RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037166
(239 letters)
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 420 bits (1081), Expect = e-148
Identities = 191/223 (85%), Positives = 202/223 (90%), Gaps = 1/223 (0%)
Query: 1 MEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVL 60
MEKFVL P+SS+H LPL GLTFA+KDIFDV+G+VTGFGNPDWARTHSAATSTAPAVLAVL
Sbjct: 11 MEKFVLSPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVL 70
Query: 61 SGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLG 120
GGAT +GKTIMDEMAYSINGEN HYGTPTNP APDRVPGGSSSGSAVAVGAKLVDFSLG
Sbjct: 71 RGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLG 130
Query: 121 TDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQ 180
TDTGGSVRVPASYCGIFGFRPSHGAVST GVIPMAQSFDTVGWFA DP IL RVG VLLQ
Sbjct: 131 TDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVILKRVGHVLLQ 190
Query: 181 LPDDASLVRPSQVIFAEDCLQLSSIPSDRITQGLVKSVEKLFG 223
P D + ++PSQ+I AEDC QLSSIP DR+ Q LVKSVEKLFG
Sbjct: 191 QP-DVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFG 232
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 289 bits (743), Expect = 1e-97
Identities = 112/212 (52%), Positives = 139/212 (65%), Gaps = 1/212 (0%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL+GL FA+KD+FDV G+VTG GNPDW AT TAPAV +L+ GA +GKT DE+
Sbjct: 25 PLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDEL 84
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A+S+NG+N HYGTP NP APDRVPGGSSSGSA AV L DF+LGTDTGGSVR PAS+CG
Sbjct: 85 AFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCG 144
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLPDDASLVRPSQVIF 195
++G RP+HG +S GV+P+A SFDTVGWFA D +L RVG VLL D +++
Sbjct: 145 LYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGEVLLG-DDAQEFPLTQRLLI 203
Query: 196 AEDCLQLSSIPSDRITQGLVKSVEKLFGDCRE 227
D L + + + G +
Sbjct: 204 PVDLFALLDPAVRAALEAALARLRPHLGPAKP 235
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 211 bits (540), Expect = 3e-66
Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL+G+ A+KD D G T G+ A A V + + GA +GKT MDE
Sbjct: 73 PLAGVPIAVKDNIDTAGLPTTAGSK--ALEDYVPPYDATVVERLRAAGAVILGKTNMDEF 130
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A + EN +G NPW +RVPGGSS GSA AV A LV +LG+DTGGS+R+PA++CG
Sbjct: 131 AMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCG 190
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
+ G +P++G VS GV+P+A S D +G A
Sbjct: 191 LVGLKPTYGRVSRYGVVPLASSLDQIGPLA 220
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 182 bits (463), Expect = 3e-55
Identities = 66/150 (44%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ ++KD DV G T G+ +T L + GA +GKT MDE
Sbjct: 46 PLHGVPISLKDNIDVKGVPTTAGSKALEGYPPPYDATVVERL--RAAGAVILGKTNMDEF 103
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A EN +G NPW R PGGSS GSA AV A LV ++GTDTGGS+R+PA++CG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
+ G +P++G VS GV+P + S D VG A
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLA 193
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 163 bits (416), Expect = 5e-48
Identities = 74/150 (49%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL+G+ FA+K++FDV G T G+ R AT A AV + + GA +G MDE
Sbjct: 71 PLAGVPFAVKNLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVLVGALNMDEY 129
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
AY EN HYG NP R+ GGSS GSA AV A LV F+LG+DT GS+RVPAS CG
Sbjct: 130 AYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCG 189
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
IFG +P++G +S AG P S D +G FA
Sbjct: 190 IFGLKPTYGRLSRAGSFPFVASLDHIGPFA 219
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 162 bits (413), Expect = 2e-47
