BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037168
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 66 GNTILHETATSNHALPVADKVLRKAPGLLGMRNNNGETALLRAARYGKVDIFNFL---AG 122
G T LH A + H V K+L +A + ++ NG T L AAR G +++ L
Sbjct: 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 123 KISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCIEIVKDILSVYPQAVEHIDDEGRNIL 182
++ D R P LH+A + H +E+VK +L V D GR L
Sbjct: 60 DVNAKDKNGRTP----------LHLAARNGH---LEVVKLLLEAGAD-VNAKDKNGRTPL 105
Query: 183 HVAIKYRQLEIFERVVQ 199
H+A + LE+ + +++
Sbjct: 106 HLAARNGHLEVVKLLLE 122
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 100 NGETALLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGC 156
NG T L AAR G +++ L ++ D R P LH+A + H
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----------LHLAARNGH--- 47
Query: 157 IEIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPLRRLVRKIDYNGN 216
+E+VK +L V D GR LH+A + LE VV++ + V D NG
Sbjct: 48 LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLE----VVKLLLEAGADVNAKDKNGR 102
Query: 217 TIFHMAG 223
T H+A
Sbjct: 103 TPLHLAA 109
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 30 TVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLRK 89
T LH+A +++V LL + + +L NK+G T LH A H +PVAD VL K
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLG-----NKSGLTPLHLVAQEGH-VPVAD-VLIK 299
Query: 90 APGLLGMRNNNGETALLRAARYGKVDIFNFLAGKISGYDHATRLPF--LHRNDKTNVLHI 147
++ G T L A+ YG + + FL + + T+L + LH+ + I
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359
Query: 148 AILSLHFGC 156
L L G
Sbjct: 360 VTLLLKNGA 368
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 28 DDTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVL 87
D T LH A +++V LL+ + +L AG+T LH A H V +
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNL-----ATTAGHTPLHIAAREGHVETVLALLE 134
Query: 88 RKAPGLLGMRNNNGETALLRAARYGKVDIFNFLAGKISGYDHATRLPFLHRNDKTNVLHI 147
++A G T L AA+YGKV + L + + + A + + LH+
Sbjct: 135 KEAS--QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-------NGLTPLHV 185
Query: 148 AILSLHFGCIEIVKDILSVYPQAVEHIDD--EGRNILHVAIKYRQLEIFERVVQ 199
A+ H ++IVK +L P+ G LH+A K Q+E+ ++Q
Sbjct: 186 AV---HHNNLDIVKLLL---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 63 NKAGNTILHETATSNHALPVADKVLRKAPGLLGMRNNNGETALLRAARYGKVDIFNFLAG 122
+K GNT LH A + HA V K+L K + R+ +G T L AA+ G +I L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEV-KKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 123 K 123
K
Sbjct: 64 K 64
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 29 DTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLR 88
+T LH A ++ V KLL + D + ++K GNT LH A + HA V K+L
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIV--KLLL 62
Query: 89 KAPGLLGMRNNNGETALLRAARYGKVDIFNFLAGK 123
+ R+ +G T A + G +I L K
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Query: 22 YVFTIHD---DTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNH 78
YV I D +T LH + +V +LLD + K+ +QN+AG + + TA +
Sbjct: 102 YVVNIADSNGNTALHYSVSHANFPVVQQLLD----SGVCKVDKQNRAGYSPIMLTALAT- 156
Query: 79 ALPVADKV-----LRKAPGLLGMRNNNGETALLRAARYGKVDIFNFLAGKISGYDHATRL 133
L D + L + + + G+TAL+ A +G+VD+ L + +
Sbjct: 157 -LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN----- 210
Query: 134 PFLHRNDKTNVLHIAILSLHFGCIEIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEI 193
+ +D + L A G EI +L+V + D +G L VA+ Q EI
Sbjct: 211 --VQDDDGSTALMCAC---EHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of
Swi/snf Chromatin Remodeler
Length = 439
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 406 SWAKIVLYTCAFIPVGVFALSYFPI-------YITKSVTRGLNYLRDKAKVLVPQWLELR 458
+++ I L C I VG PI ++ S+ G + D K L+PQW + +
Sbjct: 150 TYSXISLQNCCIIDVGTHHTDIIPIVDYAQLDHLVSSIPXGGQSINDSLKKLLPQWDDDQ 209
Query: 459 VE 460
+E
Sbjct: 210 IE 211
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 44 VIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLRKAPGLLGMR------ 97
++ L E P + D M RQ+ GNT+LH K + K LL ++
Sbjct: 153 IVNYLTENPHKKAD-MRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFP 211
Query: 98 --------NNNGETALLRAARYGKVDIF 117
NN+G + L+ AA+ GK+ IF
Sbjct: 212 DSNLEAVLNNDGLSPLMMAAKTGKIGIF 239
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 29 DTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLR 88
+T LH+A +SD +LL+ D + Q+ G T LH A S A V +LR
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXI-----QDNMGRTPLH-AAVSADAQGVFQILLR 76
Query: 89 KAPGLLGMRNNNGETALLRAAR 110
L R ++G T L+ AAR
Sbjct: 77 NRATDLDARMHDGTTPLILAAR 98
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 27/115 (23%)
Query: 32 LHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILH------ETATSNHALPVADK 85
