BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037169
(860 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 312 bits (799), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 216/328 (65%), Gaps = 23/328 (7%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAM-VVDFSAAKDGELGIL-------------------TV 306
GNIRV R RP++KE+ A V F A D + +L
Sbjct: 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQ 63
Query: 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERK 366
DVF + LVTS +DG+NVCIFAYGQTG GKT+TMEGT +N G+N R L+LLF +E+
Sbjct: 64 DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENIKEV 424
+ Y+I+VSA E+YNE +RDLL P +KLEIR +G +VPGLTE +++++ ++
Sbjct: 124 SDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 182
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
V G R N+NEHSSRSH +L ++V+ + G T KL LVDLAGSER+
Sbjct: 183 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 242
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544
K+ +G RL+EAQ+IN+SLSALGDVI++L ++ GH+P+RNSKLT+LLQDSL GDSKTLM
Sbjct: 243 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302
Query: 545 LQISPSEQDLGETLSSLNFASRVRGVEL 572
+Q+SP E++ ETL SL FA RVR VEL
Sbjct: 303 VQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 265 bits (676), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 217/362 (59%), Gaps = 36/362 (9%)
Query: 267 GNIRVFCRCRPLSKEEASAG--------------------------HAMVVDFSAAKDGE 300
G IRV+CR RPL+++E+S + V D A++D
Sbjct: 13 GKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQD-- 70
Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
D+F D LV S +DGYNVCIFAYGQTG+GKTFT+ G + N G+ R + LF
Sbjct: 71 ------DIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLL-DTSPTSKKLEIRQASEGFHHVPGLTEAKIE 419
I + + F++S+ +E+Y + + DLL S KLEI++ S+G V +T I
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 184
Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479
++E+ +L GS R V N+NE SSRSH +L + +++ +L + KL VDLAG
Sbjct: 185 TLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAG 244
Query: 480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
SER+ K+ G +LKEAQ+IN+SLSALGDVI +L++ + HIPYRN KLT L+ DSLGG++
Sbjct: 245 SERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNA 304
Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVG 599
KTLMF+ +SP+E +L ET +SL +ASRVR + P+ K I ++ ++K ++ K++ G
Sbjct: 305 KTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPS-KHISSKEMVRLKKLVAYWKEQAG 363
Query: 600 SK 601
K
Sbjct: 364 KK 365
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 219/371 (59%), Gaps = 37/371 (9%)
Query: 267 GNIRVFCRCRPLSKEEASAG--------------------------HAMVVDFSAAKDGE 300
G IRV+CR RPL ++E A + V D +A +D
Sbjct: 5 GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQD-- 62
Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
DVF D LV S +DGYNVCIFAYGQTG+GKTFT+ G N G+ R + LF+
Sbjct: 63 ------DVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 116
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIE 419
I ++ F++S+ +E+Y + + DLL + KL+I++ S+G V +T I
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 176
Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479
+E+ ++ GS R +NE SSRSH ++ + +++ NL + KL VDLAG
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236
Query: 480 SERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDS 539
SER+ K+ G +LKEAQ+IN+SLSALGDVIS+L++ + HIPYRN KLT L+ DSLGG++
Sbjct: 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNA 296
Query: 540 KTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVG 599
KTLMF+ ISP+E +L ET +SL +ASRVR + P+ K + ++ ++K ++ K++ G
Sbjct: 297 KTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPS-KNVSSKEVARLKKLVSYWKEQAG 355
Query: 600 SKDDVIQKLEE 610
K D ++LEE
Sbjct: 356 RKGD-DEELEE 365
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 209/339 (61%), Gaps = 35/339 (10%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGI-------------LTVDVFADAS- 313
++RV RCRP++ +E +A + VVD K G++ + T D D +
Sbjct: 22 SVRVVVRCRPMNGKEKAASYDKVVDVDV-KLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 314 -----------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLF 359
PLV SVL G+N IFAYGQTGTGKT+TMEG + + RGV + + +F
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIF 140
Query: 360 KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIE 419
R + Y + S LE+Y E+IRDLL T K+LE+++ + +V L+ +
Sbjct: 141 THIS-RSQNQQYLVRASYLEIYQEEIRDLLSKDQT-KRLELKERPDTGVYVKDLSSFVTK 198
Query: 420 NIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-INGE--CTKSKLWLVD 476
++KE+ V+++G+ R+VG+ N+NEHSSRSH + I+++ + ++GE KL LVD
Sbjct: 199 SVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVD 258
Query: 477 LAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSL 535
LAGSER AKT QGERLKEA IN SLSALG+VIS+L KS HIPYR+SKLT LLQDSL
Sbjct: 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSL 318
Query: 536 GGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
GG++KT+M + P+ ++ ETL++L +A+R + ++ P
Sbjct: 319 GGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKP 357
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 206/362 (56%), Gaps = 45/362 (12%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSA-------AKDGELGILTVDVFADAS------- 313
+I+V R RP ++ E +G +V F +K+ + G T D D S
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQ-GSFTFDRVFDMSCKQSDIF 65
Query: 314 -----PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ----QNRGVNYRTLELLFKIAEE 364
P V +L+GYN +FAYGQTG GK++TM GT RGV R +E +F
Sbjct: 66 DFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILS 125
Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
Y++ VS +E+Y E+IRDLL +P + L + + +V GL E + +++EV
Sbjct: 126 SAANIEYTVRVSYMEIYMERIRDLL--APQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEV 183
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
++V+ G NARAV + N+N+ SSRSH + I++ KN+ G +L+LVDLAGSE++
Sbjct: 184 YEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVG 243
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLM 543
KT G+ L+EA+ IN+SLSALG VI++L KS H+PYR+SKLT +LQ+SLGG+S+T +
Sbjct: 244 KTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTL 303
Query: 544 FLQISPSEQDLGETLSSLNFASRVRGV--------ELSPARKQIDISKLQKVKMMLEKTK 595
+ SPS + ETLS+L F R + + ELSPA ++K ML K K
Sbjct: 304 IINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA----------ELKQMLAKAK 353
Query: 596 QE 597
+
Sbjct: 354 TQ 355
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 192/345 (55%), Gaps = 40/345 (11%)
Query: 267 GNIRVFCRCRP-LSKEEASAGHAMVVDFSAAKDG--------ELGILTVD---------- 307
GNIRV+CR RP L E H ++ F+ AK E IL+ +
Sbjct: 5 GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPS 64
Query: 308 -----VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362
+F + LV S LDGYNVCIFAYGQTG+GKT+TM G+ TL +FK
Sbjct: 65 HTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM--LNAGDGMIPMTLSHIFKWT 122
Query: 363 EERKET-FTYSISVSALEVYNEQIRDLL---------DTSPTSKKLEIRQASEG-FHHVP 411
KE + Y + +E+YNE I DLL D S+K +IR E ++
Sbjct: 123 ANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYIT 182
Query: 412 GLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
+T K+ + +V +L S R+ + NE SSRSH + + + +NL GE ++ K
Sbjct: 183 NVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGK 242
Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
L LVDLAGSER+ + V GERL+E QNIN+SLS LGDVI +L T +IP+RNSKLT
Sbjct: 243 LNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLT 302
Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELS 573
+LLQ SL GDSKTLMF+ I P + ETL+SL FAS+V +++
Sbjct: 303 YLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/354 (41%), Positives = 194/354 (54%), Gaps = 55/354 (15%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAMVV----------------------------------- 291
GNIRVFCR RP+ E + +++
Sbjct: 22 GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPP 81
Query: 292 --DFSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---- 345
DFS + G +VF + + LV S LDGY VCIFAYGQTG+GKTFTMEG
Sbjct: 82 RHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 346 QNRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTSPTSK----KLEI 400