Identities = 68/159 (42%), Positives = 86/159 (54%), Gaps = 20/159 (12%)
Query: 16 PLSGLTFAIKDIFDVDGHVT--------GFGNP-DWARTHSAATSTAPAVLAVLSGGATS 66
PL+G+ AIKD G T + P D AT A GA
Sbjct: 55 PLAGIPIAIKDNICTKGIRTTCASKILENYVPPYD-------ATVVEKLKAA----GAVI 103
Query: 67 IGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGS 126
+GKT MDE A + EN +G NPW +RVPGGSS GSA AV A L +LG+DTGGS
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163
Query: 127 VRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
+R PA++CG+ G +P++G VS G+I A S D +G FA
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFA 202
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 155 bits (395), Expect = 7e-45
Identities = 67/151 (44%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 15 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 74
L L+G+ IKD + G T G P AT AP V +L GA +GK M E
Sbjct: 72 LLLAGVPIVIKDNINTAGMPTTAGTPALLG-FVPATD-APVVQRLLDAGAVPLGKANMHE 129
Query: 75 MAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYC 134
+A+ I N +G NP+ P R+ GGSS G+A AV A+L LGTDTGGSVR+PA+ C
Sbjct: 130 LAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALC 189
Query: 135 GIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
G+ G RP+ G S GV+P++ + DTVG A
Sbjct: 190 GVVGLRPTVGRYSGDGVVPISHTRDTVGPIA 220
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 154 bits (392), Expect = 1e-44
Identities = 70/152 (46%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Query: 15 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVL-SGGATSIGKTIMD 73
PL+G+ A+KD G VT + +T V+ L GA IGKT MD
Sbjct: 54 TPLAGIPIAVKDNISTKGIVTTCASKILENYIPPYDAT---VIERLKQAGALIIGKTNMD 110
Query: 74 EMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASY 133
E A + E +G NPW DRVPGGSS GSA AV A L FSLG+DTGGS+R PAS+
Sbjct: 111 EFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASF 170
Query: 134 CGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
CG+ GF+P++G VS G++ A S D +G FA
Sbjct: 171 CGVVGFKPTYGRVSRYGLVAYASSLDQIGPFA 202
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 155 bits (395), Expect = 4e-44
Identities = 76/184 (41%), Positives = 98/184 (53%), Gaps = 5/184 (2%)
Query: 15 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 74
LPL G+ FA+KD DV G T P +A T A V + + GA IGKT +D+
Sbjct: 67 LPLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PERDATVVARLRAAGAIVIGKTNLDQ 123
Query: 75 MAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYC 134
A + G YG N + P+ V GGSSSGSAVAV LV F+LGTDT GS RVPA++
Sbjct: 124 FATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFN 183
Query: 135 GIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQL-PDDA-SLVRPSQ 192
I G +P+ G +ST GV+P ++ D V FA + V V+ P D S P+
Sbjct: 184 NIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPAD 243
Query: 193 VIFA 196
A
Sbjct: 244 APAA 247
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 152 bits (387), Expect = 8e-44
Identities = 69/153 (45%), Positives = 97/153 (63%), Gaps = 7/153 (4%)
Query: 15 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSA-ATSTAPAVLAVLSGGATSIGKTIMD 73
PL+G+ ++KD+FDV G VT G+ + A + APAV + GA IG+T M
Sbjct: 70 SPLAGIPVSVKDLFDVAGQVTRAGSR--VLADAPPAAADAPAVARLRRAGAVLIGRTNMT 127
Query: 74 EMAYSINGENKHYGTPTNPWAPD----RVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRV 129
E A+S G N HYGTP NPW D R+PGGSSSG+AV+V + +LGTDTGGS+R+
Sbjct: 128 EFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGSIRI 187
Query: 130 PASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
PA+ CG+ GF+P+ V G +P++ + D++G
Sbjct: 188 PAALCGLTGFKPTARRVPLQGAVPLSTTLDSIG 220
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 154 bits (390), Expect = 1e-43
Identities = 73/180 (40%), Positives = 93/180 (51%), Gaps = 3/180 (1%)
