Your job contains 1 sequence.
>037167
LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPD
VPYLLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVP
VHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGI
VDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGR
PHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYL
HAYQLFLSHPTTNEVIKITAPLPSVLKTREEGREVDKSVGSERIRGIQIDSLP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037167
(353 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 187 3.4e-19 2
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 187 3.4e-19 2
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 173 2.0e-18 2
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 152 2.6e-17 3
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 225 2.7e-17 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 185 3.7e-16 2
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 146 4.6e-15 3
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 166 9.2e-15 2
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 171 1.5e-14 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 175 3.1e-14 2
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 161 3.3e-14 2
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 157 3.1e-13 2
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 149 4.1e-13 3
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 190 1.0e-12 1
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 137 5.2e-12 3
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 137 5.2e-12 3
DICTYBASE|DDB_G0281097 - symbol:DDB_G0281097 "pseudouridi... 188 6.2e-12 1
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 175 7.8e-12 2
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 177 2.9e-11 1
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 126 4.3e-11 3
TIGR_CMR|CJE_0022 - symbol:CJE_0022 "RNA pseudouridine sy... 151 8.0e-11 2
UNIPROTKB|E1C0L7 - symbol:RPUSD1 "Uncharacterized protein... 146 8.3e-11 2
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 142 3.2e-10 2
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 142 3.2e-10 2
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 136 3.4e-10 2
WB|WBGene00019498 - symbol:K07E8.7 species:6239 "Caenorha... 169 5.4e-10 1
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 106 1.6e-09 3
TIGR_CMR|CPS_3649 - symbol:CPS_3649 "tRNA pseudouridine s... 101 2.1e-09 3
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 154 3.1e-09 2
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 157 6.4e-09 1
RGD|1306147 - symbol:Rpusd2 "RNA pseudouridylate synthase... 161 7.0e-09 1
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 122 7.9e-09 2
MGI|MGI:1918066 - symbol:Rpusd2 "RNA pseudouridylate synt... 160 9.2e-09 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 160 1.0e-08 1
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 134 1.4e-08 2
TIGR_CMR|CJE_0808 - symbol:CJE_0808 "RNA pseudouridine sy... 137 1.9e-08 2
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 149 1.9e-08 2
UNIPROTKB|B4DDD1 - symbol:RPUSD2 "cDNA FLJ57803, highly s... 155 2.7e-08 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 151 2.9e-08 1
UNIPROTKB|Q8IZ73 - symbol:RPUSD2 "RNA pseudouridylate syn... 155 3.2e-08 1
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 154 3.4e-08 1
UNIPROTKB|F1N088 - symbol:RPUSD2 "Uncharacterized protein... 154 4.3e-08 1
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 153 4.5e-08 1
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 148 5.9e-08 1
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 147 7.9e-08 1
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 147 7.9e-08 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 146 9.5e-08 1
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 141 1.0e-07 2
ASPGD|ASPL0000068180 - symbol:AN10936 species:162425 "Eme... 154 1.2e-07 2
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 93 3.2e-07 3
UNIPROTKB|F1PK69 - symbol:RPUSD2 "Uncharacterized protein... 146 3.4e-07 1
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 126 8.0e-07 2
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 126 8.0e-07 2
UNIPROTKB|O07166 - symbol:Rv3300c "Pseudouridine synthase... 101 8.9e-07 2
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 118 1.2e-06 3
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 106 1.7e-06 3
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 106 1.7e-06 3
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 112 2.9e-06 3
UNIPROTKB|P0AA41 - symbol:truC species:83333 "Escherichia... 111 7.1e-06 2
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 131 1.2e-05 1
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 127 2.8e-05 1
TAIR|locus:2037593 - symbol:AT1G78910 species:3702 "Arabi... 128 2.8e-05 1
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 92 4.6e-05 3
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 125 8.4e-05 1
UNIPROTKB|H3BSG4 - symbol:RPUSD1 "RNA pseudouridylate syn... 103 0.00014 2
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 118 0.00017 1
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 121 0.00021 1
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 90 0.00021 3
UNIPROTKB|H3BMZ6 - symbol:RPUSD1 "RNA pseudouridylate syn... 103 0.00021 2
UNIPROTKB|H3BQN8 - symbol:RPUSD1 "RNA pseudouridylate syn... 103 0.00023 2
TIGR_CMR|CPS_3679 - symbol:CPS_3679 "RNA pseudouridine sy... 104 0.00027 2
TAIR|locus:2824464 - symbol:AT1G56345 species:3702 "Arabi... 77 0.00051 3
DICTYBASE|DDB_G0280463 - symbol:DDB_G0280463 "Ribosomal l... 93 0.00057 4
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 114 0.00065 1
TIGR_CMR|GSU_3160 - symbol:GSU_3160 "RNA pseudouridine sy... 110 0.00087 1
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 90 0.00091 2
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 187 (70.9 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 58/166 (34%), Positives = 85/166 (51%)
Query: 161 VMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDV 220
V L +R +T+ Y A+V G + +I K PIG R+ + L SP GK A++ V
Sbjct: 159 VRALQKRDVTREYEAIVIGTMTAGGMIDK-PIG--RH-STKRTLMSVSPMGKHAVTHYRV 214
Query: 221 LERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQ---PKSFDSEFADG 277
E R T +++ +++GR HQIR+H+A+L HPLLGD Y GG+ PK E +
Sbjct: 215 AEHF--REHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAY--GGRARIPKGATEELTE- 269
Query: 278 TFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
+D ++R LHA L HP T E ++ AP+P
Sbjct: 270 -MIRD--FDRQA----------LHAVMLKFEHPVTGEELEFHAPVP 302
Score = 98 (39.6 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 38/131 (29%), Positives = 55/131 (41%)
Query: 17 LQGWLQRIQNGQITVDGRVVNDPNIILSAGSEL-VYHRLP----WKEPDVPXXXXXXXXX 71
L+ WL G+I V+G V+ P + G + V L W+ D+P
Sbjct: 36 LKEWLLE---GKIAVNGDVITKPRTKVMGGEVITVQAELEDEQRWEAQDLPLNIVYEDDD 92
Query: 72 XXXIALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGI 131
I +NKP V PG +TVLN L + VHRL + T+G+
Sbjct: 93 I--IVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGI-----VHRLDKDTTGL 145
Query: 132 LLCAKTKLAKT 142
++ AKT A+T
Sbjct: 146 MVVAKTVPAQT 156
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 187 (70.9 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 58/166 (34%), Positives = 85/166 (51%)
Query: 161 VMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDV 220
V L +R +T+ Y A+V G + +I K PIG R+ + L SP GK A++ V
Sbjct: 159 VRALQKRDVTREYEAIVIGTMTAGGMIDK-PIG--RH-STKRTLMSVSPMGKHAVTHYRV 214
Query: 221 LERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQ---PKSFDSEFADG 277
E R T +++ +++GR HQIR+H+A+L HPLLGD Y GG+ PK E +
Sbjct: 215 AEHF--REHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAY--GGRARIPKGATEELTE- 269
Query: 278 TFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
+D ++R LHA L HP T E ++ AP+P
Sbjct: 270 -MIRD--FDRQA----------LHAVMLKFEHPVTGEELEFHAPVP 302
Score = 98 (39.6 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 38/131 (29%), Positives = 55/131 (41%)
Query: 17 LQGWLQRIQNGQITVDGRVVNDPNIILSAGSEL-VYHRLP----WKEPDVPXXXXXXXXX 71
L+ WL G+I V+G V+ P + G + V L W+ D+P
Sbjct: 36 LKEWLLE---GKIAVNGDVITKPRTKVMGGEVITVQAELEDEQRWEAQDLPLNIVYEDDD 92
Query: 72 XXXIALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGI 131
I +NKP V PG +TVLN L + VHRL + T+G+
Sbjct: 93 I--IVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGI-----VHRLDKDTTGL 145
Query: 132 LLCAKTKLAKT 142
++ AKT A+T
Sbjct: 146 MVVAKTVPAQT 156
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 173 (66.0 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 57/163 (34%), Positives = 82/163 (50%)
Query: 161 VMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDV 220
V +L R +++IY +V G+V I PIG R+ G + GK A+S V
Sbjct: 158 VAQLQSRSVSRIYECIVIGVVTAGGKI-NAPIG--RH-GQQRQRMAVMEGGKQAVSHYRV 213
Query: 221 LERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFA 280
LER R+ T V+V++++GR HQIR+H+A + PL+GDP Y GG+ + + A T
Sbjct: 214 LERF--RSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAY--GGRFRIPPA--ASQTMV 267
Query: 281 QDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
+ P LHA L L HPTT + +PLP
Sbjct: 268 DS------LKNFPRQA---LHARFLELDHPTTGIRMSWESPLP 301
Score = 108 (43.1 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 49/177 (27%), Positives = 75/177 (42%)
Query: 10 KHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGS--ELVYHRLP---WKEPDVPXX 64
+H S L W I++G++TVDG V+ P I+ GS EL + W D+
Sbjct: 30 EHSRSR-LSAW---IKDGRLTVDGAVIR-PRDIVHGGSILELTAEQEAQGEWIAQDIELD 84
Query: 65 XXXXXXXXXXIALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRL 124
+ +NKP+GL V P T+LN L VHRL
