BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037166
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 9 SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIG 68
S +LPL G+ A+KD V+G T + + A A + + GA +G
Sbjct: 56 SLKERELPLFGIPIAVKDNILVEGEKTTCASK--ILENFVAPYDATVIERLKKAGALIVG 113
Query: 69 KTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 128
KT +DE A + E + NPW +RVP SLG+DTGGS+R
Sbjct: 114 KTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIR 173
Query: 129 VPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWF 164
PAS+CG+ G +P++G VS G++ A S D +G F
Sbjct: 174 QPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVF 209
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
Query: 2 EKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS 61
E+ + + + LPL+GL A+KD G T G+ +TA A L L
Sbjct: 43 ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKAL- 101
Query: 62 GGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGT 121
GA +GKT +DE + E+ + NP+ PDRVP L +LG+
Sbjct: 102 -GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGS 160
Query: 122 DTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
DTGGSVR PA++CG++G +P++G VS G+I A S D +G A
Sbjct: 161 DTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMA 204
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGN-------PDWARTHSAATSTAPAVLAVLSGGATSIG 68
PL GL +KD+F V G T G P+ AR AV + GA
Sbjct: 64 PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPEEAR----------AVRRLREAGALLFA 113
Query: 69 KTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 128
KT E+A I GEN G N P R + SLGTDTGGS+R
Sbjct: 114 KTNXHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIR 173
Query: 129 VPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
+PA + G+ GF+PS+G VS G +P+++S D G
Sbjct: 174 IPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAG 207
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 9 SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIG 68
+S A PL G+ FA+KD DV G P + A V + + GA +G
Sbjct: 87 ASPATGKPLYGVPFAVKDNIDVAGLPCSAACPAFTYEPD---RDATVVARLRAAGAIVLG 143
Query: 69 KTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 128
KT +D+ A + G +G P + D + LV FSLGTDT GS R
Sbjct: 144 KTNLDQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGR 203
Query: 129 VPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
VPA++ + G +P+ G +ST+GV+P +S D V FA
Sbjct: 204 VPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFA 240
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%)
Query: 53 APAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXX 112
A V + G +GK +DE A + E + NPW +RVP
Sbjct: 92 ATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSA 151
Query: 113 KLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
+V +LG+DTGGSVR PAS CG+ G++P++G VS G++ A S D +G
Sbjct: 152 GMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIG 201
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%)
Query: 64 ATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDT 123
A IGK MDE A + E ++ NP+ VP LV SLG+DT
Sbjct: 116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT 175
Query: 124 GGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPK 169
GGS+R PA+YCG+ G +P++G VS G++ A S D +G + K
Sbjct: 176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%)
Query: 53 APAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXX 112
A V G +GK +DE A + E + NPW +RVP
Sbjct: 93 ATVVKKXKEAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSA 152
Query: 113 KLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
V +LG+DTGGSVR PAS CG+ G++P++G VS G++ A S D +G
Sbjct: 153 GXVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIG 202
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 17 LSGLTFAIKDIFDVDGHVTGFGNP--DWARTHSAATST--APAVLAVLSGGATSIGKTIM 72
L+G AIKD +VT G P + +RT T + A V +L+ GAT GK +
Sbjct: 88 LTGRRVAIKD------NVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVC 141
Query: 73 DEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPAS 132
+++ +S + G NPW R VDF++G D GGS+R+PA+
Sbjct: 142 EDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAA 201
Query: 133 YCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
+CG+ G +P+ G V G P+ ++ D +G
Sbjct: 202 FCGVVGHKPTFGLVPYTGAFPIERTIDHLG 231
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 17 LSGLTFAIKDIFDVDGHVTGFGNP--DWARTHSAATST--APAVLAVLSGGATSIGKTIM 72
L+G AIKD +VT G P + +RT T + A V +L+ GAT GK +
Sbjct: 88 LTGRRVAIKD------NVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVC 141
Query: 73 DEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPAS 132
+++ +S + G NPW R VDF++G D GG++R+PA+
Sbjct: 142 EDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAA 201
Query: 133 YCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
+CG+ G +P+ G V G P+ ++ D +G
Sbjct: 202 FCGVVGHKPTFGLVPYTGAFPIERTIDHLG 231
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGG V PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ IKDI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LG TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 1 MEKFVLQPSSSAHQL--PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA 58
+ FV S+ Q PL G+ I DI D T G+ + S AP V+
Sbjct: 36 VHAFVRHDKSARAQASGPLRGIAVGIADIIDTANMPTEMGSEIYRGWQP--RSDAPVVMM 93
Query: 59 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFS 118
+ GAT IGKT A ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 119 LGTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNR 173