L +A TK+ D+V LL E P Q + + GNT+LH + + N AL
Sbjct: 153 LSLAACTKQWDVVTYLL-ENPHQPA-SLEATDSLGNTVLHALVMIADNSPENSAL----- 205
Query: 86 VLRKAPGLLGM-------------RNNNGETALLRAARYGKVDIF-NFLAGKISG 126
V+ GLL M N+ G T L AA+ GK++IF + L + SG
Sbjct: 206 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 260
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 29 DTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLR 88
+T LH+A +SD +LL+ D ++ Q+ G T LH A S A V ++R
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIR 111
Query: 89 KAPGLLGMRNNNGETALLRAAR 110
L R ++G T L+ AAR
Sbjct: 112 NRATDLDARMHDGTTPLILAAR 133
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 26/105 (24%)
Query: 32 LHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILH------ETATSNHALPVADK 85
L +A TK+ D+V LL E P Q + + GNT+LH + + N AL
Sbjct: 140 LSLAACTKQWDVVTYLL-ENPHQPA-SLEATDSLGNTVLHALVMIADNSPENSAL----- 192
Query: 86 VLRKAPGLLGM-------------RNNNGETALLRAARYGKVDIF 117
V+ GLL M N+ G T L AA+ GK++IF
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 29 DTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLR 88
+T LH+A +SD +LL+ D ++ Q+ G T LH A S A V ++R
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIR 112
Query: 89 KAPGLLGMRNNNGETALLRAAR 110
L R ++G T L+ AAR
Sbjct: 113 NRATDLDARMHDGTTPLILAAR 134
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 29 DTVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLR 88
+T LH+A +SD +LL+ D ++ Q+ G T LH A S A V ++R
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIR 79
Query: 89 KAPGLLGMRNNNGETALLRAAR 110
L R ++G T L+ AAR
Sbjct: 80 NRATDLDARMHDGTTPLILAAR 101
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 105 LLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCIEIVK 161
LL AAR G+ D L ++ D A+ L LH L+ +G +EIV+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATD-ASGLTPLH------------LAATYGHLEIVE 64
Query: 162 DILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPLRRLVRKIDYNGNTIFHM 221
+L + V ID G LH+A LEI E +++ V +D G+T H+
Sbjct: 65 -VLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHL 119
Query: 222 AGI 224
A I
Sbjct: 120 AAI 122
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 98 NNNGETALLRAARYGKVDIFNFLAGKISGYDHATRLPFLHRNDKTNV--LHIAILSLHFG 155
+N+G T L AA G ++I L +G D ++ +D T + LH+A + H
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLL--KNGAD-------VNASDLTGITPLHLAAATGHLE 94
Query: 156 CIEIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 195
+E+ L + V D++G LH+A KY LEI E
Sbjct: 95 IVEV----LLKHGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 100 NGETALLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGC 156
NG T L AAR G +++ L ++ D R P LH+A + H
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----------LHLAARNGH--- 47
Query: 157 IEIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQ 199
+E+VK +L V D GR LH+A + LE+ + +++
Sbjct: 48 LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 66 GNTILHETATSNHALPVADKVLRKAPGLLGMRNNNGETALLRAARYGKVDIFNFL---AG 122
G T LH A + H V K+L +A + ++ NG T L AAR G +++ L
Sbjct: 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 123 KISGYDHATRLPFLHRNDKTNVLHIAILSLHFG 155
++ D R P LH + L + L L G
Sbjct: 60 DVNAKDKNGRTP-LHLAARNGHLEVVKLLLEAG 91
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 145 LHIAILSLHFGCIEIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPL 204
LH+A + H +E+VK +L V D GR LH+A + LE VV++ +
Sbjct: 6 LHLAARNGH---LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLE----VVKLLLEA 57
Query: 205 RRLVRKIDYNGNTIFHMAG 223
V D NG T H+A
Sbjct: 58 GADVNAKDKNGRTPLHLAA 76
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 30 TVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLRK 89
T LH+A +SD +LL+ D ++ Q+ G T LH A S A V ++R
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIRN 112
Query: 90 APGLLGMRNNNGETALLRAAR 110
L R ++G T L+ AAR
Sbjct: 113 RATDLDARMHDGTTPLILAAR 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 105 LLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCIEIVK 161
LL AAR G+ D L + YDH R P LH+A H +EIV
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTP----------LHMAAAVGH---LEIV- 51
Query: 162 DILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQ 199
++L V +D G LH+A LEI E +++
Sbjct: 52 EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 101 GETALLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCI 157
G T L AA +G ++I L ++ YD P LH+A HFG +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP----------LHLAA---HFGHL 93
Query: 158 EIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 195
EIV+ +L V DD G LH+A LEI E
