.+.| +.++|.+.+.++ ...+.+...+..|...|.+
T Consensus 251 ~-------~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 251 N-------DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp C-------SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHH
T ss_pred c-------hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence 0 000 1111122222 22234578888888888888 689999999887 3344566778899999988
Q ss_pred cC---------ChhHHHHHHHHH
Q 037164 232 NG---------LLEKAQSLINHA 245 (250)
Q Consensus 232 ~g---------~~~~a~~~~~~m 245 (250)
.| .+++|..+++++
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHH
Confidence 74 358999999998
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.90 E-value=1e-08 Score=81.11 Aligned_cols=237 Identities=11% Similarity=-0.048 Sum_probs=158.3
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHC----CCC-ccHHHHHHHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDM----GFA-RRTIYCYIMMIL 70 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~----~~~-p~~~~y~~li~~ 70 (250)
..+.+.|++++|..+|++.....|+. ..|. .++|...|++..+. +-. ....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 35678899999999999987764442 1222 78888888876442 222 235678889999
Q ss_pred HhhcCChhhHHHHHHHHHhcCC-CCC----chhHhhhHHHHHhcCC--------------------hhHHHHHHHHHhhC
Q 037164 71 NYLTGNREKIDALMLEMEEKSI-NGD----QFTLGIRPSAYAAASD--------------------IHGMDKIINMTESN 125 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~gi-~p~----~~ty~~li~~~~~~~~--------------------~~~a~~~~~~m~~~ 125 (250)
|...|++++|.+.+++..+..- .++ ..++..+...|...|+ +++|.+.+++....
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998654311 122 3478888899999999 99999998876321
Q ss_pred ---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCch---hhhc-------chhHHHHHHHHHhccCC-
Q 037164 126 ---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSS---NAFE-------LKDQLYRIWKHYGQTRK- 181 (250)
Q Consensus 126 ---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~- 181 (250)
.+..+. ..++..+ .++|...+++............ ..+. ..++.+++.+.++....
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 011111 1223333 7888888887763322111100 0111 55555666555544311
Q ss_pred --------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 182 --------VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN----L-PYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 182 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
....++..+...+...|++++|...+++..... . .....++..+...|.+.|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 114567778889999999999999999876421 1 112447788999999999999999999988753
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=1.2e-08 Score=83.75 Aligned_cols=236 Identities=11% Similarity=-0.043 Sum_probs=160.4
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc-----ccc-----------hhHHHHHHHHHHHC----C-CCccHHHHHHHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL-----FFG-----------VGKAEMVVQEMKDM----G-FARRTIYCYIMMIL 70 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-----~y~-----------~~~A~~~~~~m~~~----~-~~p~~~~y~~li~~ 70 (250)
..+.+.|++++|..+|+......|+.. .|. .++|...|++..+. + -+....++..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 356788999999999999887744422 222 78888888887553 1 13345788899999
Q ss_pred HhhcCChhhHHHHHHHHHhc----CCC-CCchhHhhhHHHHHhcCC-----------------hhHHHHHHHHHhhC---
Q 037164 71 NYLTGNREKIDALMLEMEEK----SIN-GDQFTLGIRPSAYAAASD-----------------IHGMDKIINMTESN--- 125 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~----gi~-p~~~ty~~li~~~~~~~~-----------------~~~a~~~~~~m~~~--- 125 (250)
|...|++++|.+.+++..+. +-. ....+|..+-..|...|+ +++|.+.+++....
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986543 111 234578888899999999 99999998876431
Q ss_pred CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCc----h------hhhcchhHHHHHHHHHhccCC----
Q 037164 126 PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNS----S------NAFELKDQLYRIWKHYGQTRK---- 181 (250)
Q Consensus 126 ~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~---- 181 (250)
.+..+. ..++..+ +++|...+++........... . ..|...++.+++.+.++....
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 011111 1233333 788888888876332211110 0 011155666666655544321
Q ss_pred -----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 182 -----VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-----PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 182 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.....+..+-..|...|++++|...+++...... .....++..+...|.+.|++++|...+++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1146777888999999999999999998764211 11244788899999999999999999998765
No 50
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=7.6e-08 Score=65.49 Aligned_cols=131 Identities=13% Similarity=-0.010 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM 141 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~ 141 (250)
..|..+...|...|++++|.++++++.+.+ +.+...|..+...+...|++++|.++++++... + |
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~--~----------- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D--P----------- 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--T-----------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C--C-----------
Confidence 357788888999999999999999987753 336677888889999999999999998887543 1 0
Q ss_pred HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 037164 142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221 (250)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 221 (250)
.+...+..+...+...|++++|..+++++.... +.+..+
T Consensus 67 ----------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 105 (136)
T 2fo7_A 67 ----------------------------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEA 105 (136)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ----------------------------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence 112345667778888899999999998887542 345677
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 222 PSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 222 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+..+...|.+.|++++|...++++.+.
T Consensus 106 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 106 WYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888899999999999998887654
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.87 E-value=2.2e-08 Score=81.62 Aligned_cols=236 Identities=11% Similarity=-0.036 Sum_probs=159.4
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHC----CCCc-cHHHHHHHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDM----GFAR-RTIYCYIMMIL 70 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~----~~~p-~~~~y~~li~~ 70 (250)
..+.+.|++++|..+|+......|+. ..|. .++|...|++..+. +-.| ...++..+...
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 46778899999999999987774442 1222 78888888876442 2222 35678889999
Q ss_pred HhhcCChhhHHHHHHHHHhcCC-CCC----chhHhhhHHHHHhcCC--------------------hhHHHHHHHHHhhC
Q 037164 71 NYLTGNREKIDALMLEMEEKSI-NGD----QFTLGIRPSAYAAASD--------------------IHGMDKIINMTESN 125 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~gi-~p~----~~ty~~li~~~~~~~~--------------------~~~a~~~~~~m~~~ 125 (250)
|...|++++|...+++..+..- .++ ..++..+-..|...|+ +++|.+.+++....
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998654310 012 4478888899999999 99999998875331
Q ss_pred ---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCch---hhhc-------chhHHHHHHHHHhccC--
Q 037164 126 ---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSS---NAFE-------LKDQLYRIWKHYGQTR-- 180 (250)
Q Consensus 126 ---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~-- 180 (250)
.+..|. ..++..+ .++|...+++............ ..+. ..++.+++...++...
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 022222 2233333 7888888888774332211100 0111 5555566655554431
Q ss_pred -----C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 181 -----K--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYD----FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 181 -----~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
. ....++..+-..|.+.|++++|...+++...... .++ ..++..+...|...|++++|...+++..+
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1145777888999999999999999998764311 111 55788899999999999999999998764
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.87 E-value=6.7e-08 Score=81.39 Aligned_cols=193 Identities=8% Similarity=-0.095 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh-hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
+++|...+++.... -+.+...+..+-.+|...|++ ++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66777777776554 345788889999999999999 99999999877652 2246788889999999999999999999
Q ss_pred HHhhCCCCCccHHHHHHH------------------HHHHHHHHHHHHhhhhccCCchhhhc-------ch--------h
Q 037164 121 MTESNPQMVLDFNLLAVL------------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LK--------D 167 (250)
Q Consensus 121 ~m~~~~g~~~~~~~~~~l------------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~--------~ 167 (250)
+.... .|+...+..+ +++|.+.+++..... |.... .|. .. +
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~--~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGR--SWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH--HHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHHHHHhhccccc
Confidence 98754 3554444444 345555555555332 22221 222 33 6
Q ss_pred HHHHHHHHHhccCC--C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 168 QLYRIWKHYGQTRK--V----FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 168 ~~~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
+.+++.+.++.... | +...|..+-..|...|++++|...|++..... +.+...+..+...+...|++++|...
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655422 3 44667777777777788888888877766432 22445667777777777777777765
Q ss_pred HH
Q 037164 242 IN 243 (250)
Q Consensus 242 ~~ 243 (250)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.86 E-value=5.8e-08 Score=73.48 Aligned_cols=159 Identities=13% Similarity=-0.020 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
....+|..+...+.+.|++++|..+|++..+. -+.+...+..+...+...|++++|.+.+++.... .+.+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence 45678888899999999999999999998774 3346788888999999999999999999998654 12233333222
Q ss_pred ---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037164 139 ---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209 (250)
Q Consensus 139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 209 (250)
.++|.+.+++... ..+.+...+..+...+.+.|++++|...+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALR---------------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---------------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH---------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3333333333221 2223456788888999999999999999999
Q ss_pred HHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 210 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.... .+.+...+..+...|.+.|++++|...++++.+.
T Consensus 151 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 151 AVEL-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHh-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8854 3346778999999999999999999999988754
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.84 E-value=9.2e-07 Score=68.44 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=128.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChh
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIH 113 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~ 113 (250)
.++|...|++..+. .+..++..+-..|.. .+++++|.+.|++..+.+ +...+..+-..|.. .++++
T Consensus 22 ~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 22 FTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHH
Confidence 78899999998884 356778888888888 999999999999887775 67788888888888 99999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH-hhhhccCCchhhhcchhHHHHHHHHHhccCC-CChhhHHHHH
Q 037164 114 GMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK-VFNKGYMTMM 191 (250)
Q Consensus 114 ~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li 191 (250)
+|.+.|++.... + +...+..+ ..+. .+. . ..++.+++.+.++.... .+...+..+-
T Consensus 96 ~A~~~~~~a~~~-~---~~~a~~~l--------g~~~~~~~----~------~~~~~~~A~~~~~~a~~~~~~~a~~~lg 153 (273)
T 1ouv_A 96 KALQYYSKACDL-K---YAEGCASL--------GGIYHDGK----V------VTRDFKKAVEYFTKACDLNDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHHT-T---CHHHHHHH--------HHHHHHCS----S------SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHc-C---CccHHHHH--------HHHHHcCC----C------cccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999988776 5 22222222 0000 000 0 12333444444433322 2445667777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 037164 192 GLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKAQSLINHAETKK 249 (250)
Q Consensus 192 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 249 (250)
..|.. .++.++|...|++....+ +...+..+-..|.. .+++++|...+++..+.|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 77877 899999999999988664 45778889999999 999999999999987764
No 55
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.81 E-value=3e-07 Score=76.83 Aligned_cols=227 Identities=12% Similarity=0.002 Sum_probs=134.4
Q ss_pred cChhHHHHHHHHhhhhhcccc-ccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChh
Q 037164 18 HGVEQAEIYFDNISKLLRQCL-FFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNRE 78 (250)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~-~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~ 78 (250)
+++++|...|++.....|+.. .+. .++|++.|++..+.+ +.+..++..+...+.. .|+++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence 468999999999877755432 222 467888888887753 3456666666555544 46778
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--------------------
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-------------------- 138 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-------------------- 138 (250)
+|.+++++..... +.+..++..+-..|.+.|++++|.+.+++.... .+-+..++..+
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999876652 335677888999999999999999999998653 22233333332
Q ss_pred --------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--CChh----hHHHHHH-HHHhcC
Q 037164 139 --------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--VFNK----GYMTMMG-LLLKLD 198 (250)
Q Consensus 139 --------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~li~-~~~~~g 198 (250)
.++|...+++..... |..... ..|...++.+++.+.++.... ++.. .+..+.. .+...|
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 345555555554322 222211 011166677777777655421 2221 1222222 235678
Q ss_pred CHHHHHHHHHHHHhCC-----------------------CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 199 DVKGAEKTLRNWTSKN-----------------------LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~-----------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
+.++|+..|++..... .+.+..+|+.|-..|...|++++|.+.|++.++.|
T Consensus 387 ~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8999988887765322 34567889999999999999999999999888754
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.79 E-value=6.2e-07 Score=69.06 Aligned_cols=181 Identities=7% Similarity=-0.093 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~ 119 (250)
.++|..+|++..+.. +.+..++..+..+|.+.|++++|.+.++...+.+-.|+. .+|..+...|...|++++|.+.+
T Consensus 19 ~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97 (272)
T ss_dssp HHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 677888888887753 334557777777888888888888888877764322222 22677778888888888888888
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHh
Q 037164 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLK 196 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~ 196 (250)
++.... .+.+...+..+ + . .|...++.+++.+.++.... | +...|..+-..+..
T Consensus 98 ~~a~~~--~~~~~~~~~~l---~-----------------~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 98 QAAVDR--DTTRLDMYGQI---G-----------------S-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHH--STTCTHHHHHH---H-----------------H-HHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc--CcccHHHHHHH---H-----------------H-HHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 876543 11111222111 0 0 22255566666666655533 3 33556666524445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC---hhHHHHHHHHHHh
Q 037164 197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL---LEKAQSLINHAET 247 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 247 (250)
.+++++|...|++.... .+.+...+..+...+...|+ +++|...+++..+
T Consensus 155 ~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 56999999999998854 23346777888888888888 8889888888765
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.79 E-value=1.7e-06 Score=73.76 Aligned_cols=198 Identities=7% Similarity=-0.003 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhh-------cCChh-------hHHHHHHHHHhcCCCC-CchhHhhhHHHHHh
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-------TGNRE-------KIDALMLEMEEKSING-DQFTLGIRPSAYAA 108 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~-------~g~~~-------~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~ 108 (250)
+|..+|++.... .+-+...|..+...+.+ .|+++ +|..++++-.+. +.| +...|..+...+.+
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 566788888775 34567888888888875 79987 899999976653 344 57889999999999
Q ss_pred cCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc--------chhHHHH
Q 037164 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE--------LKDQLYR 171 (250)
Q Consensus 109 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 171 (250)
.|++++|.++|++....+...| ...|... +++|.++|++..... |... . .|. ..++.++
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~-~-~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH-H-VYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT-H-HHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch-H-HHHHHHHHHHHHcCChhH
Confidence 9999999999999876411112 1234333 788888888887543 2222 1 221 3455666
Q ss_pred HHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC--CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 172 IWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYD--FGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 172 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
+...++.. .+.+...|..++..+.+.|+.++|..+|++....+. .|+ ..+|...+......|+.+.+..+.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666544 234568899999999999999999999999986532 222 337888888888999999999999987
Q ss_pred Hh
Q 037164 246 ET 247 (250)
Q Consensus 246 ~~ 247 (250)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 58
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.78 E-value=1.7e-06 Score=72.95 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=12.6
Q ss_pred cchHHHHHHHHh----cCChhHHHHHHHHHHh
Q 037164 220 GLPSSLIDAHCK----NGLLEKAQSLINHAET 247 (250)
Q Consensus 220 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 247 (250)
..+..|-..|.. .+++++|...|++..+
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 344444444444 4444444444444443
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.78 E-value=1.5e-06 Score=73.34 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHH
Q 037164 168 QLYRIWKHYGQTRK-VFNKGYMTMMGLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKA 238 (250)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a 238 (250)
+..++.+.++.... .+...+..+-..|.. .++.++|...|++....+ +...+..|-..|.+ .+++++|
T Consensus 346 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 55566666555433 345666666667766 678888888888877654 45667777777777 7888888
Q ss_pred HHHHHHHHhcC
Q 037164 239 QSLINHAETKK 249 (250)
Q Consensus 239 ~~~~~~m~~~g 249 (250)
...|++..+.|
T Consensus 423 ~~~~~~A~~~~ 433 (490)
T 2xm6_A 423 WAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHCC
Confidence 88888776643
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.78 E-value=1e-07 Score=74.72 Aligned_cols=171 Identities=15% Similarity=0.035 Sum_probs=120.9
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-------CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-----
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-------SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----- 125 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----- 125 (250)
+.+..++..+...|...|++++|..++++..+. .-.....++..+...|...|++++|.+.+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999998763 23335577888999999999999999999987543
Q ss_pred -CCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 037164 126 -PQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLL 195 (250)
Q Consensus 126 -~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 195 (250)
...+....++..+ .++|...+.+........ .....+.....+..+...+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------------------LGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------------cCCCChHHHHHHHHHHHHHH
Confidence 0112222333333 455555555544221100 00000122366788889999
Q ss_pred hcCCHHHHHHHHHHHHhC------C-CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 196 KLDDVKGAEKTLRNWTSK------N-LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 196 ~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..|++++|..++++.... + .+....++..+...|...|++++|..+++++.+
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998753 2 222355788899999999999999999999875
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.76 E-value=3.6e-07 Score=80.65 Aligned_cols=163 Identities=7% Similarity=-0.068 Sum_probs=119.6
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLL 135 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~ 135 (250)
+-++.+|+.|-.+|.+.|++++|.+.|++..+. .| +...|+.+-.+|.+.|++++|.+.|++..+. .|+ ...|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~ 80 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAY 80 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 345788999999999999999999999987664 44 4678889999999999999999999987642 232 3333
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 136 AVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 136 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
..+ . . +|...++.+++.+.+++. .+.+...|+.+-..|.+.|++++|+..|++...
T Consensus 81 ~nL--------g------------~-~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 81 SNM--------G------------N-TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHH--------H------------H-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH--------H------------H-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 322 0 0 111223333333333322 123347788999999999999999999999885
Q ss_pred CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.. +-+...+..|...|...|++++|.+.++++.+
T Consensus 140 l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 140 LK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 42 33567899999999999999999999988765
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.73 E-value=1.2e-06 Score=69.28 Aligned_cols=186 Identities=6% Similarity=-0.024 Sum_probs=135.4
Q ss_pred hHHHHHHHHhhhhhcc-ccccc------h-------------------hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164 21 EQAEIYFDNISKLLRQ-CLFFG------V-------------------GKAEMVVQEMKDMGFARRTIYCYIMMILNYLT 74 (250)
Q Consensus 21 ~~a~~~f~~~~~~~~~-~~~y~------~-------------------~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~ 74 (250)
++|...|+......|+ +..|. . ++|..+|++..+.--+-+...|..+...+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6778888887766333 33333 1 78999999998831234566899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCch--hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------HHHH
Q 037164 75 GNREKIDALMLEMEEKSINGDQF--TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----------LYMA 142 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi~p~~~--ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------~~~a 142 (250)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|.++|++.... . +++...|... .++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998876 566543 7999999999999999999999998764 1 2233333222 5678
Q ss_pred HHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC-----CC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164 143 MTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR-----KV--FNKGYMTMMGLLLKLDDVKGAEKTLR 208 (250)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 208 (250)
..+|++..... |.... .+. ..++.+++...++... +| ....|..++..+.+.|+.+.|..+++
T Consensus 189 ~~~~~~al~~~-p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH-TTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888877543 33331 332 5567777776665542 23 34688899999999999999999999
Q ss_pred HHHhC
Q 037164 209 NWTSK 213 (250)
Q Consensus 209 ~m~~~ 213 (250)
++...
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.73 E-value=5.6e-07 Score=73.31 Aligned_cols=212 Identities=10% Similarity=0.028 Sum_probs=130.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhccc----c--c-cc------------hhHHH-----------HHHHHHHHCCCCccHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQC----L--F-FG------------VGKAE-----------MVVQEMKDMGFARRTI 62 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~----~--~-y~------------~~~A~-----------~~~~~m~~~~~~p~~~ 62 (250)
.+-+.+++++|..+++++....+.. . . |. ++.+. +.++++.... ++..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 4557899999999999998774332 1 1 11 34444 6666664421 1111
Q ss_pred H------HHHHHHHHhhcCChhhHHHHHHHHHhc--CCC--C-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCC-CC--
Q 037164 63 Y------CYIMMILNYLTGNREKIDALMLEMEEK--SIN--G-DQFTLGIRPSAYAAASDIHGMDKIINMTESNP-QM-- 128 (250)
Q Consensus 63 ~------y~~li~~~~~~g~~~~a~~~~~~m~~~--gi~--p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-g~-- 128 (250)
. +...-..+...|++++|.+.+++..+. .+. + ...+|..+-..|...|+++.|.+.+++..... ..
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 122445678899999999999987653 111 1 23678888899999999999999998864320 11
Q ss_pred -Ccc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 037164 129 -VLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL 197 (250)
Q Consensus 129 -~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 197 (250)
.+. ..++..+ +++|.+.+.+............ ....++..+-..|...
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ---------------------LMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------------HHHHHHHHHHHHHHHC
Confidence 111 1222222 5666666655543221111100 1124566677777788
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 198 DDVKGAEKTLRNWTSK----NL-PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
|++++|...+++.... +. +....++..+...|.+.|++++|...+++..+
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888887776541 22 33455677777778888888888887777654
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=4e-07 Score=61.80 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=84.7
Q ss_pred hhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
...+.+.|++++|.++|+.+....|+ ...+. .++|..+|+++.+.+ +.+...+..+...+.+.|+++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHH
Confidence 45677889999999999988766332 22222 788888888887753 445677888888888888888
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+|.++++++.+.. +.+..++..+...+.+.|++++|.+.++++..
T Consensus 87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888877653 33567777888888888888888888887754
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.69 E-value=6.3e-07 Score=73.02 Aligned_cols=161 Identities=9% Similarity=-0.071 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCcc-H
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLD-F 132 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~-~ 132 (250)
.+++.+-.+|...|++++|.+.+++..+. +-.+ ...+|..+-.+|...|++++|.+.+++.... .+..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 45555666666666666666666654332 1000 1125555666666666666666666654330 011111 2
Q ss_pred HHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCC---
Q 037164 133 NLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDD--- 199 (250)
Q Consensus 133 ~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~--- 199 (250)
.++..+ .++|...+++..... .....+. ...+..+-..+...|+
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYS-----------------------QKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------HHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------HHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 222222 333333333332111 1111111 1235566677788888
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+++|..++++.. ..+.....+..|-..|...|++++|...+++..+
T Consensus 322 ~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 322 IQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777776642 1222344677788889999999999999988765
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.69 E-value=1.9e-06 Score=62.44 Aligned_cols=130 Identities=8% Similarity=-0.072 Sum_probs=83.4
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
-+..+|..+..+|.+.|++++|...+....... +.+...+..+...+...++++.+.+.+++.... .+.+...+..+
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~l 113 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKL 113 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 456778888888888888888888888776652 224566666778888888888888888877543 11222222221
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
+ . .|...++.+++.+.++.. .+.+...|..+-.+|.+.|++++|...|++..+
T Consensus 114 ---g-----------------~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 114 ---G-----------------L-VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp ---H-----------------H-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---H-----------------H-HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0 111222223333333222 223446788899999999999999999999875
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.65 E-value=1.8e-06 Score=64.93 Aligned_cols=163 Identities=12% Similarity=-0.071 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHH
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVL 138 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l 138 (250)
|+..+..+-..|.+.|++++|.+.|+...+..-.++...+..+-.++.+.|++++|.+.+++.... .| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence 445566666666666666666666666655433245555555666666666666666666665532 12 22222222
Q ss_pred ---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037164 139 ---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209 (250)
Q Consensus 139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 209 (250)
.++|...+++..... |.... . +.. -...|..+-..+.+.|++++|...|++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~--~----------~~~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNAT--I----------EKL-------YAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHH--H----------HHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHH--H----------HHH-------HHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 334444433333211 11110 0 000 002345555566667777777777776
Q ss_pred HHhCCCCCC---CcchHHHHHHHHhcCCh---------------------------hHHHHHHHHHHh
Q 037164 210 WTSKNLPYD---FGLPSSLIDAHCKNGLL---------------------------EKAQSLINHAET 247 (250)
Q Consensus 210 m~~~~~~~~---~~~~~~li~~~~~~g~~---------------------------~~a~~~~~~m~~ 247 (250)
.... .|+ ...|..+-..|...|+. ++|...+++..+
T Consensus 143 al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 143 ATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6532 232 45566666666666665 888888888765
No 68
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.63 E-value=1.1e-05 Score=67.13 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=143.0
Q ss_pred hHhhhccChhHHHHHHHHhhhhhc---cc------cccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLR---QC------LFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMI 69 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~---~~------~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~ 69 (250)
.+|...|++++|...|++.....+ ++ .+|. .++|.+.|++..+.+ +-+...+..+..
T Consensus 102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~ 180 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAI 180 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 367788999999999987755411 11 1121 679999999998863 334455555544
Q ss_pred H---HhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCCCccHHHHHHH---
Q 037164 70 L---NYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQMVLDFNLLAVL--- 138 (250)
Q Consensus 70 ~---~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--- 138 (250)
+ +...++.++|++.++...+. .| +..++..+...+.. .+++++|.+++++.... .+.+...+..+
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHH
Confidence 4 45567888899988876654 34 44556655555554 46788999999987653 22233334333
Q ss_pred ------HHHHHHHHHHHHhhhhccCCchhhhc--------------------------chhHHHHHHHHHhcc---CCCC
Q 037164 139 ------LYMAMTMLKKSEGLIATKRNSSNAFE--------------------------LKDQLYRIWKHYGQT---RKVF 183 (250)
Q Consensus 139 ------~~~a~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~---~~~~ 183 (250)
.++|...+.+..... |+... ++. .....+.+...++.. .+..
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~-p~~~~--~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI-PNNAY--LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHH--HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHcCchHHHHHHHHHHHHhC-CChHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 888888888876433 23221 222 112233444444332 3345
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--chHHHHH-HHHhcCChhHHHHHHHHHHh
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG--LPSSLID-AHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~ 247 (250)
...+..+-..|...|++++|+..|++.......+... .+..+.. .+...|++++|...+++.++
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5788889999999999999999999988654433221 1222222 24567999999999988765
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.59 E-value=5.2e-07 Score=69.52 Aligned_cols=197 Identities=8% Similarity=-0.063 Sum_probs=123.9
Q ss_pred hhhccChhHHHHHHHHhhhhh-----cc----ccccc-----------hhHHHHHHHHHHHC------C-CCccHHHHHH
Q 037164 14 IFEVHGVEQAEIYFDNISKLL-----RQ----CLFFG-----------VGKAEMVVQEMKDM------G-FARRTIYCYI 66 (250)
Q Consensus 14 ~~k~~~~~~a~~~f~~~~~~~-----~~----~~~y~-----------~~~A~~~~~~m~~~------~-~~p~~~~y~~ 66 (250)
....|++++|..+|++..... ++ ..++. .++|...|++..+. + -+....+|+.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345678888888887765531 11 11222 78888888887654 2 2344678999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhc------CC-CCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-----CCCCc-cHH
Q 037164 67 MMILNYLTGNREKIDALMLEMEEK------SI-NGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-----PQMVL-DFN 133 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~~------gi-~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-----~g~~~-~~~ 133 (250)
+..+|...|++++|.+++.+..+. .- +....+|..+...|...|++++|.+.+++.... .+..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999987654 11 224577888899999999999999999987542 01123 234
Q ss_pred HHHHH---------HHHHHHHHHHHHhhhhc--------cCCchhhhc-------------chhHHHHHHHHHhccCC--
Q 037164 134 LLAVL---------LYMAMTMLKKSEGLIAT--------KRNSSNAFE-------------LKDQLYRIWKHYGQTRK-- 181 (250)
Q Consensus 134 ~~~~l---------~~~a~~~~~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-- 181 (250)
++..+ .++|...+++....... ... . .+. .......+...++....
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK-P-IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCC-C-HHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHH-H-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 44444 78888888887743211 111 0 111 12222333333333332
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 182 -VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 182 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.....+..+...|.+.|++++|..+|++...
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2236788888999999999999999998763
No 70
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=1.4e-05 Score=59.58 Aligned_cols=177 Identities=10% Similarity=-0.063 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC----ChhHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS----DIHGMDKI 118 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~----~~~~a~~~ 118 (250)
.+|.+.|++..+.| ++..+..|-..|...+++++|.++|+...+.| +...+..|-..|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46788889988875 77889999999999999999999999987765 56777777778877 6 89999999
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH-hhhhccCCchhhhcchhHHHHHHHHHhccCC--CC---hhhHHHHHH
Q 037164 119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VF---NKGYMTMMG 192 (250)
Q Consensus 119 ~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~li~ 192 (250)
|++.... |......... .+- .+.. ..++..++.+.++.... ++ ...+..|-.
