BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037173
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 16 HDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEAXXXXXX 74
+DVFLSFRG DTR NF S L+ L + I+TF DD +L G S L IE
Sbjct: 9 YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVV 68
Query: 75 XXXERYASSRWCLDELLKILECKHDYGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGERY 134
E YA+S WCLDEL+ I++ + V+P+FY V+P+HVRW+TG + F + R
Sbjct: 69 VVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE 128
Query: 135 -PEKMQRWGNALTEAANLSGFDSHVIRPESKLIEAIANGV 173
PEK+ +W ALT A LSG S +SKL++ IAN +
Sbjct: 129 DPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 16 HDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFV-DDQLIRGDNISRSLLDTIEAXXXXXX 74
++VFLSFRG DTR+ FT L+ L I TF DD+L++G I +LL I+
Sbjct: 36 YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVP 95
Query: 75 XXXERYASSRWCLDELLKIL-ECKHDYGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGER 133
YA S+WCL EL +I+ + D +I++P+FY VDPS VR +TG + F + +
Sbjct: 96 IISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155
Query: 134 YP-EKMQRWGNALTEAANLSGF 154
+ + +Q W +AL + +L G+
Sbjct: 156 FDGQTIQNWKDALKKVGDLKGW 177
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 2 ASSSSCPPRNAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDDQLIR-GDNISR 60
A +S PP HD+F+S ED D F L + L G + + DD +R GD++ R
Sbjct: 13 ADLTSAPP------HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65
Query: 61 SLLDTIEAXXXXXXXXXERYASSRWCLDELLKILECKHDYGQIVIPVFYRVDPSHVRWKT 120
S+ + + + W EL + + + ++P++++V V +
Sbjct: 66 SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125
Query: 121 GTFGD 125
T D
Sbjct: 126 PTMAD 130
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 236 CFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGN-----ARNVESQLNRL------AR 284
CF G + V + +++G + LQ L ++L D + N+E +RL
Sbjct: 183 CFPGGVHWVSVGKQDKSGLLMKLQN-LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKH 241
Query: 285 KKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLENCWVNQIYRMKELVDVD 344
+ LL+ DDV +S + L S ++++TTRDK V + + K +V V+
Sbjct: 242 PRSLLILDDV-----WDSWV--LKAFDSQCQILLTTRDKSV-----TDSVMGPKYVVPVE 289
Query: 345 A----HKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAM 400
+ K + A E IK G PL + ++G L WE +
Sbjct: 290 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGA-LLRDFPNRWEYYL 348
Query: 401 RKLEIIPHVDILKVLKISYDSLDDS 425
++L+ I K Y++LD++
Sbjct: 349 KQLQNKQFKRIRKSSSYDYEALDEA 373
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 472 LNNQIRMHDLLRDMGREIVRNESIDLPGKRSRLWYHKDIDEVLKKNT------GTEAIKG 525
LN + MH+LL+ MG + + S DL + S + + + VL+++ GTEA+ G
Sbjct: 325 LNQRYEMHELLKQMGIRRLFSTSADL-SELSAMARNLQVSRVLQQSVLEVDERGTEAVSG 383
Query: 526 -----ISLDMN---KVNRKIHM 539
I+ M KVNR H
Sbjct: 384 TLSEIIAYSMPPAIKVNRPFHF 405
>pdb|2CRV|A Chain A, Solution Structure Of C-Terminal Domain Of Mitochondrial
Translational Initiationfactor 2
Length = 120
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 460 LSVLEDKSLITCLNNQIRMHDLLRDMGREIVRNESIDLPGKRSRLWYHKDIDEVLKKNTG 519
+V E K I + +++ L R +++RN + G + L +HKD V+K TG
Sbjct: 19 FTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIK--TG 76
Query: 520 TEAIKGISLDMNKVNRK 536
+ G+SLD KV K
Sbjct: 77 MDC--GLSLDEEKVEFK 91
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 35/208 (16%)
Query: 236 CFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGN-----ARNVESQLNRL------AR 284
CF G + V + +++G + LQ L ++L D + N+E +RL
Sbjct: 177 CFPGGVHWVSVGKQDKSGLLMKLQN-LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKH 235
Query: 285 KKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLENCWVNQIYRMKELVDVD 344
+ LL+ DDV +S + L S ++++TTRDK V + + K +V V+
Sbjct: 236 PRSLLILDDV-----WDSWV--LKAFDSQCQILLTTRDKSV-----TDSVMGPKYVVPVE 283
Query: 345 A----HKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG---RHLCGRSKEVWE 397
+ K + A E IK G PL + ++G R R WE
Sbjct: 284 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR----WE 339
Query: 398 SAMRKLEIIPHVDILKVLKISYDSLDDS 425
+++L+ I K Y++LD++
Sbjct: 340 YYLKQLQNKQFKRIRKSSSYDYEALDEA 367
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 412 LKVLKISYDSLDDSQKNVFLDIACLLEGEHRDEVTSFFDASGFQAKIELSVLEDKSLITC 471
+K+ KI Y ++D Q+ + + C++E EH S S+ E K +
Sbjct: 417 IKLHKIIYRLIEDLQEELSSRLPCIVE-EHPIGEASILAT--------FSITEGKKKVPV 467
Query: 472 LNNQIRMHDLLRDMGREIVRNESIDLPGKRSRLWYHKDIDEVLKKNTGTEAIKGISLDMN 531
+++ + + +++RN + G L +HKD V+K TG + G+SLD
Sbjct: 468 AGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVK--TGMDC--GLSLDEE 523
Query: 532 KVNRKI 537
K+ K+
Sbjct: 524 KIEFKV 529
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,170,434
Number of Sequences: 62578
Number of extensions: 686003
Number of successful extensions: 1444
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 9
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)