Query 037169
Match_columns 860
No_of_seqs 656 out of 3119
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 5E-86 1.1E-90 779.8 38.7 331 267-599 49-428 (1041)
2 KOG0239 Kinesin (KAR3 subfamil 100.0 6.5E-85 1.4E-89 767.0 33.7 456 141-596 174-666 (670)
3 KOG4280 Kinesin-like protein [ 100.0 3.6E-82 7.8E-87 721.3 20.4 333 267-600 5-367 (574)
4 KOG0245 Kinesin-like protein [ 100.0 4.1E-81 8.8E-86 724.1 25.2 334 266-599 3-378 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 7.2E-79 1.6E-83 676.9 36.6 312 265-578 5-339 (607)
6 PLN03188 kinesin-12 family pro 100.0 2.3E-76 5E-81 703.1 28.7 329 266-598 97-462 (1320)
7 cd01370 KISc_KIP3_like Kinesin 100.0 1.1E-75 2.5E-80 649.4 27.8 301 268-570 1-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 7.5E-75 1.6E-79 642.6 28.1 302 267-570 1-337 (337)
9 KOG0242 Kinesin-like protein [ 100.0 3.1E-74 6.6E-79 679.1 26.2 310 267-580 6-341 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 4E-73 8.6E-78 630.5 27.4 295 268-568 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.9E-72 4.2E-77 627.9 29.6 310 267-576 1-355 (356)
12 KOG0241 Kinesin-like protein [ 100.0 2.2E-72 4.7E-77 639.0 29.7 373 267-642 4-422 (1714)
13 cd01367 KISc_KIF2_like Kinesin 100.0 1.7E-71 3.8E-76 612.3 26.6 294 267-568 1-322 (322)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1E-70 2.2E-75 613.3 29.5 310 267-578 2-351 (352)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 3.4E-70 7.4E-75 604.7 29.1 301 268-570 2-333 (333)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.6E-70 7.7E-75 602.7 28.6 302 267-570 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 4.6E-70 9.9E-75 600.4 26.8 293 268-568 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 7.7E-70 1.7E-74 603.7 28.7 304 268-571 2-341 (341)
19 cd01366 KISc_C_terminal Kinesi 100.0 2E-69 4.4E-74 597.6 29.2 307 266-573 1-329 (329)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 3.1E-69 6.7E-74 594.3 27.4 298 268-570 1-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 100.0 6.7E-69 1.4E-73 594.5 26.1 299 268-568 1-334 (334)
22 KOG0247 Kinesin-like protein [ 100.0 1.8E-68 3.8E-73 606.1 27.7 309 266-574 30-440 (809)
23 smart00129 KISc Kinesin motor, 100.0 4.7E-66 1E-70 572.0 29.0 307 268-576 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1.3E-65 2.8E-70 568.2 22.3 297 274-570 1-335 (335)
25 cd00106 KISc Kinesin motor dom 100.0 1.1E-64 2.4E-69 559.2 28.6 300 268-568 1-328 (328)
26 KOG0246 Kinesin-like protein [ 100.0 5.7E-63 1.2E-67 547.6 23.4 303 267-575 208-546 (676)
27 KOG0244 Kinesin-like protein [ 100.0 2E-63 4.3E-68 580.1 18.8 323 275-599 1-347 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 5.2E-57 1.1E-61 528.2 30.9 331 265-597 20-365 (568)
29 cd01363 Motor_domain Myosin an 100.0 4E-51 8.7E-56 417.1 16.7 176 308-549 8-186 (186)
30 PF11721 Malectin: Di-glucose 99.8 6.7E-21 1.4E-25 192.9 8.7 98 2-102 56-174 (174)
31 PLN03150 hypothetical protein; 99.5 2.1E-14 4.6E-19 172.1 12.4 106 3-111 253-366 (623)
32 PF12819 Malectin_like: Carboh 99.2 4.5E-11 9.8E-16 133.9 9.9 102 3-107 235-347 (347)
33 PLN03150 hypothetical protein; 98.8 2.1E-08 4.5E-13 120.8 11.9 101 2-111 66-177 (623)
34 KOG3593 Predicted receptor-lik 98.7 4E-09 8.8E-14 111.3 2.7 109 3-113 109-234 (355)
35 COG5059 KIP1 Kinesin-like prot 98.5 5.7E-10 1.2E-14 132.2 -14.4 247 257-514 295-566 (568)
36 PF12819 Malectin_like: Carboh 98.4 1.3E-06 2.9E-11 98.1 11.6 107 2-113 48-167 (347)
37 KOG0250 DNA repair protein RAD 97.8 0.18 4E-06 63.0 38.5 105 144-248 318-426 (1074)
38 COG1196 Smc Chromosome segrega 97.1 0.55 1.2E-05 61.4 33.6 46 638-683 814-859 (1163)
39 PF10473 CENP-F_leu_zip: Leuci 96.9 0.094 2E-06 51.7 18.0 130 589-727 10-139 (140)
40 PRK11637 AmiB activator; Provi 96.5 0.64 1.4E-05 54.0 24.2 10 585-594 50-59 (428)
41 KOG0996 Structural maintenance 96.4 2.4 5.1E-05 53.8 28.9 56 628-683 862-924 (1293)
42 PF12718 Tropomyosin_1: Tropom 96.3 0.39 8.4E-06 47.6 18.4 80 600-683 11-90 (143)
43 PF09726 Macoilin: Transmembra 96.3 0.16 3.4E-06 62.4 18.4 107 629-737 486-610 (697)
44 PF07888 CALCOCO1: Calcium bin 96.0 0.81 1.8E-05 54.2 21.9 13 470-482 90-102 (546)
45 PF09726 Macoilin: Transmembra 96.0 0.42 9.1E-06 58.8 20.0 109 643-751 543-661 (697)
46 COG1579 Zn-ribbon protein, pos 95.9 1.4 3E-05 47.3 21.3 79 647-734 91-169 (239)
47 COG1579 Zn-ribbon protein, pos 95.7 0.88 1.9E-05 48.8 18.8 35 694-728 122-156 (239)
48 TIGR02169 SMC_prok_A chromosom 95.6 0.81 1.8E-05 59.3 21.9 14 328-341 27-40 (1164)
49 KOG0804 Cytoplasmic Zn-finger 95.6 0.48 1E-05 54.2 16.9 96 648-743 364-465 (493)
50 PF00261 Tropomyosin: Tropomyo 95.5 0.98 2.1E-05 48.4 18.6 19 716-734 199-217 (237)
51 TIGR02169 SMC_prok_A chromosom 95.5 0.91 2E-05 58.8 21.7 6 422-427 120-125 (1164)
52 KOG4673 Transcription factor T 95.4 0.79 1.7E-05 54.7 18.3 132 546-684 399-534 (961)
53 PRK09039 hypothetical protein; 95.4 1.1 2.4E-05 50.7 19.4 17 544-563 12-28 (343)
54 KOG0161 Myosin class II heavy 95.4 1.2 2.7E-05 59.8 22.0 45 693-737 1094-1141(1930)
55 PRK11637 AmiB activator; Provi 95.4 1.3 2.9E-05 51.4 20.5 16 722-737 220-235 (428)
56 PF00038 Filament: Intermediat 95.2 3.9 8.4E-05 45.3 22.6 68 668-737 211-278 (312)
57 KOG4673 Transcription factor T 94.9 2.1 4.5E-05 51.3 19.7 46 692-737 615-660 (961)
58 TIGR02168 SMC_prok_B chromosom 94.9 1.9 4E-05 55.8 21.9 10 723-732 896-905 (1179)
59 KOG1029 Endocytic adaptor prot 94.8 2.1 4.6E-05 51.9 19.6 33 656-688 532-564 (1118)
60 PF12718 Tropomyosin_1: Tropom 94.8 1.9 4.1E-05 42.8 16.6 26 658-683 79-104 (143)
61 PF07888 CALCOCO1: Calcium bin 94.4 3.8 8.2E-05 48.8 20.6 29 633-661 208-236 (546)
62 PHA02562 46 endonuclease subun 94.4 4 8.6E-05 48.9 21.7 17 325-341 28-44 (562)
63 KOG0161 Myosin class II heavy 94.3 2.4 5.2E-05 57.2 20.7 18 668-685 1092-1109(1930)
64 PF13851 GAS: Growth-arrest sp 94.0 5.7 0.00012 41.7 19.1 36 703-738 132-167 (201)
65 COG1196 Smc Chromosome segrega 93.9 3.6 7.9E-05 53.9 21.4 10 97-106 112-121 (1163)
66 KOG0239 Kinesin (KAR3 subfamil 93.9 0.073 1.6E-06 64.9 5.6 68 309-391 44-111 (670)
67 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.8 7.2 0.00016 38.0 18.2 34 704-737 95-128 (132)
68 PHA02562 46 endonuclease subun 93.6 5.2 0.00011 47.9 20.6 14 718-731 383-396 (562)
69 PRK09039 hypothetical protein; 93.5 6.3 0.00014 44.7 19.7 28 627-654 77-104 (343)
70 PF14662 CCDC155: Coiled-coil 93.5 11 0.00024 39.1 20.0 14 717-730 175-188 (193)
71 smart00787 Spc7 Spc7 kinetocho 93.4 6 0.00013 44.3 19.1 35 700-734 250-284 (312)
72 COG0556 UvrB Helicase subunit 93.4 0.069 1.5E-06 62.3 3.9 74 312-386 21-101 (663)
73 PF08317 Spc7: Spc7 kinetochor 93.3 4.5 9.9E-05 45.4 18.1 7 530-536 105-111 (325)
74 PRK02224 chromosome segregatio 93.1 6.5 0.00014 49.9 21.3 12 66-77 64-75 (880)
75 KOG1029 Endocytic adaptor prot 93.1 2.3 5E-05 51.6 15.7 15 200-214 50-64 (1118)
76 KOG1853 LIS1-interacting prote 93.0 15 0.00033 39.5 21.2 126 607-736 49-186 (333)
77 PF08317 Spc7: Spc7 kinetochor 93.0 5.6 0.00012 44.7 18.3 8 506-513 56-63 (325)
78 KOG0804 Cytoplasmic Zn-finger 93.0 3.7 8.1E-05 47.2 16.5 12 448-459 147-158 (493)
79 PRK03918 chromosome segregatio 93.0 9 0.0002 48.5 22.3 17 322-341 24-40 (880)
80 KOG0250 DNA repair protein RAD 92.7 6.3 0.00014 50.0 19.4 20 322-342 61-80 (1074)
81 KOG0977 Nuclear envelope prote 92.6 5.2 0.00011 47.7 17.8 77 583-659 114-190 (546)
82 PF15619 Lebercilin: Ciliary p 92.6 15 0.00032 38.4 21.3 67 668-736 120-193 (194)
83 PF05667 DUF812: Protein of un 92.4 7 0.00015 47.5 19.0 23 715-737 448-470 (594)
84 COG4942 Membrane-bound metallo 92.3 18 0.00039 42.0 21.0 8 543-550 25-32 (420)
85 PF14662 CCDC155: Coiled-coil 92.3 16 0.00035 38.0 19.4 21 717-737 168-188 (193)
86 COG4942 Membrane-bound metallo 92.2 27 0.00059 40.5 22.8 36 584-619 40-75 (420)
87 PRK04778 septation ring format 92.2 16 0.00034 44.4 21.8 14 141-154 28-41 (569)
88 KOG0971 Microtubule-associated 92.1 9.3 0.0002 47.5 19.1 9 808-816 611-619 (1243)
89 smart00787 Spc7 Spc7 kinetocho 92.1 8.1 0.00018 43.3 17.8 26 718-744 250-275 (312)
90 COG2805 PilT Tfp pilus assembl 92.0 0.084 1.8E-06 58.0 2.0 29 313-341 114-142 (353)
91 PRK03918 chromosome segregatio 91.8 15 0.00033 46.5 22.2 6 423-428 112-117 (880)
92 KOG0996 Structural maintenance 91.5 54 0.0012 42.4 38.2 23 579-601 855-877 (1293)
93 TIGR01242 26Sp45 26S proteasom 91.5 0.36 7.7E-06 54.8 6.5 17 325-341 157-173 (364)
94 COG2804 PulE Type II secretory 91.5 0.17 3.7E-06 59.2 3.9 31 312-342 246-276 (500)
95 PRK04863 mukB cell division pr 91.4 13 0.00028 49.9 21.2 18 325-342 28-45 (1486)
96 PF05667 DUF812: Protein of un 91.4 11 0.00025 45.7 19.2 18 583-600 329-346 (594)
97 KOG0994 Extracellular matrix g 91.4 14 0.0003 47.1 19.7 20 496-515 1517-1536(1758)
98 PF15619 Lebercilin: Ciliary p 91.4 21 0.00045 37.4 20.7 21 695-715 138-158 (194)
99 PRK04863 mukB cell division pr 91.3 14 0.00031 49.5 21.4 10 526-535 212-221 (1486)
100 PF13851 GAS: Growth-arrest sp 91.3 21 0.00046 37.4 20.1 17 583-599 28-44 (201)
101 KOG0971 Microtubule-associated 91.3 16 0.00035 45.5 19.8 12 345-356 61-72 (1243)
102 PF06818 Fez1: Fez1; InterPro 91.1 21 0.00046 37.5 18.3 49 582-630 10-58 (202)
103 KOG0995 Centromere-associated 91.0 12 0.00026 44.5 18.1 45 642-686 284-328 (581)
104 PF00038 Filament: Intermediat 91.0 9.7 0.00021 42.1 17.1 29 630-658 53-81 (312)
105 PRK06835 DNA replication prote 90.8 0.46 1E-05 53.4 6.5 41 146-186 12-52 (329)
106 COG4372 Uncharacterized protei 90.8 24 0.00053 40.1 19.3 14 502-515 8-21 (499)
107 PRK03992 proteasome-activating 90.3 1 2.2E-05 51.9 8.8 18 324-341 165-182 (389)
108 COG3883 Uncharacterized protei 90.3 25 0.00055 38.4 18.6 61 584-644 40-100 (265)
109 TIGR01843 type_I_hlyD type I s 90.2 39 0.00084 38.6 22.2 28 715-742 247-274 (423)
110 PF15070 GOLGA2L5: Putative go 89.9 32 0.00069 42.2 21.3 13 604-616 51-63 (617)
111 PF11559 ADIP: Afadin- and alp 89.8 16 0.00035 36.2 15.9 21 710-730 129-149 (151)
112 KOG0933 Structural maintenance 89.8 32 0.00069 43.6 20.9 27 413-439 548-574 (1174)
113 PF08614 ATG16: Autophagy prot 89.7 2.1 4.6E-05 44.4 9.9 101 141-245 80-180 (194)
114 COG4372 Uncharacterized protei 89.6 43 0.00093 38.2 24.0 23 717-739 241-263 (499)
115 PRK04778 septation ring format 89.5 18 0.00038 44.0 18.8 58 626-683 378-435 (569)
116 KOG4643 Uncharacterized coiled 89.4 40 0.00086 42.8 21.2 19 722-740 569-587 (1195)
117 PF12128 DUF3584: Protein of u 89.4 28 0.00061 46.1 21.9 80 164-243 250-333 (1201)
118 PF12128 DUF3584: Protein of u 89.3 22 0.00049 47.0 20.9 12 726-737 776-787 (1201)
119 PF10168 Nup88: Nuclear pore c 89.3 10 0.00022 47.2 16.8 22 717-738 649-670 (717)
120 PF10473 CENP-F_leu_zip: Leuci 89.3 25 0.00053 35.0 18.2 55 629-683 36-90 (140)
121 KOG1899 LAR transmembrane tyro 89.3 6.3 0.00014 47.0 13.9 22 716-737 240-261 (861)
122 KOG0980 Actin-binding protein 88.9 43 0.00093 42.0 20.9 15 147-161 84-98 (980)
123 KOG0977 Nuclear envelope prote 88.8 17 0.00037 43.5 17.3 15 524-538 65-82 (546)
124 TIGR00606 rad50 rad50. This fa 88.7 13 0.00029 49.4 18.4 23 715-737 882-904 (1311)
125 TIGR00606 rad50 rad50. This fa 88.4 26 0.00057 46.8 20.9 37 694-730 914-950 (1311)
126 PTZ00454 26S protease regulato 88.3 1.2 2.6E-05 51.5 7.5 18 324-341 179-196 (398)
127 PF10212 TTKRSYEDQ: Predicted 88.3 46 0.00099 39.6 20.1 94 646-741 421-514 (518)
128 PF11559 ADIP: Afadin- and alp 88.2 18 0.00039 35.9 15.0 75 145-219 48-122 (151)
129 KOG0933 Structural maintenance 88.1 24 0.00053 44.6 18.3 50 636-685 834-883 (1174)
130 PF10174 Cast: RIM-binding pro 87.8 29 0.00062 43.6 19.2 54 164-219 75-128 (775)
131 KOG0976 Rho/Rac1-interacting s 87.6 54 0.0012 40.7 20.2 47 202-248 106-152 (1265)
132 COG1474 CDC6 Cdc6-related prot 87.4 0.66 1.4E-05 53.0 4.7 54 312-380 29-83 (366)
133 KOG0980 Actin-binding protein 87.0 61 0.0013 40.7 20.6 6 586-591 390-395 (980)
134 PF13870 DUF4201: Domain of un 86.6 34 0.00074 34.9 16.2 11 718-728 163-173 (177)
135 PF09730 BicD: Microtubule-ass 86.6 63 0.0014 40.3 20.8 20 694-713 140-159 (717)
136 PF15066 CAGE1: Cancer-associa 86.2 76 0.0016 37.2 20.1 9 556-564 317-325 (527)
137 PLN02939 transferase, transfer 86.0 37 0.00081 43.5 18.9 69 666-734 324-396 (977)
138 PF04012 PspA_IM30: PspA/IM30 85.8 50 0.0011 34.8 18.5 9 726-734 170-178 (221)
139 COG1340 Uncharacterized archae 85.8 59 0.0013 36.1 18.2 12 671-682 112-123 (294)
140 KOG0976 Rho/Rac1-interacting s 85.8 43 0.00094 41.4 18.2 9 470-478 24-32 (1265)
141 PF04156 IncA: IncA protein; 85.5 42 0.0009 34.4 16.4 7 719-725 177-183 (191)
142 PF15070 GOLGA2L5: Putative go 85.4 80 0.0017 38.8 20.9 13 586-598 84-96 (617)
143 PF06785 UPF0242: Uncharacteri 85.0 27 0.00059 39.0 15.0 49 631-679 127-175 (401)
144 PF04111 APG6: Autophagy prote 84.9 14 0.0003 41.5 13.4 24 585-608 12-35 (314)
145 PF10174 Cast: RIM-binding pro 84.8 77 0.0017 39.9 20.7 32 654-685 380-411 (775)
146 PF14073 Cep57_CLD: Centrosome 84.8 51 0.0011 34.0 18.2 99 633-737 59-157 (178)
147 PF12329 TMF_DNA_bd: TATA elem 84.8 8.1 0.00018 34.1 9.1 64 597-660 6-69 (74)
148 COG5185 HEC1 Protein involved 84.8 84 0.0018 36.9 19.1 80 654-733 332-419 (622)
149 KOG0964 Structural maintenance 84.8 41 0.00089 42.6 17.8 21 717-737 477-497 (1200)
150 PF10168 Nup88: Nuclear pore c 84.7 32 0.0007 42.9 17.5 20 410-429 386-405 (717)
151 KOG1003 Actin filament-coating 84.6 55 0.0012 34.2 18.8 19 716-734 167-185 (205)
152 PF06160 EzrA: Septation ring 84.4 1.1E+02 0.0023 37.3 22.3 29 718-746 411-439 (560)
153 PRK06893 DNA replication initi 84.4 0.56 1.2E-05 49.8 2.1 26 317-342 32-57 (229)
154 PF12325 TMF_TATA_bd: TATA ele 84.2 33 0.00071 33.2 13.7 16 698-713 98-113 (120)
155 PF12325 TMF_TATA_bd: TATA ele 84.2 40 0.00086 32.7 14.2 34 583-616 17-50 (120)
156 PF09755 DUF2046: Uncharacteri 84.1 77 0.0017 35.5 19.8 67 668-739 137-203 (310)
157 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.8 45 0.00097 32.5 17.4 11 587-597 8-18 (132)
158 PF10212 TTKRSYEDQ: Predicted 83.7 36 0.00079 40.4 16.3 98 145-242 416-513 (518)
159 PF08581 Tup_N: Tup N-terminal 83.6 20 0.00043 32.2 11.0 49 674-724 26-74 (79)
160 KOG4643 Uncharacterized coiled 83.5 43 0.00094 42.5 17.3 35 587-621 182-216 (1195)
161 KOG0018 Structural maintenance 83.2 72 0.0016 41.0 19.2 28 505-532 541-575 (1141)
162 PRK01156 chromosome segregatio 83.1 78 0.0017 40.5 20.6 16 326-341 25-40 (895)
163 PF04849 HAP1_N: HAP1 N-termin 83.1 64 0.0014 36.1 17.1 52 631-682 213-264 (306)
164 PF04849 HAP1_N: HAP1 N-termin 83.0 79 0.0017 35.4 17.8 47 639-685 207-253 (306)
165 TIGR01843 type_I_hlyD type I s 82.5 81 0.0018 36.0 18.9 18 720-737 245-262 (423)
166 PF15066 CAGE1: Cancer-associa 82.4 1.1E+02 0.0024 36.0 18.9 32 563-594 343-374 (527)
167 PRK11281 hypothetical protein; 82.2 51 0.0011 43.1 18.3 55 629-683 126-180 (1113)
168 cd00046 DEXDc DEAD-like helica 82.1 0.57 1.2E-05 43.3 0.9 17 327-343 3-19 (144)
169 KOG4674 Uncharacterized conser 81.9 1.3E+02 0.0029 41.1 21.8 28 167-194 728-755 (1822)
170 PRK10436 hypothetical protein; 81.8 0.65 1.4E-05 54.6 1.4 28 315-342 209-236 (462)
171 TIGR02533 type_II_gspE general 81.8 1.1 2.3E-05 53.2 3.2 29 314-342 232-260 (486)
172 PRK10929 putative mechanosensi 81.7 68 0.0015 42.0 19.1 24 714-737 215-238 (1109)
173 KOG0995 Centromere-associated 81.6 55 0.0012 39.3 16.7 26 629-654 299-324 (581)
174 TIGR02538 type_IV_pilB type IV 81.5 0.65 1.4E-05 56.0 1.3 28 315-342 307-334 (564)
175 PF13245 AAA_19: Part of AAA d 81.5 0.76 1.7E-05 40.5 1.4 26 316-342 3-28 (76)
176 PF04111 APG6: Autophagy prote 81.2 23 0.00049 39.8 13.2 18 717-734 116-133 (314)
177 PRK10884 SH3 domain-containing 81.1 18 0.00038 38.3 11.5 18 145-162 96-113 (206)
178 KOG4674 Uncharacterized conser 81.0 1.4E+02 0.003 40.9 21.5 15 547-561 627-641 (1822)
179 PF04851 ResIII: Type III rest 80.9 0.79 1.7E-05 45.4 1.4 29 315-343 15-44 (184)
180 cd00009 AAA The AAA+ (ATPases 80.5 0.95 2.1E-05 42.3 1.8 25 317-341 12-36 (151)
181 PRK06620 hypothetical protein; 80.5 0.95 2.1E-05 47.7 1.9 18 325-342 45-62 (214)
182 KOG0994 Extracellular matrix g 80.4 56 0.0012 42.1 16.7 20 718-737 1728-1747(1758)
183 PF10481 CENP-F_N: Cenp-F N-te 80.4 85 0.0018 34.4 16.2 29 655-683 63-91 (307)
184 KOG0243 Kinesin-like protein [ 80.4 1.2E+02 0.0025 39.3 19.8 52 633-684 443-494 (1041)
185 KOG0946 ER-Golgi vesicle-tethe 80.3 84 0.0018 39.2 17.9 10 562-571 583-592 (970)
186 KOG1003 Actin filament-coating 80.3 80 0.0017 33.0 18.2 59 668-726 139-202 (205)
187 COG2433 Uncharacterized conser 80.1 32 0.0007 41.4 14.2 23 348-370 163-185 (652)
188 PRK12704 phosphodiesterase; Pr 80.1 1.4E+02 0.0031 35.9 21.1 10 722-731 174-183 (520)
189 PF00437 T2SE: Type II/IV secr 80.1 1.2 2.6E-05 48.2 2.6 66 267-341 74-144 (270)
190 PF00308 Bac_DnaA: Bacterial d 80.0 0.64 1.4E-05 49.2 0.4 16 326-341 36-51 (219)
191 PF13401 AAA_22: AAA domain; P 79.9 0.62 1.3E-05 43.9 0.3 18 324-341 4-21 (131)
192 PF15397 DUF4618: Domain of un 79.8 1E+02 0.0022 33.8 20.2 42 711-752 204-245 (258)
193 PF09730 BicD: Microtubule-ass 79.7 1.7E+02 0.0038 36.5 21.3 105 604-708 35-140 (717)
194 TIGR01420 pilT_fam pilus retra 79.7 0.95 2.1E-05 51.1 1.7 29 314-342 112-140 (343)
195 PF15254 CCDC14: Coiled-coil d 79.4 1.8E+02 0.0038 36.4 21.7 8 422-429 250-257 (861)
196 PF10186 Atg14: UV radiation r 79.2 1E+02 0.0022 33.5 18.2 14 584-597 22-35 (302)
197 TIGR01005 eps_transp_fam exopo 79.2 1.8E+02 0.0039 36.5 22.3 24 538-561 153-176 (754)
198 PF00769 ERM: Ezrin/radixin/mo 79.2 85 0.0018 34.0 16.3 45 693-737 79-126 (246)
199 cd01131 PilT Pilus retraction 79.2 0.81 1.8E-05 47.5 0.9 19 324-342 1-19 (198)
200 PF00270 DEAD: DEAD/DEAH box h 79.0 1.1 2.3E-05 44.1 1.7 27 314-342 6-32 (169)
201 PRK13894 conjugal transfer ATP 79.0 2 4.3E-05 48.3 3.9 69 267-341 95-165 (319)
202 KOG0612 Rho-associated, coiled 78.9 1.4E+02 0.0029 39.2 19.7 16 257-272 138-153 (1317)
203 PF08581 Tup_N: Tup N-terminal 78.6 26 0.00056 31.5 10.0 69 587-658 2-70 (79)
204 KOG0964 Structural maintenance 78.5 1.8E+02 0.0039 37.3 20.1 26 330-362 31-56 (1200)
205 cd01129 PulE-GspE PulE/GspE Th 78.4 1.8 3.9E-05 47.2 3.3 29 314-342 70-98 (264)
206 PF09755 DUF2046: Uncharacteri 78.1 1.2E+02 0.0027 33.9 21.1 59 669-732 116-174 (310)
207 smart00382 AAA ATPases associa 78.0 0.9 2E-05 41.8 0.8 18 325-342 3-20 (148)
208 PF10498 IFT57: Intra-flagella 78.0 49 0.0011 37.9 14.7 26 336-364 57-82 (359)
209 TIGR02525 plasmid_TraJ plasmid 77.5 1.2 2.6E-05 51.0 1.7 28 314-342 140-167 (372)
210 TIGR03319 YmdA_YtgF conserved 77.4 1.5E+02 0.0033 35.6 19.2 10 722-731 168-177 (514)
211 smart00053 DYNc Dynamin, GTPas 77.3 5.1 0.00011 43.2 6.3 53 418-483 86-138 (240)
212 PF05701 WEMBL: Weak chloropla 77.2 1.7E+02 0.0037 35.3 19.7 48 141-188 33-80 (522)
213 TIGR02524 dot_icm_DotB Dot/Icm 77.2 1.3 2.8E-05 50.5 1.8 25 318-342 128-152 (358)
214 PF10498 IFT57: Intra-flagella 77.1 97 0.0021 35.6 16.7 12 585-596 216-227 (359)
215 PF05911 DUF869: Plant protein 76.9 65 0.0014 40.5 16.3 23 256-278 216-238 (769)
216 KOG1853 LIS1-interacting prote 76.9 53 0.0012 35.5 13.3 98 146-243 49-153 (333)
217 TIGR03007 pepcterm_ChnLen poly 76.8 1E+02 0.0022 36.4 17.7 8 452-459 123-130 (498)
218 PF01935 DUF87: Domain of unkn 76.4 1 2.2E-05 47.3 0.7 15 327-341 26-40 (229)
219 COG2433 Uncharacterized conser 76.3 36 0.00078 41.1 13.1 19 92-110 285-303 (652)
220 PRK10361 DNA recombination pro 76.1 1.8E+02 0.0038 34.7 22.0 37 692-728 143-179 (475)
221 PF05010 TACC: Transforming ac 76.1 1.1E+02 0.0024 32.4 20.9 32 584-615 25-56 (207)
222 TIGR01005 eps_transp_fam exopo 75.8 1.2E+02 0.0026 38.0 18.8 19 497-515 78-96 (754)
223 PF10481 CENP-F_N: Cenp-F N-te 75.7 83 0.0018 34.5 14.5 20 631-650 18-37 (307)
224 PF12846 AAA_10: AAA-like doma 75.7 1.1 2.4E-05 48.2 0.8 19 324-342 1-19 (304)
225 TIGR02680 conserved hypothetic 75.4 1.9E+02 0.0042 39.0 21.2 17 326-342 26-42 (1353)
226 COG5008 PilU Tfp pilus assembl 75.3 1.9 4.2E-05 46.9 2.4 31 312-342 115-145 (375)
227 PRK00106 hypothetical protein; 75.1 2E+02 0.0043 34.8 21.1 11 721-731 188-198 (535)
228 KOG0018 Structural maintenance 74.9 1.4E+02 0.003 38.5 18.1 12 330-341 31-42 (1141)
229 PRK10698 phage shock protein P 74.8 1.2E+02 0.0027 32.3 19.3 17 723-739 168-184 (222)
230 KOG0992 Uncharacterized conser 74.7 1.5E+02 0.0032 35.2 17.1 57 696-752 378-436 (613)
231 PTZ00464 SNF-7-like protein; P 74.7 1.2E+02 0.0026 32.2 20.0 14 724-737 160-173 (211)
232 PF10186 Atg14: UV radiation r 74.6 1.3E+02 0.0029 32.6 19.4 16 722-737 134-149 (302)
233 PF15272 BBP1_C: Spindle pole 74.6 1.2E+02 0.0025 31.9 19.0 68 667-734 83-152 (196)
234 PF10146 zf-C4H2: Zinc finger- 74.5 93 0.002 33.5 14.8 39 646-684 33-71 (230)
235 COG1222 RPT1 ATP-dependent 26S 74.3 9.5 0.00021 43.3 7.5 42 326-367 187-245 (406)
236 PF03422 CBM_6: Carbohydrate b 74.3 59 0.0013 30.5 12.2 86 13-106 34-125 (125)
237 TIGR03007 pepcterm_ChnLen poly 73.5 2E+02 0.0043 34.1 23.5 25 537-561 119-143 (498)
238 PF09738 DUF2051: Double stran 73.5 83 0.0018 35.2 14.6 35 717-752 150-184 (302)
239 PF06785 UPF0242: Uncharacteri 73.3 1.7E+02 0.0036 33.1 16.5 32 648-679 130-161 (401)
240 PRK08727 hypothetical protein; 73.0 1.5 3.2E-05 46.8 0.9 18 325-342 42-59 (233)
241 TIGR00929 VirB4_CagE type IV s 72.9 2.5 5.5E-05 52.8 3.0 18 324-341 434-451 (785)
242 PF00448 SRP54: SRP54-type pro 72.5 1.4 3.1E-05 45.8 0.6 16 326-341 3-18 (196)
243 PF02841 GBP_C: Guanylate-bind 72.2 1.6E+02 0.0035 32.6 16.7 10 716-725 286-295 (297)
244 PF15290 Syntaphilin: Golgi-lo 72.1 89 0.0019 34.4 13.8 9 519-527 10-18 (305)
245 TIGR02338 gimC_beta prefoldin, 72.1 89 0.0019 29.4 12.7 16 693-708 71-86 (110)
246 COG1382 GimC Prefoldin, chaper 72.0 99 0.0022 29.9 13.3 12 694-705 75-86 (119)
247 PRK10865 protein disaggregatio 71.7 17 0.00037 46.3 9.9 17 325-341 599-615 (857)
248 PF07106 TBPIP: Tat binding pr 71.3 20 0.00043 36.3 8.6 58 627-684 75-134 (169)
249 PF13207 AAA_17: AAA domain; P 71.3 1.7 3.7E-05 40.5 0.8 16 326-341 1-16 (121)
250 PF13604 AAA_30: AAA domain; P 71.3 1.9 4.2E-05 44.6 1.3 28 314-341 8-35 (196)
251 PTZ00112 origin recognition co 71.2 1.8 4E-05 54.1 1.2 30 312-341 767-798 (1164)
252 TIGR02680 conserved hypothetic 71.0 3.8E+02 0.0083 36.3 22.5 21 516-536 193-215 (1353)
253 PRK08084 DNA replication initi 70.9 1.7 3.8E-05 46.3 0.8 18 325-342 46-63 (235)
254 PF07889 DUF1664: Protein of u 70.9 65 0.0014 31.5 11.4 45 191-235 78-122 (126)
255 KOG0978 E3 ubiquitin ligase in 70.8 1.6E+02 0.0034 36.7 17.1 24 627-650 520-543 (698)
256 PRK14088 dnaA chromosomal repl 70.5 1.7 3.8E-05 50.8 0.8 19 323-342 130-148 (440)
257 KOG0999 Microtubule-associated 70.5 2.5E+02 0.0053 33.9 17.9 25 765-791 288-312 (772)
258 KOG4360 Uncharacterized coiled 70.3 76 0.0016 37.6 13.6 36 348-385 356-391 (596)
259 PRK06526 transposase; Provisio 70.3 1.5 3.3E-05 47.5 0.2 20 322-343 98-117 (254)
260 KOG2991 Splicing regulator [RN 70.3 1.7E+02 0.0037 31.9 19.0 45 635-679 181-230 (330)
261 PF11932 DUF3450: Protein of u 70.2 1.2E+02 0.0025 32.8 14.7 54 630-683 41-94 (251)
262 PRK05642 DNA replication initi 70.1 2.2 4.7E-05 45.5 1.4 18 325-342 46-63 (234)
263 KOG0963 Transcription factor/C 70.1 2.7E+02 0.0058 34.1 20.0 17 697-713 318-334 (629)
264 PTZ00361 26 proteosome regulat 70.0 11 0.00023 44.3 7.0 16 326-341 219-234 (438)
265 PF07111 HCR: Alpha helical co 69.8 2.8E+02 0.0062 34.4 21.0 76 611-686 515-591 (739)
266 PF13479 AAA_24: AAA domain 69.7 2.2 4.8E-05 44.8 1.3 20 324-343 3-22 (213)
267 TIGR02928 orc1/cdc6 family rep 69.3 2.4 5.3E-05 47.6 1.6 30 312-341 27-57 (365)
268 TIGR03017 EpsF chain length de 69.2 1.5E+02 0.0033 34.3 16.5 18 498-515 74-91 (444)
269 PF06160 EzrA: Septation ring 69.2 2.7E+02 0.0059 33.8 19.0 78 608-685 356-433 (560)
270 PF13863 DUF4200: Domain of un 68.7 1.1E+02 0.0024 29.1 14.6 106 141-253 6-111 (126)
271 KOG0978 E3 ubiquitin ligase in 68.5 3.1E+02 0.0067 34.2 21.2 14 724-737 604-617 (698)
272 TIGR02782 TrbB_P P-type conjug 68.3 2.7 5.8E-05 46.7 1.6 29 312-341 121-149 (299)
273 KOG0946 ER-Golgi vesicle-tethe 68.1 2E+02 0.0044 36.1 17.0 18 741-758 835-852 (970)
274 TIGR03420 DnaA_homol_Hda DnaA 68.0 2.9 6.4E-05 43.5 1.8 21 321-341 35-55 (226)
275 PF05483 SCP-1: Synaptonemal c 67.9 3.1E+02 0.0067 34.0 20.3 42 173-214 109-150 (786)
276 PRK09343 prefoldin subunit bet 67.8 1.2E+02 0.0026 29.2 14.1 13 719-731 97-109 (121)
277 PRK09087 hypothetical protein; 67.8 2.6 5.7E-05 44.8 1.4 20 323-342 43-62 (226)
278 KOG2751 Beclin-like protein [S 67.8 1.6E+02 0.0035 34.4 15.3 27 584-610 145-171 (447)
279 COG0593 DnaA ATPase involved i 67.6 2.1 4.6E-05 49.5 0.7 19 323-342 113-131 (408)
280 PF13086 AAA_11: AAA domain; P 67.4 2.6 5.6E-05 43.3 1.2 26 316-342 10-35 (236)
281 PF01637 Arch_ATPase: Archaeal 67.2 1.7 3.7E-05 44.7 -0.2 28 314-341 10-37 (234)
282 COG5185 HEC1 Protein involved 67.0 2.1E+02 0.0045 33.8 16.0 40 615-654 321-360 (622)
283 KOG0335 ATP-dependent RNA heli 67.0 2.8 6E-05 49.1 1.5 62 316-383 105-189 (482)
284 KOG0612 Rho-associated, coiled 67.0 2.8E+02 0.006 36.5 18.4 6 448-453 336-341 (1317)
285 PF09731 Mitofilin: Mitochondr 66.9 3E+02 0.0064 33.4 21.2 16 716-731 380-395 (582)
286 PF00004 AAA: ATPase family as 66.9 2.3 5E-05 39.8 0.7 15 327-341 1-15 (132)
287 PRK12377 putative replication 66.9 2.5 5.4E-05 45.8 1.0 34 309-343 87-120 (248)
288 PRK08181 transposase; Validate 66.8 2.7 5.7E-05 46.1 1.2 41 321-363 105-150 (269)
289 PF05911 DUF869: Plant protein 66.8 3.5E+02 0.0076 34.3 19.8 40 212-251 123-162 (769)
290 KOG4593 Mitotic checkpoint pro 66.2 3.3E+02 0.0072 33.7 20.5 13 503-515 64-76 (716)
291 PRK13833 conjugal transfer pro 66.0 3.3 7E-05 46.6 1.7 29 312-341 133-161 (323)
292 COG4026 Uncharacterized protei 65.9 45 0.00098 35.4 9.7 45 145-189 131-175 (290)
293 PRK09841 cryptic autophosphory 65.8 3.2E+02 0.0069 34.3 19.2 26 536-561 224-249 (726)
294 PF15254 CCDC14: Coiled-coil d 65.6 2.7E+02 0.0059 34.9 17.4 9 555-563 366-374 (861)
295 COG1340 Uncharacterized archae 65.3 2.3E+02 0.005 31.6 21.0 19 497-515 79-97 (294)
296 PF00901 Orbi_VP5: Orbivirus o 65.2 2.4E+02 0.0052 33.6 16.3 24 696-719 183-206 (508)
297 PF10205 KLRAQ: Predicted coil 65.2 66 0.0014 30.3 9.7 47 630-676 25-71 (102)
298 KOG0728 26S proteasome regulat 64.8 35 0.00076 37.2 8.9 46 223-278 45-90 (404)
299 KOG4360 Uncharacterized coiled 64.8 3.1E+02 0.0066 32.9 19.9 10 496-505 81-90 (596)
300 PF06632 XRCC4: DNA double-str 64.5 2.1E+02 0.0045 32.7 15.6 43 142-184 130-172 (342)
301 KOG2543 Origin recognition com 64.4 2.8 6E-05 47.8 0.8 38 326-383 32-69 (438)
302 smart00487 DEXDc DEAD-like hel 64.2 4.1 9E-05 40.0 1.9 29 314-343 15-43 (201)
303 TIGR02231 conserved hypothetic 64.2 2.3E+02 0.005 33.9 17.0 43 206-248 128-170 (525)
304 PF11932 DUF3450: Protein of u 64.0 2.1E+02 0.0046 30.8 15.7 23 633-655 72-94 (251)
305 PRK14086 dnaA chromosomal repl 64.0 2.1 4.5E-05 52.0 -0.3 20 322-342 313-332 (617)
306 TIGR00631 uvrb excinuclease AB 63.9 6.8 0.00015 48.2 4.1 72 314-386 20-98 (655)
307 PF01695 IstB_IS21: IstB-like 63.9 3.6 7.9E-05 42.1 1.5 19 325-343 48-66 (178)
308 PF02562 PhoH: PhoH-like prote 63.8 4 8.8E-05 42.9 1.8 25 315-341 12-36 (205)
309 PRK08116 hypothetical protein; 63.7 3.1 6.7E-05 45.5 1.0 31 312-342 100-132 (268)
310 COG1201 Lhr Lhr-like helicases 63.3 6.6 0.00014 49.2 3.8 25 315-341 30-54 (814)
311 PF13191 AAA_16: AAA ATPase do 63.3 1.6 3.4E-05 43.6 -1.3 22 320-341 20-41 (185)
312 PF05701 WEMBL: Weak chloropla 63.0 3.4E+02 0.0073 32.7 19.6 52 135-186 33-85 (522)
313 PRK08903 DnaA regulatory inact 62.9 4.5 9.7E-05 42.5 2.0 27 315-341 31-59 (227)
314 TIGR03185 DNA_S_dndD DNA sulfu 62.9 3.7E+02 0.0081 33.2 21.5 15 605-619 400-414 (650)
315 PF03962 Mnd1: Mnd1 family; I 62.8 1.4E+02 0.0029 31.2 12.8 72 97-168 22-95 (188)
316 COG4962 CpaF Flp pilus assembl 62.6 3.6 7.9E-05 46.4 1.3 73 312-390 162-267 (355)
317 PF13671 AAA_33: AAA domain; P 62.6 3.3 7.2E-05 39.6 0.9 16 326-341 1-16 (143)
318 PRK00411 cdc6 cell division co 62.6 4 8.6E-05 46.5 1.7 30 312-341 42-72 (394)
319 PF05483 SCP-1: Synaptonemal c 62.6 3.8E+02 0.0083 33.2 20.3 37 585-621 172-208 (786)
320 PRK12723 flagellar biosynthesi 62.5 3.6 7.7E-05 47.5 1.3 17 325-341 175-191 (388)
321 cd01130 VirB11-like_ATPase Typ 62.4 4.2 9.1E-05 41.6 1.7 30 312-342 14-43 (186)
322 PF09789 DUF2353: Uncharacteri 62.3 2.4E+02 0.0053 31.9 15.3 99 585-685 82-180 (319)
323 PF15035 Rootletin: Ciliary ro 62.1 1.5E+02 0.0033 30.8 12.8 100 141-240 15-130 (182)
324 PF09744 Jnk-SapK_ap_N: JNK_SA 62.1 1.9E+02 0.004 29.4 14.7 18 635-652 61-78 (158)
325 PF10267 Tmemb_cc2: Predicted 62.1 2.5E+02 0.0055 32.7 15.8 74 141-237 3-76 (395)
326 PTZ00424 helicase 45; Provisio 62.1 4.1 8.9E-05 46.4 1.7 26 314-341 57-82 (401)
327 TIGR03346 chaperone_ClpB ATP-d 62.0 72 0.0016 40.7 12.7 18 324-341 595-612 (852)
328 TIGR03185 DNA_S_dndD DNA sulfu 61.9 3.9E+02 0.0084 33.1 19.1 16 326-341 30-45 (650)
329 KOG4809 Rab6 GTPase-interactin 61.9 1.8E+02 0.0038 35.0 14.4 73 144-216 333-405 (654)
330 PRK11281 hypothetical protein; 61.9 4.9E+02 0.011 34.5 20.0 18 717-734 237-254 (1113)
331 PRK06921 hypothetical protein; 61.6 3.6 7.7E-05 44.9 1.0 19 324-342 117-135 (266)
332 PF00910 RNA_helicase: RNA hel 61.4 2.8 6.1E-05 39.0 0.2 26 327-362 1-26 (107)
333 COG4026 Uncharacterized protei 61.4 58 0.0013 34.6 9.6 11 694-704 196-206 (290)
334 TIGR03499 FlhF flagellar biosy 61.4 3.5 7.7E-05 45.3 0.9 17 326-342 196-212 (282)
335 PRK13851 type IV secretion sys 61.2 3.4 7.4E-05 46.9 0.8 30 312-342 151-180 (344)
336 KOG0999 Microtubule-associated 61.1 3.7E+02 0.008 32.5 18.9 16 656-671 174-189 (772)
337 cd00632 Prefoldin_beta Prefold 61.1 1.4E+02 0.0031 27.7 12.4 40 689-732 63-102 (105)
338 cd00268 DEADc DEAD-box helicas 61.0 5.1 0.00011 40.8 2.0 26 314-341 28-53 (203)
339 PRK12402 replication factor C 61.0 4.7 0.0001 44.6 1.8 21 321-341 33-53 (337)
340 PF07724 AAA_2: AAA domain (Cd 60.8 3.8 8.3E-05 41.7 1.0 17 325-341 4-20 (171)
341 TIGR00362 DnaA chromosomal rep 60.6 3.3 7.2E-05 47.7 0.6 16 326-341 138-153 (405)
342 PF09787 Golgin_A5: Golgin sub 60.5 3.7E+02 0.008 32.3 19.7 34 708-741 349-382 (511)
343 PF08172 CASP_C: CASP C termin 60.5 1.2E+02 0.0025 33.1 12.2 52 194-245 78-129 (248)
344 PF01580 FtsK_SpoIIIE: FtsK/Sp 60.3 3.2 7E-05 42.8 0.4 16 326-341 40-55 (205)
345 KOG0240 Kinesin (SMY1 subfamil 60.2 3.9E+02 0.0084 32.5 17.5 9 777-785 569-577 (607)
346 PF07798 DUF1640: Protein of u 60.2 1.8E+02 0.004 29.7 13.2 40 196-235 92-132 (177)
347 PRK07952 DNA replication prote 60.2 3.3 7.1E-05 44.8 0.4 18 325-342 100-117 (244)
348 PF00580 UvrD-helicase: UvrD/R 60.1 3.6 7.9E-05 44.5 0.7 21 322-342 11-31 (315)
349 PRK10869 recombination and rep 60.1 3.9E+02 0.0084 32.5 18.1 18 321-341 22-39 (553)