Q G+ R L LF +A+E + +TYS S +E+YNE +RDLL T T K + EI
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATG-TRKGQGGECEI 200
Query: 401 RQASEGFHHVPGLTEAKIENI---KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISV 457
R+A G + +T A+ + KEV +LH+ RAV NE SSRSH + + +
Sbjct: 201 RRAGPGSEEL-TVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 458 KAKNLINGECTKSKLWLVDLAGSERLAKTEVQG----ERLKEAQNINRSLSALGDVISSL 513
++ G + L LVDLAGSERL G ERL+E Q IN SLS LG VI +L
Sbjct: 260 SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL 319
Query: 514 ATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRV 567
+ K H+PYRNSKLT+LLQ+SLGG +K LMF+ ISP E+++ E+L+SL FAS+V
Sbjct: 320 SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 200/369 (54%), Gaps = 73/369 (19%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDFSA-----------AKDGELG-ILTVDVFADAS--- 313
++V RCRPLS++E +AGH ++ A GEL T D DAS
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 314 ---------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVNYRTLELLFKI 361
PL+ SVL G+N +FAYGQTGTGKT+TM+GT + RGV E +F
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTH 142
Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENI 421
R + Y + S LE+Y E+IRDLL P K+LE+++ E ++ L+ +N+
Sbjct: 143 I-SRSQNQQYLVRASYLEIYQEEIRDLLSKEP-GKRLELKENPETGVYIKDLSSFVTKNV 200
Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTK-----------S 470
KE+ V+++G+ RAVGS ++NE SSRSH + I+V EC++
Sbjct: 201 KEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV--------ECSERGSDGQDHIRVG 252
Query: 471 KLWLVDLAGSERLAKT------------------------EVQGERLKEAQNINRSLSAL 506
KL LVDLAGSER K GER KEA IN SLSAL
Sbjct: 253 KLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSAL 312
Query: 507 GDVISSLA-TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFAS 565
G+VI++LA +S HIPYR+SKLT LLQDSLGG++KT+M + P+ E+LS+L FA+
Sbjct: 313 GNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFAN 372
Query: 566 RVRGVELSP 574
R + ++ P
Sbjct: 373 RAKNIKNKP 381
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 194/344 (56%), Gaps = 42/344 (12%)
Query: 267 GNIRVFCRCRP-LSKEEASAGHAMVVDFSAAKDGELGILTVD------------------ 307
GNIRV+CR RP L E+ + H V F +G+ G +T++
Sbjct: 28 GNIRVYCRIRPPLPHEDDNIEHIKVQPFDD-DNGDQG-MTINRGNSQVIPFKFDKIFDQQ 85
Query: 308 -----VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK-I 361
+F + L+ S LDGYNVCIFAYGQTG+GKT+TM G+ T+ +F I
Sbjct: 86 ETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTM--LNPGDGIVPATINHIFSWI 143
Query: 362 AEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK---------KLEIRQASE-GFHHVP 411
+ ++Y +S +E+YNE I DLL + S+ K EIR E ++
Sbjct: 144 DKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYIT 203
Query: 412 GLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
+T +++ V VL + R+ S NEHSSRSH + I ++ KN GE ++
Sbjct: 204 NITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGI 263
Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
L LVDLAGSERL + V GERL+E Q+IN+SLS LGDVI +L + G HIP+RNSKLT
Sbjct: 264 LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLT 323
Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
+LLQ SL G SKTLMF+ ISP+ L ET++SL FAS+V ++
Sbjct: 324 YLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKM 367
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 190/343 (55%), Gaps = 32/343 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
+ + + GNIRVFCR R PL EE S +D A I +
Sbjct: 61 TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 120
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
D+F SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G ++ GV RT++L
Sbjct: 121 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 180
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
LF I R + Y I + LE+YNE + DLL S K +EIR A + +V +T
Sbjct: 181 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 238
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
E + + + ++H RA S NE SSRSH + + + ++ E + + L
Sbjct: 239 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 298
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
VDLAGSE KT R+ E +NINRSLS L +VI +L K HIPYRNSKLTHLL S
Sbjct: 299 VDLAGSES-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 354
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
LGG+SKTLMF+ +SP + E++ SL FA+ V +++ A++
Sbjct: 355 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 397
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 188/344 (54%), Gaps = 39/344 (11%)
Query: 266 LGNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGE 300
+GNIRV+CR RP K ++ S +M V +F K +
Sbjct: 1 MGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 60
Query: 301 LGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK 360
VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 61 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFN 118
Query: 361 -IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPG 412
I + + + + Y ++ +E+YNE I DLL + +K K EIR E
Sbjct: 119 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 178
Query: 413 LTEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471
+ K+E+ + V +L + R+ S NEHSSRSH + I + N G +
Sbjct: 179 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGT 238
Query: 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLT 528
L LVDLAGSER+ ++V G+RL+E QNIN+SLS LGDVI +L HIP+RNSKLT
Sbjct: 239 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 298
Query: 529 HLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
+LLQ SL GDSKTLMF+ ISPS + ETL+SL FAS+V L
Sbjct: 299 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 186/324 (57%), Gaps = 27/324 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD-----------------VFA 310
NI+V CR RPL++ E + G + F GE ++ V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIASKPYAFDRVFQSSTSQEQVYN 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERK 366
D A +V VL+GYN IFAYGQT +GKT TMEG + G+ R ++ +F
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
E + I VS E+Y ++IRDLLD S T+ L + + +V G TE + + EV D
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
+ G + R V N+NEHSSRSH + I+VK +N + KL+LVDLAGSE+++KT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
+G L EA+NIN+SLSALG+VIS+LA S ++PYR+SK+T +LQDSLGG+ +T + +
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
Query: 547 ISPSEQDLGETLSSLNFASRVRGV 570
SPS + ET S+L F R + +
Sbjct: 302 CSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 190/343 (55%), Gaps = 32/343 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
+ + + GNIRVFCR R PL EE S +D A I +
Sbjct: 47 TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 106
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
D+F SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G ++ GV RT++L
Sbjct: 107 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 166
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
LF I R + Y I + LE+YNE + DLL S K +EIR A + +V +T
Sbjct: 167 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 224
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
E + + + ++H RA S NE SSRSH + + + ++ E + + L
Sbjct: 225 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 284
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
VDLAGSE KT R+ E +NINRSLS L +VI +L K HIPYRNSKLTHLL S
Sbjct: 285 VDLAGSES-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 340
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
LGG+SKTLMF+ +SP + E++ SL FA+ V +++ A++
Sbjct: 341 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 383
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 219 bits (558), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 187/325 (57%), Gaps = 27/325 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD-----------------VFA 310
NI+V CR RPL++ E + G + F GE ++ V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIASKPYAFDRVFQSSTSQEQVYN 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERK 366
D A +V VL+GYN IFAYGQT +GKT TMEG + G+ R ++ +F
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
E + I VS E+Y ++IRDLLD S T+ L + + +V G TE + + EV D
