Query 037167
Match_columns 353
No_of_seqs 322 out of 1856
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 1.1E-63 3.7E-68 474.6 24.0 295 1-337 17-315 (325)
2 1v9k_A Ribosomal large subunit 100.0 3E-54 1E-58 390.1 25.6 223 66-335 3-226 (228)
3 2i82_A Ribosomal large subunit 100.0 2.6E-53 9.1E-58 381.1 22.0 204 65-323 12-216 (217)
4 1ksk_A Ribosomal small subunit 100.0 8.9E-48 3E-52 349.2 9.7 203 1-264 4-209 (234)
5 1vio_A Ribosomal small subunit 100.0 1.5E-46 5.2E-51 342.9 8.8 201 1-262 3-206 (243)
6 3dh3_A Ribosomal large subunit 100.0 9.9E-42 3.4E-46 316.9 11.0 203 1-264 7-209 (290)
7 2oml_A Ribosomal large subunit 100.0 1.4E-41 4.9E-46 298.6 4.2 167 66-264 5-172 (189)
8 2olw_A Ribosomal large subunit 100.0 1E-40 3.5E-45 298.8 4.3 156 64-264 31-200 (217)
9 2gml_A Ribosomal large subunit 100.0 1.3E-32 4.6E-37 247.1 5.0 142 71-262 13-154 (237)
10 2k6p_A Uncharacterized protein 98.5 9.9E-09 3.4E-13 78.6 -0.7 72 1-74 1-83 (92)
11 2vqe_D 30S ribosomal protein S 98.4 8.9E-08 3.1E-12 84.2 2.5 78 1-89 99-179 (209)
12 1p9k_A ORF, hypothetical prote 98.2 2.9E-07 1E-11 68.2 0.5 52 1-53 21-72 (79)
13 1dm9_A Hypothetical 15.5 KD pr 98.1 7.6E-06 2.6E-10 66.7 8.0 51 1-53 9-59 (133)
14 1c05_A Ribosomal protein S4 de 98.1 5E-06 1.7E-10 69.9 6.7 78 1-88 51-128 (159)
15 2cqj_A BRMS2, U3 small nucleol 98.0 4E-06 1.4E-10 60.6 3.6 49 2-51 9-59 (71)
16 3bbn_D Ribosomal protein S4; s 97.9 6.9E-06 2.3E-10 71.4 3.8 54 1-55 89-142 (201)
17 3r8n_D 30S ribosomal protein S 97.9 3.2E-06 1.1E-10 73.6 1.6 53 1-54 95-147 (205)
18 3hp7_A Hemolysin, putative; st 97.7 3.8E-05 1.3E-09 70.9 5.2 52 1-53 7-60 (291)
19 3j20_D 30S ribosomal protein S 97.6 2.9E-05 1E-09 66.1 3.8 51 1-52 103-155 (180)
20 2xzm_D Ribosomal protein S4 co 97.5 7.1E-05 2.4E-09 64.0 4.0 50 1-51 107-158 (181)
21 1r3e_A TRNA pseudouridine synt 97.2 0.00028 9.7E-09 65.0 5.1 70 72-178 3-72 (309)
22 2aus_C Pseudouridine synthase; 97.1 0.00042 1.4E-08 65.0 5.5 72 70-178 44-115 (334)
23 1k8w_A TRNA pseudouridine synt 97.1 0.0005 1.7E-08 63.9 6.0 70 72-178 25-94 (327)
24 1sgv_A TRNA pseudouridine synt 97.1 0.00036 1.2E-08 64.5 4.9 71 71-178 5-75 (316)
25 3j20_E 30S ribosomal protein S 97.1 0.00084 2.9E-08 59.5 7.0 69 2-77 44-112 (243)
26 2apo_A Probable tRNA pseudouri 97.1 0.00041 1.4E-08 65.4 5.0 73 69-178 63-135 (357)
27 3u5c_J 40S ribosomal protein S 97.1 0.00014 4.9E-09 62.5 1.7 50 1-51 107-158 (197)
28 3kbg_A 30S ribosomal protein S 97.1 0.00074 2.5E-08 58.6 6.1 50 2-51 9-58 (213)
29 3u28_A H/ACA ribonucleoprotein 97.0 0.00091 3.1E-08 63.7 6.2 73 69-178 56-128 (400)
30 3iz6_C 40S ribosomal protein S 95.4 7.5E-05 2.6E-09 64.2 -9.6 36 16-51 123-158 (195)
31 3iz6_D 40S ribosomal protein S 94.9 0.024 8.2E-07 50.7 4.6 71 1-78 42-112 (265)
32 2xzm_W 40S ribosomal protein S 94.9 0.043 1.5E-06 48.9 6.2 70 2-78 43-114 (260)
33 3u5c_E RP5, S7, YS6, 40S ribos 93.9 0.024 8.1E-07 50.6 2.4 51 2-52 43-93 (261)
34 1h3f_A Tyrosyl-tRNA synthetase 90.5 0.5 1.7E-05 45.7 7.1 45 2-47 370-414 (432)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 90.2 0.055 1.9E-06 52.2 0.0 47 2-49 354-400 (420)
36 2jan_A Tyrosyl-tRNA synthetase 89.7 0.27 9.1E-06 47.5 4.4 45 2-47 357-401 (432)
37 2ts1_A Tyrosyl-tRNA synthetase 85.1 0.17 5.9E-06 48.7 0.0 45 3-48 354-398 (419)
38 1fm0_D Molybdopterin convertin 83.2 2.2 7.5E-05 30.4 5.4 33 19-52 41-75 (81)
39 2ktl_A Tyrosyl-tRNA synthetase 81.6 1 3.5E-05 37.3 3.4 36 2-38 51-86 (164)
40 2hj1_A Hypothetical protein; s 72.2 1.7 5.8E-05 32.7 1.9 29 27-56 59-87 (97)
41 3fm8_A Kinesin-like protein KI 70.3 7.2 0.00025 30.6 5.3 24 27-51 90-113 (124)
42 3dwg_C 9.5 kDa culture filtrat 70.1 6 0.0002 29.0 4.6 26 28-53 60-88 (93)
43 2q5w_D Molybdopterin convertin 68.1 5.6 0.00019 27.9 3.9 24 28-52 48-71 (77)
44 1wv3_A Similar to DNA segregat 66.9 5 0.00017 35.3 4.2 41 25-77 133-174 (238)
45 3rpf_C Molybdopterin convertin 66.4 4.7 0.00016 28.3 3.2 28 25-52 41-68 (74)
46 3po0_A Small archaeal modifier 63.5 7.4 0.00025 28.2 3.9 24 28-52 60-83 (89)
47 4egx_A Kinesin-like protein KI 62.7 8.1 0.00028 32.5 4.5 25 26-51 139-163 (184)
48 1ryj_A Unknown; beta/alpha pro 58.6 12 0.00041 25.9 4.1 25 28-53 41-65 (70)
49 2k9x_A Tburm1, uncharacterized 57.7 8.5 0.00029 29.5 3.5 45 3-52 40-96 (110)
50 3hvz_A Uncharacterized protein 55.5 8.7 0.0003 27.5 3.0 24 29-53 44-67 (78)
51 1vjk_A Molybdopterin convertin 53.4 9.6 0.00033 28.3 3.1 24 28-52 69-92 (98)
52 1rws_A Hypothetical protein PF 53.0 4.7 0.00016 28.6 1.2 24 28-52 48-71 (77)
53 2k5p_A THis protein, thiamine- 52.5 7.5 0.00026 27.8 2.2 25 28-52 36-63 (78)
54 2cu3_A Unknown function protei 50.3 11 0.00038 25.5 2.8 26 28-53 31-59 (64)
55 1tyg_B YJBS; alpha beta barrel 50.0 13 0.00044 27.2 3.2 25 28-52 54-81 (87)
56 2kl0_A Putative thiamin biosyn 49.1 6.8 0.00023 27.6 1.5 25 28-52 32-59 (73)
57 4ejq_A Kinesin-like protein KI 46.9 17 0.00058 29.5 3.8 24 27-51 110-133 (154)
58 1wgk_A Riken cDNA 2900073H19 p 45.9 15 0.00051 28.3 3.2 46 3-52 48-102 (114)
59 2kmm_A Guanosine-3',5'-BIS(dip 45.1 16 0.00055 25.0 3.0 25 28-53 38-62 (73)
60 1f0z_A THis protein; ubiquitin 43.7 12 0.00042 25.4 2.1 26 28-53 33-61 (66)
61 2g1e_A Hypothetical protein TA 41.4 18 0.00061 25.9 2.9 25 28-52 57-84 (90)
62 3uv0_A Mutator 2, isoform B; F 39.5 6.9 0.00023 29.6 0.2 23 25-49 60-82 (102)
63 2l52_A Methanosarcina acetivor 36.9 18 0.00062 26.8 2.3 25 28-52 66-93 (99)
64 2l32_A Small archaeal modifier 36.1 14 0.00047 26.1 1.4 23 28-52 38-60 (74)
65 1wln_A Afadin; beta sandwich, 34.0 28 0.00094 26.7 3.0 24 27-51 80-103 (120)
66 3oug_A Aspartate 1-decarboxyla 33.2 29 0.00099 26.6 2.8 42 26-72 69-112 (114)
67 2qjl_A URM1, ubiquitin-related 33.0 32 0.0011 25.3 3.2 25 28-52 66-93 (99)
68 1vc3_B L-aspartate-alpha-decar 30.7 13 0.00045 27.7 0.5 44 26-73 42-87 (96)
69 4h87_A Kanadaptin; FHA domain 28.7 47 0.0016 25.9 3.5 23 28-51 95-119 (130)
70 3hx1_A SLR1951 protein; P74513 28.4 27 0.00092 27.3 2.1 23 27-51 82-104 (131)
71 2jqj_A DNA damage response pro 28.2 38 0.0013 27.1 3.0 25 27-51 87-111 (151)
72 3gqs_A Adenylate cyclase-like 27.1 28 0.00095 26.0 1.9 23 28-51 70-92 (106)
73 2lf6_A Effector protein hopab1 26.0 33 0.0011 25.3 1.9 23 320-342 52-74 (101)
74 1v8c_A MOAD related protein; r 23.9 50 0.0017 27.1 3.0 25 28-52 54-81 (168)
75 1uhe_A Aspartate 1-decarboxyla 22.7 13 0.00044 27.8 -0.8 23 26-52 40-62 (97)
76 3po8_A RV0020C protein, putati 22.4 54 0.0018 24.0 2.7 22 28-51 66-87 (100)
77 3tl8_B Effector protein hopab2 22.0 49 0.0017 24.9 2.3 24 319-342 68-91 (117)
78 2xt9_B Putative signal transdu 21.9 59 0.002 24.5 2.9 23 27-51 73-95 (115)
79 2lf3_A Effector protein hopab3 20.0 58 0.002 24.2 2.2 23 319-341 62-84 (107)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=1.1e-63 Score=474.64 Aligned_cols=295 Identities=28% Similarity=0.405 Sum_probs=189.7
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCC---CCCCCccEEEECCcEEEE
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEP---DVPYLLEVLYEDDDLIAL 77 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~---~~~~~~~Ilyed~~~ivv 77 (353)
|||.+||.+.+.. +||+.++++|++|+|+|||+++.++++.|++||.|.+...+..++ ..+.+++|+|||++++||
T Consensus 17 ~RLd~~L~~~~~~-~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed~~~lvv 95 (325)
T 1v9f_A 17 QRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIII 95 (325)
T ss_dssp ------------------------------------------------------------CCCCCCCCCEEEECSSEEEE
T ss_pred chHHHHHHhhccc-cCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeEEEECCCEEEE
Confidence 5889999988744 699999999999999999998668999999999998864332111 123357899999999999
Q ss_pred ECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhcccccccc
Q 037167 78 NKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDA 157 (353)
Q Consensus 78 nKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~g~~~~~~ 157 (353)
|||+||+||+++.....|+++.+..++..... ..++++|||||++||||||||+|+++++.|+++|.+
T Consensus 96 nKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~-----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~------- 163 (325)
T 1v9f_A 96 NKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQR------- 163 (325)
T ss_dssp EECSSCCSSCBTTBSSSSHHHHHHHHCGGGGG-----SGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHT-------
T ss_pred ECCCCCeEecCCCCCCccHHHHHHHHHHhcCC-----CCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHc-------
Confidence 99999999998777678999888755432111 246889999999999999999999999999999976
Q ss_pred chhhhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeCCCCCcceeEEEEEEEeCCCCeEEEEEEeC
Q 037167 158 DSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQ 237 (353)
Q Consensus 158 ~~~~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~~~~~~~~sll~~~l~ 237 (353)
+.|+|+|+|+|.|.+++ ++.|+.||++........+ + ..+|++|.|.|++++.. .+.|+++|+|.