Sbjct: 85 IVYEDDDI--LVINKPAGLVVHPAAGHADGTLLNALLHHIPDIINVPRAGI-----VHRL 137
Query: 125 GRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIV 181
+ T+G+++ AKT A+T + V +L R +++IY +V G+V
Sbjct: 138 DKDTTGLMVVAKTIQAQTQL----------------VAQLQSRSVSRIYECIVIGVV 178
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 152 (58.6 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
Identities = 36/99 (36%), Positives = 60/99 (60%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
+ +R + K Y LV G + + I+ P+G R P + + V S +G+PA + VL
Sbjct: 158 QFKERTVRKYYLTLVQGELHPAEGFIEAPLG--RDPQNRQKIAVVS-NGRPARTGYKVL- 213
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
R +Q +L++V++++GR HQIR+H A +GHP+ GD +Y
Sbjct: 214 RYIQ-GYSLLEVKLETGRTHQIRVHFAAIGHPVAGDAVY 251
Score = 95 (38.5 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
Identities = 37/153 (24%), Positives = 65/153 (42%)
Query: 4 IEFYSTKHKNSAPLQGWLQR-IQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVP 62
++ Y T+ K + + ++Q ++ G I V+G+ P++ L G + P P++
Sbjct: 15 LDKYITQ-KETDLSRSFIQELVEAGHIQVNGKNAK-PSLKLKNGDTITIEIPPETPPELK 72
Query: 63 XXXX---XXXXXXXXIALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPV 119
+ +NKP GL V P T++N + P
Sbjct: 73 AEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVL--ALEPEMEDFDDPLRPG 130
Query: 120 PVHRLGRGTSGILLCAKTKLAKTCIAGYFADKT 152
VHRL + TSG+LL AK + A ++ F ++T
Sbjct: 131 IVHRLDKDTSGLLLVAKNREALANLSAQFKERT 163
Score = 58 (25.5 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 299 YLHAYQLFLSHPTTNEVIKITAPLP----SVLKTRE 330
+LHA++L S P+ + ++ ++PLP LKT E
Sbjct: 262 FLHAHRLSFSLPSNGQNVEFSSPLPPDLEEALKTLE 297
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 225 (84.3 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 82/308 (26%), Positives = 134/308 (43%)
Query: 24 IQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDV-PXXX--XXXXXXXXXIALNKP 80
I G ++VDG+VV DP + G+++ +E + P I ++KP
Sbjct: 41 ITEGAVSVDGQVVTDPKARVVEGAQVAIALTEAEESHIAPEAIPLVVVYEDDDLIVIDKP 100
Query: 81 SGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLA 140
+G+ V P T++N L P VHR+ + TSG+L+ AK+ A
Sbjct: 101 AGMVVHPAPGTPSGTLVNALL-AHCGDNLSGVGGVKRPGIVHRIDKDTSGLLVVAKSDAA 159
Query: 141 KTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGV 200
+A FA ++ + + ++ R V G E I++ + R+P
Sbjct: 160 HHGLAAQFAAHSAERHYTALCYGVPDGSDPRL-RG-VKGASFEPGNILRLTTQLTRHPTD 217
Query: 201 AKGLYVASPSGKPALSKVDVLERDVQRNC-TLVQVEIQSGRPHQIRIHLAFLGHPLLGDP 259
+ V G+ A+++ V+E Q +L+ +++GR HQIR+H+A GH LLGDP
Sbjct: 218 RQRQAVVFHGGRHAVTRARVVESFGQPAAVSLIDCWLETGRTHQIRVHMAHAGHGLLGDP 277
Query: 260 LYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKIT 319
+Y GG+ K + G + R LHA L HP + E + +
Sbjct: 278 VY--GGRRKLSPRALSPEAVDAIGAFPRQA----------LHAAVLGFEHPLSGEKLSFS 325
Query: 320 APLPSVLK 327
APLP L+
Sbjct: 326 APLPDDLE 333
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 185 (70.2 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 159 STVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKV 218
S ++ ++K + Y +VHG + + II PIG R+P + + V S +GK A +
Sbjct: 158 SLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPIG--RHPRDRQKMAVVS-NGKTAQTVY 214
Query: 219 DVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSF 270
VLE + + TL+Q ++ +GR HQIR+H ++LGHP+LGDP Y G Q F
Sbjct: 215 KVLE-EFNKGFTLIQAKLLTGRTHQIRVHFSYLGHPVLGDPKY--GHQNNPF 263
Score = 86 (35.3 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 43/176 (24%), Positives = 72/176 (40%)
Query: 24 IQNGQITVDGRVVNDPNIILSAGSELVYHRLP------WKEPDVPXXXXXXXXXXXXIAL 77
I+ G++TV+G ++ G E++ LP K ++P + +
Sbjct: 39 IEEGKVTVNG--LHRKASYKVRGGEIIAVLLPPPRELSVKPEEIPLDIVYEDEDL--VVV 94
Query: 78 NKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKT 137
NK +G+ V P T++N L + P VHRL + TSG+L+ AK
Sbjct: 95 NKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVL--RPGIVHRLDKDTSGLLVVAKN 152
Query: 138 KLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIG 193
LA +A ++ ++K + Y +VHG + + II PIG
Sbjct: 153 DLAHQSLAE----------------QIKEKKAVREYWTIVHGYLKNKEGIIDLPIG 192
Score = 69 (29.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 282 DGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
D Y NP G LHA +L HP + E+++ TAPLP
Sbjct: 253 DPKYGHQNNPF-GVKRQMLHAIKLSFIHPRSGELLEFTAPLP 293
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 146 (56.5 bits), Expect = 4.6e-15, Sum P(3) = 4.6e-15
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
+ +RK K Y A + G ++ + P+ IV +P + + V +GKPA++ VL
Sbjct: 84 QFEERKTRKTYVARLWGRLEPKTGTVDLPL-IVDWPNRPRQM-VCHETGKPAVTDWRVLR 141
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAG 264
+ + T V++ ++GR HQ+R+H LGHP+LGDP Y G
Sbjct: 142 --YEGDTTRVRLLPRTGRSHQLRVHCQALGHPILGDPFYATG 181
Score = 70 (29.7 bits), Expect = 4.6e-15, Sum P(3) = 4.6e-15
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 75 IALNKPSGLQVLPG-GLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILL 133
I LNKP+GL +PG G +L+++Q + VHRL R TSG+++
Sbjct: 22 IVLNKPAGLLSVPGRGAHLADCLLSRVQ-----------AAFPGALLVHRLDRDTSGVMV 70
Query: 134 CAKTKLAKTCIAGYFADK 151
A+T A+ + F ++
Sbjct: 71 FAQTPHAQRNLGRQFEER 88
Score = 47 (21.6 bits), Expect = 4.6e-15, Sum P(3) = 4.6e-15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLP 323
LH+ +L L HP + + AP P
Sbjct: 191 LHSEELRLKHPESGRSMTFRAPAP 214
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 166 (63.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 51/178 (28%), Positives = 85/178 (47%)
Query: 161 VMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDV 220
+ + R+I + Y A+V G++ + I + P+G R+P + + G+PA++ +
Sbjct: 164 IKAMKARQIVREYEAIVKGVLISGRTI-EAPVG--RHP-IHRTRMAVVEFGRPAITHFRI 219
Query: 221 LERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFA 280
++R R T ++V++++GR HQIR+H+A + HPL GDP+Y G +D
Sbjct: 220 IKR--YRAHTHIRVQLETGRTHQIRVHMAHIHHPLAGDPVY---GSHVGIPVHLSDPLQT 274
Query: 281 QDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPSVLKTREEGREVDKS 338
+R LHA L SHP + APLP+ + E E D S
Sbjct: 275 ALKTLKRQA----------LHAATLQFSHPVDQRPMACHAPLPADMAHLLECLEDDYS 322
Score = 82 (33.9 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 45/177 (25%), Positives = 72/177 (40%)
Query: 17 LQGWLQRIQNGQITVDG------RVVNDPNIILSAGSELVYHRLPWKEPDVPXXXXXXXX 70
LQ W I+ G + VDG R N + ++L + W +P
Sbjct: 41 LQNW---IRGGHVKVDGIQKTKAREKVRENQFIEIEAQLEPNER-WVPQPIPLDVIYEDE 96
Query: 71 XXXXIALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSG 130
+ +NKP GL V PG + +T++N L +HRL + TSG
Sbjct: 97 TL--LVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGI-----IHRLDKDTSG 149
Query: 131 ILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVI 187
+LL A+T +A + A +I A + R+I + Y A+V G++ + I
Sbjct: 150 LLLIART------LASHHA----LIKA------MKARQIVREYEAIVKGVLISGRTI 190
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 171 (65.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 53/171 (30%), Positives = 91/171 (53%)
Query: 155 IDADSTVME-LSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVA-SPSGK 212
+ A + ++E L +R+IT+ Y A+ G + + +PI R+P K ++A P GK
Sbjct: 152 VPAQTRLVESLQRREITREYEAVAIGHMTAGGTV-DEPIS--RHP--TKRTHMAVHPMGK 206
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDS 272
PA++ ++E R T +++ +++GR HQIR+H+A + HPL+GDP+Y GG+P+
Sbjct: 207 PAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY--GGRPRP--- 259
Query: 273 EFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
G E ++ + LHA L L HP + ++ AP+P
Sbjct: 260 --------PKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302
Score = 74 (31.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 32/124 (25%), Positives = 52/124 (41%)
Query: 24 IQNGQITVDGRVVNDPNIILSAGSEL-----VYHRLPWKEPDVPXXXXXXXXXXXXIALN 78
I + ++ V+G+V + P + G ++ + ++ D+P I +N
Sbjct: 40 ILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDI--IIIN 97
Query: 79 KPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTK 138
KP L V PG TVLN L VHRL + T+G+++ AKT
Sbjct: 98 KPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI-----VHRLDKDTTGLMVVAKTV 152
Query: 139 LAKT 142
A+T
Sbjct: 153 PAQT 156
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 175 (66.7 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 46/116 (39%), Positives = 67/116 (57%)
Query: 151 KTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPS 210
K S+I A+ L +R+I KIY AL+ G + + II P+G++ + K V P
Sbjct: 144 KFSLI-AEMLNNSLRKRQINKIYLALIEGPLADKSGIINLPLGLLE-GSIIKRAVV--PG 199
Query: 211 GKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQ 266
G+PA +K ++ TL++VE+ +GR HQIR H A +GHPL GD LY GG+
Sbjct: 200 GQPACTKYQTVKAFPTH--TLLKVELLTGRTHQIRAHFAAIGHPLAGDDLY--GGK 251
Score = 63 (27.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSVLK 327
LH Y + HP T + I + APLP K
Sbjct: 260 LHLYYISFPHPITKKTISLYAPLPRDFK 287
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 161 (61.7 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 45/118 (38%), Positives = 64/118 (54%)
Query: 145 AGYF-ADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKG 203
AG+ KT+ + M + + I + Y ALVH + IK+PI R G K
Sbjct: 142 AGFLIVAKTNPAHLSLSQM-IKEGVIRREYLALVHSVPASLSGEIKKPIK--R--GQRK- 195
Query: 204 LYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+ + SGKPAL+ V+ R V R C+LV + SGR HQIR+H+ +G P++GD LY
Sbjct: 196 MMIGRCSGKPALTYYGVIARTVDRKCSLVHCRLGSGRTHQIRLHMKSIGCPVVGDKLY 253
Score = 83 (34.3 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 24 IQNGQITVDGRVVNDPNIILSAGSELVYHRLPW-KEPDVPXXXXXXXXXXXX--IALNKP 80
I+ +I +G++ +P+ + G E LP ++P + + KP
Sbjct: 35 IKGSRIESEGKIQLEPSRRVVVGEEYHLFDLPLERKPRHAFVQPLDVRYEDDCLLVIYKP 94
Query: 81 SGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLA 140
+GL V PG +++T++N L+ P VHRL + T+G L+ AKT A