Query: 14 QLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMD 73
+LPL G+ FA+KD DV G T P +A T A V + + GA +GKT +D
Sbjct: 29 RLPLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PEEDATVVALLRAAGAIVVGKTNLD 85
Query: 74 EMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASY 133
+ A + G YG N + P + GGSSSGSAVAV LV F+LGTDT GS RVPA+
Sbjct: 86 QFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAAL 145
Query: 134 CGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLPDDASLVRPSQV 193
I G +P+ G VST GV+P +S D V FA +V R+ RP
Sbjct: 146 NNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPA 205
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 150 bits (382), Expect = 3e-43
Identities = 73/149 (48%), Positives = 96/149 (64%), Gaps = 3/149 (2%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
L G+ A KD+FDV G VT G+ A + A+ A V + G SIG+T M E
Sbjct: 69 LLDGIPIAWKDLFDVAGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEF 127
Query: 76 AYSINGENKHYGTPTNPWAPD--RVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASY 133
A+S G N HYGTP NP + D R+PGGSSSGSAVAV A LV ++GTDTGGSVR+PA++
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187
Query: 134 CGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
G+ G++ + G S GV P+A+S D++G
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLG 216
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 150 bits (381), Expect = 5e-43
Identities = 78/169 (46%), Positives = 97/169 (57%), Gaps = 2/169 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL+G+ FA+K++FDV G T G R + A A V + + GA +G MDE
Sbjct: 64 PLAGVPFAVKNLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEF 122
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
AY EN HYG NP R+ GGSS GSA AV A LV FSLG+DT GS+RVPAS CG
Sbjct: 123 AYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCG 182
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLPDD 184
+FG +P++G +S GV P S D VG FA + L V +Q PD
Sbjct: 183 VFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDV-MQGPDP 230
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 131 bits (332), Expect = 4e-36
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G +IKD+FDV G T G+ R A + A V + + GA IGKT M E
Sbjct: 45 PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A++ G N HYG P N P R+PGGSSSG+AV+V + ++G+DTGGSVR+PA+ G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVG 162
+ GF+P+ + G P++ S D++G
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIG 190
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 117 bits (296), Expect = 8e-31
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 35/198 (17%)
Query: 16 PLSGLTFAIKDIF-DVDGHVTG-------FGNPDWARTHSAATSTAPAVLAVLSGGATSI 67
PL+ F IKD F +G F + AT V +++ GA +
Sbjct: 36 PLANCVFTIKDNFATSEGPTHASSKSLENF------KPSYNAT----VVQKLINAGAKPV 85
Query: 68 GKTIMDEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 127
K DE+ G +G NP ++ GGSSSGSA A K + F++G+DTG SV
Sbjct: 86 AKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-ATFNKNISFAIGSDTGDSV 144
Query: 128 RVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLPDDASL 187
R+PAS+ G GF+PS+GA+S G+ A S DTV +F + V +DA +
Sbjct: 145 RLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFT------HNV--------NDAII 190
Query: 188 VRPSQVIFAEDCLQLSSI 205
+ S+V+F +D L+S+
Sbjct: 191 L--SKVLFGKDENDLTSV 206
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 117 bits (296), Expect = 9e-31
Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ +K+ F+V G T +G PD A AV + + GA +GKT +
Sbjct: 75 PLLGIPVTVKESFNVAGLPTTWGFPDLR--DYVPAEDAVAVARLKAAGAVILGKTNVPLG 132
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
N+ YGT NPW R PGGSS GSA A+ A S+G+D GGS+RVPA YCG
Sbjct: 133 LQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCG 192