350 TIGR03015 pepcterm_ATPase puta 60.1 4.7 0.0001 43.1 1.6 28 314-341 33-60 (269)
351 PRK00149 dnaA chromosomal repl 60.0 3.6 7.8E-05 48.2 0.7 19 323-342 148-166 (450)
352 PRK11776 ATP-dependent RNA hel 60.0 4.9 0.00011 47.0 1.8 26 314-341 33-58 (460)
353 PF05384 DegS: Sensor protein 59.9 2E+02 0.0044 29.2 15.1 35 152-186 16-50 (159)
354 PRK08939 primosomal protein Dn 59.8 4.1 8.9E-05 45.4 1.1 19 325-343 157-175 (306)
355 KOG2991 Splicing regulator [RN 59.7 2.1E+02 0.0045 31.3 13.4 21 517-537 92-112 (330)
356 PRK06547 hypothetical protein; 59.5 6.1 0.00013 40.3 2.2 28 314-341 5-32 (172)
357 PRK11519 tyrosine kinase; Prov 59.5 2.6E+02 0.0057 35.0 16.8 24 538-561 226-249 (719)
358 KOG0926 DEAH-box RNA helicase 59.3 13 0.00029 46.0 5.2 36 323-358 270-319 (1172)
359 PF14915 CCDC144C: CCDC144C pr 59.3 2.9E+02 0.0064 30.8 20.3 28 710-737 267-294 (305)
360 PF14915 CCDC144C: CCDC144C pr 59.2 3E+02 0.0064 30.8 20.7 20 718-737 218-237 (305)
361 PRK13900 type IV secretion sys 58.8 4.5 9.7E-05 45.7 1.2 28 313-341 150-177 (332)
362 KOG4809 Rab6 GTPase-interactin 58.8 4E+02 0.0086 32.2 17.6 39 418-458 122-160 (654)
363 TIGR03017 EpsF chain length de 58.7 3.5E+02 0.0075 31.4 21.6 26 536-561 128-153 (444)
364 PF07058 Myosin_HC-like: Myosi 58.5 3.1E+02 0.0066 30.8 15.4 13 719-731 148-160 (351)
365 PRK13764 ATPase; Provisional 58.4 4.8 0.0001 48.9 1.4 27 315-342 249-275 (602)
366 COG1223 Predicted ATPase (AAA+ 58.4 4.4 9.5E-05 44.2 1.0 16 326-341 153-168 (368)
367 PF08172 CASP_C: CASP C termin 58.2 1.3E+02 0.0028 32.8 12.1 31 628-658 3-33 (248)
368 PF09738 DUF2051: Double stran 57.8 1.2E+02 0.0026 34.0 12.0 61 625-685 113-173 (302)
369 PF09789 DUF2353: Uncharacteri 57.8 3.3E+02 0.0071 30.9 16.4 22 716-737 198-219 (319)
370 KOG1899 LAR transmembrane tyro 57.5 2.9E+02 0.0063 33.8 15.3 16 549-564 104-119 (861)
371 PRK11192 ATP-dependent RNA hel 57.4 5.8 0.00013 45.9 1.9 26 314-341 30-55 (434)
372 PF13238 AAA_18: AAA domain; P 57.4 4.3 9.4E-05 37.7 0.7 15 327-341 1-15 (129)
373 PRK14011 prefoldin subunit alp 56.5 2.2E+02 0.0048 28.5 12.7 44 688-731 87-130 (144)
374 PF07794 DUF1633: Protein of u 56.4 1.8E+02 0.0039 34.4 13.1 43 527-569 511-553 (790)
375 KOG0288 WD40 repeat protein Ti 56.4 3.7E+02 0.008 31.4 15.5 10 841-850 279-288 (459)
376 PRK00409 recombination and DNA 56.2 2.4E+02 0.0051 35.9 15.7 18 324-341 327-344 (782)
377 PF03215 Rad17: Rad17 cell cyc 55.9 5.6 0.00012 47.6 1.4 32 310-341 29-62 (519)
378 PF06414 Zeta_toxin: Zeta toxi 55.9 5.6 0.00012 41.1 1.2 20 322-341 13-32 (199)
379 PF07728 AAA_5: AAA domain (dy 55.7 4.4 9.5E-05 38.9 0.4 15 327-341 2-16 (139)
380 KOG1850 Myosin-like coiled-coi 55.3 3.5E+02 0.0076 30.5 21.4 66 664-731 241-309 (391)
381 PRK04837 ATP-dependent RNA hel 55.1 6.6 0.00014 45.4 1.8 26 314-341 37-62 (423)
382 TIGR01000 bacteriocin_acc bact 54.9 4.1E+02 0.009 31.2 18.4 29 715-743 292-320 (457)
383 PRK14722 flhF flagellar biosyn 54.8 5.4 0.00012 45.8 1.0 17 325-341 138-154 (374)
384 PF04642 DUF601: Protein of un 54.6 1.9E+02 0.0042 31.3 12.2 35 537-571 102-143 (311)
385 PRK13873 conjugal transfer ATP 54.5 15 0.00033 46.4 4.9 17 325-341 442-458 (811)
386 TIGR03819 heli_sec_ATPase heli 54.5 12 0.00026 42.5 3.7 71 267-342 124-196 (340)
387 PF07851 TMPIT: TMPIT-like pro 54.4 89 0.0019 35.4 10.3 23 719-741 66-88 (330)
388 PHA00729 NTP-binding motif con 54.4 8.3 0.00018 41.2 2.3 27 315-341 8-34 (226)
389 TIGR02881 spore_V_K stage V sp 54.4 5.2 0.00011 43.2 0.8 16 326-341 44-59 (261)
390 PRK14087 dnaA chromosomal repl 54.3 4.9 0.00011 47.2 0.6 19 323-342 141-159 (450)
391 COG1842 PspA Phage shock prote 54.1 3.1E+02 0.0067 29.5 17.3 9 635-643 96-104 (225)
392 PRK09183 transposase/IS protei 54.0 5.9 0.00013 43.1 1.1 20 321-342 101-120 (259)
393 PRK13729 conjugal transfer pil 53.6 45 0.00097 39.4 8.1 24 714-737 97-120 (475)
394 cd01126 TraG_VirD4 The TraG/Tr 53.5 6.2 0.00014 45.1 1.3 15 327-341 2-16 (384)
395 PF13870 DUF4201: Domain of un 53.4 2.6E+02 0.0056 28.4 19.8 13 719-731 157-169 (177)
396 PRK10590 ATP-dependent RNA hel 53.3 7.8 0.00017 45.4 2.0 26 314-341 30-55 (456)
397 KOG4603 TBP-1 interacting prot 52.7 2.8E+02 0.0061 28.6 12.7 8 555-562 43-50 (201)
398 PF12795 MscS_porin: Mechanose 52.6 3.2E+02 0.0069 29.2 19.0 55 629-683 83-137 (240)
399 KOG4466 Component of histone d 52.5 3.6E+02 0.0079 29.8 14.9 44 700-743 94-138 (291)
400 KOG0727 26S proteasome regulat 52.5 8.9 0.00019 41.6 2.1 43 326-368 191-250 (408)
401 PF12004 DUF3498: Domain of un 52.2 4.7 0.0001 47.7 0.0 18 267-284 62-79 (495)
402 PRK00409 recombination and DNA 51.9 3.7E+02 0.0081 34.2 16.4 12 330-341 213-224 (782)
403 PF15294 Leu_zip: Leucine zipp 51.6 2.4E+02 0.0053 31.2 12.8 91 141-236 131-221 (278)
404 KOG0989 Replication factor C, 51.6 8.5 0.00018 42.9 1.8 28 314-341 46-74 (346)
405 PF10267 Tmemb_cc2: Predicted 51.5 2.7E+02 0.0058 32.5 13.8 34 216-249 41-74 (395)
406 TIGR02903 spore_lon_C ATP-depe 51.5 36 0.00077 41.8 7.3 28 314-341 165-192 (615)
407 PF05673 DUF815: Protein of un 51.4 15 0.00032 39.8 3.6 52 316-389 43-95 (249)
408 PF03962 Mnd1: Mnd1 family; I 51.1 76 0.0017 33.0 8.6 55 203-257 108-162 (188)
409 PF00063 Myosin_head: Myosin h 51.0 5.4 0.00012 49.4 0.2 35 307-341 67-102 (689)
410 KOG2685 Cystoskeletal protein 50.8 2.6E+02 0.0057 32.5 13.3 38 604-641 279-316 (421)
411 PF04912 Dynamitin: Dynamitin 50.7 4.5E+02 0.0097 30.3 18.5 27 545-571 196-222 (388)
412 PF09304 Cortex-I_coil: Cortex 50.7 2.3E+02 0.005 27.0 13.2 13 666-678 58-70 (107)
413 PRK10536 hypothetical protein; 50.5 9.9 0.00022 41.5 2.1 25 315-341 67-91 (262)
414 PLN03094 Substrate binding sub 50.4 4.6E+02 0.0099 30.4 22.8 28 23-55 116-143 (370)
415 KOG4603 TBP-1 interacting prot 50.2 92 0.002 31.9 8.5 33 627-659 82-114 (201)
416 COG0419 SbcC ATPase involved i 50.2 6.8E+02 0.015 32.3 20.9 27 323-349 24-57 (908)
417 COG1219 ClpX ATP-dependent pro 50.1 7.3 0.00016 43.6 1.0 17 324-340 97-113 (408)
418 PF09728 Taxilin: Myosin-like 50.1 4.2E+02 0.009 29.8 20.2 144 585-734 142-299 (309)
419 KOG0652 26S proteasome regulat 49.9 72 0.0016 35.0 8.3 15 326-340 207-221 (424)
420 TIGR01069 mutS2 MutS2 family p 49.9 2.5E+02 0.0055 35.5 14.5 7 536-542 761-767 (771)
421 KOG4593 Mitotic checkpoint pro 49.9 6E+02 0.013 31.6 20.3 31 715-745 276-306 (716)
422 TIGR00348 hsdR type I site-spe 49.8 8.5 0.00018 47.5 1.7 30 312-342 247-281 (667)
423 TIGR01010 BexC_CtrB_KpsE polys 49.5 4.4E+02 0.0095 29.9 19.3 17 498-514 71-87 (362)
424 PRK12422 chromosomal replicati 49.4 6.6 0.00014 46.1 0.6 19 323-342 141-159 (445)
425 PF06048 DUF927: Domain of unk 49.1 9.9 0.00021 41.9 1.9 29 312-341 182-210 (286)
426 KOG0249 LAR-interacting protei 49.1 6E+02 0.013 31.8 16.3 18 717-734 247-264 (916)
427 PF07851 TMPIT: TMPIT-like pro 48.7 74 0.0016 36.0 8.6 22 198-219 39-60 (330)
428 PRK01297 ATP-dependent RNA hel 48.5 9.4 0.0002 44.9 1.7 26 314-341 116-141 (475)
429 COG1484 DnaC DNA replication p 48.5 7.5 0.00016 42.2 0.8 34 307-342 90-123 (254)
430 TIGR02231 conserved hypothetic 48.3 1.1E+02 0.0024 36.7 10.7 19 224-242 153-171 (525)
431 TIGR00614 recQ_fam ATP-depende 48.1 11 0.00024 44.4 2.2 26 314-341 18-43 (470)
432 PF07798 DUF1640: Protein of u 48.0 3.2E+02 0.007 27.9 14.2 40 147-186 56-96 (177)
433 PF07321 YscO: Type III secret 47.9 3E+02 0.0065 27.8 11.9 30 141-170 66-95 (152)
434 TIGR03345 VI_ClpV1 type VI sec 47.9 1.2E+02 0.0026 38.8 11.4 17 325-341 597-613 (852)
435 PF12775 AAA_7: P-loop contain 47.7 10 0.00022 41.6 1.7 28 313-341 23-50 (272)
436 PF04012 PspA_IM30: PspA/IM30 47.5 3.6E+02 0.0077 28.3 20.7 22 636-657 96-117 (221)
437 PF04108 APG17: Autophagy prot 47.5 5.2E+02 0.011 30.2 24.4 40 697-737 351-390 (412)
438 PF13747 DUF4164: Domain of un 47.4 2.3E+02 0.0049 26.0 10.6 35 634-668 35-69 (89)
439 KOG4196 bZIP transcription fac 47.4 1.1E+02 0.0024 30.0 8.3 27 711-737 78-104 (135)
440 PRK03947 prefoldin subunit alp 47.3 2.8E+02 0.0061 27.0 12.9 23 691-713 96-118 (140)
441 TIGR01389 recQ ATP-dependent D 47.3 12 0.00025 45.6 2.2 27 313-341 19-45 (591)
442 KOG3091 Nuclear pore complex, 46.9 2.5E+02 0.0053 33.5 12.5 10 519-528 229-238 (508)
443 PF02456 Adeno_IVa2: Adenoviru 46.9 8.9 0.00019 42.8 1.1 15 328-342 91-105 (369)
444 PF15035 Rootletin: Ciliary ro 46.8 3.5E+02 0.0076 28.1 12.6 13 177-189 88-100 (182)
445 PF10234 Cluap1: Clusterin-ass 46.7 4.4E+02 0.0096 29.1 16.6 19 667-685 219-237 (267)
446 KOG0979 Structural maintenance 46.6 7.9E+02 0.017 32.0 19.9 27 328-354 46-76 (1072)
447 KOG4572 Predicted DNA-binding 46.6 7.2E+02 0.016 31.6 16.7 30 722-751 1024-1054(1424)
448 PRK11331 5-methylcytosine-spec 46.5 12 0.00025 44.1 2.0 28 312-341 184-211 (459)
449 PRK09841 cryptic autophosphory 46.5 4.4E+02 0.0096 33.1 15.9 14 606-619 270-283 (726)
450 KOG4466 Component of histone d 46.4 4.5E+02 0.0097 29.1 14.4 31 698-731 103-133 (291)
451 PF05729 NACHT: NACHT domain 46.3 9.4 0.0002 37.0 1.1 16 326-341 2-17 (166)
452 TIGR00634 recN DNA repair prot 45.9 6.3E+02 0.014 30.7 19.4 14 328-341 26-39 (563)
453 KOG0979 Structural maintenance 45.9 8.1E+02 0.017 31.9 20.5 11 421-431 76-86 (1072)
454 PRK05703 flhF flagellar biosyn 45.7 8.9 0.00019 44.8 0.9 17 326-342 223-239 (424)
455 PRK11519 tyrosine kinase; Prov 45.7 3.7E+02 0.0079 33.8 15.0 11 266-276 404-414 (719)
456 PF10046 BLOC1_2: Biogenesis o 45.5 2.5E+02 0.0055 26.0 10.6 24 660-683 74-97 (99)
457 PF12777 MT: Microtubule-bindi 45.5 1.4E+02 0.0031 33.8 10.5 36 202-237 277-312 (344)
458 TIGR01618 phage_P_loop phage n 45.4 9.3 0.0002 40.7 0.9 21 324-344 12-32 (220)
459 KOG1510 RNA polymerase II holo 45.4 62 0.0013 31.9 6.3 22 141-162 62-83 (139)
460 PF02534 T4SS-DNA_transf: Type 45.2 14 0.00031 43.2 2.6 17 325-341 45-61 (469)
461 TIGR01069 mutS2 MutS2 family p 45.1 4.1E+02 0.0088 33.8 15.2 17 325-341 323-339 (771)
462 PF13476 AAA_23: AAA domain; P 45.1 9.6 0.00021 38.2 1.0 18 324-341 19-36 (202)
463 KOG3850 Predicted membrane pro 45.1 5.5E+02 0.012 29.7 17.3 33 206-238 81-113 (455)
464 PRK11634 ATP-dependent RNA hel 44.9 12 0.00025 46.1 1.8 26 314-341 35-60 (629)
465 KOG4302 Microtubule-associated 44.9 5.6E+02 0.012 31.9 15.7 141 582-726 103-259 (660)
466 PRK00131 aroK shikimate kinase 44.9 10 0.00022 37.3 1.1 17 325-341 5-21 (175)
467 TIGR02788 VirB11 P-type DNA tr 44.8 11 0.00024 41.9 1.4 30 312-342 133-162 (308)
468 PF15294 Leu_zip: Leucine zipp 44.8 2.5E+02 0.0055 31.1 11.7 92 643-734 130-228 (278)
469 cd01120 RecA-like_NTPases RecA 44.8 8.9 0.00019 36.8 0.6 15 327-341 2-16 (165)
470 KOG1103 Predicted coiled-coil 44.7 4.1E+02 0.0088 30.3 13.1 127 142-271 167-304 (561)
471 PLN03229 acetyl-coenzyme A car 44.5 7.5E+02 0.016 31.2 18.0 22 323-344 281-302 (762)
472 TIGR02132 phaR_Bmeg polyhydrox 44.5 3.8E+02 0.0083 27.8 12.3 114 595-711 71-184 (189)
473 cd02021 GntK Gluconate kinase 44.1 9.6 0.00021 37.1 0.7 15 327-341 2-16 (150)
474 PRK04537 ATP-dependent RNA hel 44.1 12 0.00026 45.4 1.7 25 315-341 39-63 (572)
475 PF13555 AAA_29: P-loop contai 44.0 10 0.00023 32.3 0.8 16 326-341 25-40 (62)
476 PLN02939 transferase, transfer 43.9 8.7E+02 0.019 31.7 18.8 143 587-740 224-377 (977)
477 KOG0354 DEAD-box like helicase 43.9 15 0.00032 45.5 2.4 22 315-339 70-91 (746)
478 PF12252 SidE: Dot/Icm substra 43.7 8.9E+02 0.019 31.8 19.4 163 566-733 1144-1341(1439)
479 PF04102 SlyX: SlyX; InterPro 43.5 95 0.0021 26.9 6.7 52 628-679 1-52 (69)
480 KOG3859 Septins (P-loop GTPase 43.5 3.4E+02 0.0074 30.3 12.2 85 142-243 319-404 (406)
481 TIGR02237 recomb_radB DNA repa 43.3 13 0.00029 38.3 1.7 23 316-338 1-26 (209)
482 PF10205 KLRAQ: Predicted coil 43.3 2.2E+02 0.0048 26.9 9.4 75 136-212 1-75 (102)
483 PRK13342 recombination factor 43.2 14 0.0003 42.8 2.0 29 313-341 25-53 (413)
484 PF13173 AAA_14: AAA domain 43.1 11 0.00023 36.0 0.9 16 326-341 4-19 (128)
485 COG1125 OpuBA ABC-type proline 42.9 10 0.00022 41.4 0.8 15 327-341 30-44 (309)
486 PRK06995 flhF flagellar biosyn 42.9 10 0.00022 45.0 0.9 16 326-341 258-273 (484)
487 PF14073 Cep57_CLD: Centrosome 42.8 4.1E+02 0.0088 27.6 17.1 140 585-730 32-171 (178)
488 TIGR00376 DNA helicase, putati 42.8 13 0.00029 45.6 1.8 25 316-341 166-190 (637)
489 TIGR01359 UMP_CMP_kin_fam UMP- 42.8 11 0.00024 37.9 0.9 13 327-339 2-14 (183)
490 PF06637 PV-1: PV-1 protein (P 42.8 5.9E+02 0.013 29.5 15.8 158 627-785 281-441 (442)
491 PF04582 Reo_sigmaC: Reovirus 42.5 44 0.00096 37.6 5.6 130 579-710 25-154 (326)
492 cd01123 Rad51_DMC1_radA Rad51_ 42.5 16 0.00034 38.4 2.1 26 314-339 6-34 (235)
493 PF13514 AAA_27: AAA domain 42.4 9.5E+02 0.021 31.8 21.1 153 582-735 801-978 (1111)
494 PF04728 LPP: Lipoprotein leuc 42.2 1.2E+02 0.0026 25.5 6.7 48 144-191 5-52 (56)
495 PF08647 BRE1: BRE1 E3 ubiquit 42.1 2.8E+02 0.0061 25.6 10.5 96 587-682 1-96 (96)
496 TIGR03158 cas3_cyano CRISPR-as 42.1 15 0.00033 41.7 2.0 28 313-340 3-30 (357)
497 PRK04406 hypothetical protein; 42.1 91 0.002 27.7 6.4 59 139-197 1-59 (75)
498 PRK04195 replication factor C 42.0 14 0.00029 43.9 1.7 30 312-341 26-56 (482)
499 PRK12705 hypothetical protein; 42.0 7E+02 0.015 30.1 16.7 117 606-722 59-176 (508)
500 cd01384 MYSc_type_XI Myosin mo 42.0 12 0.00025 46.4 1.2 34 308-341 71-105 (674)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-86 Score=779.81 Aligned_cols=331 Identities=41% Similarity=0.632 Sum_probs=290.4
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCC----------------------CCccceeEEEEecc-chhhHHHhhCCc
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK----------------------DGELGILTVDVFAD-ASPLVTSVLDGY 323 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~----------------------~~~~~~~~~dVf~~-v~plV~~~l~G~ 323 (860)
-||+|+|||||++.+|....++.+|+.++.. .|++...+.|||.. |.|+|..|+.||
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~Gy 128 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGY 128 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccC
Confidence 6999999999999999988888888766521 11111112345555 799999999999
Q ss_pred cEEEEeeccCCCCccccccC--------CCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCC
Q 037169 324 NVCIFAYGQTGTGKTFTMEG--------TQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTS 395 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~G--------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~ 395 (860)
|||||||||||+||||||+| .++++|||||++.+||+.+.... .+|+|+|||+|+|||.|+|||++....
T Consensus 129 NCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 129 NCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred CceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 99999999999999999999 56789999999999999998765 589999999999999999999976554
Q ss_pred -CceEEEecC-----CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC---c
Q 037169 396 -KKLEIRQAS-----EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING---E 466 (860)
Q Consensus 396 -~~l~i~~~~-----~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~---~ 466 (860)
+.+.+..++ +|++.|.|+.++.|+++.|++.+|.+|...|++++|.||.+|||||+||+|+|+......+ -
T Consensus 207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel 286 (1041)
T KOG0243|consen 207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL 286 (1041)
T ss_pred ccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh
Confidence 667777665 6899999999999999999999999999999999999999999999999999977643322 2
Q ss_pred eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169 467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546 (860)
Q Consensus 467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~ 546 (860)
...|||+||||||||.++++|+.+.|.+||+.||+||.+||+||+||..+++|||||+|||||||||||||.+||+||+|
T Consensus 287 vK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIAT 366 (1041)
T KOG0243|consen 287 VKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIAT 366 (1041)
T ss_pred HhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHhHHHHHHHHHHhhcccccccccccC---------hHHHHHHHHHHHHHHHHhc
Q 037169 547 ISPSEQDLGETLSSLNFASRVRGVELSPARKQID---------ISKLQKVKMMLEKTKQEVG 599 (860)
Q Consensus 547 VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~---------~~~~~~lk~~l~~~k~e~~ 599 (860)
|||+..+++||++||.||.||++|+|+|..++.- ..+|.+|+..+...+.+..
T Consensus 367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnG 428 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNG 428 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCc
Confidence 9999999999999999999999999999988643 2466777766666555443
No 2
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.5e-85 Score=766.99 Aligned_cols=456 Identities=43% Similarity=0.558 Sum_probs=369.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhh-------hhHHHHHHHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLD---NKCFQN-------LCLDQALEKQAAKLKDV 210 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~~-------~~~~~~~~~~~~~~~~~ 210 (860)
.|...+++..+..+..++......+.++...|.....+-..+...+. .....+ ...++.+.....++..+
T Consensus 174 ~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l 253 (670)
T KOG0239|consen 174 LKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEEL 253 (670)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56667788888888888877777777777666553333222222211 111111 11122233333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---hhhHHhhhhhccC-CCeEEEEEeCCCCchhhhCC
Q 037169 211 ASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSV---PQLNKMVSTIQVL-GNIRVFCRCRPLSKEEASAG 286 (860)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~---~~~~~~~~~~~~~-gnIrV~~RvRP~~~~E~~~~ 286 (860)
+..+..++......-...+..++.+...+..|........... ...++++|+|+++ |||||||||||+.+.+....
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~ 333 (670)
T KOG0239|consen 254 KAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRL 333 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccc
Confidence 5555555555555444555555444444443433322222222 5668999999887 99999999999999887642
Q ss_pred CceEEE----------------------ecCCCCCccceeEEEEeccchhhHHHhhCCccEEEEeeccCCCCccccccC-
Q 037169 287 HAMVVD----------------------FSAAKDGELGILTVDVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG- 343 (860)
Q Consensus 287 ~~~~v~----------------------~~~~~~~~~~~~~~dVf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G- 343 (860)
...++. |.+++.+.+...+.|||.++.|+|+++|||||+||||||||||||||||.|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~ 413 (670)
T KOG0239|consen 334 QSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP 413 (670)
T ss_pred cccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC
Confidence 222221 333334444555678999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceEecCeeEEEeCChHH
Q 037169 344 TQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKE 423 (860)
Q Consensus 344 ~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e 423 (860)
+++++|||||++.+||..+.....+|.|.+.+||+|||||.|+|||.+.+...++.|+++++|..+|+|++.+.|.+.++
T Consensus 414 ~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~ 493 (670)
T KOG0239|consen 414 TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEE 493 (670)
T ss_pred CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHH
Confidence 69999999999999999999988899999999999999999999998765567899999999999999999999999999
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccccccchhchHHHhHhhhhH
Q 037169 424 VWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSL 503 (860)
Q Consensus 424 ~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL 503 (860)
++.++..|..+|++++|.+|++|||||+||+|+|.+.+..++..+.|.|+|||||||||+++++++|+|++|+++||+||
T Consensus 494 v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSL 573 (670)
T KOG0239|consen 494 VDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSL 573 (670)
T ss_pred HHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhcccccccccccChHH
Q 037169 504 SALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISK 583 (860)
Q Consensus 504 ~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~~ 583 (860)
++||+||.||+.+..||||||||||+||++||||++||+|||+|||...++.||+++|+||+|++.+++++++.+....+
T Consensus 574 S~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~ 653 (670)
T KOG0239|consen 574 SALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSD 653 (670)
T ss_pred hhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHH
Q 037169 584 LQKVKMMLEKTKQ 596 (860)
Q Consensus 584 ~~~lk~~l~~~k~ 596 (860)
...+......++.
T Consensus 654 ~~~~~~~~~~~~~ 666 (670)
T KOG0239|consen 654 DVSLKRFGQLEKL 666 (670)
T ss_pred hhhhhhhhhhhhh
Confidence 7777666655543
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-82 Score=721.29 Aligned_cols=333 Identities=45% Similarity=0.641 Sum_probs=293.5
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------------CCCccceeEEEEecc-chhhHHHhhCC
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------------KDGELGILTVDVFAD-ASPLVTSVLDG 322 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------------~~~~~~~~~~dVf~~-v~plV~~~l~G 322 (860)
-+|+||+||||++..+...+...++.++.. ..++....+.|||.. +.|+|++|++|
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G 84 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG 84 (574)
T ss_pred cceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence 478999999999998776654444433221 111112223456655 68999999999
Q ss_pred ccEEEEeeccCCCCccccccCC-CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEE
Q 037169 323 YNVCIFAYGQTGTGKTFTMEGT-QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIR 401 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~G~-~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~ 401 (860)
||+||||||||||||||||.|+ ++..|||||+|.+||..+....+...|.|+|||+|||||.|+|||++.+. +.+.|+
T Consensus 85 yNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~l~lr 163 (574)
T KOG4280|consen 85 YNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KGLELR 163 (574)
T ss_pred cCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CCceee
Confidence 9999999999999999999999 67789999999999999999877778999999999999999999986543 689999
Q ss_pred ecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeec-cCC--ceeEeeEEEeecC
Q 037169 402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNL-ING--ECTKSKLWLVDLA 478 (860)
Q Consensus 402 ~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~-~~~--~~~~skL~lVDLA 478 (860)
++++.|+||.|++++.|.|+++++.+|..|..+|++++|.||.+|||||+||+|+|+.... ..+ ....|+|+|||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa 243 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA 243 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence 9999999999999999999999999999999999999999999999999999999998332 222 3467999999999
Q ss_pred CcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCC-cccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhH
Q 037169 479 GSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGET 557 (860)
Q Consensus 479 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~-hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ET 557 (860)
||||..++++.|+|++||.+||+||++||+||.||++++. ||||||||||+||||||||||||+||+||||+..+++||
T Consensus 244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET 323 (574)
T KOG4280|consen 244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET 323 (574)
T ss_pred chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence 9999999999999999999999999999999999999766 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccccCh-HHHHHHHHHHHHHHHHhcC
Q 037169 558 LSSLNFASRVRGVELSPARKQIDI-SKLQKVKMMLEKTKQEVGS 600 (860)
Q Consensus 558 l~TL~fA~r~r~I~~~p~~~~~~~-~~~~~lk~~l~~~k~e~~~ 600 (860)
++||+||+|++.|+|.|.++.... ..+..++.+++.++.++..
T Consensus 324 lsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 324 LSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDP 367 (574)
T ss_pred HHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999988765 5677777788777777654
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-81 Score=724.07 Aligned_cols=334 Identities=35% Similarity=0.558 Sum_probs=296.6
Q ss_pred CCCeEEEEEeCCCCchhhhCCCceEEEecCCC-------------CCcccee-------------EEEEecc-chhhHHH
Q 037169 266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAAK-------------DGELGIL-------------TVDVFAD-ASPLVTS 318 (860)
Q Consensus 266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-------------~~~~~~~-------------~~dVf~~-v~plV~~ 318 (860)
..+|.|+||||||+..|....+..|+...+.. .|.+... +..||.+ +.|+++.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 36899999999999999988777777544321 1111111 1237777 6899999
Q ss_pred hhCCccEEEEeeccCCCCccccccCCC--CCCCchhhHHHHHHHHHHH-hcCCceEEEEEEEEEEeccccccccCCCCCC
Q 037169 319 VLDGYNVCIFAYGQTGTGKTFTMEGTQ--QNRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTSPTS 395 (860)
Q Consensus 319 ~l~G~N~~IfaYGqTGSGKTyTM~G~~--~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~ 395 (860)
+++|||+||||||||||||||||+|.+ +++|||||++++||..+.. ......|+|.|||+|||||.|+|||+.++..
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999987 8999999999999999986 3456899999999999999999999965667
Q ss_pred CceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC----ceeEee
Q 037169 396 KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING----ECTKSK 471 (860)
Q Consensus 396 ~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~----~~~~sk 471 (860)
..|++|++|--|+||.+|+.+.|+|..|+..+|..|++.|++++|+||+.|||||+||+|.+.+...... ...+|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 8999999999999999999999999999999999999999999999999999999999999988754322 457899
Q ss_pred EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc-------CCCcccCCCCcchhhcccccCCCcceeEE
Q 037169 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-------KSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544 (860)
Q Consensus 472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~-------~~~hVPYRdSKLT~LLqdsLgGnskT~mI 544 (860)
++|||||||||.+.+|+.|+|+||+.+|||||.+||.||+||+. ++.+||||||-|||||++.|||||||.||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999999999999999999999999999999999985 23499999999999999999999999999
Q ss_pred EecCCCCCCHHhHHHHHHHHHHhhcccccccccccChHH-HHHHHHHHHHHHHHhc
Q 037169 545 LQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDISK-LQKVKMMLEKTKQEVG 599 (860)
Q Consensus 545 ~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~~-~~~lk~~l~~~k~e~~ 599 (860)
+++||++.||+|||+|||||.|||.|++.+.++...... |++|++++.+|+.-+.
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~ 378 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLR 378 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988876554 6778888888876654
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.2e-79 Score=676.85 Aligned_cols=312 Identities=42% Similarity=0.629 Sum_probs=286.0
Q ss_pred cCCCeEEEEEeCCCCchhhhCCCceEEEecC------------------CCCCccceeEEEEecc-chhhHHHhhCCccE
Q 037169 265 VLGNIRVFCRCRPLSKEEASAGHAMVVDFSA------------------AKDGELGILTVDVFAD-ASPLVTSVLDGYNV 325 (860)
Q Consensus 265 ~~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~------------------~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~ 325 (860)
+.++|+|+||+||++..|...|...+..|.+ ++.|.....+.+||.. +.|+|++||.|||+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 5699999999999999887766555444433 2223333334456655 78999999999999
Q ss_pred EEEeeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEe
Q 037169 326 CIFAYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQ 402 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~ 402 (860)
||||||||||||||||.|... ..||+||++++||+.+.....+..|+|+|||||||+|+|+|||+ +....+.+.+
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~--~~k~nlsvhe 162 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLD--PEKTNLSVHE 162 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhC--cccCCceeec
Confidence 999999999999999999765 56999999999999999999999999999999999999999998 4566899999
Q ss_pred cCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccc
Q 037169 403 ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER 482 (860)
Q Consensus 403 ~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr 482 (860)
|...+++|+|+++..|.++++++++++.|..+|+++.|+||.+|||||+||+|+|.+.+..+.....|+|.||||||||+
T Consensus 163 DK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEk 242 (607)
T KOG0240|consen 163 DKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEK 242 (607)
T ss_pred ccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhchHHHhHhhhhHHHHHHHHHHhccC-CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHH
Q 037169 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATK-SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 483 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL 561 (860)
++++|+.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||||||+|||||+|.+|+|+||+..+..||.+||
T Consensus 243 vsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl 322 (607)
T KOG0240|consen 243 VSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTL 322 (607)
T ss_pred cCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccch
Confidence 9999999999999999999999999999999987 889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccc
Q 037169 562 NFASRVRGVELSPARKQ 578 (860)
Q Consensus 562 ~fA~r~r~I~~~p~~~~ 578 (860)
+|+.|++.|+|.+..+.
T Consensus 323 ~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 323 RFGNRAKTIKNTVWVNL 339 (607)
T ss_pred hhccccccccchhhhhh
Confidence 99999999999887653
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.3e-76 Score=703.09 Aligned_cols=329 Identities=39% Similarity=0.600 Sum_probs=283.5
Q ss_pred CCCeEEEEEeCCCCchhhhCCCceEE------------EecCCCCCccceeEEEEecc-chhhHHHhhCCccEEEEeecc
Q 037169 266 LGNIRVFCRCRPLSKEEASAGHAMVV------------DFSAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYGQ 332 (860)
Q Consensus 266 ~gnIrV~~RvRP~~~~E~~~~~~~~v------------~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYGq 332 (860)
-++|+|||||||++..|. +...++ .|.++..++....+.+||.. +.|+|+++++|||+|||||||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQ 174 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQ 174 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCC
Confidence 379999999999998763 222222 13344444444555778888 589999999999999999999
Q ss_pred CCCCccccccCCC----------CCCCchhhHHHHHHHHHHHh-----cCCceEEEEEEEEEEeccccccccCCCCCCCc
Q 037169 333 TGTGKTFTMEGTQ----------QNRGVNYRTLELLFKIAEER-----KETFTYSISVSALEVYNEQIRDLLDTSPTSKK 397 (860)
Q Consensus 333 TGSGKTyTM~G~~----------~~~GIipRal~~LF~~~~~~-----~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~ 397 (860)
|||||||||+|+. .++|||||++++||..+... ...+.|.|+|||+|||||.|+|||++ ..+.
