Query 037173
Match_columns 617
No_of_seqs 538 out of 3401
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.3E-97 3E-102 878.1 58.9 610 1-615 1-633 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-60 9.8E-65 531.6 28.0 413 189-610 161-636 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-40 7.9E-45 334.9 15.2 263 191-457 1-284 (287)
4 PLN03194 putative disease resi 100.0 2.3E-39 5E-44 290.2 14.7 157 8-178 19-178 (187)
5 smart00255 TIR Toll - interleu 99.8 5.4E-20 1.2E-24 165.7 11.2 134 15-149 1-138 (140)
6 PF01582 TIR: TIR domain; Int 99.8 1.1E-20 2.4E-25 169.9 4.1 129 18-146 1-140 (141)
7 PRK04841 transcriptional regul 99.7 2.7E-14 5.9E-19 168.2 29.1 291 181-493 9-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.6 9.4E-17 2E-21 135.9 2.8 87 18-110 1-87 (102)
9 PRK00411 cdc6 cell division co 99.4 1.2E-10 2.6E-15 123.9 26.5 279 183-472 27-358 (394)
10 COG2909 MalT ATP-dependent tra 99.4 1E-10 2.2E-15 127.0 24.1 288 182-494 15-342 (894)
11 PRK00080 ruvB Holliday junctio 99.3 1.3E-11 2.8E-16 127.3 15.3 257 183-472 22-310 (328)
12 COG3899 Predicted ATPase [Gene 99.3 6.5E-11 1.4E-15 135.3 19.3 301 187-492 1-388 (849)
13 TIGR00635 ruvB Holliday juncti 99.3 9.5E-11 2.1E-15 120.0 18.8 252 186-472 4-289 (305)
14 PF01637 Arch_ATPase: Archaeal 99.3 1E-11 2.2E-16 121.7 10.6 192 188-383 1-233 (234)
15 TIGR02928 orc1/cdc6 family rep 99.3 3.6E-09 7.8E-14 111.3 29.0 279 183-472 12-350 (365)
16 PF05729 NACHT: NACHT domain 99.1 4.3E-10 9.3E-15 103.9 12.5 142 210-353 1-163 (166)
17 TIGR03015 pepcterm_ATPase puta 99.1 5.6E-09 1.2E-13 104.9 19.1 175 209-388 43-242 (269)
18 COG3903 Predicted ATPase [Gene 99.0 2.3E-10 5.1E-15 115.3 5.5 277 208-493 13-317 (414)
19 PRK06893 DNA replication initi 98.9 2.5E-08 5.5E-13 97.2 15.0 154 209-388 39-207 (229)
20 KOG3678 SARM protein (with ste 98.8 1.3E-08 2.9E-13 102.5 9.6 93 12-110 609-710 (832)
21 PRK13342 recombination factor 98.8 5.7E-08 1.2E-12 103.4 14.8 179 184-387 10-199 (413)
22 COG2256 MGS1 ATPase related to 98.8 6.2E-08 1.3E-12 97.4 13.9 197 206-426 45-267 (436)
23 TIGR03420 DnaA_homol_Hda DnaA 98.8 6.7E-08 1.5E-12 94.3 13.8 176 185-388 14-205 (226)
24 PF05496 RuvB_N: Holliday junc 98.8 7.4E-08 1.6E-12 90.6 13.2 179 183-388 21-225 (233)
25 PRK07003 DNA polymerase III su 98.8 5E-07 1.1E-11 99.1 20.3 181 184-383 14-220 (830)
26 PRK00440 rfc replication facto 98.7 4.3E-07 9.4E-12 93.6 18.3 182 184-382 15-201 (319)
27 PTZ00112 origin recognition co 98.7 1.1E-06 2.3E-11 97.0 21.6 238 183-434 752-1030(1164)
28 PRK14961 DNA polymerase III su 98.7 1.4E-06 3.1E-11 91.0 20.9 175 184-382 14-218 (363)
29 PRK12402 replication factor C 98.7 5.3E-07 1.2E-11 93.7 17.3 194 184-383 13-225 (337)