Query: 136 IFGFRPSHGAVSTAGVIP 153
++ +P+ G V G IP
Sbjct: 193 VYAHKPTLGLVPLRGHIP 210
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 114 bits (287), Expect = 1e-29
Identities = 61/137 (44%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 13 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIM 72
+LPL G+ AIKD DV G VT +G+ A AATS A V + + GA IGKT +
Sbjct: 69 ERLPLLGVPIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNV 125
Query: 73 DEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 132
E+ E+ +G NPW P+R PGGSS GSA AV A L +LG+D GGS+R+P++
Sbjct: 126 PELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPST 185
Query: 133 YCGIFGFRPSHGAVSTA 149
+CG+FG +P +S
Sbjct: 186 WCGLFGLKPQRDRISLE 202
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 107 bits (269), Expect = 5e-27
Identities = 59/156 (37%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAA---TSTAPAVLAVLSGGATSIGKTIM 72
L G+ +IKDIF G T G +R A APAV + GA +GKT
Sbjct: 71 LLDGVPVSIKDIFLTRGWPTLRG----SRAIDADGPWDVDAPAVARLREAGAVLLGKTTT 126
Query: 73 DEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 132
E + ++ YG NPW GGSS G+A AV + S+GTD GGSVR+PAS
Sbjct: 127 PEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPAS 186
Query: 133 YCGIFGFRPSHGAV---------STAGVIPMAQSFD 159
+CG FGF+P+ G V + A V PM ++
Sbjct: 187 FCGTFGFKPTFGRVPLYPASPFGTLAHVGPMTRTVA 222
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 105 bits (264), Expect = 3e-26
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 16 PLSGLTFAIKDIFDVDG--------HVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSI 67
L+G T A+KD V G + GF P + A V +L GAT +
Sbjct: 87 KLAGKTVALKDNVAVAGVPMMNGSSTLEGF-VPSF---------DATVVTRLLDAGATIV 136
Query: 68 GKTIMDEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSV 127
GK +++ +S G NP P GGSSSGSA V A VD ++G D GGS+
Sbjct: 137 GKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSI 196
Query: 128 RVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
R+P+++CGI+G +P+HG V G P+ ++ D +G
Sbjct: 197 RIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLG 231
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 100 bits (250), Expect = 2e-24
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 13 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIM 72
+LPL G+ A+KD DV G T FG AT+ + V + + GA +GKT
Sbjct: 78 DRLPLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNT 134
Query: 73 DEMAYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 132
E+ +G NPW+ D PGGSS GSA AV A LV ++G+D GSVR+PA+
Sbjct: 135 CELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAA 194
Query: 133 YCGIFGFRPSHGAVSTAGVIPMAQSF 158
+ + G +P G +ST P+ ++F
Sbjct: 195 WTHLVGIKPQRGRISTW---PLPEAF 217
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 96.4 bits (240), Expect = 5e-23
Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 16 PLSGLTFAIKD-IFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 74
PL G+ +KD I D T G+ A + T A V + GA +GK + E
Sbjct: 72 PLHGIPVLLKDNIDAADPMPTTAGS--LALAGNRPTRDAFLVARLRDAGAVILGKANLSE 129
Query: 75 MA-----YSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRV 129
A S +G + G NP+A DR P GSSSGS AV A L ++GT+T GS+
Sbjct: 130 WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITC 189
Query: 130 PASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
PA+ G+ G +P+ G VS G++P++ S DT G
Sbjct: 190 PAAINGLVGLKPTVGLVSRDGIVPISHSQDTAG 222
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 94.6 bits (235), Expect = 2e-22
Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 26/161 (16%)
Query: 11 SAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKT 70
+A +P S T+ +KD W A A V + GA +GK
Sbjct: 150 TAKVMPTSAGTYVLKD---------------WI-----ADQDATIVKQLKEEGAFVLGKA 189