T Consensus 164 ---------~~v~K~Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~~--v-~~~gk~a~t~~~vl~~~--~~~slv~~~l~ 228 (325)
T 1v9f_A 164 ---------REITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMA--V-HPMGKPAVTHYRIMEHF--RVHTRLRLRLE 228 (325)
T ss_dssp ---------TCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEE--E-CTTSBCCEEEEEEEEEC--SSEEEEEEEES
T ss_pred ---------CCeeEEEEEEEeCCCCC-CCEEeeeeeECCCCCEEEE--E-CCCCeeEEEEEEEeEEc--CCeEEEEEEEC
Confidence 68999999999999987 7899999988654333222 2 35799999999999986 36899999999
Q ss_pred CCchhHHHHHHHHcCCCeeCCcCCCCCCCCCCCCcccccccc-ccCCCCCCCCCCCCccccccccceeeeeecCCCCCEE
Q 037167 238 SGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTF-AQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVI 316 (353)
Q Consensus 238 TGR~HQIR~hla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~l~LHa~~l~f~hp~~~~~~ 316 (353)
||||||||+||+++||||+||.+||.... +.... ...+ .....+. +++|||++|+|.||.+|+.+
T Consensus 229 TGR~HQIRvhla~lG~PI~GD~~Yg~~~~--~~~~~--~~~~~~~~~~~~----------r~~LHA~~L~f~hP~~~~~~ 294 (325)
T 1v9f_A 229 TGRTHQIRVHMAHITHPLVGDPVYGGRPR--PPKGA--SEAFISTLRKFD----------RQALHATMLRLYHPISGIEM 294 (325)
T ss_dssp CCCTTHHHHHHHHTTCCBTTCTTTTCCCC--CCTTC--CHHHHHHHHHCC----------SCSEEEEEEEEECTTTCCEE
T ss_pred CCCcHHHHHHHHhCCCceeCChhhCCccc--ccccc--chhhhhhccCCc----------ChhhheeeeEeeCCCCCCEE
Confidence 99999999999999999999999995311 10000 0000 0000111 48999999999999999999
Q ss_pred EEEeCCchhHHHHHHhccccc
Q 037167 317 KITAPLPSVLKTREEGREVDK 337 (353)
Q Consensus 317 ~~~aplP~~f~~~~~~l~~~~ 337 (353)
.|+||+|.+|+.+++.|+.+.
T Consensus 295 ~~~aplp~~~~~~l~~l~~~~ 315 (325)
T 1v9f_A 295 EWHAPIPQDMVELIEVMRADF 315 (325)
T ss_dssp EEECCCCHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHhcccc
Confidence 999999999999999987643
No 2
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=3e-54 Score=390.11 Aligned_cols=223 Identities=33% Similarity=0.433 Sum_probs=181.5
Q ss_pred cEEEECCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHH
Q 037167 66 EVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 145 (353)
Q Consensus 66 ~Ilyed~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~ 145 (353)
+|+|||++|+|||||+|++||++.. ...++++.+...... ...+++|||||++||||||||+|+++++.|+
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~--------~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~ 73 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPE--------ARFLELVHRLDRDTSGVLLVAKKRSALRSLH 73 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTT--------CSCCEESSCCCTTCEEEEEEESSHHHHHHHH
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCC--------CCccceEecCCCCCeEEEEEEeCHHHHHHHH
Confidence 4999999999999999999998765 356787777543221 1457899999999999999999999999999
Q ss_pred HHhhccccccccchhhhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeCCCCCcceeEEEEEEEeC
Q 037167 146 GYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDV 225 (353)
Q Consensus 146 ~~f~~g~~~~~~~~~~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~~~~ 225 (353)
++|++ +.|+|+|+|+|.|.++++.+.|+.||.+.........+. ..++|++|.|.|++++..
T Consensus 74 ~~~~~----------------~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~-~~~~gk~a~t~~~vl~~~- 135 (228)
T 1v9k_A 74 EQLRE----------------KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR-VSQEGKPSETRFKVEERY- 135 (228)
T ss_dssp HHHHT----------------TCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEE-ECTTSBCCCEEEEEEEEC-
T ss_pred HHHHh----------------CCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEE-ECCCCcEEEEEEEEEEEc-
Confidence 99976 689999999999999988899999998764321111222 346789999999999986
Q ss_pred CCCeEEEEEEeCCCchhHHHHHHHHcCCCeeCCcCCCCCCCCCCCCccccccccc-cCCCCCCCCCCCCcccccccccee
Q 037167 226 QRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFA-QDGGYERPVNPVPGDCGYYLHAYQ 304 (353)
Q Consensus 226 ~~~~sll~~~l~TGR~HQIR~hla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~l~LHa~~ 304 (353)
.+.|+++|+|.|||+||||+||+++||||+||.+||.... +..+. ...+. .+++|||++
T Consensus 136 -~~~slv~~~l~TGR~HQIR~hla~lG~PI~gD~~YG~~~~---------~~~~~~~~~~~----------~r~~LHa~~ 195 (228)
T 1v9k_A 136 -AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF---------DRQLTEAGTGL----------NRLFLHAAA 195 (228)
T ss_dssp -SSEEEEEEEESSCCTTHHHHHHHHTTCCBTTCTTTSCHHH---------HHHHHHTTCCC----------CSCCEEEEE
T ss_pred -CCeEEEEEEECCCCchHHHHHHHHCCCcEecCcccCCccc---------cchhhcccCCC----------CChhhccce
Confidence 3689999999999999999999999999999999985210 00000 00011 248999999
Q ss_pred eeeecCCCCCEEEEEeCCchhHHHHHHhccc
Q 037167 305 LFLSHPTTNEVIKITAPLPSVLKTREEGREV 335 (353)
Q Consensus 305 l~f~hp~~~~~~~~~aplP~~f~~~~~~l~~ 335 (353)
|+|.||.|++.+.|+||+|++|+.+++.|+.
T Consensus 196 l~f~hP~t~~~~~~~aplp~~~~~~l~~l~~ 226 (228)
T 1v9k_A 196 LKFTHPGTGEVMRIEAPMDEGLKRCLQKMRN 226 (228)
T ss_dssp EEEECTTTCCEEEEECCCCHHHHHHHHHHHH
T ss_pred eEeeCCCCCCEEEEEeCCcHHHHHHHHHhhh
Confidence 9999999999999999999999999988753
No 3
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=2.6e-53 Score=381.10 Aligned_cols=204 Identities=32% Similarity=0.485 Sum_probs=172.0
Q ss_pred ccEEEECCcEEEEECCCCCccccCCC-CCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHH
Q 037167 65 LEVLYEDDDLIALNKPSGLQVLPGGL-FQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 143 (353)
Q Consensus 65 ~~Ilyed~~~ivvnKP~G~~~~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~ 143 (353)
++|+|||++++|||||+|++||++.. ....++++.+...+ ..+++|||||++||||||||||+++++.
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~-----------~~~~~vhRLD~~TSGlll~ak~~~~~~~ 80 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-----------PQAESVHRLDMATSGVIVVALTKAAERE 80 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC-----------TTCEESSCCCTTCEEEEEEESSHHHHHH
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC-----------CCCceeecCCCCCeEEEEEEeCHHHHHH
Confidence 67999999999999999999998754 45678888886543 2468999999999999999999999999
Q ss_pred HHHHhhccccccccchhhhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeCCCCCcceeEEEEEEE
Q 037167 144 IAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLER 223 (353)
Q Consensus 144 L~~~f~~g~~~~~~~~~~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~~ 223 (353)
|+++|.+ +.|+|+|+|+|.|.++++++.|+.|+.+...... ...+...+|+.|.|+|++++.