T Consensus 76 ~~~A~~~-g~~~a~~~Lg-----------~~y~~g~g----------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 76 AEKAVEA-GSKSGEIVLA-----------RVLVNRQA----------GATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHHHHT-TCHHHHHHHH-----------HHHTCGGG----------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHH-----------HHHHcCCC----------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 9998765 5432222211 111 1110 13345556666655544 21 567777778
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 037164 193 LLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN-G-----LLEKAQSLINHAETKKG 250 (250)
Q Consensus 193 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 250 (250)
.|.. .++.++|..+|++.... +.+...+..|-..|... | ++++|...|++..+.|.
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8887 78999999999998865 34556778888888764 3 89999999999988763
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.56 E-value=3.4e-06 Score=68.60 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDD---VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+..+-..+...++ +.+|...+++.. ..+.....+..+-..|...|++++|...|++..+
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566677777 777777776521 1122234567788889999999999999998765
No 72
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=2.1e-06 Score=67.62 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=112.0
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
|...|++..+.+ .++..+...+..++...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555443 45566667888889999999999999997655432 1255677788899999999999999999997
Q ss_pred hCCCCCcc-----HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CChhhHHHHHHHHHh
Q 037164 124 SNPQMVLD-----FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLK 196 (250)
Q Consensus 124 ~~~g~~~~-----~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 196 (250)
+ ..|| -.+...+ -++ +-.+..+. +....++..+++... |+..+-..++.++.+
T Consensus 164 ~---~~~d~~~~~d~~l~~L-aea---~v~l~~g~-------------~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~ 223 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNL-AES---YIKFATNK-------------ETATSNFYYYEELSQTFPTWKTQLGLLNLHLQ 223 (310)
T ss_dssp H---HSCHHHHHHHHHHHHH-HHH---HHHHHHTC-------------STTTHHHHHHHHHHTTSCSHHHHHHHHHHHHH
T ss_pred h---cCccccccchHHHHHH-HHH---HHHHHhCC-------------ccHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 5 3452 2222111 000 00111110 122233444444322 332233444558999
Q ss_pred cCCHHHHHHHHHHHHhC-----C----CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 197 LDDVKGAEKTLRNWTSK-----N----LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~-----~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.|++++|++.++.+... + -+-|+.+...+|......|+ +|.+++.++.+.
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99999999999977642 1 14466666455555555676 888998888753
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.53 E-value=1.6e-06 Score=62.35 Aligned_cols=123 Identities=14% Similarity=0.003 Sum_probs=89.9
Q ss_pred chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcch
Q 037164 96 QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELK 166 (250)
Q Consensus 96 ~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (250)
...|..+...+...|++++|.+.++++... .+.+...+..+ .++|...+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------- 70 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--------------- 70 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------
Confidence 346777888999999999999999988653 22233333322 3333333333221
Q ss_pred hHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 167 DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
..+.+...+..+...+...|++++|...+++.... .+.+...+..+...|...|++++|..+++++.
T Consensus 71 ------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 71 ------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp ------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 12234567888889999999999999999998854 34567888999999999999999999999887
Q ss_pred hc
Q 037164 247 TK 248 (250)
Q Consensus 247 ~~ 248 (250)
+.
T Consensus 138 ~~ 139 (186)
T 3as5_A 138 GL 139 (186)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=5.6e-05 Score=56.74 Aligned_cols=180 Identities=8% Similarity=-0.049 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhh-CCCCCccHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTES-NPQMVLDFNLL 135 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~-~~g~~~~~~~~ 135 (250)
...+..+...+.+.|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|...|++... .|+...-...+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 345556666777888888888888887764 232 24566677888888888888888888654 22221111111
Q ss_pred HHH----HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CCh-hhH-----------------HHHH
Q 037164 136 AVL----LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFN-KGY-----------------MTMM 191 (250)
Q Consensus 136 ~~l----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-----------------~~li 191 (250)
..+ ...+...+..... ... .+...++.+++...++.... |+. ..+ ..+-
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFG----VDR---SDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp HHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhc----cch---hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0000000000000 000 11123334444443333221 221 111 2445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
..|.+.|++++|...|+++....... ....+..+..+|.+.|++++|...++.+...+
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 67889999999999999988542211 12568889999999999999999999988764
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.48 E-value=3.5e-06 Score=68.48 Aligned_cols=211 Identities=13% Similarity=0.051 Sum_probs=113.4
Q ss_pred hhccChhHHHHHHHHhhhhhccccc-------cc------------hhHHH---------HHHHHHHHCCCCcc-HH---
Q 037164 15 FEVHGVEQAEIYFDNISKLLRQCLF-------FG------------VGKAE---------MVVQEMKDMGFARR-TI--- 62 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~~~~~~~-------y~------------~~~A~---------~~~~~m~~~~~~p~-~~--- 62 (250)
-+.+++++|.++++++......... |. ...+. +.++.+....-+.+ ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 6789999999999998776333211 11 22222 55555543211111 11
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcC-CCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCcc-H
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKS-INGD----QFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLD-F 132 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g-i~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~-~ 132 (250)
.|...-..+...|++++|...|++..+.- -.++ ..+|..+-..|...|+++.|...+++.... .+..+. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 12223344678999999999999876531 1122 357788889999999999999999886432 011111 2
Q ss_pred HHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHH
Q 037164 133 NLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203 (250)
Q Consensus 133 ~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 203 (250)
.++..+ +++|.+.+.+............ ....+++.+-..|...|++++|
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---------------------~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR---------------------FIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH---------------------HHHHHHHHHHHHHHHCCCHHHH
Confidence 233333 6667666666553221111100 0113344444555555555555
Q ss_pred HHHHHHHHhC----CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 204 EKTLRNWTSK----NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 204 ~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
...+++.... +.+....++..+...|.+.|++++|...+++..
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555554420 122224444555555555555555555555544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.46 E-value=2.7e-05 Score=62.93 Aligned_cols=235 Identities=14% Similarity=0.047 Sum_probs=151.8
Q ss_pred HhhhccChhHHHHHHHHhhhhhcccc------ccc-----------hhHHHHHHHHHHHC----CCC-ccHHHHHHHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCL------FFG-----------VGKAEMVVQEMKDM----GFA-RRTIYCYIMMIL 70 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~------~y~-----------~~~A~~~~~~m~~~----~~~-p~~~~y~~li~~ 70 (250)
.+...|++++|..+++......|... .+. .++|...+++..+. |.. ....+++.+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45568999999999998665533221 111 78888888876542 211 112346777788
Q ss_pred HhhcCChhhHHHHHHHHHhc----CCC--CC-chhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCc--cHHHHHHH--
Q 037164 71 NYLTGNREKIDALMLEMEEK----SIN--GD-QFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVL--DFNLLAVL-- 138 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~----gi~--p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~--~~~~~~~l-- 138 (250)
+...|++++|...+++.... +-. |. ..++..+-..+...|++++|...+++.... +...+ ...++..+
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999886542 222 32 345667778899999999999999986532 12222 12333333
Q ss_pred -------HHHHHHHHHHHHhhhh-ccCCc-hh---------hhcchhHHHHHHHHHhccCC--CC-----hhhHHHHHHH
Q 037164 139 -------LYMAMTMLKKSEGLIA-TKRNS-SN---------AFELKDQLYRIWKHYGQTRK--VF-----NKGYMTMMGL 193 (250)
Q Consensus 139 -------~~~a~~~~~~~~~~~~-~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~li~~ 193 (250)
.++|...+++...... +.... .. .+...++..++...++.... +. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 7888888888763321 11110 00 01155666677666655433 11 1245677788
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCCCC-cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 194 LLKLDDVKGAEKTLRNWTSK----NLPYDF-GLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 194 ~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+...|+.++|...+++.... +.+++. .++..+-.++...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999987532 222222 2566677888899999999999988764
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.46 E-value=4.1e-05 Score=58.70 Aligned_cols=178 Identities=6% Similarity=-0.135 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFN 133 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~ 133 (250)
.+...+-.+-..+.+.|++++|...|+...+.. |+ ...+..+-.+|.+.|++++|...|++.... |+.+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566666677777788888888888776642 32 455666677777788888888888776542 11111111
Q ss_pred HHHHH-----------------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 037164 134 LLAVL-----------------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLK 196 (250)
Q Consensus 134 ~~~~l-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 196 (250)
.+..+ .++|...|++..... |+... .......+..+... ....+..+-..|.+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~--~~~a~~~~~~~~~~-------~~~~~~~la~~~~~ 160 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHEL--VDDATQKIRELRAK-------LARKQYEAARLYER 160 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTT--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchh--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 11111 222333333322211 11110 00000000000000 01113556788999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhc----------CChhHHHHHHHHHHhc
Q 037164 197 LDDVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKN----------GLLEKAQSLINHAETK 248 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 248 (250)
.|++++|...|++........ ....+..+..+|... |++++|...++++.+.
T Consensus 161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999999999988543211 234677788888866 8899999999988753
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.45 E-value=4.3e-06 Score=65.83 Aligned_cols=205 Identities=11% Similarity=-0.037 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCCh
Q 037164 42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDI 112 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~ 112 (250)
.++|..+|++..+.+ +.+ ...|..+...|...|++++|.+++++..+. +-.| ...++..+...|...|++
T Consensus 21 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 99 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 99 (338)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCH
Confidence 789999999998863 223 467889999999999999999999886432 2222 256788888999999999
Q ss_pred hHHHHHHHHHhhCCCCCcc----HHHHHHH-----------------------------HHHHHHHHHHHHhhhhccCCc
Q 037164 113 HGMDKIINMTESNPQMVLD----FNLLAVL-----------------------------LYMAMTMLKKSEGLIATKRNS 159 (250)
Q Consensus 113 ~~a~~~~~~m~~~~g~~~~----~~~~~~l-----------------------------~~~a~~~~~~~~~~~~~~~~~ 159 (250)
++|.+.+++......-.++ ..++..+ +++|.+.+++...........
T Consensus 100 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~ 179 (338)
T 3ro2_A 100 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 9999999886432011111 1122222 134555555543211110000
Q ss_pred h---hhhc-------chhHHHHHHHHHhccC-------C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-
Q 037164 160 S---NAFE-------LKDQLYRIWKHYGQTR-------K--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYD- 218 (250)
Q Consensus 160 ~---~~~~-------~~~~~~~~~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~- 218 (250)
. ..+. ..++.+++.+.++... . .....+..+...+...|++++|...+++...... ..+
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 0 0111 4555555555554431 1 1124778888999999999999999998763211 111
Q ss_pred ---CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 219 ---FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 219 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..++..+...|...|++++|...+++..+
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55778888999999999999999988764
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.43 E-value=1.6e-05 Score=73.66 Aligned_cols=206 Identities=12% Similarity=0.034 Sum_probs=140.8
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcc-ccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLE 86 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 86 (250)
..+-..|.+++|..+|++....... ...+. +++|.++.++. -+..+|..+-.++...|++++|...|..
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566789999999999987543211 11121 77787777755 2468999999999999999999999964
Q ss_pred HHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhc-
Q 037164 87 MEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFE- 164 (250)
Q Consensus 87 m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~- 164 (250)
. -|...|..++.+|.+.|++++|.+.+...++. .-.|...+.-.. +.+. +-+.+++.-...... . .|.
T Consensus 1131 --A----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~~e~~Idt~LafaYAKl-~rleele~fI~~~n~-a-d~~~ 1200 (1630)
T 1xi4_A 1131 --A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKT-NRLAELEEFINGPNN-A-HIQQ 1200 (1630)
T ss_pred --c----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cccccccHHHHHHHHhh-cCHHHHHHHHhCCCH-H-HHHH
Confidence 2 47888999999999999999999999987664 312211121111 1111 111112211111111 1 111
Q ss_pred ------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164 165 ------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA 238 (250)
Q Consensus 165 ------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 238 (250)
..+..+.+...+... ..|..+...|++.|++++|.+.+++.. +..+|.-+-.+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHH
Confidence 666666666666653 478899999999999999999998763 568899999999999999999
Q ss_pred HHHHHH
Q 037164 239 QSLINH 244 (250)
Q Consensus 239 ~~~~~~ 244 (250)
..+...
T Consensus 1270 ~~cgl~ 1275 (1630)
T 1xi4_A 1270 QMCGLH 1275 (1630)
T ss_pred HHHHHh
Confidence 887644
No 80
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.43 E-value=1.8e-06 Score=70.72 Aligned_cols=205 Identities=10% Similarity=-0.036 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHHCCCCccH----HHHHHHHHHHhhcCChhhHHHHHHHHHhc----CC-CCCchhHhhhHHHHHhcCCh
Q 037164 42 VGKAEMVVQEMKDMGFARRT----IYCYIMMILNYLTGNREKIDALMLEMEEK----SI-NGDQFTLGIRPSAYAAASDI 112 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi-~p~~~ty~~li~~~~~~~~~ 112 (250)
.++|...|++..+.+ +.+. .+|..+..+|...|++++|.+.+++..+. +- .....+|..+-..|...|++
T Consensus 64 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence 899999999998863 2232 57889999999999999999999986543 11 22446788888999999999
Q ss_pred hHHHHHHHHHhhC---CCCCcc-HHHHHHH--------------------------HHHHHHHHHHHHhhhhc-cC-Cc-
Q 037164 113 HGMDKIINMTESN---PQMVLD-FNLLAVL--------------------------LYMAMTMLKKSEGLIAT-KR-NS- 159 (250)
Q Consensus 113 ~~a~~~~~~m~~~---~g~~~~-~~~~~~l--------------------------~~~a~~~~~~~~~~~~~-~~-~~- 159 (250)
++|.+.+++.... .+-.|. ..++..+ +++|.+.+.+....... .. ..
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999886432 011111 2222222 13455555554321110 00 00
Q ss_pred hhhhc-------chhHHHHHHHHHhccCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CC
Q 037164 160 SNAFE-------LKDQLYRIWKHYGQTRK-----VF----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-----YD 218 (250)
Q Consensus 160 ~~~~~-------~~~~~~~~~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~ 218 (250)
...+. ..++.+++.+.++.... .+ ...+..+...|...|++++|...+++....... ..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 00111 55555555555544321 11 237788889999999999999999887642111 12
Q ss_pred CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 219 FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..++..+...|...|++++|..++++..+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788888999999999999999988764
No 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.42 E-value=5.5e-06 Score=71.17 Aligned_cols=146 Identities=6% Similarity=-0.063 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
++|.+.|++..+.. +.+...|..+-..|.+.|++++|.+.+++..+.. +.+...|..+-.+|...|++++|.+.+++.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45666666665542 3456788888888888999999999998776642 224677888888888999999999888887
Q ss_pred hhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhc--
Q 037164 123 ESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKL-- 197 (250)
Q Consensus 123 ~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~-- 197 (250)
... -+.+...+..+ +. .|...++.+++.+.++.. .+.+...+..+...+...
T Consensus 84 l~~--~p~~~~~~~~l---a~------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 84 SDA--APEHPGIALWL---GH------------------ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHH--CTTCHHHHHHH---HH------------------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred Hhc--CCCCHHHHHHH---HH------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 543 11122222111 00 111222222222222221 122345666667777777
Q ss_pred -CCHHHHHHHHHHHHhC
Q 037164 198 -DDVKGAEKTLRNWTSK 213 (250)
Q Consensus 198 -g~~~~A~~~~~~m~~~ 213 (250)
|+.++|...+++....
T Consensus 141 ~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc
Confidence 7777777777776643
No 82
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=1.1e-05 Score=59.78 Aligned_cols=127 Identities=10% Similarity=-0.027 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM 141 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~ 141 (250)
..+..+-..+...|++++|.+.|++. +.|+...|..+..+|.+.|++++|.+.+++.... . |
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~----------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D--K----------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--T-----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--c-----------
Confidence 44566677888899999999999855 4678888999999999999999999998877543 0 1
Q ss_pred HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--
Q 037164 142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF-- 219 (250)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 219 (250)
.+...|..+-.+|.+.|++++|...|++..... +.+.
T Consensus 69 ----------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 107 (213)
T 1hh8_A 69 ----------------------------------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLI 107 (213)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEE
T ss_pred ----------------------------------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHH
Confidence 112345566667777777777777777766432 1122
Q ss_pred --------------cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 220 --------------GLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 220 --------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+..+..+|.+.|++++|...|++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566777777777777777777777654
No 83
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.41 E-value=2.1e-05 Score=72.94 Aligned_cols=203 Identities=9% Similarity=0.017 Sum_probs=136.6
Q ss_pred hccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164 16 EVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM 84 (250)
Q Consensus 16 k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 84 (250)
..+++++|.++.+++.. +.+|. +++|.+-|.+. -|...|..++.+|.+.|++++|.+++
T Consensus 1088 ~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55667777766665532 23333 88898888663 57789999999999999999999999
Q ss_pred HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHHHHHHHhhhhccCC
Q 037164 85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRN 158 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~ 158 (250)
..-++.. +++...+.+..+|++.+++++...++ .. .-.++....... +++|..+|..........
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~~-~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA-- 1228 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFI----NG-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA-- 1228 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----hC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHH--
Confidence 9655543 55544556999999999988655553 22 111222222222 888888888864222100
Q ss_pred chhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164 159 SSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 238 (250)
. +|.+.++++.+.+..+.. .+..+|..+-.+|...|++..|....... ..++..+..++..|.+.|.+++|
T Consensus 1229 -~-tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A 1229 -S-TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred -H-HHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHH
Confidence 1 444777888888888766 45577777777777778777777766432 23455566777788888888888
Q ss_pred HHHHHHHH
Q 037164 239 QSLINHAE 246 (250)
Q Consensus 239 ~~~~~~m~ 246 (250)
..+++..+
T Consensus 1300 I~LlE~aL 1307 (1630)
T 1xi4_A 1300 ITMLEAAL 1307 (1630)
T ss_pred HHHHHHHh
Confidence 88776653
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.41 E-value=3.6e-06 Score=60.73 Aligned_cols=165 Identities=7% Similarity=-0.031 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM 141 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~ 141 (250)
..+..+...+.+.|++++|...+++..+. -+.+...+..+-..+.+.|++++|...+++.... .|+....... .
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~-~- 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLI-A- 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHH-H-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHH-H-
Confidence 34556677888999999999999976543 1225677888899999999999999999987543 2233222111 0
Q ss_pred HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCc
Q 037164 142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFG 220 (250)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~ 220 (250)
..... .. . ... +.. ..++..-...+.+...+..+-..+...|++++|...|++.......+ +..
T Consensus 81 ~~~~~---~~-~--~~~--------~a~-~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 81 KLELH---QQ-A--AES--------PEL-KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp HHHHH---HH-H--TSC--------HHH-HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred HHHHH---hh-c--ccc--------hHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 00000 00 0 000 011 11111112233445788889999999999999999999988654432 456
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+..+...|...|+.++|...+++.+.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999998764
No 85
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.40 E-value=1.1e-05 Score=65.94 Aligned_cols=178 Identities=7% Similarity=-0.111 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN-REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.++|+..|++..+.+ +-+..+|+.+-.++.+.|+ +++|+..|++..+.+- -+...|+.+-.++.+.|++++|...|+
T Consensus 113 ~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~ 190 (382)
T 2h6f_A 113 SERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIA 190 (382)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred hHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 688889999888763 4467888888888999996 9999999998777522 256788888888999999999999999
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHh-
Q 037164 121 MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLK- 196 (250)
Q Consensus 121 ~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~- 196 (250)
++... -+-+...|..+ +. ++...++.+++.+.++.. .+.+...|+.+-..+.+
T Consensus 191 kal~l--dP~~~~a~~~l---g~------------------~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 191 DILNQ--DAKNYHAWQHR---QW------------------VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHH--CTTCHHHHHHH---HH------------------HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHh--CccCHHHHHHH---HH------------------HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 87653 12233333222 00 111112222222333222 22445788888888888
Q ss_pred cCCHHHH-----HHHHHHHHhCCCCCCCcchHHHHHHHHhcC--ChhHHHHHHHHH
Q 037164 197 LDDVKGA-----EKTLRNWTSKNLPYDFGLPSSLIDAHCKNG--LLEKAQSLINHA 245 (250)
Q Consensus 197 ~g~~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m 245 (250)
.|..++| ...|++.... .+-+...|+.+...|...| ++++|...+.++
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 6665777 4778877743 2335678888888899888 689999888776
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.38 E-value=2.4e-05 Score=69.18 Aligned_cols=150 Identities=9% Similarity=0.012 Sum_probs=90.4
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI 92 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi 92 (250)
+|.+.|++++|.+.|++..+.. +-+..+|+.|-.+|.+.|++++|.+.|++..+.
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~-----------------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-- 72 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVF-----------------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 72 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4555666666666666655441 234567777777777777777777777766553
Q ss_pred CC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHH
Q 037164 93 NG-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY 170 (250)
Q Consensus 93 ~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (250)
.| +...|+.+-.+|.+.|++++|.+.|++..+. .|+ ...+..+ . . .|...++.+
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~L--------g------------~-~~~~~g~~~ 128 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNL--------A------------S-IHKDSGNIP 128 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH--------H------------H-HHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH--------H------------H-HHHHcCCHH
Confidence 34 3466777777777777777777777776532 122 2222222 0 0 111223333
Q ss_pred HHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 171 RIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
++.+.+++. .+.+...|..+...|...|++++|.+.+++..
T Consensus 129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 333333222 11234678888999999999999988888754
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.37 E-value=5.3e-05 Score=56.72 Aligned_cols=110 Identities=9% Similarity=-0.095 Sum_probs=83.3
Q ss_pred hHhhhccChhHHHHHHHHhhhhh--ccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLL--RQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE 78 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~--~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 78 (250)
..+.+.|++++|.+.|+...... ++...+. .++|...|++..+.+ +.+..+|..+-.+|...|+++
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHH
Confidence 35677899999999999877764 3333333 788888888888763 345678888888889999999
Q ss_pred hHHHHHHHHHhcCCCCC-c-------hhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 79 KIDALMLEMEEKSINGD-Q-------FTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~-~-------~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+|.+.+++..+. .|+ . ..|..+-..+...|++++|.+.|++...
T Consensus 94 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 94 EYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 999999887664 233 3 3467777888888899999999988864
No 88
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.36 E-value=7.6e-06 Score=68.84 Aligned_cols=182 Identities=8% Similarity=0.015 Sum_probs=128.1
Q ss_pred hhHHHHHHHHhhhhhcc-ccccc-----------h-hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164 20 VEQAEIYFDNISKLLRQ-CLFFG-----------V-GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLE 86 (250)
Q Consensus 20 ~~~a~~~f~~~~~~~~~-~~~y~-----------~-~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 86 (250)
++++.+.++......++ ...+. . ++|++.|++..+.. +.+..+|..+-.+|.+.|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566666655544332 22222 7 99999999998863 44588999999999999999999999998
Q ss_pred HHhcCCCCCchhHhhhHHHHHhc---------CChhHHHHHHHHHhhCCCCCccHHHHHHH-----------------HH
Q 037164 87 MEEKSINGDQFTLGIRPSAYAAA---------SDIHGMDKIINMTESNPQMVLDFNLLAVL-----------------LY 140 (250)
Q Consensus 87 m~~~gi~p~~~ty~~li~~~~~~---------~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----------------~~ 140 (250)
..+. .|+...|..+-..|... |++++|.+.+++.... .+.+...|..+ ++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7764 57888888999999999 9999999999998653 12233333333 45
Q ss_pred HHHHHHHHHHhhhhc---cCCchhhhc-------chhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164 141 MAMTMLKKSEGLIAT---KRNSSNAFE-------LKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTL 207 (250)
Q Consensus 141 ~a~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 207 (250)
+|.+.|++..... | .... .|. ..++.+++.+.++... +.+...+..+-..+...|+.++|...+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPD--LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777666432 3 2221 332 6677777777776643 234467888889999999999998765
Q ss_pred HH
Q 037164 208 RN 209 (250)
Q Consensus 208 ~~ 209 (250)
++
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.35 E-value=1.7e-05 Score=62.09 Aligned_cols=169 Identities=8% Similarity=-0.028 Sum_probs=118.1
Q ss_pred CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
++.+...+..+-..+.+.|++++|...+++..+. .| +...+..+...+.+.|++++|...+++.... .|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQ 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHH
Confidence 3556677888888899999999999999987764 34 5578888899999999999999999987542 3443321
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164 136 AVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 136 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 215 (250)
... .+..+... .. .. ..+ ..++..-...+.+...+..+-..+...|+.++|...|.+......
T Consensus 188 ~~~--~~~~l~~~----~~-~~---------~a~-~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 188 GLV--AQIELLXQ----AA-DT---------PEI-QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHH--HHHHHHHH----HT-SC---------HHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHH--HHHHHHhh----cc-cC---------ccH-HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 111 00101000 00 00 011 111111122334557788899999999999999999999986533
Q ss_pred C-CCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 216 P-YDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 216 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
. .+...+..|...|...|+.++|...+++.+.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2 2367899999999999999999999988664
No 90
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.33 E-value=1.8e-05 Score=61.99 Aligned_cols=159 Identities=9% Similarity=-0.074 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHCC-CCccH----HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-C----chhHhhhHHHHHhcCC
Q 037164 42 VGKAEMVVQEMKDMG-FARRT----IYCYIMMILNYLTGNREKIDALMLEMEEKSING-D----QFTLGIRPSAYAAASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~-~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~----~~ty~~li~~~~~~~~ 111 (250)
.++|..++++..+.. ..|+. ..+..+...|...|++++|...++...+..... + ..+|+.+-..|...|+
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 170 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY 170 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC
Confidence 678888888876642 22332 234456677788889999999999887743332 2 2268888889999999
Q ss_pred hhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164 112 IHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM 191 (250)
Q Consensus 112 ~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 191 (250)
+++|...|++.... ++.. +... .....+|..+.
T Consensus 171 ~~~A~~~~~~al~~--------------------~~~~-----~~~~----------------------~~~~~~~~nlg 203 (293)
T 3u3w_A 171 LKKGIDLFEQILKQ--------------------LEAL-----HDNE----------------------EFDVKVRYNHA 203 (293)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHS-----SCCH----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------------HHhc-----ccch----------------------hHHHHHHHHHH
Confidence 99999998887542 0000 0010 01134678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC-CcchHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSK----NLPYD-FGLPSSLIDAHCKNGL-LEKAQSLINHAET 247 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 247 (250)
..|.+.|++++|...+++.... +..+. ..+|..+-..|.+.|+ +++|...+++..+
T Consensus 204 ~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999999999886532 22222 4578888889999995 5999999888764
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=1.8e-05 Score=62.47 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=52.1
Q ss_pred ccChhHHHHHHHHhhhhhcccccc--c--hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFF--G--VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-- 90 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y--~--~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-- 90 (250)
.|++++|.+++++..+..+.. .| . .++|...|++. ...|...|++++|.+.|.+..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~ 67 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHA 67 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467778888887776653321 11 1 44454444443 44566677777777776654332
Q ss_pred --CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 91 --SING-DQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 91 --gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
|-.+ -..+|+.+...|.+.|++++|...|++.