Query: 71 IMDEMAYSIN-----GENKHYGTPTNPWAPDRV-PGGSSSGSAVAVGAKLVDFSLGTDTG 124
M E A ++ G + G NP+ P + GSSSGSA V A ++GT+T
Sbjct: 190 NMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETT 249
Query: 125 GSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
GS+ PA+ + G RPS G VS G+IP+A++ DT G A
Sbjct: 250 GSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMA 290
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 93.9 bits (234), Expect = 4e-22
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
L G+ A KD+ G T G+P +A A V + + GA IGKT E
Sbjct: 77 WLHGMPQAPKDLAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEF 134
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
+ N YG NP+ P R GGSS G+A A+ +++ + G+D GS+R PA++
Sbjct: 135 GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNN 194
Query: 136 IFGFRPSHGAV-------------STAGVIPMAQS 157
++GFRPS G V T G PM ++
Sbjct: 195 VYGFRPSQGRVPHGPGGDVFVQQLGTEG--PMGRT 227
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 93.5 bits (233), Expect = 4e-22
Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
SG+ IKD DV G T G+ W + A S L+ G S+GKT + E
Sbjct: 73 FFSGVPTFIKDNVDVAGLPTMHGSDAWTPRPAKADS--DFARQFLATGLISLGKTQLPEF 130
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
+S + E+ G NPW D G SS GSA V A +V + D GGS+R+PA+ CG
Sbjct: 131 GFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCG 190
Query: 136 IFGFRPSHG 144
+ G +PS G
Sbjct: 191 LVGLKPSRG 199
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 93.1 bits (232), Expect = 7e-22
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ IK+ G G A A + AP + GA + KT M +
Sbjct: 71 PLDGVPVTIKENIATRGVPVPLGTA--ATDLPPAAADAPPAARLREAGAVILAKTTMPDY 128
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
+G + +G NPW D+ PGGSS+G+ A A LGTD GGSVR+PA +CG
Sbjct: 129 GMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCG 188
Query: 136 IFGFRPSHGAV 146
I G +PS G +
Sbjct: 189 IVGLKPSLGRI 199
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 87.3 bits (217), Expect = 8e-20
Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL+G+ +K D G T G + A + +P V + GA IG+T
Sbjct: 72 PLAGVPVTVKVNVDQAGFATTNGVR--LQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAF 129
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
+Y +N +G NPW P PGGSS G+A AV A + + GTD GGS+R PA CG
Sbjct: 130 SYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACG 189
Query: 136 IFGFRPSHGAV 146
+ G RP+ G V
Sbjct: 190 VHGLRPTLGRV 200
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 85.1 bits (210), Expect = 6e-19
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 5 VLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGA 64
+L+ + +LP S T A+KD W A V + + GA
Sbjct: 236 LLKDNIGTKELPTSAGTVALKD---------------WVIGKDATI-----VENLKANGA 275
Query: 65 TSIGKTIMDEMAYSI-----NGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSL 119
+GKT M E A + NG + G NP++ + P GSSSGSA A + ++
Sbjct: 276 LILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAI 335
Query: 120 GTDTGGSVRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVG 162
GT+T GS+ PAS G++PS G V+ G+IP++ FDT G
Sbjct: 336 GTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPG 378
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 82.6 bits (204), Expect = 4e-18
Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 16 PLSGLTFAIKDIFDV-DGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDE 74
PL G+ +KD + D T G A ++ A V + GA +GK M E
Sbjct: 79 PLHGIPVLLKDNIETNDSMHTSAGT--IALEQHISSEDAFLVTKLREAGAVILGKANMTE 136
Query: 75 MAYSI-----NGENKHYGTPTNPWAP---DRVPGGSSSGSAVAVGAKLVDFSLGTDTGGS 126
+A + G + G NP+ D GGSS+GSA+AV A S+GT+T GS
Sbjct: 137 LANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGS 196