Sbjct: 95 AGLVVHPGIGNREQTLVNILE-HHYPTEKLSSLDSSRPGIVHRLDKDTAGFLIVAKTNPA 153
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 157 (60.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 52/145 (35%), Positives = 73/145 (50%)
Query: 121 VHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGI 180
VHRL TSGI++ A K A I+ F QRK K Y A V G+
Sbjct: 63 VHRLDMATSGIMIMALNKPAHVAISRQF----------------EQRKTQKSYLARVWGL 106
Query: 181 VDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLER----DVQRNCTLVQVEI 236
V+ ++ + P+ I +P K V +GK +L+ VL D Q N TL+++
Sbjct: 107 VELNEGSVDLPL-ISDWPNRPKQK-VDHENGKKSLTHYRVLSHNDSIDEQAN-TLLELTP 163
Query: 237 QSGRPHQIRIHLAFLGHPLLGDPLY 261
+GR HQ+R+H+ LGHP+LGD LY
Sbjct: 164 ITGRSHQLRVHMLALGHPILGDRLY 188
Score = 61 (26.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSV 325
LHA +L L HP T + I AP P +
Sbjct: 202 LHALKLSLFHPRTEQAITFDAPCPFI 227
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 149 (57.5 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 37/106 (34%), Positives = 58/106 (54%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALS 216
AD+ +L R++TK Y A V G E +VI+++P+ ++ P +A V K A
Sbjct: 254 ADNIGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIE-PRLALNA-VCQMDEKGAKH 311
Query: 217 KVDVLER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
V R ++V+ + +GR HQIR+HL +LGHP+ DP+Y
Sbjct: 312 AKTVFNRISYDGKTSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIY 357
Score = 87 (35.7 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 31/115 (26%), Positives = 51/115 (44%)
Query: 24 IQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPXXXXXXXXXXXXI-ALNKPSG 82
I+NG + ++ D + ++ G +L+ H++ EP V I ++KPSG
Sbjct: 148 IENGDVHINDETA-DLSTVIRNG-DLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSG 205
Query: 83 LQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKT 137
+ V P G ++ T+ LQ P +RL R TSG++ AKT
Sbjct: 206 IPVHPTGRYRFNTITKMLQNNLGFVVN----------PCNRLDRLTSGLMFLAKT 250
Score = 41 (19.5 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 290 NPVPGDCGYYLHAYQLFLSHPT 311
+P P D +LHAY L+ S T
Sbjct: 420 DPGPNDLDLWLHAY-LYESTET 440
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 190 (71.9 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 77/258 (29%), Positives = 113/258 (43%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
I LNKP+GL V GG Q R V +P VHRL + TSG+L+
Sbjct: 101 IVLNKPAGLAV-QGGSGQTRHV-------DGLSEALRFGNDENPRLVHRLDKDTSGVLVL 152
Query: 135 AKTKLAKTCIAGYFADKTS-----VIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIK 189
A+T+ A + F + + + A L + K T + +A HG E
Sbjct: 153 ARTREAAARLTAAFRHRNTRKIYWALVAGVPTPYLGEIK-TGLVKAGGHGARGEG----- 206
Query: 190 QPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLA 249
+ + +V + A+P K A + L R V + V +E +GR HQ+R H+A
Sbjct: 207 EKMNVVHLSELD-----ATPGAKRAHTYYATLYR-VAGRASWVAMEPVTGRTHQLRAHMA 260
Query: 250 FLGHPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSH 309
+GHP++GD Y GQ DG AQ GG ++ +LHA L H
Sbjct: 261 GIGHPIIGDGKYGGSGQ-----ENLGDGWGAQLGGI---ISKK-----LHLHARSLSFEH 307
Query: 310 PTTNEVIKITAPLPSVLK 327
P+T + + TAPLP ++
Sbjct: 308 PSTRKKVTFTAPLPEHMR 325
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 137 (53.3 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
+ ++ + K Y ALV G D + ++ P+ + +P+GKP+ ++ +LE
Sbjct: 168 QFREKTVQKYYYALVMGHWDAECKVVNAPL----LKNEVNSIVRVNPNGKPSETRFRILE 223
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+ + TLVQ +GR HQIR+H ++GHP+ D Y
Sbjct: 224 KFAE--ATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRY 260
Score = 71 (30.1 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 121 VHRLGRGTSGILLCAKTKLAKTCIAGYFADKT 152
VHR+ R TSGILL AK + A + F +KT
Sbjct: 142 VHRIDRDTSGILLVAKKRSALRHLQAQFREKT 173
Score = 51 (23.0 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 299 YLHAYQLFLSHPTTNEVIKITAPLPSVLK 327
+LHA + HP + + ++I APL + L+
Sbjct: 278 FLHAANIQFVHPASEKKLEIHAPLEAHLE 306
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 137 (53.3 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
+ ++ + K Y ALV G D + ++ P+ + +P+GKP+ ++ +LE
Sbjct: 168 QFREKTVQKYYYALVMGHWDAECKVVNAPL----LKNEVNSIVRVNPNGKPSETRFRILE 223
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+ + TLVQ +GR HQIR+H ++GHP+ D Y
Sbjct: 224 KFAE--ATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRY 260
Score = 71 (30.1 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 121 VHRLGRGTSGILLCAKTKLAKTCIAGYFADKT 152
VHR+ R TSGILL AK + A + F +KT
Sbjct: 142 VHRIDRDTSGILLVAKKRSALRHLQAQFREKT 173
Score = 51 (23.0 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 299 YLHAYQLFLSHPTTNEVIKITAPLPSVLK 327
+LHA + HP + + ++I APL + L+
Sbjct: 278 FLHAANIQFVHPASEKKLEIHAPLEAHLE 306
>DICTYBASE|DDB_G0281097 [details] [associations]
symbol:DDB_G0281097 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
dictyBase:DDB_G0281097 EMBL:AAFI02000040 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 KO:K15454 RefSeq:XP_640817.1
ProteinModelPortal:Q54UF9 STRING:Q54UF9 EnsemblProtists:DDB0238343
GeneID:8622871 KEGG:ddi:DDB_G0281097 OMA:FAKERWF Uniprot:Q54UF9
Length = 578
Score = 188 (71.2 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 78/301 (25%), Positives = 135/301 (44%)
Query: 2 TLIEFYSTKHK-NSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPD 60
++++ +S + NS + +L++I+ G I V+ ++V+ P+ + ++ H + EP
Sbjct: 179 SILDMFSQEFSTNSRDV--YLKKIKRGLIKVNDQLVS-PSYKIKLNDTII-HTVHRHEPP 234
Query: 61 VPXXXXXXXXXXXXIAL-NKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPV 119
V + + +KPS + V P G F+ +++ L
Sbjct: 235 VTGESIKIVSLDENVVVVDKPSSIPVHPCGRFRHNSLMYIL---------ASEHGINQLY 285
Query: 120 PVHRLGRGTSGILLCAKT-----KLAKTCIAGYFADK--TSVIDA--DSTVMELSQRKIT 170
VHRL R TSG+LL A+T K A +G + + VI S + S
Sbjct: 286 GVHRLDRLTSGLLLLARTPDSANKKANQIQSGLVSKQYLAKVIGKFPGSDTINSSSSSFN 345
Query: 171 KIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCT 230
+ + H +++ II QPI I + G+ GKP+++ + + D N +
Sbjct: 346 EQIKLCKH--LEDGTFIIDQPIVI---QSMRLGINHVGVGGKPSITHIKLFSYDQSTNTS 400
Query: 231 LVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFA-----QDGGY 285
+V ++GR HQIR+HL +LG P+ DPLY +SF + +DG + DGG
Sbjct: 401 IVLCTPKTGRTHQIRVHLKWLGFPIANDPLY-NNEFKESFKALTSDGKTSYIFDDDDGGG 459
Query: 286 E 286
E
Sbjct: 460 E 460
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 175 (66.7 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 64/216 (29%), Positives = 98/216 (45%)
Query: 118 PVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALV 177
P VHRL +GT+G+L+ AK + + +A F T I ++Y +L
Sbjct: 227 PGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT----------------IERVYVSLT 270
Query: 178 HGIVDEDKVIIKQPIGI-----VRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLV 232
G+ + I+ PIG +R + G V + A S+ V+E LV
Sbjct: 271 TGVPSPPQGRIEIPIGRDSSNRIRMAAIPGG--VRGGRARHAASRYKVIETFAGGGSALV 328
Query: 233 QVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYE--RPVN 290
+ +++GR HQIR H ++G PLLGD +Y GG KS ++ E ++
Sbjct: 329 EWRLETGRTHQIRAHAKYMGVPLLGDEVY--GGT-KSMALSLLQKRVSRSDQEEIIELIS 385
Query: 291 PVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPSVL 326
+ C LHA L +HP T E++K + P PS L
Sbjct: 386 RMDRPC---LHAIVLGFTHPCTGEIVKFSCPPPSDL 418
Score = 49 (22.3 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 24 IQNGQITVDGRVVNDPNIILSAGSEL---VYHRLPWKEP--DVPXXXXXXXXXXXXIALN 78
I+ G +TV+GRVV+ + + +G E+ + P K D+P + +N
Sbjct: 104 IRLGLVTVNGRVVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHV--LVVN 161
Query: 79 KPSGLQVLP 87
KP+ + V P
Sbjct: 162 KPAHMVVHP 170
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 177 (67.4 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 53/180 (29%), Positives = 94/180 (52%)
Query: 144 IAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKG 203
+A A +T+++DA L R+IT+ Y A+ +G++ ++ +PIG R+ +
Sbjct: 148 VAKTIAAQTNLVDA------LQLREITREYEAVANGVMTAGG-LVDEPIG--RH-STKRT 197
Query: 204 LYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVA 263
S G+P+++ V+E+ R T +++ +++GR HQIR+H++ + HPL+GDP+Y
Sbjct: 198 QMAVSYIGRPSVTHYRVMEK--YRLHTRLRLRLETGRTHQIRVHMSHITHPLVGDPVY-- 253
Query: 264 GGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
GG+P+ + + ++R LHA L L HP T E + A LP
Sbjct: 254 GGRPRP-PKNSTEALLMKLRSFKRQA----------LHAAMLSLFHPITGEEMTWHAELP 302
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 126 (49.4 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
+ +R+ K Y A V G + ++ P+ I +P K V +GKPA ++ +V+E
Sbjct: 86 QFREREPKKQYVARVWGHPSPAEGLVDLPL-ICDWPNRPKQK-VCYETGKPAQTEYEVVE 143
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVA 263
+V I +GR HQ+R+H+ LGHP+LGD Y +
Sbjct: 144 YAADNTARVVLKPI-TGRSHQLRVHMLALGHPILGDRFYAS 183
Score = 73 (30.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 75 IALNKPSGLQVLPGGLFQQR-TVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILL 133
+ +NKPSGL +PG L + + +V+ ++Q R VHRL TSG+++
Sbjct: 24 MVVNKPSGLLSVPGRLEEHKDSVMTRIQ-RDYPQAES----------VHRLDMATSGVIV 72
Query: 134 CAKTKLAKTCIAGYFADK 151
A TK A+ + F ++
Sbjct: 73 VALTKAAERELKRQFRER 90
Score = 40 (19.1 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 300 LHAYQLFLSHPTTNEVIKITAP 321
LHA L ++HP + AP
Sbjct: 195 LHAEMLTITHPAYGNSMTFKAP 216
>TIGR_CMR|CJE_0022 [details] [associations]
symbol:CJE_0022 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
HOGENOM:HOG000275921 RefSeq:YP_178049.1 ProteinModelPortal:Q5HXD6
STRING:Q5HXD6 GeneID:3230677 KEGG:cjr:CJE0022 PATRIC:20041733
OMA:DFAHARV ProtClustDB:CLSK872338
BioCyc:CJEJ195099:GJC0-21-MONOMER Uniprot:Q5HXD6
Length = 300
Score = 151 (58.2 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 164 LSQRKIT-KIYRALVHGIVDEDKVIIKQPIGIVR-YPGVAKGLYVASPSGKPALSKVDVL 221