T Consensus 68 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1100 1235666667777777777777777664
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.30 E-value=2.2e-05 Score=63.73 Aligned_cols=205 Identities=10% Similarity=-0.057 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCCC-chhHhhhHHHHHhcCCh
Q 037164 42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK----SINGD-QFTLGIRPSAYAAASDI 112 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p~-~~ty~~li~~~~~~~~~ 112 (250)
.++|...|++..+.+ +.+ ..+|..+...|...|++++|...+++.... +-.|. ..+|..+...|...|++
T Consensus 25 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence 789999999998863 223 367888899999999999999999986442 22222 45678888999999999
Q ss_pred hHHHHHHHHHhhCCCCCcc----HHHHHHH-----------------------------HHHHHHHHHHHHhhhhccCCc
Q 037164 113 HGMDKIINMTESNPQMVLD----FNLLAVL-----------------------------LYMAMTMLKKSEGLIATKRNS 159 (250)
Q Consensus 113 ~~a~~~~~~m~~~~g~~~~----~~~~~~l-----------------------------~~~a~~~~~~~~~~~~~~~~~ 159 (250)
++|...+++......-.++ ..++..+ +++|.+.+.+...........
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999876532000011 1122222 133444444433211111000
Q ss_pred h---hhhc-------chhHHHHHHHHHhccCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-
Q 037164 160 S---NAFE-------LKDQLYRIWKHYGQTRK-----VF----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF- 219 (250)
Q Consensus 160 ~---~~~~-------~~~~~~~~~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~- 219 (250)
. ..+. ..++.+++.+.++.... ++ ...+..+...|...|++++|...+++..........
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 0 0111 44444444444433211 11 135666667777777777777777776643222111
Q ss_pred ----cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 220 ----GLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 220 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.++..+...|...|++++|...+++..+
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1455666677777777777777777654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.29 E-value=2.2e-05 Score=61.48 Aligned_cols=62 Identities=6% Similarity=-0.077 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG------LPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.+++.+...+.+.|++++|...|++........... .|..+..+|...|++++|...+++..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666677777777777777666433222111 34555556666677777766666543
No 94
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.24 E-value=0.00014 Score=61.85 Aligned_cols=164 Identities=7% Similarity=-0.006 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+|..+|++..+.-.+.+...|..+...+.+.|++++|..+|+...+ +.|+. ..|..+...+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7899999988632345688999999999999999999999999887 45654 4799999999999999999999999
Q ss_pred HhhCCCCCccHHHHHHH--------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC---C--
Q 037164 122 TESNPQMVLDFNLLAVL--------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR---K-- 181 (250)
Q Consensus 122 m~~~~g~~~~~~~~~~l--------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~-- 181 (250)
....+...+........ .++|..+|++..... |+... .+. ..++.+++...++... +
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~--~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH--HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH--HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 87652322222221111 678899998887543 44331 332 5666777766665542 2
Q ss_pred CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 182 VF--NKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 182 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
|. ...|...+....+.|+.+.+..+++++..
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 24788888888999999999999998874
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.16 E-value=5.9e-05 Score=53.06 Aligned_cols=130 Identities=13% Similarity=0.003 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY 140 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~ 140 (250)
...+..+...+...|++++|...|+...+.. +.+..+|..+..++...|++++|.+.+++.... . |
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~-~---------- 78 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--D-K---------- 78 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-T----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-c----------
Confidence 4567778888899999999999999877642 335778888888999999999999988877543 0 1
Q ss_pred HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220 (250)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 220 (250)
.+...|..+...+...|++++|...|++..... +.+..
T Consensus 79 -----------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 116 (166)
T 1a17_A 79 -----------------------------------------KYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKD 116 (166)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHH
Confidence 112335556666777777777777777766432 22333
Q ss_pred chH--HHHHHHHhcCChhHHHHHHHHHH
Q 037164 221 LPS--SLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 221 ~~~--~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.+. .+...+.+.|++++|...+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 117 AKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 342 23333666677777777776543
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.15 E-value=7.8e-05 Score=58.36 Aligned_cols=202 Identities=14% Similarity=-0.046 Sum_probs=120.1
Q ss_pred ChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHC----CCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 19 GVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDM----GFARR-TIYCYIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 19 ~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~----~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
++++|...|...-.......- .++|...|++..+. |-+++ ..+|+.+-.+|.+.|++++|...+++..+..-.
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKE--LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 588899988876432111111 56666666665442 32222 578999999999999999999999876543111
Q ss_pred -CC----chhHhhhHHHHHhc-CChhHHHHHHHHHhhC-C--CCCcc-HHHHHHH---------HHHHHHHHHHHHhhhh
Q 037164 94 -GD----QFTLGIRPSAYAAA-SDIHGMDKIINMTESN-P--QMVLD-FNLLAVL---------LYMAMTMLKKSEGLIA 154 (250)
Q Consensus 94 -p~----~~ty~~li~~~~~~-~~~~~a~~~~~~m~~~-~--g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~ 154 (250)
.+ ..+|+.+-..|... |++++|...|++.... + +-.+. ..++..+ +++|...|++......
T Consensus 110 ~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 11 35788888999996 9999999999987542 0 11100 1222222 4444444444332211
Q ss_pred ccCCchhhhcchhHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---c---chHHHHH
Q 037164 155 TKRNSSNAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF---G---LPSSLID 227 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~---~~~~li~ 227 (250)
..... ... ...|..+..++...|++++|...|++... +.|+. . .+..++.
T Consensus 190 -~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~ 246 (292)
T 1qqe_A 190 -GNRLS--------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLID 246 (292)
T ss_dssp -SCTTT--------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHH
T ss_pred -cCCcc--------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHH
Confidence 11000 000 12466777888899999999999988763 23321 1 2344556
Q ss_pred HHH--hcCChhHHHHHHHHH
Q 037164 228 AHC--KNGLLEKAQSLINHA 245 (250)
Q Consensus 228 ~~~--~~g~~~~a~~~~~~m 245 (250)
+|. ..+++++|...|+++
T Consensus 247 ~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 247 AVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHTTCTTTHHHHHHHHTTS
T ss_pred HHHcCCHHHHHHHHHHhccC
Confidence 664 346677787777654
No 97
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=5.7e-05 Score=50.11 Aligned_cols=114 Identities=11% Similarity=-0.002 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY 140 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~ 140 (250)
..+|..+...+.+.|++++|.+++++..+.. +.+..++..+...+.+.|++++|..+++++... . |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~--~---------- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D--P---------- 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--T----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C--C----------
Confidence 5778888889999999999999999887752 345678888889999999999999998887542 0 0
Q ss_pred HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220 (250)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 220 (250)
.+...+..+...+...|++++|...++++.... +.+..
T Consensus 75 -----------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 112 (125)
T 1na0_A 75 -----------------------------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAE 112 (125)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHH
Confidence 123346677788888899999999998887542 22334
Q ss_pred chHHHHHHHH
Q 037164 221 LPSSLIDAHC 230 (250)
Q Consensus 221 ~~~~li~~~~ 230 (250)
.+..+-..+.
T Consensus 113 ~~~~l~~~~~ 122 (125)
T 1na0_A 113 AKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.14 E-value=5.2e-05 Score=59.13 Aligned_cols=78 Identities=8% Similarity=-0.121 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
.++|...|++..+.. +.+...|..+-.+|.+.|++++|.+.++...+. .| +...|..+-.+|...|++++|.+.|+
T Consensus 20 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 20 YPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666665542 234555666666666666666666666654432 23 33455555566666666666666665
Q ss_pred HH
Q 037164 121 MT 122 (250)
Q Consensus 121 ~m 122 (250)
+.
T Consensus 97 ~a 98 (281)
T 2c2l_A 97 RA 98 (281)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.12 E-value=4.7e-05 Score=58.36 Aligned_cols=164 Identities=8% Similarity=-0.031 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CC-CchhHhhhHHHHHh--------
Q 037164 42 VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NG-DQFTLGIRPSAYAA-------- 108 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p-~~~ty~~li~~~~~-------- 108 (250)
.++|...|++..+.. +.+ ...+..+-.+|.+.|++++|...|+...+..- .| ....+..+-.++.+
T Consensus 31 ~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 31 YDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp HHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred HHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence 455555555554432 222 56777788888888888888888888776421 11 23456666777777
Q ss_pred cCChhHHHHHHHHHhhC-CCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CC--
Q 037164 109 ASDIHGMDKIINMTESN-PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VF-- 183 (250)
Q Consensus 109 ~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 183 (250)
.|++++|...|++.... |+.......... +......+.+..-.. .. .|...++..++...++.... |+
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~-~~~~~~~~~~~~~~l---a~---~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHELVDDATQK-IRELRAKLARKQYEA---AR---LYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCTTHHHHHHH-HHHHHHHHHHHHHHH---HH---HHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred chhHHHHHHHHHHHHHHCcCchhHHHHHHH-HHHHHHHHHHHHHHH---HH---HHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 88888888888887543 222111111111 111111111110000 00 23344444455444444311 22
Q ss_pred --hhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 037164 184 --NKGYMTMMGLLLKL----------DDVKGAEKTLRNWTSK 213 (250)
Q Consensus 184 --~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 213 (250)
...+..+..+|.+. |++++|...|++....
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 24566666777765 8889999999998753
No 100
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.12 E-value=5.6e-05 Score=59.13 Aligned_cols=158 Identities=8% Similarity=-0.124 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHCCCC-cc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC---CCC--chhHhhhHHHHHhcCC
Q 037164 42 VGKAEMVVQEMKDMGFA-RR----TIYCYIMMILNYLTGNREKIDALMLEMEEKSI---NGD--QFTLGIRPSAYAAASD 111 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~-p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi---~p~--~~ty~~li~~~~~~~~ 111 (250)
.++|.+.+++..+..-. ++ ...+..+...+...|++++|.+.+....+... .+. ..+|+.+-..|...|+
T Consensus 91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 170 (293)
T 2qfc_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY 170 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCC
Confidence 77888888877664321 11 12344455667788899999998887664321 111 3478888888899999
Q ss_pred hhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164 112 IHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM 191 (250)
Q Consensus 112 ~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 191 (250)
+++|...+++.... ++ ..+... . ....+|+.+.
T Consensus 171 ~~~A~~~~~kal~~--------------------~~-----~~~~~~-~---------------------~~~~~~~nlg 203 (293)
T 2qfc_A 171 LKKGIDLFEQILKQ--------------------LE-----ALHDNE-E---------------------FDVKVRYNHA 203 (293)
T ss_dssp HHHHHHHHHHHHHH--------------------HH-----HSCCCH-H---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------------HH-----hcCccc-c---------------------chHHHHHhHH
Confidence 99998888877532 00 000110 0 0124577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC----CCC-CCcchHHHHHHHHhcCChhHH-HHHHHHHH
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKN----LPY-DFGLPSSLIDAHCKNGLLEKA-QSLINHAE 246 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 246 (250)
..|.+.|++++|...+++..... ... -..+|..+-..|.+.|++++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88889999999999988865321 111 145677788888889999998 77677654
No 101
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.10 E-value=0.00027 Score=61.97 Aligned_cols=199 Identities=9% Similarity=-0.037 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH-HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID-ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~-~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
.+..+|++.... ++-+...|-....-+.+.|+.++|. ++++.-... ++.+...|-..+...-+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667777665 4556777888888788889999996 999987653 4556666777888888999999999999988
Q ss_pred hhCC---------CCCcc------------HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------c
Q 037164 123 ESNP---------QMVLD------------FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------L 165 (250)
Q Consensus 123 ~~~~---------g~~~~------------~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~ 165 (250)
.... .. |+ ..+|... ++.|..+|.+......+... . .|. .
T Consensus 405 l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~-~-lyi~~A~lE~~ 481 (679)
T 4e6h_A 405 IDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-D-IYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT-H-HHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh-H-HHHHHHHHHHH
Confidence 6530 11 21 1123222 77888999888754222222 1 333 2
Q ss_pred h-hHHHHHHHHHhc---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhcCChhHHH
Q 037164 166 K-DQLYRIWKHYGQ---TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 166 ~-~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 239 (250)
. ++.+++.++++. ..+.+...|...+......|+.+.|..+|+........+ ....|...++--.+.|+.+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 223444444433 334455677788888888999999999999988543322 3467888998889999999999
Q ss_pred HHHHHHHh
Q 037164 240 SLINHAET 247 (250)
Q Consensus 240 ~~~~~m~~ 247 (250)
.+.+++.+
T Consensus 562 ~v~~R~~~ 569 (679)
T 4e6h_A 562 TLEKRFFE 569 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 102
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.08 E-value=0.0003 Score=58.72 Aligned_cols=181 Identities=7% Similarity=-0.039 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc----CChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 63 YCYIMMILNYLTG---NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA----SDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 63 ~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~----~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
.+..|-..|...| +.++|.+.|+.-.+.|- ++...+..|-..|... +++++|.++|++.. . |........
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-GYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-GSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-CCHHHHHHH
Confidence 5555666666666 66666666666555542 2333334444444433 56666666666655 2 554444443
Q ss_pred HHH---------HHHHHHHHHHHHhhhhccCCc--hhhhc----chhHHHHHHHHHhccCCCChhhHHHHHHHHHh----
Q 037164 136 AVL---------LYMAMTMLKKSEGLIATKRNS--SNAFE----LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLK---- 196 (250)
Q Consensus 136 ~~l---------~~~a~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 196 (250)
..+ .++|.+.|++......+.... ...|. ...+..++.+.++.....+...+..+-..|..
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCC
Confidence 332 456666666555222111100 00111 12266666666655552223444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 037164 197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKAQSLINHAETKK 249 (250)
Q Consensus 197 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 249 (250)
..+.++|..+|++....| +......|-..|.. ..++++|...++...+.|
T Consensus 335 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 236777777777766544 24455555555554 346777777777776665
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.06 E-value=0.00031 Score=51.96 Aligned_cols=176 Identities=10% Similarity=-0.070 Sum_probs=102.7
Q ss_pred HhhhccChhHHHHHHHHhhhhhcc-ccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQ-CLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS 91 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 91 (250)
.+.+.|++++|...|+......|+ +..|. ..-...........++.+-.+|.+.|++++|...|++..+..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYY--------WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHH--------HHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHH--------HhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 455678888888888877665332 11211 100001111122334558889999999999999999887752
Q ss_pred CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHH
Q 037164 92 INGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYR 171 (250)
Q Consensus 92 i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (250)
+-+...|..+-.+|...|++++|.+.|++.... -+-+...+..+ +.-.+.. .......
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l---g~~~~~~----------------~~~~~~~ 142 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFL---GNYYYLT----------------AEQEKKK 142 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH---HHHHHHH----------------HHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHH---HHHHHHH----------------hHHHHHH
Confidence 236688899999999999999999999998653 12223333322 0000000 0011111
Q ss_pred HHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164 172 IWKHYGQTRKVFN--KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220 (250)
Q Consensus 172 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 220 (250)
+...++....++. ..+...-.++...|++++|...|++... ..|+..
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 2222222222222 2333344556678999999999999874 456543
No 104
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.06 E-value=0.0001 Score=52.84 Aligned_cols=111 Identities=5% Similarity=-0.017 Sum_probs=77.9
Q ss_pred HhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHH-HhhcCCh--
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMIL-NYLTGNR-- 77 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~~-- 77 (250)
.+...|++++|...|+......|+ ...|. .++|...|++..+.+ +.+...+..+..+ |...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356678888898888887666333 23333 788888888887753 3466777777777 7788888
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++|...++...+.+ +.+...|..+...|...|++++|...+++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88999988877652 224567777888888999999999999887654
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=6.9e-05 Score=50.16 Aligned_cols=121 Identities=15% Similarity=-0.032 Sum_probs=91.6
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
.+...+..+...+...|++++|.+.++...+.. +.+...|..+..++...|++++|.+.+++.... .|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~-------- 77 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DP-------- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT--------
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---Cc--------
Confidence 456778888899999999999999999877652 336678888889999999999999998877542 01
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD 218 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 218 (250)
.+...+..+...+.+.|++++|...|++..... +.+
T Consensus 78 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~ 113 (131)
T 2vyi_A 78 -------------------------------------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDN 113 (131)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred -------------------------------------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccc
Confidence 112346667778889999999999999887542 335
Q ss_pred CcchHHHHHHHHhcCCh
Q 037164 219 FGLPSSLIDAHCKNGLL 235 (250)
Q Consensus 219 ~~~~~~li~~~~~~g~~ 235 (250)
...+..+...+.+.|++
T Consensus 114 ~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 114 ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 66777777777777764
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.05 E-value=0.00013 Score=51.29 Aligned_cols=81 Identities=6% Similarity=-0.066 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+.+ +.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|.+.|++
T Consensus 52 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777777776653 4567788888888888999999999888877642 23567788888888889999999998888
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 130 al~ 132 (151)
T 3gyz_A 130 VIQ 132 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.05 E-value=8.9e-05 Score=49.14 Aligned_cols=82 Identities=11% Similarity=-0.034 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|.+.|+++.+. .+.+..++..+..+|.+.|++++|..+++++.+.. +.+..++..+...|...|++++|.+.+++
T Consensus 25 ~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 25 YDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34445555554443 23467788999999999999999999999988753 34677888999999999999999999998
Q ss_pred HhhC
Q 037164 122 TESN 125 (250)
Q Consensus 122 m~~~ 125 (250)
+...
T Consensus 103 ~~~~ 106 (125)
T 1na0_A 103 ALEL 106 (125)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.03 E-value=0.0012 Score=53.15 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHHCCCCccH----HHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCC----chhHhhhHHHHHhcCCh
Q 037164 42 VGKAEMVVQEMKDMGFARRT----IYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGD----QFTLGIRPSAYAAASDI 112 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~----~~ty~~li~~~~~~~~~ 112 (250)
.++|...+++.....-..+. .+++.+-..|...|++++|.+.+++.....- .++ ..+++.+-..+...|++
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 109 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 109 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH
Confidence 78899999998775311222 2567777889999999999999998654211 112 23356777889999999
Q ss_pred hHHHHHHHHHhhC---CCCC--cc-HHHHHHH---------HHHHHHHHHHHHhhhhccCC--chhhhc-------chhH
Q 037164 113 HGMDKIINMTESN---PQMV--LD-FNLLAVL---------LYMAMTMLKKSEGLIATKRN--SSNAFE-------LKDQ 168 (250)
Q Consensus 113 ~~a~~~~~~m~~~---~g~~--~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~--~~~~~~-------~~~~ 168 (250)
++|.+.+++.... .+.. |. ...+..+ +++|...+.+.......... ....+. ..++
T Consensus 110 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (373)
T 1hz4_A 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 189 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999886432 0222 32 2333333 88899888887633221111 000222 5566
Q ss_pred HHHHHHHHhccC----CCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCCh
Q 037164 169 LYRIWKHYGQTR----KVFN-KGYM-----TMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGLL 235 (250)
Q Consensus 169 ~~~~~~~~~~~~----~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~ 235 (250)
.+++...++... .++. ..+. .....+...|+.++|...+++.......+. ...+..+...+...|++
T Consensus 190 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 269 (373)
T 1hz4_A 190 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 269 (373)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH
Confidence 666666554431 1111 1222 233457799999999999998764322111 11356778889999999
Q ss_pred hHHHHHHHHHHh
Q 037164 236 EKAQSLINHAET 247 (250)
Q Consensus 236 ~~a~~~~~~m~~ 247 (250)
++|...+++..+
T Consensus 270 ~~A~~~l~~a~~ 281 (373)
T 1hz4_A 270 EPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 109
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.02 E-value=7.3e-05 Score=54.54 Aligned_cols=141 Identities=11% Similarity=-0.001 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHh----cCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEE----KSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL 134 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 134 (250)
...+++.+-..|...|++++|...+++... .|..| ...++..+-..|...|++++|.+.+++....
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------- 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL--------- 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence 456677777777778888888777776554 12222 2345666667777777777777777665432
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037164 135 LAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN 214 (250)
Q Consensus 135 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 214 (250)
++ ..++.. . .....+..+-..+...|++++|...+++.....
T Consensus 96 -----------~~-----~~~~~~-~---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 96 -----------LA-----SLPEDP-L---------------------AASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp -----------HH-----HSCCCH-H---------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------HH-----HcCccH-H---------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00 000000 0 012345566677777788888877777755221
Q ss_pred C-CCC----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 215 L-PYD----FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 215 ~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
. ..+ ..++..+-..|...|++++|...+++..+
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 138 QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0 111 22346667777778888888877776654
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.02 E-value=0.00012 Score=49.22 Aligned_cols=120 Identities=11% Similarity=-0.026 Sum_probs=87.4
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV 137 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 137 (250)
+.+...|..+...+.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|.+.+++.... .|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~------- 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EP------- 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CT-------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CC-------
Confidence 4566788888899999999999999999877642 236678888888999999999999988877542 00
Q ss_pred HHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164 138 LLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217 (250)
Q Consensus 138 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 217 (250)
.+...+..+-..+.+.|++++|...|++..... +.
T Consensus 82 --------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~ 116 (133)
T 2lni_A 82 --------------------------------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SS 116 (133)
T ss_dssp --------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GG
T ss_pred --------------------------------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CC
Confidence 122345667778888899999999998877432 22
Q ss_pred CCcchHHHHHHHHhcC
Q 037164 218 DFGLPSSLIDAHCKNG 233 (250)
Q Consensus 218 ~~~~~~~li~~~~~~g 233 (250)
+...+..+...+...|
T Consensus 117 ~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 117 CKEAADGYQRCMMAQY 132 (133)
T ss_dssp GTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhc
Confidence 4555666666665554
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.01 E-value=0.00011 Score=49.81 Aligned_cols=81 Identities=5% Similarity=-0.237 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|+..|++..+. -+.+..+|..+-.+|.+.|++++|...++...+.+ +.+...|..+-.+|...|++++|.+.|++
T Consensus 29 ~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 29 YPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444433 24467788888888888888888888888776642 22456788888888888888888888888
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 107 al~ 109 (126)
T 4gco_A 107 ALQ 109 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.00 E-value=8.7e-05 Score=54.73 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=59.6
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID 81 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 81 (250)
.+.+.|++++|.+.|++... ++...|. .++|...|++..+.. +.+...|..+-.+|.+.|++++|.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHH
Confidence 44556777777777766532 2222222 566666666655542 334555666666666666666666
Q ss_pred HHHHHHHhcCCCCCc----------------hhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 82 ALMLEMEEKSINGDQ----------------FTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~----------------~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+.|+...+.. +.+. ..|..+-.+|.+.|++++|.+.|++...
T Consensus 92 ~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 92 KDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666555431 1111 4555555666666666666666666543
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.98 E-value=4.4e-05 Score=67.15 Aligned_cols=170 Identities=10% Similarity=-0.041 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHH--------HCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh
Q 037164 42 VGKAEMVVQEMK--------DMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH 113 (250)
Q Consensus 42 ~~~A~~~~~~m~--------~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~ 113 (250)
.++|++.|++.. +. -+.+...+..+..+|.+.|++++|.+.+++..+.+ +.+...|..+-.+|...|+++
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 484 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYD 484 (681)
T ss_dssp HHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHH
Confidence 789999999987 43 34567889999999999999999999999887752 235678888999999999999
Q ss_pred HHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHH
Q 037164 114 GMDKIINMTESNPQMVL-DFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMG 192 (250)
Q Consensus 114 ~a~~~~~~m~~~~g~~~-~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 192 (250)
+|.+.|++.... .| +...+..+ +. ++..+.+ . ++ ...++..-...+.+...|..+-.
T Consensus 485 ~A~~~~~~al~l---~P~~~~~~~~l---g~-~~~~~g~-~-------------~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 485 SATKHFTEVLDT---FPGELAPKLAL---AA-TAELAGN-T-------------DE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHHHH---STTCSHHHHHH---HH-HHHHHTC-C-------------CT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCChHHHHHH---HH-HHHHcCC-h-------------HH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 999999997643 12 22222211 00 0111110 0 01 11111111223344578889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhH
Q 037164 193 LLLKLDDVKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEK 237 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 237 (250)
++.+.|+.++|...|++... ..| +...+..+..++...|+.++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC-------
T ss_pred HHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCCCCC
Confidence 99999999999999998763 334 35667777777777776333
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.98 E-value=4.3e-05 Score=67.20 Aligned_cols=171 Identities=12% Similarity=-0.016 Sum_probs=116.0
Q ss_pred hhccChhHHHHHHHHhh--------hhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164 15 FEVHGVEQAEIYFDNIS--------KLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT 74 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~--------~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~ 74 (250)
...|++++|.+.|+... ...|+ ...+. .++|.+.|++..+.+ +.+...|..+-.+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56899999999999887 43233 22332 899999999998763 45678999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Q 037164 75 GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIA 154 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~ 154 (250)
|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++ .+.|++.... -+.+...+..+ +
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~l---g------------ 541 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGL---A------------ 541 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHH---H------------
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHH---H------------
Confidence 99999999999877752 2256788999999999999999 9999987653 11122222111 0
Q ss_pred ccCCchhhhcchhHHHHHHHHHhccCC--CC-hhhHHHHHHHHHhcCCH-----HHHHHHHHHHH
Q 037164 155 TKRNSSNAFELKDQLYRIWKHYGQTRK--VF-NKGYMTMMGLLLKLDDV-----KGAEKTLRNWT 211 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~-----~~A~~~~~~m~ 211 (250)
. .|...++.+++.+.++.... |+ ...|..+..++...++. +...+..+...
T Consensus 542 -----~-~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 542 -----R-ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp -----H-HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred -----H-HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 0 33355666777777766544 44 36677777777777763 44444444443
No 115
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.97 E-value=0.00054 Score=57.14 Aligned_cols=94 Identities=12% Similarity=-0.047 Sum_probs=49.4
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhccccccc-----------h---hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V---GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG 75 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~---~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g 75 (250)
+-..+.+.|++++|.++|....+.. ++..+. . ++|...|++..+. ++..+..|-..+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 3446677899999999999886652 222222 3 8999999988764 5566777766555544
Q ss_pred -----ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC
Q 037164 76 -----NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111 (250)
Q Consensus 76 -----~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~ 111 (250)
++++|.++|+.-.+.|.. ..+..|-..|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPH 121 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCC
Confidence 778999999987776532 245555555554443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.96 E-value=0.00017 Score=61.94 Aligned_cols=107 Identities=7% Similarity=-0.042 Sum_probs=73.0
Q ss_pred ccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164 17 VHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM 84 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 84 (250)
.|++++|.+.|++.....|+ ...|. .++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999987766443 33333 899999999998863 456789999999999999999999999
Q ss_pred HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++..+.. +.+...|..+-.+|.+.|++++|.+.+++....
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9887752 235678899999999999999999999998653
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.96 E-value=0.00055 Score=54.02 Aligned_cols=198 Identities=9% Similarity=-0.048 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC--ChhhHHHHHHHHHhcCCCCCchhHhhhHHHH----Hhc---CChh
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG--NREKIDALMLEMEEKSINGDQFTLGIRPSAY----AAA---SDIH 113 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~----~~~---~~~~ 113 (250)
++|+.+++++...+ +-+..+||.--.++...| ++++++++++.+...+ +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666665542 233455666666666666 6677777776665542 12344454433333 333 5666
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHH---------HH--HHHHHHHHHHhhhhccCCchhhhc-------chh------HH
Q 037164 114 GMDKIINMTESNPQMVLDFNLLAVL---------LY--MAMTMLKKSEGLIATKRNSSNAFE-------LKD------QL 169 (250)
Q Consensus 114 ~a~~~~~~m~~~~g~~~~~~~~~~l---------~~--~a~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~ 169 (250)
++.++++.+... -+-+...|+.- .+ ++++.+.++.... |... + .|+ ..+ ..