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
+ G + R V N+NEHSSRSH + I+VK +N + KL+LVDLAGSE+++KT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
+G L EA+NIN+SLSALG+VIS+LA S ++PYR+SK+T +LQDSLGG+ +T + +
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
Query: 547 ISPSEQDLGETLSSLNFASRVRGVE 571
SPS + ET S+L F R + ++
Sbjct: 302 CSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 187/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
GNIRV+CR RP K ++ S +M V +F K +
Sbjct: 14 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 73
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 74 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 131
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
I + + + + Y ++ +E+YNE I DLL + +K K EIR E
Sbjct: 132 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 191
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
+ K+E+ + V +L + R+ S NEHSSRSH + I + N G + L
Sbjct: 192 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 251
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
LVDLAGSER+ ++V G+RL+E QNIN+SLS LGDVI +L HIP+RNSKLT+
Sbjct: 252 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 311
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
LLQ SL GDSKTLMF+ ISPS + ETL+SL FAS+V L
Sbjct: 312 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 218 bits (556), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 186/325 (57%), Gaps = 27/325 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVD-----------------VFA 310
NI+V CR RPL++ E + G V F GE ++ V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQ----GEDTVMIASKPYAFDRVFQSSTSQEQVYN 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERK 366
D A +V VL+GYN IFAYGQT +GK TMEG + G+ R ++ +F
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
E + I VS E+Y ++IRDLLD S T+ L + + +V G TE + + EV D
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKT 486
+ G + R V N+NEHSSRSH + I+VK +N + KL+LVDLAGSE+++KT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 487 EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546
+G L EA+NIN+SLSALG+VIS+LA S ++PYR+SK+T +LQDSLGG+ +T + +
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
Query: 547 ISPSEQDLGETLSSLNFASRVRGVE 571
SPS + ET S+L F R + ++
Sbjct: 302 CSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 189/343 (55%), Gaps = 32/343 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
+ + + GNIRVFCR R PL EE S +D A I +
Sbjct: 50 TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 109
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
D+F SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G ++ GV RT++L
Sbjct: 110 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 169
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
LF I R + Y I + LE+YNE + DLL S K +EIR A + +V +T
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 227
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
E + + + ++H RA S NE SSRSH + + + ++ E + + L
Sbjct: 228 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 287
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
VDLAGSE KT R+ E +NI RSLS L +VI +L K HIPYRNSKLTHLL S
Sbjct: 288 VDLAGSES-PKTST---RMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 343
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
LGG+SKTLMF+ +SP + E++ SL FA+ V +++ A++
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 386
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 186/336 (55%), Gaps = 32/336 (9%)
Query: 268 NIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV--------- 306
NIRVFCR R PL EE S +D A I +
Sbjct: 60 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 119
Query: 307 --DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAE 363
D+F SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G ++ GV RT++LLF I
Sbjct: 120 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 179
Query: 364 ERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLTEAKIENI 421
R + Y I + LE+YNE + DLL S K +EIR A + +V +TE + +
Sbjct: 180 YRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 237
Query: 422 KEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSE 481
+ ++H RA S NE SSRSH + + + ++ E + + LVDLAGSE
Sbjct: 238 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 297
Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
KT R+ E +NINRSLS L +VI +L K HIPYRNSKLTHLL SLGG+SKT
Sbjct: 298 S-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKT 353
Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARK 577
LMF+ +SP + E++ SL FA+ V +++ A++
Sbjct: 354 LMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 389
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 187/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAMVV----------DFSAAKDGEL 301
GNIRV+ R RP K ++ S +M V +F K +
Sbjct: 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 118
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
VDVF + LV S LDGYNV IFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 176
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
I + + + + Y ++ +E+YNE I DLL + +K K EIR E
Sbjct: 177 INKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 236
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
+ K+E+ + V +L + R+ S NEHSSRSH + I + N G + L
Sbjct: 237 VTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 296
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA---TKSGHIPYRNSKLTH 529
LVDLAGSER+ ++V G+RL+E QNIN+SLSALGDVI +L + HIP+RNSKLT+
Sbjct: 297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTY 356
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
LLQ SL GDSKTLMF+ ISPS + ETL+SL FAS+V L
Sbjct: 357 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
GNIRV+CR RP K ++ S +M V +F K +
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 120
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
I + + + + Y ++ +E+YNE I DLL + +K K EIR E
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
+ K+E+ + V +L + R+ S NEHSSRSH + I + N G + L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
LVDLAGS R+ ++V G+RL+E QNIN+SLS LGDVI +L HIP+RNSKLT+
Sbjct: 241 NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
LLQ SL GDSKTLMF+ ISPS + ETL+SL FAS+V L
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
GNIRV+CR RP K ++ S +M V +F K +
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 120
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
I + + + + Y ++ +E+YNE I DLL + +K K EIR E
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
+ K+E+ + V +L + R+ S NEHSSRSH + I + N G + L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
LVDLAGSER+ ++V G+RL+E QNI +SLS LGDVI +L HIP+RNSKLT+
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
LLQ SL GDSKTLMF+ ISPS + ETL+SL FAS+V L
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 191/324 (58%), Gaps = 23/324 (7%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-SAAKDGELGI-----LTVDVFAD----------- 311
I+V CR RPL+ E AG VV F + ++ + I L VF
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEA 72
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVNYRTLELLFKIAEERKET 368
A +VT VL GYN IFAYGQT +GKT TMEG +G+ R + +F +
Sbjct: 73 AKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVN 132
Query: 369 FTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVL 428
+ I VS E+Y ++IRDLLD S + L + + +V G TE + + ++V++V+
Sbjct: 133 LEFHIKVSYYEIYMDKIRDLLDVSKVN--LSVHEDKNRVPYVKGATERFVSSPEDVFEVI 190
Query: 429 HIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEV 488
G + R + N+NEHSSRSH + I+VK +NL N + KL+LVDLAGSE+++KT
Sbjct: 191 EEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGA 250
Query: 489 QGERLKEAQNINRSLSALGDVISSLAT-KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQI 547
+G L EA+NIN+SLSALG+VIS+LA HIPYR+SKLT +LQ+SLGG+++T + +
Sbjct: 251 EGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICC 310
Query: 548 SPSEQDLGETLSSLNFASRVRGVE 571
SP+ + ET S+L+F R + V+
Sbjct: 311 SPASFNESETKSTLDFGRRAKTVK 334
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 267 GNIRVFCRCRPLSK---------------EEASAGHAM----------VVDFSAAKDGEL 301