T Consensus 175 TGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp--~~k~ 252 (1320)
T PLN03188 175 TGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP--SQKN 252 (1320)
T ss_pred CCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc--ccCC
Confidence 9999999999964 46899999999999998653 23568999999999999999999984 3457
Q ss_pred eEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--C--CceeEeeEE
Q 037169 398 LEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--N--GECTKSKLW 473 (860)
Q Consensus 398 l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~--~~~~~skL~ 473 (860)
+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|...... + .....|+|+
T Consensus 253 L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLn 332 (1320)
T PLN03188 253 LQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRIN 332 (1320)
T ss_pred ceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999865432 2 234579999
Q ss_pred EeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc-----CCCcccCCCCcchhhcccccCCCcceeEEEecC
Q 037169 474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT-----KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQIS 548 (860)
Q Consensus 474 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~-----~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VS 548 (860)
|||||||||..++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||+|+||||||
T Consensus 333 LVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VS 412 (1320)
T PLN03188 333 LVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAIS 412 (1320)
T ss_pred EEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecC
Confidence 999999999999999999999999999999999999999985 457999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHhhcccccccccccChHHHHHHHHHHHHHHHHh
Q 037169 549 PSEQDLGETLSSLNFASRVRGVELSPARKQIDISKLQKVKMMLEKTKQEV 598 (860)
Q Consensus 549 P~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~~~~~~lk~~l~~~k~e~ 598 (860)
|+..+++||++||+||+|++.|++.|..+.....++..++.++..++.++
T Consensus 413 Ps~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL 462 (1320)
T PLN03188 413 PSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDEL 462 (1320)
T ss_pred CchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765554444555555444443
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.1e-75 Score=649.38 Aligned_cols=301 Identities=43% Similarity=0.643 Sum_probs=272.8
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecC--------CC----------------------CCccceeEEEEecc-chhhH
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSA--------AK----------------------DGELGILTVDVFAD-ASPLV 316 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~--------~~----------------------~~~~~~~~~dVf~~-v~plV 316 (860)
||||||||||+.+.|...+...++.... .. .++....+.+||.+ +.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 7999999999999987666555554322 11 11111122346665 46999
Q ss_pred HHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCC
Q 037169 317 TSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSK 396 (860)
Q Consensus 317 ~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~ 396 (860)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+......+.|.|++||+|||||.|+|||++. .+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~~ 158 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS--SG 158 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC--CC
Confidence 9999999999999999999999999999999999999999999999988878999999999999999999999853 56
Q ss_pred ceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc---CCceeEeeEE
Q 037169 397 KLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI---NGECTKSKLW 473 (860)
Q Consensus 397 ~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~---~~~~~~skL~ 473 (860)
.+.+++++.++++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|+
T Consensus 159 ~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 159 PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999988765 4567889999
Q ss_pred EeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC---CcccCCCCcchhhcccccCCCcceeEEEecCCC
Q 037169 474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPS 550 (860)
Q Consensus 474 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~ 550 (860)
|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+. .||||||||||+||+|+||||++|+||+||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHhhcc
Q 037169 551 EQDLGETLSSLNFASRVRGV 570 (860)
Q Consensus 551 ~~~~~ETl~TL~fA~r~r~I 570 (860)
..+++||++||+||+||++|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999986
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=7.5e-75 Score=642.59 Aligned_cols=302 Identities=42% Similarity=0.626 Sum_probs=266.4
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEec----------------CCCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFS----------------AAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA 329 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~----------------~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa 329 (860)
.||||||||||+...|...+...++... ++..+.....+.+||.+ +.|+|+++++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 4899999999999988755444444322 22222222334567777 589999999999999999
Q ss_pred eccCCCCccccccCCCC--------CCCchhhHHHHHHHHHHHh----cCCceEEEEEEEEEEeccccccccCCCCCCCc
Q 037169 330 YGQTGTGKTFTMEGTQQ--------NRGVNYRTLELLFKIAEER----KETFTYSISVSALEVYNEQIRDLLDTSPTSKK 397 (860)
Q Consensus 330 YGqTGSGKTyTM~G~~~--------~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~ 397 (860)
||||||||||||+|+.. ++||+||++++||..+... .....|.|++||+|||||.|+|||++ ....
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~--~~~~ 158 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP--TSRN 158 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC--CCCC
Confidence 99999999999999763 6899999999999988653 24568999999999999999999974 3457
Q ss_pred eEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCC--ceeEeeEEEe
Q 037169 398 LEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLING--ECTKSKLWLV 475 (860)
Q Consensus 398 l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~--~~~~skL~lV 475 (860)
+.+++++.++++|+|++++.|.|++|++.+|..|..+|++++|.+|.+|||||+||+|.|...+...+ ....|+|+||
T Consensus 159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 238 (337)
T cd01373 159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV 238 (337)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987664433 3567999999
Q ss_pred ecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc----CCCcccCCCCcchhhcccccCCCcceeEEEecCCCC
Q 037169 476 DLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT----KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSE 551 (860)
Q Consensus 476 DLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~----~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~ 551 (860)
|||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+||+||||+.
T Consensus 239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~ 318 (337)
T cd01373 239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS 318 (337)
T ss_pred ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCc
Confidence 9999999999999999999999999999999999999974 468999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHhhcc
Q 037169 552 QDLGETLSSLNFASRVRGV 570 (860)
Q Consensus 552 ~~~~ETl~TL~fA~r~r~I 570 (860)
.+++||++||+||+|++.|
T Consensus 319 ~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 319 KCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999976
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-74 Score=679.12 Aligned_cols=310 Identities=42% Similarity=0.642 Sum_probs=278.2
Q ss_pred CCeEEEEEeCCCCchhhhCCC----------ceE-------------EEecCCCCCccceeEEEEecc-chhhHHHhhCC
Q 037169 267 GNIRVFCRCRPLSKEEASAGH----------AMV-------------VDFSAAKDGELGILTVDVFAD-ASPLVTSVLDG 322 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~----------~~~-------------v~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G 322 (860)
.+|.|+|||||+.+.+...+. ..+ ..|.+++.|.....+.+||.. ++|+|.+++.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 589999999999987322111 100 122333444445556778887 89999999999
Q ss_pred ccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEe
Q 037169 323 YNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQ 402 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~ 402 (860)
||++|||||||||||||||.|.+.+|||||+++.+||+.+.... .+.|.|.|||+|||||.|+|||+++ ...+.|++
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~--~~~L~irE 162 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPD--GGDLRLRE 162 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCC--CCCceEeE
Confidence 99999999999999999999999999999999999999999876 7899999999999999999999854 44599999
Q ss_pred cCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCccc
Q 037169 403 ASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSER 482 (860)
Q Consensus 403 ~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr 482 (860)
|+.++++|+||++..|.|+++++.+|..|..+|+++.|.+|..|||||+||+|.|.......+. ..|+|+|||||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER 241 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999987754442 678999999999999
Q ss_pred ccccccchhchHHHhHhhhhHHHHHHHHHHhccC--CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHH
Q 037169 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLATK--SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSS 560 (860)
Q Consensus 483 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~--~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~T 560 (860)
..++++.|.|++|+.+||+||.+||+||.+|+.+ ..||||||||||||||++||||++|+|||||+|+..+++||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 9999999999999999999999999999999976 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccccC
Q 037169 561 LNFASRVRGVELSPARKQID 580 (860)
Q Consensus 561 L~fA~r~r~I~~~p~~~~~~ 580 (860)
|+||+|++.|.+.+..+.+.
T Consensus 322 L~fAsrak~i~~~~~~n~~~ 341 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVIL 341 (675)
T ss_pred HHHHHHhhhcccccccceec
Confidence 99999999999998877553
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4e-73 Score=630.55 Aligned_cols=295 Identities=38% Similarity=0.596 Sum_probs=260.9
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecC------------------------------CCCCccceeEEEEecc-chhhH
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSA------------------------------AKDGELGILTVDVFAD-ASPLV 316 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~------------------------------~~~~~~~~~~~dVf~~-v~plV 316 (860)
+|+|||||||+.+.|...+...++.... +..+.....+.+||.. +.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 7999999999999886554443332211 0111111122345655 57999
Q ss_pred HHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCC--
Q 037169 317 TSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPT-- 394 (860)
Q Consensus 317 ~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-- 394 (860)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|++||+|||||.|+|||++.+.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 999999999999999999999999999999999999999999999875 899999999999999999986543
Q ss_pred --CCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC--------
Q 037169 395 --SKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN-------- 464 (860)
Q Consensus 395 --~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~-------- 464 (860)
.+.+.++++++++++|+|++++.|.|++|++.+|..|..+|.+++|.+|.+|||||+||+|++.......
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 3579999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------CCCcccCCCCcchhhcccccCCC
Q 037169 465 GECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------KSGHIPYRNSKLTHLLQDSLGGD 538 (860)
Q Consensus 465 ~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------~~~hVPYRdSKLT~LLqdsLgGn 538 (860)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 446789999999999999999999999999999999999999999999986 56899999999999999999999
Q ss_pred cceeEEEecCCCCCCHHhHHHHHHHHHHhh
Q 037169 539 SKTLMFLQISPSEQDLGETLSSLNFASRVR 568 (860)
Q Consensus 539 skT~mI~~VSP~~~~~~ETl~TL~fA~r~r 568 (860)
++|+||+||||+..+++||++||+||.+++
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.9e-72 Score=627.90 Aligned_cols=310 Identities=40% Similarity=0.628 Sum_probs=277.1
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCC-----------------------CCCccc-------eeEEEEecc-chhh
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA-----------------------KDGELG-------ILTVDVFAD-ASPL 315 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~-----------------------~~~~~~-------~~~~dVf~~-v~pl 315 (860)
+||+|||||||++..|...++..++.++.. ..+... ..+.+||.+ +.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999887766655543321 111111 223456655 5799
Q ss_pred HHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcC-CceEEEEEEEEEEeccccccccCCCC-
Q 037169 316 VTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE-TFTYSISVSALEVYNEQIRDLLDTSP- 393 (860)
Q Consensus 316 V~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~i~DLL~~~~- 393 (860)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|++||+|||||.|+|||++.+
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 9999999999999999999999999999999999999999999999987654 67899999999999999999998764
Q ss_pred CCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc----CCceeE
Q 037169 394 TSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI----NGECTK 469 (860)
Q Consensus 394 ~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~----~~~~~~ 469 (860)
....+.+++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999887654 345678
Q ss_pred eeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccC--------CCcccCCCCcchhhcccccCCCcce
Q 037169 470 SKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATK--------SGHIPYRNSKLTHLLQDSLGGDSKT 541 (860)
Q Consensus 470 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~--------~~hVPYRdSKLT~LLqdsLgGnskT 541 (860)
|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.. ..|||||+||||+||+++|||+++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999863 4899999999999999999999999
Q ss_pred eEEEecCCCCCCHHhHHHHHHHHHHhhcccccccc
Q 037169 542 LMFLQISPSEQDLGETLSSLNFASRVRGVELSPAR 576 (860)
Q Consensus 542 ~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~ 576 (860)
+||+||||...+++||++||+||++++.|++.|..
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 99999999999999999999999999999999864
No 12
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-72 Score=639.02 Aligned_cols=373 Identities=34% Similarity=0.546 Sum_probs=308.9
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCC--------------CCccceeE------------------EEEecc-ch
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK--------------DGELGILT------------------VDVFAD-AS 313 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~--------------~~~~~~~~------------------~dVf~~-v~ 313 (860)
.+|||+|||||++.+|.+-....+++.+... ......|. .+||.. ..
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 6899999999999999887666666544211 01111121 456766 45
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCCC
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDTS 392 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~~ 392 (860)
-+|+++|+|||+||||||||||||||||+|..+++|||||++..||..+... .....|.|.|||+|||||++||||+|.
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 6889999999999999999999999999999999999999999999998764 456789999999999999999999998
Q ss_pred CCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--CCc--ee
Q 037169 393 PTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--NGE--CT 468 (860)
Q Consensus 393 ~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~~~--~~ 468 (860)
+.++.+.++++.--|+||.||++..|.|++|+-.++..|+++|++++|+||..|||||+||.|.|.+.-.+ ++. ..
T Consensus 164 ~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeK 243 (1714)
T KOG0241|consen 164 GSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEK 243 (1714)
T ss_pred CCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999875332 222 35
Q ss_pred EeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhcc------CCCcccCCCCcchhhcccccCCCccee
Q 037169 469 KSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLAT------KSGHIPYRNSKLTHLLQDSLGGDSKTL 542 (860)
Q Consensus 469 ~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------~~~hVPYRdSKLT~LLqdsLgGnskT~ 542 (860)
.|+|+|||||||||..++++.|.|++|+.+||+||++||.||+||++ ++++||||||-||+||+|+|||||+|+
T Consensus 244 vsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTv 323 (1714)
T KOG0241|consen 244 VSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTV 323 (1714)
T ss_pred eeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeE
Confidence 79999999999999999999999999999999999999999999985 346999999999999999999999999
Q ss_pred EEEecCCCCCCHHhHHHHHHHHHHhhcccccccccccCh-HHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHhh
Q 037169 543 MFLQISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI-SKLQKVKMMLEKTKQEVGSKD-DVIQKLEENFQNLEVKAK 620 (860)
Q Consensus 543 mI~~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~-~~~~~lk~~l~~~k~e~~~~~-~~i~~le~~~~~l~~~~~ 620 (860)
||+||||++++|+||++|||||.|||.|+|....+.... .-+.+++.++++++..+...+ .....+++.+++++..++
T Consensus 324 MiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ 403 (1714)
T KOG0241|consen 324 MIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIK 403 (1714)
T ss_pred EEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776654 346778888888777665422 223344444444433221
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 037169 621 GNVQLCKNQQEKINELESQLES 642 (860)
Q Consensus 621 ~~~~~~~~~~~k~~ele~~l~~ 642 (860)
+.....++++..++.+...
T Consensus 404 ---ei~~twEEkl~ktE~in~e 422 (1714)
T KOG0241|consen 404 ---EITVTWEEKLRKTEEINQE 422 (1714)
T ss_pred ---HHHhHHHHHHHHHHHHHHH
Confidence 2223344555555544443
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.7e-71 Score=612.27 Aligned_cols=294 Identities=37% Similarity=0.563 Sum_probs=262.7
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCC--------------------------CCCccceeEEEEecc-chhhHHHh
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA--------------------------KDGELGILTVDVFAD-ASPLVTSV 319 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~--------------------------~~~~~~~~~~dVf~~-v~plV~~~ 319 (860)
.||+|||||||+.+.|...+...++..+.. ..+.....+.+||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999999875554443332221 111111122346655 68999999
Q ss_pred hCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceE
Q 037169 320 LDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLE 399 (860)
Q Consensus 320 l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~ 399 (860)
++|||+||||||||||||||||+|+..++||+||++++||+.+.... ..|.|++||+|||||.++|||++ .+.+.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~~~l~ 155 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---RKRLS 155 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---cccee
Confidence 99999999999999999999999999999999999999999998655 68999999999999999999985 46799
Q ss_pred EEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCC
Q 037169 400 IRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAG 479 (860)
Q Consensus 400 i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAG 479 (860)
+++++.++++|+|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|...+. ....|+|+||||||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAG 232 (322)
T cd01367 156 VLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAG 232 (322)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCC
Confidence 999999999999999999999999999999999999999999999999999999999988764 45789999999999
Q ss_pred cccccccc-cchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHH
Q 037169 480 SERLAKTE-VQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETL 558 (860)
Q Consensus 480 SEr~~~t~-~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl 558 (860)
|||...++ ..|.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+||||++|+||+||||+..+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99998765 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 037169 559 SSLNFASRVR 568 (860)
Q Consensus 559 ~TL~fA~r~r 568 (860)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1e-70 Score=613.35 Aligned_cols=310 Identities=43% Similarity=0.631 Sum_probs=274.8
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCC----------------------CCCccceeEEEEecc-chhhHHHhhCCc
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAA----------------------KDGELGILTVDVFAD-ASPLVTSVLDGY 323 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~----------------------~~~~~~~~~~dVf~~-v~plV~~~l~G~ 323 (860)
+||+|+|||||+...|...+...++..... ..+.....+.+||.. +.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999998876555554444322 111122223456665 689999999999
Q ss_pred cEEEEeeccCCCCccccccCCC-----------CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCC
Q 037169 324 NVCIFAYGQTGTGKTFTMEGTQ-----------QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTS 392 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~G~~-----------~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 392 (860)
|+||||||||||||||||+|+. .++|||||++.+||+.+... ...|.|++||+|||||.|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 9999999999999999999984 34899999999999999875 5689999999999999999999865
Q ss_pred C-CCCceEEEec--CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---Cc
Q 037169 393 P-TSKKLEIRQA--SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN---GE 466 (860)
Q Consensus 393 ~-~~~~l~i~~~--~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~---~~ 466 (860)
. ..+.+.++++ ..++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|....... ..
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~ 239 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEEL 239 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCcc
Confidence 3 3567999999 5889999999999999999999999999999999999999999999999999998765432 23
Q ss_pred eeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEe
Q 037169 467 CTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQ 546 (860)
Q Consensus 467 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~ 546 (860)
...|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+||+|
T Consensus 240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHhHHHHHHHHHHhhcccccccccc
Q 037169 547 ISPSEQDLGETLSSLNFASRVRGVELSPARKQ 578 (860)
Q Consensus 547 VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~ 578 (860)
|||+..+++||++||+||+++++|++.|..++
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999998764
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.4e-70 Score=604.71 Aligned_cols=301 Identities=46% Similarity=0.700 Sum_probs=269.8
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecCCC-----------------------CCccceeEEEEecc-chhhHHHhhCCc
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----------------------DGELGILTVDVFAD-ASPLVTSVLDGY 323 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-----------------------~~~~~~~~~dVf~~-v~plV~~~l~G~ 323 (860)
||+|+|||||+++.|...++..++..++.. .++....+.+||+. +.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGY 81 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999988877666555543221 11112222456666 689999999999
Q ss_pred cEEEEeeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEE
Q 037169 324 NVCIFAYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEI 400 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i 400 (860)
|+||||||||||||||||+|+.. ++|||||++++||+.+..... ..|.|++||+|||||.|+|||++.. .+.+.+
T Consensus 82 n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l~i 159 (333)
T cd01371 82 NGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKLEL 159 (333)
T ss_pred ceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCceeE
Confidence 99999999999999999999887 899999999999999987654 6899999999999999999998542 357999
Q ss_pred EecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc---CCceeEeeEEEeec
Q 037169 401 RQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI---NGECTKSKLWLVDL 477 (860)
Q Consensus 401 ~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~---~~~~~~skL~lVDL 477 (860)
++++.++++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|...+.. .+....|+|+||||
T Consensus 160 ~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDL 239 (333)
T cd01371 160 KERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDL 239 (333)
T ss_pred EEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999987653 34466899999999
Q ss_pred CCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCC-cccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHh
Q 037169 478 AGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSG-HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGE 556 (860)
Q Consensus 478 AGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~-hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~E 556 (860)
|||||..+++..|.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+++||||++|+||+||||...+++|
T Consensus 240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e 319 (333)
T cd01371 240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE 319 (333)
T ss_pred CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999998775 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 037169 557 TLSSLNFASRVRGV 570 (860)
Q Consensus 557 Tl~TL~fA~r~r~I 570 (860)
|++||+||+|+|.|
T Consensus 320 Tl~TL~fa~r~r~I 333 (333)
T cd01371 320 TLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999976
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.6e-70 Score=602.72 Aligned_cols=302 Identities=45% Similarity=0.692 Sum_probs=275.0
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCC-----------------CCccceeEEEEecc-chhhHHHhhCCccEEEE
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK-----------------DGELGILTVDVFAD-ASPLVTSVLDGYNVCIF 328 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~-----------------~~~~~~~~~dVf~~-v~plV~~~l~G~N~~If 328 (860)
.+|+|+|||||+.+.|...+...++.+.... .+.....+.+||.. +.|+|+++++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 4899999999999988666655555544331 11111222456655 58999999999999999
Q ss_pred eeccCCCCccccccCCCC---CCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCC
Q 037169 329 AYGQTGTGKTFTMEGTQQ---NRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASE 405 (860)
Q Consensus 329 aYGqTGSGKTyTM~G~~~---~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~ 405 (860)
|||||||||||||+|++. ++||+||++++||+.+........|.|++||+|||||.++|||++. ...+.+++++.
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~~~~~ 159 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQVHEDKN 159 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCceEEEcCC
Confidence 999999999999999988 8999999999999999888777899999999999999999999853 45689999999
Q ss_pred CceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccc
Q 037169 406 GFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAK 485 (860)
Q Consensus 406 g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~ 485 (860)
++++|+|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||||||+..+
T Consensus 160 ~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~ 239 (325)
T cd01369 160 RGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSK 239 (325)
T ss_pred CCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred cccchhchHHHhHhhhhHHHHHHHHHHhccCC-CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHH
Q 037169 486 TEVQGERLKEAQNINRSLSALGDVISSLATKS-GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA 564 (860)
Q Consensus 486 t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA 564 (860)
+++.|.+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||+|+|+||+||||+..+++||++||+||
T Consensus 240 ~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a 319 (325)
T cd01369 240 TGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFG 319 (325)
T ss_pred cCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 037169 565 SRVRGV 570 (860)
Q Consensus 565 ~r~r~I 570 (860)
+|+++|
T Consensus 320 ~r~~~i 325 (325)
T cd01369 320 ARAKTI 325 (325)
T ss_pred HHhhcC
Confidence 999976
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=4.6e-70 Score=600.38 Aligned_cols=293 Identities=39% Similarity=0.556 Sum_probs=260.5
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEe-cC------------------------CCCCccceeEEEEecc-chhhHHHhhC
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDF-SA------------------------AKDGELGILTVDVFAD-ASPLVTSVLD 321 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~-~~------------------------~~~~~~~~~~~dVf~~-v~plV~~~l~ 321 (860)
||+|||||||+.+.|.... .++.. +. +..+.....+.+||.. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~--~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSS--SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCC--ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 7999999999988874321 11211 11 1111111222456666 7899999999
Q ss_pred CccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEE
Q 037169 322 GYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIR 401 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~ 401 (860)
|||+||||||||||||||||+|++.++||+||++++||+.+.... +.|.|++||+|||||.|+|||++. ...+.|+
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~ 154 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKELPIR 154 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCCceEE
Confidence 999999999999999999999999999999999999999886543 689999999999999999999853 4578999
Q ss_pred ecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcc
Q 037169 402 QASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSE 481 (860)
Q Consensus 402 ~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSE 481 (860)
++++|+++|+|++++.|.|++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999988753 33678999999999999
Q ss_pred cccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHH
Q 037169 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 482 r~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL 561 (860)
+..+++..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 037169 562 NFASRVR 568 (860)
Q Consensus 562 ~fA~r~r 568 (860)
+||+|+|
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=7.7e-70 Score=603.72 Aligned_cols=304 Identities=41% Similarity=0.652 Sum_probs=274.1
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecCC---------------CCCccceeEEEEecc-chhhHHHhhCCccEEEEeec
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAA---------------KDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYG 331 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~---------------~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYG 331 (860)
+|+||||+||+.+.|...+...++.+.+. ..+.....+.+||.. +.|+|+++++|||+||||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG 81 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYG 81 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeec
Confidence 69999999999999877666555544332 222222334567776 67999999999999999999
Q ss_pred cCCCCccccccCCC------CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCC-CCCceEEEecC
Q 037169 332 QTGTGKTFTMEGTQ------QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSP-TSKKLEIRQAS 404 (860)
Q Consensus 332 qTGSGKTyTM~G~~------~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~-~~~~l~i~~~~ 404 (860)
||||||||||+|+. .++|||||++++||+.+........|.|++||+|||||.++|||.+.. ....+.+++++
T Consensus 82 ~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~ 161 (341)
T cd01372 82 QTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDS 161 (341)
T ss_pred CCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECC
Confidence 99999999999974 579999999999999999877778999999999999999999998653 35689999999
Q ss_pred CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc----------CCceeEeeEEE
Q 037169 405 EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI----------NGECTKSKLWL 474 (860)
Q Consensus 405 ~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~----------~~~~~~skL~l 474 (860)
.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+.. ......|+|+|
T Consensus 162 ~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~ 241 (341)
T cd01372 162 KGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHF 241 (341)
T ss_pred CCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988763 34567899999
Q ss_pred eecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC---CcccCCCCcchhhcccccCCCcceeEEEecCCCC
Q 037169 475 VDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS---GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSE 551 (860)
Q Consensus 475 VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~ 551 (860)
|||||||+..++++.|.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||+++|+||+||||..
T Consensus 242 VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~ 321 (341)
T cd01372 242 VDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPAD 321 (341)
T ss_pred EECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCh
Confidence 9999999999999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHhhccc
Q 037169 552 QDLGETLSSLNFASRVRGVE 571 (860)
Q Consensus 552 ~~~~ETl~TL~fA~r~r~I~ 571 (860)
.+++||++||+||+|+++|+
T Consensus 322 ~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 322 SNFEETLNTLKYANRARNIK 341 (341)
T ss_pred hhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999985
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2e-69 Score=597.61 Aligned_cols=307 Identities=59% Similarity=0.866 Sum_probs=277.2
Q ss_pred CCCeEEEEEeCCCCchhhhCCCceEEEecCC--------------------CCCccceeEEEEeccchhhHHHhhCCccE
Q 037169 266 LGNIRVFCRCRPLSKEEASAGHAMVVDFSAA--------------------KDGELGILTVDVFADASPLVTSVLDGYNV 325 (860)
Q Consensus 266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~--------------------~~~~~~~~~~dVf~~v~plV~~~l~G~N~ 325 (860)
.|+||||||+||+.+.|.. ....++.++.. ..+.....+.+||..+.|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSEST-EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccC-CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 3899999999999988752 22222222222 11111222356777799999999999999
Q ss_pred EEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcC-CceEEEEEEEEEEeccccccccCCCC-CCCceEEEec
Q 037169 326 CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE-TFTYSISVSALEVYNEQIRDLLDTSP-TSKKLEIRQA 403 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~i~DLL~~~~-~~~~l~i~~~ 403 (860)
||||||+|||||||||+|+..++||+||++++||..+..... ++.|.|++||+|||||.++|||++.+ ..+.+.++++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 999999999999999999999999999999999999987654 68999999999999999999998653 3578999999
Q ss_pred CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccc
Q 037169 404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL 483 (860)
Q Consensus 404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~ 483 (860)
+.++++++|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||||||||+.
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~ 239 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERL 239 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999888788888999999999999999
Q ss_pred cccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHH
Q 037169 484 AKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNF 563 (860)
Q Consensus 484 ~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~f 563 (860)
.+.++.|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++||++||+|
T Consensus 240 ~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~ 319 (329)
T cd01366 240 KKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRF 319 (329)
T ss_pred ccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccc
Q 037169 564 ASRVRGVELS 573 (860)
Q Consensus 564 A~r~r~I~~~ 573 (860)
|+++++|+++
T Consensus 320 a~~~~~i~~~ 329 (329)
T cd01366 320 ASRVRSVELG 329 (329)
T ss_pred HHHhhcccCC
Confidence 9999999864
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.1e-69 Score=594.33 Aligned_cols=298 Identities=40% Similarity=0.606 Sum_probs=266.3
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecC-----------------CCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSA-----------------AKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA 329 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~-----------------~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa 329 (860)
||+||||+||+...|... ...++.++. +..+.....+.+||.. +.|+|+++++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~-~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESDN-EQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCcccccC-CcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 799999999999887632 222222222 1222222333557766 689999999999999999
Q ss_pred eccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceE
Q 037169 330 YGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHH 409 (860)
Q Consensus 330 YGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~ 409 (860)
||||||||||||+|+..++||+||++++||..+.... ...|.|++||+|||||.|+|||++. ...+.+++++.++++
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~--~~~l~i~~~~~~~~~ 156 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPS--PQELRIREDPNKGVV 156 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCC--CCCceEEECCCCCEE
Confidence 9999999999999999999999999999999997655 4589999999999999999999854 367999999999999
Q ss_pred ecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---CceeEeeEEEeecCCccccccc
Q 037169 410 VPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN---GECTKSKLWLVDLAGSERLAKT 486 (860)
Q Consensus 410 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t 486 (860)
++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|....... +....|+|+|||||||||..+.
T Consensus 157 v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~ 236 (321)
T cd01374 157 VAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQT 236 (321)
T ss_pred eCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999887655 5677899999999999999998
Q ss_pred ccchhchHHHhHhhhhHHHHHHHHHHhccCC--CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHH
Q 037169 487 EVQGERLKEAQNINRSLSALGDVISSLATKS--GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFA 564 (860)
Q Consensus 487 ~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~--~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA 564 (860)
+ .+.+++|+.+||+||++|++||.+|+.+. .|||||+||||+||+++|||+++|+||+||||...+++||++||+||
T Consensus 237 ~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a 315 (321)
T cd01374 237 G-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFA 315 (321)
T ss_pred C-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHH
Confidence 8 89999999999999999999999999975 99999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 037169 565 SRVRGV 570 (860)
Q Consensus 565 ~r~r~I 570 (860)
+|++.|
T Consensus 316 ~r~~~i 321 (321)
T cd01374 316 SRAKKV 321 (321)
T ss_pred HHHhcC
Confidence 999876
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6.7e-69 Score=594.54 Aligned_cols=299 Identities=45% Similarity=0.668 Sum_probs=264.7
Q ss_pred CeEEEEEeCCCCchhhhC------CCce------------------EEEecCCCCCccceeEEEEecc-chhhHHHhhCC
Q 037169 268 NIRVFCRCRPLSKEEASA------GHAM------------------VVDFSAAKDGELGILTVDVFAD-ASPLVTSVLDG 322 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~------~~~~------------------~v~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G 322 (860)
.||||||+||+...+... +... --.|.++..++. ..+.+||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 489999999998744321 0000 011333334444 455678877 57999999999
Q ss_pred ccEEEEeeccCCCCccccccCCC---CCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCC----CC
Q 037169 323 YNVCIFAYGQTGTGKTFTMEGTQ---QNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSP----TS 395 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~G~~---~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~----~~ 395 (860)
||+||||||||||||||||+|+. .++||+||++++||+.++... +..|.|++||+|||||.++|||++.+ ..
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~ 158 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEALESL 158 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccccccC
Confidence 99999999999999999999986 478999999999999997654 46899999999999999999998764 34
Q ss_pred CceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEe--eccCCceeEeeEE
Q 037169 396 KKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK--NLINGECTKSKLW 473 (860)
Q Consensus 396 ~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~--~~~~~~~~~skL~ 473 (860)
+.+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+. .........|+|+
T Consensus 159 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~ 238 (334)
T cd01375 159 PAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLN 238 (334)
T ss_pred CceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999987 3344456789999
Q ss_pred EeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCC-CcccCCCCcchhhcccccCCCcceeEEEecCCCCC
Q 037169 474 LVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS-GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQ 552 (860)
Q Consensus 474 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 552 (860)
|||||||||..++++.|.+++|+..||+||++|++||.+|+.++ .||||||||||+||+|+|||+|+|+||+||||...
T Consensus 239 ~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~ 318 (334)
T cd01375 239 LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPS 318 (334)
T ss_pred EEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHhh
Q 037169 553 DLGETLSSLNFASRVR 568 (860)
Q Consensus 553 ~~~ETl~TL~fA~r~r 568 (860)
+++||++||+||+|++
T Consensus 319 ~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 319 NLDETLSTLRFAQRVA 334 (334)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999984
No 22
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-68 Score=606.09 Aligned_cols=309 Identities=38% Similarity=0.592 Sum_probs=270.3
Q ss_pred CCCeEEEEEeCCCCchhhhCCCceEEE--------------------------ecCCCCCccceeEEEEecc-chhhHHH
Q 037169 266 LGNIRVFCRCRPLSKEEASAGHAMVVD--------------------------FSAAKDGELGILTVDVFAD-ASPLVTS 318 (860)
Q Consensus 266 ~gnIrV~~RvRP~~~~E~~~~~~~~v~--------------------------~~~~~~~~~~~~~~dVf~~-v~plV~~ 318 (860)
+..+.||||+||+.....+.|+..+++ |.+.+.|+....+.|||+. +.|+|.+
T Consensus 30 ~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~d 109 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKD 109 (809)
T ss_pred hcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHH
Confidence 467899999999885333333333322 3333444445555778877 7899999
Q ss_pred hhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh---------------------------------
Q 037169 319 VLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER--------------------------------- 365 (860)
Q Consensus 319 ~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~--------------------------------- 365 (860)
++.|.|..+|+||.|||||||||+|++.++||+||+++.||..++..
T Consensus 110 lLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~ 189 (809)
T KOG0247|consen 110 LLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAML 189 (809)
T ss_pred HHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999865321
Q ss_pred -------------------------------cCCceEEEEEEEEEEeccccccccCCCCCC----CceEEEecCCCceEe
Q 037169 366 -------------------------------KETFTYSISVSALEVYNEQIRDLLDTSPTS----KKLEIRQASEGFHHV 410 (860)
Q Consensus 366 -------------------------------~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~----~~l~i~~~~~g~~~v 410 (860)
+.+..|+|+|||+|||||.|||||.+.+.. +...++++.+|..||
T Consensus 190 nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~V 269 (809)
T KOG0247|consen 190 NDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYV 269 (809)
T ss_pred ccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeee
Confidence 123579999999999999999999876542 225678999999999
Q ss_pred cCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeecc--CCceeEeeEEEeecCCccccccccc
Q 037169 411 PGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLI--NGECTKSKLWLVDLAGSERLAKTEV 488 (860)
Q Consensus 411 ~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~--~~~~~~skL~lVDLAGSEr~~~t~~ 488 (860)
.|+++|.|.+.+|++++|+.|.++|++++|.+|..|||||+||+|.+.+.+.. .+..+.|.|+|||||||||..++++
T Consensus 270 kgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~ 349 (809)
T KOG0247|consen 270 KGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQN 349 (809)
T ss_pred ccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccc
Confidence 99999999999999999999999999999999999999999999999887765 5667899999999999999999999
Q ss_pred chhchHHHhHhhhhHHHHHHHHHHhccC-----CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHH
Q 037169 489 QGERLKEAQNINRSLSALGDVISSLATK-----SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNF 563 (860)
Q Consensus 489 ~g~rlkE~~~INkSL~aLg~vI~aL~~~-----~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~f 563 (860)
.|.||+||++||.||.+||+||.+|+.+ +.+|||||||||++++.+|.|.++.+||+||+|.+.+|+|+++.|+|
T Consensus 350 sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkF 429 (809)
T KOG0247|consen 350 SGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKF 429 (809)
T ss_pred hhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999863 36999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccc
Q 037169 564 ASRVRGVELSP 574 (860)
Q Consensus 564 A~r~r~I~~~p 574 (860)
|+.+..|.+.+
T Consensus 430 aeiaq~v~v~~ 440 (809)
T KOG0247|consen 430 AEIAQEVEVAR 440 (809)
T ss_pred HHhcccccccC
Confidence 99999997654
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.7e-66 Score=571.98 Aligned_cols=307 Identities=53% Similarity=0.773 Sum_probs=277.3
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecCCCC-----------CccceeE-----------EEEecc-chhhHHHhhCCcc
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAAKD-----------GELGILT-----------VDVFAD-ASPLVTSVLDGYN 324 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~-----------~~~~~~~-----------~dVf~~-v~plV~~~l~G~N 324 (860)
+|+|+|||||+...|...+...++.+..... +....+. .+||.. +.|+|+++++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 6899999999999987766555555543311 1111222 345554 5799999999999
Q ss_pred EEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecC
Q 037169 325 VCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQAS 404 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~ 404 (860)
+||||||+|||||||||+|++.++||+||++++||+.+........|+|++||+|||||.++|||++. .+.+.+++++
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l~i~~~~ 158 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKLEIREDK 158 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCcEEEECC
Confidence 99999999999999999999999999999999999999887767899999999999999999999854 5679999999
Q ss_pred CCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEe--eccCCceeEeeEEEeecCCccc
Q 037169 405 EGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAK--NLINGECTKSKLWLVDLAGSER 482 (860)
Q Consensus 405 ~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~--~~~~~~~~~skL~lVDLAGSEr 482 (860)
.+++++.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||||||||+
T Consensus 159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999966 5556667899999999999999
Q ss_pred ccccccchhchHHHhHhhhhHHHHHHHHHHhcc--CCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHH
Q 037169 483 LAKTEVQGERLKEAQNINRSLSALGDVISSLAT--KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSS 560 (860)
Q Consensus 483 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~--~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~T 560 (860)
..+.++.|.+++|+..||+||.+|++||.+|+. +..|||||+|+||+||+++|||+++|+||+||||...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 999999999999999999999999999999998 677999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccc
Q 037169 561 LNFASRVRGVELSPAR 576 (860)
Q Consensus 561 L~fA~r~r~I~~~p~~ 576 (860)
|+||+++++|++.|.+
T Consensus 319 L~~a~~~~~i~~~p~~ 334 (335)
T smart00129 319 LRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHhhcccCCCc
Confidence 9999999999999965
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.3e-65 Score=568.25 Aligned_cols=297 Identities=47% Similarity=0.713 Sum_probs=262.9
Q ss_pred EeCCCCchhhhCCCceEEEec-----------------------CCCCCccceeEEEEecc-chhhHHHhhCCccEEEEe
Q 037169 274 RCRPLSKEEASAGHAMVVDFS-----------------------AAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFA 329 (860)
Q Consensus 274 RvRP~~~~E~~~~~~~~v~~~-----------------------~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~Ifa 329 (860)
||||+++.|...+....+... ++..+.....+.+||.. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999999887766544332 11111111122456666 699999999999999999
Q ss_pred eccCCCCccccccCC--CCCCCchhhHHHHHHHHHHHhcCC--ceEEEEEEEEEEeccccccccCCCC--CCCceEEEec
Q 037169 330 YGQTGTGKTFTMEGT--QQNRGVNYRTLELLFKIAEERKET--FTYSISVSALEVYNEQIRDLLDTSP--TSKKLEIRQA 403 (860)
Q Consensus 330 YGqTGSGKTyTM~G~--~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYnE~i~DLL~~~~--~~~~l~i~~~ 403 (860)
||+|||||||||+|+ ..++||+||++++||..+...... +.|.|+|||+|||||.|+|||++.+ ..+.+.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 899999999999999999987664 7999999999999999999999763 3468999999
Q ss_pred CCCc-eEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCc----eeEeeEEEeecC
Q 037169 404 SEGF-HHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGE----CTKSKLWLVDLA 478 (860)
Q Consensus 404 ~~g~-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~----~~~skL~lVDLA 478 (860)
+..+ ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+....... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 9865 99999999999999999999999999999999999999999999999999998876654 478999999999
Q ss_pred Cccccccccc-chhchHHHhHhhhhHHHHHHHHHHhccC--CCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHH
Q 037169 479 GSERLAKTEV-QGERLKEAQNINRSLSALGDVISSLATK--SGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLG 555 (860)
Q Consensus 479 GSEr~~~t~~-~g~rlkE~~~INkSL~aLg~vI~aL~~~--~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ 555 (860)
|||+..+.++ .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999999886 4888999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcc
Q 037169 556 ETLSSLNFASRVRGV 570 (860)
Q Consensus 556 ETl~TL~fA~r~r~I 570 (860)
||++||+||++++.|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999986
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.1e-64 Score=559.18 Aligned_cols=300 Identities=50% Similarity=0.736 Sum_probs=266.8
Q ss_pred CeEEEEEeCCCCchhhhCCCceEEEecCC----------------------CCCccceeEEEEecc-chhhHHHhhCCcc
Q 037169 268 NIRVFCRCRPLSKEEASAGHAMVVDFSAA----------------------KDGELGILTVDVFAD-ASPLVTSVLDGYN 324 (860)
Q Consensus 268 nIrV~~RvRP~~~~E~~~~~~~~v~~~~~----------------------~~~~~~~~~~dVf~~-v~plV~~~l~G~N 324 (860)
+|+||||+||+...|.. +...++.++.. ..+.....+.+||.. +.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 69999999999887622 22223333221 111111222446655 5699999999999
Q ss_pred EEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcC-CceEEEEEEEEEEeccccccccCCCCCCCceEEEec
Q 037169 325 VCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKE-TFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQA 403 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~ 403 (860)
+||||||+|||||||||+|+..++||+||++++||+.+..... ...|.|++||+|||+|.|+|||++.+....+.++++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 9999999999999999999999999999999999999987653 568999999999999999999986544678999999
Q ss_pred CCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCc--eeEeeEEEeecCCcc
Q 037169 404 SEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGE--CTKSKLWLVDLAGSE 481 (860)
Q Consensus 404 ~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~--~~~skL~lVDLAGSE 481 (860)
+.+++++.|++++.|.|++|++.++..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+||||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999998876655 789999999999999
Q ss_pred cccccccchhchHHHhHhhhhHHHHHHHHHHhccCC--CcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHH
Q 037169 482 RLAKTEVQGERLKEAQNINRSLSALGDVISSLATKS--GHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLS 559 (860)
Q Consensus 482 r~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~--~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~ 559 (860)
+..+++..+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||||...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 037169 560 SLNFASRVR 568 (860)
Q Consensus 560 TL~fA~r~r 568 (860)
||+||+|+|
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999985
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-63 Score=547.60 Aligned_cols=303 Identities=32% Similarity=0.496 Sum_probs=261.2
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCC--------------------------CCccceeEEEEecc-chhhHHHh
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAK--------------------------DGELGILTVDVFAD-ASPLVTSV 319 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~--------------------------~~~~~~~~~dVf~~-v~plV~~~ 319 (860)
-.|.|+||-||++..|.......+++..... .++-...+.+||.- +.|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 5799999999999999766555455432111 11111112334532 79999999
Q ss_pred hCCccEEEEeeccCCCCccccccCCCC------CCCchhhHHHHHHHHHHH-hcCCceEEEEEEEEEEeccccccccCCC
Q 037169 320 LDGYNVCIFAYGQTGTGKTFTMEGTQQ------NRGVNYRTLELLFKIAEE-RKETFTYSISVSALEVYNEQIRDLLDTS 392 (860)
Q Consensus 320 l~G~N~~IfaYGqTGSGKTyTM~G~~~------~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 392 (860)
|+|--+|+||||||||||||||.|+-. ..||..++.+++|..+.. .-....+.|++||||||+.++||||+.