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~-s-AW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNN-S-AWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhccccchhhhH
Confidence 677766666542 22233333333 23 5555555555332 2222 1 333 222 25
Q ss_pred HHHHHHHhcc---CCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164 170 YRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDV-KGAEKTLRNWTSKN--LPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243 (250)
Q Consensus 170 ~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 243 (250)
++.++..... .+.+...|+.+-..+.+.|+. +.+..+..+....+ .+.++..+..+...|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5566665543 235558888888888888874 44556777665432 24467788999999999999999999999
Q ss_pred HHHh
Q 037164 244 HAET 247 (250)
Q Consensus 244 ~m~~ 247 (250)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.95 E-value=0.00012 Score=58.59 Aligned_cols=147 Identities=8% Similarity=-0.096 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----------------chhHhhhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----------------QFTLGIRPSA 105 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----------------~~ty~~li~~ 105 (250)
+++|.+.|+...+.. +-+...|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+
T Consensus 129 ~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 129 FEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 455555554433321 124678888999999999999999999987764 344 3788999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChh
Q 037164 106 YAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK 185 (250)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (250)
|.+.|++++|.+.+++.... .|+ +..
T Consensus 206 ~~~~g~~~~A~~~~~~al~~---~p~---------------------------------------------------~~~ 231 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL---DSN---------------------------------------------------NEK 231 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTT---------------------------------------------------CHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCC---------------------------------------------------cHH
Confidence 99999999999999887643 111 223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH-HHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA-QSLINHAE 246 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 246 (250)
.|..+-.+|...|++++|...|++.... .+.+...+..+...+.+.|+.++| ...+.+|.
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888888888877643 233456677777777777777777 44555554
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.95 E-value=0.00011 Score=50.72 Aligned_cols=81 Identities=9% Similarity=-0.090 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+.+ +.+...|..+-.+|.+.|++++|...|+.....+ +.+...|..+-.+|...|++++|.+.|+.
T Consensus 34 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 34 WDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556665555442 4467788888888999999999999999877653 33566778888999999999999999988
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 112 al~ 114 (142)
T 2xcb_A 112 ARA 114 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.94 E-value=9.3e-05 Score=51.83 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
+++|++.+++..... +-+...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++
T Consensus 13 ~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 13 VERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 445555555544321 2234556667778888888888888888766642 22567777788888888888888888877
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 91 al~ 93 (150)
T 4ga2_A 91 SVE 93 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.93 E-value=0.00063 Score=50.87 Aligned_cols=146 Identities=6% Similarity=-0.081 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHh------------------cCChhHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAA------------------ASDIHGMDKI 118 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~------------------~~~~~~a~~~ 118 (250)
...+..+..+|.+.|++++|...|++..+. .|+.. .+-.+-.++.+ .|++++|.+.
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 118 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD 118 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence 356777888999999999999999988764 24332 33334444443 5789999999
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CCh----hhHHHHHH
Q 037164 119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFN----KGYMTMMG 192 (250)
Q Consensus 119 ~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~li~ 192 (250)
|+++... .+-+...+.+. .....+............. .|...++...+...++.... |+. ..+..+..
T Consensus 119 ~~~~l~~--~P~~~~a~~a~-~~l~~~~~~~~~~~~~~a~---~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 192 (225)
T 2yhc_A 119 FSKLVRG--YPNSQYTTDAT-KRLVFLKDRLAKYEYSVAE---YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN 192 (225)
T ss_dssp HHHHHTT--CTTCTTHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHH--CcCChhHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH
Confidence 9998754 21112222111 0001111111100000000 33355666666666655422 332 45778889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 037164 193 LLLKLDDVKGAEKTLRNWTSKN 214 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~~ 214 (250)
++.+.|+.++|.+.++.+...+
T Consensus 193 ~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 193 AYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHcCCcHHHHHHHHHHHhhC
Confidence 9999999999999999887543
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.93 E-value=6.9e-05 Score=52.52 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=84.9
Q ss_pred HhhhccChhHHHHHHHHhhhhhcc-ccc-cc----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQ-CLF-FG----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI 80 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~-y~----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a 80 (250)
++...|++++|...|.......|. +.. |. .++|++.|++..+.+ +-+..+|..+-.+|.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 445678899999988876555332 222 22 899999999998863 45788999999999999999999
Q ss_pred HHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHH-HHHHhh
Q 037164 81 DALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKI-INMTES 124 (250)
Q Consensus 81 ~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~-~~~m~~ 124 (250)
...|+...+. .| +...|..+-..|.+.|++++|.+. +++..+
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999987764 45 567889999999999999877665 576543
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.91 E-value=0.00014 Score=51.11 Aligned_cols=81 Identities=9% Similarity=-0.131 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+. .+.+..++..+..+|...|++++|.+.++...+.. +.+...|..+..++...|++++|.+.+++
T Consensus 29 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 29 YENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45555555555443 23456778888888888888888888888776652 23566777788888888888888888888
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 107 a~~ 109 (166)
T 1a17_A 107 VVK 109 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.90 E-value=0.00013 Score=51.07 Aligned_cols=81 Identities=5% Similarity=-0.114 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++....+ +.+...|..+-.+|.+.|++++|...|+...+.+ +.+...|..+-.+|...|++++|.+.|+.
T Consensus 37 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 37 YEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666666665542 4567788888888999999999999999877652 23567788888999999999999999988
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 115 al~ 117 (148)
T 2vgx_A 115 AQE 117 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.90 E-value=0.00011 Score=52.71 Aligned_cols=109 Identities=8% Similarity=-0.111 Sum_probs=61.0
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHH-HhhcCChh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMIL-NYLTGNRE 78 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~~~ 78 (250)
..+.+.|++++|...|+......|+. ..+. .++|...|++..+.. |+...+..+... +...++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 34566777777777777765553332 2222 677777777765532 333332222111 12222333
Q ss_pred hHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 79 KIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
++...++...+. .| +...+..+-..+...|++++|...|++...
T Consensus 92 ~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 92 PELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456666655543 34 356666677777777777777777777654
No 126
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.86 E-value=0.00086 Score=52.78 Aligned_cols=143 Identities=9% Similarity=0.026 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCC
Q 037164 80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRN 158 (250)
Q Consensus 80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~ 158 (250)
+...|++..+.+ .++..++..+..++...|++++|++++.+.... +-.++ ...+..+ -.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~--------vq---------- 144 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLA--------IE---------- 144 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHH--------HH----------
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHH--------HH----------
Confidence 677777766555 566666667789999999999999999987543 32112 1221111 00
Q ss_pred chhhhcchhHHHHHHHHHhccCC--C-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 037164 159 SSNAFELKDQLYRIWKHYGQTRK--V-----FNKGYMTMMGL--LLKLD--DVKGAEKTLRNWTSKNLPYDFGLPSSLID 227 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 227 (250)
.+.+.++.+.+.+.++.+.. | +..+...+..+ ....| +..+|..+|+++... .|+..+-..|+.
T Consensus 145 ---i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln 219 (310)
T 3mv2_B 145 ---VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLN 219 (310)
T ss_dssp ---HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHH
T ss_pred ---HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHH
Confidence 11122333333333333211 2 23445555555 33334 899999999998643 344233445566
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 037164 228 AHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 228 ~~~~~g~~~~a~~~~~~m~~ 247 (250)
++.+.|++++|++.++.+.+
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999987654
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.86 E-value=0.0005 Score=54.10 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=116.8
Q ss_pred ccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDM----GFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEK- 90 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~----~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~- 90 (250)
.++++.|..+|...-.......- .++|...|.+..+. +-.+ -..+|+.+..+|.+.|++++|...+++..+.
T Consensus 29 ~~~~~~A~~~~~~a~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAVAFKNAKQ--LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 47888999988876432111111 55666666555432 1111 2468899999999999999999999975442
Q ss_pred ---CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhh
Q 037164 91 ---SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLI 153 (250)
Q Consensus 91 ---gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~ 153 (250)
|-.+ -..+|+.+-..|.. |++++|.+.|++.... .+-.+. ..++..+ +++|...|++.....
T Consensus 107 ~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 107 VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2111 13577888888988 9999999999986532 011110 1222222 455555554444222
Q ss_pred hccCCchhhhcchhHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc------chHHHH
Q 037164 154 ATKRNSSNAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG------LPSSLI 226 (250)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li 226 (250)
..... .+. ...+..+...+...|+.++|...|++.. . .|+.. ....++
T Consensus 186 ~~~~~----------------------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 186 KEMEN----------------------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHTTC----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHH
T ss_pred HHcCC----------------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHH
Confidence 11100 011 2356677778888899999999999987 3 33221 234455
Q ss_pred HHHHhcCChhHHHH
Q 037164 227 DAHCKNGLLEKAQS 240 (250)
Q Consensus 227 ~~~~~~g~~~~a~~ 240 (250)
.++ ..|+.+.+..
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 555 5677766655
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00082 Score=43.80 Aligned_cols=82 Identities=6% Similarity=-0.094 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+. .+.+...+..+..+|.+.|++++|...+++..+.. +.+...|..+..++...|++++|.+.+++
T Consensus 20 ~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 20 IDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444433 23467788888888999999999999999877652 23567788888999999999999999998
Q ss_pred HhhC
Q 037164 122 TESN 125 (250)
Q Consensus 122 m~~~ 125 (250)
....
T Consensus 98 ~~~~ 101 (118)
T 1elw_A 98 GLKH 101 (118)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 8653
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.00052 Score=44.38 Aligned_cols=81 Identities=5% Similarity=-0.087 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhc-CChhHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAA-SDIHGMDKII 119 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~-~~~~~a~~~~ 119 (250)
++|...|++..+. .+.+..+|..+..+|.+.|++++|.+.+++..+.. +. +...|..+..++.+. |++++|.+.+
T Consensus 23 ~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 23 TESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444333 23456788889999999999999999999887652 22 477888899999999 9999999999
Q ss_pred HHHhhC
Q 037164 120 NMTESN 125 (250)
Q Consensus 120 ~~m~~~ 125 (250)
+.....
T Consensus 101 ~~~~~~ 106 (112)
T 2kck_A 101 ARAKLE 106 (112)
T ss_dssp HHHGGG
T ss_pred HHHhhc
Confidence 998654
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.80 E-value=0.00055 Score=48.88 Aligned_cols=116 Identities=6% Similarity=-0.099 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHH-HHhcCCh--hHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSA-YAAASDI--HGMDKI 118 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~-~~~~~~~--~~a~~~ 118 (250)
.++|...|++..+.. +.+...|..+..+|...|++++|...|+...+.. +.+...|..+..+ +...|++ ++|.+.
T Consensus 26 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 26 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp -CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 566777777776653 4466778888888888888888888888766542 2245566666666 6677777 778777
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 037164 119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLD 198 (250)
Q Consensus 119 ~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 198 (250)
+++.... .| .+...+..+...|...|
T Consensus 104 ~~~al~~---~p---------------------------------------------------~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 104 IDKALAL---DS---------------------------------------------------NEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHHHHH---CT---------------------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh---CC---------------------------------------------------CcHHHHHHHHHHHHHcc
Confidence 7766542 01 12344666777888899
Q ss_pred CHHHHHHHHHHHHhC
Q 037164 199 DVKGAEKTLRNWTSK 213 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~ 213 (250)
++++|...|++....
T Consensus 130 ~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 130 NYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999988754
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00046 Score=46.29 Aligned_cols=81 Identities=10% Similarity=-0.167 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+. -+.+...|..+-.+|.+.|++++|...++...+.+ +.+...|..+-.++...|++++|.+.|++
T Consensus 20 ~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 20 WPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34444444444443 23456788888888888888888888888876642 22456777788888888888888888887
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 98 al~ 100 (126)
T 3upv_A 98 ART 100 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 132
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.78 E-value=0.00038 Score=51.46 Aligned_cols=158 Identities=9% Similarity=-0.088 Sum_probs=92.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhh----------------hHHHHHhcCChhHHHHHHHHHhhCC
Q 037164 64 CYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGI----------------RPSAYAAASDIHGMDKIINMTESNP 126 (250)
Q Consensus 64 y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~----------------li~~~~~~~~~~~a~~~~~~m~~~~ 126 (250)
+-.....+.+.|++++|...|+...+. .|+ ...|.. +-.+|.+.|++++|...|++....
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334445677889999999999987664 343 345555 889999999999999999998653
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCC--HH
Q 037164 127 QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDD--VK 201 (250)
Q Consensus 127 g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~--~~ 201 (250)
-+-+...+..+ +. +|...++.+++.+.++.. .+.+...|..+-..|...|+ .+
T Consensus 84 -~p~~~~~~~~l---g~------------------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 84 -APNNVDCLEAC---AE------------------MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp -CTTCHHHHHHH---HH------------------HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHH---HH------------------HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 12223333222 00 111223333333333322 22334567777667665543 34
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
.+...++... ...|....+..+-.++...|++++|...|++.++.
T Consensus 142 ~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555543 12222223444555677789999999999988753
No 133
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.0012 Score=54.08 Aligned_cols=155 Identities=9% Similarity=0.022 Sum_probs=98.8
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCC-Cc---------------hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH
Q 037164 70 LNYLTGNREKIDALMLEMEEKSING-DQ---------------FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN 133 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p-~~---------------~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~ 133 (250)
.+.+.|++++|.+.+....+..-.. +. ..+..+...|.+.|++++|.+.+.++....+-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 4567889999999998877642221 11 1366788999999999999999988754211222221
Q ss_pred HH----HHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC-CC-hhhHHHHHHHHHhcC
Q 037164 134 LL----AVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK-VF-NKGYMTMMGLLLKLD 198 (250)
Q Consensus 134 ~~----~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g 198 (250)
+- +.+ .+++..++.+.. ........ +. ..++..+...|...|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSI-----------------------EFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHH-----------------------HHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------------------HHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 11 111 233333332222 11111111 22 356778889999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-----CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 199 DVKGAEKTLRNWTSKNLPY-----DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 199 ~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
++++|..++++....-... .+.++..++..|...|++++|..++++...
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999876432222 245788889999999999999999887653
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.76 E-value=0.00062 Score=44.02 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
...+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|.+.+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455555566666666666666666655432 22445555566666666666666666665543
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.74 E-value=0.00049 Score=46.16 Aligned_cols=81 Identities=7% Similarity=-0.215 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+. .+.+..++..+..+|...|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.+.+++
T Consensus 32 ~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 32 YPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp SHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444555554443 23467888899999999999999999999877752 23567888888999999999999999998
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 110 ~~~ 112 (133)
T 2lni_A 110 ALD 112 (133)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.74 E-value=0.0029 Score=49.09 Aligned_cols=88 Identities=8% Similarity=-0.157 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
+...+..+-..+.+.|++++|...|++..+. .| +...|..+-.+|.+.|++++|.+.+++.... -+.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4456666666777777777777777765553 23 5566666667777777777777777766542 11223333333
Q ss_pred ---------HHHHHHHHHHHHh
Q 037164 139 ---------LYMAMTMLKKSEG 151 (250)
Q Consensus 139 ---------~~~a~~~~~~~~~ 151 (250)
+++|...|.+...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666653
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.73 E-value=0.00039 Score=46.32 Aligned_cols=82 Identities=7% Similarity=-0.146 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+. .+.+...+..+..+|...|++++|.+.++...+.. +.+...|..+...|.+.|++++|.+.+++
T Consensus 28 ~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 28 FEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555555555443 23456788888888888999999999988877652 23467778888888899999999999888
Q ss_pred HhhC
Q 037164 122 TESN 125 (250)
Q Consensus 122 m~~~ 125 (250)
....
T Consensus 106 ~~~~ 109 (131)
T 2vyi_A 106 ALEL 109 (131)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7543
No 138
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.72 E-value=0.00029 Score=48.86 Aligned_cols=139 Identities=14% Similarity=-0.031 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC-CC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSIN-GD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL 135 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~-p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 135 (250)
..++..+-..|...|++++|.+.+++..+..-. ++ ..++..+-..+...|++++|.+.+++....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------- 78 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL---------- 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence 457888888999999999999999886553111 11 147778889999999999999998876542
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 037164 136 AVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-- 213 (250)
Q Consensus 136 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 213 (250)
.... ... . .....+..+-..+...|++++|...+++....
T Consensus 79 ----------~~~~------~~~-~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 79 ----------ARQL------KDR-A---------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp ----------HHHT------TCH-H---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHh------CCc-H---------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0000 000 0 01234556677778888888888888876532
Q ss_pred --CCC-CCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 214 --NLP-YDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 214 --~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+.+ ....++..+...|...|++++|...+++..+
T Consensus 121 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111 1234567777888888888888888887654
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.72 E-value=0.00036 Score=49.03 Aligned_cols=96 Identities=6% Similarity=-0.102 Sum_probs=58.4
Q ss_pred hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHH
Q 037164 97 FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY 176 (250)
Q Consensus 97 ~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (250)
..+..+-..+.+.|++++|.+.|++.... .|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P---------------------------------------------- 67 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DF---------------------------------------------- 67 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----------------------------------------------
Confidence 45666667777888888888888776542 11
Q ss_pred hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 177 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+...|..+-.+|.+.|++++|...|++..... +.++..|..+-.+|.+.|++++|...|++.++
T Consensus 68 -----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 68 -----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122345555566666666666666666655322 23455566666666666666666666666554
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.70 E-value=0.0006 Score=48.15 Aligned_cols=81 Identities=12% Similarity=-0.042 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
.++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|.+.|++
T Consensus 27 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 27 YSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344444444444432 3467788888888999999999999999877653 23567788888999999999999999988
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 105 al~ 107 (164)
T 3sz7_A 105 GIE 107 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.70 E-value=0.0041 Score=48.38 Aligned_cols=63 Identities=10% Similarity=-0.026 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-----NLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..|+.+-..|...|++++|...|++.... +..+ ...++..+...|.+.|++++|...+++.++
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36888999999999999999999998731 1222 234788999999999999999999998764
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.70 E-value=0.0016 Score=42.38 Aligned_cols=98 Identities=16% Similarity=0.014 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHH
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLL 139 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~ 139 (250)
++..+..+...+...|++++|.+.++...... +.+...|..+..++...|++++|...+++.... .|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KP--------- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT---------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---Cc---------
Confidence 45678888888999999999999999877652 336677888888999999999999888877542 01
Q ss_pred HHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 140 YMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.+...+..+..++...|++++|...+++...
T Consensus 70 ------------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 70 ------------------------------------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------------------------------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1223466677788889999999999988774
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.69 E-value=0.00049 Score=50.26 Aligned_cols=133 Identities=10% Similarity=-0.140 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCC--------------chhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGD--------------QFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~--------------~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
...+..+-..+.+.|++++|.+.|++..+..- .|+ ...|..+-.+|.+.|++++|...+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 35566777788889999999999988766311 111 167777778888888888888888776542
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164 126 PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205 (250)
Q Consensus 126 ~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 205 (250)
.| .+...|..+-.+|...|++++|..
T Consensus 118 ---~p---------------------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 118 ---DK---------------------------------------------------NNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp ---ST---------------------------------------------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---Cc---------------------------------------------------ccHHHHHHHHHHHHHcccHHHHHH
Confidence 01 123345566677788888888888
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 037164 206 TLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQ-SLINHAETK 248 (250)
Q Consensus 206 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 248 (250)
.|++.... .+-+..++..+...+...++.+++. ..+..|...
T Consensus 144 ~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 144 NLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88887643 2334566777777777777766666 555555443
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.67 E-value=0.00081 Score=45.55 Aligned_cols=63 Identities=6% Similarity=-0.172 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
+...|..+..+|...|++++|...++...+.+ +.+...|..+-.+|...|++++|.+.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 42 VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666666666666666666666655532 2244556666666666666666666666654
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.67 E-value=0.00037 Score=55.74 Aligned_cols=63 Identities=10% Similarity=-0.103 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
..+|..+-.+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|...|++...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4788889999999999999999999877752 33667888888999999999999999998765
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.66 E-value=0.00047 Score=46.70 Aligned_cols=82 Identities=9% Similarity=0.025 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--CCCC----chhHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS--INGD----QFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--i~p~----~~ty~~li~~~~~~~~~~~a 115 (250)
.++|+..|++..+. -+.+..+|+.+-.+|.+.|++++|++.++...+.+ ..++ ..+|..+-.++...|++++|
T Consensus 24 ~~~A~~~y~~Al~~-~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A 102 (127)
T 4gcn_A 24 FEKAHVHYDKAIEL-DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLA 102 (127)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34444444444433 23456777888888888888888888888765421 1111 13566666777788888888
Q ss_pred HHHHHHHhh
Q 037164 116 DKIINMTES 124 (250)
Q Consensus 116 ~~~~~~m~~ 124 (250)
.+.|++...
T Consensus 103 ~~~~~kal~ 111 (127)
T 4gcn_A 103 VQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887654
No 147
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.66 E-value=0.00012 Score=48.78 Aligned_cols=82 Identities=7% Similarity=-0.120 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHCC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164 43 GKAEMVVQEMKDMG--FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 43 ~~A~~~~~~m~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
++|+..|++..+.+ -+.+..+|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666666666543 23456788899999999999999999999987762 2356788888999999999999999999
Q ss_pred HHhhC
Q 037164 121 MTESN 125 (250)
Q Consensus 121 ~m~~~ 125 (250)
+....
T Consensus 86 ~al~~ 90 (117)
T 3k9i_A 86 KIIAE 90 (117)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.003 Score=51.76 Aligned_cols=203 Identities=9% Similarity=-0.039 Sum_probs=123.0
Q ss_pred HhhhccChhHHHHHHHHhhhhhcccc-ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCL-FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEM 87 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 87 (250)
.+.+.|++++|.+.|..+.+..++.. .+. ........ ...+..|...|...|++++|.+++...
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQ-----------ETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45678999999999988877633322 222 11211111 124577888999999999999999886
Q ss_pred Hhc-CCCCCch----hHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCccH-HHHHHH---------HHHHHHHHHHH
Q 037164 88 EEK-SINGDQF----TLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLDF-NLLAVL---------LYMAMTMLKKS 149 (250)
Q Consensus 88 ~~~-gi~p~~~----ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~~-~~~~~l---------~~~a~~~~~~~ 149 (250)
... +-.++.. +.+.+-..+...|+++.|.+++++.... .+..+.. .++..+ +++|..++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 82 TEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 542 1122222 2233334445568889998888775321 1333322 222222 55555555555
Q ss_pred HhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--CcchH
Q 037164 150 EGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK--NLP-Y-D--FGLPS 223 (250)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-~-~--~~~~~ 223 (250)
.......... +....+|..++..|...|++++|..++++.... ... | . ..++.
T Consensus 162 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 162 LREFKKLDDK---------------------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHTTSSCS---------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcccc---------------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 4222111110 012367888899999999999999999886532 121 1 1 24566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 037164 224 SLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 224 ~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+...+...|+++.|...|.+..+
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777778888999999998877654
No 149
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.61 E-value=0.0012 Score=44.64 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY 140 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~ 140 (250)
...+..+-..|.+.|++++|.+.|++..+.+ +.+...|..+-.+|.+.|++++|.+.+++.... .|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p---------- 78 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DS---------- 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hh----------
Confidence 4567788888999999999999999877652 336778888889999999999999988877542 11
Q ss_pred HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.+...|..+-.+|...|++++|...|++...
T Consensus 79 -----------------------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 79 -----------------------------------------KFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1234466777888888999999999988775
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.61 E-value=0.0005 Score=45.82 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC--CCC----chhHhhhHHHHHhcCChhHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI--NGD----QFTLGIRPSAYAAASDIHGM 115 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi--~p~----~~ty~~li~~~~~~~~~~~a 115 (250)
.++|...|++..+. .+.+...+..+..+|...|++++|..+++...+..- .++ ..+|..+..+|.+.|++++|
T Consensus 20 ~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 98 (131)
T 1elr_A 20 FDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA 98 (131)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444444433 234667888888889999999999999998766421 222 66788888899999999999
Q ss_pred HHHHHHHhhC
Q 037164 116 DKIINMTESN 125 (250)
Q Consensus 116 ~~~~~~m~~~ 125 (250)
.+.|++....
T Consensus 99 ~~~~~~~~~~ 108 (131)
T 1elr_A 99 IHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 151
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00056 Score=45.10 Aligned_cols=80 Identities=5% Similarity=-0.075 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
+.|...|++..+.. +.+...+..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788888887763 4568899999999999999999999999987753 235678888999999999999999999987
Q ss_pred hh
Q 037164 123 ES 124 (250)
Q Consensus 123 ~~ 124 (250)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.59 E-value=0.00081 Score=44.77 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY 140 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~ 140 (250)
...|..+...+...|++++|..+++...+.. +.+...|..+..+|...|++++|...+++.... .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~------------- 68 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-G------------- 68 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-H-------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-c-------------
Confidence 4678888899999999999999999987753 346778888899999999999999999887543 0
Q ss_pred HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164 141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220 (250)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 220 (250)
|..... . ......|..+...+.+.|++++|...|++.... .|+..
T Consensus 69 --------------~~~~~~-----~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 113 (131)
T 1elr_A 69 --------------RENRED-----Y--------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPD 113 (131)
T ss_dssp --------------HHSTTC-----H--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred --------------cccchh-----H--------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHH
Confidence 000000 0 000345667788899999999999999998864 34544
Q ss_pred chHHHHHH
Q 037164 221 LPSSLIDA 228 (250)
Q Consensus 221 ~~~~li~~ 228 (250)
.+..+-..
T Consensus 114 ~~~~l~~~ 121 (131)
T 1elr_A 114 VLKKCQQA 121 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.59 E-value=0.00049 Score=50.02 Aligned_cols=110 Identities=14% Similarity=0.026 Sum_probs=73.8
Q ss_pred hhccChhHHHHHHHHhhhhh-ccccccc-----------hhHHHHHHHHHHH----CCC-CccHHHHHHHHHHHhhcCCh
Q 037164 15 FEVHGVEQAEIYFDNISKLL-RQCLFFG-----------VGKAEMVVQEMKD----MGF-ARRTIYCYIMMILNYLTGNR 77 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~~-~~~~~y~-----------~~~A~~~~~~m~~----~~~-~p~~~~y~~li~~~~~~g~~ 77 (250)
...|++++|.+.++.+.... .....+. .++|...|++..+ .+. +....+++.+-..|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45789999999444443321 1122222 7888888888755 222 23456788888999999999
Q ss_pred hhHHHHHHHHHhc----CCCC--CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 78 EKIDALMLEMEEK----SING--DQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 78 ~~a~~~~~~m~~~----gi~p--~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
++|.+.+++..+. +-.| ....+..+-..+...|++++|.+.+++...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999986543 2111 234577888999999999999999987753
No 154
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.56 E-value=0.0057 Score=45.18 Aligned_cols=148 Identities=9% Similarity=-0.055 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC----ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChh
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG----NREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIH 113 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~ 113 (250)
.++|...|++..+.| ++..+..|-..|.. + ++++|.++|+...+.| +...+..|-..|.. .++++
T Consensus 34 ~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~ 106 (212)
T 3rjv_A 34 YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVA 106 (212)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHH
Confidence 789999999998875 56788888888888 7 8999999999987764 56777788888877 88999
Q ss_pred HHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHHHHHH-hhhhccCCchhhhcchhHHHHHHHHHhccCC--CChhhHHH
Q 037164 114 GMDKIINMTESNPQMVL-DFNLLAVLLYMAMTMLKKSE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFNKGYMT 189 (250)
Q Consensus 114 ~a~~~~~~m~~~~g~~~-~~~~~~~l~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 189 (250)
+|.++|++.... |... ....+..+ -.+- .+.. ...+..++...++.... .+...+..