T Consensus 81 l~~~f~~----------------~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~--~~~v~~~~gk~a~t~~~vl~~ 142 (217)
T 2i82_A 81 LKRQFRE----------------REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP--KQKVCYETGKPAQTEYEVVEY 142 (217)
T ss_dssp HHHHHHT----------------TCSEEEEEEEEESCCSSSEEEEECCEEECGGGTT--CEEECTTTCBCCEEEEEEEEE
T ss_pred HHHHHHh----------------CCeeEEEEEEEecccCCCCcEEecceeecCCCCc--EEEEeCCCCcEEEEEEEEEEE
Confidence 9999976 6899999999999999888999999987532221 222334678999999999998
Q ss_pred eCCCCeEEEEEEeCCCchhHHHHHHHHcCCCeeCCcCCCCCCCCCCCCccccccccccCCCCCCCCCCCCccccccccce
Q 037167 224 DVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAY 303 (353)
Q Consensus 224 ~~~~~~sll~~~l~TGR~HQIR~hla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~LHa~ 303 (353)
.. .+.++++|+|.|||+||||+||+++||||+||.+||..... . .. .+++|||+
T Consensus 143 ~~-~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~~Yg~~~~~-------------~--~~----------~r~~LHa~ 196 (217)
T 2i82_A 143 AA-DNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR-------------A--MA----------PRLLLHAE 196 (217)
T ss_dssp ET-TTEEEEEEEESSCCTTHHHHHHHHTTCCBTTCTTTSCHHHH-------------H--TC----------SSCCEEEE
T ss_pred CC-CCeEEEEEEECCCCcHHHHHHHHHCCCcEECccccCCcccc-------------C--CC----------CCceeeee
Confidence 74 23799999999999999999999999999999999852100 0 00 14899999
Q ss_pred eeeeecCCCCCEEEEEeCCc
Q 037167 304 QLFLSHPTTNEVIKITAPLP 323 (353)
Q Consensus 304 ~l~f~hp~~~~~~~~~aplP 323 (353)
+|+|.||.+++.+.|+||+|
T Consensus 197 ~l~f~hP~~~~~~~~~ap~p 216 (217)
T 2i82_A 197 MLTITHPAYGNSMTFKAPAD 216 (217)
T ss_dssp EEEEECTTTCCEEEEECCCC
T ss_pred EeEEcCCCCCCEEEEEecCC
Confidence 99999999999999999998
No 4
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=8.9e-48 Score=349.23 Aligned_cols=203 Identities=23% Similarity=0.277 Sum_probs=163.4
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEE-CCcEEEEEC
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYE-DDDLIALNK 79 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilye-d~~~ivvnK 79 (353)
|||.+||.+.. . +||+.++++|++|+|+|||++++++++.|++||.|.+.. ..|+|| |++++||||
T Consensus 4 ~RLd~~L~~~~-~-~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~-----------~~i~~e~d~~~lvvnK 70 (234)
T 1ksk_A 4 MRLDKFIAQQL-G-VSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG-----------NPLAQQHGPRYFMLNK 70 (234)
T ss_dssp EEHHHHHHHHH-T-CCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT-----------EEECCCCCCCEEEEEE
T ss_pred ccHHHHHHHcC-C-CCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC-----------eEeecCCCCEEEEEEC
Confidence 58999998875 3 799999999999999999999977999999999998752 138999 999999999
Q ss_pred CCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhccccccccch
Q 037167 80 PSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADS 159 (353)
Q Consensus 80 P~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~g~~~~~~~~ 159 (353)
|+|++||+++.. ..|+.+.+...+. .++++|||||++||||||||+|+++++.|..
T Consensus 71 P~G~~~~~~~~~-~~tl~~~l~~~~~----------~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~------------- 126 (234)
T 1ksk_A 71 PQGYVCSTDDPD-HPTVLYFLDEPVA----------WKLHAAGRLDIDTTGLVLMTDDGQWSHRITS------------- 126 (234)
T ss_dssp CTTCBSSSSCSS-SCBGGGGCCCTTG----------GGCEESSCCCTTCEEEEEEESCHHHHHHHHC-------------
T ss_pred CCCCEeCCCCCC-CCcHHHHhhhhhc----------CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhC-------------
Confidence 999999998764 6788776643221 2578999999999999999999999887763
Q ss_pred hhhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeC--CCCCcceeEEEEEEEeCCCCeEEEEEEeC
Q 037167 160 TVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVAS--PSGKPALSKVDVLERDVQRNCTLVQVEIQ 237 (353)
Q Consensus 160 ~~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~--~~gk~a~t~~~vl~~~~~~~~sll~~~l~ 237 (353)
+.+.++|+|+|+|.|.++++. ++.+. .++.+.. ..+++|. +++++ .++++|+|.
T Consensus 127 -----~~~~v~K~Y~a~v~g~~~~~~--i~~~~---------~g~~~~~~~~~~~~a~--~~~~~------~s~~~~~l~ 182 (234)
T 1ksk_A 127 -----PRHHCEKTYLVTLESPVADDT--AEQFA---------KGVQLHNEKDLTKPAV--LEVIT------PTQVRLTIS 182 (234)
T ss_dssp -----TTSCCCEEEEEEESSCCCTTH--HHHHH---------HCCCCTTCSSCCCCCE--EEEEE------TTEEEEEES
T ss_pred -----CCCCCCeEEEEEEccCCCHHH--HHHHH---------CCeEECCCCcccceEE--EEEeC------CeEEEEEEc
Confidence 336899999999999987653 33221 1111111 1245543 66663 589999999
Q ss_pred CCchhHHHHHHHHcCCCeeCCcCCCCC
Q 037167 238 SGRPHQIRIHLAFLGHPLLGDPLYVAG 264 (353)
Q Consensus 238 TGR~HQIR~hla~lG~PIvGD~~Yg~~ 264 (353)
||||||||+||+++||||+||.+|+.+
T Consensus 183 tGR~HQIR~h~~~lG~pi~gd~ry~~g 209 (234)
T 1ksk_A 183 EGRYHQVKRMFAAVGNHVVELHRERIG 209 (234)
T ss_dssp CCCTTHHHHHHHHTTCCEEEEEEEEET
T ss_pred cCCCHHHHHHHHHcCCeEeeeEEEEEC
Confidence 999999999999999999999999754
No 5
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=1.5e-46 Score=342.85 Aligned_cols=201 Identities=19% Similarity=0.286 Sum_probs=159.4
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCc-EEEEEC
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDD-LIALNK 79 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~-~ivvnK 79 (353)
|||.+||.+.. . +||+.++++|++|+|+|||++++++++.|.+||.|.+.. ..|+|||++ |+||||
T Consensus 3 ~RLd~~L~~~~-~-~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~-----------~~i~~ed~~~~lvvnK 69 (243)
T 1vio_A 3 LRLDKFIAENV-G-LTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED-----------ELLTWIEEGQYFMLNK 69 (243)
T ss_dssp EEHHHHHHHHH-T-CCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT-----------EECCSSCCCCEEEEEE
T ss_pred ccHHHHHHHcC-C-CCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec-----------cccccCCCCEEEEEEC
Confidence 48999999875 3 799999999999999999999977999999999887742 248999999 999999
Q ss_pred CCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhccccccccch
Q 037167 80 PSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADS 159 (353)
Q Consensus 80 P~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~g~~~~~~~~ 159 (353)
|+|++||+++.. ..|+.+.|..... ..+++|||||++||||||||+|+++++.+..
T Consensus 70 P~G~~~~~~~~~-~~tl~~~l~~~~~----------~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~------------- 125 (243)
T 1vio_A 70 PQGCVCSNDDGD-YPTIYQFFDYPLA----------GKLHSAGRLDVDTTGLVLLTDDGQWSHRITS------------- 125 (243)
T ss_dssp CTTCBSSCCC---CCBGGGGSCTTGG----------GGCEESSCCCTTCEEEEEEESCHHHHHHHHC-------------
T ss_pred CCCCEeCCCCCC-CCcHHHHHhHHhc----------CCEeEccCCCCCCeEEEEEEECHHHHHHHhC-------------
Confidence 999999998764 6788776653221 2578999999999999999999998877652
Q ss_pred hhhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeC--CCCCcceeEEEEEEEeCCCCeEEEEEEeC
Q 037167 160 TVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVAS--PSGKPALSKVDVLERDVQRNCTLVQVEIQ 237 (353)
Q Consensus 160 ~~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~--~~gk~a~t~~~vl~~~~~~~~sll~~~l~ 237 (353)
+.+.|+|+|+|+|.|.++++. ++.+.. ++.+.. ..+++|. +++++ .++++|+|.
T Consensus 126 -----~~~~v~K~Y~a~v~g~~~~~~--i~~~~~---------g~~~~~~~~~~~~a~--~~~l~------~sl~~~~l~ 181 (243)
T 1vio_A 126 -----PKHHCEKTYLVTLADPVEENY--SAACAE---------GILLRGEKEPTKPAK--LEILD------DYNVNLTIS 181 (243)
T ss_dssp -----TTSCCCEEEEEEESSCCCTTH--HHHHHH---------CCCCTTCSSCCCCCE--EEECS------SSEEEEEES
T ss_pred -----CCCCCCEEEEEEEeCCCCHHH--HHHHhC---------CeEECCCCccceeEE--EEEeC------CEEEEEEEc
Confidence 336899999999999987653 333221 111111 1356654 45542 589999999
Q ss_pred CCchhHHHHHHHHcCCCeeCCcCCC
Q 037167 238 SGRPHQIRIHLAFLGHPLLGDPLYV 262 (353)
Q Consensus 238 TGR~HQIR~hla~lG~PIvGD~~Yg 262 (353)
||||||||+||+++||||+||..|.
T Consensus 182 tGR~HQIR~hl~~lG~pI~gd~r~~ 206 (243)
T 1vio_A 182 EGRYHQVKRMFAALGNKVVGLHRWK 206 (243)
T ss_dssp CCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred cCCcHHHHHHHHHCCCeEcccEEEE
Confidence 9999999999999999999999553
No 6
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=9.9e-42 Score=316.87 Aligned_cols=203 Identities=16% Similarity=0.146 Sum_probs=159.6
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCcEEEEECC
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDDLIALNKP 80 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivvnKP 80 (353)
|||.+||... .. +||+.++++|++|+|+|||+++ ++++.|.+||.|.++..+... ..|||++|+|||||
T Consensus 7 ~RLdk~La~~-g~-~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~--------~~~ed~~~lvvnKP 75 (290)
T 3dh3_A 7 VRLNKYISES-GI-CSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP--------REAEDLVLIALNKP 75 (290)
T ss_dssp EEHHHHHHTT-TS-SCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECC--------CCGGGCCEEEEEEC
T ss_pred hHHHHHHHhC-CC-CCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccc--------cccccceEEEEECC
Confidence 5788888886 33 7999999999999999999999 799999999999986432111 13799999999999
Q ss_pred CCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhccccccccchh
Q 037167 81 SGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADKTSVIDADST 160 (353)
Q Consensus 81 ~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~g~~~~~~~~~ 160 (353)
+|++||+.+.. ..|+++.+.. ..++++|||||++||||||||+|+++++.|...