Query: 127 VRVPASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFA 165
+ PA + G +P+ G +S G+IP S DT G FA
Sbjct: 197 ILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFA 235
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 65.2 bits (159), Expect = 3e-12
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ + KD + V G G+P A A A + + + GA +GKT M M
Sbjct: 75 PLDGIPYTAKDSYLVKGLTAASGSP--AFKDLVAQRDAFTIERLRAAGAICLGKTNMPPM 132
Query: 76 AYSING--ENKHYGTPTNPWAPDRVPG----GSSSGSAVAVGAKLVDFSLGTDTGGSVRV 129
A NG + YG +P+ + GSS+G+ A A F L +T S R
Sbjct: 133 A---NGGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRG 189
Query: 130 PASYCGIFGFRPSHGAVSTAGVIPMAQSFDTV 161
PAS G+ + PS G +S G P+ + D V
Sbjct: 190 PASNNGLCAYTPSRGVISVRGNWPLTPTMDVV 221
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 61.0 bits (148), Expect = 8e-11
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 15 LPLSGLTFAIKDIF-DVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMD 73
P +G+ +KD+ ++ G ++ G+ + + T L L G +G++
Sbjct: 61 KPFAGVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDL--GFIILGRSNTP 118
Query: 74 EMAYSINGENKHYGTPTN-PWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 132
E + N + P N P+ R GGSS G+A V + +V + +D GGS+R+PAS
Sbjct: 119 EFGFK-NISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPAS 177
Query: 133 YCGIFGFRPSHGAVST 148
+ G+ G +PS G +
Sbjct: 178 FNGLIGLKPSRGRIPV 193
>gnl|CDD|200503 cd11242, Sema_6, The Sema domain, a protein interacting module, of
class 6 semaphorins (Sema6). Class 6 semaphorins
(Sema6s) are membrane associated semaphorins. There are
6 subfamilies named 6A to 6D. Sema6s bind to plexin As
in a neuropilin independent fashion. Sema6-plexin A
signaling plays important roles in lamina-specific axon
projections. Interactions between plexin A2, plexin A4,
and Sema6A control lamina-restricted projection of
hippocampal mossy fibers. Interactions between Sema6C,
Sema6D and plexin A1 shape the stereotypic trajectories
of sensory axons in the spinal cord. In addition to axon
targeting, Sema6D-plexin A1 interactions influence a
wide range of other biological processes. During cardiac
development, Sema6D attracts or repels endothelial cells
in the cardiac tube depending on the expression patterns
of specific coreceptors in addition to plexin A1.
Furthermore, Sema6D binds a receptor complex comprising
of plexin A1, Trem2 (triggering receptor expressed on
myeloid cells 2), and DAP12 on dendritic cells and
osteoclasts to mediate T-cell-DC interactions and to
control bone development, respectively. The Sema domain
is located at the N-terminus and contains four disulfide
bonds formed by eight conserved cysteine residues. It
serves as a receptor-recognition and -binding module.
Length = 465
Score = 31.3 bits (71), Expect = 0.37
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 54 PAVLAVLSGGATSI-GKTI----MDEMAYSINGENKHYGTPTNPWAP---DRVPG---GS 102
P VL V + SI G + MD++ G K +P + W P DRVP G
Sbjct: 262 PVVLGVFTTQYNSIPGSAVCAFDMDDIEKVFEGRFKEQKSPDSAWTPVPEDRVPKPRPGC 321
Query: 103 SSGSAVAVGAK 113
+GS A K
Sbjct: 322 CAGSGSAEKYK 332
>gnl|CDD|200384 TIGR04133, rSAM_w_lipo, radical SAM enzyme, rSAM/lipoprotein
system. Members of this protein family are radical SAM
enzymes with an additional 4Fe4S cluster-binding
C-terminal domain (TIGR04085) shared with PqqE and many
other peptide and protein-modifying radical SAM enzymes.
All members occur in the context of a predicted
lipoprotein that usually is encoded by an adjacent gene.
Length = 350
Score = 30.5 bits (69), Expect = 0.81
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 223 GDCRECDSWRLCEGQS 238
G+C +C WR CEG
Sbjct: 316 GECADCKYWRYCEGNG 331
>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated.