T Consensus 107 ~A~~~~~~A~~~-~~~~~~~~a~~~L--------g~~y~~g~g----------~~~d~~~A~~~~~~A~~~~~~~~a~~~ 167 (212)
T 3rjv_A 107 HAITLLQDAARD-SESDAAVDAQMLL--------GLIYASGVH----------GPEDDVKASEYFKGSSSLSRTGYAEYW 167 (212)
T ss_dssp HHHHHHHHHTSS-TTSHHHHHHHHHH--------HHHHHHTSS----------SSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHHHHc-CCCcchHHHHHHH--------HHHHHcCCC----------CCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999998776 5420 12222111 1111 1110 02233444444433321 23445666
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 037164 190 MMGLLLKL-D-----DVKGAEKTLRNWTSKNL 215 (250)
Q Consensus 190 li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 215 (250)
|-..|.+. | +.++|..+|++....|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66666553 3 89999999998876554
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.55 E-value=0.00078 Score=45.16 Aligned_cols=79 Identities=4% Similarity=-0.135 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
++|...|++..+. -+.+...|..+-.++.+.|++++|...|++..+. .| +...|..+-.++.+.|++++|...+++
T Consensus 34 ~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 34 AEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444433 2346778888888888999999999999877664 34 456777888888999999999999888
Q ss_pred Hhh
Q 037164 122 TES 124 (250)
Q Consensus 122 m~~ 124 (250)
...
T Consensus 111 al~ 113 (121)
T 1hxi_A 111 WLL 113 (121)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.54 E-value=0.00096 Score=46.46 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
...|..+-.+|...|++++|...|++...
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566666777777777777777777653
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.53 E-value=0.0016 Score=43.51 Aligned_cols=62 Identities=10% Similarity=-0.043 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
..+..+..+|.+.|++++|...++...+.. |+ ...+..+-.++.+.|++++|.+.|++....
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467778888999999999999999877652 33 456777888999999999999999988653
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.53 E-value=0.0018 Score=50.33 Aligned_cols=180 Identities=9% Similarity=-0.045 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHH-------HHHHhhcCChhhHHHHHHHHHhcCCCCCchh----------------
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIM-------MILNYLTGNREKIDALMLEMEEKSINGDQFT---------------- 98 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~l-------i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~t---------------- 98 (250)
...|.+.|.+..+.. +-....|+.+ ...+.+.+...++...+. ...++.|+...
T Consensus 22 ~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~--~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 22 EARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS--GSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH--HTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred HHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH--HHhcCChhhhhhhhccCCccccccccc
Confidence 677888888887753 3456777777 455666666666555554 45556554422
Q ss_pred ------HhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHH
Q 037164 99 ------LGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRI 172 (250)
Q Consensus 99 ------y~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
+-.+...+...|++++|.++|+.+... + |+......+ +. .+...++..++
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-~--p~~~~~~~~---a~------------------l~~~~~r~~dA 154 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVA-G--SEHLVAWMK---AV------------------VYGAAERWTDV 154 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-T--CHHHHHHHH---HH------------------HHHHTTCHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CchHHHHHH---HH------------------HHHHcCCHHHH
Confidence 122557889999999999999888653 2 433211111 00 11133334444
Q ss_pred HHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 173 WKHYGQTRK-VF----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 173 ~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
...++.... ++ ...+..+-.++...|++++|+..|++.......|. ...+..+-.++.+.|+.++|..+|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444443332 21 23566777899999999999999999874322153 335667777888999999999999998
Q ss_pred Hhc
Q 037164 246 ETK 248 (250)
Q Consensus 246 ~~~ 248 (250)
...
T Consensus 235 ~a~ 237 (282)
T 4f3v_A 235 QTT 237 (282)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 159
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.52 E-value=0.0033 Score=55.10 Aligned_cols=170 Identities=7% Similarity=0.061 Sum_probs=123.3
Q ss_pred hhHHH-HHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC---------CCC------------chhH
Q 037164 42 VGKAE-MVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI---------NGD------------QFTL 99 (250)
Q Consensus 42 ~~~A~-~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi---------~p~------------~~ty 99 (250)
.++|. ++|++.... ++.+...|-..+...-+.|++++|.++|+....... .|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 67786 999998764 566777788888889999999999999998876410 142 2468
Q ss_pred hhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHHHHHHH--------HHHHHHHHHHHHhhhhccCCch-hhhc----c
Q 037164 100 GIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFNLLAVL--------LYMAMTMLKKSEGLIATKRNSS-NAFE----L 165 (250)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l--------~~~a~~~~~~~~~~~~~~~~~~-~~~~----~ 165 (250)
...+....+.|+.+.|.++|....+. +...+...+..+. .+.|.++|+...+.. |..... ..|. .
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHh
Confidence 88888888999999999999998765 3444555544333 578888888888653 344311 0222 5
Q ss_pred hhHHHHHHHHHhccCC--C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 166 KDQLYRIWKHYGQTRK--V----FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 166 ~~~~~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
.++.+++-.+++.... + ....|...+.--.+.|+.+.+.++.+++...
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666777777766433 3 2377888888889999999999999999864
No 160
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.50 E-value=0.022 Score=44.82 Aligned_cols=202 Identities=7% Similarity=-0.074 Sum_probs=129.6
Q ss_pred hccCh-hHHHHHHHHhhhhhccc-cccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHH----hhc--
Q 037164 16 EVHGV-EQAEIYFDNISKLLRQC-LFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILN----YLT-- 74 (250)
Q Consensus 16 k~~~~-~~a~~~f~~~~~~~~~~-~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~----~~~-- 74 (250)
+.|.. ++|.++++.+....|+- ..|+ +++++++++.+...+ +-+..+|+.--..+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34444 67999999887763332 2333 578899999988764 44566776665555 555
Q ss_pred -CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh--HHHHHHHHHhhCCCCCccHHHHHHH-------------
Q 037164 75 -GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH--GMDKIINMTESNPQMVLDFNLLAVL------------- 138 (250)
Q Consensus 75 -g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~--~a~~~~~~m~~~~g~~~~~~~~~~l------------- 138 (250)
+++++++++++.+.+.. +-|...|+.---...+.|+++ ++.+.++++... -+-+...|+.-
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchh
Confidence 78999999999988763 337788888877888888888 999999988764 22344444433
Q ss_pred --HHHHHHHHHHHHhhhhccCCchhhhc-----------chhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHH
Q 037164 139 --LYMAMTMLKKSEGLIATKRNSSNAFE-----------LKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKG 202 (250)
Q Consensus 139 --~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 202 (250)
++++++.+.++.... |.+. + .|+ ....+....+.+-... +.+...+..+...|.+.|+.++
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~-S-aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNP-S-TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCH-H-HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCc-c-HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 344555555554333 3333 2 444 1222333333222222 3566778888899999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHH
Q 037164 203 AEKTLRNWTSKNLPYDFGLPSS 224 (250)
Q Consensus 203 A~~~~~~m~~~~~~~~~~~~~~ 224 (250)
|.++++.+..+--+.....|+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHH
Confidence 9999999875433333344443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.48 E-value=0.0021 Score=45.25 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.+...|..+-..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++...
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788889999999999999999999877752 23678888899999999999999999998765
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.45 E-value=0.0019 Score=43.62 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFNLLAVLL 139 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l~ 139 (250)
..++..|-..|.+.|++++|.+.|++..+.. +-+...|+.+-.+|.+.|++++|.+.+++.... +...++...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----- 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL----- 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH-----
Confidence 4677888899999999999999999877642 235678889999999999999999999887542 001000000
Q ss_pred HHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 140 YMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
-..+|..+-.++...|++++|.+.|++...
T Consensus 82 -------------------------------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 -------------------------------------------IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 013466677788889999999999988765
No 163
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.45 E-value=0.00091 Score=52.13 Aligned_cols=110 Identities=9% Similarity=-0.090 Sum_probs=76.3
Q ss_pred hHhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHH-HHHhhcCChh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMM-ILNYLTGNRE 78 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li-~~~~~~g~~~ 78 (250)
..+.+.|++++|...|+......|+. ..+. .++|...+++.... .|+........ ..+.+.++.+
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 45667899999999999887774443 2222 78888888887664 34443333222 2366777778
Q ss_pred hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.|.+.+++.... -+.+...+..+-..+...|++++|...|+++..
T Consensus 203 ~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 203 PEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888888776654 233567778888888888888888888888754
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.44 E-value=0.0021 Score=53.73 Aligned_cols=140 Identities=7% Similarity=-0.098 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----------------chhHhhhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----------------QFTLGIRPSA 105 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----------------~~ty~~li~~ 105 (250)
.++|.+.|+...+.. +-....|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 445555554332221 123567888889999999999999999987763 233 4788889999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChh
Q 037164 106 YAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK 185 (250)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (250)
|.+.|++++|...+++.... .|+ +..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~---~p~---------------------------------------------------~~~ 352 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL---DSA---------------------------------------------------NEK 352 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STT---------------------------------------------------CHH
T ss_pred HHHhcCHHHHHHHHHHHHhc---CCc---------------------------------------------------cHH
Confidence 99999999999999887643 111 122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 239 (250)
.|..+-.+|...|++++|...|++.... .+-+...+..+-..+.+.|+.+++.
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665532 2234455555666666666555554
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.37 E-value=0.011 Score=47.34 Aligned_cols=198 Identities=12% Similarity=-0.046 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc-C-ChhHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA-S-DIHGMDKII 119 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~-~-~~~~a~~~~ 119 (250)
++|+++++++...+ +-+..+||.--.++...| ++++++++++.+...+ +-+..+|+.--..+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45666666666543 334455666656666666 4777777777766542 22555666655555554 5 667777777
Q ss_pred HHHhhCCCCCccHHHHHHH---------H--------HHHHHHHHHHHhhhhccCCchhhhc-------ch-------hH
Q 037164 120 NMTESNPQMVLDFNLLAVL---------L--------YMAMTMLKKSEGLIATKRNSSNAFE-------LK-------DQ 168 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~~~~l---------~--------~~a~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~ 168 (250)
+.+... -+-+...|+.- . .++++.+.++.... |... + +|+ +. ..
T Consensus 149 ~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~-S-AW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 149 HGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNN-S-AWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhccccccchHH
Confidence 766543 22334444333 1 24555555554332 2222 1 333 11 12
Q ss_pred HHHHHHHHhccC---CCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----CCCCCc
Q 037164 169 LYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDV--------------------KGAEKTLRNWTSKN-----LPYDFG 220 (250)
Q Consensus 169 ~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~~~~~ 220 (250)
+++.++..+... +-+...|+.+-..+.+.|+. .....+...+...+ ..++..
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 455566554432 24447777666666665543 22333333332221 135667
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 221 LPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 221 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
....|.+.|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 788999999999999999999998864
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.37 E-value=0.016 Score=45.00 Aligned_cols=63 Identities=10% Similarity=-0.031 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYD-----FGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+|+.+-..|...|++++|...|++.... ...|+ +.+++.+...|.+.|++++|..++++.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47888899999999999999999997621 11222 25888999999999999999999998764
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0039 Score=42.46 Aligned_cols=98 Identities=11% Similarity=-0.110 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL 134 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 134 (250)
.+...+..+...+.+.|++++|.++|++..+. .|+ ...|..+..+|...|++++|.+.+++.... .|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---- 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DG---- 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TS----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---Cc----
Confidence 45677888888888999999999999977653 465 577788888888899998888888876542 01
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 135 LAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 135 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.+...|..+-.++...|++++|...|++...
T Consensus 97 -----------------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 97 -----------------------------------------------GDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123455666777888888888888888764
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0027 Score=43.29 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
.++|...|++..+. .|+ ...|..+..+|...|++++|...++...+.. +.+...|..+..++...|++++|.+
T Consensus 44 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 44 YGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVL 120 (148)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666666666654 354 6788889999999999999999999877652 2356788888999999999999999
Q ss_pred HHHHHhh
Q 037164 118 IINMTES 124 (250)
Q Consensus 118 ~~~~m~~ 124 (250)
.|++...
T Consensus 121 ~~~~al~ 127 (148)
T 2dba_A 121 DLQRCVS 127 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.31 E-value=0.0053 Score=41.36 Aligned_cols=92 Identities=8% Similarity=-0.159 Sum_probs=71.7
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV 137 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 137 (250)
+.+...|..+-..+...|++++|...|....+.. +.+...|..+..++...|++++|...+++.... .+.+...+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHH
Confidence 3567889999999999999999999999877753 335788999999999999999999999998653 1223334433
Q ss_pred H---------HHHHHHHHHHHHhh
Q 037164 138 L---------LYMAMTMLKKSEGL 152 (250)
Q Consensus 138 l---------~~~a~~~~~~~~~~ 152 (250)
+ +++|...|.+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 77888888777643
No 170
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0043 Score=41.38 Aligned_cols=89 Identities=10% Similarity=-0.077 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL- 138 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l- 138 (250)
+...|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|.+.+++.... -+.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 35678888889999999999999999877752 336788999999999999999999999998653 12223333333
Q ss_pred --------HHHHHHHHHHHHh
Q 037164 139 --------LYMAMTMLKKSEG 151 (250)
Q Consensus 139 --------~~~a~~~~~~~~~ 151 (250)
.++|...|++...
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 7777777777663
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.28 E-value=0.00044 Score=50.50 Aligned_cols=81 Identities=9% Similarity=-0.123 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHCCCCcc----------------HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARR----------------TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSA 105 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~----------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~ 105 (250)
.++|...|++..+.. +.+ ..+|..+-.+|.+.|++++|...++...+. -+.+...|..+-.+
T Consensus 54 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 131 (198)
T 2fbn_A 54 INEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVA 131 (198)
T ss_dssp HHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 677777777776642 112 278889999999999999999999988775 23466788888999
Q ss_pred HHhcCChhHHHHHHHHHhh
Q 037164 106 YAAASDIHGMDKIINMTES 124 (250)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~ 124 (250)
|...|++++|.+.|++...
T Consensus 132 ~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 132 NMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH
Confidence 9999999999999998864
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.28 E-value=0.00061 Score=57.27 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=77.6
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK 79 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~ 79 (250)
..+.+.|++++|.+.|++..+..|+ ...|. .++|++.|++..+.. +.+..+|..+-.+|.+.|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3566789999999999988777444 33333 899999999998873 4567888999999999999999
Q ss_pred HHHHHHHHHhcCCCC-CchhHhhhHHH--HHhcCChhHHHHHHH
Q 037164 80 IDALMLEMEEKSING-DQFTLGIRPSA--YAAASDIHGMDKIIN 120 (250)
Q Consensus 80 a~~~~~~m~~~gi~p-~~~ty~~li~~--~~~~~~~~~a~~~~~ 120 (250)
|.+.+++..+. .| +...+..+-.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999987764 23 33455555555 888899999999888
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.26 E-value=0.0011 Score=55.69 Aligned_cols=52 Identities=13% Similarity=-0.044 Sum_probs=28.0
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 70 LNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
.+.+.|++++|.+.+++..+. .| +..+|..+-.+|.+.|++++|.+.+++..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344555566666665554443 22 34555555556666666666655555554
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.25 E-value=0.017 Score=40.37 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=72.6
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS 91 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 91 (250)
.+.+.|++++|.+.|.......+...... ..... +.++. +.+...|..+..+|.+.|++++|...++...+.+
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE--WVELD----RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH--HHHHH----HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH--HHHHH----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 56677888888887776654411100000 00000 00111 1245789999999999999999999999887753
Q ss_pred CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 92 INGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 92 i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+.+...|..+-.+|...|++++|.+.|++...
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 33567888899999999999999999998864
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.22 E-value=0.0017 Score=44.76 Aligned_cols=111 Identities=12% Similarity=-0.012 Sum_probs=55.1
Q ss_pred hHhhhccChhHHHHHHHHhhhhhcccc-------ccc-----------hhHHHHHHHHHHHC----CCCc-cHHHHHHHH
Q 037164 12 NLIFEVHGVEQAEIYFDNISKLLRQCL-------FFG-----------VGKAEMVVQEMKDM----GFAR-RTIYCYIMM 68 (250)
Q Consensus 12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-------~y~-----------~~~A~~~~~~m~~~----~~~p-~~~~y~~li 68 (250)
..+...|++++|.+.|.+.....+... .+. .++|...|++..+. +-.+ ...++..+.
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 356677888888888887665421111 111 45555555554331 1001 133455555
Q ss_pred HHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 69 ILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
.+|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++.
T Consensus 97 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555566666665555554321 1111 1233444555555556666665555544
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.18 E-value=0.001 Score=56.06 Aligned_cols=131 Identities=8% Similarity=-0.033 Sum_probs=86.0
Q ss_pred HHhhcCChhhHHHHHHHHHhc---CCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHH
Q 037164 70 LNYLTGNREKIDALMLEMEEK---SINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMA 142 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~---gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a 142 (250)
.+...|++++|..++++..+. -+-|+ ..+++.|...|...|++++|..++++....
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 356789999999999876442 22232 357899999999999999999998876542
Q ss_pred HHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-
Q 037164 143 MTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTS-----KNL- 215 (250)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~- 215 (250)
+.+ ...++- |++ .+++.|-..|...|++++|+.++++... .|.
T Consensus 381 ---~~~---~lG~~H------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 381 ---YMK---LYHHNN------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp ---HHH---HSCTTC------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ---HHH---HcCCCC------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 000011 233 6677777888888888888887777431 121
Q ss_pred CC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 216 PY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 216 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.| ...+.+.|-.++...|.+++|+.++.++.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233445566667777778888888877765
No 177
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.12 E-value=0.02 Score=38.97 Aligned_cols=137 Identities=13% Similarity=0.022 Sum_probs=91.9
Q ss_pred HhcCChhHHHHHHHHHhhCCC-CCccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh
Q 037164 107 AAASDIHGMDKIINMTESNPQ-MVLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN 184 (250)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~~~g-~~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (250)
.-.|.+++..+++.+...+.. -+-+|+.++.+ .-...-+++-++.-....+. ..++++.++.+.+-... .+.
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi-----s~C~NlKrVi~C~~~~n-~~s 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL-----DKCQNLKSVVECGVINN-TLN 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-----GGCSCTHHHHHHHHHTT-CCC
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCc-----HhhhcHHHHHHHHHHhc-chH
Confidence 345667777777776643312 23466666666 11122222332222211111 15667777777765554 345
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 250 (250)
......++.+...|+-|+-.+++..+. .+.+|++...-.+-.||.+-|+..+|.+++.++=++|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l-~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREIL-KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHh-ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 567888899999999999999999865 35677888888999999999999999999999988885
No 178
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.12 E-value=0.042 Score=46.30 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
.+..+|+++... ++-+...|-..+.-+.+.|++++|..++++.... +.+...|. .|+...+.+++ ++.+.
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHH
Confidence 356788888765 4556778888888888999999999999998877 33333332 33333222222 33322
Q ss_pred hCC---C-----C-Ccc-----HHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-------chh-HHHHHHHH
Q 037164 124 SNP---Q-----M-VLD-----FNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKD-QLYRIWKH 175 (250)
Q Consensus 124 ~~~---g-----~-~~~-----~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~ 175 (250)
... . . .+. +..|... .+.|..+|.+. . . |..... .|. ..+ +.+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~-~~~~~~-v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N-EGVGPH-VFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T-SCCCHH-HHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C-CCCChH-HHHHHHHHHHHHCCChHHHHHH
Confidence 110 0 1 111 1122222 67788888887 2 1 221111 232 122 24444444
Q ss_pred Hhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 176 YGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 176 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
++.. .+.+...|...+.-..+.|+.+.|..+|+... .....|...++-=...|+.+.+..+++++.+
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4332 33334556777888888999999999999873 2467788888877888999999999988764
No 179
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.09 E-value=0.0044 Score=42.49 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
..++..++...++.. .+.+...|..+-.+|.+.|++++|...|++..... +.+...+..+-.+|...|++++|...
T Consensus 30 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 108 (142)
T 2xcb_A 30 QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESG 108 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444444443 23445777888889999999999999999988543 44677888899999999999999999
Q ss_pred HHHHHh
Q 037164 242 INHAET 247 (250)
Q Consensus 242 ~~~m~~ 247 (250)
|++..+
T Consensus 109 ~~~al~ 114 (142)
T 2xcb_A 109 FYSARA 114 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.0039 Score=40.01 Aligned_cols=66 Identities=12% Similarity=-0.033 Sum_probs=56.2
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+-+...+..+-.+|.+.|++++|.+.|+...+.+ +.+...|..+-.+|.+.|++++|.+.+++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467789999999999999999999999987753 23567889999999999999999999998754
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0061 Score=41.77 Aligned_cols=108 Identities=10% Similarity=-0.098 Sum_probs=79.2
Q ss_pred hhccChhHHHHHHHHhhhh-hcccc---ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChhhHHH
Q 037164 15 FEVHGVEQAEIYFDNISKL-LRQCL---FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNREKIDA 82 (250)
Q Consensus 15 ~k~~~~~~a~~~f~~~~~~-~~~~~---~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~ 82 (250)
.-.+++++|.++|+...+. .+... .|. +++|.+.|++..+.| +...++.|-..|.. .+++++|.+
T Consensus 6 g~~~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CCccCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3446778888888877655 22221 111 677889998888875 56788888888877 788899999
Q ss_pred HHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCCC
Q 037164 83 LMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 83 ~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~ 129 (250)
+|+.--+.| +...+..|-..|.. .+|+++|.++|++.... |..
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~ 129 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL-GSE 129 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC-CCH
Confidence 998877764 46677777778877 78889999998888766 543
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0025 Score=40.90 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=55.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+...+..+-..|.+.|++++|...|++..... +.+...|..+-.+|...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44678888899999999999999999988543 34677899999999999999999999998764
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.00 E-value=0.0031 Score=42.02 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..+..+-.++.+.|++++|...|++..... +.+ ...+..+..+|...|++++|...|+++.+.
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467777788999999999999999987543 222 455778888999999999999999988753
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.99 E-value=0.058 Score=43.17 Aligned_cols=194 Identities=10% Similarity=-0.052 Sum_probs=120.1
Q ss_pred HhhhccChhHHHHHHHHhhhhhcc-ccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc-C-Ch
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQ-CLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT-G-NR 77 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~-g-~~ 77 (250)
...+...-++|.++++.+....|+ ...|+ +++++++++.+...+ +-+..+|+.--.++.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334455557899999988776333 23333 688999999998874 56778888887777776 6 88
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh--------HHHHHHHHHhhCCCCCccHHHHHHH-----------
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH--------GMDKIINMTESNPQMVLDFNLLAVL----------- 138 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~--------~a~~~~~~m~~~~g~~~~~~~~~~l----------- 138 (250)
++++++++.+.+..- -|...|+.---...+.+.++ ++.+.++++... -+-+...|+..
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 899999998876532 36677776655555555555 788888877653 22344444443
Q ss_pred -----HHHHHHHHHHHHhhhhccCCchhhhc-------c--hh------------------HHHHHHHHHhccC------
Q 037164 139 -----LYMAMTMLKKSEGLIATKRNSSNAFE-------L--KD------------------QLYRIWKHYGQTR------ 180 (250)
Q Consensus 139 -----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~--~~------------------~~~~~~~~~~~~~------ 180 (250)
++++++.+.++.... |.+. + .|. + .+ ....+.+......
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~-S-aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNV-S-AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 245555555544322 2332 1 333 1 00 1223333332221
Q ss_pred ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 181 ---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 181 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
.++......+.+.|...|+.++|.++++.+..+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 245566778889999999999999999998744
No 185
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.98 E-value=0.0017 Score=50.41 Aligned_cols=114 Identities=4% Similarity=-0.155 Sum_probs=78.5
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhhccc-cccc----------hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCC
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLLRQC-LFFG----------VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGN 76 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~----------~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~ 76 (250)
.-.++...|++++|.++|+.+....|+. ..|. .++|+..|+...... .|. ...+..+-.++.+.|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 3456888999999999999887653332 3333 788888887554321 111 2366777778888888
Q ss_pred hhhHHHHHHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 77 REKIDALMLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+++|++.|++.......|. .......-.++.+.|+.++|..+|+++..
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888887765443354 23455666788888888888888888865
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0044 Score=49.48 Aligned_cols=62 Identities=6% Similarity=-0.122 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
..|+.+-.+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|.+.|++...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 388899999999999999999999877652 23667899999999999999999999998864
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0041 Score=49.69 Aligned_cols=130 Identities=11% Similarity=-0.045 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch------------------hHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF------------------TLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~------------------ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
...+..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455777778888899999999988876553 34443 6667777777777777777777766
Q ss_pred hhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH
Q 037164 123 ESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKG 202 (250)
Q Consensus 123 ~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 202 (250)
... .| .+...|..+-.+|...|++++
T Consensus 257 l~~---~p---------------------------------------------------~~~~a~~~lg~a~~~~g~~~~ 282 (338)
T 2if4_A 257 LTE---EE---------------------------------------------------KNPKALFRRGKAKAELGQMDS 282 (338)
T ss_dssp HHH---CT---------------------------------------------------TCHHHHHHHHHHHHTTTCHHH
T ss_pred HHh---CC---------------------------------------------------CCHHHHHHHHHHHHHcCCHHH
Confidence 432 01 123446666777788888888
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHH-HHhcCChhHHHHHHHHHHh
Q 037164 203 AEKTLRNWTSKNLPYDFGLPSSLIDA-HCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 203 A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~ 247 (250)
|...|++.... .+-+...+..|... ....+..+.+..+|.+|..
T Consensus 283 A~~~l~~al~l-~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 283 ARDDFRKAQKY-APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888776532 12234445545444 2334566677777776654
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.94 E-value=0.0045 Score=40.56 Aligned_cols=65 Identities=12% Similarity=-0.143 Sum_probs=55.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+...+..+-..|...|++++|...|++..... +.+...|..+-..|...|++++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445778888899999999999999999988543 34567888999999999999999999998765
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.94 E-value=0.0043 Score=51.77 Aligned_cols=104 Identities=10% Similarity=-0.063 Sum_probs=70.7
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI 92 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi 92 (250)
.+.+.|++++|...|+......|+...+.-+... +... -....|+.+-.+|.+.|++++|...++...+..
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~----~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK----ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH----HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHH----HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 4555666666666666655543332211111110 0000 115788899999999999999999999887753
Q ss_pred CCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 93 NGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 93 ~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+.+...|..+-.+|...|++++|...|++....
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 336778888899999999999999999998753
No 190
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.92 E-value=0.15 Score=42.95 Aligned_cols=190 Identities=7% Similarity=-0.059 Sum_probs=114.7
Q ss_pred hcc-ChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhc-CC
Q 037164 16 EVH-GVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN-REKIDALMLEMEEK-SI 92 (250)
Q Consensus 16 k~~-~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~-gi 92 (250)
+.| +++.|..+|+......|. =+.+.|..+|++.... .|++..|..-+.-..+.++ .+.+..+|+..... |.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~ 80 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN 80 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT
T ss_pred HcCcchHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC
Confidence 456 489999999998887665 2389999999999874 4799999998888777763 46778888876653 54
Q ss_pred CC-CchhHhhhHHHHH----hcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------------------HHHHHHH
Q 037164 93 NG-DQFTLGIRPSAYA----AASDIHGMDKIINMTESNPQMVLDFNLLAVL----------------------LYMAMTM 145 (250)
Q Consensus 93 ~p-~~~ty~~li~~~~----~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------------------~~~a~~~ 145 (250)
.| +...|...+..+. ..++++.+.++|++....| ...-..+|... +..|..+
T Consensus 81 d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~ 159 (493)
T 2uy1_A 81 YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQR 159 (493)
T ss_dssp CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHH
Confidence 44 5677777776554 3467889999999987652 22112222211 1122333
Q ss_pred HHHHHhhhhccCCchhhhc--------c---------hhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164 146 LKKSEGLIATKRNSSNAFE--------L---------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLR 208 (250)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 208 (250)
+.+........+. . .|. . ...+..+++..-...+.+...|...+.-+.+.|+++.|..+|+
T Consensus 160 y~~~~~~~~~~s~-~-~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 160 YQQIQPLIRGWSV-K-NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHHTCSH-H-HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhccH-H-HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333221111000 0 111 0 1122233333222334556778888888888999999999999
Q ss_pred HHHhC
Q 037164 209 NWTSK 213 (250)
Q Consensus 209 ~m~~~ 213 (250)
+....