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 999999999999999999999988742 359999999999999875 233467899999999999999999974
Q ss_pred CCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeE
Q 037169 393 PTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKL 472 (860)
Q Consensus 393 ~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL 472 (860)
.++|.+.+|.++.+.|.||++..|.+.+|++++|..|+..|+++.|..|.+|||||+||+|.+.... +....|++
T Consensus 367 --k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKf 441 (676)
T KOG0246|consen 367 --KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKF 441 (676)
T ss_pred --ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEE
Confidence 5789999999999999999999999999999999999999999999999999999999999997642 24678999
Q ss_pred EEeecCCccccccccc-chhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCC-CcceeEEEecCCC
Q 037169 473 WLVDLAGSERLAKTEV-QGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGG-DSKTLMFLQISPS 550 (860)
Q Consensus 473 ~lVDLAGSEr~~~t~~-~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgG-nskT~mI~~VSP~ 550 (860)
+||||||+||...+.. ..+...|+..|||||+||..||.||...+.|+|||.||||++|+|||=| ||+|+||+||||.
T Consensus 442 SlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg 521 (676)
T KOG0246|consen 442 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPG 521 (676)
T ss_pred EEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCC
Confidence 9999999999987654 4556679999999999999999999999999999999999999999977 9999999999999
Q ss_pred CCCHHhHHHHHHHHHHhhccccccc
Q 037169 551 EQDLGETLSSLNFASRVRGVELSPA 575 (860)
Q Consensus 551 ~~~~~ETl~TL~fA~r~r~I~~~p~ 575 (860)
..+++.||+|||||.|+|.....+.
T Consensus 522 ~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 522 ISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred cchhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999998765443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-63 Score=580.15 Aligned_cols=323 Identities=41% Similarity=0.603 Sum_probs=281.6
Q ss_pred eCCCCchhhhCCCceEEEecCCCC----CccceeEEE-Eec----------c-chhhHHHhhCCccEEEEeeccCCCCcc
Q 037169 275 CRPLSKEEASAGHAMVVDFSAAKD----GELGILTVD-VFA----------D-ASPLVTSVLDGYNVCIFAYGQTGTGKT 338 (860)
Q Consensus 275 vRP~~~~E~~~~~~~~v~~~~~~~----~~~~~~~~d-Vf~----------~-v~plV~~~l~G~N~~IfaYGqTGSGKT 338 (860)
|||+...|...|+..++.|.+... +.-..+++| ||. . |.|+++.+|+|||++++||||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkT 80 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKT 80 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCce
Confidence 699999999999988888654321 111223333 332 2 789999999999999999999999999
Q ss_pred ccccCC----CCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceEecCee
Q 037169 339 FTMEGT----QQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGLT 414 (860)
Q Consensus 339 yTM~G~----~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~v~gl~ 414 (860)
|||.+. ..+.|+|||++.++|..+..... +.|.|.|||+|||++.|+|||.+......+.+++ +.|.+.++|++
T Consensus 81 ytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glt 158 (913)
T KOG0244|consen 81 YTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLT 158 (913)
T ss_pred eecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeeh
Confidence 999876 23459999999999999987655 7899999999999999999998654445577777 78989999999
Q ss_pred EEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEee-ccCCceeEeeEEEeecCCcccccccccchhch
Q 037169 415 EAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKN-LINGECTKSKLWLVDLAGSERLAKTEVQGERL 493 (860)
Q Consensus 415 e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~-~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl 493 (860)
++.|.+..++...+..|...|++++|+||..|||||+||++.+++.. .......+++|+|||||||||.++|+++|+|+
T Consensus 159 e~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrl 238 (913)
T KOG0244|consen 159 EKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRL 238 (913)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999998743 33334567999999999999999999999999
Q ss_pred HHHhHhhhhHHHHHHHHHHhccCCC--cccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhccc
Q 037169 494 KEAQNINRSLSALGDVISSLATKSG--HIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVE 571 (860)
Q Consensus 494 kE~~~INkSL~aLg~vI~aL~~~~~--hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~ 571 (860)
+|+.+||.+|++||+||+||..... ||||||||||+||||+||||+.|+||+||||+..+++||++||+||.|++.|+
T Consensus 239 KEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~ik 318 (913)
T KOG0244|consen 239 KEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIK 318 (913)
T ss_pred hhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhc
Confidence 9999999999999999999987554 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccC-hHHHHHHHHHHHHHHHHhc
Q 037169 572 LSPARKQID-ISKLQKVKMMLEKTKQEVG 599 (860)
Q Consensus 572 ~~p~~~~~~-~~~~~~lk~~l~~~k~e~~ 599 (860)
|+|..++.. ..++..++.+++.++.++-
T Consensus 319 nk~vvN~d~~~~~~~~lK~ql~~l~~ell 347 (913)
T KOG0244|consen 319 NKPVVNQDPKSFEMLKLKAQLEPLQVELL 347 (913)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998843 3467778888877766654
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.2e-57 Score=528.15 Aligned_cols=331 Identities=40% Similarity=0.584 Sum_probs=288.4
Q ss_pred cCCCeEEEEEeCCCCchhhhC---------CCce-EEEecCCCCCccceeEEEEecc-chhhHHHhhCCccEEEEeeccC
Q 037169 265 VLGNIRVFCRCRPLSKEEASA---------GHAM-VVDFSAAKDGELGILTVDVFAD-ASPLVTSVLDGYNVCIFAYGQT 333 (860)
Q Consensus 265 ~~gnIrV~~RvRP~~~~E~~~---------~~~~-~v~~~~~~~~~~~~~~~dVf~~-v~plV~~~l~G~N~~IfaYGqT 333 (860)
...+++++++..|-...+... .... ...|.+++.+.....+.+||.. +.|++++++.||||||||||||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqT 99 (568)
T COG5059 20 SVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQT 99 (568)
T ss_pred eecCceEEEeecCCCcchheeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEccc
Confidence 358899999999965542100 0111 2234445555666667788877 7899999999999999999999
Q ss_pred CCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccccCCCCCCCceEEEecCCCceEecCe
Q 037169 334 GTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLLDTSPTSKKLEIRQASEGFHHVPGL 413 (860)
Q Consensus 334 GSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~l~i~~~~~g~~~v~gl 413 (860)
||||||||.|...++||||+++..||+.+.....+..|.|.+||+|||||.++|||.+.... +.++++..+++.|.|+
T Consensus 100 gsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~~~~~~~~~v~v~~l 177 (568)
T COG5059 100 GSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LNIREDSLLGVKVAGL 177 (568)
T ss_pred CCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--ccccccCCCceEeecc
Confidence 99999999999999999999999999999987767789999999999999999999864433 7788999999999999
Q ss_pred eEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccccccccchhch
Q 037169 414 TEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERLAKTEVQGERL 493 (860)
Q Consensus 414 ~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl 493 (860)
++..+.+.+|++.+|..|..+|+++.|.+|..|||||+||++.+.+.+...+....++|+||||||||+...++..+.|+
T Consensus 178 ~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 178 TEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred eEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchh
Confidence 99999999999999999999999999999999999999999999999887777777899999999999999999999999
Q ss_pred HHHhHhhhhHHHHHHHHHHhcc--CCCcccCCCCcchhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhccc
Q 037169 494 KEAQNINRSLSALGDVISSLAT--KSGHIPYRNSKLTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRGVE 571 (860)
Q Consensus 494 kE~~~INkSL~aLg~vI~aL~~--~~~hVPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~I~ 571 (860)
+|+..||+||.+||+||.+|.. +..|||||+|||||||+++|||+++|+|||||+|...+++||++||+||.|++.|+
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~ 337 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIK 337 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999997 78899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc--cChHHHHHHHHHHHHHHHH
Q 037169 572 LSPARKQ--IDISKLQKVKMMLEKTKQE 597 (860)
Q Consensus 572 ~~p~~~~--~~~~~~~~lk~~l~~~k~e 597 (860)
+.+..+. ....++..++..+...+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 365 (568)
T COG5059 338 NKIQVNSSSDSSREIEEIKFDLSEDRSE 365 (568)
T ss_pred CcccccCcCcchHHHHHHHhhhhhhhhh
Confidence 9988774 2233444444444444333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4e-51 Score=417.14 Aligned_cols=176 Identities=55% Similarity=0.846 Sum_probs=169.1
Q ss_pred EeccchhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEecccccc
Q 037169 308 VFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRD 387 (860)
Q Consensus 308 Vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~D 387 (860)
||..+.|+|+.+++|||+||||||||||||||||+|++.++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 89987799999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccC---
Q 037169 388 LLDTSPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLIN--- 464 (860)
Q Consensus 388 LL~~~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~--- 464 (860)
++.++..|..+|.+++|.+|..|||||+||+|++...+...
T Consensus 58 ------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~ 101 (186)
T cd01363 58 ------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASAT 101 (186)
T ss_pred ------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCc
Confidence 88999999999999999999999999999999999877654
Q ss_pred CceeEeeEEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhccCCCcccCCCCcchhhcccccCCCcceeEE
Q 037169 465 GECTKSKLWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLATKSGHIPYRNSKLTHLLQDSLGGDSKTLMF 544 (860)
Q Consensus 465 ~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSKLT~LLqdsLgGnskT~mI 544 (860)
+....|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i 181 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMV 181 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEE
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 037169 545 LQISP 549 (860)
Q Consensus 545 ~~VSP 549 (860)
+||||
T Consensus 182 ~~vsP 186 (186)
T cd01363 182 ACISP 186 (186)
T ss_pred EEeCc
Confidence 99999
No 30
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.83 E-value=6.7e-21 Score=192.92 Aligned_cols=98 Identities=41% Similarity=0.700 Sum_probs=73.2
Q ss_pred cccccccccc--CceEEEeeCCCCcEEEEEEeeecccCC----CCCcceEEEEEECCEEEeeccchhhccCCCc-ceEE-
Q 037169 2 AVLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNAN----GPKGMRVFDVFMQEEKVLLEIDIYSIVGANK-PLQV- 73 (860)
Q Consensus 2 p~lYqTaR~g--~~sY~f~~v~~G~Y~V~LhFaEi~~~~----~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~-a~~~- 73 (860)
+.||||+|+| .|+|.||.+++|.|.|+|||||+++.. ..+|+|+|||+|||++++++|||++++|+.. +++.
T Consensus 56 ~~Lyqt~R~g~~~f~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~ 135 (174)
T PF11721_consen 56 DPLYQTERYGPSSFSYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRR 135 (174)
T ss_dssp HHTTT-----SSSEEEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEE
T ss_pred hhhhHhhcCCCCceEEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEE
Confidence 4699999998 789999779999999999999999984 4499999999999999999999999999876 6666
Q ss_pred E-EEEEeeCCCceEEEEEE------------ccCCCcEEEEE
Q 037169 74 V-DVRVSVGMDEVLLIRFD------------GACGSPIVNGI 102 (860)
Q Consensus 74 ~-~~~V~~~~~g~L~I~F~------------~~~g~p~InaI 102 (860)
+ .+.|+ ||.|+|.|. +..++|+||||
T Consensus 136 ~~~v~v~---dg~L~i~f~~~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 136 FFNVTVT---DGTLNIQFVWAGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEEEEEE---TTEEETTEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred EEEEEEe---CCcEEEEEEecCCCcEEeeccccCCCcEEeeC
Confidence 3 56665 899999998 88999999998
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=172.06 Aligned_cols=106 Identities=33% Similarity=0.474 Sum_probs=86.2
Q ss_pred ccccccccc-----CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCC-cceEE-EE
Q 037169 3 VLYQSARFG-----NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGAN-KPLQV-VD 75 (860)
Q Consensus 3 ~lYqTaR~g-----~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~-~a~~~-~~ 75 (860)
.||||||.+ +++|.|+..++|.|+|+|||||+.......++|+|||+|||+.++++|||....|.. .+++. +.
T Consensus 253 ~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~ 332 (623)
T PLN03150 253 SLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKT 332 (623)
T ss_pred HHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeE
Confidence 389999883 488999655778999999999998655567999999999999999999997766654 44444 44
Q ss_pred EEEeeCCCceEEEEEEccCCC-cEEEEEEEeecCCCC
Q 037169 76 VRVSVGMDEVLLIRFDGACGS-PIVNGICIKNATNVP 111 (860)
Q Consensus 76 ~~V~~~~~g~L~I~F~~~~g~-p~InaIEI~k~~~~~ 111 (860)
+.++ +|.|+|+|.|..+. |+||||||++..+..
T Consensus 333 v~~~---~g~l~isl~p~~~s~pilNaiEI~~~~~~~ 366 (623)
T PLN03150 333 VAVS---GRTLTIVLQPKKGTHAIINAIEVFEIITAE 366 (623)
T ss_pred Eeec---CCeEEEEEeeCCCCcceeeeeeeeeccccc
Confidence 4444 58899999988776 999999999987743
No 32
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.19 E-value=4.5e-11 Score=133.90 Aligned_cols=102 Identities=25% Similarity=0.350 Sum_probs=73.2
Q ss_pred cccccccc-c------CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECCEEEeeccchhhccCCCcceEE-E
Q 037169 3 VLYQSARF-G------NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKVLLEIDIYSIVGANKPLQV-V 74 (860)
Q Consensus 3 ~lYqTaR~-g------~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~~~-~ 74 (860)
.||+||+. + +++|.| +.++..|.|+||||||.......++|+|||+|||+.+.++++.....+...++.. +
T Consensus 235 ~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~ 313 (347)
T PF12819_consen 235 AVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDY 313 (347)
T ss_pred HHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecce
Confidence 48999988 2 355776 4444589999999999986546678999999999998875555222222233333 4
Q ss_pred EEEEeeCCCceEEEEEEccCCC---cEEEEEEEeec
Q 037169 75 DVRVSVGMDEVLLIRFDGACGS---PIVNGICIKNA 107 (860)
Q Consensus 75 ~~~V~~~~~g~L~I~F~~~~g~---p~InaIEI~k~ 107 (860)
.+.+. ..+.+.|++.+..++ |+|||+||++.
T Consensus 314 ~~~~~--~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 314 VVNVP--DSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred EEEec--CCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 44444 456799999877665 99999999973
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=2.1e-08 Score=120.80 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=77.4
Q ss_pred ccccccccccC------ceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECC---EEEeeccchhhccCCCcceE
Q 037169 2 AVLYQSARFGN------FSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQE---EKVLLEIDIYSIVGANKPLQ 72 (860)
Q Consensus 2 p~lYqTaR~g~------~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing---~~vl~~fDI~~~~G~~~a~~ 72 (860)
+.+|+|+|+.+ +.|.||..++|.|+||+||....+.+.. ...+|||+++| .+++.+|+.. ...++
T Consensus 66 ~~~~~t~R~F~~~~g~~~cY~~~~~~~g~ylVRl~F~~~~y~~~~-~~~~Fdv~~~~~~~~tv~~~~~~~-----~~~v~ 139 (623)
T PLN03150 66 APPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFD-SEPLFDVSVEGTQISSLKSGWSSH-----DEQVF 139 (623)
T ss_pred cchhhccccCCcccccccceEeeecCCCcEEEEEEeecCCcCCCC-CCCceEEEECcEEEEEEecCcccC-----CCcEE
Confidence 35799999944 5799977888999999999998766533 56789999999 5566666532 12344
Q ss_pred E-EEEEEeeCCCceEEEEEEccC-CCcEEEEEEEeecCCCC
Q 037169 73 V-VDVRVSVGMDEVLLIRFDGAC-GSPIVNGICIKNATNVP 111 (860)
Q Consensus 73 ~-~~~~V~~~~~g~L~I~F~~~~-g~p~InaIEI~k~~~~~ 111 (860)
+ +.+.++ ++.|.|.|.+.. +.||||||||.+.|..-
T Consensus 140 ~E~i~~~~---~~~l~vcf~~~~~~~pFIs~iEv~~l~~~~ 177 (623)
T PLN03150 140 AEALVFLT---DGSASICFHSTGHGDPAILSIEILQVDDKA 177 (623)
T ss_pred EEEEEEec---CCcEEEEEecCCCCCCceeEEEEEEcCccc
Confidence 4 666666 778999998754 67999999999998643
No 34
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.74 E-value=4e-09 Score=111.34 Aligned_cols=109 Identities=28% Similarity=0.397 Sum_probs=90.5
Q ss_pred ccccccccc--CceEEEeeCCCCcEEEEEEeeecccCCCCCcceEEEEEEC-CEEEeeccchhhccC-CCcceEE-EEE-
Q 037169 3 VLYQSARFG--NFSYRIGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQ-EEKVLLEIDIYSIVG-ANKPLQV-VDV- 76 (860)
Q Consensus 3 ~lYqTaR~g--~~sY~f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~in-g~~vl~~fDI~~~~G-~~~a~~~-~~~- 76 (860)
.+|||+||. .|+|..|....|+|.+.|.|||.+|. .++..+|||.+| +..+++++||+.++| .++|... ..+
T Consensus 109 ily~ter~neetFgyd~pik~dgdyalvlkfaevyF~--~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~ 186 (355)
T KOG3593|consen 109 ILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVYFK--TCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCL 186 (355)
T ss_pred hhhhhcccchhhhcccccccCCCceehhhhHHHHHHH--hhhhhheeeeeccceeEEeccchhhhcCCCcccccceEEEE
Confidence 589999994 58899977789999999999999998 889999999999 899999999999988 4555443 222
Q ss_pred ----------EEeeCCCceEEEEE-EccCCCcEEEEEEEeecCCCCCC
Q 037169 77 ----------RVSVGMDEVLLIRF-DGACGSPIVNGICIKNATNVPES 113 (860)
Q Consensus 77 ----------~V~~~~~g~L~I~F-~~~~g~p~InaIEI~k~~~~~~~ 113 (860)
.++....|.|+|.| ++..++|.+||..|+.+.--.+|
T Consensus 187 i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g~v~dvP 234 (355)
T KOG3593|consen 187 IGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVGTVGDVP 234 (355)
T ss_pred EcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhccccccc
Confidence 22333468899999 68889999999999998777666
No 35
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.46 E-value=5.7e-10 Score=132.24 Aligned_cols=247 Identities=27% Similarity=0.317 Sum_probs=147.3
Q ss_pred HHhhhhhccCCCeEEEEEeCCCCchhhhC-----------CCceEEEecC--CCCCcccee-----------EEEEeccc
Q 037169 257 NKMVSTIQVLGNIRVFCRCRPLSKEEASA-----------GHAMVVDFSA--AKDGELGIL-----------TVDVFADA 312 (860)
Q Consensus 257 ~~~~~~~~~~gnIrV~~RvRP~~~~E~~~-----------~~~~~v~~~~--~~~~~~~~~-----------~~dVf~~v 312 (860)
+.|++.++...+++|+|+|+|.+...... .-...+.... ....+...+ ...+|.+.
T Consensus 295 RlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 374 (568)
T COG5059 295 RLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ 374 (568)
T ss_pred HHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 45666777667999999999988442111 0001111110 000111111 12345556
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHh-cCCceEEEEEEEEEEeccccccccCC
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEER-KETFTYSISVSALEVYNEQIRDLLDT 391 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~i~DLL~~ 391 (860)
.-+++..++| +++||++++|+++||. ....++..-.+...|...... ...|.|...+-++++|-....++...
T Consensus 375 ~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e 448 (568)
T COG5059 375 SQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE 448 (568)
T ss_pred Hhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888 9999999999999995 233455566657777765542 33456666666667762222222221
Q ss_pred CCCCCceEEEecCCCceEecCeeEEEeCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEee
Q 037169 392 SPTSKKLEIRQASEGFHHVPGLTEAKIENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSK 471 (860)
Q Consensus 392 ~~~~~~l~i~~~~~g~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~sk 471 (860)
........+............+.........+..... .+...+..+++..|.+++++|++|+......+...+...
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (568)
T COG5059 449 ELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS--- 524 (568)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhHHHH---
Confidence 1111100000000000000000011111111222222 467788899999999999999999887765544333322
Q ss_pred EEEeecCCcccccccccchhchHHHhHhhhhHHHHHHHHHHhc
Q 037169 472 LWLVDLAGSERLAKTEVQGERLKEAQNINRSLSALGDVISSLA 514 (860)
Q Consensus 472 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~ 514 (860)
+++|||||+||. -+.+-|.++++...+|++|..++++|.++.
T Consensus 525 ~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 525 LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 899999999999 999999999999999999999999998864
No 36
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.41 E-value=1.3e-06 Score=98.12 Aligned_cols=107 Identities=19% Similarity=0.276 Sum_probs=73.9
Q ss_pred ccccccccccC----ceEEEeeCCC--CcEEEEEEeeecccCCCC----CcceEEEEEECCEEEeeccchhhccCCCcce
Q 037169 2 AVLYQSARFGN----FSYRIGNLSP--GDYLVDLHFAEIVNANGP----KGMRVFDVFMQEEKVLLEIDIYSIVGANKPL 71 (860)
Q Consensus 2 p~lYqTaR~g~----~sY~f~~v~~--G~Y~V~LhFaEi~~~~~~----~g~RvFdV~ing~~vl~~fDI~~~~G~~~a~ 71 (860)
+.+|+|+|..+ ..|.|+..++ |.|+|||||.-..+.+.. ...-.||+++++... ..+++.. ....++
T Consensus 48 ~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~-~tV~~~~--~~~~~~ 124 (347)
T PF12819_consen 48 SPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFW-STVNLSN--SPSSPV 124 (347)
T ss_pred ccccceEEEcCCCCccEEEeeccCCCCceEEEEEEeccccccccccccccCCcceEEEECCcee-EEEEecC--CCcceE
Confidence 46899999943 7799976643 499999999986655221 123468888888763 3333322 111334
Q ss_pred EE-EEEEEeeCCCceEEEEEEccC-CC-cEEEEEEEeecCCCCCC
Q 037169 72 QV-VDVRVSVGMDEVLLIRFDGAC-GS-PIVNGICIKNATNVPES 113 (860)
Q Consensus 72 ~~-~~~~V~~~~~g~L~I~F~~~~-g~-p~InaIEI~k~~~~~~~ 113 (860)
++ +.+.|. .++.|.|.|.+.. |. ||||||||++.|..--|
T Consensus 125 ~~E~ii~v~--~~~~l~vclv~~~~g~~pFIsaiEl~~lp~~ly~ 167 (347)
T PF12819_consen 125 VKEFIINVT--WSDTLSVCLVPTGSGTFPFISAIELRPLPDSLYP 167 (347)
T ss_pred EEEEEEEEc--CCCcEEEEEEeCCCCCCCceeEEEEEECCcccee
Confidence 44 566665 3578999998776 77 99999999999876553
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.78 E-value=0.18 Score=62.97 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH---HHHHHHHHHHHH-HHHHHHHH
Q 037169 144 MAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQA---LEKQAAKLKDVA-SLYERDKR 219 (860)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~ 219 (860)
+.+.++++++++++......||.++...+.....+...++.+..........+... +++++..++.-. +.++.+..
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~ 397 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELE 397 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34567777777777777778888888777666665555555544444333333322 233443333332 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 220 LWIIAMNELERKILIWKEEHSQLAREAHE 248 (860)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~e~~~l~~e~~~ 248 (860)
+.+..+..|+.++..+.....+|..+...
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444433
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.13 E-value=0.55 Score=61.37 Aligned_cols=46 Identities=28% Similarity=0.428 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 638 SQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 638 ~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
.++.........++.++.++.......++.+..+...+.+++..+.
T Consensus 814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 859 (1163)
T COG1196 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333444445555554444444555555544544444443
No 39
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.89 E-value=0.094 Score=51.70 Aligned_cols=130 Identities=25% Similarity=0.272 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 037169 589 MMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEIC 668 (860)
Q Consensus 589 ~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~ 668 (860)
..+...+.+.+...+.+..|+.++...............+.+..+..|+.++...+..+.+++.+|..+..........+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777766655443333334455666778889999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 037169 669 SNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELE 727 (860)
Q Consensus 669 ~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe 727 (860)
...+.++.+|+.... .+...+...|.....+.+.+.....+|+.++.+|.
T Consensus 90 q~~q~kv~eLE~~~~---------~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 90 QKKQEKVSELESLNS---------SLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888876543 35566667777777777777777777777776653
No 40
>PRK11637 AmiB activator; Provisional
Probab=96.46 E-value=0.64 Score=54.04 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 037169 585 QKVKMMLEKT 594 (860)
Q Consensus 585 ~~lk~~l~~~ 594 (860)
..++..++..
T Consensus 50 ~~l~~qi~~~ 59 (428)
T PRK11637 50 KSIQQDIAAK 59 (428)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=2.4 Score=53.81 Aligned_cols=56 Identities=16% Similarity=0.405 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-hhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 628 NQQEKINELESQLESK------TQLCRQLEKQLLQVS-EGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 628 ~~~~k~~ele~~l~~~------~~~~~~le~~l~~l~-~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
.+++.+.+++.+++.. .+.+.+|+..+..+. +..+...+.++.+.+++..++..+.
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~ 924 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIA 924 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555444433 133444444444442 2222333444455555555554444
No 42
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.33 E-value=0.39 Score=47.64 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169 600 SKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE 679 (860)
Q Consensus 600 ~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele 679 (860)
...+....++..+..++......++.+..++.++..++.+++.....+......+......... .+.++.++..||
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LE 86 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHH
Confidence 3334444555555555555555556666666666666666665555555554444333222211 124555555555
Q ss_pred HHHH
Q 037169 680 NKLK 683 (860)
Q Consensus 680 ~~l~ 683 (860)
..|.
T Consensus 87 eele 90 (143)
T PF12718_consen 87 EELE 90 (143)
T ss_pred HHHH
Confidence 5544
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.27 E-value=0.16 Score=62.36 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH---------------HHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 037169 629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKE---------------EICSNVQRKVKELENKLKEHDQSENVTA 693 (860)
Q Consensus 629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~e---------------e~~~~lq~~~~ele~~l~~~~q~~~~~~ 693 (860)
.+..+..||.++.+.+.....+|++|..-+...+..+ +-.+.+.++.++||.+++.+..+-. .
T Consensus 486 DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk--~ 563 (697)
T PF09726_consen 486 DKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELK--Q 563 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 3444566777777777777777777765543322221 2334466677777777766544321 2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 694 LHHKVRELENRLKARTQE---FEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 694 le~ki~~lE~kl~~~~~~---~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.+.++..+|.+.+++... .+.+.+.|-..+..+++|-...|.-|
T Consensus 564 kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 564 KEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555433332 22334444444444444444444444
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.04 E-value=0.81 Score=54.24 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=8.9
Q ss_pred eeEEEeecCCccc
Q 037169 470 SKLWLVDLAGSER 482 (860)
Q Consensus 470 skL~lVDLAGSEr 482 (860)
=.++.||=.|.=+
T Consensus 90 YqfcYv~~~g~V~ 102 (546)
T PF07888_consen 90 YQFCYVDQKGEVR 102 (546)
T ss_pred EEEEEECCCccEE
Confidence 3567788877655
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.97 E-value=0.42 Score=58.78 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhh-hhh----hHHHHHHHHHHHHHHHH---HHHHHHHH
Q 037169 643 KTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHD-QSE----NVTALHHKVRELENRLK---ARTQEFEV 714 (860)
Q Consensus 643 ~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~-q~~----~~~~le~ki~~lE~kl~---~~~~~~e~ 714 (860)
......+||.++.+++..++.+++.+..+..++.++...-++-. ..+ +...++.|-.-||+-|. ..+.++=.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33455667777777777777777777777766655543211100 000 11234555555555542 33334444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh--hccccCCCCCCC
Q 037169 715 HSGMLQQKIAELEEKLRKKEEYATA--YCFREMPVTTPY 751 (860)
Q Consensus 715 ~~~~lq~qi~eLe~kl~~Qeeq~~~--~~~~~~~~~~p~ 751 (860)
....-+.+++.++..++.+++.+.. ..|.++-+.-|.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4566677888888888888877732 334444444444
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.94 E-value=1.4 Score=47.28 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037169 647 CRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAEL 726 (860)
Q Consensus 647 ~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eL 726 (860)
...|..++..+.++..+++..+..+..+...++..+. .+..++..++..+....+.++.....+.++...+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~---------~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE---------DLKERLERLEKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333 2333344444444444444444444444444444
Q ss_pred HHHHHHHH
Q 037169 727 EEKLRKKE 734 (860)
Q Consensus 727 e~kl~~Qe 734 (860)
..+..+..
T Consensus 162 ~~~~~~L~ 169 (239)
T COG1579 162 SSKREELK 169 (239)
T ss_pred HHHHHHHH
Confidence 33333333
No 47
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.73 E-value=0.88 Score=48.78 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037169 694 LHHKVRELENRLKARTQEFEVHSGMLQQKIAELEE 728 (860)
Q Consensus 694 le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~ 728 (860)
++.++..+..++..+...+......+...+..+.+
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555444444444444444444444
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.61 E-value=0.81 Score=59.25 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 037169 328 FAYGQTGTGKTFTM 341 (860)
Q Consensus 328 faYGqTGSGKTyTM 341 (860)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999999876
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.59 E-value=0.48 Score=54.17 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 037169 648 RQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN-----VTALHHKVRELENRLKARTQEFEVHSGMLQQK 722 (860)
Q Consensus 648 ~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~-----~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~q 722 (860)
.+++.....+....+..+..+.+++.+++.+.+++..+.+... +..+..++++++...++.....+.....|++|
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444555566666666666666554432111 12345555555555555444444333444444
Q ss_pred HHHHHHHHHHHHHH-hhhhccc
Q 037169 723 IAELEEKLRKKEEY-ATAYCFR 743 (860)
Q Consensus 723 i~eLe~kl~~Qeeq-~~~~~~~ 743 (860)
+.+|---+.-|++. .++.+|.
T Consensus 444 lrDlmf~le~qqklk~dt~eIq 465 (493)
T KOG0804|consen 444 LRDLMFFLEAQQKLKSDTDEIQ 465 (493)
T ss_pred HHhHheehhhhhhhhcchhhhc
Confidence 44433333333333 3444444
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.53 E-value=0.98 Score=48.41 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 037169 716 SGMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 716 ~~~lq~qi~eLe~kl~~Qe 734 (860)
...|+.++..|+.+|...+
T Consensus 199 v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 199 VKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555333
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.48 E-value=0.91 Score=58.83 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.3
Q ss_pred HHHHHH
Q 037169 422 KEVWDV 427 (860)
Q Consensus 422 ~e~~~l 427 (860)
.++..+
T Consensus 120 ~~~~~~ 125 (1164)
T TIGR02169 120 SEIHDF 125 (1164)
T ss_pred HHHHHH
Confidence 333333
No 52
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.41 E-value=0.79 Score=54.69 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=81.1
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhhcccccccccccCh--HHHHHHHHHHHH--HHHHhcChHHHHHHHHHHHHHHHHHhhc
Q 037169 546 QISPSEQDLGETLSSLNFASRVRGVELSPARKQIDI--SKLQKVKMMLEK--TKQEVGSKDDVIQKLEENFQNLEVKAKG 621 (860)
Q Consensus 546 ~VSP~~~~~~ETl~TL~fA~r~r~I~~~p~~~~~~~--~~~~~lk~~l~~--~k~e~~~~~~~i~~le~~~~~l~~~~~~ 621 (860)
.|||....|..-+++|.- +|.. ..+..|. .++..++..+.. .+.++..+++.|..|..+-..|-.+.-.
T Consensus 399 ~~ssl~~e~~QRva~lEk-----Kvqa--~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~ 471 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEK-----KVQA--LTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLA 471 (961)
T ss_pred cccchHHHHHHHHHHHHH-----HHHH--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 467877777777777642 1111 1111111 123333444321 2335666777888777766666555555
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 037169 622 NVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE 684 (860)
Q Consensus 622 ~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~ 684 (860)
+...++.+..|+++.+..++..-+.+..|+.+...+...+.++++.-..+++.++.+...+..
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR 534 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888887777777777777777777777777777777766666666666555443
No 53
>PRK09039 hypothetical protein; Validated
Probab=95.40 E-value=1.1 Score=50.67 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=10.3
Q ss_pred EEecCCCCCCHHhHHHHHHH
Q 037169 544 FLQISPSEQDLGETLSSLNF 563 (860)
Q Consensus 544 I~~VSP~~~~~~ETl~TL~f 563 (860)
=++|+|. |-+.++||=+
T Consensus 12 ~~~~wpg---~vd~~~~ll~ 28 (343)
T PRK09039 12 GVDYWPG---FVDALSTLLL 28 (343)
T ss_pred CCCCCch---HHHHHHHHHH
Confidence 3567885 5556666644
No 54
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.36 E-value=1.2 Score=59.79 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHh
Q 037169 693 ALHHKVRELENRLKARTQEFEVHSG---MLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 693 ~le~ki~~lE~kl~~~~~~~e~~~~---~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.+++++++++.++.++.++++.++. .+..+..+|..++..+.+++
T Consensus 1094 ~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1094 QLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777776666666655432 23444555555555444444
No 55
>PRK11637 AmiB activator; Provisional
Probab=95.36 E-value=1.3 Score=51.41 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 037169 722 KIAELEEKLRKKEEYA 737 (860)
Q Consensus 722 qi~eLe~kl~~Qeeq~ 737 (860)
.+..|+.++.+++..+
T Consensus 220 ~l~~L~~~~~~~~~~l 235 (428)
T PRK11637 220 TLTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.17 E-value=3.9 Score=45.29 Aligned_cols=68 Identities=26% Similarity=0.367 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 668 ~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
....+.++.++...+..+..+ +..++.+...|+..+..+...+..+...++..+..++.++...+.++
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~e--l~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAE--LESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhh--hhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 333444444444444433222 33466666677777777777777777777777777777777666554
No 57
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.91 E-value=2.1 Score=51.34 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 692 TALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 692 ~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
..|++++...|.+.+++.+..-.-..=|-+||.-|++-|..+---|
T Consensus 615 ~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~taw 660 (961)
T KOG4673|consen 615 EDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAW 660 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHH
Confidence 3455555555555555555444444455666666666666444333
No 58
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.88 E-value=1.9 Score=55.84 Aligned_cols=10 Identities=50% Similarity=0.843 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 037169 723 IAELEEKLRK 732 (860)
Q Consensus 723 i~eLe~kl~~ 732 (860)
+.+++.++..
T Consensus 896 ~~~~~~~~~~ 905 (1179)
T TIGR02168 896 LEELSEELRE 905 (1179)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=2.1 Score=51.86 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=20.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhh
Q 037169 656 QVSEGMKGKEEICSNVQRKVKELENKLKEHDQS 688 (860)
Q Consensus 656 ~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~ 688 (860)
+|......++.+|..+.+++.+++++.....++
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~e 564 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNE 564 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556677777777777777666554444
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.77 E-value=1.9 Score=42.81 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=11.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 658 SEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 658 ~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
..++...++.+......+.+...+|.
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444
No 61
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.43 E-value=3.8 Score=48.83 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 633 INELESQLESKTQLCRQLEKQLLQVSEGM 661 (860)
Q Consensus 633 ~~ele~~l~~~~~~~~~le~~l~~l~~~~ 661 (860)
...|..+.+...+.+.+|+..+..+..+.
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444554444444433
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.43 E-value=4 Score=48.88 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=13.4
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
+..+-+|++|||||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45566899999999755
No 63
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.32 E-value=2.4 Score=57.20 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037169 668 CSNVQRKVKELENKLKEH 685 (860)
Q Consensus 668 ~~~lq~~~~ele~~l~~~ 685 (860)
...++..+++++..+.++
T Consensus 1092 ~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.02 E-value=5.7 Score=41.68 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 037169 703 NRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYAT 738 (860)
Q Consensus 703 ~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~ 738 (860)
.-+.+..+......-.|+.++..+.+.+...+-|+.
T Consensus 132 ~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 132 SAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555666677777777766666663
No 65
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.93 E-value=3.6 Score=53.94 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=6.4
Q ss_pred cEEEEEEEee
Q 037169 97 PIVNGICIKN 106 (860)
Q Consensus 97 p~InaIEI~k 106 (860)
-+|||-.+..
T Consensus 112 Y~INg~~~~~ 121 (1163)
T COG1196 112 YYINGEKVRL 121 (1163)
T ss_pred EEECCcEeeH
Confidence 5777766643
No 66
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.91 E-value=0.073 Score=64.89 Aligned_cols=68 Identities=43% Similarity=0.714 Sum_probs=51.6
Q ss_pred eccchhhHHHhhCCccEEEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccccc
Q 037169 309 FADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDL 388 (860)
Q Consensus 309 f~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DL 388 (860)
|.+..+.+..++++++.. +|++|+|.+.....|+.-+....++......... ..++.|++.+.|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (670)
T KOG0239|consen 44 FSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS-------NVVEAYNERLRDL 108 (670)
T ss_pred CCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc-------hhHHHHHHHHhhh
Confidence 555677788888888876 8999999999988888888877777654433221 1678899999999
Q ss_pred cCC
Q 037169 389 LDT 391 (860)
Q Consensus 389 L~~ 391 (860)
+..
T Consensus 109 ~~~ 111 (670)
T KOG0239|consen 109 LSE 111 (670)
T ss_pred ccc
Confidence 864
No 67
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.78 E-value=7.2 Score=38.05 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 704 RLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 704 kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.-...+..++.+...+..++.+|..+.+-.-.|+
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444555444444333333
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.64 E-value=5.2 Score=47.86 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 037169 718 MLQQKIAELEEKLR 731 (860)
Q Consensus 718 ~lq~qi~eLe~kl~ 731 (860)
.+..++.++..+..
T Consensus 383 ~l~~~l~~~~~~~~ 396 (562)
T PHA02562 383 KLQDELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 69
>PRK09039 hypothetical protein; Validated
Probab=93.52 E-value=6.3 Score=44.74 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 627 KNQQEKINELESQLESKTQLCRQLEKQL 654 (860)
Q Consensus 627 ~~~~~k~~ele~~l~~~~~~~~~le~~l 654 (860)
..++..+.+++.++....+...+++..+
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~ 104 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALL 104 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444444444433
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.46 E-value=11 Score=39.15 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 037169 717 GMLQQKIAELEEKL 730 (860)
Q Consensus 717 ~~lq~qi~eLe~kl 730 (860)
..++..+..|++.+
T Consensus 175 eeLR~e~s~LEeql 188 (193)
T PF14662_consen 175 EELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.44 E-value=6 Score=44.32 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037169 700 ELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 700 ~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qe 734 (860)
+++..+.+.+...+..+..=..++..|.++++-.+
T Consensus 250 e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444554444333
No 72
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.42 E-value=0.069 Score=62.28 Aligned_cols=74 Identities=24% Similarity=0.234 Sum_probs=49.9
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCccccccCC---CCCCCch----hhHHHHHHHHHHHhcCCceEEEEEEEEEEeccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEGT---QQNRGVN----YRTLELLFKIAEERKETFTYSISVSALEVYNEQ 384 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~---~~~~GIi----pRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~ 384 (860)
+..||..+-.|...- .--|.|||||||||-.- -.-|-++ --...+||...++.-+...+..+|||+.-|.-.
T Consensus 21 I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPE 99 (663)
T COG0556 21 IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPE 99 (663)
T ss_pred HHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhCcCcceEEEeeeccccCcc
Confidence 456777766665543 35799999999999531 1112221 124567888888766666788899999999665
Q ss_pred cc
Q 037169 385 IR 386 (860)
Q Consensus 385 i~ 386 (860)
-|
T Consensus 100 AY 101 (663)
T COG0556 100 AY 101 (663)
T ss_pred cc
Confidence 54
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.31 E-value=4.5 Score=45.43 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.7
Q ss_pred hcccccC
Q 037169 530 LLQDSLG 536 (860)
Q Consensus 530 LLqdsLg 536 (860)
|+++++.
T Consensus 105 Lf~EY~~ 111 (325)
T PF08317_consen 105 LFREYYT 111 (325)
T ss_pred HHHHHHc
Confidence 5555544
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=93.14 E-value=6.5 Score=49.91 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=4.8
Q ss_pred CCCcceEEEEEE
Q 037169 66 GANKPLQVVDVR 77 (860)
Q Consensus 66 G~~~a~~~~~~~ 77 (860)
|...+.+.+.|.