L ++K+ K Y AL +G ++E+ II + I + + Y V + + GK A+++ ++L
Sbjct: 141 LFEKKLVQKEYLALANGKIEEN-FIIDKAINLAKNYDDVKTRMQICK-EGKQAITEFEIL 198
Query: 222 ERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
E + N TL+ + +GR HQIR+HL + H +LGDPLY
Sbjct: 199 EYFPKINATLLLCKPLTGRQHQIRVHLHYKNHTILGDPLY 238
Score = 60 (26.2 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 122 HRLGRGTSGILLCAKTKLAKTCIAGYFADK 151
HRL + TSG++L AK K A+ + F K
Sbjct: 116 HRLDKETSGLILVAKNKKAQIDLKALFEKK 145
>UNIPROTKB|E1C0L7 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
OMA:MMLHAHL EMBL:AADN02023681 EMBL:AADN02023682 IPI:IPI00585704
Ensembl:ENSGALT00000008518 Uniprot:E1C0L7
Length = 254
Score = 146 (56.5 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S R +TK Y ALV G VD+ ++ I+ IG G+ + + G K
Sbjct: 82 AGSAYKCFKDRLVTKAYLALVRGHVDQSRMTIRYAIGKNTVEGMTHMMCIEGTEGCENPK 141
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY 261
P S++ VLE + +V +Q +GR HQ+R+H + +GHP++GD Y
Sbjct: 142 PCQSELIVLEHGSYSGDPVTKVLLQPLTGRTHQLRVHCSAIGHPIVGDFTY 192
Score = 61 (26.5 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 295 DCGYY---LHAYQLFLSHPTTNEVIKITAPLPSVLKTREEGREVDKSV 339
D G Y LHAY +L PT+ E+I++ AP P V T +G V + V
Sbjct: 197 DSGPYRMMLHAY--YLRIPTSKELIEVCAPDPFV--TALDGNWVPQRV 240
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 142 (55.0 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 38/120 (31%), Positives = 70/120 (58%)
Query: 158 DSTVMELSQRKIT-KIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALS 216
+S + + Q ++T KIY A V G++++++ + P+ +P K V G+ +L+
Sbjct: 80 ESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPL-CCDWPNRPKQK-VCFEEGRDSLT 137
Query: 217 KVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFAD 276
+ V++R+ T+V++ +GR HQ+R+H+ LGHP++GD LY P++ EFAD
Sbjct: 138 RYQVVKRE--EKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAP---PEAV--EFAD 190
Score = 59 (25.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/74 (31%), Positives = 31/74 (41%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
IA NKPSGL +PG + + W VHRL TSG++L
Sbjct: 24 IAANKPSGLLSVPGRPVEHYDSM----WARLVDYCPDVKV------VHRLDMSTSGLILF 73
Query: 135 AKTKLAKTCIAGYF 148
AK K ++ + F
Sbjct: 74 AKGKHMESALKKQF 87
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 142 (55.0 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 38/120 (31%), Positives = 70/120 (58%)
Query: 158 DSTVMELSQRKIT-KIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALS 216
+S + + Q ++T KIY A V G++++++ + P+ +P K V G+ +L+
Sbjct: 80 ESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPL-CCDWPNRPKQK-VCFEEGRDSLT 137
Query: 217 KVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFAD 276
+ V++R+ T+V++ +GR HQ+R+H+ LGHP++GD LY P++ EFAD
Sbjct: 138 RYQVVKRE--EKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAP---PEAV--EFAD 190
Score = 59 (25.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/74 (31%), Positives = 31/74 (41%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
IA NKPSGL +PG + + W VHRL TSG++L
Sbjct: 24 IAANKPSGLLSVPGRPVEHYDSM----WARLVDYCPDVKV------VHRLDMSTSGLILF 73
Query: 135 AKTKLAKTCIAGYF 148
AK K ++ + F
Sbjct: 74 AKGKHMESALKKQF 87
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 136 (52.9 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 44/163 (26%), Positives = 83/163 (50%)
Query: 164 LSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVAS-P-SGKPALSKVDVL 221
L +++I K Y A+V G+ + IK I + P + + V P GK A+++
Sbjct: 178 LLKKQIKKEYLAVVWGLPNPKSNTIKNYICVK--PNNKQMMTVTHLPHKGKLAITEYQT- 234
Query: 222 ERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFAQ 281
++ +L++ I +GR HQIR+H++++G+ ++GD Y G+ S ++A +
Sbjct: 235 QKSFSNIASLIKCRIHTGRTHQIRVHMSYIGNSIIGDQKY---GKNNSKSVKYAKQSTI- 290
Query: 282 DGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPS 324
+N + LHAY+L +HPT+N I+ + +P+
Sbjct: 291 -------INTLKRQA---LHAYKLGFTHPTSNTYIEFHSYIPN 323
Score = 74 (31.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
I +NK G+ V PG T++N L P +HRL + TSG+++
Sbjct: 106 IIINKAPGITVHPGAGTNNNTLVNALV-AHYGNSLSHVGKATRPGIIHRLDKDTSGLMVI 164
Query: 135 AKTK 138
AK +
Sbjct: 165 AKNE 168
>WB|WBGene00019498 [details] [associations]
symbol:K07E8.7 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:FO081602 PIR:T32044 RefSeq:NP_493778.1
ProteinModelPortal:O16686 SMR:O16686 STRING:O16686 PaxDb:O16686
EnsemblMetazoa:K07E8.7 GeneID:173456 KEGG:cel:CELE_K07E8.7
UCSC:K07E8.7 CTD:173456 WormBase:K07E8.7 HOGENOM:HOG000155606
InParanoid:O16686 NextBio:879741 Uniprot:O16686
Length = 432
Score = 169 (64.5 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 55/181 (30%), Positives = 93/181 (51%)
Query: 123 RLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVD 182
R+ G +G+ + + A + + + + + ++ +T L Q + +K Y V G+
Sbjct: 184 RVNEGRTGLRVLHRLDRATSGVLLFAKNYETDLEFKTT---LKQGEWSKEYICKVDGVFP 240
Query: 183 EDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPH 242
+++ + +QPIG + ++ G+ P GK A S+ L D ++ +VQV I++GR H
Sbjct: 241 DEEQVCEQPIGPLV---ISMGIQCVRPDGKDAKSRFRKLWSDGTQS--VVQVHIETGRTH 295
Query: 243 QIRIHLAFLGHPLLGDPLY---VAG---GQ----PKSFDSEFAD--GTFAQDGGYERPVN 290
QIR+H FLGHP+ GD +Y V G G+ KSFD D T + +E+P N
Sbjct: 296 QIRVHSQFLGHPIAGDQIYNSAVWGPTKGKNADYQKSFDELCEDVRNTHKCENWHEKP-N 354
Query: 291 P 291
P
Sbjct: 355 P 355
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 106 (42.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 34/111 (30%), Positives = 54/111 (48%)
Query: 169 ITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGL--YVASPSGKPALSKVDVLERDVQ 226
I K Y AL+ + I+ P+ V G K + K A+++ VLE +
Sbjct: 559 IKKTYWALLGSTPTPKEGRIRAPLKKVVVGGFEKVVPTLTTGDGAKIAITEYKVLESSLT 618
Query: 227 RNCTLVQVEIQSGRPHQIRIHLA-FLGHPLLGDPLYVAGGQPKSFDSEFAD 276
++C + + ++GR HQ+R+H A L P++GDP Y G +S DS D
Sbjct: 619 KHC-FISLWPETGRTHQLRVHCASVLNTPIIGDPKY---GDKES-DSNLKD 664
Score = 82 (33.9 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 75 IALNKPSGLQVLPG-GLFQQRTV-LNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGIL 132
I LNKP GL V G GL + + L+ L++ +P VHRL R TSGIL
Sbjct: 438 IVLNKPQGLSVQGGTGLNKHLDMMLSHLRFEKDE----------NPKLVHRLDRNTSGIL 487
Query: 133 LCAKTKLAKTCIAGYF 148
+ ++KLA + + F
Sbjct: 488 ILGRSKLAASAMTKKF 503
Score = 68 (29.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 299 YLHAYQLFLSHPTTNEVIKITAPLPSVL 326
+LHA ++ HP TN+ I I+APLP L
Sbjct: 673 HLHARRIEFIHPFTNKKIDISAPLPREL 700
>TIGR_CMR|CPS_3649 [details] [associations]
symbol:CPS_3649 "tRNA pseudouridine synthase C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 HOGENOM:HOG000275920
KO:K06175 RefSeq:YP_270317.1 ProteinModelPortal:Q47Y03
STRING:Q47Y03 GeneID:3523321 KEGG:cps:CPS_3649 PATRIC:21470223
OMA:EIANAVC BioCyc:CPSY167879:GI48-3671-MONOMER Uniprot:Q47Y03
Length = 304
Score = 101 (40.6 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 44/152 (28%), Positives = 74/152 (48%)
Query: 87 PGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAG 146
P GLF R+ +++ + + PVHRL R TSG+LL A TK T ++
Sbjct: 36 PAGLFVHRSYMDKDEI-YFALQLVRDQVGQYVYPVHRLDRPTSGVLLFALTKDVATKLSE 94
Query: 147 YFADKTSVIDADS-TVMELSQRKITKI----YRALVHGIVDEDKVIIKQPIGIVR-YPGV 200
FA+K+S + S T +E T+ +++ G+ DK I + +V+ Y +
Sbjct: 95 AFANKSSQAEFKSDTELEGKVHDKTQTGQQGQQSMTEGLTT-DKNIDGSDLAMVKTYYAL 153
Query: 201 AKGLYVASPSG---KPALSKVDVL-ERDVQRN 228
A+G ++A P P K+D L +++V R+
Sbjct: 154 ARG-HLAVPVDLIDHPLKEKLDKLGDKNVSRD 184
Score = 90 (36.7 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 230 TLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEF 274
+L++V +GR HQIR HLA L HP+LGD Y Q F F
Sbjct: 215 SLIEVRPITGRRHQIRRHLAHLRHPILGDINYGDNKQNPFFIEHF 259
Score = 49 (22.3 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 300 LHAYQLFLSHPTTNEVIKITAP 321
L A L +HP N+ IKI+AP
Sbjct: 266 LIAKSLEFNHPINNDRIKISAP 287
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 154 (59.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 40/122 (32%), Positives = 65/122 (53%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S +R++TK Y AL+ G + E +V I IG G A + + G K
Sbjct: 83 AGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNSTEGRAHTMCIEGSQGCENPK 142
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY--VAGGQPK 268
P+L+ + VLE + + +V ++ +GR HQ+R+H + LGHP++GD Y V+G + +
Sbjct: 143 PSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDR 202
Query: 269 SF 270
F
Sbjct: 203 PF 204
Score = 42 (19.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLP 323
LHA+ +L PT E +++ P P
Sbjct: 208 LHAF--YLRIPTDTECVEVCTPDP 229
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 157 (60.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 158 DSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSK 217
+S + + ++Y ALV+G EDK I+ IG R+P K + A+ GK A++
Sbjct: 159 ESLSRQFHDHTVKRVYLALVYGSPREDKGRIEGAIG--RHPTDRKKMSGAARHGKHAVTH 216
Query: 218 VDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADG 277
V R TL+++ +++GR HQIR+H+A G PL+GD +Y G+ +
Sbjct: 217 WRVAARFT--GVTLLRLRLETGRTHQIRVHMAEAGFPLVGDEVYGGAGRINNL------- 267
Query: 278 TFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLP 323
+D + + + LHA L HP T E ++ LP
Sbjct: 268 ---RDPVLRKLIRELGRQA---LHAKTLGFVHPVTGEYLEFDTELP 307
Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
Identities = 49/177 (27%), Positives = 76/177 (42%)
Query: 22 QR-IQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPXXXXX----XXXXXXXIA 76
QR I+ G++TVD R+ P++ L G +V +P P VP +
Sbjct: 38 QRLIEEGRVTVDDRL-EKPSLKLRGGERVVV-TVPPPAPAVPEAEEIPLVVLHEDGDVVV 95
Query: 77 LNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAK 136
++KP+G+ V P T++N L P VHR+ + TSG+L+ AK
Sbjct: 96 VDKPAGMVVHPAAGNPGGTLVNALL--AHCTDLSGIGGEIRPGIVHRIDKDTSGVLVVAK 153