T Consensus 238 rAi~~ 242 (493)
T 2uy1_A 238 RGIEM 242 (493)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98866
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.84 E-value=0.0078 Score=48.76 Aligned_cols=125 Identities=10% Similarity=-0.083 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhc--------------CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEK--------------SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--------------gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
...+..+-..|.+.|++++|.+.+++..+. ...| +..+|..+-.+|.+.|++++|.+.+++....
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345788888999999999999999987651 0222 4567888888899999999999888887653
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164 126 PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205 (250)
Q Consensus 126 ~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 205 (250)
.|+ +...|..+-.+|.+.|++++|..
T Consensus 303 ---~p~---------------------------------------------------~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 303 ---DPS---------------------------------------------------NTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp ---CTT---------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---Cch---------------------------------------------------hHHHHHHHHHHHHHccCHHHHHH
Confidence 111 23345667778888899999999
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHH
Q 037164 206 TLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQS 240 (250)
Q Consensus 206 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 240 (250)
.|++..... +.+...+..+-..+...++.+++.+
T Consensus 329 ~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 329 DLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877542 2355667777777777777766654
No 192
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.80 E-value=0.0016 Score=43.54 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 165 LKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
..++..++...++... +.+...|..+-.++...|+.++|+..|++..... +-+...+..+..+|.+.|++++|...
T Consensus 29 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555666666665542 2345778888899999999999999999987542 33567888999999999999999999
Q ss_pred HHHHHhc
Q 037164 242 INHAETK 248 (250)
Q Consensus 242 ~~~m~~~ 248 (250)
+++.++.
T Consensus 108 ~~~al~~ 114 (121)
T 1hxi_A 108 LRAWLLS 114 (121)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998753
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0075 Score=38.82 Aligned_cols=66 Identities=3% Similarity=-0.187 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++...+..+-..+.+.|++++|.+.|++..+. -+.+...|..+-.++.+.|++++|.+.+++....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678888999999999999999999987765 2336678888999999999999999999998753
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.63 E-value=0.0045 Score=40.81 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
...|..+-..|.+.|++++|...|++..... +-+..++..+..+|.+.|++++|...+++.++.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788888999999999999999987543 335777888888999999999999999887653
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.63 E-value=0.011 Score=47.80 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+..+|+.+-.+|.+.|++++|.+.+++..+. .| +...|..+-.+|.+.|++++|.+.|++...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678899999999999999999999987764 34 567888888999999999999999999865
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.62 E-value=0.019 Score=35.35 Aligned_cols=65 Identities=11% Similarity=-0.038 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+...+..+-..|.+.|++++|...+++..+.. +.+...|..+-.++.+.|++++|.+.+++....
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45778888899999999999999999877652 235678888899999999999999999987653
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0055 Score=39.49 Aligned_cols=60 Identities=15% Similarity=-0.049 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
.|..+-..+.+.|++++|...|++.... .+.+...|..+-.+|.+.|++++|...+++.+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444445555555555555555555432 22234445555555555555555555555544
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.60 E-value=0.025 Score=39.78 Aligned_cols=101 Identities=6% Similarity=-0.218 Sum_probs=72.2
Q ss_pred HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-- 90 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-- 90 (250)
.+.+.|++++|...|+......|+... . ++... .+.+...|+.+-.++.+.|++++|+..++.-.+.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~--~-~a~~~--------~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPP--E-EAFDH--------AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCT--T-SCCCH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcc--h-hhhhh--------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 466778888888888877766444111 0 00000 0012348999999999999999999999987663
Q ss_pred ---CCCCCc-hhH----hhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 91 ---SINGDQ-FTL----GIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 91 ---gi~p~~-~ty----~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
-+.|+. ..| ...-.++...|++++|...|++...
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 226654 577 8888999999999999999998743
No 199
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.54 E-value=0.019 Score=40.08 Aligned_cols=63 Identities=16% Similarity=0.030 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
...|..+-.+|.+.|++++|...+++.... .+.+...|..+-.+|...|++++|...|++.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR-EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356677777788888888888888877653 234566777777888888888888888877654
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.53 E-value=0.0075 Score=37.23 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
...+..+-..+.+.|++++|...|++..... +.+..++..+-..|.+.|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3566777788899999999999999987542 345677888889999999999999999887653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.38 E-value=0.089 Score=35.79 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~ 117 (250)
.++|...|++..+.|. |+ .+ |-..|...+.+++|.++|+.-.+.| +...+..|-..|.. .+|+++|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 6789999999999872 33 33 7777888888999999999887764 57788888888888 899999999
Q ss_pred HHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHH
Q 037164 118 IINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSE 150 (250)
Q Consensus 118 ~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~ 150 (250)
+|++.... |..........+ .++|...|++..
T Consensus 83 ~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 83 YYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 99999877 664444443333 566666666655
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.38 E-value=0.026 Score=47.54 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=73.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc-chhHHHHHHHHHhccCC---CCh-hhHHHHHHHHHhcCCHHHH
Q 037164 129 VLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE-LKDQLYRIWKHYGQTRK---VFN-KGYMTMMGLLLKLDDVKGA 203 (250)
Q Consensus 129 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A 203 (250)
.|+..+...++..+...++++........ |. -..-.+++++..+.... |+. .+++.|...|...|++++|
T Consensus 296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~-----~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA 370 (490)
T 3n71_A 296 KPSQEVVKEMIQFSKDTLEKIDKARSEGL-----YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEA 370 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34555555555555555555543221111 11 12223344444444322 444 8899999999999999999
Q ss_pred HHHHHHHHh---CCC---CC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 204 EKTLRNWTS---KNL---PY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 204 ~~~~~~m~~---~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+.++++... +-. .| ...+++.|-..|...|++++|+.++++.++
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998542 112 22 355689999999999999999999998764
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.16 E-value=0.018 Score=40.50 Aligned_cols=103 Identities=5% Similarity=-0.175 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh----------hhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhc-
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR----------EKIDALMLEMEEKSING-DQFTLGIRPSAYAAA- 109 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~----------~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~- 109 (250)
+++|...+++..+.+ +.+...|+.+-.++.+.+++ ++|+..|++..+. .| +...|..+-.+|...
T Consensus 18 feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhc
Confidence 455555555555442 34566666666666666554 4777777765553 44 345677777777665
Q ss_pred ----------CChhHHHHHHHHHhhCCCCCccHHHHHHH---HHHHHHHHHHHH
Q 037164 110 ----------SDIHGMDKIINMTESNPQMVLDFNLLAVL---LYMAMTMLKKSE 150 (250)
Q Consensus 110 ----------~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---~~~a~~~~~~~~ 150 (250)
|++++|.+.|++... +.|+...|... .++|-++.-+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMTAKAPQLHAEAY 145 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHhCHhccCccc
Confidence 378888888887763 34554444333 455555444443
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.11 E-value=0.008 Score=49.79 Aligned_cols=83 Identities=7% Similarity=-0.062 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHC---CCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----C-CCCCc-hhHhhhHHHHH
Q 037164 42 VGKAEMVVQEMKDM---GFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK-----S-INGDQ-FTLGIRPSAYA 107 (250)
Q Consensus 42 ~~~A~~~~~~m~~~---~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-i~p~~-~ty~~li~~~~ 107 (250)
.++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++...- | -.|++ .+|+.|-..|.
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 67888888776542 12233 578999999999999999999999986532 2 22444 57899999999
Q ss_pred hcCChhHHHHHHHHHhh
Q 037164 108 AASDIHGMDKIINMTES 124 (250)
Q Consensus 108 ~~~~~~~a~~~~~~m~~ 124 (250)
..|++++|+.++++...
T Consensus 394 ~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 394 GLENKAAGEKALKKAIA 410 (433)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 99999999999987654
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.09 E-value=0.051 Score=44.95 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCC---CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh---C--C-CCCC-CcchHHHHHHHHhcCChhH
Q 037164 169 LYRIWKHYGQTRK---VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTS---K--N-LPYD-FGLPSSLIDAHCKNGLLEK 237 (250)
Q Consensus 169 ~~~~~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~-~~~~-~~~~~~li~~~~~~g~~~~ 237 (250)
.+++++..+.... |+. .+++.+...|...|++++|+.++++... + | ..|+ ..+++.|-..|...|++++
T Consensus 321 ~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~e 400 (433)
T 3qww_A 321 CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAA 400 (433)
T ss_dssp HHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHH
Confidence 3344444444322 444 8899999999999999999999998642 1 2 2333 4568999999999999999
Q ss_pred HHHHHHHHHh
Q 037164 238 AQSLINHAET 247 (250)
Q Consensus 238 a~~~~~~m~~ 247 (250)
|+.++++.++
T Consensus 401 A~~~~~~Al~ 410 (433)
T 3qww_A 401 GEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.02 E-value=0.029 Score=46.36 Aligned_cols=83 Identities=7% Similarity=-0.173 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHCC---CCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----C-CCCCc-hhHhhhHHHHH
Q 037164 42 VGKAEMVVQEMKDMG---FARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK-----S-INGDQ-FTLGIRPSAYA 107 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~---~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-i~p~~-~ty~~li~~~~ 107 (250)
.++|+.++++.++.. +.|+ ..+++.|..+|...|++++|+.++++...- | --|++ .+|+.|-..|.
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 688888888887542 2333 578999999999999999999999976532 2 22333 57899999999
Q ss_pred hcCChhHHHHHHHHHhh
Q 037164 108 AASDIHGMDKIINMTES 124 (250)
Q Consensus 108 ~~~~~~~a~~~~~~m~~ 124 (250)
..|++++|+.++++...
T Consensus 383 ~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 383 HQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 99999999999887643
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.87 E-value=0.14 Score=39.67 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhc-----CChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhc-C
Q 037164 42 VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLT-----GNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAA-S 110 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~-~ 110 (250)
+..|...+++..+.+ |+ -..|.+|...|.+. |+.++|.+.|++-.+ +.| +..++...-..+++. |
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 788888999988864 55 56899999999995 999999999998766 456 377888888999985 9
Q ss_pred ChhHHHHHHHHHhhCCCCC--ccHHHHHHH-HHHHHHHHHHHH
Q 037164 111 DIHGMDKIINMTESNPQMV--LDFNLLAVL-LYMAMTMLKKSE 150 (250)
Q Consensus 111 ~~~~a~~~~~~m~~~~g~~--~~~~~~~~l-~~~a~~~~~~~~ 150 (250)
+.+.+.+.+++.... ... |+....+.+ -.+|..++.+..
T Consensus 255 d~~~a~~~L~kAL~a-~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAI-DPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHC-CGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcC-CCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 999999999998776 444 787777776 666666666544
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.85 E-value=0.049 Score=37.92 Aligned_cols=85 Identities=12% Similarity=-0.111 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhcCChhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG---NREKIDALMLEMEEKSING--DQFTLGIRPSAYAAASDIHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~~~~~~a~ 116 (250)
+..+.+.|++..+.|. ++..+-..+-.+++++. +.+++..+|++..+.+ .| +...+-.|--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 6677788888777654 78888888888899988 6669999999988764 34 2344445667889999999999
Q ss_pred HHHHHHhhCCCCCcc
Q 037164 117 KIINMTESNPQMVLD 131 (250)
Q Consensus 117 ~~~~~m~~~~g~~~~ 131 (250)
+.++.+.+ +.|+
T Consensus 92 ~y~~~lL~---ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ---TEPQ 103 (152)
T ss_dssp HHHHHHHH---HCTT
T ss_pred HHHHHHHh---cCCC
Confidence 99999874 4554
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.83 E-value=0.056 Score=37.95 Aligned_cols=90 Identities=9% Similarity=-0.095 Sum_probs=69.4
Q ss_pred HhhhccChhHHHHHHHHhhhhhc-cccccc---------------------hhHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 037164 13 LIFEVHGVEQAEIYFDNISKLLR-QCLFFG---------------------VGKAEMVVQEMKDMGFARRTIYCYIMMIL 70 (250)
Q Consensus 13 ~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~---------------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~ 70 (250)
-..|.+.+++|.+.++......| +...|. +++|+..|++..+.+ +-+..+|+.+-.+
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45677889999999998877744 444444 359999999998864 3467899999999
Q ss_pred HhhcC-----------ChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164 71 NYLTG-----------NREKIDALMLEMEEKSINGDQFTLGIRPSA 105 (250)
Q Consensus 71 ~~~~g-----------~~~~a~~~~~~m~~~gi~p~~~ty~~li~~ 105 (250)
|...| ++++|.+.|++..+ +.|+...|..-+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 98875 89999999997665 57888777555544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.79 E-value=0.068 Score=33.49 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=44.9
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhcCCCC-Cch-hHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 67 MMILNYLTGNREKIDALMLEMEEKSING-DQF-TLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 67 li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
....+.+.|++++|.+.++...+. .| +.. .|..+-.+|...|++++|.+.|++....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345677889999999999987765 34 446 7888888999999999999999987653
No 211
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.64 E-value=0.018 Score=40.49 Aligned_cols=62 Identities=15% Similarity=-0.113 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CCcch----HHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSK-----NLPY-DFGLP----SSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.|+.+-.++.+.|++++|+..+++.... .+.| +...| ...-.++...|++++|...|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999998753 1144 45677 8888999999999999999998865
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.54 E-value=0.043 Score=45.36 Aligned_cols=63 Identities=11% Similarity=-0.130 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh---C--C-CCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTS---K--N-LPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.+++.+...|...|++++|+.++++... + | ..| ...+++.|-..|...|++++|..++++.++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7889999999999999999999998542 1 1 222 245688999999999999999999998764
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.49 E-value=0.03 Score=35.23 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
.|..+-.+|.+.|++++|...|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444445555555555555555544
No 214
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.43 E-value=0.1 Score=33.37 Aligned_cols=72 Identities=7% Similarity=0.022 Sum_probs=52.6
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164 76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS 149 (250)
Q Consensus 76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~ 149 (250)
|.=++.+-++.+-..++.|++....+.+++|.|.+|+..|.++|+-++.. +.+...+|..++++..-+++++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqElkPtl~EL 96 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQELRPTLNEL 96 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHHHhhHHHHh
Confidence 34467777777778888999999999999999999999999999888664 3333456666655555555554
No 215
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.42 E-value=0.76 Score=36.46 Aligned_cols=190 Identities=6% Similarity=-0.135 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC--hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC-hhHHHHHH
Q 037164 43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN--REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD-IHGMDKII 119 (250)
Q Consensus 43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~-~~~a~~~~ 119 (250)
++++.+++.+...+ +.+..+|+---.++.+.|+ +++++.+++.+.+..- -|...|+.---.....|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 35666666666542 4466667666666666663 6677777777766532 255666666666666666 46777777
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhh-hccCCchhhhcchhHHHHHHHHHhccC---CCChhhHHHHHHHHH
Q 037164 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFELKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLL 195 (250)
Q Consensus 120 ~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~ 195 (250)
+.+... -+-|...|+.. ..++..+.... .+..... ..+.+++.++.+.... +-|...|+.+-..+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R----~~ll~~l~~~~~~~~~~~~----~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYR----SCLLPQLHPQPDSGPQGRL----PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHH--CSCCHHHHHHH----HHHHHHHSCCC------CC----CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHH--CCCCHHHHHHH----HHHHHHhhhcccccccccc----chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 766543 22344444333 11111111000 0000000 1244555555554442 233466665544444
Q ss_pred hc-----------CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH-----hcCChhHHHHHHHHHHh
Q 037164 196 KL-----------DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHC-----KNGLLEKAQSLINHAET 247 (250)
Q Consensus 196 ~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~ 247 (250)
+. +.++++.+.++++.. ..||. .|+.+-.+.. ..|..+++...+.++++
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 44 457888888888875 34454 4543332222 35667778888887764
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.37 E-value=0.79 Score=36.34 Aligned_cols=177 Identities=6% Similarity=-0.078 Sum_probs=109.3
Q ss_pred hhHHHHHHHHhhhh-hccccccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC-hhhHHHHH
Q 037164 20 VEQAEIYFDNISKL-LRQCLFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN-REKIDALM 84 (250)
Q Consensus 20 ~~~a~~~f~~~~~~-~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~ 84 (250)
++++..+++.+... +.+..+|+ .++++++++++.+.+ +-|-.+|+---.+..+.|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 67889999988776 34444554 479999999999875 5688999988888888998 58999999
Q ss_pred HHHHhcCCCCCchhHhhhHHHHHhc--------------CChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164 85 LEMEEKSINGDQFTLGIRPSAYAAA--------------SDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSE 150 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~~~~~--------------~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~ 150 (250)
+.+.+.... |...|+..-..+.+. +.++++.+.+++.... .+-|...|+.+ .-+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~--------r~ll 237 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH--------RWLL 237 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH--------HHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH--------HHHH
Confidence 999887543 778887776666554 3467777777776542 33345555333 1111
Q ss_pred -hhhhccCCchhhhcchhHHHHHHHHHhccCC--CChhhHHH--HH---HHHHhcCCHHHHHHHHHHHHh
Q 037164 151 -GLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFNKGYMT--MM---GLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--li---~~~~~~g~~~~A~~~~~~m~~ 212 (250)
........ +-...+.+++..+.+.+... |+. .|+. ++ .+.-..|..+++...+.++..
T Consensus 238 ~~~~~~~~~---~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 238 GAGSGRCEL---SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HSSSCGGGC---CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HhccCcccc---chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 00000000 00023444555555444432 444 3332 21 222245677788888888774
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.19 E-value=0.18 Score=40.55 Aligned_cols=64 Identities=6% Similarity=-0.055 Sum_probs=40.4
Q ss_pred CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|++..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455666666555555677777777777666654 565556555566666677777777766654
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.00 E-value=0.096 Score=33.67 Aligned_cols=64 Identities=14% Similarity=0.001 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN------LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
...+..|-..+.+.|+++.|...|+.....- -.+...++..|..+|.+.|+++.|..+++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445677788888999999999998866421 123456688888899999999999998888764
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.89 E-value=0.18 Score=32.33 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC------CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKS------INGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.+..-|-.|-..+.+.|+++.|...|++..+.- -.+....|..|-.+|.+.|+++.|...+++...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 456678888999999999999999999865531 124567888999999999999999999999864
No 220
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.43 E-value=1 Score=38.58 Aligned_cols=82 Identities=2% Similarity=-0.232 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC----------hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC-
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN----------REKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS- 110 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~- 110 (250)
-++|++.++++.+.+ +-+..+|+.--.++.+.|+ +++++++++.+.+.. +-+..+|+.---.+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 478899999998864 3456778777777777777 899999999988753 236678888777888888
Q ss_pred -ChhHHHHHHHHHhhC
Q 037164 111 -DIHGMDKIINMTESN 125 (250)
Q Consensus 111 -~~~~a~~~~~~m~~~ 125 (250)
+++++.++++++.+.
T Consensus 123 ~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 123 PNWARELELCARFLEA 138 (567)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh
Confidence 668999998888653
No 221
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.25 E-value=0.28 Score=31.32 Aligned_cols=60 Identities=2% Similarity=-0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS 104 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~ 104 (250)
+..+-++.+...++.|++.+..+.+.+|-|.+++..|.++|+-.+.. +.+...+|.-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34445667777889999999999999999999999999999998876 4444556766654
No 222
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.08 E-value=0.5 Score=31.94 Aligned_cols=71 Identities=7% Similarity=0.012 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164 77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS 149 (250)
Q Consensus 77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~ 149 (250)
.=+..+-++.+-..++.|++.....-+++|-+.+|+..|.++|+-++.+ +.+...+|..++++..-.++++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqElkPtl~EL 139 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHHHhhHHHHh
Confidence 3356677777778899999999999999999999999999999998764 4445566776766666666554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.74 E-value=0.27 Score=30.95 Aligned_cols=63 Identities=13% Similarity=-0.000 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 185 KGYMTMMGLLLKLDD---VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 185 ~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
..+..+-.++...++ .++|..++++.... -+-++.....+-..+.+.|++++|...|+++.+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444433333 46666666665532 2234455555556666666666666666666543
No 224
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.58 E-value=0.37 Score=41.31 Aligned_cols=103 Identities=4% Similarity=-0.044 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhhhh-hccccccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHH
Q 037164 20 VEQAEIYFDNISKL-LRQCLFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALM 84 (250)
Q Consensus 20 ~~~a~~~f~~~~~~-~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~ 84 (250)
++++.++++.+... +.+..+|. .++|.+.++++.+.+ +-|..+|+---....+.| .++++.+.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 89999999998877 33444554 489999999999875 457899999888888999 899999999
Q ss_pred HHHHhcCCCCCchhHhhhHHHHHhc--------------CChhHHHHHHHHHhh
Q 037164 85 LEMEEKSINGDQFTLGIRPSAYAAA--------------SDIHGMDKIINMTES 124 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~~~~~--------------~~~~~a~~~~~~m~~ 124 (250)
+.+.+.+.. |...|+..-..+.+. +.++++.+.+++...
T Consensus 168 ~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 168 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 988776443 778888777666663 456788888887654
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.55 E-value=0.77 Score=36.96 Aligned_cols=142 Identities=8% Similarity=-0.123 Sum_probs=87.5
Q ss_pred CCCCCchhHhhhHHHHHh--cC---ChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc
Q 037164 91 SINGDQFTLGIRPSAYAA--AS---DIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE 164 (250)
Q Consensus 91 gi~p~~~ty~~li~~~~~--~~---~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (250)
+.+.|...|...+.+... .+ +..+|..+|++..+ ..|+ ...+..+ +...+ ......+... .
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~l---a~a~~--~~~~~~~~~~-~---- 255 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEK---ALVDI--VRHSQHPLDE-K---- 255 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHH---HHHHH--HHHHHSCCCH-H----
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHH---HHHHH--HHhccCCCch-h----
Confidence 356678888888866543 23 35788999998764 3344 2333222 11111 1111111111 0
Q ss_pred chhHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164 165 LKDQLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 242 (250)
....+.++.+..... .+.+...|.++-..+...|+++.|...+++....+ |+...|..+-..+.-.|++++|.+.+
T Consensus 256 ~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122233333322222 23555778777777777899999999999998765 67666777778888999999999999
Q ss_pred HHHHh
Q 037164 243 NHAET 247 (250)
Q Consensus 243 ~~m~~ 247 (250)
++..+
T Consensus 334 ~~Alr 338 (372)
T 3ly7_A 334 LTAFN 338 (372)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.45 E-value=0.83 Score=31.16 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=72.6
Q ss_pred ccChhHHHHHHHHhhhhhccccccc--------hhHHHHHHHHHHHCCCCcc--------------------HHHHHHHH
Q 037164 17 VHGVEQAEIYFDNISKLLRQCLFFG--------VGKAEMVVQEMKDMGFARR--------------------TIYCYIMM 68 (250)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~y~--------~~~A~~~~~~m~~~~~~p~--------------------~~~y~~li 68 (250)
-|.+++..++..+.... .+..-|| ...+..+|+.+-.-|---| ..-.+.-+
T Consensus 20 dG~v~qGveii~k~~~s-sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~AL 98 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL 98 (172)
T ss_dssp TTCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC-CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence 47778888888776654 3444555 3334444444443331112 23345555
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~ 129 (250)
......|+-+.-.++..++.. +.+|++...-.+-++|.+.|+..++.+++.+.... |++
T Consensus 99 d~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 666667777777777777533 46678888888899999999999999999999888 875
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.01 E-value=1.7 Score=30.92 Aligned_cols=50 Identities=16% Similarity=0.015 Sum_probs=42.6
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
......|+++.|.++.+++ .+...|..|-+...+.|+++-|+++|.....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3445789999999998876 3688999999999999999999999988764
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.45 E-value=2.5 Score=34.22 Aligned_cols=72 Identities=7% Similarity=-0.151 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHHH
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNLL 135 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~~ 135 (250)
+...++.++...|+++++...+...... -+-+...|..+|.++.+.|+..+|.+.|+..... -|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4566788889999999999998887654 3347789999999999999999999999986432 3899987763
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.30 E-value=0.46 Score=32.98 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=45.1
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 182 VFNKGYMTMMGLLLKLD---DVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
++..+...+--++++.+ +++++..+|+...... .| ....+-.|--+|.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55666666666777777 6668888888877654 22 234445566677888888888888888765
No 230
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.83 E-value=0.91 Score=30.72 Aligned_cols=60 Identities=2% Similarity=-0.119 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS 104 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~ 104 (250)
+..+-++.+...++.|++.+..+-+.+|-|.+|+..|.++|+-.+.+ +.+...+|.-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34444566677789999999999999999999999999999998876 4445666766654
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.42 E-value=1.4 Score=29.43 Aligned_cols=81 Identities=14% Similarity=-0.084 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh---HHHHHHHHHhcCCCC-Cch-hHhhhHHHHHhcCChhHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK---IDALMLEMEEKSING-DQF-TLGIRPSAYAAASDIHGMD 116 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~---a~~~~~~m~~~gi~p-~~~-ty~~li~~~~~~~~~~~a~ 116 (250)
+..+.+.|++....|. |+..+--.+..++.++.+... +..++.+....+ .| +.. ..-.|--++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 5566667776666554 677777777788888888776 888888877653 23 222 2233558999999999999
Q ss_pred HHHHHHhh
Q 037164 117 KIINMTES 124 (250)
Q Consensus 117 ~~~~~m~~ 124 (250)
+.++.+..
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.27 E-value=3 Score=36.87 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=38.0
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.....|+++.|.++.+.+ .+...|..|-..+.+.++++.|.++|..+..
T Consensus 661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 345677888888776532 4678899999999999999999999988754
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.75 E-value=1.5 Score=38.85 Aligned_cols=58 Identities=7% Similarity=-0.081 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.+...|..|-..+.+.|+++.|.+.|..+.. |..+...|...++.+...++-+.....
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5678999999999999999999999997654 345555666677777666666555544
No 234
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.19 E-value=2.7 Score=26.14 Aligned_cols=66 Identities=6% Similarity=-0.060 Sum_probs=49.9
Q ss_pred CccHHHHHHHHHHHhhcCC---hhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 58 ARRTIYCYIMMILNYLTGN---REKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
++|+..+..+-.++...++ .++|..++++..+. .|+. .....+-..+.+.|++++|...|+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567777777777765554 68999999987663 5555 45555568999999999999999998754
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.27 E-value=7.4 Score=34.54 Aligned_cols=112 Identities=13% Similarity=-0.014 Sum_probs=72.1
Q ss_pred hhhHhhhccC-hhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHC------CCCccHH------
Q 037164 10 RLNLIFEVHG-VEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDM------GFARRTI------ 62 (250)
Q Consensus 10 ~l~~~~k~~~-~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~------~~~p~~~------ 62 (250)
++..+.-.++ .+.|..+|+++....|...++- --+|.++.++..+. ...+...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 4444444566 5779999999887755433221 22344555444321 1222211
Q ss_pred HH-HHHH----HHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 63 YC-YIMM----ILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 63 ~y-~~li----~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
.+ ..|+ .-+...|+++.|+++-++-.. +.|+ -.||-.|..+|.+.||++.|+-.++.+-
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 1122 335669999999999996544 5665 5799999999999999999999999873
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.26 E-value=2.8 Score=32.57 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc-CChhHHHHHHHHHHhc
Q 037164 184 NKGYMTMMGLLLK-----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN-GLLEKAQSLINHAETK 248 (250)
Q Consensus 184 ~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 248 (250)
-..|+.+...|.+ .|+.++|...|++...-...-+..++...-+.+++. |+.+.+.+.+++.++.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 4578888888888 499999999999988644333477788888888884 9999999999987753
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.66 E-value=1.8 Score=35.15 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..++..+...|+.++|...+..+.. ..+.+...|..||.+|.+.|+..+|.+.|++..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~-~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF-EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777777777777776653 2445666777777777777777777777766543
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.68 E-value=8.3 Score=26.30 Aligned_cols=66 Identities=2% Similarity=-0.138 Sum_probs=40.8
Q ss_pred CccHHHHHHHHHHHhhcCChh---hHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 58 ARRTIYCYIMMILNYLTGNRE---KIDALMLEMEEKSINGDQF-TLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~~---~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.|+..+--....++.++.+.+ ++..++++....+-. +.. ..--|--++.+.|+++.|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456666555666666666554 566777776654211 222 222345788888888888888888764
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.83 E-value=7.3 Score=27.67 Aligned_cols=78 Identities=10% Similarity=-0.075 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------------CCCcchHH
Q 037164 165 LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP--------------------YDFGLPSS 224 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------------~~~~~~~~ 224 (250)
..|+++.+++..+.. .+...|..|-......|+++-|++.|++...-+.- -...-++.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~ 94 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGS 94 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHH
Confidence 566777777776655 34567777777777777777777777663311000 01123455
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 037164 225 LIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 225 li~~~~~~g~~~~a~~~~~~ 244 (250)
-...+.-.|+++++.+++.+
T Consensus 95 af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 95 MLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 56666677777777777654
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.19 E-value=7 Score=26.03 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037164 193 LLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~ 211 (250)
++.|.|++++|.+.++.+.