T Consensus 76 ~G~~~~~~~~~-~~tl~~~l~~------------~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~------------- 129 (290)
T 3dh3_A 76 VGIVSTTEDGE-RDNIVDFVNH------------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA------------- 129 (290)
T ss_dssp TTCBCCCCSSC-TTBHHHHHTC------------SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCG-------------
T ss_pred CccccCCCCCC-CCcHHHHhhc------------cCceeeeccCCCCCcceEEEcCCHHHHHHHHHh-------------
Confidence 99999988755 6788887742 156899999999999999999999999988753
Q ss_pred hhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeCCCCCcceeEEEEEEEeCCCCeEEEEEEeCCCc
Q 037167 161 VMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGR 240 (353)
Q Consensus 161 ~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~~~~~~~~sll~~~l~TGR 240 (353)
.+.|+|+|+|+|.|.++++... . +..++.+ .++....+.++.+ +.++++|+|.|||
T Consensus 130 -----~~~v~K~Y~a~V~G~~~~~~i~--~---------l~~Gv~l--~~~~~~~~~v~~~------~~~~l~l~l~tGR 185 (290)
T 3dh3_A 130 -----GNDHEKEYLVTVDKPITEEFIR--G---------MSAGVPI--LGTVTKKCKVKKE------APFVFRITLVQGL 185 (290)
T ss_dssp -----GGCCCEEEEEEESSCCCHHHHH--H---------HHTCCBC--SSSBCCCCEEEEC------SSSEEEEEESCCC
T ss_pred -----hCCcCEEEEEEECCCCCHHHHH--H---------HhcCccc--CCcccceEEEEEc------CCeEEEEEEeCCC
Confidence 3689999999999998754321 0 1223322 1222223333322 4579999999999
Q ss_pred hhHHHHHHHHcCCCeeCCcCCCCC
Q 037167 241 PHQIRIHLAFLGHPLLGDPLYVAG 264 (353)
Q Consensus 241 ~HQIR~hla~lG~PIvGD~~Yg~~ 264 (353)
+||||+||+++||||+++..|.-+
T Consensus 186 ~HQIR~~~~~lG~pV~~L~R~~iG 209 (290)
T 3dh3_A 186 NRQIRRMCEHFGYEVKKLERTRIM 209 (290)
T ss_dssp TTHHHHHHHHTTCCEEEEEEEEET
T ss_pred ChHHHHHHHHcCCeEEEeEEEEEC
Confidence 999999999999999999988643
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=1.4e-41 Score=298.56 Aligned_cols=167 Identities=19% Similarity=0.237 Sum_probs=123.3
Q ss_pred cEEEECCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHH
Q 037167 66 EVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 145 (353)
Q Consensus 66 ~Ilyed~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~ 145 (353)
.|+|||++++|||||+||+||+++.....|+.+.+. ..++++|||||++||||||||+|+++++.|+
T Consensus 5 ~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-------------~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~ 71 (189)
T 2oml_A 5 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-------------VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 71 (189)
T ss_dssp ---CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-------------CSSCEESSCCCTTCEEEEEEESCHHHHHHHH
T ss_pred ccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-------------CCCceECCCCCCCCeeEEEEEcCHHHHHHHh
Confidence 599999999999999999999987766777765543 0357899999999999999999999999998
Q ss_pred HHhhccccccccchhhhhhccceEEEEEEEEEeeeeCCCc-eEEecceeeecCCCcccceEeeCCCCCcceeEEEEEEEe
Q 037167 146 GYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDK-VIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERD 224 (353)
Q Consensus 146 ~~f~~g~~~~~~~~~~~~~~~~~v~K~Y~alv~G~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~~~ 224 (353)
++ .+.|+|+|+|+|.|.++++. ..++.++...........+.........+.|.|+++...
T Consensus 72 ~~------------------~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~v~~~~ 133 (189)
T 2oml_A 72 QP------------------GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 133 (189)
T ss_dssp ST------------------TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSSCCC-CT
T ss_pred Cc------------------cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEeccccccccccccccccc
Confidence 75 25899999999999987654 234555542110000011111111112236777777653
Q ss_pred CCCCeEEEEEEeCCCchhHHHHHHHHcCCCeeCCcCCCCC
Q 037167 225 VQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAG 264 (353)
Q Consensus 225 ~~~~~sll~~~l~TGR~HQIR~hla~lG~PIvGD~~Yg~~ 264 (353)
. .+.|+++|+|.|||+||||+||+++||||+||.+||.+
T Consensus 134 ~-~~~slv~~~l~TGR~HQIRvhla~lG~PI~gD~~Y~~g 172 (189)
T 2oml_A 134 S-IPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 172 (189)
T ss_dssp T-SCEEEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEET
T ss_pred C-CCcEEEEEEEeeCCCHHHHHHHHHcCCcCcceEEEEEC
Confidence 1 36899999999999999999999999999999999854
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=100.00 E-value=1e-40 Score=298.83 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=115.7
Q ss_pred CccEEEECCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHH
Q 037167 64 LLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 143 (353)
Q Consensus 64 ~~~Ilyed~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~ 143 (353)
.+.|+|||++++|||||+|++||+++.....|+.+.+. ..++++|||||++||||||||+|+++++.
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-------------~~~~~~VhRLDr~TSGllllAk~~~~~~~ 97 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-------------VQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-------------CCSCEESSCCCTTCEEEEEEESCHHHHHH
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-------------cCCceECCCCCCCCeeEEEEEcCHHHHHH
Confidence 46799999999999999999999987766677766543 13578999999999999999999999999
Q ss_pred HHHHhhccccccccchhhhhhccceEEEEEEEEEeeeeCCCc-eEEecceeeecCCCcccceEeeCCCCCcceeEEEEEE
Q 037167 144 IAGYFADKTSVIDADSTVMELSQRKITKIYRALVHGIVDEDK-VIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLE 222 (353)
Q Consensus 144 L~~~f~~g~~~~~~~~~~~~~~~~~v~K~Y~alv~G~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~ 222 (353)
|++++ ++|+|+|+|+|.|.++++. ..++.++.. .+|+.+.+.++++.
T Consensus 98 L~~~~------------------~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~--------------~~g~~~~~~~~~~~ 145 (217)
T 2olw_A 98 LTQPG------------------KRTGKIYYVQVEGIPTQDALEALRNGVTL--------------NDGPTLPAGAELVD 145 (217)
T ss_dssp HHCTT------------------CCCCEEEEEEEESCCCHHHHHHHHHCCEE--------------TTEECCCCEEEEEC
T ss_pred HHccc------------------ccCCEEEEEEEccCCCHHHHHHHhCCEEe--------------CCCcccceEEEEec
Confidence 98652 5899999999999987654 234444421 11222222222221
Q ss_pred -------------EeCCCCeEEEEEEeCCCchhHHHHHHHHcCCCeeCCcCCCCC
Q 037167 223 -------------RDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAG 264 (353)
Q Consensus 223 -------------~~~~~~~sll~~~l~TGR~HQIR~hla~lG~PIvGD~~Yg~~ 264 (353)
.....+.|+++|+|.|||+||||+||+++||||+||.+||.+
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~slv~~~l~TGRtHQIRvhla~lG~PIvgD~rY~~g 200 (217)
T 2olw_A 146 EPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 200 (217)
T ss_dssp CCTTCCCCSSCCC-CCSSCEEEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEET
T ss_pred CCccccccccceeccCCCCcEEEEEEECcCCCHHHHHHHHHCCCcEeCCEEEEEC
Confidence 111136899999999999999999999999999999999854
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.97 E-value=1.3e-32 Score=247.14 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=111.8
Q ss_pred CCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhc
Q 037167 71 DDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFAD 150 (353)
Q Consensus 71 d~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~ 150 (353)
+++|||+|||+|++|++.+. ...|+++.+.. ..++++|||||++||||||||+|+++++.|...
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~------------~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p--- 76 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH------------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA--- 76 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC------------SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHH---
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc------------cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCc---
Confidence 34799999999999998765 46788876631 146899999999999999999999999999863
Q ss_pred cccccccchhhhhhccceEEEEEEEEEeeeeCCCceEEecceeeecCCCcccceEeeCCCCCcceeEEEEEEEeCCCCeE
Q 037167 151 KTSVIDADSTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCT 230 (353)
Q Consensus 151 g~~~~~~~~~~~~~~~~~v~K~Y~alv~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~gk~a~t~~~vl~~~~~~~~s 230 (353)
.+.|+|+|+|+|.|.++++.+. . +..++.+ .+++.+.+.++++. .+
T Consensus 77 ---------------~~~v~K~Y~a~V~G~~~~~~i~--~---------l~~Gv~l--~~~~~~~a~~~~l~------~s 122 (237)
T 2gml_A 77 ---------------GNDHEKEYLVTVDKPITEEFIR--G---------MSAGVPI--LGTVTKKCKVKKEA------PF 122 (237)
T ss_dssp ---------------HHHSCEEEEEEESSCCCHHHHH--H---------HSSCCEE--TTEECCCCEEEEEE------TT
T ss_pred ---------------cCCCCEEEEEEEcccCCHHHHH--H---------HHcCeEe--CCcccccEEEEEeC------CE
Confidence 2589999999999998754311 1 1223333 23444556677663 47
Q ss_pred EEEEEeCCCchhHHHHHHHHcCCCeeCCcCCC
Q 037167 231 LVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYV 262 (353)
Q Consensus 231 ll~~~l~TGR~HQIR~hla~lG~PIvGD~~Yg 262 (353)
+++|+|.|||+||||+||+++||||+||..|.
T Consensus 123 ~l~i~L~tGR~HQIRr~~a~lG~pV~~L~R~~ 154 (237)
T 2gml_A 123 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTR 154 (237)
T ss_dssp EEEEEECCCSTTHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCcHHHHHHHHHcCCCEeeeEEEE
Confidence 89999999999999999999999999998874
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.50 E-value=9.9e-09 Score=78.55 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=53.1
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCC-----------CCCCCCCccEEE
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWK-----------EPDVPYLLEVLY 69 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~-----------~~~~~~~~~Ily 69 (353)
|||.+||.+.... .||+.++++|++|.|+|||+++ ++++.|++||.|.+...... .......+.++|
T Consensus 1 ~RLD~~L~~~~~~-~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 78 (92)
T 2k6p_A 1 MRIDKFLQSVGLV-KRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYI 78 (92)
T ss_dssp CBHHHHSTTTTSC-CCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSE
T ss_pred ChHHHHHHHCCCC-CCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHH
Confidence 6888888875432 4888899999999999999998 79999999999988532211 011123467888
Q ss_pred ECCcE
Q 037167 70 EDDDL 74 (353)
Q Consensus 70 ed~~~ 74 (353)
||+++
T Consensus 79 ed~~~ 83 (92)
T 2k6p_A 79 APKTK 83 (92)
T ss_dssp EECCC
T ss_pred HhcCC
Confidence 88764
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.39 E-value=8.9e-08 Score=84.17 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=58.4
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCcEEEEE--
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDDLIALN-- 78 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivvn-- 78 (353)
|||..+|.+.... .||++++++|..|.|+|||++++.+++.|++||.|.+.......... ..++..|
T Consensus 99 ~RLD~~L~~~g~~-~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~~~~----------~~~l~~~~~ 167 (209)
T 2vqe_D 99 SRLDNVVYRLGFA-VSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELI----------RQNLEAMKG 167 (209)
T ss_dssp TBHHHHHHHTTSS-SSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHH----------HHHHHHTTT
T ss_pred HHHHHHHHHhcCc-CCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccchHHH----------HHHHHhcCC
Confidence 6888888876543 59999999999999999999998899999999999986543211100 0123334
Q ss_pred -CCCCCccccCC
Q 037167 79 -KPSGLQVLPGG 89 (353)
Q Consensus 79 -KP~G~~~~~~~ 89 (353)
||+|++|...+
T Consensus 168 ~kp~g~l~~d~~ 179 (209)
T 2vqe_D 168 RKVGPWLSLDVE 179 (209)
T ss_dssp CCCCTTCCEETT
T ss_pred CCCCCeEEEecc
Confidence 89999886544
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.17 E-value=2.9e-07 Score=68.21 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=44.9
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEee
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHR 53 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~ 53 (353)
|||.+||...... .||++++++|++|.|+|||++++++++.|.+||.|.+.+
T Consensus 21 ~RLdk~L~~~g~~-~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 21 VELCDLLKLEGWS-ESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CCHHHHHHHHTSC-SSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred chHHHHHHHCCCC-CCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 6888888887432 389999999999999999999988999999999988753
No 13
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.11 E-value=7.6e-06 Score=66.70 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=44.8
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEee
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHR 53 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~ 53 (353)
|||..||...... .||+.+.++|.+|.|+|||+++ ++++.|++||.|.+..