Query: 137 TKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIG 193
+ A ++ F D T + ++Y ALV+G EDK I+ IG
Sbjct: 154 SDRAHESLSRQFHDHT----------------VKRVYLALVYGSPREDKGRIEGAIG 194
>RGD|1306147 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain containing 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
RGD:1306147 GO:GO:0003723 EMBL:CH473949 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
CTD:27079 OMA:HLNEEPV OrthoDB:EOG4DV5KW IPI:IPI00914730
RefSeq:NP_001129317.1 RefSeq:XP_003749602.1 UniGene:Rn.23750
Ensembl:ENSRNOT00000014129 GeneID:100911166 GeneID:311326
KEGG:rno:100911166 KEGG:rno:311326 UCSC:RGD:1306147 NextBio:663325
Uniprot:D4ACD4
Length = 553
Score = 161 (61.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 43/116 (37%), Positives = 64/116 (55%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYV 206
FA KT+ + ++ ++ R++ K Y V G + +VI K+PI +V Y GV +
Sbjct: 296 FA-KTAAV-SEKIHEQVRDRQLEKEYVCRVAGEFPDKEVICKEPILVVSYKVGVCR---- 349
Query: 207 ASPSGKPALSKVDVLER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
P GKP + V +R ++VQ +GR HQIR+HL FLGHP+L DP+Y
Sbjct: 350 VDPQGKPCET---VFQRLSYNGRSSVVQCRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 122 (48.0 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVA-KGLYVASPS--GKPALSK-V 218
+L+ + + +IY AL+ + EDK+I+++ ++R P A K + + + K A S +
Sbjct: 157 QLADKSMGRIYLALIDLPLKEDKIIVEK--FLMRSPSNAIKKIAIDKENKFSKNAKSAFI 214
Query: 219 DVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQ 266
+V++ + N TL+ ++ +GR HQIR HLA L +LGD LY G+
Sbjct: 215 NVVKTE---NLTLMAAKLFTGRTHQIRAHLASLNRHILGDGLYGYNGK 259
Score = 76 (31.8 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 295 DCGYYLHAYQLFLSHPTTNEVIKITAPL 322
DC LHAY L+ HP T E I + APL
Sbjct: 261 DCRIMLHAYFLYFIHPKTKEQIFVKAPL 288
>MGI|MGI:1918066 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain
containing 2" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1918066 GO:GO:0003723
EMBL:AL772264 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 HOGENOM:HOG000167783
GeneTree:ENSGT00420000029802 CTD:27079 HOVERGEN:HBG103625
OMA:HLNEEPV OrthoDB:EOG4DV5KW EMBL:AK044767 EMBL:BC117827
EMBL:BC117828 IPI:IPI00120035 RefSeq:NP_775626.1 UniGene:Mm.33617
ProteinModelPortal:Q149F1 SMR:Q149F1 STRING:Q149F1
PhosphoSite:Q149F1 PRIDE:Q149F1 Ensembl:ENSMUST00000028796
GeneID:271842 KEGG:mmu:271842 UCSC:uc008lsz.2 InParanoid:Q149F1
NextBio:393510 Bgee:Q149F1 CleanEx:MM_RPUSD2 Genevestigator:Q149F1
Uniprot:Q149F1
Length = 553
Score = 160 (61.4 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 43/116 (37%), Positives = 64/116 (55%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYV 206
FA KT+ + ++ ++ R++ K Y V G + +VI K+PI +V Y GV +
Sbjct: 296 FA-KTAAV-SEKIHEQVRDRQLEKEYVCRVAGEFPDKEVICKEPILVVSYKVGVCR---- 349
Query: 207 ASPSGKPALSKVDVLER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
P GKP + V +R ++VQ +GR HQIR+HL FLGHP+L DP+Y
Sbjct: 350 VDPRGKPCET---VFQRLSYNGRSSVVQCRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 119 VPVHRLGR----GTSGILLCAKTKLAKTC------IAGY-FADKTSVIDADSTVMELSQR 167
+PVH GR + I K K+ C +G F K+S A++ + ++ R
Sbjct: 189 IPVHPTGRYRYNTVTKIFEHEKGKIVHPCNRLDRLTSGLMFLGKSSK-GANNMMSQIRDR 247
Query: 168 KITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQR 227
+TK Y A V G D++I+ +P+ + P + + V +GK A ++ + D
Sbjct: 248 NVTKEYIARVKGEFPLDRIIVDKPLS-TKSPKLTLNV-VDMENGKEAKTEFQRVSYDPIT 305
Query: 228 NCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
N ++V+ +GR HQIR+HL FLG+P+ DP+Y
Sbjct: 306 NTSVVKCHPLTGRTHQIRVHLQFLGYPIANDPIY 339
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 134 (52.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 167 RKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----KPALSKVDVLE 222
R++TK Y ALV G V E+ + + IG G + G KP ++V VLE
Sbjct: 93 RRVTKAYLALVRGTVTEENLSLDFAIGKNTTEGKTHMMCTEGTEGCENPKPCQTEVTVLE 152
Query: 223 RDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY 261
+ +V +Q +GR HQ+R+H + +GHP++GD Y
Sbjct: 153 YGTYDGDQVTKVLLQPLTGRTHQLRVHCSAIGHPIVGDYTY 193
Score = 58 (25.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSV 325
LHAY FL P NE I +TAP P V
Sbjct: 206 LHAY--FLHIPLHNEPIHVTAPDPFV 229
>TIGR_CMR|CJE_0808 [details] [associations]
symbol:CJE_0808 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
RefSeq:YP_178812.1 ProteinModelPortal:Q5HV73 STRING:Q5HV73
GeneID:3230758 KEGG:cjr:CJE0808 PATRIC:20043361
HOGENOM:HOG000275921 OMA:YITSEEI ProtClustDB:CLSK872473
BioCyc:CJEJ195099:GJC0-823-MONOMER Uniprot:Q5HV73
Length = 250
Score = 137 (53.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 161 VMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDV 220
+ E + ++ K Y A++ G++ E+ V + +PI ++ G A L S G ALS +
Sbjct: 113 IEEFKKHRVYKSYIAVLDGVLAEE-VEVNEPIFTIKAKGGA--LSKVSKDGLSALSIITP 169
Query: 221 LERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+ +Q TL ++ IQ+GR HQIR+H F+ H ++GD Y
Sbjct: 170 IM--MQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKY 208
Score = 49 (22.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 121 VHRLGRGTSG-ILLCAKTKLAKTCI 144
++RL + TSG ILLC K CI
Sbjct: 89 LNRLDKETSGVILLCKDEDFRKLCI 113
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 149 (57.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 38/111 (34%), Positives = 58/111 (52%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S R++TK Y ALV G V E ++ I IG G + + G K
Sbjct: 83 AGSAYRCFKDRRVTKAYLALVRGHVQESRMTISYAIGKNSTEGRTHTMCIEGTQGCENPK 142
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY 261
P+L+++ VLE + + +V +Q +GR HQ+R+H + LGHP++GD Y
Sbjct: 143 PSLTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCSALGHPIVGDLTY 193
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSV 325
LHA+ +L PT+ E ++ P P V
Sbjct: 208 LHAF--YLRIPTSAECVEACTPDPFV 231
>UNIPROTKB|B4DDD1 [details] [associations]
symbol:RPUSD2 "cDNA FLJ57803, highly similar to Homo
sapiens RNA pseudouridylate synthase domain containing 2 (RPUSD2),
mRNA" species:9606 "Homo sapiens" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 UniGene:Hs.173311 HGNC:HGNC:24180
HOVERGEN:HBG103625 EMBL:AC091045 EMBL:AK293145 IPI:IPI00908891
SMR:B4DDD1 STRING:B4DDD1 Ensembl:ENST00000559271 UCSC:uc021sjh.1
Uniprot:B4DDD1
Length = 484
Score = 155 (59.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYV 206
FA KT+ + ++ ++ R++ K Y V G ++V K+PI +V Y GV +
Sbjct: 222 FA-KTAAV-SERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCR---- 275
Query: 207 ASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY--VAG 264
P GKP + L + Q + +V+ +GR HQIR+HL FLGHP+L DP+Y VA
Sbjct: 276 VDPRGKPCETVFQRLSYNGQSS--VVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNSVAW 333
Query: 265 G 265
G
Sbjct: 334 G 334
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 151 (58.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S R++TK Y ALV G + E +V I IG G + + G K
Sbjct: 83 AGSAYRCFKDRRVTKAYLALVRGHIQESRVTISYAIGKNSTEGRTHTMCIEGTQGCENPK 142
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY--VAGGQPK 268
P+L+++ VLE + + +V +Q +GR HQ+R+H + LGHP++GD Y +G + +
Sbjct: 143 PSLTELVVLEHGLYGGDPVSKVLLQPLTGRTHQLRVHCSALGHPIVGDLTYGQASGREDQ 202
Query: 269 SF 270
F
Sbjct: 203 PF 204
>UNIPROTKB|Q8IZ73 [details] [associations]
symbol:RPUSD2 "RNA pseudouridylate synthase
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 EMBL:AK055971 EMBL:BC007697
EMBL:BC016967 EMBL:U67934 IPI:IPI00150963 RefSeq:NP_689473.1
UniGene:Hs.173311 ProteinModelPortal:Q8IZ73 SMR:Q8IZ73
IntAct:Q8IZ73 STRING:Q8IZ73 PhosphoSite:Q8IZ73 DMDM:158563848
PaxDb:Q8IZ73 PeptideAtlas:Q8IZ73 PRIDE:Q8IZ73
Ensembl:ENST00000315616 GeneID:27079 KEGG:hsa:27079 UCSC:uc001zmd.1
CTD:27079 GeneCards:GC15P040861 HGNC:HGNC:24180 HPA:HPA042079
HPA:HPA042194 neXtProt:NX_Q8IZ73 PharmGKB:PA134866412
HOVERGEN:HBG103625 InParanoid:Q8IZ73 OMA:HLNEEPV OrthoDB:EOG4DV5KW
PhylomeDB:Q8IZ73 GenomeRNAi:27079 NextBio:49685 ArrayExpress:Q8IZ73
Bgee:Q8IZ73 CleanEx:HS_RPUSD2 Genevestigator:Q8IZ73 Uniprot:Q8IZ73
Length = 545
Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYV 206
FA KT+ + ++ ++ R++ K Y V G ++V K+PI +V Y GV +
Sbjct: 283 FA-KTAAV-SERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCR---- 336
Query: 207 ASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY--VAG 264
P GKP + L + Q + +V+ +GR HQIR+HL FLGHP+L DP+Y VA
Sbjct: 337 VDPRGKPCETVFQRLSYNGQSS--VVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNSVAW 394
Query: 265 G 265
G
Sbjct: 395 G 395
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 154 (59.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 57/194 (29%), Positives = 95/194 (48%)
Query: 75 IALNKPSGLQVLPG-GLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILL 133
I LNKP GL V G G+ +T +++L P VHRL R SG+L+
Sbjct: 193 IVLNKPHGLAVQGGSGI---KTSIDEL-----AASCLKFDKSESPRLVHRLDRDCSGLLV 244
Query: 134 CAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIG 193
A+T+ A T + F +KT+ A + ++ + + + + Y ALV G + I P+
Sbjct: 245 LARTQTAATVLHSIFREKTT--GASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLR 302
Query: 194 -IVRYPGVAKGLYVASP----SGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHL 248
+V G ++ + V S + A+++ V+E T +++ +GR HQ+R+H
Sbjct: 303 KVVVDDGKSERITVNDNGELVSTQHAITEYRVIESS-PHGYTWLELRPLTGRKHQLRVHC 361
Query: 249 A-FLGHPLLGDPLY 261
A LG P++GD Y
Sbjct: 362 AEVLGTPIVGDYKY 375
>UNIPROTKB|F1N088 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:DAAA02028551 IPI:IPI01002170 Ensembl:ENSBTAT00000004148
Uniprot:F1N088
Length = 552
Score = 154 (59.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYV 206
FA KT+ + ++ ++ R++ K Y V G ++V K+PI +V Y GV +
Sbjct: 290 FA-KTAAV-SERIHEQVRDRQLEKEYVCRVVGEFPTEEVTCKEPILVVSYKVGVCR---- 343