T Consensus 83 g~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4445555555555554444
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.89 E-value=13 Score=33.04 Aligned_cols=53 Identities=26% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
+-|...|+++-|..+-++... --+.+..+|..|..+|...|+++.|.-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~-~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE-LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh-cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456678999999999988773 35557888999999999999999998777654
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.78 E-value=2.7 Score=29.11 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+++++|.++|+.+.+.+... ..+|..--+--.+.|+++.|.+++.+.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 67777777777776543333 556666666666777888887777776654
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.18 E-value=14 Score=24.84 Aligned_cols=84 Identities=13% Similarity=-0.036 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHhc--cCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHH
Q 037164 165 LKDQLYRIWKHYGQ--TRKVFNKGYMTMMGLLLKLDD---VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQ 239 (250)
Q Consensus 165 ~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 239 (250)
..+++..+.+.+.. .+.++..+--..--++.+..+ ...+..+++.....+..-....+--|--|+.+.|+++.|.
T Consensus 19 ~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 19 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHH
Confidence 55566666555533 222555444444445555544 4567777777765442112334555666788888888888
Q ss_pred HHHHHHHhc
Q 037164 240 SLINHAETK 248 (250)
Q Consensus 240 ~~~~~m~~~ 248 (250)
++.+.+++.
T Consensus 99 ~y~d~lL~~ 107 (134)
T 3o48_A 99 RYVDTLFEH 107 (134)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 888877653
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.50 E-value=12 Score=23.81 Aligned_cols=84 Identities=7% Similarity=-0.160 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
-++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-.| +-.+.|..+++...+..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHH
Confidence 4677777777777654 3333334445678889999988877632 37888888555 55678888888888877
Q ss_pred HhhCCCCCccHHHH
Q 037164 122 TESNPQMVLDFNLL 135 (250)
Q Consensus 122 m~~~~g~~~~~~~~ 135 (250)
+..+ |- |....|
T Consensus 94 la~s-g~-p~~q~F 105 (115)
T 2uwj_G 94 LGGS-SD-PALADF 105 (115)
T ss_dssp HHTC-SS-HHHHHH
T ss_pred HHhC-CC-HHHHHH
Confidence 7765 43 444433
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.05 E-value=13 Score=23.77 Aligned_cols=84 Identities=8% Similarity=-0.111 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM 121 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~ 121 (250)
-++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-.| +-.+.|..+++...+..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHH
Confidence 4677777777777654 3333334445678899999998887643 37888888655 55677888888888877
Q ss_pred HhhCCCCCccHHHH
Q 037164 122 TESNPQMVLDFNLL 135 (250)
Q Consensus 122 m~~~~g~~~~~~~~ 135 (250)
+..+ |- |....|
T Consensus 95 la~s-g~-p~~q~F 106 (116)
T 2p58_C 95 LARS-QD-PRIQTF 106 (116)
T ss_dssp HTTC-CC-HHHHHH
T ss_pred HHhC-CC-HHHHHH
Confidence 7665 33 444443
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.53 E-value=11 Score=31.01 Aligned_cols=83 Identities=7% Similarity=-0.038 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHCCC-Cc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhcCChhHHHH
Q 037164 42 VGKAEMVVQEMKDMGF-AR-RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAASDIHGMDK 117 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~-~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~~~~~~a~~ 117 (250)
+++-.+......+... .. -..+...+...|.+.|++++|.+.+.++...-..+ -...|-.+|..+...+|+..|..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444444322 11 23477889999999999999999999998763333 34567778899999999999999
Q ss_pred HHHHHhh
Q 037164 118 IINMTES 124 (250)
Q Consensus 118 ~~~~m~~ 124 (250)
.+++...
T Consensus 190 ~~~ka~~ 196 (429)
T 4b4t_R 190 KLEAVNS 196 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.50 E-value=35 Score=28.09 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=88.9
Q ss_pred CChhhHHHHHHHHHhc-----CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164 75 GNREKIDALMLEMEEK-----SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS 149 (250)
Q Consensus 75 g~~~~a~~~~~~m~~~-----gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~ 149 (250)
|+++.|.+-+-.+.+. +..........++..|...++++...+.+..+....|..+...+ .++..+.+.+...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 5666666666555432 23334455666778888888888887777766544344433332 2233333333221
Q ss_pred HhhhhccCCchhhhcchhHHHHHHHHHhccCC-C---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 037164 150 EGLIATKRNSSNAFELKDQLYRIWKHYGQTRK-V---------FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD- 218 (250)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~- 218 (250)
. .. +.+.-......... . -......|...+...|++.+|.+++..+...-...+
T Consensus 108 ~-----~~----------d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~ 172 (445)
T 4b4t_P 108 K-----SL----------DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME 172 (445)
T ss_dssp C-----TT----------HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred C-----ch----------hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence 1 00 00001111111111 0 112234567888999999999999999864322222
Q ss_pred ----CcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 219 ----FGLPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 219 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
+..+...++.|...+++..|..+..++.
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467788889999999999999988764
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.33 E-value=22 Score=25.77 Aligned_cols=59 Identities=10% Similarity=-0.020 Sum_probs=48.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH
Q 037164 74 TGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN 133 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~ 133 (250)
.+.......+|..|.++||--.. ..|-..-..+-..|++.+|.++|+.-.+. +-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHHH
Confidence 44477999999999999886544 56788888999999999999999998877 7777544
No 249
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=72.16 E-value=7.2 Score=26.54 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 169 LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
+..+.+.++..+...+..-..++..+...+..-.|.++++.+...+...+..|...-++.+...|-+.
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34445556655554455566778888877788889999999987777777777777788888887654
No 250
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.05 E-value=30 Score=25.08 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 198 DDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 198 g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
+...++.++|..|..+|+--. +..|...-..+...|++++|..+|+.=++++
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 346688888888887777544 3446666677777888888888888766543
No 251
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=68.20 E-value=9.1 Score=26.23 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=48.0
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 169 LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
+..+.+.++..+...+.--..++..+...+..-.|.++++.+...+...+..|.-.-++.+...|-+.
T Consensus 11 ~~~~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 11 LERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 33444555555544455566788888888788899999999987777777777777778888877653
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.90 E-value=13 Score=28.44 Aligned_cols=51 Identities=27% Similarity=0.306 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 193 LLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 193 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
.+.+.|++++|+.-...-. +..+-|...-..|++.+|-.|+++.|.+-++-
T Consensus 6 ~ll~~g~L~~al~~~~~~V-R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445555555555555544 22344555555555555555555555554443
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.34 E-value=28 Score=23.71 Aligned_cols=47 Identities=13% Similarity=-0.059 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 201 KGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 201 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
.++..+++.....+..-.....--|--|+.+.|++++|.++.+.+++
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555554322111122223344456666666666666665554
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.18 E-value=47 Score=25.91 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh-hHHHHHHHHHh----cCC--CCCchhHhhhHHHHHhcCChhH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE-KIDALMLEMEE----KSI--NGDQFTLGIRPSAYAAASDIHG 114 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~-~a~~~~~~m~~----~gi--~p~~~ty~~li~~~~~~~~~~~ 114 (250)
.+.|.-+.+...+.+.+++...-.-|+..+.....-+ .-.++++.+.. .|- .-|+.....+-..|.+.+++.+
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~ 152 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE 152 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence 7777778888888888999888888888887754322 33455555543 221 1244556666688888888888
Q ss_pred HHHHH
Q 037164 115 MDKII 119 (250)
Q Consensus 115 a~~~~ 119 (250)
|+.-|
T Consensus 153 A~~H~ 157 (312)
T 2wpv_A 153 AERYF 157 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.35 E-value=65 Score=27.21 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc------hhHhhh-HHHHHhcCChhHHHHHHHHHhh
Q 037164 61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ------FTLGIR-PSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~------~ty~~l-i~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+..+|.++..|...+.++.|..+..... ++.+. .+|.-. -..+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888999999999999988653 22111 223222 2555667888899888887654
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=63.57 E-value=34 Score=23.70 Aligned_cols=57 Identities=4% Similarity=-0.086 Sum_probs=43.3
Q ss_pred cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH
Q 037164 74 TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF 132 (250)
Q Consensus 74 ~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 132 (250)
.+|+++|.++|+.+.+. .+-=...|-..-.-=.+.|++++|.+++...... +-.|..
T Consensus 73 i~D~d~aR~vy~~a~~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~-~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER-GAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBCHH
T ss_pred hcCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCcHH
Confidence 47999999999998765 2212666766667778899999999999998866 555553
No 257
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=63.54 E-value=9.4 Score=26.59 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=47.1
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhcCChh
Q 037164 169 LYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK--NLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
++++.+.+++.+...+.--..+++.+...+..-.|.++++.+... +...+..|.-.-++.+...|-+.
T Consensus 17 ~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 17 LERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334445555555544455567788888888888899999998876 66666667666777777777654
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.51 E-value=20 Score=25.15 Aligned_cols=63 Identities=10% Similarity=-0.111 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCC-------cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDF-------GLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+---+..+...|.++.|+-+...+.+. +..|++ .+...+-+++...|++..|...|++.++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44455667888899999999988886643 345553 2567788899999999999999998754
No 259
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=62.52 E-value=44 Score=24.65 Aligned_cols=80 Identities=9% Similarity=0.093 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 167 DQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
.-++++...+..... .+..-|--+=--|... .+.+.++|..|..+|+--. ...|...-..+-..|++.+|..+|+.
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555555544433 3333343333333332 3577888888888877554 34466667777778899999988887
Q ss_pred HHhc
Q 037164 245 AETK 248 (250)
Q Consensus 245 m~~~ 248 (250)
=+++
T Consensus 176 Gi~~ 179 (223)
T 4aez_C 176 GKRM 179 (223)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 260
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=61.84 E-value=51 Score=25.64 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC--hhHHHHHHHHHHhcC
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL--LEKAQSLINHAETKK 249 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 249 (250)
...+|.=|...|+.++|.+.++++......+ ..+..++..++-+.++ .+....++..+.+.|
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 4577888888999999999999986321211 2333344444444332 455667777776655
No 261
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.33 E-value=39 Score=23.60 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
++++...|..... ++-|+.--..-|. |+.. .+....+|..|.++||--.. ..|-..-..+-..|++.+|.++|+
T Consensus 46 LErc~~~f~~~~~--YknD~RyLklWl~-ya~~--~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 46 LERAVEALQGEKR--YYSDPRFLNLWLK-LGRL--CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHHTTTCGG--GTTCHHHHHHHHH-HHHH--CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhhhh--hccCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666655433 4556544444442 3222 25588899999999886554 567778888889999999999999
Q ss_pred HHhhCCCCCccHHH
Q 037164 121 MTESNPQMVLDFNL 134 (250)
Q Consensus 121 ~m~~~~g~~~~~~~ 134 (250)
.-... +-.|-...
T Consensus 121 ~Gi~~-~A~P~~~L 133 (164)
T 2wvi_A 121 EGIQQ-KAEPLERL 133 (164)
T ss_dssp HHHHT-TCBSHHHH
T ss_pred HHHHc-CCCcHHHH
Confidence 98887 88887654
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.32 E-value=11 Score=30.83 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
+...+-.-|.+.|+.+.|.+.|.++......+. ...+-.+|+.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555555555554322222 233445555555555555555555544
No 263
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.23 E-value=39 Score=23.59 Aligned_cols=48 Identities=6% Similarity=0.036 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCCC-cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 201 KGAEKTLRNWTSKNLPYDF-GLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 201 ~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+.+.++|..|.++|+--.. ..|...-..+-..|++.+|..+|+.-+++
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4466677777777664433 33555555566677777777777765554
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.41 E-value=40 Score=23.17 Aligned_cols=48 Identities=8% Similarity=0.002 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 201 KGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 201 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
+++.++|..|.++|+--. +..|...-..+-..|++++|..+++.-+++
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346667777766665433 333555555566667777777776665544
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.62 E-value=42 Score=23.10 Aligned_cols=86 Identities=6% Similarity=-0.055 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
++++...|..... ++-|+.--..-|. |+.. .++...+|..|.++||--.. ..|-..-..+-..|++.+|.++|+
T Consensus 51 LErc~~~f~~~~~--YknD~RyLklWl~-ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 51 LEHLMKEFLDKKK--YHNDPRFISYCLK-FAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHTTCGG--GTTCHHHHHHHHH-HHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccccc--ccCCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666665554433 3455443333333 2222 34589999999999886544 567888888899999999999999
Q ss_pred HHhhCCCCCccHH
Q 037164 121 MTESNPQMVLDFN 133 (250)
Q Consensus 121 ~m~~~~g~~~~~~ 133 (250)
.-.+. +-.|-..
T Consensus 126 ~Gi~~-~A~P~~r 137 (152)
T 4a1g_A 126 RGIQN-QAEPREF 137 (152)
T ss_dssp HHHHT-TCBSHHH
T ss_pred HHHHc-CCccHHH
Confidence 98777 7777644
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=57.84 E-value=40 Score=22.64 Aligned_cols=72 Identities=1% Similarity=-0.166 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHhhcCCh---hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH
Q 037164 58 ARRTIYCYIMMILNYLTGNR---EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF 132 (250)
Q Consensus 58 ~p~~~~y~~li~~~~~~g~~---~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 132 (250)
.|++.|--....++.++.+. .++..++.+..+.+-.-.-..+--|--++.+.|+++.|.+..+.+.. ++|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCC
Confidence 45555555555566666655 46788888877654111223344466899999999999999998874 45553
No 267
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.80 E-value=37 Score=22.22 Aligned_cols=45 Identities=7% Similarity=-0.178 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.-+|+.+.+..+.|++..--.-|......+|++.|.++...+...
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 345556666677666555555566677778888888887776543
No 268
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.56 E-value=54 Score=24.08 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHCCCCccHH--HH-----HHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 42 VGKAEMVVQEMKDMGFARRTI--YC-----YIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~--~y-----~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
++.|+.+|+.+.+.--.|+.. .- -..+..|.+.|.+++|.++++...+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 788888888886643212211 11 23334567788888888888765553
No 269
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=56.14 E-value=21 Score=22.03 Aligned_cols=82 Identities=7% Similarity=0.010 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh---cCChhhHHHHHHHHHh--cCCCC
Q 037164 20 VEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYL---TGNREKIDALMLEMEE--KSING 94 (250)
Q Consensus 20 ~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~--~gi~p 94 (250)
+++|+++...|....+.+.+-+-.-|..+|.-+.+.|++.++..-.+- +--. .|-.++....-+.|.+ +-+..
T Consensus 13 IdKALDFI~~M~tSas~P~sMdESTAKGifKyL~elGvPas~~dv~aR--g~qegWn~gFT~k~~gWAek~esGer~vIK 90 (115)
T 2es9_A 13 IEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVAR--GEQEGWNPEFTKKVAGWAEKVASGNRILIK 90 (115)
T ss_dssp HHHHHHHHHTSCTTCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHh--cccccCChhHHHHHHHHHHHhccCCeeeec
Confidence 467888888887766666666677888899999999987665432221 1111 1222344555555543 22344
Q ss_pred CchhHhhhH
Q 037164 95 DQFTLGIRP 103 (250)
Q Consensus 95 ~~~ty~~li 103 (250)
|+.-|++.+
T Consensus 91 nPEyFstYM 99 (115)
T 2es9_A 91 NPEYFSTYM 99 (115)
T ss_dssp SGGGSCHHH
T ss_pred ChHHHHHHH
Confidence 555555544
No 270
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.00 E-value=18 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
..+|.=|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555555555555555554
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.43 E-value=82 Score=25.50 Aligned_cols=125 Identities=10% Similarity=0.016 Sum_probs=79.1
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhhcc-ccccc---------------------hhHHHHHHHHHHHCCCCccHHHH--
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG---------------------VGKAEMVVQEMKDMGFARRTIYC-- 64 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~---------------------~~~A~~~~~~m~~~~~~p~~~~y-- 64 (250)
.+-..|.+.|+.++..+++.......+. +.++. ++-..+.+++..+. ..+|
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~r~flr 98 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-----KRTFLR 98 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----TCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3456788888888888888776554111 11221 33333333333332 1334
Q ss_pred ----HHHHHHHhhcCChhhHHHHHHHHHhc--CCCCC---chhHhhhHHHHHhcCChhHHHHHHHHHhhCC-CCCccHHH
Q 037164 65 ----YIMMILNYLTGNREKIDALMLEMEEK--SINGD---QFTLGIRPSAYAAASDIHGMDKIINMTESNP-QMVLDFNL 134 (250)
Q Consensus 65 ----~~li~~~~~~g~~~~a~~~~~~m~~~--gi~p~---~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-g~~~~~~~ 134 (250)
.-|...|...|++.+|.+++..+.+. .+... ...|-.-+..|...+++.++...+....... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 26788999999999999999988764 22211 1345666788999999999999998875331 33356655
Q ss_pred HHHH
Q 037164 135 LAVL 138 (250)
Q Consensus 135 ~~~l 138 (250)
-+.+
T Consensus 179 ~a~i 182 (394)
T 3txn_A 179 QGAL 182 (394)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 272
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.41 E-value=12 Score=25.41 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=44.8
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 173 WKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 173 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
.+.++..+...+.--..++..+...+ .-.|.++++.+...+...+..|.-.-++.+...|-+.
T Consensus 7 ~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 34455555444444566777777777 7789999999998777777777777777888877653
No 273
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=55.21 E-value=54 Score=23.35 Aligned_cols=55 Identities=7% Similarity=-0.119 Sum_probs=44.1
Q ss_pred HHhhcCChhhHHHHHHHHHhcCCCCC-----------------chhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 70 LNYLTGNREKIDALMLEMEEKSINGD-----------------QFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 70 ~~~~~g~~~~a~~~~~~m~~~gi~p~-----------------~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
+|-+..++.+|...+..+...++..| ...|+.+-..+...|+.++|.+.+..--.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 67789999999999999886666522 24577788999999999999999876643
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.70 E-value=39 Score=21.57 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
++++.+.|++++|..+.+.. ..||...|.+|-. .+.|.-++++.-+.++..+|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 35666777777777666432 2566666655532 35566666666555555444
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.68 E-value=47 Score=23.78 Aligned_cols=25 Identities=4% Similarity=0.006 Sum_probs=18.3
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL 33 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~ 33 (250)
+.|+.-++.|+++....+++.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5677778888888888777765544
No 276
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.20 E-value=27 Score=24.27 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CCcchHHHHH------HHHhcCChhHHHHHHHHHHh
Q 037164 194 LLKLDDVKGAEKTLRNWTSKNLPY--DFGLPSSLID------AHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 194 ~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~ 247 (250)
+...|++-+|-++|+..=.....+ ....|-.||+ ...+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345599999999998865343334 3455666666 23447999999999988765
No 277
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.77 E-value=13 Score=25.43 Aligned_cols=62 Identities=6% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHhccCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 175 HYGQTRKVFNKGYMTMMGLLLKLD-DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 175 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
.++..+...+.--..++..+...+ ..-.|.++++.+...+...+..|...-++.+...|-+.
T Consensus 7 ~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344444433444556777777766 67789999999988777777777777777888877654
No 278
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=52.32 E-value=0.6 Score=39.20 Aligned_cols=161 Identities=8% Similarity=0.024 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164 59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL 138 (250)
Q Consensus 59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 138 (250)
-|+..|..+|.+..+.|.+++-.+++.-.++. .-++..=+.|+-+|++.+++.+.++++..--.. ++
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A-~i---------- 147 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNA-HI---------- 147 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSS-CT----------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcCCCcc-cH----------
Confidence 45677899999999999999999988854443 335566678999999999987766554221111 11
Q ss_pred HHHHHHHHHHHHhhhhccCCchhhhc-------------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164 139 LYMAMTMLKKSEGLIATKRNSSNAFE-------------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK 205 (250)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 205 (250)
-.-+.++|++-. -..... .|+ +.++...+.+.-+.. -++.||--+-.+|...+.+.-|.-
T Consensus 148 q~VGDrcf~e~l----YeAAKi-lys~isN~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 148 QQVGDRCYDEKM----YDAAKL-LYNNVSNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HHHHHHHHHSCC----STTSST-TGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HHHHHHHHHccC----HHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHH
Confidence 011122222211 000001 111 444444433332222 455778877788888887776655
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 206 TLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 206 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
.--.+.- .+.-...|+.-|-+.|.+++-..+++.
T Consensus 221 cGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 221 CGLHIVV-----HADELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp HHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred hcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5444441 122233455556666666665555543
No 279
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.77 E-value=36 Score=21.67 Aligned_cols=52 Identities=10% Similarity=-0.153 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
+++.+.|++++|..+.+.. ..||...|-+|- -.+.|.-++++.-+.++..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 5666667777776665432 256666555443 235666666666655555544
No 280
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.10 E-value=36 Score=28.19 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc--------hH-HHHHHHHhcCChhHHHHHHHHHHhc
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL--------PS-SLIDAHCKNGLLEKAQSLINHAETK 248 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--------~~-~li~~~~~~g~~~~a~~~~~~m~~~ 248 (250)
...|.++..|.+.|+.+.|..+++.+...+..|+... |. -+-+-++..+++.+|.+.+..+.++
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3467888999999999999999999998776443332 22 3445567789999999988877653
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.87 E-value=1.7e+02 Score=27.34 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHhcCChhHHHHHHHH
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD----FGLPSSLIDAHCKNGLLEKAQSLINH 244 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 244 (250)
-|..++..|-+.|.++.+.++-+...+...+-+ ...|..+.+++...|++++|...+-.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 355555556666666665555554432211111 11455566666666666666555533
No 282
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.85 E-value=22 Score=23.72 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=43.0
Q ss_pred HHhccCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 175 HYGQTRKVFNKGYMTMMGLLLKLD-DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 175 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
.++..+...+.--..++..+...+ ..-.|.++++.+...+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344444444444557777777776 77889999999988777777777777777777777653
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.60 E-value=28 Score=23.05 Aligned_cols=67 Identities=6% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC--hhHHHHHHHHHhhCCCCCcc
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD--IHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~--~~~a~~~~~~m~~~~g~~~~ 131 (250)
..+.++.=|...|+.++|.+.++++..-.+. ...++..+..++=+.++ .+.+.+++..+... |+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCH
Confidence 4567888899999999999999998632221 22334445555555432 46788888888766 55433
No 284
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=48.16 E-value=26 Score=19.74 Aligned_cols=34 Identities=18% Similarity=0.025 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHH-HhcC
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAH-CKNG 233 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g 233 (250)
.++|++.|.+|......+..-+|.-.|+.. ++-.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 367888888888654555578899998888 6543
No 285
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.16 E-value=35 Score=22.31 Aligned_cols=45 Identities=4% Similarity=0.052 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164 46 EMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK 90 (250)
Q Consensus 46 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 90 (250)
.-+|+++.+..+.|++..--.-|......++++.|.++...+...
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 446666777778777666666666678899999999999987764
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.22 E-value=83 Score=23.18 Aligned_cols=87 Identities=7% Similarity=0.001 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN 120 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~ 120 (250)
++++...|..... ++-|..--..-| -|+.. .+....+|..|.++||--.. ..|-..-..+-..|++.+|.++|+
T Consensus 100 LErc~~~F~~~~r--YknD~RyLklWl-~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 100 LERCTREFVRNPL--YKDDVRYLRIWM-QYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHHTTTCGG--GTTCHHHHHHHH-HHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccccc--ccCCHHHHHHHH-HHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766544 445544333333 23332 36888999999999886544 567888899999999999999999
Q ss_pred HHhhCCCCCccHHH
Q 037164 121 MTESNPQMVLDFNL 134 (250)
Q Consensus 121 ~m~~~~g~~~~~~~ 134 (250)
.-... +-.|-...
T Consensus 175 ~Gi~~-~A~P~~rL 187 (223)
T 4aez_C 175 KGKRM-KAKPFLRF 187 (223)
T ss_dssp HHHHH-TCBSHHHH
T ss_pred HHHHc-CCccHHHH
Confidence 98776 77786543
No 287
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.69 E-value=17 Score=24.12 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
..+++.+...+..-.|.++++.+...+...+..|.-.-++.+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 3567777777778889999999987776677777777777777777653
No 288
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.52 E-value=16 Score=24.62 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
-..+++.+...+..-.|.++++.+...+...+..|.-.-++.+...|.+.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34667777777777889999999987777777777777777888777653
No 289
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.35 E-value=41 Score=26.47 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh-cCChhHHHHHHHHHhhCCCCC
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA-ASDIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~-~~~~~~a~~~~~~m~~~~g~~ 129 (250)
-.+.++.=|...|+.++|.+.++++..-...| ..++..+..+.=+ ...-+.+.+++..+... |+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~-~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCA-GHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC-CCC
Confidence 45778888999999999999999875332221 1222222233322 12345677778877765 543
No 290
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=45.04 E-value=60 Score=21.29 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164 201 KGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 201 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
+.+.+++..+....- ...|...|+.++.+.|.-+-|..+-+.+.+
T Consensus 47 eq~~~mL~~W~~r~G--~~ATv~~L~~AL~~i~~~diAe~Ie~~l~~ 91 (122)
T 3ezq_B 47 ERVRESLRIWKNTEK--ENATVAHLVGALRSCQMNLVADLVQEVQQA 91 (122)
T ss_dssp HHHHHHHHHHHHHCT--TTCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555553211 123566666666666666655555554443
No 291
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.88 E-value=68 Score=21.22 Aligned_cols=58 Identities=5% Similarity=0.036 Sum_probs=30.3
Q ss_pred HHHhcCCCCCchhHhhhHHHHHhcC-ChhHHHHHHHHHhhCCCCCccH-HHHHHHHHHHHHHHHHHH
Q 037164 86 EMEEKSINGDQFTLGIRPSAYAAAS-DIHGMDKIINMTESNPQMVLDF-NLLAVLLYMAMTMLKKSE 150 (250)
Q Consensus 86 ~m~~~gi~p~~~ty~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~-~~~~~l~~~a~~~~~~~~ 150 (250)
.++++|+.++..-.. ++..+...+ ..-.|.++++.+++. +-..+. ..| ..++.|.+..