GNIRV+CR RP K ++ S +M V +F K +
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 302 GILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFK- 360
VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 120
Query: 361 IAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-------KLEIRQASEGFHHVPGL 413
I + + + + Y ++ +E+YNE I DLL + +K K EIR E
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 180
Query: 414 TEA-KIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472
+ K+E+ + V +L + R+ S NEHSS SH + I + N G + L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 473 WLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG---HIPYRNSKLTH 529
LVDLAGSER+ ++V G+RL+E QNIN+SLS LGDVI +L HIP+RNSKLT+
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVEL 572
LLQ SL GDSKTLMF+ ISPS + ETL+SL FAS+V L
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 215 bits (548), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 187/339 (55%), Gaps = 32/339 (9%)
Query: 261 STIQVLGNIRVFCRCR-PLSKEE-----------ASAGHAMVVDFSAAKDGELGILTV-- 306
+ + + GNIRVFCR R PL EE S +D A I +
Sbjct: 50 TVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ 109
Query: 307 ---------DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEL 357
D+F SPL+ S LDGYN+CIFAYGQ+G+GKT+TM+G ++ GV RT++L
Sbjct: 110 VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDL 169
Query: 358 LF-KIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFH--HVPGLT 414
LF I R + Y I + LE+YNE + DLL S K +EIR A + +V +T
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL--SNEQKDMEIRMAKNNKNDIYVSNIT 227
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
E + + + ++H RA S NE SSRSH + + + ++ E + + L
Sbjct: 228 EETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINL 287
Query: 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS 534
VDLAGSE KT R+ E +NINRSLS L +VI +L K HIPYRNSKLTHLL S
Sbjct: 288 VDLAGSES-PKTST---RMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 343
Query: 535 LGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELS 573
LGG+SKTLMF+ +SP + E++ SL FA+ V +++
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 198/344 (57%), Gaps = 40/344 (11%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAM---VVDFSAAKD------GELGI------------LT 305
GNIRVFCR R +S +S+ + ++ + A +D EL I
Sbjct: 374 GNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFL 433
Query: 306 VD-----------VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRT 354
D VF + S L+ LDG NVC+FAYGQTG+GKTFTM + G+ +
Sbjct: 434 FDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIPLS 491
Query: 355 LELLFKIAEERKET-FTYSISVSALEVYNEQIRDLLDT--SPTSKKLEIRQAS-EGFHHV 410
L+ +F EE KE ++Y++ +E+YNE I DLL+ P +K EI+ G V
Sbjct: 492 LKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTK-YEIKHDDIAGKTTV 550
Query: 411 PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKS 470
++ I++ ++ +L+ + R+ + N+HSSRSH + I ++ N + E +
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYG 610
Query: 471 KLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTH 529
L L+DLAGSERL + +G+RLKE Q IN+SLS LGDVI SL K G H+PYRNSKLT+
Sbjct: 611 TLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTY 670
Query: 530 LLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELS 573
LL+ SLGG+SKTLMF+ ISP +DL ET++SL FA++V ++
Sbjct: 671 LLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRIN 714
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 209 bits (531), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 169/266 (63%), Gaps = 13/266 (4%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAEERKETFTYSI 373
++ + DGYN CIFAYGQTG+GK++TM GT G+ R LF + +E E ++ +
Sbjct: 84 ILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKV 143
Query: 374 SVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
VS +E+YNE++RDLLD + + L++R+ S +V GL++ + + K++ ++ G+
Sbjct: 144 EVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNK 203
Query: 434 ARAVGSNNVNEHSSRSHCMLCISV-----KAKNLINGECTKSKLWLVDLAGSERLAKTEV 488
+R V + N+NE SSRSH + I++ K+ +GE KL LVDLAGSER KT
Sbjct: 204 SRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKV-GKLSLVDLAGSERATKTGA 262
Query: 489 QGERLKEAQNINRSLSALGDVISSLATKSG------HIPYRNSKLTHLLQDSLGGDSKTL 542
G+RLKE NIN+SL+ LG VIS+LA +S +PYR+S LT LL+DSLGG+SKT
Sbjct: 263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 322
Query: 543 MFLQISPSEQDLGETLSSLNFASRVR 568
M +SP+ + ETLS+L +A R +
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 189/333 (56%), Gaps = 34/333 (10%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-------SAAKDGELG---ILTVDVFADA------ 312
+RV R RPL +E GH + + +D G +L D +A
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACV 72
Query: 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM-EGT-----QQNRGVNYRTLELLFKIAEERK 366
PL+ + +G+N +FAYGQTG+GKT+TM E + + +G+ R + FK+ +E
Sbjct: 73 QPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE-N 131
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
+ + VS LEVY E+ RDLL+ S+ +++R+ G + G+ E +E + EV
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLS 191
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN--------LINGECTKSKLWLVDLA 478
+L +G+ AR G+ ++N SSRSH + ++++ + G+ SK VDLA
Sbjct: 192 LLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLA 251
Query: 479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT---KSGHIPYRNSKLTHLLQDSL 535
GSER+ KT GERLKE+ IN SL ALG+VIS+L + HIPYR+SK+T +L+DSL
Sbjct: 252 GSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSL 311
Query: 536 GGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
GG++KT+M +SPS D ETL++LN+ASR +
Sbjct: 312 GGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 183/338 (54%), Gaps = 34/338 (10%)
Query: 268 NIRVFCRCRPLSKEEA-----------SAGHAMVVDF-----SAAKDGELG-ILTVDVFA 310
NI+V RCRPL+ E A ++VD SA + ++ T D
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 311 DAS------------PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELL 358
D + PL+ +VL+G+N IFAYGQTG GKT+TM G ++ G + + L
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 359 FKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKI 418
F + + S LE+YNE+IRDL+ + KL +++ +V GL+ ++
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---TKLPLKEDKTRGIYVDGLSMHRV 181
Query: 419 ENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI-NGECTK-SKLWLVD 476
E+ ++ G R V + +N+ SSRSH + + ++ +I N E + KL LVD
Sbjct: 182 TTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241
Query: 477 LAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLG 536
LAGSER +KT GE L E IN SLSALG VIS L + HIPYR+SKLT LLQDSLG
Sbjct: 242 LAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLG 301
Query: 537 GDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
G+SKTLM ISP+ + ET+S+L +A R + ++ P
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKP 339
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 187/333 (56%), Gaps = 34/333 (10%)
Query: 269 IRVFCRCRPLSKEEASAGHAMVVDF-------SAAKDGELG---ILTVDVFADA------ 312
+RV R RPL +E GH + + +D G +L D +A
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACV 72
Query: 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM-EGT-----QQNRGVNYRTLELLFKIAEERK 366
PL+ + +G+N +FAYGQTG+GKT+TM E + + +G+ R + FK+ +E
Sbjct: 73 QPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE-N 131
Query: 367 ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWD 426
+ + VS LEVY E+ RDLL+ S+ +++R+ G + G+ E +E + EV
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLS 191
Query: 427 VLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN--------LINGECTKSKLWLVDLA 478
+L +G+ AR G+ ++N SSRSH + +++K + G+ SK VDLA
Sbjct: 192 LLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLA 251
Query: 479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT---KSGHIPYRNSKLTHLLQDSL 535
GSER+ KT GE KE+ IN SL ALG+VIS+L + +IPYR+SK+T +L+DSL
Sbjct: 252 GSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSL 311
Query: 536 GGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
GG++KT+M +SPS D ETL++LN+ASR +
