BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037165
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
           Vulgatus
          Length = 801

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 135 FNNGVNFAVAASTALDDWFFAARNIPVKWANNNAPLKVQLNWFKTYLNSSV 185
           F NG ++      A   W+     IP KW N     KVQ+ +   YLNS V
Sbjct: 52  FENGTDWQSGFLPAGISWYRKTFTIPSKWKNK----KVQILFEGVYLNSEV 98


>pdb|2Z04|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
           Carboxylase Atpase Subunit From Aquifex Aeolicus
 pdb|2Z04|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
           Carboxylase Atpase Subunit From Aquifex Aeolicus
          Length = 365

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 21/115 (18%)

Query: 9   HFLVSRQQSTQPNILSSLRINLTIKPSKLKH-------VPALFNINITLSTIIKMSSVFL 61
            FLV ++     + L S ++ + IK  KL +       +  L + N  +    K  S F+
Sbjct: 109 EFLVIKRDEI-IDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEES-FI 166

Query: 62  LPRALSFGDSISDTGNQIRDHPVLYYAARLPYGQTYFHDKPTGRWSDGLLMIDYI 116
           +   + F   IS  G  +RD            G+TYF+ +P  +  +G+L+ +Y+
Sbjct: 167 IEEFVKFEAEISCIG--VRDRE----------GKTYFYPQPFNKHEEGILIYNYV 209


>pdb|3VX7|B Chain B, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd-Atg10
           Complex
          Length = 152

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 23  LSSLRINLTIKPSKLKHVPALFNINITLSTIIKMSSVF 60
           +SSLR+ LT+  S+L+ +  L   ++TLST ++M SV+
Sbjct: 79  ISSLRL-LTLSDSELRSILNLGTFSVTLSTDMEMKSVY 115


>pdb|2LPU|A Chain A, Solution Structures Of Kmatg10
          Length = 152

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 23  LSSLRINLTIKPSKLKHVPALFNINITLSTIIKMSSVF 60
           +SSLR+ LT+  S+L+ +  L   ++TLST ++M SV+
Sbjct: 79  ISSLRL-LTLSDSELRSILNLGTFSVTLSTDMEMKSVY 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,431,342
Number of Sequences: 62578
Number of extensions: 469323
Number of successful extensions: 970
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 4
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)