RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037166
(239 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 134 bits (337), Expect = 2e-37
Identities = 59/152 (38%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
L G+ IKD +G T + ST L A IGK MDE
Sbjct: 70 KLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKE--NAVLIGKLNMDEF 127
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A + E ++ NP+ VPGGSS GSA AV A LV SLG+DTGGS+R PA+YCG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWD 167
+ G +P++G VS G++ A S D +G +
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN 219
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 133 bits (336), Expect = 3e-37
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
G+ AIKD G T + + + A V + G +GK +DE
Sbjct: 57 KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEF 114
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A + E + NPW +RVPGGSS GSA AV A +V +LG+DTGGSVR PAS CG
Sbjct: 115 AMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCG 174
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWD 167
+ G++P++G VS G++ A S D +G
Sbjct: 175 VVGYKPTYGLVSRYGLVAFASSLDQIGPITKT 206
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 81.3 bits (199), Expect = 2e-18
Identities = 56/162 (34%), Positives = 77/162 (47%), Gaps = 8/162 (4%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ +KD + T G+ A V + GA +GKT + E
Sbjct: 73 PLHGIPLLLKDNINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTNLSEW 129
Query: 76 A-----YSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVP 130
A SI+G + G NP+ P GSSSGSAVAV A L ++GT+T GS+ P
Sbjct: 130 ANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCP 189
Query: 131 ASYCGIFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILN 172
A+ G+ G +P+ G VS G+IP++ S DT G A
Sbjct: 190 AAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAA 231
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 73.6 bits (179), Expect = 9e-16
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
L G+ ++K+ F GH + G + S V + GA T + +
Sbjct: 97 LLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQS 154
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
S + N +G NPW + PGGSS G +G+ LGTD GGS+R P+++CG
Sbjct: 155 MLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 214
Query: 136 IFGFRPSHGAVSTAGVIP----MAQSFDTVGWFAWDPKILNRV 174
I G +P+ +S +G+ ++G A D + L
Sbjct: 215 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALC 257
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 63.6 bits (153), Expect = 2e-12
Identities = 67/223 (30%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 16 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 75
PL G+ IKDI D T G+ + S AP V+ + GAT IGKT
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAF 110
Query: 76 AYSINGENKHYGTPTNPWAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
A NP PGGSSSGSA AVGA ++ +LGT TGGSV PA+YCG
Sbjct: 111 ASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCG 164
Query: 136 IFGFRPSHGAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLL---QLPDDASLVRPSQ 192
+PS + T GV + + DTVG F + L R + + P
Sbjct: 165 TAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRI 224
Query: 193 VIFAEDCLQLSSIPSDRITQGLVKSVEKLFGDCRECDSWRLCE 235
+ ++ +++ Q +K+ E+ + D
Sbjct: 225 GVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 165
Score = 26.3 bits (58), Expect = 2.9
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 20/75 (26%)
Query: 169 KILNRVGRVLLQLPDDASLVRPSQVIFAEDCLQLSSIPSD--------------RITQGL 214
KI + +L L P +++ L + P ++ GL
Sbjct: 16 KIQADGAELQERLCAAHKLCHPEELMLLRHSLGIPQAPLSSCSSQSLQLRGCLNQLHGGL 75
Query: 215 V------KSVEKLFG 223
+++ +
Sbjct: 76 FLYQGLLQALAGISP 90
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 25.2 bits (54), Expect = 5.8
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 104 SGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 135
G VG + +F L + +
Sbjct: 12 GGHFPQVGEIVENFIL-VGNDLADVALNDFAS 42
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 346
Score = 25.0 bits (54), Expect = 8.9
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 24 IKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVL 60
I+ D G +H +T A L ++
Sbjct: 183 IRRSMSYDN---GLAQGAGLESHGGSTFCGIASLCLM 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 900,962
Number of extensions: 40189
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 11
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)