Sbjct: 312 GGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 129 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 185
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 186 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 245
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 246 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 305
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 306 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 172/293 (58%), Gaps = 34/293 (11%)
Query: 320 LDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAEERKET--FTYSISVS 376
+GY+ CIFAYGQTG+GK++TM GT G+ RT E LF +IA + ET +Y++ VS
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192
Query: 377 ALEVYNEQIRDLLDTSPTSKK---LEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
EVYNE +RDLL +K L++R++ +V LTE + ++E+ + IG
Sbjct: 193 YFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDG 252
Query: 434 ARAVGSNNVNEHSSRSHCMLCISVKA--KNLINGECTK--SKLWLVDLAGSERLAKTEVQ 489
+R V S +N+ SSRSH + I +K +L + T+ S++ LVDLAGSER TE
Sbjct: 253 SRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEAT 312
Query: 490 GERLKEAQNINRSLSALGDVISSLA------------TKSGH----------IPYRNSKL 527
G+RL+E NIN+SL+ LG VI++LA KSG +PYR+S L
Sbjct: 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372
Query: 528 THLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQID 580
T LL+DSLGG+SKT M ISP++ D ETLS+L +A + + + Q+D
Sbjct: 373 TWLLKDSLGGNSKTAMIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQVD 423
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 140 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 197 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 256
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 257 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 316
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 317 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 137 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 194 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 253
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 254 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 313
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 314 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 194/349 (55%), Gaps = 45/349 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V RCRP + E ++ H++V D S+ K D G T
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 306 -VDVF-ADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 123 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 180 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 239
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 299
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P
Sbjct: 300 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 268 NIRVFCRCRPLS-KEEASAGHAMV----------------VDFSAAK----DGELGILT- 305
NI+V R RP + E ++ H++V D S+ K D G T
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 306 -VDVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR-----------GVNY 352
+DV+ +P++ V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 353 RTLELLF-KIAEERKETFTYSISVSALEVYNEQIRDLLD-TSPTSKKLEIRQASEGFHHV 410
RTL +F K+ + E +S+ VS LE+YNE++ DLL+ +S S++L++ V
Sbjct: 138 RTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 411 --PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE- 466
GL E + N EV+ +L G+ R + +N +SSRSH + +++ K I+GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 467 -CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNS 525
KL LVDLAGSE + ++ +R +EA NIN+SL LG VI++L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 526 KLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A R + + P Q
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 186/348 (53%), Gaps = 39/348 (11%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAK------------------DGELGILT--VD 307
NI+V+ R RPL+ E A VVD + D G + D
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 308 VFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ-----------QNRGVNYRTL 355
V++ SPL+ VL+GYN +FAYGQTGTGKT TM G + + G+ R L
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 356 ELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLT 414
LF E R Y++ +S LE+YNE++ DLL T T+K ++ +G + GL
Sbjct: 144 SHLFD--ELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLE 201
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGE--CTKSK 471
E + + +V+ +L G R + +N SSRSH + I V + N I GE K
Sbjct: 202 EIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGK 261
Query: 472 LWLVDLAGSERLAKT-EVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHL 530
L LVDLAGSE ++K +G R++E NIN+SL LG VI++L ++ H+PYR SKLT L
Sbjct: 262 LNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRL 321
Query: 531 LQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578
LQ+SLGG +KT + ISP +D+ ETLS+L +A R + ++ P Q
Sbjct: 322 LQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 162/263 (61%), Gaps = 9/263 (3%)
Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSI 373
P++ S L+GYN + AYG TG GKT TM G+ GV Y T+ L+K +E KE S
Sbjct: 96 PILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICST 155
Query: 374 SVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSN 433
+VS LEVYNEQIRDLL S L +R+ ++ V GLT + ++ +E+ +L G+
Sbjct: 156 AVSYLEVYNEQIRDLL---VNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNK 212
Query: 434 ARAVGSNNVNEHSSRSHCMLCISVKAKN---LINGECTKSKLWLVDLAGSERLAKTEVQG 490
R ++N SSRSH + I ++ ++ IN +K+ L+DLAGSER + + +G
Sbjct: 213 NRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKG 272
Query: 491 ERLKEAQNINRSLSALGDVISSLAT---KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQI 547
R E NINRSL ALG+VI++LA K+ HIPYRNSKLT LL+DSLGG+ +T+M +
Sbjct: 273 TRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAV 332
Query: 548 SPSEQDLGETLSSLNFASRVRGV 570
SPS +T ++L +A+R + +
Sbjct: 333 SPSSVFYDDTYNTLKYANRAKDI 355
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
++ +GYNVCIFAYGQTG GK++TM G Q+ +G+ + E LF +I + + +Y
Sbjct: 97 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 156
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
S+ VS +E+Y E++RDLL+ P +K L +R+ +V L++ + + ++ D++
Sbjct: 157 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 214
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
G+ AR V + N+NE SSRSH + I K N+ + SK+ LVDLAGSER
Sbjct: 215 GNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 272
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
T +G RLKE NIN+SL+ LG VIS+LA K+ IPYR+S LT LL+
Sbjct: 273 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 332
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
++LGG+S+T M +SP++ + ETLS+L +A R + +
Sbjct: 333 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
++ +GYNVCIFAYGQTG GK++TM G Q+ +G+ + E LF +I + + +Y
Sbjct: 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 140
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
S+ VS +E+Y E++RDLL+ P +K L +R+ +V L++ + + ++ D++
Sbjct: 141 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 198
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
G+ AR V + N+NE SSRSH + I K N+ + SK+ LVDLAGSER
Sbjct: 199 GNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 256
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
T +G RLKE NIN+SL+ LG VIS+LA K+ IPYR+S LT LL+
Sbjct: 257 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
++LGG+S+T M +SP++ + ETLS+L +A R + +
Sbjct: 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 169/291 (58%), Gaps = 14/291 (4%)
Query: 292 DFSAAKDGELGILTVDVFAD--ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQN-- 347
D+S DG L + D+ + A +V+ LDGYN I YGQTG GKT+TM G +N
Sbjct: 71 DWSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYK 130
Query: 348 -RGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDT----SPTSKKLEIRQ 402
RG+ R L+ +F++ EER T ++ VS LE+YNE + DLL T P+ + I +
Sbjct: 131 HRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVE 189
Query: 403 ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKA--K 460
+G + GL+ ++ + +L G R + S+ +N++SSRSHC+ I ++A +
Sbjct: 190 NPQGVF-IKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 248