Query: 207 ASPSGKPALSKVDVLER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
P GKP S V +R + ++V+ +GR HQIR+HL FLGHP+L DP+Y
Sbjct: 344 VDPQGKPCES---VFQRLSYNGHSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 396
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 153 (58.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 75/272 (27%), Positives = 117/272 (43%)
Query: 3 LIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVP 62
L++ + ++ ++ P++ + + ++ G + V+ + V PN IL G EL+ H EP
Sbjct: 92 LVDVFESEFRDR-PIEYYRECMEKGSVLVNAKKVG-PNHILKNG-ELIAHICHRHEPPCT 148
Query: 63 XX-XXXXXXXXXXIALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPV 121
I +NKPSG+ V P G + +V+ ++ P
Sbjct: 149 ADPVQVLHEDDEMIVINKPSGMPVHPAGRYNFNSVVEVMR--------SERSRDFKAYPC 200
Query: 122 HRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIV 181
+RL R TSGI+ AKT A C G I + E R I + V I
Sbjct: 201 NRLDRLTSGIMFIAKTPQA-ACKMG------EQIMGRTVRKEYLARVIGRFPDGEV--IC 251
Query: 182 DEDKVIIKQPIGI--VRYPG-----VAKGL-YVASPSGKPALSKV-DVLERDVQRN---C 229
+E + I +G+ VR G V K L Y G+ +K + RN
Sbjct: 252 NEPILQISPKLGLNRVRANGRHARTVFKRLAYYPPAEGQGNEAKPGEAANGRPWRNKQGY 311
Query: 230 TLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
++V+ +GR HQIR+HL LGHP+ DP+Y
Sbjct: 312 SIVRCLPVTGRTHQIRVHLQHLGHPIENDPIY 343
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 148 (57.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S +R++TK Y ALV G V E ++ I IG G A + + G K
Sbjct: 83 AGSAYKCFKERRVTKAYLALVRGHVQESRMTINYAIGRNSTEGRAHTMCIEGTEGCENPK 142
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY 261
P+L+++ VLE + + +V +Q +GR HQ+R+H + L HP++GD Y
Sbjct: 143 PSLTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCSALSHPVVGDLTY 193
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 147 (56.8 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S +R++TK Y ALV G V E +V I IG G + + G K
Sbjct: 83 AGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEGRTHTMCIEGTHGCENPK 142
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY 261
P+L+++ VLE + + +V ++ +GR HQ+R+H + LGHP++GD Y
Sbjct: 143 PSLTELLVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPIVGDLTY 193
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 147 (56.8 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 157 ADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSG----K 212
A S +R++TK Y ALV G V E +V I IG G + + G K
Sbjct: 83 AGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEGRTHTMCIEGTHGCENPK 142
Query: 213 PALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY 261
P+L+++ VLE + + +V ++ +GR HQ+R+H + LGHP++GD Y
Sbjct: 143 PSLTELLVLEHGLYSGDPVSKVLLKPLTGRTHQLRVHCSALGHPIVGDLTY 193
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 146 (56.5 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 47/135 (34%), Positives = 69/135 (51%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
EL + ++ K+Y ALV G+ D + P+ V G ++ Y +P GK AL++ V+
Sbjct: 156 ELKEGRVEKVYWALVAGMPLADSWQVDAPVAKV---GTSR--YGVAPVGKAALTEFRVVA 210
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTF-AQ 281
R TLV+ ++GR HQIR+HLA G ++GD Y P+ TF A+
Sbjct: 211 RG--NGATLVEARPRTGRTHQIRVHLAHGGLSIIGDTTYGGIAAPRMM-LHCRTMTFRAE 267
Query: 282 DGGYERPVNPV-PGD 295
DG RPV+ P D
Sbjct: 268 DG---RPVSATAPPD 279
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 141 (54.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYVASPSGKPALSKVDVL 221
++ R++ K Y V G+ + V K+PI +V Y GV K S GK + L
Sbjct: 450 QIRNRQVEKEYICRVEGVFPDGIVECKEPIEVVSYKIGVCK----VSAKGKDCTTTFQKL 505
Query: 222 ERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
++ ++V + +GR HQIR+HL +LG+P+L DPLY
Sbjct: 506 SQN--GTTSVVLCKPLTGRMHQIRVHLQYLGYPILNDPLY 543
Score = 55 (24.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
+ +NKP+ + V P G ++ TV+ L +HRL R TSG+LL
Sbjct: 387 VVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKNLRT---------IHRLDRLTSGLLLF 437
Query: 135 AKT 137
++
Sbjct: 438 GRS 440
>ASPGD|ASPL0000068180 [details] [associations]
symbol:AN10936 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BN001304 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 OMA:GHPISND
EnsemblFungi:CADANIAT00000078 Uniprot:C8VCJ6
Length = 572
Score = 154 (59.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 68/278 (24%), Positives = 119/278 (42%)
Query: 3 LIEFYSTKHKNSAPLQGWLQR-IQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDV 61
LI+ ++++ ++ P G+ ++ +++G + V+G+ P+ +L G E++ H L EP V
Sbjct: 65 LIDIFTSEFRDREP--GYYKKALESGNVCVNGKPAG-PHTVLKNG-EVISHTLHRHEPPV 120
Query: 62 PXXXXXXXXXXXXI-ALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVP 120
+ ++KP+G+ V G + +V+ L+ + P P
Sbjct: 121 TGNEIGIIHETDDLLVIDKPAGVPVHSTGRYHYNSVMEILRIQNGGAYV--------PRP 172
Query: 121 VHRLGRGTSGILLCAKT---------KLA-----KTCIA---GYFADKTSVIDADSTVME 163
+RL R TSG++ KT KL K +A G F D V+ D +M
Sbjct: 173 CNRLDRLTSGVMFVGKTAQGADRMTVKLKERTVQKEYVARVKGRFPD--GVVVVDQPIMS 230
Query: 164 LSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLER 223
+S + + R G E K ++ + P + +PA +
Sbjct: 231 VSPK--VGLNRVRATG--KEAKTKFRR-LAYYPPPSPTTSTSDEGENARPATPPPSYVNE 285
Query: 224 DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
++V +GR HQIR+HL FLGHP+ DP+Y
Sbjct: 286 S--EGYSIVHCFPLTGRTHQIRVHLQFLGHPISNDPIY 321
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 291 PVPGDCGYYLHAYQLFLSHPTTNEVI 316
P+ G + + + FL HP +N+ I
Sbjct: 296 PLTGRT-HQIRVHLQFLGHPISNDPI 320
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 93 (37.8 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 211 GKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
GK A + L RD + LV + I SGR HQIR HL+ +GHP+ GD Y
Sbjct: 185 GKDAHTDFRTLARDTAVSFALV-IPI-SGRMHQIRKHLSAIGHPVRGDRRY 233
Score = 68 (29.0 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 297 GYYLHAYQLFLSHPTTNEVIKITAPLP 323
G+ LHA+++ L HP T + + APLP
Sbjct: 243 GHLLHAFRVALIHPVTGRKLIVHAPLP 269
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 120 PVHRLGRGTSGILLCAKTKLAKTCIAGYFADK 151
PV+RL RGTSG + AK+ + + Y ++
Sbjct: 128 PVNRLDRGTSGATILAKSSSSAGMLGRYVKEE 159
>UNIPROTKB|F1PK69 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AAEX03016068
Ensembl:ENSCAFT00000014582 Uniprot:F1PK69
Length = 552
Score = 146 (56.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 43/122 (35%), Positives = 66/122 (54%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYV 206
FA KT+ + ++ ++ R++ K Y V G ++V K+PI +V Y GV +
Sbjct: 290 FA-KTAAV-SERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCR---- 343
Query: 207 ASPSGKPALSKVDVLER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY--VA 263
GKP + V +R + ++V+ +GR HQIR+HL FLGHP+L DP+Y VA
Sbjct: 344 VDTRGKPCET---VFQRLSYNGHSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNSVA 400
Query: 264 GG 265
G
Sbjct: 401 WG 402
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 126 (49.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 47/169 (27%), Positives = 85/169 (50%)
Query: 117 HPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMEL-SQRKITKIYRA 175
H P+HRL R TSG+L+ FA + + S VM + + ++ K Y A
Sbjct: 46 HVFPLHRLDRPTSGVLV--------------FALSSQIA---SEVMPMFANHEMEKTYHA 88
Query: 176 LVHGIVDEDKVI---IKQPIGIV--RYPGVAKGLYVASPSGKPALSKVDVL----ERDVQ 226
+V G ++E V+ +K+ + + ++ K A + +P L+KV++ +
Sbjct: 89 IVRGWIEEANVLDYPLKEELDKIADKFAKQDKEAQSAVTAYRP-LAKVELPIATGKFATT 147
Query: 227 RNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFA 275
R C L++++ ++GR HQ+R H+A L HP++GD + G + F F+
Sbjct: 148 RYC-LMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHGDGVHNRLFREHFS 195
Score = 46 (21.3 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSV 325
LHA +L HP T + + I A L V
Sbjct: 201 LHASELRFMHPYTQQPLVIRAGLDEV 226
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 126 (49.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 47/169 (27%), Positives = 85/169 (50%)
Query: 117 HPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMEL-SQRKITKIYRA 175
H P+HRL R TSG+L+ FA + + S VM + + ++ K Y A
Sbjct: 46 HVFPLHRLDRPTSGVLV--------------FALSSQIA---SEVMPMFANHEMEKTYHA 88
Query: 176 LVHGIVDEDKVI---IKQPIGIV--RYPGVAKGLYVASPSGKPALSKVDVL----ERDVQ 226
+V G ++E V+ +K+ + + ++ K A + +P L+KV++ +
Sbjct: 89 IVRGWIEEANVLDYPLKEELDKIADKFAKQDKEAQSAVTAYRP-LAKVELPIATGKFATT 147
Query: 227 RNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFA 275
R C L++++ ++GR HQ+R H+A L HP++GD + G + F F+
Sbjct: 148 RYC-LMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHGDGVHNRLFREHFS 195
Score = 46 (21.3 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSV 325
LHA +L HP T + + I A L V
Sbjct: 201 LHASELRFMHPYTQQPLVIRAGLDEV 226
>UNIPROTKB|O07166 [details] [associations]
symbol:Rv3300c "Pseudouridine synthase" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005886
GenomeReviews:AL123456_GR GO:GO:0003723 EMBL:BX842582
HOGENOM:HOG000275916 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K06177 EMBL:CP003248 PIR:F70533 RefSeq:NP_217817.1
RefSeq:YP_006516777.1 ProteinModelPortal:O07166 SMR:O07166
EnsemblBacteria:EBMYCT00000003755 GeneID:13318123 GeneID:887958
KEGG:mtu:Rv3300c KEGG:mtv:RVBD_3300c PATRIC:18155955
TubercuList:Rv3300c OMA:FFRMHEV ProtClustDB:CLSK792416
Uniprot:O07166
Length = 305
Score = 101 (40.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 212 KPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+P + + L + R+ L ++ +GR HQ+R+H+A LG P++GDPLY
Sbjct: 200 EPGVPNAETLVERIARD-GLYRLTPTTGRTHQLRVHMAALGIPIMGDPLY 248
Score = 79 (32.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 30/112 (26%), Positives = 47/112 (41%)
Query: 23 RIQNGQITVDGRVVNDPNIILSAGSEL-VYHRLPWKEPDVPXXXXXXXXXXXXIALNKPS 81