T Consensus 64 ~~~~~~v~~~f~ 75 (880)
T PRK02224 64 GAEEAEIELWFE 75 (880)
T ss_pred CCCcEEEEEEEE
Confidence 333333334444
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=2.3 Score=51.60 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 037169 200 LEKQAAKLKDVASLY 214 (860)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (860)
+..|+=+|.++..|=
T Consensus 50 VLaqIWALsDldkDG 64 (1118)
T KOG1029|consen 50 VLAQIWALSDLDKDG 64 (1118)
T ss_pred HHHHHHHhhhcCccc
Confidence 344444444444443
No 76
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.01 E-value=15 Score=39.47 Aligned_cols=126 Identities=15% Similarity=0.248 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 037169 607 KLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHD 686 (860)
Q Consensus 607 ~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~ 686 (860)
.|+.++..++............+.-....+...++. ...+.-++..++...+.+...+|++++..+.+||+.-..+.
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED---QRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 345555555555444433333332222222222221 22222334444555555566788888888888775443332
Q ss_pred hhh-----hHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037169 687 QSE-----NVTALHHKV-------RELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEY 736 (860)
Q Consensus 687 q~~-----~~~~le~ki-------~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq 736 (860)
... ..+.+++++ ..||..+-+....++ .++.|...-.+|.++|.-+.+|
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESELdEke~lle-svqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLE-SVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 211 112223222 234444444333333 3566666667777777765555
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.00 E-value=5.6 Score=44.73 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 037169 506 LGDVISSL 513 (860)
Q Consensus 506 Lg~vI~aL 513 (860)
|.+|+.|+
T Consensus 56 l~~~~~A~ 63 (325)
T PF08317_consen 56 LEDYVVAG 63 (325)
T ss_pred HHHHHHHh
Confidence 33444443
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.00 E-value=3.7 Score=47.25 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=6.8
Q ss_pred CceEEEEEEEEE
Q 037169 448 RSHCMLCISVKA 459 (860)
Q Consensus 448 RSH~If~i~v~~ 459 (860)
-.|++|...|.-
T Consensus 147 ~Chll~V~~ve~ 158 (493)
T KOG0804|consen 147 VCHLLYVDRVEV 158 (493)
T ss_pred ceeEEEEEEEEE
Confidence 456666555543
No 79
>PRK03918 chromosome segregation protein; Provisional
Probab=92.99 E-value=9 Score=48.53 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=13.3
Q ss_pred CccEEEEeeccCCCCccccc
Q 037169 322 GYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM 341 (860)
|+|+ -+|++|||||..|
T Consensus 24 g~~~---i~G~nG~GKStil 40 (880)
T PRK03918 24 GINL---IIGQNGSGKSSIL 40 (880)
T ss_pred CcEE---EEcCCCCCHHHHH
Confidence 5544 7899999999764
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.72 E-value=6.3 Score=49.98 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=15.6
Q ss_pred CccEEEEeeccCCCCcccccc
Q 037169 322 GYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM~ 342 (860)
|-+.. |.-|+.||||+-.|.
T Consensus 61 g~~vN-fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILT 80 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHH
Confidence 44444 889999999998874
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.64 E-value=5.2 Score=47.69 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037169 583 KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSE 659 (860)
Q Consensus 583 ~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~ 659 (860)
++.+++.+++.++..+.........-++++......+...+.........+..++..+..+.+...++..+|..+..
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44555555555555544433333333333333333333334444444555555666655555555555555554443
No 82
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.60 E-value=15 Score=38.41 Aligned_cols=67 Identities=28% Similarity=0.453 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037169 668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRL-------KARTQEFEVHSGMLQQKIAELEEKLRKKEEY 736 (860)
Q Consensus 668 ~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl-------~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq 736 (860)
.+.++.++..++.++.+.... +..|+++++-...-. ..-..+.......++.++..|..++++.+++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~k--i~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKK--IQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666543332 233444443222211 1111222334455666666666666666554
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.39 E-value=7 Score=47.47 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 037169 715 HSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 715 ~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
+.+.++++++++..+++..++.+
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~ 470 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELY 470 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888887666644
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.32 E-value=18 Score=41.98 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=4.1
Q ss_pred EEEecCCC
Q 037169 543 MFLQISPS 550 (860)
Q Consensus 543 mI~~VSP~ 550 (860)
++++++|+
T Consensus 25 ~~~~~s~s 32 (420)
T COG4942 25 AVLAAAFS 32 (420)
T ss_pred cccccchh
Confidence 44555554
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.27 E-value=16 Score=37.97 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037169 717 GMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
..+..-..+|..+..+.++|+
T Consensus 168 eEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 168 EEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666665
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.21 E-value=27 Score=40.51 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q 037169 584 LQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKA 619 (860)
Q Consensus 584 ~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~ 619 (860)
+..++..++.+..++....+...+|+.++.+++..+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i 75 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444444444444443
No 87
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.20 E-value=16 Score=44.40 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKEL 154 (860)
Q Consensus 141 ~~~~~~~~~~~~~~ 154 (860)
.+.|++++..-.+|
T Consensus 28 ~~~i~~Le~~k~~l 41 (569)
T PRK04778 28 YKRIDELEERKQEL 41 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666555
No 88
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.13 E-value=9.3 Score=47.47 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=4.7
Q ss_pred ccCcccccc
Q 037169 808 WRGSENNIL 816 (860)
Q Consensus 808 ~~~~~~~~~ 816 (860)
..|+++.-+
T Consensus 611 rrGGdhDsv 619 (1243)
T KOG0971|consen 611 RRGGDHDSV 619 (1243)
T ss_pred cCCCCccee
Confidence 355555544
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.10 E-value=8.1 Score=43.28 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 037169 718 MLQQKIAELEEKLRKKEEYATAYCFRE 744 (860)
Q Consensus 718 ~lq~qi~eLe~kl~~Qeeq~~~~~~~~ 744 (860)
.++.+|.+++..+. +-+.|+..++..
T Consensus 250 e~~~~I~~ae~~~~-~~r~~t~~Ei~~ 275 (312)
T smart00787 250 ELNTEIAEAEKKLE-QCRGFTFKEIEK 275 (312)
T ss_pred HHHHHHHHHHHHHH-hcCCCCHHHHHH
Confidence 34444444444332 334444444443
No 90
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.99 E-value=0.084 Score=57.99 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=27.1
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
-|++..+++--++.|+.-|+||||||.||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 47888899999999999999999999998
No 91
>PRK03918 chromosome segregation protein; Provisional
Probab=91.82 E-value=15 Score=46.46 Aligned_cols=6 Identities=17% Similarity=0.219 Sum_probs=2.2
Q ss_pred HHHHHH
Q 037169 423 EVWDVL 428 (860)
Q Consensus 423 e~~~ll 428 (860)
++..++
T Consensus 112 ~~~~~i 117 (880)
T PRK03918 112 SVREWV 117 (880)
T ss_pred HHHHHH
Confidence 333333
No 92
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.47 E-value=54 Score=42.39 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=12.6
Q ss_pred cChHHHHHHHHHHHHHHHHhcCh
Q 037169 579 IDISKLQKVKMMLEKTKQEVGSK 601 (860)
Q Consensus 579 ~~~~~~~~lk~~l~~~k~e~~~~ 601 (860)
.+...+..++..++.++.++...
T Consensus 855 ~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 855 VDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666665443
No 93
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.47 E-value=0.36 Score=54.82 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45888999999999876
No 94
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.46 E-value=0.17 Score=59.15 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=27.6
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
....+..++..-++.|+.-||||||||.||+
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 4456788899999999999999999999996
No 95
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.40 E-value=13 Score=49.87 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
+++.-+|++|||||.+|-
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 466678999999999884
No 96
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.40 E-value=11 Score=45.73 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 037169 583 KLQKVKMMLEKTKQEVGS 600 (860)
Q Consensus 583 ~~~~lk~~l~~~k~e~~~ 600 (860)
++..++.++..+..++..
T Consensus 329 el~~l~~~l~~l~~~i~~ 346 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEE 346 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 97
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.38 E-value=14 Score=47.14 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=12.6
Q ss_pred HhHhhhhHHHHHHHHHHhcc
Q 037169 496 AQNINRSLSALGDVISSLAT 515 (860)
Q Consensus 496 ~~~INkSL~aLg~vI~aL~~ 515 (860)
+..|+.++..|.+|=.-|..
T Consensus 1517 ~~~I~e~v~sL~nVd~IL~~ 1536 (1758)
T KOG0994|consen 1517 TGEIQERVASLPNVDAILSR 1536 (1758)
T ss_pred HHHHHHHHHhcccHHHHHHh
Confidence 45677777777766555543
No 98
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.37 E-value=21 Score=37.39 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037169 695 HHKVRELENRLKARTQEFEVH 715 (860)
Q Consensus 695 e~ki~~lE~kl~~~~~~~e~~ 715 (860)
..++..|+.+++-....+...
T Consensus 138 ~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 138 EKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 334444444444444444433
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.31 E-value=14 Score=49.54 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=6.1
Q ss_pred cchhhccccc
Q 037169 526 KLTHLLQDSL 535 (860)
Q Consensus 526 KLT~LLqdsL 535 (860)
.+|+.|+++|
T Consensus 212 ~i~~fl~~yl 221 (1486)
T PRK04863 212 AITRSLRDYL 221 (1486)
T ss_pred hHHHHHHHHc
Confidence 5566666665
No 100
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.30 E-value=21 Score=37.43 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 037169 583 KLQKVKMMLEKTKQEVG 599 (860)
Q Consensus 583 ~~~~lk~~l~~~k~e~~ 599 (860)
-|..|+.++..++....
T Consensus 28 lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 101
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.28 E-value=16 Score=45.52 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.5
Q ss_pred CCCCCchhhHHH
Q 037169 345 QQNRGVNYRTLE 356 (860)
Q Consensus 345 ~~~~GIipRal~ 356 (860)
+.+.||+-|.-+
T Consensus 61 d~ncG~FVr~sq 72 (1243)
T KOG0971|consen 61 DENCGVFVRSSQ 72 (1243)
T ss_pred CCCcceEeehhh
Confidence 445566555544
No 102
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.14 E-value=21 Score=37.47 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 037169 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQ 630 (860)
Q Consensus 582 ~~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~ 630 (860)
.+|--|+.++.....++..+...|-.|..++.+....+...+.....+.
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~ 58 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ 58 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566677777777777777776777777777666666655544444333
No 103
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.97 E-value=12 Score=44.53 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 037169 642 SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHD 686 (860)
Q Consensus 642 ~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~ 686 (860)
......+.+++.+.++......+++.++.++.+..+|.+.+..+.
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444455566777777777778888888888888887776553
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.95 E-value=9.7 Score=42.14 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 630 QEKINELESQLESKTQLCRQLEKQLLQVS 658 (860)
Q Consensus 630 ~~k~~ele~~l~~~~~~~~~le~~l~~l~ 658 (860)
+..+.++..++.........++.++..+.
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 44444455555544444444444444433
No 105
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.85 E-value=0.46 Score=53.43 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 146 KCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGL 186 (860)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 186 (860)
.|++....-......-.+|.+.....+.++..++..+...+
T Consensus 12 ~y~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~ 52 (329)
T PRK06835 12 EYEKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKL 52 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 36666666666666666677777777777777766665544
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.79 E-value=24 Score=40.11 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhcc
Q 037169 502 SLSALGDVISSLAT 515 (860)
Q Consensus 502 SL~aLg~vI~aL~~ 515 (860)
+...||.||..+.+
T Consensus 8 ~vlvLgGVIA~~gD 21 (499)
T COG4372 8 FVLVLGGVIAYAGD 21 (499)
T ss_pred HHHHHHhHHHHHhh
Confidence 56789999998875
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.32 E-value=1 Score=51.86 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=14.9
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345888999999999865
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.27 E-value=25 Score=38.41 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 037169 584 LQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKT 644 (860)
Q Consensus 584 ~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~ 644 (860)
+..+......+..++..++..+..+..+..++..+.....+..+.++.+|.++++.+..+.
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555555555555555555554433
No 109
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.24 E-value=39 Score=38.61 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 037169 715 HSGMLQQKIAELEEKLRKKEEYATAYCF 742 (860)
Q Consensus 715 ~~~~lq~qi~eLe~kl~~Qeeq~~~~~~ 742 (860)
....++.++..++.++...+.++....+
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~~~i 274 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQRLII 274 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence 4455666777777777766666644333
No 110
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.90 E-value=32 Score=42.15 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 037169 604 VIQKLEENFQNLE 616 (860)
Q Consensus 604 ~i~~le~~~~~l~ 616 (860)
.+..|+..+..|+
T Consensus 51 ~V~eLE~sL~eLk 63 (617)
T PF15070_consen 51 RVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 111
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.84 E-value=16 Score=36.22 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=8.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 037169 710 QEFEVHSGMLQQKIAELEEKL 730 (860)
Q Consensus 710 ~~~e~~~~~lq~qi~eLe~kl 730 (860)
..++.+...-..++.-|+++|
T Consensus 129 tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444433
No 112
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.78 E-value=32 Score=43.63 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=15.1
Q ss_pred eeEEEeCChHHHHHHHhhhhhcCcccc
Q 037169 413 LTEAKIENIKEVWDVLHIGSNARAVGS 439 (860)
Q Consensus 413 l~e~~V~s~~e~~~ll~~g~~~R~~~s 439 (860)
|-.+.|.+..-.-.+|+.|.-.|++.-
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRvTi 574 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRVTI 574 (1174)
T ss_pred ceeEEeechHHHHHHhhcccccceeEE
Confidence 344555555556666666666655443
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.70 E-value=2.1 Score=44.41 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL 220 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (860)
+.+++.+-+..+++..++-.+..+..++...+......|..+..++..+..+...++..++.....+..+...+..+.
T Consensus 80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~-- 157 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ-- 157 (194)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 455555555555555555555555555555555555666666666655555555555555555555555555553333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 221 WIIAMNELERKILIWKEEHSQLARE 245 (860)
Q Consensus 221 ~~~~~~~~~~~~~~~~~e~~~l~~e 245 (860)
-....++.++..++.|...|...
T Consensus 158 --l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 158 --LQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666543
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.62 E-value=43 Score=38.25 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 037169 717 GMLQQKIAELEEKLRKKEEYATA 739 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qeeq~~~ 739 (860)
+...+++...++.++++++++..
T Consensus 241 ~q~~q~iaar~e~I~~re~~lq~ 263 (499)
T COG4372 241 SQKAQQIAARAEQIRERERQLQR 263 (499)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445566667777788888844
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.52 E-value=18 Score=43.95 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 626 CKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 626 ~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
+..++..+.++..+++...+....+...+..+........+.+..++.++..+...+.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~ 435 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE 435 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544444444444445555544444333
No 116
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.42 E-value=40 Score=42.80 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 037169 722 KIAELEEKLRKKEEYATAY 740 (860)
Q Consensus 722 qi~eLe~kl~~Qeeq~~~~ 740 (860)
-+.+++..-.++++.+|+-
T Consensus 569 ~~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 569 NNNDLELIHNELKKYIDAL 587 (1195)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3333333334444444443
No 117
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.41 E-value=28 Score=46.05 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 164 ECYEAWMSLTAANDQLEKVRMGLDNKCFQ----NLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEH 239 (860)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (860)
.+.+....+.++..+|..+...+...... ...+.........++..+...++.....+...+..+...+...+.+.
T Consensus 250 ~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L 329 (1201)
T PF12128_consen 250 KLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSEL 329 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555444444332221 11222333333344444555555555555555555555555555444
Q ss_pred HHHH
Q 037169 240 SQLA 243 (860)
Q Consensus 240 ~~l~ 243 (860)
..+.
T Consensus 330 ~~i~ 333 (1201)
T PF12128_consen 330 DEIE 333 (1201)
T ss_pred HHHH
Confidence 4443
No 118
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.30 E-value=22 Score=46.95 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 037169 726 LEEKLRKKEEYA 737 (860)
Q Consensus 726 Le~kl~~Qeeq~ 737 (860)
+++++...++.+
T Consensus 776 l~~~i~~L~~~l 787 (1201)
T PF12128_consen 776 LKQEIEQLEKEL 787 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 333343344333
No 119
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.30 E-value=10 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 037169 717 GMLQQKIAELEEKLRKKEEYAT 738 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qeeq~~ 738 (860)
..++..+.++..++..|+.++.
T Consensus 649 ~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 649 QDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777776654
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.28 E-value=25 Score=34.98 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
.+.....+..+.+...+.+..++.++..+...+...+..+..+..+...+.+.+.
T Consensus 36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555555555544444444443
No 121
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.26 E-value=6.3 Score=47.04 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 037169 716 SGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 716 ~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
+..|++++.+.+.+..++.+++
T Consensus 240 ~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 240 MAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred hhhHHHHHhhhhhHHHHHHHHH
Confidence 4567777777776666666666
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.90 E-value=43 Score=41.97 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhhh
Q 037169 147 CEKRIKELKIQCQLK 161 (860)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (860)
+++.+.++..-....
T Consensus 84 ~r~~i~~l~r~w~~l 98 (980)
T KOG0980|consen 84 YKKWITQLGRMWGHL 98 (980)
T ss_pred HHHHHHHHHHHhccc
Confidence 344444444333333
No 123
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.79 E-value=17 Score=43.49 Aligned_cols=15 Identities=47% Similarity=0.787 Sum_probs=9.6
Q ss_pred CCcchh---hcccccCCC
Q 037169 524 NSKLTH---LLQDSLGGD 538 (860)
Q Consensus 524 dSKLT~---LLqdsLgGn 538 (860)
|++|+. +|++.+|+.
T Consensus 65 N~~L~~di~~lr~~~~~~ 82 (546)
T KOG0977|consen 65 NRKLEHDINLLRGVVGRE 82 (546)
T ss_pred HHHHHHHHHHHHhhccCC
Confidence 456663 667777765
No 124
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.65 E-value=13 Score=49.43 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 037169 715 HSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 715 ~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
....|+.++.++.+++..++..+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444
No 125
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.45 E-value=26 Score=46.76 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037169 694 LHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKL 730 (860)
Q Consensus 694 le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl 730 (860)
+...+..++..........+...+.++.++..+...+
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1311)
T TIGR00606 914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333334444444433333
No 126
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.30 E-value=1.2 Score=51.47 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.2
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
...|+-||++|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999876
No 127
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.29 E-value=46 Score=39.64 Aligned_cols=94 Identities=16% Similarity=0.309 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037169 646 LCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAE 725 (860)
Q Consensus 646 ~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~e 725 (860)
.+.+|-.+++....+.......|..++.++...++.......+ +......+..++..+.-++.-||.....+-+.+-.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee--L~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEE--LKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444555555555566677888887777776655443222 34466778888888998999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc
Q 037169 726 LEEKLRKKEEYATAYC 741 (860)
Q Consensus 726 Le~kl~~Qeeq~~~~~ 741 (860)
+.++|..|+++++.-.
T Consensus 499 mNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 499 MNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987654
No 128
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.25 E-value=18 Score=35.86 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 145 AKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKR 219 (860)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (860)
++-....+.|..++..+..+...+...++.+..+++.+.+++.....+...+...+......++..+.++...+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555566666666655554444444444444444444444444444433
No 129
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.06 E-value=24 Score=44.59 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169 636 LESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 636 le~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~ 685 (860)
.+.++......+..|+.++..+.......+......+.+++.+..++...
T Consensus 834 ~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 834 LKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444555555555555555555555433
No 130
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.83 E-value=29 Score=43.57 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 164 ECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKR 219 (860)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (860)
+...+...| .++.++.++..++.........+.. ++.....+..+...++....
T Consensus 75 ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~ 128 (775)
T PF10174_consen 75 EIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQR 128 (775)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 333333334 3344444444444333333333333 44444455555555544443
No 131
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.58 E-value=54 Score=40.66 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 202 KQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHE 248 (860)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~ 248 (860)
.|+..|..--..++..++.+++.+..+|..+++.+.|+..+..++|.
T Consensus 106 sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~ 152 (1265)
T KOG0976|consen 106 SQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK 152 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444556666777777777777777777666655555443
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=0.66 Score=52.97 Aligned_cols=54 Identities=30% Similarity=0.501 Sum_probs=35.1
Q ss_pred chhhHHHhhCCccEE-EEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEE
Q 037169 312 ASPLVTSVLDGYNVC-IFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEV 380 (860)
Q Consensus 312 v~plV~~~l~G~N~~-IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEI 380 (860)
+..++..++.|.-.. ++.||.||||||.|+ ..+++.+........ .++|-+.+.
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 334455666655444 999999999999986 566666665544322 455655554
No 133
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.98 E-value=61 Score=40.72 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.3
Q ss_pred HHHHHH
Q 037169 586 KVKMML 591 (860)
Q Consensus 586 ~lk~~l 591 (860)
+|+.++
T Consensus 390 qLr~el 395 (980)
T KOG0980|consen 390 QLRNEL 395 (980)
T ss_pred HHHHHH
Confidence 333333
No 134
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.60 E-value=34 Score=34.88 Aligned_cols=11 Identities=36% Similarity=0.438 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 037169 718 MLQQKIAELEE 728 (860)
Q Consensus 718 ~lq~qi~eLe~ 728 (860)
.|+.+...++.
T Consensus 163 ~l~rk~~~l~~ 173 (177)
T PF13870_consen 163 ELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 135
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.57 E-value=63 Score=40.25 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037169 694 LHHKVRELENRLKARTQEFE 713 (860)
Q Consensus 694 le~ki~~lE~kl~~~~~~~e 713 (860)
|..+++++..-.......++
T Consensus 140 l~~qlee~~rLk~iae~qle 159 (717)
T PF09730_consen 140 LNSQLEEAARLKEIAEKQLE 159 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333333
No 136
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.25 E-value=76 Score=37.20 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 037169 556 ETLSSLNFA 564 (860)
Q Consensus 556 ETl~TL~fA 564 (860)
|+|..|+-.
T Consensus 317 EvL~kLk~t 325 (527)
T PF15066_consen 317 EVLQKLKHT 325 (527)
T ss_pred HHHHHHHhh
Confidence 444444333
No 137
>PLN02939 transferase, transferring glycosyl groups
Probab=86.04 E-value=37 Score=43.49 Aligned_cols=69 Identities=32% Similarity=0.457 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037169 666 EICSNVQRKVKELENKLKEHD----QSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 666 e~~~~lq~~~~ele~~l~~~~----q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qe 734 (860)
+...+++.++..||.-|.+.. ..+.++.++++++.+|.+++....++....+..++.+.+.+..+....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 324 DQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred ccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888877766543 345666788999999999988888888777777888888777777544
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.83 E-value=50 Score=34.75 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 037169 726 LEEKLRKKE 734 (860)
Q Consensus 726 Le~kl~~Qe 734 (860)
++++..+.+
T Consensus 170 ~e~ki~~~e 178 (221)
T PF04012_consen 170 MEEKIEEME 178 (221)
T ss_pred HHHHHHHHH
Confidence 333333333
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.83 E-value=59 Score=36.11 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 037169 671 VQRKVKELENKL 682 (860)
Q Consensus 671 lq~~~~ele~~l 682 (860)
+...+.+|+..+
T Consensus 112 ler~i~~Le~~~ 123 (294)
T COG1340 112 LEREIERLEKKQ 123 (294)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 140
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.80 E-value=43 Score=41.43 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=4.9
Q ss_pred eeEEEeecC
Q 037169 470 SKLWLVDLA 478 (860)
Q Consensus 470 skL~lVDLA 478 (860)
|-..++||-
T Consensus 24 sp~qvidln 32 (1265)
T KOG0976|consen 24 SPFQVIDLN 32 (1265)
T ss_pred CCceeeecc
Confidence 445566663
No 141
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.48 E-value=42 Score=34.42 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 037169 719 LQQKIAE 725 (860)
Q Consensus 719 lq~qi~e 725 (860)
+.+++.+
T Consensus 177 l~~~~~~ 183 (191)
T PF04156_consen 177 LEEKIQE 183 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 142
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.44 E-value=80 Score=38.84 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q 037169 586 KVKMMLEKTKQEV 598 (860)
Q Consensus 586 ~lk~~l~~~k~e~ 598 (860)
.|...++.++.++
T Consensus 84 ~Lq~E~~~L~kEl 96 (617)
T PF15070_consen 84 QLQAEAEHLRKEL 96 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 143
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.99 E-value=27 Score=39.05 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169 631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE 679 (860)
Q Consensus 631 ~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele 679 (860)
.+...||..+...+++..+++-+|+.+...-.++++....+.+++.+.-
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3445566666666666667777776666555556666655655555443
No 144
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.90 E-value=14 Score=41.47 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHH
Q 037169 585 QKVKMMLEKTKQEVGSKDDVIQKL 608 (860)
Q Consensus 585 ~~lk~~l~~~k~e~~~~~~~i~~l 608 (860)
..++..++.+..+.+.+...+..+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444333
No 145
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.83 E-value=77 Score=39.92 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=15.3
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169 654 LLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 654 l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~ 685 (860)
+..+.+.+.-.+..+..++.++..|+..+.+.
T Consensus 380 i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 380 IEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444555555555555555443
No 146
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=84.83 E-value=51 Score=34.00 Aligned_cols=99 Identities=30% Similarity=0.365 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 037169 633 INELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEF 712 (860)
Q Consensus 633 ~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~ 712 (860)
..++..++......+.-||++|+..+..+...+..-....++-..++..- ...+. .+..-..+++.||...-.++.
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~-~~~~~-~~~~klekLe~LE~E~~rLt~-- 134 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRER-QQDQS-ELQAKLEKLEKLEKEYLRLTA-- 134 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-ccchh-hHHHHHHHHHHHHHHHHHHHH--
Confidence 55777888888888888888888777666555543333333323332211 01111 111222344444444333322
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 713 EVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 713 e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
....-+.+|.+||++|.+.+.|.
T Consensus 135 --~Q~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 135 --TQSLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344668888888888666554
No 147
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.79 E-value=8.1 Score=34.10 Aligned_cols=64 Identities=30% Similarity=0.335 Sum_probs=41.3
Q ss_pred HhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037169 597 EVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEG 660 (860)
Q Consensus 597 e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~ 660 (860)
.+..+++.|..|.++-..|...-......++.+..++.+++..+......+...+..+..+...
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677787777777777665555556666777777777776666666665555555554443
No 148
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.77 E-value=84 Score=36.89 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037169 654 LLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN--------VTALHHKVRELENRLKARTQEFEVHSGMLQQKIAE 725 (860)
Q Consensus 654 l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~--------~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~e 725 (860)
+.++......+|+.++.|+.+..+|.+.+..+.-+.. .+.|.+.+.++.-+..++........-..|..++.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444556666666666666665554432211 11233334444444555555444444445666666
Q ss_pred HHHHHHHH
Q 037169 726 LEEKLRKK 733 (860)
Q Consensus 726 Le~kl~~Q 733 (860)
|++.++.-
T Consensus 412 lek~~~~~ 419 (622)
T COG5185 412 LEKTLRQY 419 (622)
T ss_pred HHHHHHHH
Confidence 77666643
No 149
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.76 E-value=41 Score=42.60 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037169 717 GMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
..++..+..+++.+..+++++
T Consensus 477 ~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 477 KKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.73 E-value=32 Score=42.92 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=10.6
Q ss_pred ecCeeEEEeCChHHHHHHHh
Q 037169 410 VPGLTEAKIENIKEVWDVLH 429 (860)
Q Consensus 410 v~gl~e~~V~s~~e~~~ll~ 429 (860)
-.|+..+.+.=...+..++.
T Consensus 386 ~~GvH~V~L~wl~~L~~fl~ 405 (717)
T PF10168_consen 386 NAGVHSVTLPWLSALQEFLE 405 (717)
T ss_pred cCccEEEEeccHHHHHHHhc
Confidence 45666666654444444443
No 151
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.58 E-value=55 Score=34.19 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 037169 716 SGMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 716 ~~~lq~qi~eLe~kl~~Qe 734 (860)
.+.|+..+.+++.++....
T Consensus 167 VakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 167 VAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHcccHHHHHHhhHHHH
Confidence 3444555555555554433
No 152
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.44 E-value=1.1e+02 Score=37.31 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 037169 718 MLQQKIAELEEKLRKKEEYATAYCFREMP 746 (860)
Q Consensus 718 ~lq~qi~eLe~kl~~Qeeq~~~~~~~~~~ 746 (860)
..++++..++.++..-++.+...-+|.+|
T Consensus 411 ~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 411 EAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 45667777888888888888888888776
No 153
>PRK06893 DNA replication initiation factor; Validated
Probab=84.42 E-value=0.56 Score=49.76 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=20.9
Q ss_pred HHhhCCccEEEEeeccCCCCcccccc
Q 037169 317 TSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 317 ~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
..+-.++|..++-||++|+||||.+.
T Consensus 32 ~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 32 KNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred HHhhccCCCeEEEECCCCCCHHHHHH
Confidence 33345788889999999999999774
No 154
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.16 E-value=33 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 037169 698 VRELENRLKARTQEFE 713 (860)
Q Consensus 698 i~~lE~kl~~~~~~~e 713 (860)
+++|+.++...+.+|.
T Consensus 98 veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 98 VEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 155
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.16 E-value=40 Score=32.66 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 037169 583 KLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLE 616 (860)
Q Consensus 583 ~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~ 616 (860)
-+.++...|..+..++......+..++.+...+.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444444444443333
No 156
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.07 E-value=77 Score=35.46 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 668 CSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATA 739 (860)
Q Consensus 668 ~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~~ 739 (860)
...|+.++..++...... ....+.|....-.+|+.++. +.+.....|..++..|+.+-+..+..++.
T Consensus 137 V~kL~k~i~~Le~e~~~~--q~~le~Lr~EKVdlEn~LE~---EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAK--QEELERLRREKVDLENTLEQ---EQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555554433221 11122333333345554432 33334466777777777777777777744
No 157
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.80 E-value=45 Score=32.51 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 037169 587 VKMMLEKTKQE 597 (860)
Q Consensus 587 lk~~l~~~k~e 597 (860)
+...+..+...
T Consensus 8 l~~e~~~~~~~ 18 (132)
T PF07926_consen 8 LQSELQRLKEQ 18 (132)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 158
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.67 E-value=36 Score=40.43 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 145 AKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRLWIIA 224 (860)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (860)
.-|.++|++|..+.+.+..+..-.+..-+.+...|+....++..+.+......+.+..--++|.+.+.-|+..-..+.+-
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEH 495 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45788888887777777754444444444444444444444433333334445555555555666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037169 225 MNELERKILIWKEEHSQL 242 (860)
Q Consensus 225 ~~~~~~~~~~~~~e~~~l 242 (860)
+..+.+++...+.|+..|
T Consensus 496 LasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555444
No 159
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=83.64 E-value=20 Score=32.19 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037169 674 KVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIA 724 (860)
Q Consensus 674 ~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~ 724 (860)
.-.+++.++..+.++ +..+++++-+||....++++.||.+...|..++.
T Consensus 26 ~~~e~e~ki~~Qi~E--m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQE--MQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544443 4457888889999999999988877777666553
No 160
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.50 E-value=43 Score=42.50 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhc
Q 037169 587 VKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKG 621 (860)
Q Consensus 587 lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~ 621 (860)
++..+..+++++..+-+....+++++++++..+..
T Consensus 182 le~kir~LrqElEEK~enll~lr~eLddleae~~k 216 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISK 216 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555555555544433
No 161
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.15 E-value=72 Score=40.95 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=16.5
Q ss_pred HHHHHHHHhcc----CCCccc---CCCCcchhhcc
Q 037169 505 ALGDVISSLAT----KSGHIP---YRNSKLTHLLQ 532 (860)
Q Consensus 505 aLg~vI~aL~~----~~~hVP---YRdSKLT~LLq 532 (860)
+-.+||.-|.. ..+++| -|..+++.=|+
T Consensus 541 ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr 575 (1141)
T KOG0018|consen 541 TARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLR 575 (1141)
T ss_pred HHHHHHHHHHHhccCCccccchhhhhcCccccccc
Confidence 44567777764 245666 35566666665
No 162
>PRK01156 chromosome segregation protein; Provisional
Probab=83.06 E-value=78 Score=40.49 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.3
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5567999999999764
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.06 E-value=64 Score=36.08 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 037169 631 EKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKL 682 (860)
Q Consensus 631 ~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l 682 (860)
.++..|...+..+.......+.++.++.......+..|..+-.+..++...|
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455555555555555555555555554444444444444444444443333
No 164
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.04 E-value=79 Score=35.38 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169 639 QLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 639 ~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~ 685 (860)
++......+..|...|....+......+.+..|..++..++.+++..
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443434445555555555555555543
No 165
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.55 E-value=81 Score=35.96 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037169 720 QQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 720 q~qi~eLe~kl~~Qeeq~ 737 (860)
..++.+++.++...+.++
T Consensus 245 ~~~l~~~~~~l~~~~~~l 262 (423)
T TIGR01843 245 LEELTEAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 166
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.45 E-value=1.1e+02 Score=35.98 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=14.7
Q ss_pred HHHHhhcccccccccccChHHHHHHHHHHHHH
Q 037169 563 FASRVRGVELSPARKQIDISKLQKVKMMLEKT 594 (860)
Q Consensus 563 fA~r~r~I~~~p~~~~~~~~~~~~lk~~l~~~ 594 (860)
+..+++.......+.++-.+-|.+|+.-++.+
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeL 374 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEEL 374 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555554443
No 167
>PRK11281 hypothetical protein; Provisional
Probab=82.16 E-value=51 Score=43.14 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
++.++.+++.++...++.+.+++.++..+...-........+.++++.++++.+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555554444444444444555555666655554
No 168
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.08 E-value=0.57 Score=43.27 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.8
Q ss_pred EEeeccCCCCccccccC
Q 037169 327 IFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 327 IfaYGqTGSGKTyTM~G 343 (860)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57799999999999864
No 169
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.86 E-value=1.3e+02 Score=41.08 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 037169 167 EAWMSLTAANDQLEKVRMGLDNKCFQNL 194 (860)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 194 (860)
.+..+|..++.+++++.+++.++...+.
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ 755 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKL 755 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666665554433
No 170
>PRK10436 hypothetical protein; Provisional
Probab=81.85 E-value=0.65 Score=54.59 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.2
Q ss_pred hHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
.+..++..-++.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4566777788999999999999999985
No 171
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=81.82 E-value=1.1 Score=53.20 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=24.8
Q ss_pred hhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
..+..++..-++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35666778888899999999999999995
No 172
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.67 E-value=68 Score=42.03 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=12.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 714 VHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 714 ~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
...+.++.++..|++.+-+++.+-
T Consensus 215 ~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 215 KRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555655555554443
No 173
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.55 E-value=55 Score=39.26 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 629 QQEKINELESQLESKTQLCRQLEKQL 654 (860)
Q Consensus 629 ~~~k~~ele~~l~~~~~~~~~le~~l 654 (860)
++..+.+.+++++..++...+|.+++
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 174
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.54 E-value=0.65 Score=56.02 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.4
Q ss_pred hHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 5667777888999999999999999984
No 175
>PF13245 AAA_19: Part of AAA domain
Probab=81.47 E-value=0.76 Score=40.51 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=18.2
Q ss_pred HHHhhCCccEEEEeeccCCCCcccccc
Q 037169 316 VTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 316 V~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
|..++. -+..+..-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 455556 33445559999999999873
No 176
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.24 E-value=23 Score=39.79 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037169 717 GMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qe 734 (860)
..+..++.-...++...+
T Consensus 116 ~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445544455554444
No 177
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.07 E-value=18 Score=38.26 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 037169 145 AKCEKRIKELKIQCQLKT 162 (860)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ 162 (860)
.++++++.+++.++....
T Consensus 96 p~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 96 PDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555554444433
No 178
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=80.95 E-value=1.4e+02 Score=40.93 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=6.6
Q ss_pred cCCCCCCHHhHHHHH
Q 037169 547 ISPSEQDLGETLSSL 561 (860)
Q Consensus 547 VSP~~~~~~ETl~TL 561 (860)
.+|.+..++.++.-|
T Consensus 627 ~t~~~~~~e~~l~qL 641 (1822)
T KOG4674|consen 627 QTEAPRAKEKRLRQL 641 (1822)
T ss_pred ccccchhHHHHHHHH
Confidence 344444344444444
No 179
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.89 E-value=0.79 Score=45.37 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.6
Q ss_pred hHHHhhCC-ccEEEEeeccCCCCccccccC
Q 037169 315 LVTSVLDG-YNVCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 315 lV~~~l~G-~N~~IfaYGqTGSGKTyTM~G 343 (860)
++..+-.+ .+.-+...|+||||||++|.+
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33333333 355566678999999999963
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.53 E-value=0.95 Score=42.26 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=18.0
Q ss_pred HHhhCCccEEEEeeccCCCCccccc
Q 037169 317 TSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 317 ~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+.......++-+|++|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334556888999999999865
No 181
>PRK06620 hypothetical protein; Validated
Probab=80.49 E-value=0.95 Score=47.73 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.8
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
-.+|-||++||||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999884
No 182
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.41 E-value=56 Score=42.10 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 037169 718 MLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 718 ~lq~qi~eLe~kl~~Qeeq~ 737 (860)
..+.++..|+.++++..+.+
T Consensus 1728 ~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1728 DKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 34555666666666554443
No 183
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.36 E-value=85 Score=34.44 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=14.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 655 LQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 655 ~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
..+........+.|+.+...-..+...+.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 33333444445566666555555554443
No 184
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.35 E-value=1.2e+02 Score=39.26 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 037169 633 INELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE 684 (860)
Q Consensus 633 ~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~ 684 (860)
.+++..+++++...+..+++++..+.+..-...+++..+..+...++.+|..
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555554444555555555555555555543
No 185
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.28 E-value=84 Score=39.24 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=6.2
Q ss_pred HHHHHhhccc
Q 037169 562 NFASRVRGVE 571 (860)
Q Consensus 562 ~fA~r~r~I~ 571 (860)
.|++|+..+.