Query: 461 NLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-KSGH 519
L + SK+ LVDLAGSERL K+ +G+ LKEA IN+SLS L I +L K H
Sbjct: 249 TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDH 308
Query: 520 IPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
IP+R KLTH L+DSLGG+ ++ I L ETLSSL FASR++ V
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 168/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
++ +GYNVCIFAYGQTG GK++TM G Q+ +G+ + E LF +I + + +Y
Sbjct: 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 140
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
S+ VS +E+Y E++RDLL+ P +K L +R+ +V L++ + + ++ D++
Sbjct: 141 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 198
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
G+ AR V + N+NE SSRSH + I K N+ + SK+ LVDLAGSER
Sbjct: 199 GNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 256
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
T +G RLKE NIN+SL+ LG VIS+LA K+ IPYR+S LT LL+
Sbjct: 257 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
++LGG+S+T M +SP++ + ETLS+L +A R + +
Sbjct: 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 167/278 (60%), Gaps = 26/278 (9%)
Query: 315 LVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQ--NRGVNYRTLELLF-KIAEERKETFTY 371
++ +GYNVCIFAYGQTG GK++TM G Q+ +G+ + E LF +I + + +Y
Sbjct: 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSY 140
Query: 372 SISVSALEVYNEQIRDLLDTSPTSK-KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHI 430
S+ VS +E+Y E++RDLL+ P +K L +R+ +V L++ + + ++ D++
Sbjct: 141 SVEVSYMEIYCERVRDLLN--PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDS 198
Query: 431 GSNARAVGSNNVNEHSSRSHCMLCISVKAK------NLINGECTKSKLWLVDLAGSERLA 484
G+ R V + N+NE SSRSH + I K N+ + SK+ LVDLAGSER
Sbjct: 199 GNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV--SKISLVDLAGSERAD 256
Query: 485 KTEVQGERLKEAQNINRSLSALGDVISSLA------------TKSGHIPYRNSKLTHLLQ 532
T +G RLKE NIN+SL+ LG VIS+LA K+ IPYR+S LT LL+
Sbjct: 257 STGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Query: 533 DSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGV 570
++LGG+S+T M +SP++ + ETLS+L +A R + +
Sbjct: 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 156/269 (57%), Gaps = 7/269 (2%)
Query: 307 DVFADA-SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER 365
D++A + P++ +L+G N + AYG TG GKT TM G+ + GV R L L ++ E
Sbjct: 81 DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREE 140
Query: 366 K---ETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIK 422
+ S+++S LE+Y E++ DLLD P S L IR+ G +PGL++ I +
Sbjct: 141 GAEGRPWALSVTMSYLEIYQEKVLDLLD--PASGDLVIREDCRGNILIPGLSQKPISSFA 198
Query: 423 EVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-NLINGECTKSKLWLVDLAGSE 481
+ S R VG+ +N+ SSRSH +L + V + L + KL+L+DLAGSE
Sbjct: 199 DFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSE 258
Query: 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKT 541
+T +G RLKE+ IN SL LG V+ +L +PYR+SKLT LLQDSLGG + +
Sbjct: 259 DNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHS 318
Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGV 570
++ I+P + +T+S+LNFA+R + V
Sbjct: 319 ILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 181/344 (52%), Gaps = 29/344 (8%)
Query: 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK------DGELGI----------LTVDVFA 310
G + V R RPL+ E S G V + DG T +V+
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYE 63
Query: 311 D-ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLF-KIAEERKET 368
+ A+P++ S + GYN IFAYGQT +GKT+TM G++ + GV R + +F KI +
Sbjct: 64 EIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDRE 123
Query: 369 FTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVL 428
F + VS +E+YNE I DLL + K L IR+ +V LTE + + +
Sbjct: 124 FL--LRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWI 181
Query: 429 HIGSNARAVGSNNVNEHSSRSHCMLCISVKAK-----NLINGECTKSKLWLVDLAGSERL 483
G +R G +N+ SSRSH + + ++++ + G S L LVDLAGSER
Sbjct: 182 TKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERA 241
Query: 484 AKTEVQGERLKEAQNINRSLSALGDVISSLATK--SGHIPYRNSKLTHLLQDSLGGDSKT 541
A+T G RLKE NINRSL LG VI L+ G I YR+SKLT +LQ+SLGG++KT
Sbjct: 242 AQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKT 301
Query: 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQ 585
+ I+P D ETL++L FAS + ++ +P ++ +L+
Sbjct: 302 RIICTITPVSFD--ETLTALQFASTAKYMKNTPYVNEVSTDELE 343
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 143/276 (51%), Gaps = 27/276 (9%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNY---------RTLELLFKIA 362
A PLV ++ +G FAYGQTG+GKT TM G + N R + LL
Sbjct: 123 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQP 182
Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVP--GLTEAKIEN 420
RK + V+ E+YN ++ DLL+ KK ++R +G V GL E + +
Sbjct: 183 CYRK--LGLEVYVTFFEIYNGKLFDLLN-----KKAKLRVLEDGKQQVQVVGLQEHLVNS 235
Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
+V ++ +GS R G N +SSRSH I ++AK ++G K LVDLAG+
Sbjct: 236 ADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFSLVDLAGN 290
Query: 481 ERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGD 538
ER A T + + E IN+SL AL + I +L H P+R SKLT +L+DS +G +
Sbjct: 291 ERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGEN 350
Query: 539 SKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSP 574
S+T M ISP TL++L +A RV+ ELSP
Sbjct: 351 SRTCMIATISPGISSCEYTLNTLRYADRVK--ELSP 384
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 17/266 (6%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM----EGTQQN--RGVNYRTLELLFKIAEE- 364
A PLV ++ +G FAYGQTG+GKT TM G QN +G+ +F + +
Sbjct: 143 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQP 202
Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
R + V+ E+YN ++ DLL+ KL + + S V GL E + +V
Sbjct: 203 RYRNLNLEVYVTFFEIYNGKVFDLLNKKA---KLRVLEDSRQQVQVVGLQEYLVTCADDV 259
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
++++GS R G N +SSRSH I ++ K ++G K LVDLAG+ER A
Sbjct: 260 IKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFSLVDLAGNERGA 314
Query: 485 KTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTL 542
T + + E IN+SL AL + I +L H P+R SKLT +L+DS +G +S+T
Sbjct: 315 DTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 374
Query: 543 MFLQISPSEQDLGETLSSLNFASRVR 568
M ISP TL++L +A RV+
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 19/271 (7%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM----EGTQQN--RGVNYRTLELLFKIAEE- 364
A PLV ++ +G FAYGQTG+GKT TM G QN +G+ +F + +
Sbjct: 71 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQP 130
Query: 365 RKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEV 424
R + V+ E+YN ++ DLL+ KL + + S V GL E + +V
Sbjct: 131 RYRNLNLEVYVTFFEIYNGKVFDLLNKKA---KLRVLEDSRQQVQVVGLQEYLVTCADDV 187
Query: 425 WDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLA 484
++++GS R G N +SSRSH I ++ K ++G K LVDLAG+ER A
Sbjct: 188 IKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFSLVDLAGNERGA 242
Query: 485 KTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGDSKTL 542
T + + E IN+SL AL + I +L H P+R SKLT +L+DS +G +S+T
Sbjct: 243 DTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 302
Query: 543 MFLQISPSEQDLGETLSSLNFASRVRGVELS 573
M ISP TL++L +A RV+ ELS
Sbjct: 303 MIAMISPGISSCEYTLNTLRYADRVK--ELS 331
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 140/267 (52%), Gaps = 22/267 (8%)
Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKE 367
PLV +L+G+ AYGQTGTGK+++M T ++ G+ R L +F+ R+E
Sbjct: 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE 144
Query: 368 TFTYSISVSA--LEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
+I V A +E+YNE+ DLL ++P + R T + + ++
Sbjct: 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQR--------CTCLPLHSQADLH 196
Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
+L +G+ R V N+N +SSRSH ++ I VK+K S++ +VDLAGSE + +
Sbjct: 197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRR 250
Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
T +G +E NIN L ++ V+ S+A IPYR+S LT +LQ SL S