++ G++ D V D +L GS + +Y LP + P VP + ++KP
Sbjct: 43 KVLAGEVVDDDGAVVDSGTVLPPGSVVHLYRDLPDEVP-VPFDVPVLHQDADIVVVDKPH 101
Query: 82 GLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILL 133
L +P G +T L +L+ P HRL R T+G+LL
Sbjct: 102 FLATMPRGRHVAQTALVRLRRELGLPELS---------PAHRLDRLTAGVLL 144
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 118 (46.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 36/117 (30%), Positives = 63/117 (53%)
Query: 155 IDADSTVMEL-SQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKP 213
+DA + L S R + K Y A+V G + E K ++ I V + G +G+
Sbjct: 152 LDAARELWRLFSNRLVKKSYLAIVIGELKEKKGVVDCYINKVLFKGEEVMQCNNIGNGEH 211
Query: 214 ALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSF 270
A+++ V+++ +N +L+++ +GR HQIR +A +GHP+L D Y G+ K+F
Sbjct: 212 AITQFHVIKKF--KNTSLIELFPLTGRKHQIRSQMASIGHPVLNDGKY---GRRKAF 263
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 121 VHRLGRGTSGILLCAKT 137
VHRL + T+G+L+ AKT
Sbjct: 135 VHRLDKHTTGVLIFAKT 151
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLP 323
LHA ++ +VIK+TA LP
Sbjct: 274 LHACEI--EFELFGKVIKVTAELP 295
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 106 (42.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 167 RKITKIYRALVHGIVDEDKVIIKQPI-GIVRYPGVAKGLYVASPSGKPALSKVDVLERDV 225
R + K Y AL+ G + E + I+ P+ G + K V GKPAL+ + ++ V
Sbjct: 95 RAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQK---VCWQQGKPALTHWETVQ--V 149
Query: 226 QRNCTLVQVEIQSGRPHQIRIHLAF---LGHPLLGDPLY 261
++N T V + +GR HQ+R+H A L P++GD LY
Sbjct: 150 EQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 188
Score = 50 (22.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
+ +NKP+ +PG + +VL +L+ + +HRL TSG+L+
Sbjct: 28 VVVNKPAEFLSVPG-VHVHDSVLTRLKAQFTQAEGVFA--------LHRLDMSTSGLLVF 78
Query: 135 AKTKLAKTCIAGYFADK 151
A T+ A + F +
Sbjct: 79 ALTRRANKQLQKQFISR 95
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 299 YLHAYQLFLSHPTTNE 314
+LHA QL +HP T +
Sbjct: 196 FLHAEQLSFAHPYTKQ 211
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 106 (42.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 167 RKITKIYRALVHGIVDEDKVIIKQPI-GIVRYPGVAKGLYVASPSGKPALSKVDVLERDV 225
R + K Y AL+ G + E + I+ P+ G + K V GKPAL+ + ++ V
Sbjct: 95 RAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQK---VCWQQGKPALTHWETVQ--V 149
Query: 226 QRNCTLVQVEIQSGRPHQIRIHLAF---LGHPLLGDPLY 261
++N T V + +GR HQ+R+H A L P++GD LY
Sbjct: 150 EQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 188
Score = 50 (22.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
+ +NKP+ +PG + +VL +L+ + +HRL TSG+L+
Sbjct: 28 VVVNKPAEFLSVPG-VHVHDSVLTRLKAQFTQAEGVFA--------LHRLDMSTSGLLVF 78
Query: 135 AKTKLAKTCIAGYFADK 151
A T+ A + F +
Sbjct: 79 ALTRRANKQLQKQFISR 95
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 299 YLHAYQLFLSHPTTNE 314
+LHA QL +HP T +
Sbjct: 196 FLHAEQLSFAHPYTKQ 211
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 112 (44.5 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 27/98 (27%), Positives = 50/98 (51%)
Query: 164 LSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLER 223
L ++K K Y AL+ G+ I+ + + R + V GK A ++ ++E+
Sbjct: 165 LEEKKFRKEYLALIWGVPTTKHCFIQTNLDVKRSDKTM--MEVTLSRGKHANTEY-IIEK 221
Query: 224 DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+L + + +GR HQIR+H++ +GH ++GD Y
Sbjct: 222 TFGNVASLARCILHTGRTHQIRVHMSHIGHSVVGDQKY 259
Score = 59 (25.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
I ++K + V PG + T+ + L P +HRL + TSG+++
Sbjct: 93 IVIDKAPNIAVHPGHGTKNDTLAHALL-AHCGNALCAVGNSHRPGIIHRLDKDTSGLMVI 151
Query: 135 AKTKLAKTCIAGYFADK 151
AKT+ A ++ +K
Sbjct: 152 AKTEKAYLVLSQALEEK 168
Score = 37 (18.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 300 LHAYQLFLSHPTTNEVI 316
LHA L HP T E +
Sbjct: 282 LHACLLGFHHPCTGEYL 298
>UNIPROTKB|P0AA41 [details] [associations]
symbol:truC species:83333 "Escherichia coli K-12"
[GO:0006399 "tRNA metabolic process" evidence=IMP] [GO:0009451 "RNA
modification" evidence=IMP] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U29581
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0564 PIR:C65061 RefSeq:NP_417271.1 RefSeq:YP_490999.1
ProteinModelPortal:P0AA41 SMR:P0AA41
EnsemblBacteria:EBESCT00000002568 EnsemblBacteria:EBESCT00000016436
GeneID:12933253 GeneID:947242 KEGG:ecj:Y75_p2728 KEGG:eco:b2791
PATRIC:32120998 EchoBASE:EB2963 EcoGene:EG13171
HOGENOM:HOG000275920 KO:K06175 OMA:FHPIMGD ProtClustDB:PRK11112
BioCyc:EcoCyc:G7449-MONOMER BioCyc:ECOL316407:JW2762-MONOMER
BioCyc:MetaCyc:G7449-MONOMER Genevestigator:P0AA41 Uniprot:P0AA41
Length = 260
Score = 111 (44.1 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 46/151 (30%), Positives = 69/151 (45%)
Query: 117 HPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTVMELSQRKITKIYRAL 176
H HRL R TSG+LL + A +A F Q +I K Y A+
Sbjct: 46 HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQF----------------EQHQIQKRYHAI 89
Query: 177 VHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSK---VDVLERDVQ--RNCT- 230
V G + E+ V+ P+ + +A +PA++ + +E V R T
Sbjct: 90 VRGWLMEEAVL-DYPL-VEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTT 147
Query: 231 ---LVQVEIQSGRPHQIRIHLAFLGHPLLGD 258
LV++E ++GR HQ+R HLA L HP++GD
Sbjct: 148 RYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178
Score = 56 (24.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPL 322
LHA QL L+HP T E + I A L
Sbjct: 201 LHASQLSLTHPFTGEPLTIHAGL 223
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYVASPSGKPALSKVDVL 221
++ +R++ K Y V G E +V+ ++PI +V Y GV + P GK + +
Sbjct: 207 QVRERQLEKEYVCRVVGEFPEHEVVCEEPILVVSYKVGVCR----VDPKGKCCKT---IF 259
Query: 222 ER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+R ++V+ ++GR HQIR+HL +LG+P++ DP+Y
Sbjct: 260 QRLSYNGKSSVVKCLPRTGRTHQIRVHLQYLGYPIVNDPIY 300
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 56/196 (28%), Positives = 88/196 (44%)
Query: 75 IALNKPSGLQVLPGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLC 134
+ ++KPSG+ V P G F Q T+ L+ +P +RL + TSG+L+
Sbjct: 129 LVIDKPSGIPVHPTGQFYQNTITELLKLHGVDA-----------LPCYRLDKITSGLLIL 177
Query: 135 AKTKLAKTCIAGYFADKTSVIDADSTVMELSQRK--------ITKIYRALVHGIVDEDKV 186
AK + AG + S+ D + L++ K I A D KV
Sbjct: 178 AKNSQS----AGEI--QKSIRSRDMIKIYLARVKGRFPHSELILDNENAAETTFEDTSKV 231
Query: 187 IIKQ-PIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIR 245
++ PI + P + V + K A++K + + T+V + +GR HQIR
Sbjct: 232 TVEMTPIYSID-P--KRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIR 288
Query: 246 IHLAFLGHPLLGDPLY 261
IHLA LGHP++ D +Y
Sbjct: 289 IHLARLGHPIVNDSVY 304
>TAIR|locus:2037593 [details] [associations]
symbol:AT1G78910 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0003723 EMBL:AC005679
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
EMBL:AK176219 EMBL:BT015880 EMBL:BT020453 IPI:IPI00517933
IPI:IPI00929952 PIR:F96818 RefSeq:NP_178012.2 UniGene:At.45151
UniGene:At.50046 ProteinModelPortal:Q5XET6 SMR:Q5XET6 STRING:Q5XET6
PRIDE:Q5XET6 EnsemblPlants:AT1G78910.1 GeneID:844229
KEGG:ath:AT1G78910 TAIR:At1g78910 HOGENOM:HOG000242909
InParanoid:Q5XET6 OMA:LNKPPKV PhylomeDB:Q5XET6
ProtClustDB:CLSN2680811 Genevestigator:Q5XET6 Uniprot:Q5XET6
Length = 478
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 46/153 (30%), Positives = 76/153 (49%)
Query: 118 PVPVHRLGRGTSGILLCAKTKLAKTCIAGYFAD---KTSVIDADSTVMELSQRKITKIYR 174
P VHRL R TSG+L+ +TK + + F+D + S A + E ++ Y
Sbjct: 225 PRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQ----YW 280
Query: 175 ALVHGIVDEDKVIIKQPIG-IVRYPGVAKGLYVASPSG----KPALSKVDVLERDVQRNC 229
ALV G E + +I P+ ++ G + +A SG + A+++ VL + C
Sbjct: 281 ALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKIN-GC 339
Query: 230 TLVQVEIQSGRPHQIRIHLA-FLGHPLLGDPLY 261
+ V++ + R HQ+R+H A LG P++GD Y
Sbjct: 340 SWVELRPITSRKHQLRVHCAEALGTPIVGDYKY 372
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 92 (37.4 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 30/95 (31%), Positives = 43/95 (45%)
Query: 169 ITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKG--LYVASPSGKPALSKVDVLERDVQ 226
+ K Y ALV G +KQ + + G + + GK AL+ VL R
Sbjct: 174 VDKRYMALVRG---HWATAVKQVRAPLLKSNLRSGERMVEVNEEGKEALTVFKVLRR-FG 229
Query: 227 RNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
T+V+ + +GR HQIR+H GH + GD Y
Sbjct: 230 DFATMVEAKPVTGRTHQIRVHTLHAGHCIAGDSKY 264
Score = 56 (24.8 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 121 VHRLGRGTSGILLCAKTK 138
VHRL R TSG+L+ AK +
Sbjct: 142 VHRLDRDTSGLLMIAKKR 159
Score = 51 (23.0 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 282 DGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPSV-LKTRE 330
D + R + + G +LHAY L + P E +K+ AP+ + KT E
Sbjct: 266 DDDFTREIRELGGK-RLFLHAYMLTVPLPDGGE-LKLQAPVDEMWAKTVE 313
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 125 (49.1 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 148 FADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVA 207
F KT + AD ++ R++TK Y A V G V + +P+ V P VA V
Sbjct: 219 FLAKTP-LGADRMGDQMKAREVTKEYVARVKGEFPIGIVEVDKPVRSVN-PKVALNA-VC 275
Query: 208 SPSGKPALSKVDVLER-DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
S + A V +R ++V+ + +GR HQIR+HL +LG P+ DP+Y
Sbjct: 276 EMSDENAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQIRVHLQYLGFPIANDPIY 330
>UNIPROTKB|H3BSG4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000565377 Bgee:H3BSG4 Uniprot:H3BSG4
Length = 173
Score = 103 (41.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 212 KPALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY--VAGGQP 267
KP+L+ + VLE + + +V ++ +GR HQ+R+H + LGHP++GD Y V+G +
Sbjct: 13 KPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGRED 72