T Consensus 583 ~f~srL~~ls 592 (970)
T KOG0946|consen 583 NFISRLQRLS 592 (970)
T ss_pred HHHHHHHHhh
Confidence 5677766553
No 186
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.27 E-value=80 Score=33.04 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037169 668 CSNVQRKVKELENKLKEHDQ-----SENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAEL 726 (860)
Q Consensus 668 ~~~lq~~~~ele~~l~~~~q-----~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eL 726 (860)
.+.+..+++.+..+|++... ..++..|++.+..+|.++...+..+......|.+.+.+|
T Consensus 139 ~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 139 EEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554332 223445777777777777777777766556665555544
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.15 E-value=32 Score=41.41 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=14.2
Q ss_pred CCchhhHHHHHHHHHHHhcCCce
Q 037169 348 RGVNYRTLELLFKIAEERKETFT 370 (860)
Q Consensus 348 ~GIipRal~~LF~~~~~~~~~~~ 370 (860)
.|.|.+....|=..+....-+++
T Consensus 163 h~av~~~~reIee~L~~agldyD 185 (652)
T COG2433 163 HGAVKRVVREIEEKLDEAGLDYD 185 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCCce
Confidence 36777777777777765443333
No 188
>PRK12704 phosphodiesterase; Provisional
Probab=80.12 E-value=1.4e+02 Score=35.88 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 037169 722 KIAELEEKLR 731 (860)
Q Consensus 722 qi~eLe~kl~ 731 (860)
.+.+.+++.+
T Consensus 174 ~~~~~~~~~~ 183 (520)
T PRK12704 174 LIKEIEEEAK 183 (520)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 189
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=80.06 E-value=1.2 Score=48.19 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCCCCccceeEEEE-ec-cchhhHHHhhCCc---cEEEEeeccCCCCccccc
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGILTVDV-FA-DASPLVTSVLDGY---NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~dV-f~-~v~plV~~~l~G~---N~~IfaYGqTGSGKTyTM 341 (860)
+++||-|-.-|.... ...++.........+ .+. +. ...+.+..++... .+.|+..|+||||||.+|
T Consensus 74 ~~~R~~i~~~p~~~~-----~~~~iR~~~~~~~sl----e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 74 DGIRVRITTPPVSGG-----PTIVIRKFSSKPFSL----EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TSEEEEEEETTTSTS-----EEEEEEEETSS--CH----CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEEcCCcCC-----cccceeccccccccH----hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 788888887776544 223333111111111 111 11 1234444445444 677788899999999998
No 190
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=80.01 E-value=0.64 Score=49.16 Aligned_cols=16 Identities=44% Similarity=0.837 Sum_probs=14.2
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.+|-||++|+||||-|
T Consensus 36 ~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred ceEEECCCCCCHHHHH
Confidence 4788999999999965
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.92 E-value=0.62 Score=43.94 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=13.0
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
+.+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999976
No 192
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.79 E-value=1e+02 Score=33.82 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCc
Q 037169 711 EFEVHSGMLQQKIAELEEKLRKKEEYATAYCFREMPVTTPYN 752 (860)
Q Consensus 711 ~~e~~~~~lq~qi~eLe~kl~~Qeeq~~~~~~~~~~~~~p~~ 752 (860)
+++.+...|++.+..|......-++.+=.+-+++.|.=||++
T Consensus 204 el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCTPDm 245 (258)
T PF15397_consen 204 ELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPKCTPDM 245 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCCCCc
Confidence 344444555555555555555556666445566666666665
No 193
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.69 E-value=1.7e+02 Score=36.54 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 604 VIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 604 ~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
.|..|+.++..++..+.........+.....++....+........|..++.+++.+-.-...-++++.++.-.|.+.+.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444444444443333322333333333333333333333344444444444433333333334444444444444444
Q ss_pred Hhhhhh-hHHHHHHHHHHHHHHHHHH
Q 037169 684 EHDQSE-NVTALHHKVRELENRLKAR 708 (860)
Q Consensus 684 ~~~q~~-~~~~le~ki~~lE~kl~~~ 708 (860)
.+.+++ .-+.+...++.++..+..+
T Consensus 115 ~Lk~sQvefE~~Khei~rl~Ee~~~l 140 (717)
T PF09730_consen 115 VLKQSQVEFEGLKHEIKRLEEEIELL 140 (717)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 1233445555555444333
No 194
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=79.68 E-value=0.95 Score=51.13 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred hhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
|.+..++.--.+.|+-.|+||||||+||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 45555665456789999999999999984
No 195
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.37 E-value=1.8e+02 Score=36.43 Aligned_cols=8 Identities=0% Similarity=0.331 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 037169 422 KEVWDVLH 429 (860)
Q Consensus 422 ~e~~~ll~ 429 (860)
.|++..|+
T Consensus 250 adLLkCiQ 257 (861)
T PF15254_consen 250 ADLLKCIQ 257 (861)
T ss_pred HHHHHHHH
Confidence 33333333
No 196
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.23 E-value=1e+02 Score=33.52 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 037169 584 LQKVKMMLEKTKQE 597 (860)
Q Consensus 584 ~~~lk~~l~~~k~e 597 (860)
+..++..+..++.+
T Consensus 22 L~~~~~~l~~~~~~ 35 (302)
T PF10186_consen 22 LLELRSELQQLKEE 35 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.22 E-value=1.8e+02 Score=36.47 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=11.6
Q ss_pred CcceeEEEecCCCCCCHHhHHHHH
Q 037169 538 DSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 538 nskT~mI~~VSP~~~~~~ETl~TL 561 (860)
.+..+-|-.-++++.-...-.+++
T Consensus 153 ~s~ii~Is~~~~dP~~Aa~iaN~l 176 (754)
T TIGR01005 153 KTRIIAIEFRSEDPKLAAAIPDAI 176 (754)
T ss_pred ccEEEEEEEecCCHHHHHHHHHHH
Confidence 344444455555555444444443
No 198
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.17 E-value=85 Score=34.01 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 693 ALHHKVRELENRLKARTQE---FEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 693 ~le~ki~~lE~kl~~~~~~---~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.|..++.+++..+..+... -+.+...|+.++..-...+.+..+.+
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666565554433332 23345566666666666555544444
No 199
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.17 E-value=0.81 Score=47.47 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 037169 324 NVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~ 342 (860)
++.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678999999999999983
No 200
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=79.03 E-value=1.1 Score=44.07 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=21.8
Q ss_pred hhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
.++..+..|.| ++..|+||||||+.+.
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 35666777877 7789999999999875
No 201
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=79.00 E-value=2 Score=48.25 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCCCCcccee-EEEEec-cchhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGIL-TVDVFA-DASPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-~~dVf~-~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
+..||.+.+.|.. .+....+.-.......+... ....|. ....++..++.+. ..|+-.|.||||||++|
T Consensus 95 ~G~Rv~~~~~p~~-----~g~~~~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 95 DGSRFAGQLPPVV-----PAPTFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred CCEEEEEEcCCcC-----CCcEEEEECCCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4579998888864 23333343222111111100 011121 1345667677654 45566699999999876
No 202
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=78.89 E-value=1.4e+02 Score=39.16 Aligned_cols=16 Identities=6% Similarity=-0.054 Sum_probs=7.4
Q ss_pred HHhhhhhccCCCeEEE
Q 037169 257 NKMVSTIQVLGNIRVF 272 (860)
Q Consensus 257 ~~~~~~~~~~gnIrV~ 272 (860)
-.||-+.|+--+.=.+
T Consensus 138 v~LhyAFQD~~~LYlV 153 (1317)
T KOG0612|consen 138 VQLHYAFQDERYLYLV 153 (1317)
T ss_pred HHHHHHhcCccceEEE
Confidence 4445455544444333
No 203
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=78.58 E-value=26 Score=31.48 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 587 VKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVS 658 (860)
Q Consensus 587 lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~ 658 (860)
+.++++.++.+.......+.....+-.+++.++....+....++.++-+|+..-. +....+|.+|..+.
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr 70 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455566666655444444444444555555555555555555666666654432 34445555554443
No 204
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.52 E-value=1.8e+02 Score=37.28 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=16.3
Q ss_pred eccCCCCccccccCCCCCCCchhhHHHHHHHHH
Q 037169 330 YGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362 (860)
Q Consensus 330 YGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~ 362 (860)
.|..||||+--.. -|.-.+.+.|..+
T Consensus 31 VGrNGSGKSNFF~-------AIrFVLSDey~hL 56 (1200)
T KOG0964|consen 31 VGRNGSGKSNFFH-------AIRFVLSDEYSHL 56 (1200)
T ss_pred ecCCCCCchhhHH-------Hhhhhcccchhhc
Confidence 4999999986542 2334455556555
No 205
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=78.43 E-value=1.8 Score=47.17 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=23.2
Q ss_pred hhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
..+..++..-.+.|+-.|+||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44566666667788999999999999984
No 206
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.12 E-value=1.2e+02 Score=33.93 Aligned_cols=59 Identities=31% Similarity=0.500 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 037169 669 SNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRK 732 (860)
Q Consensus 669 ~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~ 732 (860)
..++.+-.++++.|.. .+..-+..|.+++..++.+.......++ .+...-.+||..|..
T Consensus 116 ~qLr~EK~~lE~~Le~-EqE~~V~kL~k~i~~Le~e~~~~q~~le----~Lr~EKVdlEn~LE~ 174 (310)
T PF09755_consen 116 NQLRQEKVELENQLEQ-EQEYLVNKLQKKIERLEKEKSAKQEELE----RLRREKVDLENTLEQ 174 (310)
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHhHHHHHHH
Confidence 3344444455555542 2222345677777777665544333333 455555556666553
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.99 E-value=0.9 Score=41.81 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.5
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999884
No 208
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.97 E-value=49 Score=37.91 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=13.5
Q ss_pred CccccccCCCCCCCchhhHHHHHHHHHHH
Q 037169 336 GKTFTMEGTQQNRGVNYRTLELLFKIAEE 364 (860)
Q Consensus 336 GKTyTM~G~~~~~GIipRal~~LF~~~~~ 364 (860)
|+.|...+.-++|. -++..|+..+..
T Consensus 57 g~~f~~p~e~DDPn---~~~~~Il~~lr~ 82 (359)
T PF10498_consen 57 GRKFEQPQEYDDPN---ATISNILDELRK 82 (359)
T ss_pred CCCCCCCcccCCHH---HHHHHHHHHHHc
Confidence 45555544444433 355666666654
No 209
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=77.52 E-value=1.2 Score=51.02 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=20.9
Q ss_pred hhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
++++.++. .++.|+..|+||||||+||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34454443 56678889999999999983
No 210
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.36 E-value=1.5e+02 Score=35.59 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 037169 722 KIAELEEKLR 731 (860)
Q Consensus 722 qi~eLe~kl~ 731 (860)
.+...+++.+
T Consensus 168 ~~~~~~~~~~ 177 (514)
T TIGR03319 168 LIKEIEEEAK 177 (514)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 211
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=77.28 E-value=5.1 Score=43.17 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=34.5
Q ss_pred eCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEEEeeccCCceeEeeEEEeecCCcccc
Q 037169 418 IENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVKAKNLINGECTKSKLWLVDLAGSERL 483 (860)
Q Consensus 418 V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~ 483 (860)
+.+.+++...+..+... ..+. ...-|.-++.|.|...+. -.|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 45788888888765432 1111 123456678888877653 36999999998643
No 212
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.21 E-value=1.7e+02 Score=35.26 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDN 188 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 188 (860)
...+.+....+.+++.++..+..+-..+...|......++.++..|..
T Consensus 33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888877777777777777776666666654
No 213
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=77.16 E-value=1.3 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=20.3
Q ss_pred HhhCCccEEEEeeccCCCCcccccc
Q 037169 318 SVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 318 ~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
.++.--.+.|+..|+||||||.||.
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHHH
Confidence 3444457899999999999999984
No 214
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.05 E-value=97 Score=35.56 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 037169 585 QKVKMMLEKTKQ 596 (860)
Q Consensus 585 ~~lk~~l~~~k~ 596 (860)
+.||.-++.+++
T Consensus 216 kDWR~hleqm~~ 227 (359)
T PF10498_consen 216 KDWRSHLEQMKQ 227 (359)
T ss_pred chHHHHHHHHHH
Confidence 344444444443
No 215
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.92 E-value=65 Score=40.51 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=14.1
Q ss_pred hHHhhhhhccCCCeEEEEEeCCC
Q 037169 256 LNKMVSTIQVLGNIRVFCRCRPL 278 (860)
Q Consensus 256 ~~~~~~~~~~~gnIrV~~RvRP~ 278 (860)
+-+|.++|..+|+-.+--|.|..
T Consensus 216 ~a~mk~ev~~~~~~~~~~r~r~~ 238 (769)
T PF05911_consen 216 LAQMKNEVESLGRDSGENRRRRS 238 (769)
T ss_pred HHHhHHHHHHhccccccccCCCC
Confidence 45566666666766666655543
No 216
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.91 E-value=53 Score=35.48 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 146 KCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEK-------VRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDK 218 (860)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (860)
.++.++..++.++.-+..+...+..+++....+++. ....|..-..+......++.+.+.+|+...-++++-|
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 455555555555544444444444444443333322 2222222223334444555556667777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 219 RLWIIAMNELERKILIWKEEHSQLA 243 (860)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~e~~~l~ 243 (860)
+..--.+.+++.++.+..+...-|.
T Consensus 129 Rati~sleDfeqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 129 RATIYSLEDFEQRLNQAIERNAFLE 153 (333)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666544444333
No 217
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.82 E-value=1e+02 Score=36.44 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.4
Q ss_pred EEEEEEEE
Q 037169 452 MLCISVKA 459 (860)
Q Consensus 452 If~i~v~~ 459 (860)
++.|.+..
T Consensus 123 vi~Is~~~ 130 (498)
T TIGR03007 123 LFTISYED 130 (498)
T ss_pred eEEEEeeC
Confidence 44444433
No 218
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=76.37 E-value=1 Score=47.32 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 446799999999998
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.27 E-value=36 Score=41.06 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=12.8
Q ss_pred ccCCCcEEEEEEEeecCCC
Q 037169 92 GACGSPIVNGICIKNATNV 110 (860)
Q Consensus 92 ~~~g~p~InaIEI~k~~~~ 110 (860)
...|-|+|=|--|.++|.+
T Consensus 285 ~~lG~PvvVAtDVtp~P~~ 303 (652)
T COG2433 285 SELGKPVVVATDVTPAPET 303 (652)
T ss_pred HHcCCceEEEccCCCChHH
Confidence 3346688888777776654
No 220
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.13 E-value=1.8e+02 Score=34.72 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037169 692 TALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEE 728 (860)
Q Consensus 692 ~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~ 728 (860)
..++.++..++.++.+........+..|..+|..|.+
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777778777777776666667777777766544
No 221
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.08 E-value=1.1e+02 Score=32.39 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 037169 584 LQKVKMMLEKTKQEVGSKDDVIQKLEENFQNL 615 (860)
Q Consensus 584 ~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l 615 (860)
...|+..++.+......+...+..++..+..+
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~ 56 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKTIAQM 56 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444443
No 222
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=75.83 E-value=1.2e+02 Score=37.98 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=13.7
Q ss_pred hHhhhhHHHHHHHHHHhcc
Q 037169 497 QNINRSLSALGDVISSLAT 515 (860)
Q Consensus 497 ~~INkSL~aLg~vI~aL~~ 515 (860)
..|=+|=..+..||..|.-
T Consensus 78 ieiL~Sr~v~~~VV~~L~L 96 (754)
T TIGR01005 78 VEILSSNEILKQVVDKLGL 96 (754)
T ss_pred HHHHccHHHHHHHHHHcCC
Confidence 3456677888888888763
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.68 E-value=83 Score=34.50 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037169 631 EKINELESQLESKTQLCRQL 650 (860)
Q Consensus 631 ~k~~ele~~l~~~~~~~~~l 650 (860)
.||.+|+.+++.+.+...+-
T Consensus 18 qKIqelE~QldkLkKE~qQr 37 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQR 37 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444433
No 224
>PF12846 AAA_10: AAA-like domain
Probab=75.67 E-value=1.1 Score=48.17 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.2
Q ss_pred cEEEEeeccCCCCcccccc
Q 037169 324 NVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~ 342 (860)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999884
No 225
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.36 E-value=1.9e+02 Score=39.00 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=13.5
Q ss_pred EEEeeccCCCCcccccc
Q 037169 326 CIFAYGQTGTGKTFTME 342 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~ 342 (860)
.++--|++|||||.+|-
T Consensus 26 ~~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVLE 42 (1353)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 34556999999999884
No 226
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.31 E-value=1.9 Score=46.89 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=26.6
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
.-|++..+.--..+.|+..|+|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 3467788887888999999999999999983
No 227
>PRK00106 hypothetical protein; Provisional
Probab=75.09 E-value=2e+02 Score=34.84 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 037169 721 QKIAELEEKLR 731 (860)
Q Consensus 721 ~qi~eLe~kl~ 731 (860)
..+.+.+++.+
T Consensus 188 ~~i~~~e~~a~ 198 (535)
T PRK00106 188 TRIREAEREVK 198 (535)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.92 E-value=1.4e+02 Score=38.54 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=10.9
Q ss_pred eccCCCCccccc
Q 037169 330 YGQTGTGKTFTM 341 (860)
Q Consensus 330 YGqTGSGKTyTM 341 (860)
.||.||||+-.|
T Consensus 31 IGPNGSGKSNlM 42 (1141)
T KOG0018|consen 31 IGPNGSGKSNLM 42 (1141)
T ss_pred eCCCCCchHHHH
Confidence 499999999888
No 229
>PRK10698 phage shock protein PspA; Provisional
Probab=74.77 E-value=1.2e+02 Score=32.27 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037169 723 IAELEEKLRKKEEYATA 739 (860)
Q Consensus 723 i~eLe~kl~~Qeeq~~~ 739 (860)
....|+++.+.+-+.++
T Consensus 168 f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 168 FESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33344444444444444
No 230
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.72 E-value=1.5e+02 Score=35.21 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc--cccCCCCCCCc
Q 037169 696 HKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYC--FREMPVTTPYN 752 (860)
Q Consensus 696 ~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~~~~--~~~~~~~~p~~ 752 (860)
....-.+.++++.+..|..........|++|+.+|.+-+.-++... ++..+...|-+
T Consensus 378 e~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s~ia~~~~e~pqq 436 (613)
T KOG0992|consen 378 EYSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNASEIAQYEDELPQQ 436 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCccchhh
Confidence 3444556778888888888888889999999999998888875554 44444455554
No 231
>PTZ00464 SNF-7-like protein; Provisional
Probab=74.69 E-value=1.2e+02 Score=32.17 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 037169 724 AELEEKLRKKEEYA 737 (860)
Q Consensus 724 ~eLe~kl~~Qeeq~ 737 (860)
.+|+++|.+.+..+
T Consensus 160 dELe~ELe~Le~e~ 173 (211)
T PTZ00464 160 DEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 232
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.64 E-value=1.3e+02 Score=32.57 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 037169 722 KIAELEEKLRKKEEYA 737 (860)
Q Consensus 722 qi~eLe~kl~~Qeeq~ 737 (860)
.+..+...+...+.++
T Consensus 134 ~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 134 RLSQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 233
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=74.61 E-value=1.2e+02 Score=31.94 Aligned_cols=68 Identities=24% Similarity=0.370 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037169 667 ICSNVQRKVKELENKL--KEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 667 ~~~~lq~~~~ele~~l--~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qe 734 (860)
....++..+..++..| ........+..+..++-.++.+.++++...+.+.-..+.+|.+||.+|..+.
T Consensus 83 ~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n 152 (196)
T PF15272_consen 83 QSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRN 152 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666 3333344556677777777777777777777777788899999999988443
No 234
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.47 E-value=93 Score=33.48 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 037169 646 LCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKE 684 (860)
Q Consensus 646 ~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~ 684 (860)
.+.+++++...|......-.+++.++++-+..||..++.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333334444455555555555543
No 235
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.35 E-value=9.5 Score=43.35 Aligned_cols=42 Identities=33% Similarity=0.597 Sum_probs=29.9
Q ss_pred EEEeeccCCCCcccccc--------------CCC---CCCCchhhHHHHHHHHHHHhcC
Q 037169 326 CIFAYGQTGTGKTFTME--------------GTQ---QNRGVNYRTLELLFKIAEERKE 367 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~--------------G~~---~~~GIipRal~~LF~~~~~~~~ 367 (860)
-|+-||+.|+|||-.-- |+. .--|==+|.+++||....+...
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 48899999999985431 221 1124448999999999887665
No 236
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=74.32 E-value=59 Score=30.54 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=52.4
Q ss_pred ceEE-EeeCCCCcEEEEEEeeecccCCCCCcceEEEEEECC--EEEeeccchhhccCCCcceEEEEEEEeeCCCceEEEE
Q 037169 13 FSYR-IGNLSPGDYLVDLHFAEIVNANGPKGMRVFDVFMQE--EKVLLEIDIYSIVGANKPLQVVDVRVSVGMDEVLLIR 89 (860)
Q Consensus 13 ~sY~-f~~v~~G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing--~~vl~~fDI~~~~G~~~a~~~~~~~V~~~~~g~L~I~ 89 (860)
+.|. ++.-..|.|.|++.++- ..+.+.++|+|+| -.++..+++.. .|.-..+......|... .|.=+|.
T Consensus 34 ~~~~~Vd~~~~g~y~~~~~~a~------~~~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~-~G~h~i~ 105 (125)
T PF03422_consen 34 IEYNNVDVPEAGTYTLTIRYAN------GGGGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLP-AGKHTIY 105 (125)
T ss_dssp EEEEEEEESSSEEEEEEEEEEE------SSSSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEE-SEEEEEE
T ss_pred EEEEEEeeCCCceEEEEEEEEC------CCCCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeC-CCeeEEE
Confidence 5577 64446789999988876 1222789999999 45578888854 34434444444555543 3655555
Q ss_pred EEccCCC---cEEEEEEEee
Q 037169 90 FDGACGS---PIVNGICIKN 106 (860)
Q Consensus 90 F~~~~g~---p~InaIEI~k 106 (860)
|....+. +-|..|.+.|
T Consensus 106 l~~~~~~~~~~niD~~~f~k 125 (125)
T PF03422_consen 106 LVFNGGDGWAFNIDYFQFTK 125 (125)
T ss_dssp EEESSSSSB-EEEEEEEEEE
T ss_pred EEEECCCCceEEeEEEEEEC
Confidence 5444433 6666666643
No 237
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.48 E-value=2e+02 Score=34.06 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=14.9
Q ss_pred CCcceeEEEecCCCCCCHHhHHHHH
Q 037169 537 GDSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 537 GnskT~mI~~VSP~~~~~~ETl~TL 561 (860)
|++..+=|-.-+|++.-.....+++
T Consensus 119 ~~s~vi~Is~~~~dP~~Aa~i~n~l 143 (498)
T TIGR03007 119 GRDNLFTISYEDKDPELAKDVVQTL 143 (498)
T ss_pred CCCCeEEEEeeCCCHHHHHHHHHHH
Confidence 4455555555677766666666654
No 238
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.45 E-value=83 Score=35.25 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCc
Q 037169 717 GMLQQKIAELEEKLRKKEEYATAYCFREMPVTTPYN 752 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qeeq~~~~~~~~~~~~~p~~ 752 (860)
..++.++.+|.++|++..+-+..+-+.=.+. +|+.
T Consensus 150 d~L~~e~~~Lre~L~~rdeli~khGlVlv~~-~~ng 184 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELIEKHGLVLVPD-ATNG 184 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC-CCCC
Confidence 4677788888888887777777777763433 5553
No 239
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.31 E-value=1.7e+02 Score=33.12 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169 648 RQLEKQLLQVSEGMKGKEEICSNVQRKVKELE 679 (860)
Q Consensus 648 ~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele 679 (860)
+.||..+..+.+.....+-.++++.++..+.+
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 33444444444433333333444444443333
No 240
>PRK08727 hypothetical protein; Validated
Probab=73.02 E-value=1.5 Score=46.76 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.6
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
-.|+-||++||||||-+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999763
No 241
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=72.87 E-value=2.5 Score=52.76 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.2
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
|.-++..|+||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677788999999999987
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.46 E-value=1.4 Score=45.78 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=14.5
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 5788999999999997
No 243
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=72.23 E-value=1.6e+02 Score=32.55 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 037169 716 SGMLQQKIAE 725 (860)
Q Consensus 716 ~~~lq~qi~e 725 (860)
...++.+|.+
T Consensus 286 ~~~l~~ei~~ 295 (297)
T PF02841_consen 286 AEKLQKEIQD 295 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 244
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.12 E-value=89 Score=34.40 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.6
Q ss_pred cccCCCCcc
Q 037169 519 HIPYRNSKL 527 (860)
Q Consensus 519 hVPYRdSKL 527 (860)
|-+|..|.+
T Consensus 10 ~~~yg~ss~ 18 (305)
T PF15290_consen 10 RDSYGPSST 18 (305)
T ss_pred cccccCcCC
Confidence 445555543
No 245
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.12 E-value=89 Score=29.44 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 037169 693 ALHHKVRELENRLKAR 708 (860)
Q Consensus 693 ~le~ki~~lE~kl~~~ 708 (860)
.+..+++.++..++.+
T Consensus 71 ~l~~r~e~ie~~i~~l 86 (110)
T TIGR02338 71 ELKEKKETLELRVKTL 86 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 246
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=99 Score=29.95 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 037169 694 LHHKVRELENRL 705 (860)
Q Consensus 694 le~ki~~lE~kl 705 (860)
|..+.+.+|.++
T Consensus 75 L~er~E~Le~ri 86 (119)
T COG1382 75 LEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 247
>PRK10865 protein disaggregation chaperone; Provisional
Probab=71.72 E-value=17 Score=46.30 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
+.++-+|+||+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999975
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.32 E-value=20 Score=36.29 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--chHHHHHHHHHHHHHHHHHHHH
Q 037169 627 KNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMK--GKEEICSNVQRKVKELENKLKE 684 (860)
Q Consensus 627 ~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~--~~ee~~~~lq~~~~ele~~l~~ 684 (860)
..+..++.+|+.++..+......++.++..+..... .....+.++..++.+++.+|..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666666666655554332 1223334444444444444443
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.30 E-value=1.7 Score=40.54 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.1
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999865
No 250
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=71.30 E-value=1.9 Score=44.64 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..|..++...+-.++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 4566777655555666999999999987
No 251
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.23 E-value=1.8 Score=54.11 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=23.0
Q ss_pred chhhHHHhhC--CccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLD--GYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~--G~N~~IfaYGqTGSGKTyTM 341 (860)
+..++..++. |-+.++|-||+||+|||.|+
T Consensus 767 LasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 767 VHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3456666665 44567899999999999987
No 252
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.01 E-value=3.8e+02 Score=36.29 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=11.9
Q ss_pred CCCcccCCCC--cchhhcccccC
Q 037169 516 KSGHIPYRNS--KLTHLLQDSLG 536 (860)
Q Consensus 516 ~~~hVPYRdS--KLT~LLqdsLg 536 (860)
.++.++|+-. +|+.+|.++|-
T Consensus 193 r~P~Ls~~~~~~~l~~~l~~~l~ 215 (1353)
T TIGR02680 193 RQPQLSKKPDEGVLSDALTEALP 215 (1353)
T ss_pred cCCCCCCCCChHHHHHHHHHhCC
Confidence 3445555544 46666666664
No 253
>PRK08084 DNA replication initiation factor; Provisional
Probab=70.91 E-value=1.7 Score=46.29 Aligned_cols=18 Identities=17% Similarity=0.553 Sum_probs=16.0
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
..++-||++|+||||.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 478999999999999874
No 254
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.87 E-value=65 Score=31.49 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 191 FQNLCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIW 235 (860)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (860)
++...+.+..+.+..+++.=...+..+-..+......|+.++..+
T Consensus 78 De~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 78 DEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555544555555555555555555555444
No 255
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=1.6e+02 Score=36.67 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 627 KNQQEKINELESQLESKTQLCRQL 650 (860)
Q Consensus 627 ~~~~~k~~ele~~l~~~~~~~~~l 650 (860)
..+..++..++.++...+.....+
T Consensus 520 ~~~~~~i~~leeq~~~lt~~~~~l 543 (698)
T KOG0978|consen 520 DKLELKIGKLEEQERGLTSNESKL 543 (698)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhh
Confidence 334444444544444433333333
No 256
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=70.54 E-value=1.7 Score=50.76 Aligned_cols=19 Identities=47% Similarity=0.927 Sum_probs=16.6
Q ss_pred ccEEEEeeccCCCCcccccc
Q 037169 323 YNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~ 342 (860)
||. +|-||++|+||||.|.
T Consensus 130 ~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 130 YNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCe-EEEEcCCCCcHHHHHH
Confidence 665 9999999999999874
No 257
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.48 E-value=2.5e+02 Score=33.88 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=12.2
Q ss_pred CCCccccccCccccccccccccccccc
Q 037169 765 MDPPSLRILNHNGSNRAMNTESESDLL 791 (860)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (860)
.++..|.-.. +-++.-.+|+-|.||
T Consensus 288 ~eh~~l~kl~--~Dl~tel~~p~sDl~ 312 (772)
T KOG0999|consen 288 EEHGALKKLA--SDLFTELQGPVSDLF 312 (772)
T ss_pred hhcchhhhcc--chhhhhccCchhHHH
Confidence 3455565555 445544444334444
No 258
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=70.35 E-value=76 Score=37.60 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=21.5
Q ss_pred CCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEecccc
Q 037169 348 RGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQI 385 (860)
Q Consensus 348 ~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i 385 (860)
.=.||-+++.||........- ..+.++..++|...+
T Consensus 356 q~~I~e~ve~i~~ts~q~a~l--~~~l~i~~~ny~~~~ 391 (596)
T KOG4360|consen 356 QKRIFETVEQINETSQQMAEL--PEVLVIPGSNYSSQQ 391 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cccccCCcchhhhhh
Confidence 346778888888877654432 235555566664443
No 259
>PRK06526 transposase; Provisional
Probab=70.32 E-value=1.5 Score=47.53 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.8
Q ss_pred CccEEEEeeccCCCCccccccC
Q 037169 322 GYNVCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM~G 343 (860)
|.| |+.||++|+||||.+.+
T Consensus 98 ~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 98 KEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred Cce--EEEEeCCCCchHHHHHH
Confidence 444 78999999999999864
No 260
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.27 E-value=1.7e+02 Score=31.91 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhhchHHHHHHHHHHHHHHH
Q 037169 635 ELESQLESKTQLCRQLEKQLLQVS-----EGMKGKEEICSNVQRKVKELE 679 (860)
Q Consensus 635 ele~~l~~~~~~~~~le~~l~~l~-----~~~~~~ee~~~~lq~~~~ele 679 (860)
.|...++...+.+.+++.+|.... ...+-....|..|+++..+|-
T Consensus 181 rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG 230 (330)
T KOG2991|consen 181 RLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELG 230 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555543321 223334566777777766664
No 261
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.23 E-value=1.2e+02 Score=32.80 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 630 QEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 630 ~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
++++..+..+...+.....+++.+++.+.......+.....+++++.+++..+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333344444444444444444333
No 262
>PRK05642 DNA replication initiation factor; Validated
Probab=70.15 E-value=2.2 Score=45.53 Aligned_cols=18 Identities=22% Similarity=0.706 Sum_probs=15.5
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
..++-||++|+||||-+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468899999999999763
No 263
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.08 E-value=2.7e+02 Score=34.09 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037169 697 KVRELENRLKARTQEFE 713 (860)
Q Consensus 697 ki~~lE~kl~~~~~~~e 713 (860)
+|..+|.+++....+++
T Consensus 318 qI~~le~~l~~~~~~le 334 (629)
T KOG0963|consen 318 QISALEKELKAKISELE 334 (629)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 264
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=69.96 E-value=11 Score=44.34 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.|+-||++|||||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999876
No 265
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.85 E-value=2.8e+02 Score=34.35 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=33.1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHHHHHHHHHHHhh
Q 037169 611 NFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICS-NVQRKVKELENKLKEHD 686 (860)
Q Consensus 611 ~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~-~lq~~~~ele~~l~~~~ 686 (860)
+...|......+++.+...++.+.+++.++....+-......+-..+...+....+++. .+++++.+++..+.+..
T Consensus 515 E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L 591 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQL 591 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555543333333333333333333333333333 45566666665555443
No 266
>PF13479 AAA_24: AAA domain
Probab=69.73 E-value=2.2 Score=44.76 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.0
Q ss_pred cEEEEeeccCCCCccccccC
Q 037169 324 NVCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~G 343 (860)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999998754
No 267
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=69.35 E-value=2.4 Score=47.61 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=22.2
Q ss_pred chhhHHHhhCC-ccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLDG-YNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~G-~N~~IfaYGqTGSGKTyTM 341 (860)
+...+..++.| ...+++-||++|+|||+++
T Consensus 27 l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 27 LAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34455555554 5568999999999999975
No 268
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.23 E-value=1.5e+02 Score=34.33 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=12.0
Q ss_pred HhhhhHHHHHHHHHHhcc
Q 037169 498 NINRSLSALGDVISSLAT 515 (860)
Q Consensus 498 ~INkSL~aLg~vI~aL~~ 515 (860)
.|=+|=..+..|+..|.-
T Consensus 74 ~il~S~~v~~~Vi~~l~l 91 (444)
T TIGR03017 74 DIINSDRVAKKVVDKLKL 91 (444)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 445566777788877753
No 269
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.17 E-value=2.7e+02 Score=33.85 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169 608 LEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 608 le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~ 685 (860)
++..+..+...+......+..+...+.++...+....+...++...+..+...-..+.+.+..++..+..+...+...
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333334444555666667777777766666666666677666666666666666666666666655543
No 270
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=68.74 E-value=1.1e+02 Score=29.11 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL 220 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (860)
++.+..+...+..-+.++......+..-|..|.....+|..-....+.. +..+..+...+++...... ..+.+
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~f------lken~~k~~rA~k~a~~e~-k~~~~ 78 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKF------LKENEAKRERAEKRAEEEK-KKKEE 78 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHH-HHHHH
Confidence 3444455555555555555555555555555555555554433333221 1222222222333332222 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 037169 221 WIIAMNELERKILIWKEEHSQLAREAHECASSV 253 (860)
Q Consensus 221 ~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~ 253 (860)
....+..|...+..++.++..+...+..+....
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~ 111 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYKKYE 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888877777664433
No 271
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=68.47 E-value=3.1e+02 Score=34.23 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 037169 724 AELEEKLRKKEEYA 737 (860)
Q Consensus 724 ~eLe~kl~~Qeeq~ 737 (860)
.-+++++......+
T Consensus 604 ~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 604 KRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 272
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=68.28 E-value=2.7 Score=46.72 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=22.2
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
...++..++.+ ...|+-.|+||||||++|
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 44566666764 456778999999999987
No 273
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.07 E-value=2e+02 Score=36.12 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=8.1
Q ss_pred ccccCCCCCCCccccccc
Q 037169 741 CFREMPVTTPYNATVSRV 758 (860)
Q Consensus 741 ~~~~~~~~~p~~~~~~~~ 758 (860)
.++.|..-.|+-.+....
T Consensus 835 ~le~m~~~~~~la~e~~~ 852 (970)
T KOG0946|consen 835 SLESMGSTEKNLANELKL 852 (970)
T ss_pred hhHHhhccccchhhHHHH
Confidence 334444455555444333
No 274
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=67.99 E-value=2.9 Score=43.47 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=18.4
Q ss_pred CCccEEEEeeccCCCCccccc
Q 037169 321 DGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 321 ~G~N~~IfaYGqTGSGKTyTM 341 (860)
.+....|+-||++||||||..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHH
Confidence 566778999999999999976
No 275
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.93 E-value=3.1e+02 Score=33.99 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 037169 173 TAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLY 214 (860)
Q Consensus 173 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (860)
++...-++..+.-+.-+.|.|.+|.--++.++.+-.++....
T Consensus 109 qenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~n 150 (786)
T PF05483_consen 109 QENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKEN 150 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhh
Confidence 333333444444444444555555555555555555544443
No 276
>PRK09343 prefoldin subunit beta; Provisional
Probab=67.84 E-value=1.2e+02 Score=29.24 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 037169 719 LQQKIAELEEKLR 731 (860)
Q Consensus 719 lq~qi~eLe~kl~ 731 (860)
++.++.+++..++
T Consensus 97 l~~~l~e~q~~l~ 109 (121)
T PRK09343 97 LREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 277
>PRK09087 hypothetical protein; Validated
Probab=67.80 E-value=2.6 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.0
Q ss_pred ccEEEEeeccCCCCcccccc
Q 037169 323 YNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~ 342 (860)
.+..++-||++||||||-+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35568999999999999874
No 278
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.80 E-value=1.6e+02 Score=34.36 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHH
Q 037169 584 LQKVKMMLEKTKQEVGSKDDVIQKLEE 610 (860)
Q Consensus 584 ~~~lk~~l~~~k~e~~~~~~~i~~le~ 610 (860)
+.++..+++.+..+...++..++.|++
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~ 171 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQ 171 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666555555555544
No 279
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=67.60 E-value=2.1 Score=49.46 Aligned_cols=19 Identities=47% Similarity=0.905 Sum_probs=16.3
Q ss_pred ccEEEEeeccCCCCcccccc
Q 037169 323 YNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~ 342 (860)
|| -+|-||++|+||||-|.
T Consensus 113 ~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 113 YN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CC-cEEEECCCCCCHHHHHH
Confidence 44 47899999999999984
No 280
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=67.37 E-value=2.6 Score=43.34 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=16.5
Q ss_pred HHHhhCCccEEEEeeccCCCCcccccc
Q 037169 316 VTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 316 V~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
|..++.--. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444444333 56679999999999873
No 281
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.18 E-value=1.7 Score=44.67 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=20.2
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.+...+-.|.+.+++-||+.|+|||+.|
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444344466889999999999999977
No 282
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.04 E-value=2.1e+02 Score=33.81 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=17.6
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 615 LEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQL 654 (860)
Q Consensus 615 l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l 654 (860)
++.+........+.++..+...|++++.++.....|..++
T Consensus 321 mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 321 MKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333344444445555555554444444444433
No 283
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.98 E-value=2.8 Score=49.14 Aligned_cols=62 Identities=26% Similarity=0.436 Sum_probs=39.5
Q ss_pred HHHhhCCccEEEEeeccCCCCccccccCCC---------C-----CCCchhh---------HHHHHHHHHHHhcCCceEE
Q 037169 316 VTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---------Q-----NRGVNYR---------TLELLFKIAEERKETFTYS 372 (860)
Q Consensus 316 V~~~l~G~N~~IfaYGqTGSGKTyTM~G~~---------~-----~~GIipR---------al~~LF~~~~~~~~~~~~~ 372 (860)
|..+.+|... +|++|||||||+...++- . ..|..|+ .+.+||+.... ..|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k----~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK----FSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh----hccc
Confidence 4455667665 899999999999987641 1 1122232 34566665543 4566
Q ss_pred EEEEEEEEecc
Q 037169 373 ISVSALEVYNE 383 (860)
Q Consensus 373 V~vS~lEIYnE 383 (860)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 67777888976
No 284
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=66.96 E-value=2.8e+02 Score=36.54 Aligned_cols=6 Identities=17% Similarity=0.561 Sum_probs=2.7
Q ss_pred CceEEE
Q 037169 448 RSHCML 453 (860)
Q Consensus 448 RSH~If 453 (860)
+.|.+|
T Consensus 336 k~HpFF 341 (1317)
T KOG0612|consen 336 KNHPFF 341 (1317)
T ss_pred HhCccc
Confidence 344444
No 285
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.94 E-value=3e+02 Score=33.44 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 037169 716 SGMLQQKIAELEEKLR 731 (860)
Q Consensus 716 ~~~lq~qi~eLe~kl~ 731 (860)
...+..++..|++-+.
T Consensus 380 l~~~~~~~~~le~~~~ 395 (582)
T PF09731_consen 380 LAELNSRLKALEEALD 395 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 286
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.90 E-value=2.3 Score=39.77 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999965
No 287
>PRK12377 putative replication protein; Provisional
Probab=66.88 E-value=2.5 Score=45.75 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=24.1
Q ss_pred eccchhhHHHhhCCccEEEEeeccCCCCccccccC
Q 037169 309 FADASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 309 f~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G 343 (860)
+..+..++..+..+. ..++-||++|+||||.+.+
T Consensus 87 ~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 87 LSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred HHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 334555666665554 4678899999999998853
No 288
>PRK08181 transposase; Validated
Probab=66.79 E-value=2.7 Score=46.10 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCccEEEEeeccCCCCccccccCCC-----CCCCchhhHHHHHHHHHH
Q 037169 321 DGYNVCIFAYGQTGTGKTFTMEGTQ-----QNRGVNYRTLELLFKIAE 363 (860)
Q Consensus 321 ~G~N~~IfaYGqTGSGKTyTM~G~~-----~~~GIipRal~~LF~~~~ 363 (860)
.|.| |+-||++|+||||-+.+-. ...-+++..+.+|+..+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 4555 8899999999999886521 112244445556666554
No 289
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.79 E-value=3.5e+02 Score=34.27 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 037169 212 SLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECAS 251 (860)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~ 251 (860)
.++...+.+....+..|+.++..+..|...|..|+|-...
T Consensus 123 ~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~k 162 (769)
T PF05911_consen 123 AELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSK 162 (769)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777777777777777666543
No 290
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.20 E-value=3.3e+02 Score=33.75 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhcc
Q 037169 503 LSALGDVISSLAT 515 (860)
Q Consensus 503 L~aLg~vI~aL~~ 515 (860)
+..+.+++.+|.+
T Consensus 64 ~~~~~~~l~~Lqn 76 (716)
T KOG4593|consen 64 LMQLEDELMQLQN 76 (716)
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555543
No 291
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=66.03 E-value=3.3 Score=46.62 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=21.3
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
...++..++.+. ..|+-.|.||||||.+|
T Consensus 133 ~~~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 133 QASVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 345666666543 34788999999999988
No 292
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.88 E-value=45 Score=35.40 Aligned_cols=45 Identities=20% Similarity=0.145 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037169 145 AKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNK 189 (860)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 189 (860)
.++....++++.+++....+-.++...++.+.++++.+...|..+
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777778878888888877777776554
No 293
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.79 E-value=3.2e+02 Score=34.32 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=14.4
Q ss_pred CCCcceeEEEecCCCCCCHHhHHHHH
Q 037169 536 GGDSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 536 gGnskT~mI~~VSP~~~~~~ETl~TL 561 (860)
++++.++-|-.-+|.+.-...-+++|
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~l 249 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSI 249 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHH
Confidence 34455555556666655555555554
No 294
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.63 E-value=2.7e+02 Score=34.89 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=3.5
Q ss_pred HhHHHHHHH
Q 037169 555 GETLSSLNF 563 (860)
Q Consensus 555 ~ETl~TL~f 563 (860)
+.+++.|-+
T Consensus 366 E~cislLPa 374 (861)
T PF15254_consen 366 EACISLLPA 374 (861)
T ss_pred HHHHHhhhh
Confidence 333444433
No 295
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=65.32 E-value=2.3e+02 Score=31.62 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=10.5
Q ss_pred hHhhhhHHHHHHHHHHhcc
Q 037169 497 QNINRSLSALGDVISSLAT 515 (860)
Q Consensus 497 ~~INkSL~aLg~vI~aL~~ 515 (860)
..||.-+..|-..+..+..
T Consensus 79 ~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 79 DEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556556555555543
No 296
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=65.19 E-value=2.4e+02 Score=33.56 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 037169 696 HKVRELENRLKARTQEFEVHSGML 719 (860)
Q Consensus 696 ~ki~~lE~kl~~~~~~~e~~~~~l 719 (860)
+.++++..++..+.+..+.++.-+
T Consensus 183 ~mv~~yr~ki~aL~~aIe~Er~~m 206 (508)
T PF00901_consen 183 KMVEEYRQKIDALKNAIEVEREGM 206 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445556666666666665544333
No 297
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=65.19 E-value=66 Score=30.28 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 037169 630 QEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVK 676 (860)
Q Consensus 630 ~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ 676 (860)
+.+...|..++......+..++.+++.+.-+..........+|.++.