Sbjct: 94 EIVE-VLLKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 105 LLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCIEIVK 161
LL AAR G+ D L ++ D A+ L LH L+ +G +EIV+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATD-ASGLTPLH------------LAATYGHLEIVE 64
Query: 162 DILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPLRRLVRKIDYNGNTIFHM 221
+L + V ID G LH+A LEI E +++ V +D G+T H+
Sbjct: 65 -VLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHL 119
Query: 222 AGI 224
A I
Sbjct: 120 AAI 122
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 19/120 (15%)
Query: 105 LLRAARYGKVDIFNFLAGKISGYDHATRLPFLHRNDKTNV--LHIAILSLHFGCIEIVKD 162
LL AAR G+ D L +G D ++ ND + LH+ + + H IE+
Sbjct: 18 LLEAARAGQDDEVRILMA--NGAD-------VNANDWFGITPLHLVVNNGHLEIIEV--- 65
Query: 163 ILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPLRRLVRKIDYNGNTIFHMA 222
L Y V D G LH+A LEI E +++ V +DY G T H+A
Sbjct: 66 -LLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD----VNAMDYQGYTPLHLA 120
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 105 LLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCIEIVK 161
LL AAR G+ D L ++ D + + P LH+A + H +E+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTP----------LHLAAIKGHLEIVEV-- 65
Query: 162 DILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPLRRLVRKIDYNGNTIFHM 221
L + V D G LH+A Y LEI E +++ V D G T H+
Sbjct: 66 --LLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD----VNATDTYGFTPLHL 119
Query: 222 A 222
A
Sbjct: 120 A 120
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 21/121 (17%)
Query: 105 LLRAARYGKVDIFNFL---AGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCIEIVK 161
LL AAR G+ D L ++ D P LH+A + H +E+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTP----------LHLAAKTGHLEIVEV-- 65
Query: 162 DILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFERVVQMEIPLRRLVRKIDYNGNTIFHM 221
L Y V D+ G LH+A LEI E +++ V DY G T H+
Sbjct: 66 --LLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD----VNAKDYEGFTPLHL 119
Query: 222 A 222
A
Sbjct: 120 A 120
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 30 TVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLRK 89
V+H A + D + LL+ D ++ ++ GN LH A H L V + +++
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNI-----EDNEGNLPLHLAAKEGH-LRVVEFLVKH 125
Query: 90 APGLLGMRNNNGETALLRAARYGKVDIFNFLAGKISGYDHATRL 133
+G RN+ G+TA A YG+ ++ + + + +G AT L
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM--QANGAGGATNL 167
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 30 TVLHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHETATSNHALPVADKVLRK 89
V+H A D + LL+ D ++ ++ GN LH A H L V + +++
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNI-----EDNEGNLPLHLAAKEGH-LRVVEFLVKH 125
Query: 90 APGLLGMRNNNGETALLRAARYGKVDIFNFLAGKISGYDHATRL 133
+G RN+ G+TA A YG+ ++ + + + +G AT L
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM--QANGAGGATNL 167
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 66 GNTILHETATSNHALPVADKVLRKAPGLLGMRNNNGETAL 105
GNT LH A N P K+L K L+G N GETAL
Sbjct: 207 GNTALHYAALYNQ--PDCLKLLLKGRALVGTVNEAGETAL 244
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 32 LHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILH------ETATSNHALPVA-- 83
L +A TK+ D+V LL E P Q + + GNT+LH + + N AL +
Sbjct: 145 LSLAACTKQWDVVSYLL-ENPHQPA-SLQATDSQGNTVLHALVXISDNSAENIALVTSXY 202
Query: 84 DKVLRKAPGLL------GMRNNNGETALLRAARYGKVDIF 117
D +L+ L +RN T L AA+ GK++IF
Sbjct: 203 DGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIF 242
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 66 GNTILHETATSNHALPVADKVLRKAPGLLGMRNNNGETAL 105
GNT LH A N P K+L K L+G N GETAL
Sbjct: 226 GNTALHYAALYNQ--PDCLKLLLKGRALVGTVNEAGETAL 263
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 32 LHMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTILHE--------TATSNHALPVA 83
L +A T + +V L + Q+ + RQ+ GNT+LH + +
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201
Query: 84 DKVLRKAPGLL------GMRNNNGETALLRAARYGKVDIF 117
D +L K L + NN+G + L+ AA+ GK+ IF
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 98 NNNGETALLRAARYGKVDIFNFLAGKISGYDHATRLPFLHRNDKTNVLHIAILSLHFGCI 157
+N G T L AA G ++I L + D + + LH+A ++G +
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY-------TPLHLAA---YWGHL 93
Query: 158 EIVKDILSVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 195
EIV+ +L V +D +G LH+A K+ LEI E
Sbjct: 94 EIVE-VLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,003,094
Number of Sequences: 62578
Number of extensions: 501171
Number of successful extensions: 1394
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 70
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)