T Consensus 9 ~RLDk~L~~~~~~-~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~ 59 (133)
T 1dm9_A 9 VRLDKWLWAARFY-KTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 (133)
T ss_dssp CBHHHHHHHTTSS-SSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEE
T ss_pred hhHHHHHHHCCCC-CCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEe
Confidence 6899999886443 4999999999999999999998 7999999999998853
No 14
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.09 E-value=5e-06 Score=69.90 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=56.5
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCcEEEEECC
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDDLIALNKP 80 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivvnKP 80 (353)
|||.++|.+.... .||++++++|.+|.|+|||++++++++.|.+||.|.+........ .+.-.. +.+ +||
T Consensus 51 ~RLD~~L~~~g~~-~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~~~----kl~~al--~~~---~~~ 120 (159)
T 1c05_A 51 SRLDNLVYRLGLA-RTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQ----VIKEAL--EAN---NYI 120 (159)
T ss_dssp HBHHHHHHHTTSC-SSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSSCH----HHHHHH--HTC---CCC
T ss_pred HHHHHHHHHcCCc-CCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceehHH----HHHHHH--HHh---CCC
Confidence 4788888877543 599999999999999999999988999999999998864322100 000000 012 899
Q ss_pred CCCccccC
Q 037167 81 SGLQVLPG 88 (353)
Q Consensus 81 ~G~~~~~~ 88 (353)
+|..|...
T Consensus 121 ~g~v~~d~ 128 (159)
T 1c05_A 121 PDYLSFDP 128 (159)
T ss_dssp CSSEEEET
T ss_pred CCeEEEec
Confidence 99988643
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=4e-06 Score=60.65 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=42.5
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecC--CCEEEE
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSA--GSELVY 51 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~--gd~i~~ 51 (353)
||..+|.+.... .||++++++|..|.|+|||+++++|++.|.+ +|.|.+
T Consensus 9 RLD~~l~~~gla-~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~ 59 (71)
T 2cqj_A 9 RLPTVLLKLRMA-QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTW 59 (71)
T ss_dssp EHHHHHHHTTCS-SSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEE
T ss_pred HHHHHHHHhCCc-CCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEE
Confidence 677777776553 4999999999999999999999999999998 788875
No 16
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.88 E-value=6.9e-06 Score=71.39 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=44.9
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCC
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLP 55 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~ 55 (353)
|||+.+|.+.... .||++++++|..|.|+|||++|+.|++.|++||.|.+....
T Consensus 89 ~RLD~~L~r~g~a-~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~ 142 (201)
T 3bbn_D 89 MRLDNILFRLGMA-PTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQ 142 (201)
T ss_dssp SBTTTTTTTTTSS-SSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSST
T ss_pred HHHHHHHHHcCCc-CCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcccc
Confidence 4666666665433 59999999999999999999998899999999999986443
No 17
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.87 E-value=3.2e-06 Score=73.57 Aligned_cols=53 Identities=21% Similarity=0.083 Sum_probs=45.8
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeC
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRL 54 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~ 54 (353)
|||+.+|...... .||+.++++|..|.|+|||++++.|++.|++||.|.+...
T Consensus 95 ~RLD~~L~r~g~~-~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 95 GRLDNVVYRMGFG-ATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp TBTTHHHHTTSSC-SSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred hhHHHHHHHhcch-hHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 6788888775443 5999999999999999999999889999999999987543
No 18
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.66 E-value=3.8e-05 Score=70.89 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=45.8
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECC-E-EccCCCceecCCCEEEEee
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDG-R-VVNDPNIILSAGSELVYHR 53 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg-~-~v~~~~~~v~~gd~i~~~~ 53 (353)
|||..+|.++... .||++++++|.+|+|+||| + ++.+|+++|.+||.|.+.+
T Consensus 7 ~RLD~~L~~~g~~-~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 7 ERVDVLAYKQGLF-ETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EEHHHHHHHTTSS-SSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hhHHHHHHHcCCc-ccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 4888888887654 5999999999999999999 8 7889999999999998853
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.64 E-value=2.9e-05 Score=66.10 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=43.6
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCC--CEEEEe
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAG--SELVYH 52 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~g--d~i~~~ 52 (353)
|||..+|.+.... .||+.+.++|..|.|+|||++|++|++.|.+| |.|.+.
T Consensus 103 ~RLD~~L~~~G~a-~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~ 155 (180)
T 3j20_D 103 RRLQTIVYKKGLA-RTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYA 155 (180)
T ss_dssp TSHHHHHHHHTSS-SSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECS
T ss_pred hhhhheeecCccc-CcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEe
Confidence 4677777665543 49999999999999999999999999999999 888773
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.47 E-value=7.1e-05 Score=63.95 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=42.7
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCC--EEEE
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGS--ELVY 51 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd--~i~~ 51 (353)
|||..+|.+.... .||+++.++|..|.|+|||++|++|++.|.+|| .|.+
T Consensus 107 ~RLD~vL~~~G~a-~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v 158 (181)
T 2xzm_D 107 RRLQTRVFKLNLA-NSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDF 158 (181)
T ss_dssp TBHHHHHHHTTCS-SSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEEC
T ss_pred cchhHHHHhcccc-CCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEE
Confidence 6788888776553 499999999999999999999999999999997 4543
No 21
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=97.22 E-value=0.00028 Score=65.04 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=53.4
Q ss_pred CcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhcc
Q 037167 72 DDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADK 151 (353)
Q Consensus 72 ~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~g 151 (353)
+.+++||||+|+.+| .+++.+++.+. ..+.+..+.||...||+|+++-.+. .++...+.
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~---------~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~-- 61 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK---------TRKVGHGGTLDPFACGVLIIGVNQG--TRILEFYK-- 61 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGT--
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc---------cceecccccCCCCcceeEEEEECHH--HhHHHHhC--
Confidence 469999999999876 45666766553 2567889999999999999999764 34554443
Q ss_pred ccccccchhhhhhccceEEEEEEEEEe
Q 037167 152 TSVIDADSTVMELSQRKITKIYRALVH 178 (353)
Q Consensus 152 ~~~~~~~~~~~~~~~~~v~K~Y~alv~ 178 (353)
.-.|+|.|.+.
T Consensus 62 ----------------~~~K~Y~a~~~ 72 (309)
T 1r3e_A 62 ----------------DLKKVYWVKMR 72 (309)
T ss_dssp ----------------TSCEEEEEEEE
T ss_pred ----------------ccCcEEEEEEE
Confidence 23799999875
No 22
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=97.14 E-value=0.00042 Score=65.03 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=54.1
Q ss_pred ECCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhh
Q 037167 70 EDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFA 149 (353)
Q Consensus 70 ed~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~ 149 (353)
-.+.+|+||||.|+.+| .+++.+++.+. ..+.+..+.||...||+|+++-... .++...+.
T Consensus 44 ~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~---------~~KvGH~GTLDP~atGvL~v~~g~a--Tk~~~~l~ 104 (334)
T 2aus_C 44 IQYGVINLDKPPGPTSH--------EVVAWIKRILN---------LEKAGHGGTLDPKVSGVLPVALERA--TRVVQALL 104 (334)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC---------cceeccccccCCccceeEEEEeChh--hhhHHHhc
Confidence 34689999999999776 45666665553 2567889999999999999999753 34554443
Q ss_pred ccccccccchhhhhhccceEEEEEEEEEe
Q 037167 150 DKTSVIDADSTVMELSQRKITKIYRALVH 178 (353)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~~v~K~Y~alv~ 178 (353)
...|+|.|.+.
T Consensus 105 ------------------~~~K~Y~~~~~ 115 (334)
T 2aus_C 105 ------------------PAGKEYVALMH 115 (334)
T ss_dssp ------------------TCCEEEEEEEE
T ss_pred ------------------ccCcEEEEEEE
Confidence 34799999875
No 23
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.14 E-value=0.0005 Score=63.87 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=53.3
Q ss_pred CcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhcc
Q 037167 72 DDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFADK 151 (353)
Q Consensus 72 ~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~g 151 (353)
+.+++||||+|+.+| .+++.+++.+. ..+.+-.+.||...||+|+++-...+ ++...+.+
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~---------~kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~~- 84 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN---------ANRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD- 84 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT-
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc---------cceeccCCCCCCCCeeEEEEEECHHH--hHHHHhcc-
Confidence 479999999999775 45666766553 25678899999999999999997643 35555543
Q ss_pred ccccccchhhhhhccceEEEEEEEEEe
Q 037167 152 TSVIDADSTVMELSQRKITKIYRALVH 178 (353)
Q Consensus 152 ~~~~~~~~~~~~~~~~~v~K~Y~alv~ 178 (353)
-.|+|.|.+.
T Consensus 85 -----------------~~K~Y~a~~~ 94 (327)
T 1k8w_A 85 -----------------SDKRYRVIAR 94 (327)
T ss_dssp -----------------SCEEEEEEEE
T ss_pred -----------------CCcEEEEEEE
Confidence 3699999875
No 24
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=97.14 E-value=0.00036 Score=64.51 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=54.1
Q ss_pred CCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHhhc
Q 037167 71 DDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYFAD 150 (353)
Q Consensus 71 d~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f~~ 150 (353)
.+.+++||||.|+.+| .+++.+++.+. ..+.+-.+.||...||+|+++-.+.+ ++...+.
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~---------~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~- 64 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA---------TRRVGHAGTLDPMATGVLVIGIERAT--KILGLLT- 64 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTT-
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc---------cccccccccCCCCCeEEEEEEECHHH--hHHHHhC-
Confidence 3479999999999876 46667776554 25788899999999999999997643 4444443
Q ss_pred cccccccchhhhhhccceEEEEEEEEEe
Q 037167 151 KTSVIDADSTVMELSQRKITKIYRALVH 178 (353)
Q Consensus 151 g~~~~~~~~~~~~~~~~~v~K~Y~alv~ 178 (353)
.-.|+|.|.+.