LGT TGGSV PA+YCG +PS + T GV + + DTVG F + L R
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 72/182 (39%), Gaps = 5/182 (2%)
Query: 16 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 74
P +G+ + +KD+ V G + + A A V + + G +GKT E
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 75 MAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYC 134
M + E + +G NPW R L + G D GSVR+PAS C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVC 182
Query: 135 GIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLPDDASLVRPSQVI 194
G+ G +P+ G +S P+ D V A + + R R + L D S RP
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHE-GLFARSVRDIAALLDVVSGHRPGDTF 238
Query: 195 FA 196
A
Sbjct: 239 CA 240
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 8/155 (5%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ +KD + T G+ A V + GA +GKT + E
Sbjct: 77 PLHGIPLLLKDNINAAPMATSAGS---LALQGFRPDDAYLVRRLRDAGAVVLGKTNLSEW 133
Query: 76 AY-----SINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVP 130
A SI+G + G NP+ P L ++GT+T GS+ P
Sbjct: 134 ANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCP 193
Query: 131 ASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
A+ G+ G +P+ G VS G+IP++ S DT G A
Sbjct: 194 AAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMA 228
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 5/182 (2%)
Query: 16 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 74
P +G+ + +KD+ V G + + A A V + + G +GKT E
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 75 MAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVRVPASYC 134
M + E + +G NPW R L + G D G+VR+PAS C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 135 GIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLPDDASLVRPSQVI 194
G+ G +P+ G +S P+ D V A + + R R + L D S RP
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHE-GLFARSVRDIAALLDVVSGHRPGDTF 238
Query: 195 FA 196
A
Sbjct: 239 CA 240
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 94 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 150
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + +S + N +G NPW + P LGTD GG
Sbjct: 151 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 210
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 211 SIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 132 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 188
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + +S + N +G NPW + P LGTD GG
Sbjct: 189 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 248
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 249 SIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 118 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 174
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + +S + N +G NPW + P LGTD GG
Sbjct: 175 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 234
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 235 SIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 95 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 151
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + S + N +G NPW + P LGTD GG
Sbjct: 152 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 211
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 212 SIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 88 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 144
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + S + N +G NPW + P LGTD GG
Sbjct: 145 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 204
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 205 SIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 114 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 170
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + S + N +G NPW + P LGTD GG
Sbjct: 171 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 230
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 231 SIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 7 QPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLS-GGAT 65
Q S + Q L G+ ++K+ F GH + G + + + V+ VL GA
Sbjct: 132 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLG---LSLNEGMPSESDCVVVQVLKLQGAV 188
Query: 66 SIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGG 125
T + + S + N +G NPW + P LGTD GG
Sbjct: 189 PFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 248
Query: 126 SVRVPASYCGIFGFRPSHGAVSTAGV 151
S+R P+++CGI G +P+ +S +G+
Sbjct: 249 SIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|3CFU|A Chain A, Crystal Structure Of The Yjha Protein From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr562
pdb|3CFU|B Chain B, Crystal Structure Of The Yjha Protein From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr562
Length = 159
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 59 VLSGGATSIGKTIMDEMAYSI-NGENKHYGTPTNPWAPD 96
+L GG GK + ++Y I GE KHY NP+ D
Sbjct: 92 ILXGGTLVSGKKVTGVLSYVIPKGEQKHYTLVYNPFLAD 130
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 42 WARTHSAATSTAPAVL----AVLSGGATSIGKTIMDEM 75
WA+ S AP +L A+++GGAT IGK I+ E+
Sbjct: 4 WAKGRS---YLAPGLLQGQVAIVTGGATGIGKAIVKEL 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,102,235
Number of Sequences: 62578
Number of extensions: 269127
Number of successful extensions: 763
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 34
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)