Length = 520
Score = 30.6 bits (69), Expect = 0.81
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 30 VDGHVTGFGNPDWARTHSAATSTAPAV-LAVLSGGATSIGKTIMDEMA 76
VDG T +G A T A + A + + ++GGA IG+ + D A
Sbjct: 243 VDGGWTVYGGSGPASTAQAPSPLAESPRVVAITGGARGIGRAVADRFA 290
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 30.3 bits (68), Expect = 1.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 157 SFDTVGWFAWDPKILNRVGRVLLQLPDDASLVRPSQVIFAEDCLQLSSIP 206
S DTV +AW+ +R+ + ++ S R +Q++ A + L+SIP
Sbjct: 488 SMDTVKCYAWEKSFESRIQGIR---NEELSWFRKAQLLSAFNSFILNSIP 534
>gnl|CDD|192864 pfam11886, DUF3406, Domain of unknown function (DUF3406). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is about 270
amino acids in length. This domain is found associated
with pfam04548.
Length = 275
Score = 29.7 bits (67), Expect = 1.2
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 62 GGATSIG---KTIMDEMAYSINGENKHYGTPTNPWAPDRVPGGSSS---GSAVAVGAKLV 115
G +TS+G +T+ ++AY++ GE K + ++ GG S G VA G KL
Sbjct: 100 GKSTSLGFDIQTVGKDLAYTLRGETK-----FKNFKKNKTTGGLSVTFLGDTVATGVKLE 154
Query: 116 D-FSLG 120
D S+G
Sbjct: 155 DKLSVG 160
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 29.4 bits (66), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 34 VTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYS 78
V+G+G RT A S+ + V G+T +G+ +M+ A S
Sbjct: 207 VSGYG-----RTCGNAISSHMDIDKVAFTGSTLVGRKVMEAAAKS 246
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 28.9 bits (65), Expect = 2.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGG 125
A + G+ HY PD V ++S +A + G K + +LG D G
Sbjct: 104 ALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHG 153
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 28.6 bits (64), Expect = 3.3
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 12 AHQLPLSGLTFA-------IKD-IFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGG 63
A Q PLS L +A + D + +V VTGFG T AA ++ V V G
Sbjct: 194 AEQTPLSALFYAHLAKLAGVPDGVINV---VTGFGP-----TAGAAIASHMDVDKVSFTG 245
Query: 64 ATSIGKTIMDEMAYS 78
+T +G+ IM A S
Sbjct: 246 STEVGRKIMQAAATS 260
>gnl|CDD|200531 cd11270, Sema_6E, The Sema domain, a protein interacting module,
semaphorin 6E (sema6E). Sema6E is expressed
predominantly in the nervous system during
embryogenesis. It binds Plexin A1 and might utilize it
as a receptor to repel axons of specific types during
development. Sema6E acts as a repellent to dorsal root
ganglion axons as well as sympathetic axons. Sema6E is a
member of the class 6 semaphorin family of proteins,
which are membrane associated semaphorins. Semaphorins
are regulatory molecules in the development of the
nervous system and in axonal guidance. They also play
important roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 462
Score = 28.2 bits (62), Expect = 4.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 54 PAVLAVLSGGATSIGKT-----IMDEMAYSINGENKHYGTPTNPWAP---DRVP 99
PAVL V + A SI + MD++ NG+ K + W P + VP
Sbjct: 260 PAVLGVFTTQANSITGSAVCAFYMDDIEKVFNGKFKEQRNSESAWTPVPDEAVP 313
>gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 28.4 bits (64), Expect = 4.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 58 AVLSGGATSIGKTIMDE----MAYSINGENK 84
A+L GGA +G T+M+E MA S +G K
Sbjct: 776 AMLRGGANDLGGTLMEETISRMAGSEHGSAK 806
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 27.8 bits (62), Expect = 6.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 4 FVLQPSSSAHQLPLSGLTFAI--------KDIFDVDGHVTGFGNPDWARTHSAATSTAPA 55