T Consensus 65 -----------------~~~K~Y~~~~~ 75 (316)
T 1sgv_A 65 -----------------AAPKSYAATIR 75 (316)
T ss_dssp -----------------TSCEEEEEEEE
T ss_pred -----------------cCCcEEEEEEE
Confidence 34799999875
No 25
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.13 E-value=0.00084 Score=59.51 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=55.4
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCcEEEE
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDDLIAL 77 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivv 77 (353)
.|+=+|..+++...+++++++.+.+|.|+|||++++++.+.+..+|+|++.. ....++++|.....+++
T Consensus 44 PL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k-------t~e~fr~i~d~kGr~~~ 112 (243)
T 3j20_E 44 PLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE-------TGEHYRVLPNRIGKLIL 112 (243)
T ss_dssp EHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT-------TTEEEEEEECSSSCEEE
T ss_pred eehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc-------cCceeEEEecCCCceEE
Confidence 5677889999887899999999999999999999999999999999998842 12245667754444443
No 26
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=97.10 E-value=0.00041 Score=65.40 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=54.7
Q ss_pred EECCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHh
Q 037167 69 YEDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYF 148 (353)
Q Consensus 69 yed~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f 148 (353)
|-.+.+|+||||+|+.+| .+++.+++.+. ..+.+-.+-||...||||+++-... .++...+
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~---------~~KvGH~GTLDP~AtGvL~v~~G~a--Tk~~~~l 123 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILN---------LDKAGHGGTLDPKVTGVLPVALERA--TKTIPMW 123 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGT
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC---------ccccccccccCCCceeEEEEEeCHH--HhHHHHh
Confidence 334689999999999876 45666665553 2567889999999999999999753 3455444
Q ss_pred hccccccccchhhhhhccceEEEEEEEEEe
Q 037167 149 ADKTSVIDADSTVMELSQRKITKIYRALVH 178 (353)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~v~K~Y~alv~ 178 (353)
. ...|+|.|.+.
T Consensus 124 ~------------------~~~K~Y~~~~~ 135 (357)
T 2apo_A 124 H------------------IPPKEYVCLMH 135 (357)
T ss_dssp T------------------SSCEEEEEEEE
T ss_pred c------------------cCCcEEEEEEE
Confidence 3 35799999875
No 27
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.10 E-value=0.00014 Score=62.50 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=40.7
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCC--EEEE
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGS--ELVY 51 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd--~i~~ 51 (353)
+||..+|...... .||+.+.++|..|.|+|||++|+.|++.|.+|+ .|.+
T Consensus 107 ~RLD~~L~r~G~a-~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~ 158 (197)
T 3u5c_J 107 RRLQTQVYKLGLA-KSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 158 (197)
T ss_dssp TSHHHHHHHSSTT-SSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBC
T ss_pred HHHHHHHHHcccc-CCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEE
Confidence 3566666665443 599999999999999999999999999999995 4543
No 28
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=97.08 E-value=0.00074 Score=58.62 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=45.9
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEE
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
.|+=+|..+++...+++++++.+.+|.|+|||++++++.+.+..+|+|++
T Consensus 9 PL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 9 TLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp EHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred eeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 56778888888777899999999999999999999999999999999988
No 29
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.98 E-value=0.00091 Score=63.71 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=55.0
Q ss_pred EECCcEEEEECCCCCccccCCCCCcchHHHHHHHHHhhcCCCccCCCCCCcccccCCCCCceEEEEEeChHHHHHHHHHh
Q 037167 69 YEDDDLIALNKPSGLQVLPGGLFQQRTVLNQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAGYF 148 (353)
Q Consensus 69 yed~~~ivvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~L~~~f 148 (353)
|-.+.+|+||||.|+.+| .++..+++.+. ..+.+..+-||...||||+++-... .++...+
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~---------~kKvGH~GTLDP~AtGvL~v~iG~a--TKl~~~l 116 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILR---------CEKTGHSGTLDPKVTGCLIVCIDRA--TRLVKSQ 116 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHT---------CSCEEESSCCCTTCEEEEEEEEGGG--GGGHHHH
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC---------cCcccccCCCCCCCeEEEEEEEChH--HhHhHHh
Confidence 344689999999999876 35666766554 2578889999999999999999753 3445554
Q ss_pred hccccccccchhhhhhccceEEEEEEEEEe
Q 037167 149 ADKTSVIDADSTVMELSQRKITKIYRALVH 178 (353)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~v~K~Y~alv~ 178 (353)
.+ -.|+|.|.+.
T Consensus 117 ~~------------------~~K~Y~a~~~ 128 (400)
T 3u28_A 117 QG------------------AGKEYVCIVR 128 (400)
T ss_dssp HH------------------SCEEEEEEEE
T ss_pred cC------------------CCcEEEEEEE
Confidence 32 3699999875
No 30
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.40 E-value=7.5e-05 Score=64.16 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=33.5
Q ss_pred CHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEE
Q 037167 16 PLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 16 sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
||+.+.++|..|.|+|||++|+.|++.|.+||.+.|
T Consensus 123 SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I 158 (195)
T 3iz6_C 123 SIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHI 158 (195)
T ss_dssp HHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSS
T ss_pred CHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEE
Confidence 899999999999999999999999999999998654
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.87 E-value=0.024 Score=50.70 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=52.7
Q ss_pred CcHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCcEEEEE
Q 037167 1 LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDDLIALN 78 (353)
Q Consensus 1 ~~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivvn 78 (353)
+.|+=+|...+.+..+.+++.+.+.+|.|+|||++.++..+.+---|+|++... ...++++|.....+++.
T Consensus 42 lPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt-------~e~fRll~D~kGrf~l~ 112 (265)
T 3iz6_D 42 LPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKT-------GENYRLLYDTKGRFRLQ 112 (265)
T ss_dssp -CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSS-------CCEEEEEECTTSCEEEE
T ss_pred eeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCC-------CCEEEEEECCCCcEEEE
Confidence 356778888888766778999999999999999999888777766699987421 23456777666555544
No 32
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=94.86 E-value=0.043 Score=48.90 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=53.0
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHc--CCEEECCEEccCCCceecCCCEEEEeeCCCCCCCCCCCccEEEECCcEEEEE
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQN--GQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVLYEDDDLIALN 78 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~--G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivvn 78 (353)
.|+=+|...+.+..+.+++++.+.+ |.|+|||++.++..+.+---|+|++.... ..++++|.....+++.
T Consensus 43 PL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~-------e~fRll~D~kGrf~l~ 114 (260)
T 2xzm_W 43 PLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD-------QSFRILYDTKGRFVLK 114 (260)
T ss_dssp EHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGT-------EEEEEEECSSSCEEEE
T ss_pred hhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCC-------CEEEEEEcCCccEEEE
Confidence 5677888888887789999999999 99999999998888888777999874221 2355666655544444
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=93.94 E-value=0.024 Score=50.59 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=44.4
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEEEEe
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
.|+=+|...+.+..+.+++.+.+.+|.|+|||++.++..+.+---|+|++.
T Consensus 43 PL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~ 93 (261)
T 3u5c_E 43 PLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLD 93 (261)
T ss_dssp EHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEET
T ss_pred eeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEc
Confidence 567788888888677899999999999999999999888888777999874
No 34
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=90.51 E-value=0.5 Score=45.65 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=36.9
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCC
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGS 47 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd 47 (353)
++.+.|...-. ..|+++++++|.+|.|+|||+++++++..+..++
T Consensus 370 ~~~~~l~~~~l-~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 370 WVARLFTLAGL-TPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EHHHHHHHTTS-SSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cHHHHHHHhCC-cccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 36666665433 3699999999999999999999999998888765
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=90.18 E-value=0.055 Score=52.24 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCEE
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSEL 49 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~i 49 (353)
+|.+.|...-. ..|+++++++|.+|.|+|||+++++++..+.++|.+
T Consensus 354 ~l~~lL~~agl-~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 354 NIVEVLIETGI-SPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp ------------------------------------------------
T ss_pred cHHHHHHHcCC-ccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 45566654332 258999999999999999999999888888887754
No 36
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=89.70 E-value=0.27 Score=47.53 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=37.2
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCC
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGS 47 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd 47 (353)
++++.|.+.-.. .|+++++++|.+|.|+|||++|++++..+..+|
T Consensus 357 ~~~~ll~~~gl~-~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVASGLS-ASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHHTSC-SSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHhCCc-ccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 577777765433 699999999999999999999999888887653
No 37
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=85.06 E-value=0.17 Score=48.68 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccCCCceecCCCE
Q 037167 3 LIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVNDPNIILSAGSE 48 (353)
Q Consensus 3 l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~~~~~v~~gd~ 48 (353)
+++.|.+.- ...|+++++++|.+|.|+|||++|++++..+..+|.
T Consensus 354 ~~~~l~~~g-l~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 354 LVELLVSAG-ISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHhC-CCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 455555432 235899999999999999999999988888877654
No 38
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=83.19 E-value=2.2 Score=30.43 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=25.2
Q ss_pred HHHHHHHcC--CEEECCEEccCCCceecCCCEEEEe
Q 037167 19 GWLQRIQNG--QITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 19 ~~~~~I~~G--~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
.+.+.+..+ .|.|||+.+. .++.|+.||+|.+.
T Consensus 41 ~~~~~l~~~~~~v~vN~~~v~-~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 41 RWALALEDGKLLAAVNQTLVS-FDHPLTDGDEVAFF 75 (81)
T ss_dssp HHHHHHCCTTCEEEETTEECC-TTCBCCTTCEEEEE
T ss_pred hHHHHhcCCCEEEEECCEECC-CCCCCCCCCEEEEe
Confidence 444455444 4889999984 78999999999875
No 39
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=81.56 E-value=1 Score=37.32 Aligned_cols=36 Identities=17% Similarity=-0.028 Sum_probs=29.2
Q ss_pred cHHHHHHhhcCCCCCHHHHHHHHHcCCEEECCEEccC
Q 037167 2 TLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVVND 38 (353)
Q Consensus 2 ~l~~~l~~~~~~~~sr~~~~~~I~~G~V~vNg~~v~~ 38 (353)
.|++.|.+.-.. .|+++++++|.+|-|+|||.++.+
T Consensus 51 ~ivdlLv~aGLa-~SKsEARRlI~qGGv~VNg~kv~~ 86 (164)
T 2ktl_A 51 TFSKVLWSAGLV-ASKSEGQRIINNNGAYVGSRPGVK 86 (164)
T ss_dssp SHHHHHHHHTSC-STHHHHHHHHHHTCEEEEECCSCC
T ss_pred cHHHHHHHhCcc-cCHHHHHHHHHhCCEEECCEeccc
Confidence 477878765443 699999999999999999988743
No 40
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=72.16 E-value=1.7 Score=32.74 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=24.2
Q ss_pred CCEEECCEEccCCCceecCCCEEEEeeCCC
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVYHRLPW 56 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~~~~~~ 56 (353)
..|-|||+.+. .++.|+.||+|++...-.