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666665555555555555554444
No 298
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.85 E-value=35 Score=37.17 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhccCCCeEEEEEeCCC
Q 037169 223 IAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRVFCRCRPL 278 (860)
Q Consensus 223 ~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~gnIrV~~RvRP~ 278 (860)
+..++|..++..+++|+..|. |.-.+ +- .-+..+|.-+|.|.+.|-
T Consensus 45 aqrneln~kvr~lreel~~lq-e~gsy---vg------ev~k~m~k~kVLVKvhpe 90 (404)
T KOG0728|consen 45 AQRNELNAKVRLLREELQLLQ-EPGSY---VG------EVVKAMGKKKVLVKVHPE 90 (404)
T ss_pred HHHHHHhHHHHHHHHHHHHHh-cCcch---HH------HHHHhcCcceEEEEEcCC
Confidence 344555666666666655332 22211 11 112456899999999994
No 299
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.83 E-value=3.1e+02 Score=32.85 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=5.2
Q ss_pred HhHhhhhHHH
Q 037169 496 AQNINRSLSA 505 (860)
Q Consensus 496 ~~~INkSL~a 505 (860)
+..|-.||..
T Consensus 81 aAkiGqsllk 90 (596)
T KOG4360|consen 81 AAKIGQSLLK 90 (596)
T ss_pred HHHHHHHHHh
Confidence 4455555543
No 300
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=64.53 E-value=2.1e+02 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 037169 142 KSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRM 184 (860)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (860)
.+++-+-..+..|..++..+..++..+......+..+|++.-.
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677766666666666666666666666665543
No 301
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=64.36 E-value=2.8 Score=47.81 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEecc
Q 037169 326 CIFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNE 383 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE 383 (860)
-|+-||.+||||||+. ..+|+..+. -.|++.++|-|+=
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~n~------~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKLNL------ENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhcCC------cceeeehHHhccH
Confidence 4689999999999975 566766521 2388888888743
No 302
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.25 E-value=4.1 Score=40.03 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=20.3
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccccC
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~G 343 (860)
.++..++++. ..++..|+||||||.++..
T Consensus 15 ~~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 15 EAIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3566666663 3446678999999998753
No 303
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=64.22 E-value=2.3e+02 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 206 KLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHE 248 (860)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~ 248 (860)
++..+...|..........+.+++.+++.+++++..|..++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555566666666777666666666555443
No 304
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.00 E-value=2.1e+02 Score=30.78 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037169 633 INELESQLESKTQLCRQLEKQLL 655 (860)
Q Consensus 633 ~~ele~~l~~~~~~~~~le~~l~ 655 (860)
+..++.++....+.+.+++.+++
T Consensus 72 ~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443344444444333
No 305
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=63.97 E-value=2.1 Score=51.96 Aligned_cols=20 Identities=45% Similarity=0.938 Sum_probs=17.3
Q ss_pred CccEEEEeeccCCCCcccccc
Q 037169 322 GYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM~ 342 (860)
+||. ||-||.+|+||||-+.
T Consensus 313 ~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 313 AYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred cCCc-EEEECCCCCCHHHHHH
Confidence 5676 8999999999999874
No 306
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=63.94 E-value=6.8 Score=48.24 Aligned_cols=72 Identities=25% Similarity=0.231 Sum_probs=45.1
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccccCCC---CCCCch----hhHHHHHHHHHHHhcCCceEEEEEEEEEEeccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTMEGTQ---QNRGVN----YRTLELLFKIAEERKETFTYSISVSALEVYNEQIR 386 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM~G~~---~~~GIi----pRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~ 386 (860)
.|+..+-+|...- ..+|.||||||+||..-- ..+-|+ -....+|++.+...-....+..+|||+.-|.-..|
T Consensus 20 ~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 20 KLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCcccc
Confidence 4555555553222 378999999999996531 122222 13456677766655444457789999999966554
No 307
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.92 E-value=3.6 Score=42.07 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.6
Q ss_pred EEEEeeccCCCCccccccC
Q 037169 325 VCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~G 343 (860)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588999999999998754
No 308
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.76 E-value=4 Score=42.94 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=17.1
Q ss_pred hHHHhhCCccEEEEeeccCCCCccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
+++.++ .+-.+++.|+.||||||.-
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHH
Confidence 445555 6668999999999999864
No 309
>PRK08116 hypothetical protein; Validated
Probab=63.69 E-value=3.1 Score=45.46 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=21.3
Q ss_pred chhhHHHhhC--CccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLD--GYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~--G~N~~IfaYGqTGSGKTyTM~ 342 (860)
+...++.+.. +.|..++-||++||||||.+.
T Consensus 100 a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 100 ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 3444444432 345568999999999999874
No 310
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=63.33 E-value=6.6 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=21.4
Q ss_pred hHHHhhCCccEEEEeeccCCCCccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.+..+.+|+|+.|.| |||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 566778999999887 8999999874
No 311
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=63.32 E-value=1.6 Score=43.55 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=13.0
Q ss_pred hCCccEEEEeeccCCCCccccc
Q 037169 320 LDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 320 l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..|...+++-+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4577788999999999999975
No 312
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=63.01 E-value=3.4e+02 Score=32.74 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=29.8
Q ss_pred hHHHHh-hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 135 QDKLMR-MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGL 186 (860)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 186 (860)
|.-+.. .+.+.+|...+......-...-.+.......+..++.+|+.+..+-
T Consensus 33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~ 85 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEE 85 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 4556666666666655555555555566666666666666655543
No 313
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=62.91 E-value=4.5 Score=42.48 Aligned_cols=27 Identities=11% Similarity=0.396 Sum_probs=19.8
Q ss_pred hHHHhhC--CccEEEEeeccCCCCccccc
Q 037169 315 LVTSVLD--GYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 315 lV~~~l~--G~N~~IfaYGqTGSGKTyTM 341 (860)
.+..+.. +.+..++-||++||||||.+
T Consensus 31 ~l~~~~~~~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 31 RLRELAAGPVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred HHHHHHhccCCCCeEEEECCCCCCHHHHH
Confidence 3444444 34567899999999999976
No 314
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.88 E-value=3.7e+02 Score=33.19 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q 037169 605 IQKLEENFQNLEVKA 619 (860)
Q Consensus 605 i~~le~~~~~l~~~~ 619 (860)
+..+++++..+..++
T Consensus 400 ~~~~e~el~~l~~~l 414 (650)
T TIGR03185 400 LRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 315
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.84 E-value=1.4e+02 Score=31.17 Aligned_cols=72 Identities=28% Similarity=0.319 Sum_probs=37.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcccccccccccc--cChhhHHHHhhhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 037169 97 PIVNGICIKNATNVPESLGDHGHLICNGCGTEIE--ITPAQDKLMRMKSMAKCEKRIKELKIQCQLKTDECYEA 168 (860)
Q Consensus 97 p~InaIEI~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (860)
|...||--+.+..+-...+..|.+-|..|++-.= .=|.|....+...++++.++++.++.++.....++.++
T Consensus 22 pK~~gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 22 PKEKGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred ccccCCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444433333455566777777776522 33445555455555666666665555555444444333
No 316
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=62.61 E-value=3.6 Score=46.37 Aligned_cols=73 Identities=26% Similarity=0.281 Sum_probs=46.5
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCccccccC-----CCCCC----------------------------CchhhHHHHH
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTMEG-----TQQNR----------------------------GVNYRTLELL 358 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~G-----~~~~~----------------------------GIipRal~~L 358 (860)
+..++-.++.++ +-|+-.|.||||||+++.- ++.++ |----++.+|
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dL 240 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDL 240 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHH
Confidence 456677777776 7889999999999998732 11111 2222345666
Q ss_pred HHHHHHhcCCceEEEEEEEEEEeccccccccC
Q 037169 359 FKIAEERKETFTYSISVSALEVYNEQIRDLLD 390 (860)
Q Consensus 359 F~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 390 (860)
....=...++ .+-+-|++....+|||.
T Consensus 241 vkn~LRmRPD-----RIiVGEVRG~Ea~dLL~ 267 (355)
T COG4962 241 VKNALRMRPD-----RIIVGEVRGVEALDLLQ 267 (355)
T ss_pred HHHHhhcCcc-----ceEEEEecCccHHHHHH
Confidence 6543332222 24467999999999995
No 317
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=62.61 E-value=3.3 Score=39.63 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.|+.+|++|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999854
No 318
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=62.61 E-value=4 Score=46.48 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=21.3
Q ss_pred chhhHHHhhC-CccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLD-GYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~-G~N~~IfaYGqTGSGKTyTM 341 (860)
+...+..++. +....++-||++|+|||+++
T Consensus 42 l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 42 LAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3344444554 44567899999999999976
No 319
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.55 E-value=3.8e+02 Score=33.21 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhc
Q 037169 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKG 621 (860)
Q Consensus 585 ~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~ 621 (860)
..+..+.+.+++-+......|+++...|..|+.++..
T Consensus 172 ~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn 208 (786)
T PF05483_consen 172 KKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAEN 208 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344444444444444455566666666666665543
No 320
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.51 E-value=3.6 Score=47.45 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=15.2
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
..|+.+|+||+|||.|+
T Consensus 175 ~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 175 RVFILVGPTGVGKTTTI 191 (388)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999997
No 321
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=62.42 E-value=4.2 Score=41.59 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=21.1
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
..+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34566666653 3456778999999999873
No 322
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.26 E-value=2.4e+02 Score=31.86 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 037169 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGK 664 (860)
Q Consensus 585 ~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ 664 (860)
..|..+++.+++++.....-++.|.+.+...+....+....... ..-..+-.+++.....+.+|+..+..+.......
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444555555555544433322111100 1122333444555555666666665555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037169 665 EEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 665 ee~~~~lq~~~~ele~~l~~~ 685 (860)
...-+.++.++..|..+|...
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777666543
No 323
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.11 E-value=1.5e+02 Score=30.76 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHH----------------HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEA----------------WMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQA 204 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (860)
+.++.++..++.+.+..|.........- ...|+++-..|+.-..-...+...|.-|-..++...
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544433110 123444444444444444444445544555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 205 AKLKDVASLYERDKRLWIIAMNELERKILIWKEEHS 240 (860)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 240 (860)
..-..|+.++..+...|...-.+|..+-..++.|..
T Consensus 95 ~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777766666666666655433
No 324
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.08 E-value=1.9e+02 Score=29.44 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037169 635 ELESQLESKTQLCRQLEK 652 (860)
Q Consensus 635 ele~~l~~~~~~~~~le~ 652 (860)
.|..+.........+.+.
T Consensus 61 ~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 61 QLETQYEREKELRKQAEE 78 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 325
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.06 E-value=2.5e+02 Score=32.69 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL 220 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (860)
+..++.+..+|..+++++........ +.+..||... ..+... ++.-++..++...+.
T Consensus 3 ~~~~~~l~~Ki~~~~eqi~~e~~~rd-------------~nv~eyLkl~-------~~aDk~---Q~~rIkq~FekkNqk 59 (395)
T PF10267_consen 3 RAAIDHLQQKILKLKEQIKVEQTARD-------------ENVAEYLKLA-------SNADKQ---QAARIKQVFEKKNQK 59 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHh-------hhccHH---HHHHHHHHHHHHhHH
Confidence 45667777777777766544332211 3444555331 111122 344566777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037169 221 WIIAMNELERKILIWKE 237 (860)
Q Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (860)
.+..+..||+++.....
T Consensus 60 sa~~i~~lqkkL~~y~~ 76 (395)
T PF10267_consen 60 SAQTIAQLQKKLEQYHK 76 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888776643
No 326
>PTZ00424 helicase 45; Provisional
Probab=62.05 E-value=4.1 Score=46.36 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..+++|.|+. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 5677888999965 5689999999865
No 327
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=61.99 E-value=72 Score=40.72 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.1
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
.+.++-+|+||+|||++.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467778999999999865
No 328
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.94 E-value=3.9e+02 Score=33.06 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999877
No 329
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.93 E-value=1.8e+02 Score=35.01 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037169 144 MAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYER 216 (860)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (860)
|+.+++....|++.+...+.+..|...+|-.+......+..---++..+..+++=.++.+.+++-++..++..
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444433333332222222222223334455555566666555555533
No 330
>PRK11281 hypothetical protein; Provisional
Probab=61.88 E-value=4.9e+02 Score=34.55 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037169 717 GMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qe 734 (860)
+.++.++..|++.+-+++
T Consensus 237 ~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 237 QRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444544444433
No 331
>PRK06921 hypothetical protein; Provisional
Probab=61.59 E-value=3.6 Score=44.94 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.1
Q ss_pred cEEEEeeccCCCCcccccc
Q 037169 324 NVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~ 342 (860)
...++-||++|+||||.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4568889999999999874
No 332
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=61.40 E-value=2.8 Score=38.98 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=19.1
Q ss_pred EEeeccCCCCccccccCCCCCCCchhhHHHHHHHHH
Q 037169 327 IFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIA 362 (860)
Q Consensus 327 IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~ 362 (860)
|+-||++|.|||+.+ -..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999976 34555555555
No 333
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.39 E-value=58 Score=34.61 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 037169 694 LHHKVRELENR 704 (860)
Q Consensus 694 le~ki~~lE~k 704 (860)
|+++..+|+..
T Consensus 196 L~~r~~ELe~~ 206 (290)
T COG4026 196 LKKRWDELEPG 206 (290)
T ss_pred HHHHHHHhccc
Confidence 44444444444
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.38 E-value=3.5 Score=45.30 Aligned_cols=17 Identities=47% Similarity=0.595 Sum_probs=13.5
Q ss_pred EEEeeccCCCCcccccc
Q 037169 326 CIFAYGQTGTGKTFTME 342 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~ 342 (860)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44455999999999973
No 335
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=61.23 E-value=3.4 Score=46.87 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=20.8
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
...++..++.+ ...|+..|+||||||++|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 34455555542 3446778999999999884
No 336
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.08 E-value=3.7e+02 Score=32.51 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=5.9
Q ss_pred HHHhhhhchHHHHHHH
Q 037169 656 QVSEGMKGKEEICSNV 671 (860)
Q Consensus 656 ~l~~~~~~~ee~~~~l 671 (860)
.+.+...+.....+.+
T Consensus 174 ELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 174 ELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHhcchHHHHHHHH
Confidence 3333333333333333
No 337
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.06 E-value=1.4e+02 Score=27.74 Aligned_cols=40 Identities=35% Similarity=0.506 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 037169 689 ENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRK 732 (860)
Q Consensus 689 ~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~ 732 (860)
+++..+..+++.++..++.+...++ .++.++.+++.++++
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~----~l~~~~~elk~~l~~ 102 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEE----DLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3334455555555555544443322 344444444444443
No 338
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=61.00 E-value=5.1 Score=40.84 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=20.6
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 45677777887 577889999999873
No 339
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=60.96 E-value=4.7 Score=44.61 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.5
Q ss_pred CCccEEEEeeccCCCCccccc
Q 037169 321 DGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 321 ~G~N~~IfaYGqTGSGKTyTM 341 (860)
.|....++-||++|||||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345788999999999987
No 340
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=60.83 E-value=3.8 Score=41.72 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999965
No 341
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=60.55 E-value=3.3 Score=47.67 Aligned_cols=16 Identities=44% Similarity=0.798 Sum_probs=14.2
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.+|-||++|+||||.+
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4788999999999977
No 342
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.52 E-value=3.7e+02 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 037169 708 RTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYC 741 (860)
Q Consensus 708 ~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~~~~ 741 (860)
+.++.......++.++.+.+.++...+.++.+.+
T Consensus 349 ~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 349 YREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334455666677777777777777776654
No 343
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.51 E-value=1.2e+02 Score=33.12 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 194 LCLDQALEKQAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLARE 245 (860)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e 245 (860)
.++--.+..|.+-.|.-..++|.+.++....+..|+..++.+++...+|-+.
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888777777777777777777665555533
No 344
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=60.26 E-value=3.2 Score=42.83 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.6
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
-++.+|+||||||.++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999999987
No 345
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=60.23 E-value=3.9e+02 Score=32.50 Aligned_cols=9 Identities=44% Similarity=0.497 Sum_probs=4.2
Q ss_pred ccccccccc
Q 037169 777 GSNRAMNTE 785 (860)
Q Consensus 777 ~~~~~~~~~ 785 (860)
.+|+.|++.
T Consensus 569 ~~~~~~~~~ 577 (607)
T KOG0240|consen 569 ESNTKMEQE 577 (607)
T ss_pred HHHHHHHHH
Confidence 345555544
No 346
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.23 E-value=1.8e+02 Score=29.68 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 196 LDQALEKQAAKLKD-VASLYERDKRLWIIAMNELERKILIW 235 (860)
Q Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (860)
+.+.+..+...++. ++-+++..|..+++....+..++..+
T Consensus 92 l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~ 132 (177)
T PF07798_consen 92 LRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQEL 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444432 44555555555555555555555544
No 347
>PRK07952 DNA replication protein DnaC; Validated
Probab=60.20 E-value=3.3 Score=44.76 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.8
Q ss_pred EEEEeeccCCCCcccccc
Q 037169 325 VCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~ 342 (860)
..++-||++|+||||.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999999874
No 348
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=60.11 E-value=3.6 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=15.8
Q ss_pred CccEEEEeeccCCCCcccccc
Q 037169 322 GYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM~ 342 (860)
-.++.++..|..|||||+||.
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHH
Confidence 367777888999999999983
No 349
>PRK10869 recombination and repair protein; Provisional
Probab=60.10 E-value=3.9e+02 Score=32.49 Aligned_cols=18 Identities=39% Similarity=0.768 Sum_probs=13.5
Q ss_pred CCccEEEEeeccCCCCccccc
Q 037169 321 DGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 321 ~G~N~~IfaYGqTGSGKTyTM 341 (860)
.|.|+ -.|+||||||-.|
T Consensus 22 ~glnv---itGetGaGKS~il 39 (553)
T PRK10869 22 SGMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CCcEE---EECCCCCChHHHH
Confidence 35555 5799999998655
No 350
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=60.08 E-value=4.7 Score=43.14 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=20.2
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+...+......++-+|++|||||+.+
T Consensus 33 ~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 33 AYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3444445544667888999999999876
No 351
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=60.00 E-value=3.6 Score=48.18 Aligned_cols=19 Identities=47% Similarity=0.882 Sum_probs=15.8
Q ss_pred ccEEEEeeccCCCCcccccc
Q 037169 323 YNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~ 342 (860)
|| .+|-||++|+||||.+.
T Consensus 148 ~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 148 YN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CC-eEEEECCCCCCHHHHHH
Confidence 44 47889999999999874
No 352
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=59.98 E-value=4.9 Score=47.04 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=20.6
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..+++|.| +++.+|||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 35667889998 567789999999763
No 353
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=59.87 E-value=2e+02 Score=29.20 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037169 152 KELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGL 186 (860)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 186 (860)
+++..=....+.+|..+...|.+...++..+-.+.
T Consensus 16 ~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~ev 50 (159)
T PF05384_consen 16 EQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEV 50 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444433333
No 354
>PRK08939 primosomal protein DnaI; Reviewed
Probab=59.78 E-value=4.1 Score=45.42 Aligned_cols=19 Identities=26% Similarity=0.721 Sum_probs=16.5
Q ss_pred EEEEeeccCCCCccccccC
Q 037169 325 VCIFAYGQTGTGKTFTMEG 343 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM~G 343 (860)
-.++-||++|+||||-+.+
T Consensus 157 ~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3689999999999998854
No 355
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=59.74 E-value=2.1e+02 Score=31.27 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.4
Q ss_pred CCcccCCCCcchhhcccccCC
Q 037169 517 SGHIPYRNSKLTHLLQDSLGG 537 (860)
Q Consensus 517 ~~hVPYRdSKLT~LLqdsLgG 537 (860)
..+||--.++-||||-|.+.|
T Consensus 92 e~~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 92 EAYVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHHHhcCcccchhHHHHHh
Confidence 356788888999999888754
No 356
>PRK06547 hypothetical protein; Provisional
Probab=59.52 E-value=6.1 Score=40.25 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=20.2
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.++..+..+.--.|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555566666777799999999864
No 357
>PRK11519 tyrosine kinase; Provisional
Probab=59.47 E-value=2.6e+02 Score=35.03 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=14.4
Q ss_pred CcceeEEEecCCCCCCHHhHHHHH
Q 037169 538 DSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 538 nskT~mI~~VSP~~~~~~ETl~TL 561 (860)
++.++-|-.-++++.-....+++|
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHH
Confidence 355555556666666666666665
No 358
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=59.31 E-value=13 Score=45.97 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=25.4
Q ss_pred ccEEEEeeccCCCCccccc--------cCCC--CCCCch----hhHHHHH
Q 037169 323 YNVCIFAYGQTGTGKTFTM--------EGTQ--QNRGVN----YRTLELL 358 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM--------~G~~--~~~GIi----pRal~~L 358 (860)
.|-.++.+|+||||||+-+ ||.+ +++|+| ||=+..|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 4667788999999999987 3443 347777 5655544
No 359
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=59.30 E-value=2.9e+02 Score=30.83 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=14.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 710 QEFEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 710 ~~~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.+.+...-.++++.++|-.+--..++++
T Consensus 267 ae~ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 267 AESEKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444445555555555555555544
No 360
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=59.18 E-value=3e+02 Score=30.82 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 037169 718 MLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 718 ~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.+++.+..++.+.--.++|+
T Consensus 218 s~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544555555
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=58.77 E-value=4.5 Score=45.69 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=19.6
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..++..++.+. ..|+..|+||||||.+|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34555555433 34677899999999988
No 362
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.76 E-value=4e+02 Score=32.19 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=18.3
Q ss_pred eCChHHHHHHHhhhhhcCccccCCCCCCCCCceEEEEEEEE
Q 037169 418 IENIKEVWDVLHIGSNARAVGSNNVNEHSSRSHCMLCISVK 458 (860)
Q Consensus 418 V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~i~v~ 458 (860)
+.+.......+.....++.+.-..++ +-+||.++.|...
T Consensus 122 i~dlQ~q~k~lqrE~~nlkvelelke--ekLsssMnsIKTF 160 (654)
T KOG4809|consen 122 LADLQRQAKLLQREEHNLKVELELKE--EKLSSSMNSIKTF 160 (654)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHH--HHhcCcccccccc
Confidence 33444444444555555544332222 2356666666553
No 363
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.69 E-value=3.5e+02 Score=31.44 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=15.4
Q ss_pred CCCcceeEEEecCCCCCCHHhHHHHH
Q 037169 536 GGDSKTLMFLQISPSEQDLGETLSSL 561 (860)
Q Consensus 536 gGnskT~mI~~VSP~~~~~~ETl~TL 561 (860)
.+++..+-|-.-+|++.-...-.+++
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~ 153 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAF 153 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 34556666666677766655555544
No 364
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.53 E-value=3.1e+02 Score=30.79 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 037169 719 LQQKIAELEEKLR 731 (860)
Q Consensus 719 lq~qi~eLe~kl~ 731 (860)
++..++.||+-|+
T Consensus 148 ~klRLK~LEe~Lk 160 (351)
T PF07058_consen 148 LKLRLKVLEEGLK 160 (351)
T ss_pred HHHHHHHHHhhcc
Confidence 4444455555444
No 365
>PRK13764 ATPase; Provisional
Probab=58.43 E-value=4.8 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=19.5
Q ss_pred hHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
++..+. .....|+..|+||||||+++.
T Consensus 249 l~~~l~-~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 249 LKERLE-ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred HHHHHH-hcCCEEEEECCCCCCHHHHHH
Confidence 444443 334558999999999999984
No 366
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=58.43 E-value=4.4 Score=44.16 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=13.3
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.|+-||++|+|||++-
T Consensus 153 nVLFyGppGTGKTm~A 168 (368)
T COG1223 153 NVLFYGPPGTGKTMMA 168 (368)
T ss_pred eeEEECCCCccHHHHH
Confidence 4678999999998764
No 367
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.25 E-value=1.3e+02 Score=32.80 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 628 NQQEKINELESQLESKTQLCRQLEKQLLQVS 658 (860)
Q Consensus 628 ~~~~k~~ele~~l~~~~~~~~~le~~l~~l~ 658 (860)
.+++++.+++.++++.++++.+||..|..+.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777887777665
No 368
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.81 E-value=1.2e+02 Score=34.02 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169 625 LCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 625 ~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~ 685 (860)
....++.++.++++.+..+...+.+.-..+..++............++.++.+.+..|.++
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444556666666666666555554444555555555555566666777777776666654
No 369
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.77 E-value=3.3e+02 Score=30.87 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 037169 716 SGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 716 ~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
..-|++++..++++..-....+
T Consensus 198 NRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 198 NRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555
No 370
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=57.52 E-value=2.9e+02 Score=33.78 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=9.3
Q ss_pred CCCCCHHhHHHHHHHH
Q 037169 549 PSEQDLGETLSSLNFA 564 (860)
Q Consensus 549 P~~~~~~ETl~TL~fA 564 (860)
|....|+|-|.-|..+
T Consensus 104 ~~~~~yQerLaRLe~d 119 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMD 119 (861)
T ss_pred CcchHHHHHHHHHhcc
Confidence 5555566666666543
No 371
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=57.44 E-value=5.8 Score=45.94 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=21.5
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 45677889988 788899999999863
No 372
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=57.39 E-value=4.3 Score=37.72 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678899999999865
No 373
>PRK14011 prefoldin subunit alpha; Provisional
Probab=56.47 E-value=2.2e+02 Score=28.48 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 037169 688 SENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLR 731 (860)
Q Consensus 688 ~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~ 731 (860)
.+++..+.++++.++...+++...++.......+-..+|+.+++
T Consensus 87 ~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~ 130 (144)
T PRK14011 87 SEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ 130 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777766666666555433333333333334433
No 374
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=56.44 E-value=1.8e+02 Score=34.41 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=28.9
Q ss_pred chhhcccccCCCcceeEEEecCCCCCCHHhHHHHHHHHHHhhc
Q 037169 527 LTHLLQDSLGGDSKTLMFLQISPSEQDLGETLSSLNFASRVRG 569 (860)
Q Consensus 527 LT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl~TL~fA~r~r~ 569 (860)
|..||..+-|-||++-=++|..-......-+.+-|.|+.++..
T Consensus 511 ~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lir 553 (790)
T PF07794_consen 511 LANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIR 553 (790)
T ss_pred HHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHH
Confidence 5667777777787776555555555555557777888877653
No 375
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.42 E-value=3.7e+02 Score=31.38 Aligned_cols=10 Identities=40% Similarity=0.724 Sum_probs=4.6
Q ss_pred cccccccchh
Q 037169 841 GSGRRRKGEW 850 (860)
Q Consensus 841 ~~~~~~~~~~ 850 (860)
|++-|-...|
T Consensus 279 gs~DRtiK~W 288 (459)
T KOG0288|consen 279 GSADRTIKLW 288 (459)
T ss_pred ccccchhhhh
Confidence 4444444455
No 376
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.25 E-value=2.4e+02 Score=35.88 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.4
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
.-+++-.|+.++|||.+|
T Consensus 327 ~~~~iITGpN~gGKTt~l 344 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTL 344 (782)
T ss_pred ceEEEEECCCCCCcHHHH
Confidence 345566899999999887
No 377
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=55.88 E-value=5.6 Score=47.61 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.5
Q ss_pred ccchhhHHHhhCCcc--EEEEeeccCCCCccccc
Q 037169 310 ADASPLVTSVLDGYN--VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 310 ~~v~plV~~~l~G~N--~~IfaYGqTGSGKTyTM 341 (860)
.+|+..++..+.|.. -.++-+||+|+|||.|+
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 347777887776653 56788999999999998
No 378
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=55.86 E-value=5.6 Score=41.11 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=15.3
Q ss_pred CccEEEEeeccCCCCccccc
Q 037169 322 GYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 322 G~N~~IfaYGqTGSGKTyTM 341 (860)
.....||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 44578999999999999876
No 379
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=55.73 E-value=4.4 Score=38.94 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999865
No 380
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=55.32 E-value=3.5e+02 Score=30.50 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 037169 664 KEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENR---LKARTQEFEVHSGMLQQKIAELEEKLR 731 (860)
Q Consensus 664 ~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~k---l~~~~~~~e~~~~~lq~qi~eLe~kl~ 731 (860)
..+....+.+++..+.+++.....+..+ |..+.+..... +......+-.+...++.+|..|+.=.+
T Consensus 241 SNE~F~~fK~E~ekmtKk~kklEKE~l~--wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcR 309 (391)
T KOG1850|consen 241 SNELFTKFKQEMEKMTKKIKKLEKETLI--WRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCR 309 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655444322 55555444332 233333444455566666666665554
No 381
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=55.15 E-value=6.6 Score=45.41 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=20.1
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..++.|.|+ ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 356678899985 45669999999864
No 382
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.91 E-value=4.1e+02 Score=31.20 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 037169 715 HSGMLQQKIAELEEKLRKKEEYATAYCFR 743 (860)
Q Consensus 715 ~~~~lq~qi~eLe~kl~~Qeeq~~~~~~~ 743 (860)
+....+.++..++.++...+.++....+.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~~~I~ 320 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQKGVIK 320 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 44456677777777777777777544444
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.77 E-value=5.4 Score=45.80 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
..|.-+|+||+|||+|+
T Consensus 138 ~ii~lvGptGvGKTTti 154 (374)
T PRK14722 138 GVFALMGPTGVGKTTTT 154 (374)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45668999999999997
No 384
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=54.62 E-value=1.9e+02 Score=31.34 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCcceeEEEecCCCCCCHHhHHHH-------HHHHHHhhccc
Q 037169 537 GDSKTLMFLQISPSEQDLGETLSS-------LNFASRVRGVE 571 (860)
Q Consensus 537 GnskT~mI~~VSP~~~~~~ETl~T-------L~fA~r~r~I~ 571 (860)
|++.-++|..--++...+++-.+| +-||..+|.+.
T Consensus 102 ~d~q~LVvlss~~se~~~s~~r~~~p~pAPP~~FAD~mRtlv 143 (311)
T PF04642_consen 102 GDPQDLVVLSSRESETRESERRSTSPLPAPPMPFADTMRTLV 143 (311)
T ss_pred CCCcceEEecccchhhhhhccccCCCCCCCCccHHHHHHhhc
Confidence 455666666666777777777777 78888888764
No 385
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=54.52 E-value=15 Score=46.45 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
+-.+..|+||||||+.|
T Consensus 442 gn~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLL 458 (811)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34567999999999988
No 386
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=54.51 E-value=12 Score=42.46 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCchhhhCCCceEEEecCCCCCcccee-EEEEec-cchhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 267 GNIRVFCRCRPLSKEEASAGHAMVVDFSAAKDGELGIL-TVDVFA-DASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-~~dVf~-~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
+..||.+=..|.+. .|...++.........+... ....|. +...++..++.+. +.|+-.|+||||||.+|.
T Consensus 124 ~g~Rv~~~~~pvs~----~g~~i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 124 DGTRLHAVLPPVAT----DGTCLSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred CCEEEEEEecCccC----CCcEEEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 56788887777653 23333443322221111110 011122 2556777777754 688889999999998763
No 387
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.45 E-value=89 Score=35.38 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 037169 719 LQQKIAELEEKLRKKEEYATAYC 741 (860)
Q Consensus 719 lq~qi~eLe~kl~~Qeeq~~~~~ 741 (860)
-.+.+.++++++++.+.++...+
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 34566777777777776665444
No 388
>PHA00729 NTP-binding motif containing protein
Probab=54.45 E-value=8.3 Score=41.24 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.0
Q ss_pred hHHHhhCCccEEEEeeccCCCCccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.+..+..|--..|+.+|.+|+||||-.
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 455555444457999999999999965
No 389
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.44 E-value=5.2 Score=43.20 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
-++-||++|||||++.
T Consensus 44 ~vll~GppGtGKTtlA 59 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVA 59 (261)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4677999999999976
No 390
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=54.27 E-value=4.9 Score=47.22 Aligned_cols=19 Identities=47% Similarity=0.981 Sum_probs=15.9
Q ss_pred ccEEEEeeccCCCCcccccc
Q 037169 323 YNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~ 342 (860)
|| .+|-||++|+||||.|.
T Consensus 141 ~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 141 YN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred cC-ceEEECCCCCcHHHHHH
Confidence 44 47899999999999874
No 391
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.08 E-value=3.1e+02 Score=29.47 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 037169 635 ELESQLESK 643 (860)
Q Consensus 635 ele~~l~~~ 643 (860)
.++.++...
T Consensus 96 ~le~~~~~~ 104 (225)
T COG1842 96 SLEDLAKAL 104 (225)
T ss_pred HHHHHHHHH
Confidence 333333333
No 392
>PRK09183 transposase/IS protein; Provisional
Probab=54.04 E-value=5.9 Score=43.05 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCccEEEEeeccCCCCcccccc
Q 037169 321 DGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 321 ~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
.|.| |+-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 3555 4578999999999875
No 393
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.63 E-value=45 Score=39.39 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=15.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 714 VHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 714 ~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
.....++++|++++.++...+.|+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777666666
No 394
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=53.49 E-value=6.2 Score=45.07 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
++..|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 395
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=53.44 E-value=2.6e+02 Score=28.43 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 037169 719 LQQKIAELEEKLR 731 (860)
Q Consensus 719 lq~qi~eLe~kl~ 731 (860)
++..+..++.+..
T Consensus 157 l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 157 LRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 396
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.35 E-value=7.8 Score=45.44 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=21.3
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..+++|.| |++.++||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 46777889998 577789999999874
No 397
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.72 E-value=2.8e+02 Score=28.58 Aligned_cols=8 Identities=38% Similarity=0.463 Sum_probs=3.7
Q ss_pred HhHHHHHH
Q 037169 555 GETLSSLN 562 (860)
Q Consensus 555 ~ETl~TL~ 562 (860)
.+||..|-
T Consensus 43 qk~Ld~La 50 (201)
T KOG4603|consen 43 QKTLDQLA 50 (201)
T ss_pred HHHHHHHH
Confidence 44444443
No 398
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.61 E-value=3.2e+02 Score=29.22 Aligned_cols=55 Identities=16% Similarity=0.353 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 037169 629 QQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 629 ~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
++.++.....++......+.++...+..+...-......+......+.+++..+.
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443333344444444555555555444
No 399
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=52.55 E-value=3.6e+02 Score=29.83 Aligned_cols=44 Identities=39% Similarity=0.477 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhhhhccc
Q 037169 700 ELENRLKARTQEFEVHSGMLQQ-KIAELEEKLRKKEEYATAYCFR 743 (860)
Q Consensus 700 ~lE~kl~~~~~~~e~~~~~lq~-qi~eLe~kl~~Qeeq~~~~~~~ 743 (860)
+++..++..+++++.....|.+ -+.+|+++.+..++-..+..+.
T Consensus 94 eYe~E~~aAk~e~E~~~~lLke~l~seleeKkrkieeeR~smDlt 138 (291)
T KOG4466|consen 94 EYECEIKAAKKEYESKKKLLKENLISELEEKKRKIEEERLSMDLT 138 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4555555555555554444432 3455666666555554444443
No 400
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.50 E-value=8.9 Score=41.57 Aligned_cols=43 Identities=30% Similarity=0.565 Sum_probs=30.8
Q ss_pred EEEeeccCCCCcccccc--------------CCC---CCCCchhhHHHHHHHHHHHhcCC
Q 037169 326 CIFAYGQTGTGKTFTME--------------GTQ---QNRGVNYRTLELLFKIAEERKET 368 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~--------------G~~---~~~GIipRal~~LF~~~~~~~~~ 368 (860)
.|+.||+.|+|||...- |+. .--|=-||.++++|....+....
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPS 250 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCc
Confidence 47899999999975432 211 12366699999999998876543
No 401
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=52.22 E-value=4.7 Score=47.66 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCCCchhhh
Q 037169 267 GNIRVFCRCRPLSKEEAS 284 (860)
Q Consensus 267 gnIrV~~RvRP~~~~E~~ 284 (860)
+|--||-+-||.......
T Consensus 62 ~~~d~ffvtr~~l~~~sp 79 (495)
T PF12004_consen 62 ENKDLFFVTRPPLARSSP 79 (495)
T ss_dssp ------------------
T ss_pred CCCcceeeccCCCCCCCC
Confidence 678888888987655443
No 402
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.86 E-value=3.7e+02 Score=34.16 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.8
Q ss_pred eccCCCCccccc
Q 037169 330 YGQTGTGKTFTM 341 (860)
Q Consensus 330 YGqTGSGKTyTM 341 (860)
.+++.||.|.-+
T Consensus 213 ~~~s~sg~t~y~ 224 (782)
T PRK00409 213 HDQSSSGATLYI 224 (782)
T ss_pred eeEECCCCEEEE
Confidence 456666655544
No 403
>PF15294 Leu_zip: Leucine zipper
Probab=51.61 E-value=2.4e+02 Score=31.21 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL 220 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (860)
.++|+.+..+-+.|+.++......|.....+=..++++|..++...+......... -...++-+|.+.+...|.+
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~-----~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLS-----FKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-----ccccchhhHHHHHHHHHHH
Confidence 68899999999999999999999999988888888888888877444322211000 1122344444444444544
Q ss_pred HHHHHHHHHHHHHHHH
Q 037169 221 WIIAMNELERKILIWK 236 (860)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (860)
+...+.+.....+.++
T Consensus 206 ~ek~~~d~~~~~k~L~ 221 (278)
T PF15294_consen 206 LEKALQDKESQQKALE 221 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 404
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=51.59 E-value=8.5 Score=42.89 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=19.5
Q ss_pred hhHHHhhCC-ccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDG-YNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G-~N~~IfaYGqTGSGKTyTM 341 (860)
.++...+.| ----.+-|||.|+|||.|.
T Consensus 46 ~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 46 QVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 344444444 4445678999999999997
No 405
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.53 E-value=2.7e+02 Score=32.47 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037169 216 RDKRLWIIAMNELERKILIWKEEHSQLAREAHEC 249 (860)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~ 249 (860)
.++.|....-.-.+++.+.--+.+.+|.+.+..+
T Consensus 41 aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y 74 (395)
T PF10267_consen 41 ADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQY 74 (395)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455544444444555555555666666555544
No 406
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=51.45 E-value=36 Score=41.79 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=22.6
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.++..+..++...++-||++|+|||+..
T Consensus 165 ~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 165 ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4556666688888888999999999865
No 407
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=51.39 E-value=15 Score=39.84 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=33.9
Q ss_pred HHHhhCCccEE-EEeeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhcCCceEEEEEEEEEEecccccccc
Q 037169 316 VTSVLDGYNVC-IFAYGQTGTGKTFTMEGTQQNRGVNYRTLELLFKIAEERKETFTYSISVSALEVYNEQIRDLL 389 (860)
Q Consensus 316 V~~~l~G~N~~-IfaYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 389 (860)
...++.|..+- ++-||..|||||.++ ..++....... +..+||..+.+.||-
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G--------LRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG--------LRLIEVSKEDLGDLP 95 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC--------ceEEEECHHHhccHH
Confidence 34677776542 566999999998876 33333333222 567899888777663
No 408
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.12 E-value=76 Score=33.00 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhH
Q 037169 203 QAAKLKDVASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLN 257 (860)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~~~~~ 257 (860)
.++++..+...+..++.++...-..--..+..++.+...+...++.-.+++-.+.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444455555555555444433222334555555555555555555555544443
No 409
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=51.05 E-value=5.4 Score=49.36 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=27.3
Q ss_pred EEeccchhhHHHhh-CCccEEEEeeccCCCCccccc
Q 037169 307 DVFADASPLVTSVL-DGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 307 dVf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyTM 341 (860)
-||.-+......++ .|.|-||+-.|.+|||||.|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 36665555555554 589999999999999999986
No 410
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=50.81 E-value=2.6e+02 Score=32.52 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 037169 604 VIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE 641 (860)
Q Consensus 604 ~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~ 641 (860)
.|...++-.+.|+-.+.+..+++.+.+..|..++..+.
T Consensus 279 ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~air 316 (421)
T KOG2685|consen 279 RIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIR 316 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34444455555555555555555555555665555554
No 411
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=50.70 E-value=4.5e+02 Score=30.34 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=16.6
Q ss_pred EecCCCCCCHHhHHHHHHHHHHhhccc
Q 037169 545 LQISPSEQDLGETLSSLNFASRVRGVE 571 (860)
Q Consensus 545 ~~VSP~~~~~~ETl~TL~fA~r~r~I~ 571 (860)
++..|....+...-..+.|=.|+..++
T Consensus 196 l~~~p~~~~~~~la~~a~LE~RL~~LE 222 (388)
T PF04912_consen 196 LYYPPEQAKSQQLARAADLEKRLARLE 222 (388)
T ss_pred eecCcccchhhHHHHHHHHHHHHHHHH
Confidence 344566556666666666667776665
No 412
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=50.66 E-value=2.3e+02 Score=26.98 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 037169 666 EICSNVQRKVKEL 678 (860)
Q Consensus 666 e~~~~lq~~~~el 678 (860)
..+.+++.++.++
T Consensus 58 qr~~eLqaki~ea 70 (107)
T PF09304_consen 58 QRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334333333
No 413
>PRK10536 hypothetical protein; Provisional
Probab=50.51 E-value=9.9 Score=41.51 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=18.6
Q ss_pred hHHHhhCCccEEEEeeccCCCCccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
++..+.+ +..||..|++||||||..