V++P A Q PLS L A K + +V +TG A+ +T+P
Sbjct: 148 VVVKP---AEQTPLSALALARLAEQAGIPKGVLNV---ITG----SRAKEVGNVLTTSPL 197
Query: 56 VLAVLSGGATSIGKTIMDEMAYSI 79
V + G+T++GK +M + A ++
Sbjct: 198 VRKISFTGSTNVGKILMKQSASTV 221
>gnl|CDD|107297 cd06302, PBP1_LsrB_Quorum_Sensing, Periplasmic binding domain of
autoinducer-2 (AI-2) receptor LsrB from Salmonella
typhimurium and its close homologs. Periplasmic binding
domain of autoinducer-2 (AI-2) receptor LsrB from
Salmonella typhimurium and its close homologs from other
bacteria. The members of this group are homologous to a
family of periplasmic pentose/hexose sugar-binding
proteins that function as the primary receptors for
chemotaxis and transporters of many sugar based solutes
in bacteria and archaea and that are a member of the
type I periplasmic binding protein superfamily. LsrB
binds a chemically distinct form of the AI-2 signal that
lacks boron, in contrast to the Vibrio harveyi AI-2
signaling molecule that has an unusual furanosyl borate
diester. Hence, many bacteria coordinate their gene
expression according to the local density of their
population by producing species specific AI-2. This
process of quorum sensing allows LsrB to function as a
periplasmic AI-2 binding protein in interspecies
signaling.
Length = 298
Score = 27.6 bits (62), Expect = 6.6
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 64 ATSIGKTIMDEMAYSINGENKH---YGTPTNP----WA 94
+IG+T+MD +A + G+ ++ G+ T W
Sbjct: 105 NKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWI 142
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 27.3 bits (61), Expect = 7.3
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 5 VLQPSSSAHQLPLSGLTFA--IKD------IFDVDGHVTGFGNPDWARTHSAATSTAPAV 56
VL+P A Q PL+ L A IK+ + +V V G+G T AA S+ P +
Sbjct: 177 VLKP---AEQTPLTALYLASLIKEAGFPPGVVNV---VPGYG-----PTAGAAISSHPDI 225
Query: 57 LAVLSGGATSIGKTIM 72
V G+T +GK I
Sbjct: 226 DKVAFTGSTEVGKLIQ 241
>gnl|CDD|201520 pfam00945, Rhabdo_ncap, Rhabdovirus nucleocapsid protein. The
Nucleocapsid (N) Protein is said to have a "tight"
structure. The carboxyl end of the N-terminal domain
possesses an RNA binding domain. Sequence alignments
show 2 regions of reasonable conservation, approx.
64-103 and 201-329. A whole functional protein is
required for encapsidation to take place.
Length = 406
Score = 27.3 bits (61), Expect = 8.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 142 SHGAVSTAGVIPMAQSFDTVGWFAW 166
+ ++ G +S D V W AW
Sbjct: 358 TDAPLADDGDDEAPKSRDVVEWLAW 382
>gnl|CDD|220993 pfam11133, Phage_head_fibr, Head fiber protein. This head fiber
protein is also refereed to as Gp8.5. Gp8.5 is a
structural protein in phage. It is a dispensable head
protein.
Length = 277
Score = 26.9 bits (59), Expect = 9.0
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
Query: 24 IKDIFDVDGHVTGFGNPDWARTHSAATS----TAPAVLAVLSGGATSIGKTIMDEMAYSI 79
++D+ V F A + A + P L+ L G + K + M +
Sbjct: 167 LEDLLLSSLLVKAFLVMPTADINKANLEKLAVSNPKALSSLDGLPSKEDKAKLRGMIGAG 226
Query: 80 NGENKHYGTPTNPWAPDRVPG-GSSSGSAVAVGAK 113
N T T + S+ + VAV K
Sbjct: 227 NPYTLPAATTTTLGGVKQAAAVNDSTATDVAVSVK 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,138,596
Number of extensions: 1128302
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 63
Length of query: 239
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 145
Effective length of database: 6,768,326
Effective search space: 981407270
Effective search space used: 981407270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)