T Consensus 59 ~~V~Vng~~v~-~d~~L~dGDRVEIyrpl~ 87 (97)
T 2hj1_A 59 NKIGIFSRPIK-LTDVLKEGDRIEIYRPLL 87 (97)
T ss_dssp SEEEEEECSCC-TTCBCCTTCEEEECCCCC
T ss_pred cEEEEcCEECC-CCccCCCCCEEEEEeccc
Confidence 46899999985 899999999999975443
No 41
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=70.30 E-value=7.2 Score=30.59 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.2
Q ss_pred CCEEECCEEccCCCceecCCCEEEE
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
..++|||++|. ....|+.||+|.+
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~l 113 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILW 113 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEE
T ss_pred CCEEECCEEcC-CcEECCCCCEEEE
Confidence 46899999996 4588999999976
No 42
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=70.08 E-value=6 Score=29.00 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=21.2
Q ss_pred CEEECCEEccC---CCceecCCCEEEEee
Q 037167 28 QITVDGRVVND---PNIILSAGSELVYHR 53 (353)
Q Consensus 28 ~V~vNg~~v~~---~~~~v~~gd~i~~~~ 53 (353)
.|.|||+.+.. .++.|+.||+|.+.+
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 58899999853 578999999998753
No 43
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=68.08 E-value=5.6 Score=27.90 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.0
Q ss_pred CEEECCEEccCCCceecCCCEEEEe
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALI 71 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEE
T ss_pred EEEECCEECC-CCCCcCCCCEEEEE
Confidence 5899999985 68999999999875
No 44
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=66.88 E-value=5 Score=35.26 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=31.6
Q ss_pred HcCCEEECCEEccCCCceec-CCCEEEEeeCCCCCCCCCCCccEEEECCcEEEE
Q 037167 25 QNGQITVDGRVVNDPNIILS-AGSELVYHRLPWKEPDVPYLLEVLYEDDDLIAL 77 (353)
Q Consensus 25 ~~G~V~vNg~~v~~~~~~v~-~gd~i~~~~~~~~~~~~~~~~~Ilyed~~~ivv 77 (353)
.+|.|+|||++++ ....++ .||.|.+.+ +.+.+..++++++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~ig~-----------~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYVEG-----------IWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEETT-----------EEEEECSSEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEECC-----------EEEEEECCEEEEE
Confidence 3788999999996 566899 999998743 3467777777774
No 45
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=66.39 E-value=4.7 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=23.4
Q ss_pred HcCCEEECCEEccCCCceecCCCEEEEe
Q 037167 25 QNGQITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 25 ~~G~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
..-.|.|||+.+...++.|+.||+|.+.
T Consensus 41 ~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 41 GVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp TTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred hccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 4456899999966788999999999875
No 46
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=63.47 E-value=7.4 Score=28.19 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred CEEECCEEccCCCceecCCCEEEEe
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 60 ~v~VN~~~v~-~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 60 NVLRNGEAAA-LGEATAAGDELALF 83 (89)
T ss_dssp EEEETTEECC-TTSBCCTTCEEEEE
T ss_pred EEEECCEECC-CCcccCCCCEEEEE
Confidence 6899999995 79999999999875
No 47
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=62.67 E-value=8.1 Score=32.50 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=20.7
Q ss_pred cCCEEECCEEccCCCceecCCCEEEE
Q 037167 26 NGQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 26 ~G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
...++|||++|+ ....|+.||+|.+
T Consensus 139 ~a~t~VNG~~I~-~~~~L~~GDrI~l 163 (184)
T 4egx_A 139 GADTYVNGKKVT-EPSILRSGNRIIM 163 (184)
T ss_dssp TCCEEETTEECC-SCEECCTTCEEEE
T ss_pred CCeEEEcCEEcc-ccEEcCCCCEEEE
Confidence 346999999996 4588999999866
No 48
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=58.59 E-value=12 Score=25.91 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=20.7
Q ss_pred CEEECCEEccCCCceecCCCEEEEee
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYHR 53 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~~ 53 (353)
.|.+||+.+. .+..|+.||.|.+..
T Consensus 41 ~vavN~~~v~-~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 41 VVKKNGQIVI-DEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEEETTEECC-TTSBCCTTCEEEEEE
T ss_pred EEEECCEECC-CcccCCCCCEEEEEe
Confidence 3789999985 678999999998753
No 49
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=57.72 E-value=8.5 Score=29.50 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH-HcC--C------EEECCEEcc---CCCceecCCCEEEEe
Q 037167 3 LIEFYSTKHKNSAPLQGWLQRI-QNG--Q------ITVDGRVVN---DPNIILSAGSELVYH 52 (353)
Q Consensus 3 l~~~l~~~~~~~~sr~~~~~~I-~~G--~------V~vNg~~v~---~~~~~v~~gd~i~~~ 52 (353)
|+++|.+++.. . |.++ + ..| . |.|||.-+. ..++.|+.||.|.+.
T Consensus 40 Ll~~L~~~~~~-~-r~~l---f~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 40 LVQLLKTNYVK-E-RPDL---LVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HHHHHTTTTCC-S-CHHH---HBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred HHHHHHHHccc-c-chhh---EecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 67777777754 2 4443 3 334 2 889998773 467999999998774
No 50
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=55.54 E-value=8.7 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEECCEEccCCCceecCCCEEEEee
Q 037167 29 ITVDGRVVNDPNIILSAGSELVYHR 53 (353)
Q Consensus 29 V~vNg~~v~~~~~~v~~gd~i~~~~ 53 (353)
.+|||+.+ ..++.|+.||.|++..
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEEE
T ss_pred EEECCEEc-CCCcccCCCCEEEEEc
Confidence 57899998 5899999999998754
No 51
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=53.36 E-value=9.6 Score=28.26 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.8
Q ss_pred CEEECCEEccCCCceecCCCEEEEe
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 69 ~v~VNg~~v~-~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEELKDGDVVGVF 92 (98)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEEE
Confidence 4899999984 78999999999874
No 52
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=52.99 E-value=4.7 Score=28.61 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.5
Q ss_pred CEEECCEEccCCCceecCCCEEEEe
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 48 ~VavNg~~v~-~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 48 IAKVNGKVVL-EDDEVKDGDFVEVI 71 (77)
T ss_dssp CEEETTEEEC-SSSCCCSSCCCBCS
T ss_pred EEEECCEECC-CCCCcCCCCEEEEE
Confidence 5899999985 68999999998764
No 53
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=52.54 E-value=7.5 Score=27.79 Aligned_cols=25 Identities=12% Similarity=0.396 Sum_probs=20.4
Q ss_pred CEEECCEEccCC---CceecCCCEEEEe
Q 037167 28 QITVDGRVVNDP---NIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~---~~~v~~gd~i~~~ 52 (353)
.|.+||+.+... ++.|+.||.|.+.
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 588999999643 3789999999874
No 54
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=50.33 E-value=11 Score=25.47 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=20.4
Q ss_pred CEEECCEEccC---CCceecCCCEEEEee
Q 037167 28 QITVDGRVVND---PNIILSAGSELVYHR 53 (353)
Q Consensus 28 ~V~vNg~~v~~---~~~~v~~gd~i~~~~ 53 (353)
.|.|||+.+.. .++.|+.||+|.+..
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 48899999853 247899999998753
No 55
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=49.95 E-value=13 Score=27.19 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=19.9
Q ss_pred CEEECCEEccCC---CceecCCCEEEEe
Q 037167 28 QITVDGRVVNDP---NIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~---~~~v~~gd~i~~~ 52 (353)
.|.|||+.+... ++.|+.||+|.+.
T Consensus 54 aVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 54 IVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp EEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred EEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 378999998532 5789999999875
No 56
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=49.12 E-value=6.8 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.2
Q ss_pred CEEECCEEccCC---CceecCCCEEEEe
Q 037167 28 QITVDGRVVNDP---NIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~---~~~v~~gd~i~~~ 52 (353)
.|.+||+.+... ++.|+.||.|.+.
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 478999998543 5789999999875
No 57
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=46.88 E-value=17 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.1
Q ss_pred CCEEECCEEccCCCceecCCCEEEE
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
..++|||++|. ....|+.||+|.+
T Consensus 110 ngt~VNG~~i~-~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 110 ADTYVNGKKVT-EPSILRSGNRIIM 133 (154)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CceEECCEEcC-CceECCCCCEEEE
Confidence 45899999995 4578999999976
No 58
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=45.91 E-value=15 Score=28.26 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHcC------CEEECCEEc---cCCCceecCCCEEEEe
Q 037167 3 LIEFYSTKHKNSAPLQGWLQRIQNG------QITVDGRVV---NDPNIILSAGSELVYH 52 (353)
Q Consensus 3 l~~~l~~~~~~~~sr~~~~~~I~~G------~V~vNg~~v---~~~~~~v~~gd~i~~~ 52 (353)
|+++|.+++.. . |..+. ...| .|.|||+-+ ...++.|+.||.|.+.
T Consensus 48 Ll~~L~~~~~~-~-~~~lf--~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 48 LLVWIKKNLLK-E-RPELF--IQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp HHHHHTTTTCC-S-CHHHH--CCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred HHHHHHHHccc-h-hHhhC--ccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 67777777754 2 33331 1334 388999865 3478999999999874
No 59
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=45.10 E-value=16 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=20.4
Q ss_pred CEEECCEEccCCCceecCCCEEEEee
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYHR 53 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~~ 53 (353)
.++|||+.+ +.++.|..||.|.+-.
T Consensus 38 aa~vNg~lv-dl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 38 GAKVNHKLV-PLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEEETTEEC-CTTCBCCSSSBEEEEE
T ss_pred EEEECCEEe-CCCcCcCCCCEEEEEE
Confidence 347899998 5789999999988753
No 60
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=43.67 E-value=12 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.422 Sum_probs=20.2
Q ss_pred CEEECCEEccCC---CceecCCCEEEEee
Q 037167 28 QITVDGRVVNDP---NIILSAGSELVYHR 53 (353)
Q Consensus 28 ~V~vNg~~v~~~---~~~v~~gd~i~~~~ 53 (353)
.|.|||+.+... ++.|+.||+|.+..
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 378999998531 68899999998753
No 61
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.43 E-value=18 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=20.7
Q ss_pred CEEECCEEcc---CCCceecCCCEEEEe
Q 037167 28 QITVDGRVVN---DPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~---~~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+. ..++.|+.||+|.+.