Sbjct: 251 TGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310
Query: 546 QISPSEQDLGETLSSLNFASRVRGVEL 572
ISP + DL ETLS+L F + + L
Sbjct: 311 CISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 25/270 (9%)
Query: 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNR---------GVNYRTLELLFKIA 362
A PLV ++ + FAYGQTG+GKT TM G + + R + L+ K
Sbjct: 161 ARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKP 220
Query: 363 EERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVP--GLTEAKIEN 420
+K + + E+Y+ ++ DLL+ +K ++R +G V GL E +++
Sbjct: 221 NYKK--LELQVYATFFEIYSGKVFDLLN-----RKTKLRVLEDGKQQVQVVGLQEREVKC 273
Query: 421 IKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGS 480
+++V ++ IG++ R G + N HSSRSH + I ++ K ++G K L+DLAG+
Sbjct: 274 VEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLIDLAGN 328
Query: 481 ERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDS-LGGD 538
ER A T + + E IN+SL AL + I +L H P+R SKLT +L+DS +G +
Sbjct: 329 ERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGEN 388
Query: 539 SKTLMFLQISPSEQDLGETLSSLNFASRVR 568
S+T M ISP TL++L +A+RV+
Sbjct: 389 SRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 22/267 (8%)
Query: 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKE 367
PLV +L+G+ AYGQTGTGK+++M T ++ G+ R L +F+ R+E
Sbjct: 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE 144
Query: 368 TFTYSISVSA--LEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVW 425
+I V A +E+YNE+ DLL ++P + R T + + ++
Sbjct: 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQR--------CTCLPLHSQADLH 196
Query: 426 DVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485
+L +G+ R V N+N +SSRSH ++ I VK+K S++ +VDLAGSE + +
Sbjct: 197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRR 250
Query: 486 TEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFL 545
T +G +E NIN L ++ V+ S+A IPYR+S LT +LQ SL S
Sbjct: 251 TGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310
Query: 546 QISPSEQDLGETLSSLNFASRVRGVEL 572
ISP + DL ETLS+L F + + + L
Sbjct: 311 CISPHQCDLSETLSTLRFGTSAKKLRL 337
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 120/234 (51%), Gaps = 20/234 (8%)
Query: 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDVFADASP------------- 314
+I+V CR RPL++ E G + F + +G VF P
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACA 66
Query: 315 --LVTSVLDGYNVCIFAYGQTGTGKTFTMEG---TQQNRGVNYRTLELLFKIAEERKETF 369
+V VL+GYN IFAYGQT +GKT TMEG Q G+ R +F E
Sbjct: 67 KQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENL 126
Query: 370 TYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLH 429
+ I VS E+Y ++IRDLLD S T+ L + + +V G TE + + +EV DV+
Sbjct: 127 EFHIKVSYFEIYLDKIRDLLDVSKTN--LAVHEDKNRVPYVKGCTERFVSSPEEVMDVID 184
Query: 430 IGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL 483
G R V N+NEHSSRSH + I++K +N+ + KL+LVDLAGSE++
Sbjct: 185 EGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 143/275 (52%), Gaps = 17/275 (6%)
Query: 305 TVDVFA----DASPLVTSVLDGYNVC-IFAYGQTGTGKTFTMEGTQ-----QNRGVNYRT 354
TVD F PL+ + + VC FAYGQTG+GKT+TM G+Q G+
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 355 LELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLT 414
+F + T I +S E+Y ++ DLL LE + V L
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEV---VVKDLK 177
Query: 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWL 474
++ +E+ + G R +G N+ N+ SSRSH +L I +K IN + K+
Sbjct: 178 ILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTSLGKIAF 234
Query: 475 VDLAGSERLAKTEVQGERLK-EAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQD 533
+DLAGSER A T Q ++ + + NINRSL AL + I ++ + HIP+R+S+LT +L+D
Sbjct: 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRD 294
Query: 534 SLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVR 568
G SK++M ISP+ +TL++L ++SRV+
Sbjct: 295 IFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 496 AQNINRSLSALGDVISSLA--TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQD 553
A+NIN+SLSALG+VIS+LA TK+ H+PYR+SK+T +LQDSL G+ +T + + SPS +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 554 LGETLSSLNFASRVRGVE 571
ET S+L F R + ++
Sbjct: 60 EAETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 500 NRSLSALGDVISSLA--TKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGET 557
N+SLSALG+VIS+LA TK+ H+PYR+SK+T +LQDSLGG+ +T + + SPS + ET
Sbjct: 1 NKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAET 59
Query: 558 LSSLNFASRVRGVE 571
S+L F R + ++
Sbjct: 60 KSTLMFGQRAKTIK 73
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 3 VLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEID 60
VLYQ+ R+ +F Y I G+Y++ L FAE+ A + +VFDV + V+ ++D
Sbjct: 59 VLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQQ--KVFDVRVNGHTVVKDLD 116
Query: 61 IYSIVG 66
I+ VG
Sbjct: 117 IFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 3 VLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEID 60
VLYQ+ R+ +F Y I G+Y++ L FAE+ A + +VFDV + V+ ++D
Sbjct: 55 VLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQQ--KVFDVRVNGHTVVKDLD 112
Query: 61 IYSIVG 66
I+ VG
Sbjct: 113 IFDRVG 118
>pdb|3GMX|B Chain B, Crystal Structure Of Beta-Lactamse Inhibitory Protein-Like
Protein (Blp) At 1.05 Angstrom Resolution
pdb|3GMX|A Chain A, Crystal Structure Of Beta-Lactamse Inhibitory Protein-Like
Protein (Blp) At 1.05 Angstrom Resolution
Length = 154
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 77 RVSVGMDEVLLIRFDGA---CGSPIVNGICIKNATNVPESLGDHGHLICNGCGT-----E 128
++ GMD L+ + GA C + IC N P+ G GH N +
Sbjct: 11 KIQFGMDRTLVWQLAGADQSCSDQVERIICYNN----PDHYGPQGHFFFNAADKLIHKRQ 66
Query: 129 IEITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDEC 165
+E+ PA MR+ + K + + E + + +D C
Sbjct: 67 MELFPAPKPTMRLATYNKTQTGMTEAQFWAAVPSDTC 103
>pdb|4HL0|A Chain A, Crystal Structure Of Full-length Toxascaris Leonina
Galectin
pdb|4HL0|B Chain B, Crystal Structure Of Full-length Toxascaris Leonina
Galectin
Length = 278
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 658 SEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRL 705
S+G GKEE SN +K +++ +++ HD +++ +V+E E+R+
Sbjct: 73 SKGEWGKEERKSNPYKKGDDIDIRIRAHDSKFSISVDQKEVKEYEHRV 120
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVI 605
QI+P + +++ +L + +L+ AR+ + +K M KTK+ V SK +
Sbjct: 431 QIAPP-KTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAV 489
Query: 606 QKLEENFQNLEVKA 619
Q+LEE LEV+A
Sbjct: 490 QRLEEQLMKLEVQA 503
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 443 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 502
Query: 617 VKA 619
V+A
Sbjct: 503 VQA 505
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex
Length = 563
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 441 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 500
Query: 617 VKA 619
V+A
Sbjct: 501 VQA 503
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22
Base Pair Dna Duplex
pdb|1K4T|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Topotecan And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1SC7|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Mj-Ii-38 And Covalent Complex With A
22 Base Pair Dna Duplex
pdb|1T8I|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Camptothecin And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1TL8|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Ai-Iii-52 And Covalent Complex With A
22 Base Pair Dna Duplex
Length = 592
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 470 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 529
Query: 617 VKA 619
V+A
Sbjct: 530 VQA 532
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 591
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 469 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 528
Query: 617 VKA 619
V+A
Sbjct: 529 VQA 531
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 470 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 529
Query: 617 VKA 619
V+A
Sbjct: 530 VQA 532
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indolocarbazole Sa315f And Covalent Complex With A 22
Base Pair Dna Duplex
Length = 592