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVY-----R~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVY-----RVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHH-----HHHHHHHHHT
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHH-----HHHHHHHHCC
Confidence 355667665554442 344444455 566777777777655 333333 333 3345555554
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.77 E-value=19 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNW 210 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m 210 (250)
.+|.=|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 293
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=41.82 E-value=27 Score=20.92 Aligned_cols=32 Identities=6% Similarity=-0.235 Sum_probs=18.5
Q ss_pred CCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164 91 SINGDQFTLGIRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 91 gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m 122 (250)
+++|++.||+-+..++-+..-..++..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46667777766666555555445555554444
No 294
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=41.10 E-value=45 Score=20.17 Aligned_cols=31 Identities=6% Similarity=-0.158 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHH-CCCCccHHHHHHHHHHHhh
Q 037164 42 VGKAEMVVQEMKD-MGFARRTIYCYIMMILNYL 73 (250)
Q Consensus 42 ~~~A~~~~~~m~~-~~~~p~~~~y~~li~~~~~ 73 (250)
.++|...|.+|+. .++.|+ .||...|.....
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 4666666666643 455555 556555554443
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.83 E-value=80 Score=21.16 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=19.6
Q ss_pred HHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 86 EMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 86 ~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.+++.|+.++..-. .++..+...+..-.|.++++.++..
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK 50 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 34555655444333 2333344445555666666666544
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.67 E-value=43 Score=22.97 Aligned_cols=67 Identities=6% Similarity=0.078 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC--hhHHHHHHHHHhhCCCCCcc
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD--IHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~--~~~a~~~~~~m~~~~g~~~~ 131 (250)
..+.++.=|...|+.++|.+.++++..-.+. ...++..+..++=+.++ .+.+.+++..+... |+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~-~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCH
Confidence 4567888899999999999999988632221 22334445555555332 45688888888766 55433
No 297
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=40.57 E-value=59 Score=21.67 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=13.0
Q ss_pred chhhHhhhccChhHHHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDN 29 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~ 29 (250)
+.|...++.|+++....+++.
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHHHhCCHHHHHHHHHc
Confidence 345556667777776666653
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.57 E-value=84 Score=21.08 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=21.3
Q ss_pred HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
+.++++|+.++..--. ++..+...+ .-.|.++++.+...
T Consensus 8 ~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~ 46 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKT 46 (145)
T ss_dssp HHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTT
T ss_pred HHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhh
Confidence 3455566665554332 233444444 56677777777655
No 299
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.35 E-value=58 Score=19.12 Aligned_cols=61 Identities=8% Similarity=-0.029 Sum_probs=34.1
Q ss_pred HHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC
Q 037164 50 QEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD 111 (250)
Q Consensus 50 ~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~ 111 (250)
+.|.+.|+..+..- -.++..+...+ ..-.+.++.+.+.+.+...+..|-.-.++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556666665444 33444444443 456677777777666544455555555555555554
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.49 E-value=90 Score=21.08 Aligned_cols=39 Identities=5% Similarity=0.028 Sum_probs=18.5
Q ss_pred HHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 86 EMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 86 ~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.++++|+.++..-. .++..+...+..-.|.++++.++..
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK 55 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 34555655443332 2334444445556666666666443
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=38.48 E-value=1.6e+02 Score=23.85 Aligned_cols=58 Identities=12% Similarity=-0.046 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG-----LPSSLIDAHCKNGLLEKAQSLINHAE 246 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~ 246 (250)
-+...|...|++.+|..++.++...-...|.. ++..-++.|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56788889999999988888887654443432 35566677888888888888877654
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.38 E-value=90 Score=21.07 Aligned_cols=38 Identities=3% Similarity=-0.040 Sum_probs=16.9
Q ss_pred HHhcCCCCCchhHhhhHHHHHhcC-ChhHHHHHHHHHhhC
Q 037164 87 MEEKSINGDQFTLGIRPSAYAAAS-DIHGMDKIINMTESN 125 (250)
Q Consensus 87 m~~~gi~p~~~ty~~li~~~~~~~-~~~~a~~~~~~m~~~ 125 (250)
|++.|+.++..-.. ++..+...+ ..-.|.++++.+...
T Consensus 8 l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~ 46 (150)
T 2w57_A 8 LKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDL 46 (150)
T ss_dssp HHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHT
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 44455554443332 223333333 445555555555443
No 303
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.15 E-value=1.1e+02 Score=25.33 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHCCC---Ccc------------HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch--------h
Q 037164 42 VGKAEMVVQEMKDMGF---ARR------------TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF--------T 98 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~---~p~------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~--------t 98 (250)
+++|-+++.++-..-. .|+ ....|.|...|-+.++++-+..+++.+...+..|+.. +
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 7888888888755421 111 1346889999999999999999999999987755443 4
Q ss_pred HhhhH-HHHHhcCChhHHHHHHHHHh
Q 037164 99 LGIRP-SAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 99 y~~li-~~~~~~~~~~~a~~~~~~m~ 123 (250)
|.-.+ ..+.-.+++.+|.+-+.+..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44443 56677889999998888764
No 304
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.51 E-value=72 Score=21.88 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC
Q 037164 40 FGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING 94 (250)
Q Consensus 40 y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p 94 (250)
|..+....+++.+.+.|+.-|..--...+....+.| -....+-.++.+.||.+
T Consensus 44 ~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 334445555555555555544444444444444433 23445555555555543
No 305
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.33 E-value=1.6e+02 Score=23.51 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC--hhHHHHHHHHHHhcCC
Q 037164 186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL--LEKAQSLINHAETKKG 250 (250)
Q Consensus 186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 250 (250)
..+.+|.=|...|+.++|.+.++++...... ...+..++..++-+.++ .+...+++..+...|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 3578888999999999999999998732222 23334455555554433 4567778877776653
No 306
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=36.13 E-value=89 Score=25.10 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=51.9
Q ss_pred CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 182 VFNKGYMTMMGLLLKLDDV--KGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
.+..+|-.+|..+....++ ++|..+++.+. .|--++..+-..|+..+.+.-..++...+.+-|.+.+
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~-~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIM-TGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 4457899999999888764 88999999988 5666777777777777777777888888888887764
No 307
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.85 E-value=49 Score=18.52 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=13.1
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCC
Q 037164 72 YLTGNREKIDALMLEMEEKSINGD 95 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~gi~p~ 95 (250)
...|+.+.|...+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 445555666665555555555544
No 308
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=35.64 E-value=43 Score=16.50 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164 223 SSLIDAHCKNGLLEKAQSLINHAETKK 249 (250)
Q Consensus 223 ~~li~~~~~~g~~~~a~~~~~~m~~~g 249 (250)
++||.+| ++|..-|+..++.|
T Consensus 12 tALIKay------DKAVaSfk~alk~~ 32 (37)
T 3s6n_M 12 TALIKAY------DKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHH------HHHHHHHHHHHhcC
Confidence 4666666 66677777766654
No 309
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.42 E-value=94 Score=21.28 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=42.7
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH
Q 037164 76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF 132 (250)
Q Consensus 76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 132 (250)
..+.+..+++.+.+.|+.-|...-...+....+.| ....++-.++.+. |+.++.
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~K-GI~~~~ 98 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQK-GISREA 98 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHT-TCCHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHc-CCCHHH
Confidence 55778899999999999977777777888877755 3567788888888 998654
No 310
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=32.75 E-value=1.9e+02 Score=23.26 Aligned_cols=44 Identities=2% Similarity=-0.043 Sum_probs=26.6
Q ss_pred hcCCCCCch-----hHhhhHHHHHhcCC---hhHHHHHHHHHhhCC---CCCccH
Q 037164 89 EKSINGDQF-----TLGIRPSAYAAASD---IHGMDKIINMTESNP---QMVLDF 132 (250)
Q Consensus 89 ~~gi~p~~~-----ty~~li~~~~~~~~---~~~a~~~~~~m~~~~---g~~~~~ 132 (250)
+.|..++.. .-..++...|..|+ .+.|.+.|+.....+ .++||.
T Consensus 185 ~lgw~~~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dl 239 (419)
T 3rjo_A 185 KQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDV 239 (419)
T ss_dssp HCCSSCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGG
T ss_pred HcCCCCCchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCc
Confidence 446665422 22456677778776 557778888776542 266664
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.42 E-value=1.2e+02 Score=25.62 Aligned_cols=60 Identities=15% Similarity=-0.009 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHH-------HHHHHHhcCChhHHHHHHHHHHh
Q 037164 185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS-------LIDAHCKNGLLEKAQSLINHAET 247 (250)
Q Consensus 185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~m~~ 247 (250)
..+|.++..|...+.++.|..+..+.. ++.....-+- +-..+.-.+++.+|.+.+....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788999999999999999999999764 2222222222 33556678899999998887664
No 312
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.36 E-value=3.3e+02 Score=25.48 Aligned_cols=64 Identities=8% Similarity=-0.026 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CC-Cc--hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164 62 IYCYIMMILNYLTGNREKIDALMLEMEEKSI-NG-DQ--FTLGIRPSAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p-~~--~ty~~li~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
.=|.-++..+.+.+.++.+.++-..-.+..- .+ +. ..|..+.+++...|++++|-..+-.+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 3477888899999999999888876554321 11 11 25888999999999999999998877654
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.53 E-value=1.4e+02 Score=20.51 Aligned_cols=38 Identities=0% Similarity=-0.080 Sum_probs=22.2
Q ss_pred HHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164 86 EMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES 124 (250)
Q Consensus 86 ~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~ 124 (250)
.++++|+.++..- ..++..+...+..-.|.++++.+..
T Consensus 23 ~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 23 ILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 3455666654433 3345555566666677777777654
No 314
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=29.44 E-value=54 Score=15.82 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=16.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 037164 191 MGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 191 i~~~~~~g~~~~A~~~~~~m~ 211 (250)
+.-|...|..++|+.+-+.|+
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 566777888888888877776
No 315
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.38 E-value=1.1e+02 Score=19.27 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164 44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTG 75 (250)
Q Consensus 44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g 75 (250)
.|.++-+++...|+.|+..+..-++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35555566666666666666666666655544
No 316
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=29.31 E-value=60 Score=20.10 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA 245 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 245 (250)
.+.+.+++..+.... ....|...|+.++.+.|.-+-|..+-+.+
T Consensus 54 ~eq~~~mL~~W~~~~--g~~At~~~L~~AL~~~~~~~iae~i~~~~ 97 (99)
T 1fad_A 54 SERVRESLKVWKNAE--KKNASVAGLVKALRTCRLNLVADLVEEAQ 97 (99)
T ss_dssp HHHHHHHHHHHHHHH--GGGGSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 355666666665332 12346777777777777766666655443
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.46 E-value=1.8e+02 Score=21.49 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=15.8
Q ss_pred hhhHhhhccChhHHHHHHHHhhhh
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKL 33 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~ 33 (250)
-|+.+--.+++++|..++++....
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455666667777777777766655
No 318
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.45 E-value=92 Score=20.70 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=10.1
Q ss_pred HHHHhcCChhHHHHHHHHHhhC
Q 037164 104 SAYAAASDIHGMDKIINMTESN 125 (250)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~m~~~ 125 (250)
..+...++.-.|.++++.++..
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~ 42 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHK 42 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHh
Confidence 3333444444555555555443
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.20 E-value=1.2e+02 Score=23.71 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCC
Q 037164 42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSIN 93 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~ 93 (250)
+++|...++++....+.| ..+..++..+.-+.. ..+.+.+++..+.+.|+.
T Consensus 27 ~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 27 MKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 777877777775322222 244445554544322 345677777777766443
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.63 E-value=1.2e+02 Score=19.75 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=7.6
Q ss_pred hcCChhHHHHHHHHHhh
Q 037164 108 AASDIHGMDKIINMTES 124 (250)
Q Consensus 108 ~~~~~~~a~~~~~~m~~ 124 (250)
..+..-.|.++++.+++
T Consensus 22 ~~~~~~sa~ei~~~l~~ 38 (131)
T 2o03_A 22 TLDDFRSAQELHDELRR 38 (131)
T ss_dssp HCCSCEEHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHH
Confidence 33344444444444443
No 321
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.89 E-value=36 Score=29.00 Aligned_cols=22 Identities=9% Similarity=-0.245 Sum_probs=10.9
Q ss_pred hhHHHHHhcCChhHHHHHHHHH
Q 037164 101 IRPSAYAAASDIHGMDKIINMT 122 (250)
Q Consensus 101 ~li~~~~~~~~~~~a~~~~~~m 122 (250)
-++..|.+.|-.+.|.++++.+
T Consensus 521 ~vL~iCa~l~L~~~ar~I~k~~ 542 (570)
T 3f3f_C 521 WMLSICVEWRLPEIAKEIYTTL 542 (570)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHH
Confidence 3445555555555555555444
No 322
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.76 E-value=1.1e+02 Score=19.48 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 241 (250)
.+.+..++..+.... ....|...|+.++.+.|+-+-|..+
T Consensus 58 ~eq~~~mL~~W~~~~--g~~AT~~~L~~aL~~i~r~diae~l 97 (111)
T 2yqf_A 58 LEQSVALLNLWVIRE--GQNANMENLYTALQSIDRGEIVNML 97 (111)
T ss_dssp HHHHHHHHHHHHHHH--TTSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhh--CCCchHHHHHHHHHHcCcHHHHHHH
Confidence 355566666655331 1224666666676666666655544
No 323
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.79 E-value=2.2e+02 Score=21.67 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=40.0
Q ss_pred HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164 69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE 123 (250)
Q Consensus 69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~ 123 (250)
....+.|++++++.-...-.+. -+-|...=..|+.-+|-.|++++|.+=++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4466788999988888765554 22244445567899999999999999888774
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.62 E-value=1.2e+02 Score=18.67 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChh
Q 037164 200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE 236 (250)
Q Consensus 200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 236 (250)
.++|.+++..+..+| ...|..++.++...|+..
T Consensus 53 ~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 53 RDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 444444444444322 234444444444444433
No 325
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.35 E-value=1.2e+02 Score=23.59 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHC-C----CCccHHHHHHH---HHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh
Q 037164 42 VGKAEMVVQEMKDM-G----FARRTIYCYIM---MILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH 113 (250)
Q Consensus 42 ~~~A~~~~~~m~~~-~----~~p~~~~y~~l---i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~ 113 (250)
-++|..+|..+.+. + +.|+....... +..+.+.-+ -++++.+.+.|+.|..+++.=++..|++.=.++
T Consensus 165 E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~ 240 (331)
T 3qye_A 165 EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLG 240 (331)
T ss_dssp HHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHH
Confidence 57889999887653 1 34443322222 222222222 367778888999999888888999999888899
Q ss_pred HHHHHHHHHhhCCCCC
Q 037164 114 GMDKIINMTESNPQMV 129 (250)
Q Consensus 114 ~a~~~~~~m~~~~g~~ 129 (250)
.+.++++.+... |..
T Consensus 241 ~~lrlwD~~l~~-g~~ 255 (331)
T 3qye_A 241 FVARVFDMIFLQ-GTE 255 (331)
T ss_dssp HHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHC-CcH
Confidence 999999988776 655
No 326
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=25.29 E-value=1.3e+02 Score=18.73 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=21.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
.|...+...+..+...+++++|..+++-+.
T Consensus 31 ~DV~~l~~yL~~lv~~~~lek~~~vlk~l~ 60 (97)
T 4fjo_A 31 EDILQVVRYCTDLIEEKDLEKLDLVIKYMK 60 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 344556666677777888888888887775
No 327
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=25.11 E-value=1.1e+02 Score=18.00 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEKSIN 93 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~ 93 (250)
.+++.--.+.| +..|-+++++|++.|+.
T Consensus 27 ~S~lQR~lrIG-YnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 27 ISAVQRKLKIG-YNRAARMIEAMEMAGVV 54 (73)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHccC-hHHHHHHHHHHHHCCcC
Confidence 45666666777 78999999999999875
No 328
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.76 E-value=1.2e+02 Score=23.61 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHhc-----CCCCCchhHhhh---HHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHH
Q 037164 65 YIMMILNYLTGNREKIDALMLEMEEK-----SINGDQFTLGIR---PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLA 136 (250)
Q Consensus 65 ~~li~~~~~~g~~~~a~~~~~~m~~~-----gi~p~~~ty~~l---i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 136 (250)
|.+...+.-.-+-+.|..+|..+... -+.|+....... +....+..+ -++++-+... |+.|..+++.
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~-~i~~~~~~~~ 227 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEH-EIGPSLYAAP 227 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHT-TCCGGGTSHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHc-CCChHHHHHH
Confidence 34443333333567788888876543 234444322221 222222222 2455566666 8888766555
Q ss_pred HH---------HHHHHHHHHHHHhhhhccCCchhhhc----------chhHHHHHHHHHhccCC-CChhhHHHHHHHHHh
Q 037164 137 VL---------LYMAMTMLKKSEGLIATKRNSSNAFE----------LKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLK 196 (250)
Q Consensus 137 ~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 196 (250)
-+ .+.+..+++........--... +.. ...+.+.+.+.++...+ .+......+|+--..
T Consensus 228 W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~v-alaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~ 306 (331)
T 3qye_A 228 WFLTMFASQFPLGFVARVFDMIFLQGTEVIFKV-ALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFE 306 (331)
T ss_dssp HHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHH-HHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Confidence 55 6666666666652211000000 111 33456677777766433 334445555543333
Q ss_pred cC
Q 037164 197 LD 198 (250)
Q Consensus 197 ~g 198 (250)
..
T Consensus 307 l~ 308 (331)
T 3qye_A 307 MD 308 (331)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 329
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.42 E-value=1e+02 Score=17.21 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=17.9
Q ss_pred HhhcCChhhHHHHHHHHHhc-CCCCCc
Q 037164 71 NYLTGNREKIDALMLEMEEK-SINGDQ 96 (250)
Q Consensus 71 ~~~~g~~~~a~~~~~~m~~~-gi~p~~ 96 (250)
--...|++.|...|.+++.. .|+|+.
T Consensus 30 ~~~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 30 QDNNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34567888888888888764 455544
No 330
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=24.36 E-value=1.3e+02 Score=23.04 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 037164 82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV 129 (250)
Q Consensus 82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~ 129 (250)
++++.+.+.|+.|...++.=++..|++.=.++.+.++++.+... |..
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~-g~~ 221 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCE-GLN 221 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CcH
Confidence 46667778899999999998999999988899999999998776 643
No 331
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=24.36 E-value=1.5e+02 Score=19.25 Aligned_cols=34 Identities=21% Similarity=-0.025 Sum_probs=21.4
Q ss_pred CCCcchHHHHHHHHhcC---ChhHHHHHHHHHHhcCC
Q 037164 217 YDFGLPSSLIDAHCKNG---LLEKAQSLINHAETKKG 250 (250)
Q Consensus 217 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~ 250 (250)
|+..+=.-+++=+.+++ .-++|..+.+.|++.|+
T Consensus 35 ~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 35 KKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp SSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred cceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 45555566666666654 34677777777777664
No 332
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.21 E-value=1.8e+02 Score=19.97 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc
Q 037164 78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~ 131 (250)
+.+..+++.+.+.|+.-|...-...+....+.| ..-.++-.++.+. |+..+
T Consensus 49 e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~K-GI~~~ 99 (162)
T 3dfg_A 49 EAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTH-GLDSD 99 (162)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHT-TCCHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHc-CCCHH
Confidence 456677777777777766655555566555432 3445666677776 77644
No 333
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=23.29 E-value=52 Score=27.45 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=22.3
Q ss_pred cChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHH
Q 037164 18 HGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTI 62 (250)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~ 62 (250)
.++++|....++..+. ..+.+-. +-.|.++|.++.+.|+.||..
T Consensus 212 ~~ldeal~~~~~a~~~-~~~~SIg~~GNaadv~~~l~~~~i~~Dlv 256 (551)
T 1x87_A 212 DSLDAALEMAKQAKEE-KKALSIGLVGNAAEVLPRLVETGFVPDVL 256 (551)
T ss_dssp SCHHHHHHHHHHHHHT-TCCEEEEEESCHHHHHHHHHHTTCCCSEE
T ss_pred CCHHHHHHHHHHHHHc-CCceEEEEeccHHHHHHHHHHCCCCCCCC
Confidence 4555555555554433 1122222 555566666666666666543
No 334
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=23.03 E-value=1.2e+02 Score=20.00 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=23.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164 182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212 (250)
Q Consensus 182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 212 (250)
.|...+...+..+...+++++|..+++-+..
T Consensus 58 ~DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 58 EDILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 4455666667777788899999988887763
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.56 E-value=2e+02 Score=20.11 Aligned_cols=106 Identities=8% Similarity=-0.092 Sum_probs=57.7
Q ss_pred chhhHhhhccChhHHHHHHHHhhhh--hccccccc------hhHHHHHHHHHHHCCCCccH---HHHHHHHHHHhhcCCh
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG------VGKAEMVVQEMKDMGFARRT---IYCYIMMILNYLTGNR 77 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~------~~~A~~~~~~m~~~~~~p~~---~~y~~li~~~~~~g~~ 77 (250)
+.|...++.|+++....+++.-+.. .++...++ ...-.++++.+.+.|..++. ..++.|.. .++.|+.
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~ 86 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI-AASAGXD 86 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH-HHHHTCH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHH-HHHcCHH
Confidence 5577788899999999888875443 12222222 22234566677777755443 23344433 3445655
Q ss_pred hhHHHHHHHHHhcCCCCCchh--HhhhHHHHHhcCChhHHHHHH
Q 037164 78 EKIDALMLEMEEKSINGDQFT--LGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 78 ~~a~~~~~~m~~~gi~p~~~t--y~~li~~~~~~~~~~~a~~~~ 119 (250)
+ +++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 87 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 87 E----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4 3344445666554432 234455556667766554444
No 336
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.38 E-value=2.8e+02 Score=22.01 Aligned_cols=63 Identities=10% Similarity=0.041 Sum_probs=39.1
Q ss_pred chhhHhhhccChhHHHHHHHHhhhhh--ccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 037164 9 SRLNLIFEVHGVEQAEIYFDNISKLL--RQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILN 71 (250)
Q Consensus 9 ~~l~~~~k~~~~~~a~~~f~~~~~~~--~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~ 71 (250)
++|.=|...|++++|.+.++++.... .....+. .+.+-.++..+...++-+.......+...+
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 67888889999999999999986420 0011111 566777777777766544434443333333
No 337
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.03 E-value=65 Score=23.24 Aligned_cols=45 Identities=11% Similarity=-0.107 Sum_probs=29.4
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC
Q 037164 189 TMMGLLL---KLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG 233 (250)
Q Consensus 189 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 233 (250)
-+|+++- +..+.+.|.-.+.+|...|..|....--.++-+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3556664 45789999999999998887774333333333443333
No 338
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=21.87 E-value=53 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHCCCCccH
Q 037164 42 VGKAEMVVQEMKDMGFARRT 61 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~ 61 (250)
+-.|.++|+++.+.|+.||.
T Consensus 237 ~GNaadv~~~l~~~~i~~Dl 256 (552)
T 2fkn_A 237 LGNAAEVHHTLLNRGVKIDI 256 (552)
T ss_dssp ESCHHHHHHHHHTTTCCCSE
T ss_pred eccHHHHHHHHHHCCCCCCC
Confidence 44455555555555555544
No 339
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.65 E-value=2e+02 Score=19.78 Aligned_cols=27 Identities=4% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEE 89 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 89 (250)
....+|.=|...|+.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 346677778888888888888887663
No 340
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.20 E-value=62 Score=24.29 Aligned_cols=39 Identities=5% Similarity=-0.037 Sum_probs=30.5
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC
Q 037164 72 YLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS 110 (250)
Q Consensus 72 ~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~ 110 (250)
...|+.+.+.+++++....|..|....-..++.+.-+.|
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG 85 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVI 85 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456889999999999998888887777777777665544
No 341
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.17 E-value=89 Score=22.27 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWT 211 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~ 211 (250)
.+|.|+...|++++|.+++.++.
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677777777777777776654
No 342
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=21.05 E-value=52 Score=18.32 Aligned_cols=13 Identities=15% Similarity=-0.222 Sum_probs=6.5
Q ss_pred cCChhhHHHHHHH
Q 037164 74 TGNREKIDALMLE 86 (250)
Q Consensus 74 ~g~~~~a~~~~~~ 86 (250)
..|++.|...|.+
T Consensus 32 ~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 32 NWNYEVAIKGFQS 44 (57)
T ss_dssp TTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3444555555554
No 343
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.63 E-value=2.1e+02 Score=19.96 Aligned_cols=105 Identities=9% Similarity=-0.121 Sum_probs=50.3
Q ss_pred hhhHhhhccChhHHHHHHHHhhhhh--ccccccc------hhHHHHHHHHHHHCCCCccH------HHHHHHHHHHhhcC
Q 037164 10 RLNLIFEVHGVEQAEIYFDNISKLL--RQCLFFG------VGKAEMVVQEMKDMGFARRT------IYCYIMMILNYLTG 75 (250)
Q Consensus 10 ~l~~~~k~~~~~~a~~~f~~~~~~~--~~~~~y~------~~~A~~~~~~m~~~~~~p~~------~~y~~li~~~~~~g 75 (250)
.|+..++.|+++....+++.-+... .+..-.+ ...-.++++.+.+.|-.++. ..++.|..+ +..|
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A-~~~~ 83 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA-CSVG 83 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH-HHHC
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH-HHcC
Confidence 4566778888888888887654431 1222222 22234566666666633322 223344333 3445
Q ss_pred ChhhHHHHHHHHHhcC--CCCCch--hHhhhHHHHHhcCChhHHHHHH
Q 037164 76 NREKIDALMLEMEEKS--INGDQF--TLGIRPSAYAAASDIHGMDKII 119 (250)
Q Consensus 76 ~~~~a~~~~~~m~~~g--i~p~~~--ty~~li~~~~~~~~~~~a~~~~ 119 (250)
+.+ +++.+.+.| ..++.. .-.+.+...+..|+.+-+.-++
T Consensus 84 ~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 127 (228)
T 2dzn_A 84 NLE----VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127 (228)
T ss_dssp CHH----HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CHH----HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHH
Confidence 544 333444455 222221 1223444555566655444443
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.60 E-value=2.6e+02 Score=20.57 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164 189 TMMGLLLKLDDVKGAEKTLRNWTSK 213 (250)
Q Consensus 189 ~li~~~~~~g~~~~A~~~~~~m~~~ 213 (250)
..+-.|.+.|.+++|.+++++..++
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3445788999999999999997643
No 345
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.50 E-value=1.2e+02 Score=24.17 Aligned_cols=67 Identities=6% Similarity=0.069 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC--hhHHHHHHHHHhhCCCCCcc
Q 037164 63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD--IHGMDKIINMTESNPQMVLD 131 (250)
Q Consensus 63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~--~~~a~~~~~~m~~~~g~~~~ 131 (250)
..+.++.=|...|+.++|.+.++++..-.+.+ ..++..+..+.=+.++ .+.+.+++..+... |+-+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCH
Confidence 35788888888999999999998886432222 2334445555554433 45678888888776 65443
No 346
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.34 E-value=98 Score=22.05 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=4.1
Q ss_pred chhHHHHHHH
Q 037164 165 LKDQLYRIWK 174 (250)
Q Consensus 165 ~~~~~~~~~~ 174 (250)
..+..+++.+
T Consensus 44 ql~~ydea~~ 53 (192)
T 1ixm_A 44 SLQKYDRVFE 53 (192)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 3444444443
No 347
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=20.32 E-value=52 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHCCCCccH
Q 037164 42 VGKAEMVVQEMKDMGFARRT 61 (250)
Q Consensus 42 ~~~A~~~~~~m~~~~~~p~~ 61 (250)
+-.|.++|+++.+.|+.||.
T Consensus 241 ~GNaadv~~~l~~~~i~~Dl 260 (557)
T 1uwk_A 241 HGNAAEILPELVKRGVRPDM 260 (557)
T ss_dssp ESCHHHHHHHHHHHTCCCSE
T ss_pred eccHHHHHHHHHHCCCCCCC
Confidence 44444555555555555544
Done!