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 4899999885 268899999999874
No 62
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=39.49 E-value=6.9 Score=29.55 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.0
Q ss_pred HcCCEEECCEEccCCCceecCCCEE
Q 037167 25 QNGQITVDGRVVNDPNIILSAGSEL 49 (353)
Q Consensus 25 ~~G~V~vNg~~v~~~~~~v~~gd~i 49 (353)
..|.|+|||+++ ....|..||.|
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDtI 82 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENAV 82 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGCB
T ss_pred ccCcEEECCEEe--eeEEccCCccc
Confidence 368899999998 35677778874
No 63
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=36.94 E-value=18 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.9
Q ss_pred CEEECCEEcc---CCCceecCCCEEEEe
Q 037167 28 QITVDGRVVN---DPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~---~~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+. ..++.|+.||+|.+.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 5899999884 468899999999874
No 64
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=36.14 E-value=14 Score=26.08 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.2
Q ss_pred CEEECCEEccCCCceecCCCEEEEe
Q 037167 28 QITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
-|.+||+.+. ++..+. ||.|++.
T Consensus 38 vV~vNG~~v~-~d~~l~-GD~VeIv 60 (74)
T 2l32_A 38 TVLVDGRPVP-EDQSVE-VDRVKVL 60 (74)
T ss_dssp CEECCCCCCC-TTSSSC-CCCEEEC
T ss_pred EEEECCEECC-HHHCCC-CCEEEEE
Confidence 5788999884 677665 9999874
No 65
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=34.05 E-value=28 Score=26.70 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=19.6
Q ss_pred CCEEECCEEccCCCceecCCCEEEE
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
.-++|||+++. ....|+.||+|.+
T Consensus 80 ngt~vNg~~i~-~~~~L~~GD~I~i 103 (120)
T 1wln_A 80 AETYVDGQRIS-ETTMLQSGMRLQF 103 (120)
T ss_dssp SCEEETSCBCS-SCEEECTTCEEEE
T ss_pred CCEEECCEEcC-CCEECCCCCEEEE
Confidence 46789999996 4568999999977
No 66
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=33.17 E-value=29 Score=26.56 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=24.3
Q ss_pred cCCEEECCEEccCCCceecCCCEEEEeeC--CCCCCCCCCCccEEEECC
Q 037167 26 NGQITVDGRVVNDPNIILSAGSELVYHRL--PWKEPDVPYLLEVLYEDD 72 (353)
Q Consensus 26 ~G~V~vNg~~v~~~~~~v~~gd~i~~~~~--~~~~~~~~~~~~Ilyed~ 72 (353)
+|.|.+||--. ..+.+||.|.+-.. -.++.... ...|+|-|+
T Consensus 69 Sg~I~lNGAAA----r~~~~GD~vII~ay~~~~~~e~~~-~P~vV~vd~ 112 (114)
T 3oug_A 69 SKTIALNGPAA----RRCEIGDQLFIISYTQVDPTRENI-KPKLVDLKT 112 (114)
T ss_dssp SCCEEEEGGGG----GGCCTTCEEEEEEEEEECTTSCCC-CCEEEECC-
T ss_pred CCEEEeCCHHH----hccCCCCEEEEEECCcCCHHHHhc-CCEEEEeCC
Confidence 47788898654 46889999876321 11122222 456777664
No 67
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=32.98 E-value=32 Score=25.32 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.3
Q ss_pred CEEECCEEcc---CCCceecCCCEEEEe
Q 037167 28 QITVDGRVVN---DPNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~---~~~~~v~~gd~i~~~ 52 (353)
.|.|||+-+. ..++.|+.||+|.+.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 3889999763 467899999999875
No 68
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=30.74 E-value=13 Score=27.67 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=25.7
Q ss_pred cCCEEECCEEccCCCceecCCCEEEEeeCC-C-CCCCCCCCccEEEECCc
Q 037167 26 NGQITVDGRVVNDPNIILSAGSELVYHRLP-W-KEPDVPYLLEVLYEDDD 73 (353)
Q Consensus 26 ~G~V~vNg~~v~~~~~~v~~gd~i~~~~~~-~-~~~~~~~~~~Ilyed~~ 73 (353)
+|.|.+||--. +.+++||.|.+-... . ++....+..+|+|-|++
T Consensus 42 SG~I~lNGAAA----rl~~~GD~vII~aY~~~~~~e~~~~~P~vV~vd~~ 87 (96)
T 1vc3_B 42 SGVIGINGAAA----HLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDER 87 (96)
T ss_dssp TTCEEEEGGGG----GTCCTTCEEEEEEEEEECHHHHTTCCCEEEEECTT
T ss_pred CCeEEEchHHH----ccCCCCCEEEEEECccCCHHHHhcCCCEEEEECCC
Confidence 47889999654 468899999763211 1 11112334457776643
No 69
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=28.73 E-value=47 Score=25.93 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=17.9
Q ss_pred CEEECCEEccCCC--ceecCCCEEEE
Q 037167 28 QITVDGRVVNDPN--IILSAGSELVY 51 (353)
Q Consensus 28 ~V~vNg~~v~~~~--~~v~~gd~i~~ 51 (353)
-.+|||+++. ++ ..|+.||+|.+
T Consensus 95 GT~vNg~ri~-~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIP-PRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECC-TTCCEECCTTCEEEE
T ss_pred ceEECCEECC-CCceeECCCCCEEEE
Confidence 5678999985 33 46899999987
No 70
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=28.40 E-value=27 Score=27.34 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=19.2
Q ss_pred CCEEECCEEccCCCceecCCCEEEE
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
.-++|||+++.. ..|+.||+|.+
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEEC
T ss_pred CceEECCEEeEe--EECCCCCEEEE
Confidence 468899999853 88999999976
No 71
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=28.19 E-value=38 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=19.6
Q ss_pred CCEEECCEEccCCCceecCCCEEEE
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
.-++|||+++......|..||+|.+
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCeEECCEEcCCCceECCCCCEEEE
Confidence 4578999999532478999999987
No 72
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=27.14 E-value=28 Score=25.97 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=18.3
Q ss_pred CEEECCEEccCCCceecCCCEEEE
Q 037167 28 QITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
-++|||+++. ....|+.||.|.+
T Consensus 70 Gt~vng~~i~-~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 70 GVIVEGRKIE-HQSTLSANQVVAL 92 (106)
T ss_dssp CCEETTEECS-SEEECCTTCCEEE
T ss_pred CeEECCEECC-CCeECCCCCEEEE
Confidence 4678999985 3468999999976
No 73
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=26.00 E-value=33 Score=25.27 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.7
Q ss_pred eCCchhHHHHHHhccccccccCc
Q 037167 320 APLPSVLKTREEGREVDKSVGSE 342 (353)
Q Consensus 320 aplP~~f~~~~~~l~~~~~~~~~ 342 (353)
.|+|.|....|+..|.+++++.+
T Consensus 52 ~piP~Di~raL~~vGI~p~id~~ 74 (101)
T 2lf6_A 52 EPLPPDLRRALESVGINPFIPEE 74 (101)
T ss_dssp CCCCHHHHHHHHHHTCCSCCCTT
T ss_pred CCCCHHHHHHHHcCCCCCCCcch
Confidence 58999999999999999998763
No 74
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=23.85 E-value=50 Score=27.12 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.3
Q ss_pred CEEECCEEccC---CCceecCCCEEEEe
Q 037167 28 QITVDGRVVND---PNIILSAGSELVYH 52 (353)
Q Consensus 28 ~V~vNg~~v~~---~~~~v~~gd~i~~~ 52 (353)
.|.|||+.+.. .++.|+.||.|.+.
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 48999999853 17889999999874
No 75
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=22.74 E-value=13 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.0
Q ss_pred cCCEEECCEEccCCCceecCCCEEEEe
Q 037167 26 NGQITVDGRVVNDPNIILSAGSELVYH 52 (353)
Q Consensus 26 ~G~V~vNg~~v~~~~~~v~~gd~i~~~ 52 (353)
+|.|.+||--. ..+++||.|.+-
T Consensus 40 SG~I~lNGAAA----rl~~~GD~vII~ 62 (97)
T 1uhe_A 40 RGEICVNGAAA----RKVAIGDVVIIL 62 (97)
T ss_dssp TTCEEEEGGGG----GGCCTTCEEEEE
T ss_pred CCeEEEchHHH----ccCCCCCEEEEE
Confidence 68899999654 468899999763
No 76
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=22.44 E-value=54 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=18.3
Q ss_pred CEEECCEEccCCCceecCCCEEEE
Q 037167 28 QITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 28 ~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
-++|||+++. ...|+.||.|.+
T Consensus 66 Gt~vng~~i~--~~~L~~gd~i~i 87 (100)
T 3po8_A 66 GTTVNNAPVQ--EWQLADGDVIRL 87 (100)
T ss_dssp CCEETTEECS--EEECCTTCEEEE
T ss_pred CEEECCEECc--eEECCCCCEEEE
Confidence 4788999985 578999999976
No 77
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=22.05 E-value=49 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.1
Q ss_pred EeCCchhHHHHHHhccccccccCc
Q 037167 319 TAPLPSVLKTREEGREVDKSVGSE 342 (353)
Q Consensus 319 ~aplP~~f~~~~~~l~~~~~~~~~ 342 (353)
..|+|.|+...|+..|.+++++.+
T Consensus 68 ~~piP~Di~raL~~VGI~P~id~~ 91 (117)
T 3tl8_B 68 RLPIPLDIGSALQNVGINPSIDLG 91 (117)
T ss_dssp CCCCCHHHHHHHHHTTCCCCCCCC
T ss_pred cCCCCHHHHHHHHhCCCCCCCcch
Confidence 358999999999999999998763
No 78
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=21.91 E-value=59 Score=24.50 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.7
Q ss_pred CCEEECCEEccCCCceecCCCEEEE
Q 037167 27 GQITVDGRVVNDPNIILSAGSELVY 51 (353)
Q Consensus 27 G~V~vNg~~v~~~~~~v~~gd~i~~ 51 (353)
.-.+|||+++. ...|+.||.|.+
T Consensus 73 nGt~vng~~i~--~~~L~~gd~i~i 95 (115)
T 2xt9_B 73 NGTYVNREPVD--SAVLANGDEVQI 95 (115)
T ss_dssp SCEEETTEECS--EEEECTTCEEEE
T ss_pred CCeEECCEEcc--eEECCCCCEEEE
Confidence 35678999985 478999999976
No 79
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=20.05 E-value=58 Score=24.16 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.0
Q ss_pred EeCCchhHHHHHHhccccccccC
Q 037167 319 TAPLPSVLKTREEGREVDKSVGS 341 (353)
Q Consensus 319 ~aplP~~f~~~~~~l~~~~~~~~ 341 (353)
..|+|.|+...|+..|.+++++.
T Consensus 62 ~~piP~Di~raL~~VGI~p~id~ 84 (107)
T 2lf3_A 62 LRPIPLDIANALEGVGITPRFDN 84 (107)
T ss_dssp CCCCCHHHHHHHHHTTCCCCCSS
T ss_pred cCCCCHHHHHHHHcCCCCCCCCc
Confidence 36899999999999999999976
Done!