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 470 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 529
Query: 617 VKA 619
V+A
Sbjct: 530 VQA 532
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 442 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 501
Query: 617 VKA 619
V+A
Sbjct: 502 VQA 504
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 469 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 528
Query: 617 VKA 619
V+A
Sbjct: 529 VQA 531
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 559 SSLNFASRV--RGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616
S +N +++ + +L+ AR+ + +K M KTK+ V SK +Q+LEE LE
Sbjct: 443 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 502
Query: 617 VKA 619
V+A
Sbjct: 503 VQA 505
>pdb|2JBR|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBS|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
Length = 422
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 11 GNFSYRIGNLSPGDY-LVDLHFAEIVNANGPKGMRVFDVFMQEEKV 55
GN Y G + DY +VD +A+ + ++G K +++ +VF+ E ++
Sbjct: 190 GNKIYSFGVIPRSDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRI 235
>pdb|3B8U|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
pdb|3B8U|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
pdb|3B8U|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
pdb|3B8U|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
Length = 379
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 525 SKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKL 584
++L L+ GG +K ++ L+ +DL T+S+ +F + V E A ++ + +
Sbjct: 78 ARLEEALRLRAGGITKPVLLLEGFFDARDL-PTISAQHFHTAVHNEEQLAALEEASLDEP 136
Query: 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT 644
V M L+ +G + ++ E + L CKN ++ +N + +
Sbjct: 137 VTVWMXLDTGMHRLGVRP---EQAEAFYHRL--------TQCKNVRQPVNIVSHFARADE 185
Query: 645 QLCRQLEKQLL---QVSEGMKGKEEICSN 670
C EKQL EG G+ I ++
Sbjct: 186 PKCGATEKQLAIFNTFCEGKPGQRSIAAS 214
>pdb|3B8W|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
pdb|3B8W|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
pdb|3B8W|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
pdb|3B8W|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
Length = 379
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 525 SKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKL 584
++L L+ GG +K ++ L+ +DL T+S+ +F + V E A ++ + +
Sbjct: 78 ARLEEALRLRAGGITKPVLLLEGFFDARDL-PTISAQHFHTAVHNEEQLAALEEASLDEP 136
Query: 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT 644
V M L+ +G + ++ E + L CKN ++ +N + +
Sbjct: 137 VTVWMXLDTGMHRLGVRP---EQAEAFYHRL--------TQCKNVRQPVNIVSHFARADE 185
Query: 645 QLCRQLEKQLL---QVSEGMKGKEEICSN 670
C EKQL EG G+ I ++
Sbjct: 186 PKCGATEKQLAIFNTFCEGKPGQRSIAAS 214
>pdb|2RJG|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJG|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJG|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJG|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJH|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
pdb|2RJH|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
pdb|2RJH|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
pdb|2RJH|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
Length = 379
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 525 SKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKL 584
++L L+ GG +K ++ L+ +DL T+S+ +F + V E A ++ + +
Sbjct: 78 ARLEEALRLRAGGITKPVLLLEGFFDARDL-PTISAQHFHTAVHNEEQLAALEEASLDEP 136
Query: 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT 644
V M L+ +G + ++ E + L CKN ++ +N + +
Sbjct: 137 VTVWMXLDTGMHRLGVRP---EQAEAFYHRL--------TQCKNVRQPVNIVSHFARADE 185
Query: 645 QLCRQLEKQLL---QVSEGMKGKEEICSN 670
C EKQL EG G+ I ++
Sbjct: 186 PKCGATEKQLAIFNTFCEGKPGQRSIAAS 214
>pdb|3B8V|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
pdb|3B8V|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
pdb|3B8V|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
pdb|3B8V|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
Length = 379
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 525 SKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKL 584
++L L+ GG +K ++ L+ +DL T+S+ +F + V E A ++ + +
Sbjct: 78 ARLEEALRLRAGGITKPVLLLEGFFDARDL-PTISAQHFHTAVHNEEQLAALEEASLDEP 136
Query: 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT 644
V M L+ +G + ++ E + L CKN ++ +N + +
Sbjct: 137 VTVWMXLDTGMHRLGVRP---EQAEAFYHRL--------TQCKNVRQPVNIVSHFARADE 185
Query: 645 QLCRQLEKQLL---QVSEGMKGKEEICSN 670
C EKQL EG G+ I ++
Sbjct: 186 PKCGATEKQLAIFNTFCEGKPGQRSIAAS 214
>pdb|3B8T|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
pdb|3B8T|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
pdb|3B8T|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
pdb|3B8T|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
Length = 379
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 525 SKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISKL 584
++L L+ GG +K ++ L+ +DL T+S+ +F + V E A ++ + +
Sbjct: 78 ARLEEALRLRAGGITKPVLLLEGFFDARDL-PTISAQHFHTAVHNEEQLAALEEASLDEP 136
Query: 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT 644
V M L+ +G + ++ E + L CKN ++ +N + +
Sbjct: 137 VTVWMXLDTGMHRLGVRP---EQAEAFYHRL--------TQCKNVRQPVNIVSHFARADE 185
Query: 645 QLCRQLEKQLL---QVSEGMKGKEEICSN 670
C EKQL EG G+ I ++
Sbjct: 186 PKCGATEKQLAIFNTFCEGKPGQRSIAAS 214
>pdb|3K75|D Chain D, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
pdb|3K75|E Chain E, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
Length = 252
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 554 LGETLSSLNFASRVRGVELSPARKQID 580
+ +T SS+NF +RV G+ S ARK +D
Sbjct: 1 MDDTSSSINFLTRVTGIGPSAARKLVD 27
>pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And
Dtmp(Cf2)pp
Length = 326
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 556 ETLSSLNFASRVRGVELSPARKQID 580
+T SS+NF +RV G+ S ARK +D
Sbjct: 83 DTSSSINFLTRVSGIGPSAARKFVD 107
>pdb|4F5N|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
Metal Free Dctp Analog
pdb|4F5O|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
One Metal Bound Dctp Analog
pdb|4F5P|A Chain A, Open Ternary Mismatch Complex Of R283k Dna Polymerase Beta
With A Datp Analog
pdb|4F5Q|A Chain A, Closed Ternary Complex Of R283k Dna Polymerase Beta
pdb|4F5R|A Chain A, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
pdb|4F5R|B Chain B, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
pdb|4GXI|A Chain A, R283k Dna Polymerase Beta Binary Complex With A Templating
8og
pdb|4GXJ|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Dctp Analog
pdb|4GXK|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Datp Analog
Length = 335
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 556 ETLSSLNFASRVRGVELSPARKQID 580
+T SS+NF +RV G+ S ARK +D
Sbjct: 92 DTSSSINFLTRVSGIGPSAARKFVD 116
>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase
20beta-Hydroxysteroid Dehydrogenase
Length = 288
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 30/152 (19%)
Query: 572 LSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQE 631
LSP Q+DI LQ ++ + + ++E G D ++ F
Sbjct: 54 LSPRFHQLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAF------------------- 94
Query: 632 KINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENV 691
QL++ T Q E L + G +C+ + +K + ++ +E V
Sbjct: 95 -------QLDNPTPFHIQAE---LTMKTNFMGTRNVCTELLPLIKP-QGRVVNVSSTEGV 143
Query: 692 TALHHKVRELENRLKARTQEFEVHSGMLQQKI 723
AL+ EL+ + K+ T E G++ + +
Sbjct: 144 RALNECSPELQQKFKSETITEEELVGLMNKFV 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,404,503
Number of Sequences: 62578
Number of extensions: 925197
Number of successful extensions: 3106
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2751
Number of HSP's gapped (non-prelim): 208
length of query: 860
length of database: 14,973,337
effective HSP length: 107
effective length of query: 753
effective length of database: 8,277,491
effective search space: 6232950723
effective search space used: 6232950723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)