Query: 268 KSF 270
+ F
Sbjct: 73 RPF 75
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLP 323
LHA+ +L PT E +++ P P
Sbjct: 79 LHAF--YLRIPTDTECVEVCTPDP 100
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 36/113 (31%), Positives = 58/113 (51%)
Query: 149 ADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVAS 208
A K S + A T+ L+QRK+ K Y LV G + ++ P+ R + + V
Sbjct: 148 AKKRSTLVALHTL--LTQRKVIKQYLLLVKGQWQGGECRVEVPLKKNRLQSGERMVKVEK 205
Query: 209 PSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
GK A++ L+ + +L++ + +GR HQIR+H A LG+P+ GD Y
Sbjct: 206 -EGKSAVTVFRPLK--IFEQASLIEAKPLTGRTHQIRVHAAHLGYPIAGDEKY 255
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 162 MELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYP-GVAKGLYVASPSGKPALSKVDV 220
+++ R++ K Y V G + V + I +V Y GV K SP GK +
Sbjct: 288 LQIRTRQVQKEYVCRVEGRFPDGIVECNEKIDVVSYKIGVCK----VSPKGKDCKTTFKR 343
Query: 221 LERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+ +V + ++V + +GR HQIR+HL FLG+P+ DPLY
Sbjct: 344 IG-EVGSD-SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLY 382
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 90 (36.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 30/99 (30%), Positives = 49/99 (49%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
E R++ K Y AL GI D I I I ++ V + A++ VL+
Sbjct: 163 EFKNRRVEKKYLALTQGIPKNDIGQINHSI-IKNKRSLSLDK-VNDSYLQEAVTSFSVLK 220
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+ + L++++ +GR HQIRIHL+ +G ++GD Y
Sbjct: 221 K-LPYGIGLLELKPITGRKHQIRIHLSHIGCSIIGDKKY 258
Score = 52 (23.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 121 VHRLGRGTSGILLCAKTKLAKTCIAGYFADK 151
VHRL + TSGIL+ A+ I F ++
Sbjct: 137 VHRLDKDTSGILMLARNARISRLIMHEFKNR 167
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSVLK 327
LHAY FLS + I T P+PS +K
Sbjct: 272 LHAY--FLSINIGEKKIDFTVPVPSYMK 297
>UNIPROTKB|H3BMZ6 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000569601 Bgee:H3BMZ6 Uniprot:H3BMZ6
Length = 181
Score = 103 (41.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 212 KPALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY--VAGGQP 267
KP+L+ + VLE + + +V ++ +GR HQ+R+H + LGHP++GD Y V+G +
Sbjct: 16 KPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGRED 75
Query: 268 KSF 270
+ F
Sbjct: 76 RPF 78
Score = 42 (19.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLP 323
LHA+ +L PT E +++ P P
Sbjct: 82 LHAF--YLRIPTDTECVEVCTPDP 103
>UNIPROTKB|H3BQN8 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 EMBL:CH471112 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL031033 UniGene:Hs.101742
HGNC:HGNC:14173 SMR:H3BQN8 Ensembl:ENST00000567114 Uniprot:H3BQN8
Length = 183
Score = 103 (41.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 212 KPALSKVDVLERDVQRNCTLVQVEIQ--SGRPHQIRIHLAFLGHPLLGDPLY--VAGGQP 267
KP+L+ + VLE + + +V ++ +GR HQ+R+H + LGHP++GD Y V+G +
Sbjct: 13 KPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGRED 72
Query: 268 KSF 270
+ F
Sbjct: 73 RPF 75
Score = 42 (19.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLP 323
LHA+ +L PT E +++ P P
Sbjct: 79 LHAF--YLRIPTDTECVEVCTPDP 100
>TIGR_CMR|CPS_3679 [details] [associations]
symbol:CPS_3679 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177 RefSeq:YP_270347.1
ProteinModelPortal:Q47XX3 STRING:Q47XX3 GeneID:3519865
KEGG:cps:CPS_3679 PATRIC:21470283 HOGENOM:HOG000225813 OMA:DHTTINR
ProtClustDB:CLSK938158 BioCyc:CPSY167879:GI48-3701-MONOMER
Uniprot:Q47XX3
Length = 318
Score = 104 (41.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 211 GKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
GK A S L D + +L++V+I SGR HQIR+H A + P++GD L+
Sbjct: 215 GKKARSTFTCLAYDEMTDQSLIKVKIDSGRKHQIRLHAASIAMPVVGDRLH 265
Score = 52 (23.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 121 VHRLGRGTSGILLCAKTKLAKTCIAGYF 148
VHRL R +G+++ A +K A ++ F
Sbjct: 156 VHRLDRAATGLIIVAHSKSAARALSHMF 183
>TAIR|locus:2824464 [details] [associations]
symbol:AT1G56345 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 EMBL:AC058785 EMBL:AC069159
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 EMBL:BT010200 EMBL:AK228224 IPI:IPI00531084
PIR:D96605 RefSeq:NP_176031.2 UniGene:At.45959
ProteinModelPortal:Q7XA65 SMR:Q7XA65 IntAct:Q7XA65 STRING:Q7XA65
EnsemblPlants:AT1G56345.1 GeneID:842088 KEGG:ath:AT1G56345
TAIR:At1g56345 HOGENOM:HOG000275917 InParanoid:Q7XA65 OMA:GAWRVYA
PhylomeDB:Q7XA65 ProtClustDB:CLSN2680513 Genevestigator:Q7XA65
Uniprot:Q7XA65
Length = 322
Score = 77 (32.2 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 237 QSGRPHQIRIHLAFLGHPLLGDPLY 261
+SGR HQIR+H +LG P+ GD Y
Sbjct: 253 RSGRTHQIRLHCQYLGIPIRGDVKY 277
Score = 70 (29.7 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 297 GYYLHAYQLFLSHPTTNEVIKITAPLP 323
G+ LHA L L HP T + I I APLP
Sbjct: 290 GHELHAECLSLDHPVTGDSIVIRAPLP 316
Score = 44 (20.5 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 122 HRLGRGTSGILLCAKT-KLAKTCIAGYFADK 151
+RL R TSG+++ K+ K+A + + K
Sbjct: 117 NRLDRDTSGVMIITKSHKVAAKLVKAFTEHK 147
>DICTYBASE|DDB_G0280463 [details] [associations]
symbol:DDB_G0280463 "Ribosomal large subunit
pseudouridine synthase D" species:44689 "Dictyostelium discoideum"
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0280463 GO:GO:0003723 EMBL:AAFI02000036
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 RefSeq:XP_641190.1 ProteinModelPortal:Q54VB9
EnsemblProtists:DDB0205216 GeneID:8622571 KEGG:ddi:DDB_G0280463
InParanoid:Q54VB9 OMA:VHMASEN Uniprot:Q54VB9
Length = 746
Score = 93 (37.8 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 230 TLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
+L++V + +GR HQIR+H+A P++GDP+Y
Sbjct: 548 SLLEVTLHTGRSHQIRVHMASENIPIVGDPIY 579
Score = 55 (24.4 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 24/98 (24%), Positives = 39/98 (39%)
Query: 77 LNKPSGLQVLPGGLF------------QQRTVLNQLQWRXXXXXXXXXXXXXH-PVPVHR 123
+NKP+G+ V P L Q T++N L R P VHR
Sbjct: 205 INKPAGMLVHPTALTLGSNALVINKEDQTHTLVNALIHRYGGVENLSSVGGVERPGIVHR 264
Query: 124 LGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADSTV 161
L + T+G+++ A+ + F TS + +T+
Sbjct: 265 LDKDTAGMIIIARNNDVHQKLQTLFEKHTSTMITHTTI 302
Score = 52 (23.4 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 169 ITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
I+K Y +V G E I + I R+P + + +GK AL++ VL+
Sbjct: 329 ISKKYHCIVLGKPKEQHGFINKKIS--RHPADKNKMVIDQDNGKEALTEFKVLK 380
Score = 37 (18.1 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 300 LHAYQLFLSHPTTNEVIKITAPLPSVLK 327
L + L HP NE+ + + PS K
Sbjct: 593 LASMNLKFVHPILNEIKEFSIQYPSHFK 620
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 114 (45.2 bits), Expect = 0.00065, P = 0.00065
Identities = 55/208 (26%), Positives = 93/208 (44%)
Query: 122 HRLGRGTSGILLCAKTKLA----KTCIAGYFAD-KTSVIDADSTVMELSQRKITKIYRAL 176
H+L + T+G+L+ AKT+ A +T I + + K I V I I RA+
Sbjct: 143 HKLEKETTGVLILAKTEEAAEHVQTLIQSHKVEMKYLAITVGVPVPSEGVIDIPVIERAV 202
Query: 177 VHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEI 236
V G K+ + P+ V G A A+++ VL D C+LV+++
Sbjct: 203 V-GPQPHFKMALS-PLFKVNEDGDGVTRVRAHRQAHAAVTRYQVL--DNTSGCSLVELQP 258
Query: 237 QSGRPHQIRIHLAF-LGHPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGD 295
+G +Q+R+H+A L P+LGD Y K + +GT + G + +P
Sbjct: 259 LTGVKNQLRVHMALALTCPILGDHKY--SHWSKLAPQKLPEGTLRRLGLVQSKTRYLP-- 314
Query: 296 CGYYLHAYQLFLSHPTTNEVIKITAPLP 323
+LH+ ++ L + I ++ PLP
Sbjct: 315 --LHLHSRRIVLPGFKGHRDITVSCPLP 340
>TIGR_CMR|GSU_3160 [details] [associations]
symbol:GSU_3160 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275920 KO:K06175
OMA:FANHSIE RefSeq:NP_954201.1 ProteinModelPortal:Q747V5
GeneID:2686768 KEGG:gsu:GSU3160 PATRIC:22029179
ProtClustDB:CLSK763245 BioCyc:GSUL243231:GH27-3194-MONOMER
Uniprot:Q747V5
Length = 250
Score = 110 (43.8 bits), Expect = 0.00087, P = 0.00087
Identities = 48/200 (24%), Positives = 79/200 (39%)
Query: 87 PGGLFQQRTVLNQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAG 146
P GL R+ +++ + R PVHRL + TSG+L+ A +
Sbjct: 16 PAGLLVHRSPIDRHETRFALQEVRDLLGR-RVYPVHRLDKPTSGVLVFALDPATARSLGD 74
Query: 147 YFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYV 206
FA ++ K Y A+ GIV + +I + P G
Sbjct: 75 AFAGG----------------RVNKTYLAVTRGIVPPEGIIDHS---LSEEPDRLDGAKS 115
Query: 207 ASPSGKPA------LSKVD---VLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLG 257
+ + +PA L++ + V R +L ++ +GR HQ+R H+ + HP++G
Sbjct: 116 SPAAPQPAVTVFRRLAEAELPVVTGRYASSRYSLAELTPHTGRRHQLRRHMKHIFHPIIG 175
Query: 258 DPLYVAGGQPKSFDSEFADG 277
D Y G + F EF G
Sbjct: 176 DTTYGEGRHNRFFREEFGCG 195
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 90 (36.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 28/99 (28%), Positives = 43/99 (43%)
Query: 163 ELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222
+ + + K Y ALV G + + + + V + GK + ++ VLE
Sbjct: 209 QFRDKNVQKFYHALVKGHWPTKLTRVTDALKKNDLKSGERVVVVDNQLGKESETRFRVLE 268
Query: 223 RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLY 261
R R TLV+ +GR HQIR+H GH + D Y
Sbjct: 269 R--YRGATLVRAFPVTGRTHQIRVHCQTSGHSIAMDAKY 305
Score = 64 (27.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 299 YLHAYQLFLSHPTTNEVIKITAPLPSVLK 327
+LHA + +HP T + +KI APL + L+
Sbjct: 323 FLHAASIEFTHPNTEQRLKIEAPLEASLE 351
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 353 328 0.00088 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 76
No. of states in DFA: 612 (65 KB)
Total size of DFA: 217 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.24u 0.12s 24.36t Elapsed: 00:00:01
Total cpu time: 24.24u 0.13s 24.37t Elapsed: 00:00:01
Start: Sat May 11 02:05:11 2013 End: Sat May 11 02:05:12 2013