T Consensus 67 ~l~al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 67 YLKAIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred HHHHHhc--CCeEEEECCCCCCHHHHH
Confidence 3444444 348999999999999975
No 414
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=50.43 E-value=4.6e+02 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=17.6
Q ss_pred CcEEEEEEeeecccCCCCCcceEEEEEECCEEE
Q 037169 23 GDYLVDLHFAEIVNANGPKGMRVFDVFMQEEKV 55 (860)
Q Consensus 23 G~Y~V~LhFaEi~~~~~~~g~RvFdV~ing~~v 55 (860)
..|.+..+|.+..-- .+|. .|.+.|..|
T Consensus 116 ~~Y~~~a~F~~a~GL--~~Gs---~Vr~~GV~V 143 (370)
T PLN03094 116 RKYQAVFEFPQACGI--CVGT---PVRIRGVTV 143 (370)
T ss_pred ceEEEEEecCCCCCC--CCCC---ceEEcCEEe
Confidence 479999999984432 4444 356666553
No 415
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=50.19 E-value=92 Score=31.92 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037169 627 KNQQEKINELESQLESKTQLCRQLEKQLLQVSE 659 (860)
Q Consensus 627 ~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~ 659 (860)
..+..++..+++++..+.+.+...+.+|..|..
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666655543
No 416
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.16 E-value=6.8e+02 Score=32.29 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=18.4
Q ss_pred ccEEEEeeccCCCCcccc-------ccCCCCCCC
Q 037169 323 YNVCIFAYGQTGTGKTFT-------MEGTQQNRG 349 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyT-------M~G~~~~~G 349 (860)
.++..+-+|+||||||.- +||.....|
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~ 57 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG 57 (908)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc
Confidence 344556789999999864 467655444
No 417
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=7.3 Score=43.65 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=13.8
Q ss_pred cEEEEeeccCCCCcccc
Q 037169 324 NVCIFAYGQTGTGKTFT 340 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyT 340 (860)
.+-|+..||||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34578899999999974
No 418
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.09 E-value=4.2e+02 Score=29.81 Aligned_cols=144 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH---
Q 037169 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELES-------QLESKTQLCRQLEKQL--- 654 (860)
Q Consensus 585 ~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~-------~l~~~~~~~~~le~~l--- 654 (860)
.+++..++.........+..+...+-+++-+..++............+...+.. ++......-..|..+|
T Consensus 142 eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y 221 (309)
T PF09728_consen 142 EKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLY 221 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037169 655 ----LQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKL 730 (860)
Q Consensus 655 ----~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl 730 (860)
.++...+....++...+..++..+.+++..+..+... |..+.+....-+-.+..+.. .+..++..+..++
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~--~k~k~e~~n~~l~~m~eer~----~~~~~~~~~~~k~ 295 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT--WKSKWEKSNKALIEMAEERQ----KLEKELEKLKKKI 295 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHH
Q 037169 731 RKKE 734 (860)
Q Consensus 731 ~~Qe 734 (860)
...+
T Consensus 296 ~kLe 299 (309)
T PF09728_consen 296 EKLE 299 (309)
T ss_pred HHHH
No 419
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=72 Score=35.04 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcccc
Q 037169 326 CIFAYGQTGTGKTFT 340 (860)
Q Consensus 326 ~IfaYGqTGSGKTyT 340 (860)
.++.||+.|+|||..
T Consensus 207 GvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLM 221 (424)
T ss_pred ceEeeCCCCCcHHHH
Confidence 478999999999853
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.89 E-value=2.5e+02 Score=35.55 Aligned_cols=7 Identities=43% Similarity=0.843 Sum_probs=2.9
Q ss_pred CCCccee
Q 037169 536 GGDSKTL 542 (860)
Q Consensus 536 gGnskT~ 542 (860)
||.+-|+
T Consensus 761 GG~G~t~ 767 (771)
T TIGR01069 761 GGSGVTI 767 (771)
T ss_pred CCceEEE
Confidence 4444443
No 421
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.88 E-value=6e+02 Score=31.62 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 037169 715 HSGMLQQKIAELEEKLRKKEEYATAYCFREM 745 (860)
Q Consensus 715 ~~~~lq~qi~eLe~kl~~Qeeq~~~~~~~~~ 745 (860)
....|++.+..|+.++.+++.-.+...-.++
T Consensus 276 tv~~LqeE~e~Lqskl~~~~~l~~~~~~LEL 306 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLEKLQSTLLGLEL 306 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3566788888888888888766655544443
No 422
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=49.82 E-value=8.5 Score=47.54 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=21.4
Q ss_pred chhhHHHhhC-----CccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLD-----GYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~-----G~N~~IfaYGqTGSGKTyTM~ 342 (860)
+..++..+.. |.+..++.. +||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 5666777665 445555444 89999999995
No 423
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.47 E-value=4.4e+02 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=10.0
Q ss_pred HhhhhHHHHHHHHHHhc
Q 037169 498 NINRSLSALGDVISSLA 514 (860)
Q Consensus 498 ~INkSL~aLg~vI~aL~ 514 (860)
.+=+|=..+..|+..+.
T Consensus 71 e~L~Sr~~~~~v~~~l~ 87 (362)
T TIGR01010 71 EYMRSRDMLAALEKELP 87 (362)
T ss_pred HHHhhHHHHHHHHhcCC
Confidence 34455566666766653
No 424
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=49.39 E-value=6.6 Score=46.10 Aligned_cols=19 Identities=42% Similarity=0.901 Sum_probs=15.4
Q ss_pred ccEEEEeeccCCCCcccccc
Q 037169 323 YNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~ 342 (860)
||. +|-||++|+||||.+.
T Consensus 141 ~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 141 FNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred Cce-EEEEcCCCCCHHHHHH
Confidence 454 6789999999999873
No 425
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.11 E-value=9.9 Score=41.86 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=23.8
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 45666 566677789999999999999887
No 426
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.07 E-value=6e+02 Score=31.81 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037169 717 GMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qe 734 (860)
+.|+.++..|++...+++
T Consensus 247 E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 247 EDLRGELDQLRRSSLEKE 264 (916)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 455555555654443333
No 427
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.74 E-value=74 Score=36.04 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037169 198 QALEKQAAKLKDVASLYERDKR 219 (860)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~ 219 (860)
..+..|...++++...+...+.
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666667777776666543
No 428
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.51 E-value=9.4 Score=44.93 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=20.9
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..+++|.|+.+ .++||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 46778899999765 559999999765
No 429
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=48.49 E-value=7.5 Score=42.17 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=23.1
Q ss_pred EEeccchhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 307 DVFADASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 307 dVf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
++|..+..++..+-.|.| ++-||++|+||||-..
T Consensus 90 ~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~ 123 (254)
T COG1484 90 KALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAI 123 (254)
T ss_pred HHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHH
Confidence 344555556655554444 4679999999999774
No 430
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.33 E-value=1.1e+02 Score=36.71 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037169 224 AMNELERKILIWKEEHSQL 242 (860)
Q Consensus 224 ~~~~~~~~~~~~~~e~~~l 242 (860)
.+.++++++..++.+...+
T Consensus 153 ~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 153 RIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444333
No 431
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.05 E-value=11 Score=44.36 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.1
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 577889999985 55579999999864
No 432
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.99 E-value=3.2e+02 Score=27.91 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHhhh
Q 037169 147 CEKRIKELKIQCQLKTD-ECYEAWMSLTAANDQLEKVRMGL 186 (860)
Q Consensus 147 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l 186 (860)
+...+.+|+.++...++ +..++....+.+..+++.++.+|
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443332 33344444455555555555544
No 433
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=47.92 E-value=3e+02 Score=27.79 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 037169 141 MKSMAKCEKRIKELKIQCQLKTDECYEAWM 170 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (860)
.+.|+++...+.-|+..-......+.++..
T Consensus 66 ~kele~~~~qv~~Lr~~e~~le~~~~~a~~ 95 (152)
T PF07321_consen 66 LKELEKWQQQVASLREREAELEQQLAEAEE 95 (152)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444333333333333333
No 434
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=47.88 E-value=1.2e+02 Score=38.81 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
++++-.|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57889999999999975
No 435
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.67 E-value=10 Score=41.63 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=20.9
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.-+++..+.. +--++-+|++|||||-++
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 3456666654 556789999999999876
No 436
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.53 E-value=3.6e+02 Score=28.30 Aligned_cols=22 Identities=36% Similarity=0.297 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037169 636 LESQLESKTQLCRQLEKQLLQV 657 (860)
Q Consensus 636 le~~l~~~~~~~~~le~~l~~l 657 (860)
++.++......+.++..+..++
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l 117 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 437
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=47.46 E-value=5.2e+02 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 697 KVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 697 ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
-+.+++.+..- ....+.....+.+++..+.++-.+.|++|
T Consensus 351 LL~Ev~RRr~~-~~k~~~i~~~~~eeL~~l~eeE~~~Re~F 390 (412)
T PF04108_consen 351 LLLEVERRRAV-RDKMKKIIREANEELDKLREEEQRRREAF 390 (412)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433332 33344455667777888888888888888
No 438
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.43 E-value=2.3e+02 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 037169 634 NELESQLESKTQLCRQLEKQLLQVSEGMKGKEEIC 668 (860)
Q Consensus 634 ~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~ 668 (860)
.+++..+........+|..+|++...+....+..+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444444444555555555443333333333
No 439
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.35 E-value=1.1e+02 Score=29.97 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=14.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 037169 711 EFEVHSGMLQQKIAELEEKLRKKEEYA 737 (860)
Q Consensus 711 ~~e~~~~~lq~qi~eLe~kl~~Qeeq~ 737 (860)
++|.+...|++++..|.+++-+....+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556665555555444444
No 440
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=47.33 E-value=2.8e+02 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037169 691 VTALHHKVRELENRLKARTQEFE 713 (860)
Q Consensus 691 ~~~le~ki~~lE~kl~~~~~~~e 713 (860)
+..+.++++.++..++.+.+.+.
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~ 118 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQ 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444333
No 441
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=47.28 E-value=12 Score=45.56 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=22.0
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..++..+++|.|+ ++..|||||||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 3578889999985 55569999999975
No 442
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.92 E-value=2.5e+02 Score=33.47 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.5
Q ss_pred cccCCCCcch
Q 037169 519 HIPYRNSKLT 528 (860)
Q Consensus 519 hVPYRdSKLT 528 (860)
-++|=++.-|
T Consensus 229 tv~~~e~~~~ 238 (508)
T KOG3091|consen 229 TVRYAEGTST 238 (508)
T ss_pred ccccCCCccc
Confidence 4454444433
No 443
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=46.87 E-value=8.9 Score=42.78 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.9
Q ss_pred EeeccCCCCcccccc
Q 037169 328 FAYGQTGTGKTFTME 342 (860)
Q Consensus 328 faYGqTGSGKTyTM~ 342 (860)
..||+|||||++-+-
T Consensus 91 ~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 91 VVYGPTGSGKSQLLR 105 (369)
T ss_pred EEECCCCCCHHHHHH
Confidence 459999999999874
No 444
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.79 E-value=3.5e+02 Score=28.08 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=4.8
Q ss_pred HHHHHHHhhhhhh
Q 037169 177 DQLEKVRMGLDNK 189 (860)
Q Consensus 177 ~~l~~~~~~l~~~ 189 (860)
.+|+...+..+.+
T Consensus 88 eQLEq~~~~N~~L 100 (182)
T PF15035_consen 88 EQLEQARKANEAL 100 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 445
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.66 E-value=4.4e+02 Score=29.11 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037169 667 ICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 667 ~~~~lq~~~~ele~~l~~~ 685 (860)
+-..+.++-..+|.+|+++
T Consensus 219 vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 219 VRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 446
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.62 E-value=7.9e+02 Score=32.01 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=17.9
Q ss_pred EeeccCCCCcccccc----CCCCCCCchhhH
Q 037169 328 FAYGQTGTGKTFTME----GTQQNRGVNYRT 354 (860)
Q Consensus 328 faYGqTGSGKTyTM~----G~~~~~GIipRa 354 (860)
|-.||.||||+.... |-...|-++-|+
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRa 76 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRA 76 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCChhhccch
Confidence 567999999998764 233344455555
No 447
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=46.59 E-value=7.2e+02 Score=31.56 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=16.6
Q ss_pred HHHHHHHHHH-HHHHHhhhhccccCCCCCCC
Q 037169 722 KIAELEEKLR-KKEEYATAYCFREMPVTTPY 751 (860)
Q Consensus 722 qi~eLe~kl~-~Qeeq~~~~~~~~~~~~~p~ 751 (860)
++.+++.++. +.+.++.-.++..+..++|-
T Consensus 1024 eiee~eaeIiQekE~el~e~efka~d~Sd~r 1054 (1424)
T KOG4572|consen 1024 EIEELEAEIIQEKEGELIEDEFKALDESDPR 1054 (1424)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhccccCcc
Confidence 3334444433 34456666777766666664
No 448
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=46.52 E-value=12 Score=44.10 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=20.7
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
+..++..+..|.|..+ ||++|+||||..
T Consensus 184 le~l~~~L~~~~~iil--~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNIIL--QGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence 4456666666776654 999999999864
No 449
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.48 E-value=4.4e+02 Score=33.08 Aligned_cols=14 Identities=7% Similarity=0.218 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 037169 606 QKLEENFQNLEVKA 619 (860)
Q Consensus 606 ~~le~~~~~l~~~~ 619 (860)
..+++++..++.++
T Consensus 270 ~fL~~qL~~l~~~L 283 (726)
T PRK09841 270 EFLQRQLPEVRSEL 283 (726)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 450
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.41 E-value=4.5e+02 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 037169 698 VRELENRLKARTQEFEVHSGMLQQKIAELEEKLR 731 (860)
Q Consensus 698 i~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~ 731 (860)
.+++|.++..+...+- +.+++++..|+++..
T Consensus 103 k~e~E~~~~lLke~l~---seleeKkrkieeeR~ 133 (291)
T KOG4466|consen 103 KKEYESKKKLLKENLI---SELEEKKRKIEEERL 133 (291)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 3455555555544333 445555555544433
No 451
>PF05729 NACHT: NACHT domain
Probab=46.32 E-value=9.4 Score=37.00 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=14.1
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999977
No 452
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.87 E-value=6.3e+02 Score=30.66 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=12.0
Q ss_pred EeeccCCCCccccc
Q 037169 328 FAYGQTGTGKTFTM 341 (860)
Q Consensus 328 faYGqTGSGKTyTM 341 (860)
+-+|+||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 46899999999776
No 453
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.87 E-value=8.1e+02 Score=31.92 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=5.4
Q ss_pred hHHHHHHHhhh
Q 037169 421 IKEVWDVLHIG 431 (860)
Q Consensus 421 ~~e~~~ll~~g 431 (860)
+..|-.++..|
T Consensus 76 ak~VgeyIK~G 86 (1072)
T KOG0979|consen 76 AKKVGEYIKRG 86 (1072)
T ss_pred hhHHHHHHhcC
Confidence 34455555544
No 454
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.71 E-value=8.9 Score=44.77 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=13.9
Q ss_pred EEEeeccCCCCcccccc
Q 037169 326 CIFAYGQTGTGKTFTME 342 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM~ 342 (860)
+|+-.|+||+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55566999999999973
No 455
>PRK11519 tyrosine kinase; Provisional
Probab=45.68 E-value=3.7e+02 Score=33.75 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=7.8
Q ss_pred CCCeEEEEEeC
Q 037169 266 LGNIRVFCRCR 276 (860)
Q Consensus 266 ~gnIrV~~RvR 276 (860)
.+|+||+=+-.
T Consensus 404 ~~~~rIid~A~ 414 (719)
T PRK11519 404 VGDVRIVDPAI 414 (719)
T ss_pred CCCeEEEecCC
Confidence 38999986543
No 456
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=45.50 E-value=2.5e+02 Score=25.99 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=11.3
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHH
Q 037169 660 GMKGKEEICSNVQRKVKELENKLK 683 (860)
Q Consensus 660 ~~~~~ee~~~~lq~~~~ele~~l~ 683 (860)
.....++....+-+..++||.+++
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444455555554443
No 457
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.47 E-value=1.4e+02 Score=33.82 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 202 KQAAKLKDVASLYERDKRLWIIAMNELERKILIWKE 237 (860)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (860)
..++....|..-+...+..|...+..+..++..+-.
T Consensus 277 ~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 277 RKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHH
Confidence 344455667777777888888888888777776643
No 458
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=45.44 E-value=9.3 Score=40.68 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.2
Q ss_pred cEEEEeeccCCCCccccccCC
Q 037169 324 NVCIFAYGQTGTGKTFTMEGT 344 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM~G~ 344 (860)
...++-||++|+|||++.-+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 356899999999999987543
No 459
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=45.43 E-value=62 Score=31.89 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 037169 141 MKSMAKCEKRIKELKIQCQLKT 162 (860)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (860)
+..|.+..+.|+.|-+.+-.-.
T Consensus 62 aa~i~~~akqId~LIdsLP~~~ 83 (139)
T KOG1510|consen 62 AADIAKKAKQIDTLIDSLPGEE 83 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 6778888888888877665443
No 460
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=45.17 E-value=14 Score=43.17 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=15.4
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56889999999999987
No 461
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.09 E-value=4.1e+02 Score=33.77 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
-.+.-.|+.|+|||..|
T Consensus 323 ~~liItGpNg~GKSTlL 339 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTL 339 (771)
T ss_pred eEEEEECCCCCCchHHH
Confidence 46777899999999987
No 462
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=45.08 E-value=9.6 Score=38.24 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.9
Q ss_pred cEEEEeeccCCCCccccc
Q 037169 324 NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 324 N~~IfaYGqTGSGKTyTM 341 (860)
++..+-||++|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356678999999999977
No 463
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=45.05 E-value=5.5e+02 Score=29.75 Aligned_cols=33 Identities=9% Similarity=0.333 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 206 KLKDVASLYERDKRLWIIAMNELERKILIWKEE 238 (860)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 238 (860)
+..-+++-+|...+.-+..+..||+++.+....
T Consensus 81 Q~~rIkq~FEkkNqksahtiaqlqkkL~~y~~r 113 (455)
T KOG3850|consen 81 QVARIKQVFEKKNQKSAHTIAQLQKKLEQYHRR 113 (455)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334556667777777788888888888877544
No 464
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=44.94 E-value=12 Score=46.06 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=20.7
Q ss_pred hhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 314 PLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 314 plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
..+..++.|.+ |++.+|||||||.+.
T Consensus 35 ~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 35 ECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 35667788987 577789999999874
No 465
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.92 E-value=5.6e+02 Score=31.92 Aligned_cols=141 Identities=17% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcc---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGN---------------VQLCKNQQEKINELESQLESKTQL 646 (860)
Q Consensus 582 ~~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~---------------~~~~~~~~~k~~ele~~l~~~~~~ 646 (860)
..+..+...++.++.+.......+..+..+++.|-..+.+. +...+.++.++.+|+.+-..+-+.
T Consensus 103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek 182 (660)
T KOG4302|consen 103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK 182 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037169 647 CRQLEKQLLQVSEGMK-GKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAE 725 (860)
Q Consensus 647 ~~~le~~l~~l~~~~~-~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~e 725 (860)
...+..++..+...+. .......++...+.........-.-.+.+..|...++.++..+.+.-+... .+..++.+
T Consensus 183 v~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~----~l~~~~~~ 258 (660)
T KOG4302|consen 183 VLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQ----DLRTKLLE 258 (660)
T ss_pred HHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q ss_pred H
Q 037169 726 L 726 (860)
Q Consensus 726 L 726 (860)
|
T Consensus 259 L 259 (660)
T KOG4302|consen 259 L 259 (660)
T ss_pred H
No 466
>PRK00131 aroK shikimate kinase; Reviewed
Probab=44.88 E-value=10 Score=37.34 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCccccc
Q 037169 325 VCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 325 ~~IfaYGqTGSGKTyTM 341 (860)
.+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999864
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=44.85 E-value=11 Score=41.94 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=20.8
Q ss_pred chhhHHHhhCCccEEEEeeccCCCCcccccc
Q 037169 312 ASPLVTSVLDGYNVCIFAYGQTGTGKTFTME 342 (860)
Q Consensus 312 v~plV~~~l~G~N~~IfaYGqTGSGKTyTM~ 342 (860)
+.+++..++.+. ..|.-.|+||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345566666543 456678999999999763
No 468
>PF15294 Leu_zip: Leucine zipper
Probab=44.81 E-value=2.5e+02 Score=31.11 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037169 643 KTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN-------VTALHHKVRELENRLKARTQEFEVH 715 (860)
Q Consensus 643 ~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~-------~~~le~ki~~lE~kl~~~~~~~e~~ 715 (860)
+.+++.+|..+...++.++...+..|....++-..++..|+++.-... ...-...+..+|.++...+.+++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544444444444443322000 0012334556666666666666655
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 037169 716 SGMLQQKIAELEEKLRKKE 734 (860)
Q Consensus 716 ~~~lq~qi~eLe~kl~~Qe 734 (860)
..........|+..|..-.
T Consensus 210 ~~d~~~~~k~L~e~L~~~K 228 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCK 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555556666666665433
No 469
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=44.81 E-value=8.9 Score=36.80 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
+.-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467999999999976
No 470
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=44.65 E-value=4.1e+02 Score=30.26 Aligned_cols=127 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH-------HHHHH
Q 037169 142 KSMAKCEKRIKELKIQCQLKTD----ECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAA-------KLKDV 210 (860)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~ 210 (860)
+.-+|++..+++-+.++....- ||..+.-...+.-.+-+.+.-.|.+-......+...+..+.+ +++.+
T Consensus 167 ~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~ 246 (561)
T KOG1103|consen 167 IAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKL 246 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhHHhhhhhccCCCeEE
Q 037169 211 ASLYERDKRLWIIAMNELERKILIWKEEHSQLAREAHECASSVPQLNKMVSTIQVLGNIRV 271 (860)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~gnIrV 271 (860)
-.++......+++.+..++.+-+.+|.|...|.+-+.+......-++.-. |..|.|.|
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNe---qLk~pvtv 304 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNE---QLKGPVTV 304 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccc---cccCceee
No 471
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=44.50 E-value=7.5e+02 Score=31.19 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=15.6
Q ss_pred ccEEEEeeccCCCCccccccCC
Q 037169 323 YNVCIFAYGQTGTGKTFTMEGT 344 (860)
Q Consensus 323 ~N~~IfaYGqTGSGKTyTM~G~ 344 (860)
.-.+-...|+.|||=.|.|.+.
T Consensus 281 VP~ISVViGeggSGGAlA~g~a 302 (762)
T PLN03229 281 VPIVSIVIGEGGSGGALAIGCA 302 (762)
T ss_pred CCEEEEEeCCcchHHHHHhhcC
Confidence 5555566788888888877543
No 472
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.49 E-value=3.8e+02 Score=27.78 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 037169 595 KQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRK 674 (860)
Q Consensus 595 k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~ 674 (860)
+..+...-..+-.+++.+..++..+..........++.-..+...+....+.+..++...+++.+-+.+.....+++.+-
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037169 675 VKELENKLKEHDQSENVTALHHKVRELENRLKARTQE 711 (860)
Q Consensus 675 ~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~ 711 (860)
+... ++.+.+.-....++++-+-++.-....+.+
T Consensus 151 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (189)
T TIGR02132 151 IQKQ---IKTQGEQLQAQLLEKQEALAAKLKAEAKEE 184 (189)
T ss_pred HHHH---HhhhHHHHHHHHHHHHHHHHHHhhhHHHhh
No 473
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=44.14 E-value=9.6 Score=37.07 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
|+-.|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998864
No 474
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.14 E-value=12 Score=45.42 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=0.0
Q ss_pred hHHHhhCCccEEEEeeccCCCCccccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
No 475
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=44.00 E-value=10 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=0.0
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
..+-+|++|||||..|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
No 476
>PLN02939 transferase, transferring glycosyl groups
Probab=43.94 E-value=8.7e+02 Score=31.74 Aligned_cols=143 Identities=24% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hH
Q 037169 587 VKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKG-KE 665 (860)
Q Consensus 587 lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~-~e 665 (860)
+-.++.-++.|.....+-++.|..++... .+..+.+.-++.+-..+...+.+||..+...++..-. .-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEV-----------AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSP 292 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHH
Q 037169 666 EICSNVQRKVKELENKLKEHDQSENVT--------ALHHKVRELENRLKARTQ--EFEVHSGMLQQKIAELEEKLRKKEE 735 (860)
Q Consensus 666 e~~~~lq~~~~ele~~l~~~~q~~~~~--------~le~ki~~lE~kl~~~~~--~~e~~~~~lq~qi~eLe~kl~~Qee 735 (860)
-..+-+-+++..|+..|.....+.... .|++++.++|.-+++..- ..-...+.+|++++-+++.+++--.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (977)
T PLN02939 293 LQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH 372 (977)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred Hhhhh
Q 037169 736 YATAY 740 (860)
Q Consensus 736 q~~~~ 740 (860)
++.++
T Consensus 373 ~~~~~ 377 (977)
T PLN02939 373 EIHSY 377 (977)
T ss_pred HHHHH
No 477
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=43.91 E-value=15 Score=45.45 Aligned_cols=22 Identities=55% Similarity=0.747 Sum_probs=0.0
Q ss_pred hHHHhhCCccEEEEeeccCCCCccc
Q 037169 315 LVTSVLDGYNVCIFAYGQTGTGKTF 339 (860)
Q Consensus 315 lV~~~l~G~N~~IfaYGqTGSGKTy 339 (860)
+++.+| |.|+.|.+ |||+|||+
T Consensus 70 ivq~AL-gkNtii~l--PTG~GKTf 91 (746)
T KOG0354|consen 70 LVQPAL-GKNTIIAL--PTGSGKTF 91 (746)
T ss_pred HhHHhh-cCCeEEEe--ecCCCccc
No 478
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=43.68 E-value=8.9e+02 Score=31.80 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhhcccccccccccChHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH----
Q 037169 566 RVRGVELSPARKQIDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLE---- 641 (860)
Q Consensus 566 r~r~I~~~p~~~~~~~~~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~---- 641 (860)
|=.++........+|.+++++|.++|..+...+ .+..+....++++.|+.....+....+.+..++.+.-..++
T Consensus 1144 RnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL--~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~Lrn 1221 (1439)
T PF12252_consen 1144 RNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKL--YDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRN 1221 (1439)
T ss_pred HhHHHhhccCCCcccHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHH
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037169 642 -------------------------------SKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSEN 690 (860)
Q Consensus 642 -------------------------------~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~ 690 (860)
....++.....-+.+.. .+.-++...+.|+-+..|++.-+.++.+..
T Consensus 1222 ErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~ 1299 (1439)
T PF12252_consen 1222 ERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTFEEQEKEIQQNLQLLDKLEKTLDDSDT 1299 (1439)
T ss_pred HHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 037169 691 VTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKLRKK 733 (860)
Q Consensus 691 ~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl~~Q 733 (860)
.+.+...+-++..-+-+.+..|= .+-+||-+.+.|-.+|++.
T Consensus 1300 a~Kqk~di~kl~~~lv~kQKAYP-~M~QlQ~ksealI~qLRel 1341 (1439)
T PF12252_consen 1300 AQKQKEDIVKLNDFLVEKQKAYP-AMVQLQFKSEALIIQLREL 1341 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhhhch-HHHHHhhhhHHHHHHHHHH
No 479
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.54 E-value=95 Score=26.91 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 037169 628 NQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELE 679 (860)
Q Consensus 628 ~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele 679 (860)
.+++.+.+||.++.-....+.+|...+..........+..+..+.+++..++
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 480
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.50 E-value=3.4e+02 Score=30.30 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 142 KSMAKCEKRIKELKIQCQLKTDECYE-AWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVASLYERDKRL 220 (860)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (860)
.+++.|+.+..+.-.+++.+..+..+ ..+.+.+..++|..+..+|.. ..+.++..+...+++
T Consensus 319 s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~-----------------kf~~lkr~h~eEk~k 381 (406)
T KOG3859|consen 319 SLQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHE-----------------KFDRLKRLHQEEKKK 381 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037169 221 WIIAMNELERKILIWKEEHSQLA 243 (860)
Q Consensus 221 ~~~~~~~~~~~~~~~~~e~~~l~ 243 (860)
+......|++....+......+.
T Consensus 382 le~~rr~Leee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 382 LEEKRKQLEEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 481
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=43.34 E-value=13 Score=38.31 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=0.0
Q ss_pred HHHhhCCc---cEEEEeeccCCCCcc
Q 037169 316 VTSVLDGY---NVCIFAYGQTGTGKT 338 (860)
Q Consensus 316 V~~~l~G~---N~~IfaYGqTGSGKT 338 (860)
++.++.|- ...+.-||++|||||
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT 26 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKT 26 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHH
No 482
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.29 E-value=2.2e+02 Score=26.89 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037169 136 DKLMRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLDQALEKQAAKLKDVAS 212 (860)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (860)
.|+ ..+-+|+......|+.-+-.-+....++...|......|.++..|++.+.|.|..|.+.++.--.++....+
T Consensus 1 Qkl--a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 1 QKL--AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred ChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.16 E-value=14 Score=42.84 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=0.0
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCccccc
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
.++...+-.+.-..++-||++|+|||+..
T Consensus 25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 25 KPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred hHHHHHHHcCCCceEEEECCCCCCHHHHH
No 484
>PF13173 AAA_14: AAA domain
Probab=43.09 E-value=11 Score=36.04 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=0.0
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
No 485
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.93 E-value=10 Score=41.39 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=0.0
Q ss_pred EEeeccCCCCccccc
Q 037169 327 IFAYGQTGTGKTFTM 341 (860)
Q Consensus 327 IfaYGqTGSGKTyTM 341 (860)
+.-.|++|||||+||
T Consensus 30 ~vliGpSGsGKTTtL 44 (309)
T COG1125 30 LVLIGPSGSGKTTTL 44 (309)
T ss_pred EEEECCCCCcHHHHH
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.89 E-value=10 Score=44.97 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=0.0
Q ss_pred EEEeeccCCCCccccc
Q 037169 326 CIFAYGQTGTGKTFTM 341 (860)
Q Consensus 326 ~IfaYGqTGSGKTyTM 341 (860)
+|.-.|+||+|||+|+
T Consensus 258 Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 258 VFALMGPTGVGKTTTT 273 (484)
T ss_pred EEEEECCCCccHHHHH
No 487
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=42.85 E-value=4.1e+02 Score=27.62 Aligned_cols=140 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 037169 585 QKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGK 664 (860)
Q Consensus 585 ~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ 664 (860)
......-.-+..+....+.....+..+..++..++...+..|.-+++++..+..-+..-.......-.+-..+.......
T Consensus 32 ~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~ 111 (178)
T PF14073_consen 32 RETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQD 111 (178)
T ss_pred HHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037169 665 EEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHSGMLQQKIAELEEKL 730 (860)
Q Consensus 665 ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~~~lq~qi~eLe~kl 730 (860)
........+++..||.+...+....+. .+.+++.||.++.+-.. .+..+|.+=..|+..+
T Consensus 112 ~~~~~~klekLe~LE~E~~rLt~~Q~~--ae~Ki~~LE~KL~eEeh----qRKlvQdkAaqLQt~l 171 (178)
T PF14073_consen 112 QSELQAKLEKLEKLEKEYLRLTATQSL--AETKIKELEEKLQEEEH----QRKLVQDKAAQLQTGL 171 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
No 488
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=42.84 E-value=13 Score=45.63 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=0.0
Q ss_pred HHHhhCCccEEEEeeccCCCCccccc
Q 037169 316 VTSVLDGYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 316 V~~~l~G~N~~IfaYGqTGSGKTyTM 341 (860)
|..++.....++ -.|++|||||||+
T Consensus 166 v~~~l~~~~~~l-I~GpPGTGKT~t~ 190 (637)
T TIGR00376 166 VSFALSSKDLFL-IHGPPGTGKTRTL 190 (637)
T ss_pred HHHHhcCCCeEE-EEcCCCCCHHHHH
No 489
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=42.78 E-value=11 Score=37.92 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=0.0
Q ss_pred EEeeccCCCCccc
Q 037169 327 IFAYGQTGTGKTF 339 (860)
Q Consensus 327 IfaYGqTGSGKTy 339 (860)
|+.+|+.|||||+
T Consensus 2 i~i~G~pGsGKst 14 (183)
T TIGR01359 2 VFVLGGPGSGKGT 14 (183)
T ss_pred EEEECCCCCCHHH
No 490
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=42.77 E-value=5.9e+02 Score=29.47 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 037169 627 KNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLK 706 (860)
Q Consensus 627 ~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~ 706 (860)
...++-...|..-++....+..+|+.+...+...+++..+.++....+...-+.++....-.+..-.|+.| ..+..+..
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-aaLrkerd 359 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-AALRKERD 359 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccCC---CCCCCccccccccccccCCCCccccccCccccccccc
Q 037169 707 ARTQEFEVHSGMLQQKIAELEEKLRKKEEYATAYCFREMP---VTTPYNATVSRVETTIDDMDPPSLRILNHNGSNRAMN 783 (860)
Q Consensus 707 ~~~~~~e~~~~~lq~qi~eLe~kl~~Qeeq~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (860)
.+..+++.....+++....+.-+-.-..-=+-+..-|.+| ..-|.-....-....+.++-.+|+-|--.-..|-..+
T Consensus 360 ~L~keLeekkreleql~~q~~v~~saLdtCikaKsq~~~p~~r~~~p~pnp~pidp~~leefkrrilesqr~~~~~~~~~ 439 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQPMTPGPRPVGPVPNPPPIDPASLEEFKRRILESQRPPVGNPAAP 439 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCC
Q ss_pred cc
Q 037169 784 TE 785 (860)
Q Consensus 784 ~~ 785 (860)
..
T Consensus 440 ~s 441 (442)
T PF06637_consen 440 SS 441 (442)
T ss_pred CC
No 491
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=42.49 E-value=44 Score=37.61 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037169 579 IDISKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVS 658 (860)
Q Consensus 579 ~~~~~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~ 658 (860)
....++..+++.|..+..........+..+...+.+|...+........+++..+..+...+...+..+..+...+..+.
T Consensus 25 ~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS 104 (326)
T PF04582_consen 25 TSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLS 104 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037169 659 EGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQ 710 (860)
Q Consensus 659 ~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~ 710 (860)
.....-...+..++..+..++-.+..+...-+. +.-.+..||.+++.++.
T Consensus 105 ~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt--~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 105 STLSDHSSSISDLQSSVSALSTDVSNLKSDVST--QALNITDLESRVKALES 154 (326)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh--hcchHhhHHHHHHHHhc
No 492
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=42.49 E-value=16 Score=38.38 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=0.0
Q ss_pred hhHHHhhCC---ccEEEEeeccCCCCccc
Q 037169 314 PLVTSVLDG---YNVCIFAYGQTGTGKTF 339 (860)
Q Consensus 314 plV~~~l~G---~N~~IfaYGqTGSGKTy 339 (860)
|-++.++.| ...++.-+|++|||||.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~ 34 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQ 34 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHH
No 493
>PF13514 AAA_27: AAA domain
Probab=42.44 E-value=9.5e+02 Score=31.78 Aligned_cols=153 Identities=22% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHHHHHH----------
Q 037169 582 SKLQKVKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKG-----------NVQLCKNQQEKINELESQL---------- 640 (860)
Q Consensus 582 ~~~~~lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~-----------~~~~~~~~~~k~~ele~~l---------- 640 (860)
..+.++...++.++.++......+..++.++..|-..... .......+..++..++.++
T Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 880 (1111)
T PF13514_consen 801 EERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLE 880 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHH
Q ss_pred HHHHHH----HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037169 641 ESKTQL----CRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEHDQSENVTALHHKVRELENRLKARTQEFEVHS 716 (860)
Q Consensus 641 ~~~~~~----~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~~q~~~~~~le~ki~~lE~kl~~~~~~~e~~~ 716 (860)
+-.... ...++..+..+...+...+.....+...+.+++..+...........+..+.+.++.++......+- ..
T Consensus 881 ~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~-~~ 959 (1111)
T PF13514_consen 881 ELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWA-AL 959 (1111)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037169 717 GMLQQKIAELEEKLRKKEE 735 (860)
Q Consensus 717 ~~lq~qi~eLe~kl~~Qee 735 (860)
.....-+....++.++...
T Consensus 960 ~la~~lL~~a~~~~r~~~~ 978 (1111)
T PF13514_consen 960 RLAAELLEEAIERYREERQ 978 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhh
No 494
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.24 E-value=1.2e+02 Score=25.53 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037169 144 MAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCF 191 (860)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 191 (860)
|+++...+..|..++.....+...++.....+..+-.|.-.-|++...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
No 495
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=42.10 E-value=2.8e+02 Score=25.56 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 037169 587 VKMMLEKTKQEVGSKDDVIQKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEE 666 (860)
Q Consensus 587 lk~~l~~~k~e~~~~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee 666 (860)
|..+|..+..........+.....++..++............-.++..++....+.+......|..++..-.+......+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 037169 667 ICSNVQRKVKELENKL 682 (860)
Q Consensus 667 ~~~~lq~~~~ele~~l 682 (860)
.-..+...+..+|..+
T Consensus 81 ~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHHHHHHHHhhccC
No 496
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=42.06 E-value=15 Score=41.71 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhhHHHhhCCccEEEEeeccCCCCcccc
Q 037169 313 SPLVTSVLDGYNVCIFAYGQTGTGKTFT 340 (860)
Q Consensus 313 ~plV~~~l~G~N~~IfaYGqTGSGKTyT 340 (860)
....+.+.+|.+..+|..++||||||..
T Consensus 3 ~~~~~~~~~~~~~~~~i~apTGsGKT~~ 30 (357)
T TIGR03158 3 VATFEALQSKDADIIFNTAPTGAGKTLA 30 (357)
T ss_pred HHHHHHHHcCCCCEEEEECCCCCCHHHH
No 497
>PRK04406 hypothetical protein; Provisional
Probab=42.06 E-value=91 Score=27.67 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 037169 139 MRMKSMAKCEKRIKELKIQCQLKTDECYEAWMSLTAANDQLEKVRMGLDNKCFQNLCLD 197 (860)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 197 (860)
|..|-++.++.++.+|..++.-..+-+.++-.-+..-+.+|+++...|..+..+..++.
T Consensus 1 ~~~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 1 MTEKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 498
>PRK04195 replication factor C large subunit; Provisional
Probab=42.05 E-value=14 Score=43.86 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=0.0
Q ss_pred chhhHHHhhCCc-cEEEEeeccCCCCccccc
Q 037169 312 ASPLVTSVLDGY-NVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 312 v~plV~~~l~G~-N~~IfaYGqTGSGKTyTM 341 (860)
+..++.....|. .-.++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
No 499
>PRK12705 hypothetical protein; Provisional
Probab=41.98 E-value=7e+02 Score=30.12 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHh
Q 037169 606 QKLEENFQNLEVKAKGNVQLCKNQQEKINELESQLESKTQLCRQLEKQLLQVSEGMKGKEEICSNVQRKVKELENKLKEH 685 (860)
Q Consensus 606 ~~le~~~~~l~~~~~~~~~~~~~~~~k~~ele~~l~~~~~~~~~le~~l~~l~~~~~~~ee~~~~lq~~~~ele~~l~~~ 685 (860)
..........+..+..........+.++...+.+++.+...+...+.++.+....+...+..+..+.++....=+++..+
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~l 138 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGL 138 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred hhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHH
Q 037169 686 DQSENVTALHHKVR-ELENRLKARTQEFEVHSGMLQQK 722 (860)
Q Consensus 686 ~q~~~~~~le~ki~-~lE~kl~~~~~~~e~~~~~lq~q 722 (860)
.++++...+-++++ ++......+-...+.+...-..+
T Consensus 139 t~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~ 176 (508)
T PRK12705 139 TPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAER 176 (508)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=41.98 E-value=12 Score=46.38 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=0.0
Q ss_pred EeccchhhHHHhhC-CccEEEEeeccCCCCccccc
Q 037169 308 VFADASPLVTSVLD-GYNVCIFAYGQTGTGKTFTM 341 (860)
Q Consensus 308 Vf~~v~plV~~~l~-G~N~~IfaYGqTGSGKTyTM 341 (860)
||.-+......++. |.|-||+.-|.+|||||.|.
T Consensus 71 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 71 VFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Done!