30 PRK07471 DNA polymerase III su 98.7 2.1E-07 4.5E-12 96.5 13.8 196 182-385 15-239 (365)
31 PRK14963 DNA polymerase III su 98.7 1.2E-06 2.7E-11 94.6 20.0 186 184-381 12-214 (504)
32 PRK04195 replication factor C 98.7 1.1E-06 2.3E-11 95.6 19.2 182 182-385 10-203 (482)
33 PLN03025 replication factor C 98.7 1.6E-06 3.4E-11 89.2 19.2 183 183-381 10-197 (319)
34 PRK14960 DNA polymerase III su 98.7 2.1E-06 4.6E-11 93.3 20.6 181 183-382 12-217 (702)
35 PRK12323 DNA polymerase III su 98.6 2E-06 4.3E-11 93.3 19.8 193 183-383 13-224 (700)
36 PRK08903 DnaA regulatory inact 98.6 6.7E-07 1.5E-11 87.3 15.1 175 183-388 15-203 (227)
37 PRK14949 DNA polymerase III su 98.6 1E-06 2.3E-11 98.5 16.7 180 184-382 14-218 (944)
38 PRK08084 DNA replication initi 98.6 1.4E-06 3.1E-11 85.2 15.5 174 186-387 22-212 (235)
39 PRK08727 hypothetical protein; 98.6 1.3E-06 2.8E-11 85.4 14.8 169 185-381 18-201 (233)
40 PF13173 AAA_14: AAA domain 98.6 3E-07 6.4E-12 81.0 9.3 119 210-345 3-127 (128)
41 PF00308 Bac_DnaA: Bacterial d 98.6 1.8E-06 3.9E-11 83.4 15.3 162 208-386 33-210 (219)
42 PTZ00202 tuzin; Provisional 98.5 1.2E-05 2.5E-10 82.9 20.9 191 152-353 220-434 (550)
43 cd00009 AAA The AAA+ (ATPases 98.5 1.2E-06 2.5E-11 78.7 12.5 123 189-324 1-131 (151)
44 PRK14957 DNA polymerase III su 98.5 3.3E-06 7.2E-11 91.5 18.0 182 184-384 14-221 (546)
45 TIGR01242 26Sp45 26S proteasom 98.5 7.8E-07 1.7E-11 93.3 12.5 175 183-378 119-328 (364)
46 PRK05564 DNA polymerase III su 98.5 3.2E-06 6.9E-11 86.7 16.7 176 186-383 4-189 (313)
47 PRK14958 DNA polymerase III su 98.5 7.8E-06 1.7E-10 88.6 20.2 180 184-382 14-218 (509)
48 PRK05642 DNA replication initi 98.5 3.2E-06 7E-11 82.6 15.7 153 210-388 46-212 (234)
49 PRK14962 DNA polymerase III su 98.5 7E-06 1.5E-10 88.1 19.5 186 183-387 11-222 (472)
50 PRK09087 hypothetical protein; 98.5 2.8E-06 6E-11 82.4 15.0 143 209-388 44-199 (226)
51 PRK09112 DNA polymerase III su 98.5 2.5E-06 5.5E-11 88.0 15.0 192 182-385 19-241 (351)
52 PRK14956 DNA polymerase III su 98.5 1.5E-05 3.3E-10 84.3 20.8 186 183-379 15-217 (484)
53 PRK06645 DNA polymerase III su 98.5 5.2E-06 1.1E-10 89.4 17.5 184 183-381 18-226 (507)
54 PRK14964 DNA polymerase III su 98.5 1.3E-05 2.8E-10 85.8 19.8 179 184-381 11-214 (491)
55 PRK07940 DNA polymerase III su 98.5 5.8E-06 1.3E-10 86.6 17.0 172 186-384 5-213 (394)
56 PRK13341 recombination factor 98.5 3.5E-06 7.5E-11 94.6 16.0 170 184-379 26-212 (725)
57 PRK14951 DNA polymerase III su 98.5 2.1E-05 4.6E-10 86.4 21.8 190 184-383 14-224 (618)
58 PF13401 AAA_22: AAA domain; P 98.5 2.2E-06 4.7E-11 75.7 11.7 108 209-322 4-125 (131)
59 PRK08691 DNA polymerase III su 98.4 3.5E-06 7.7E-11 92.4 15.3 190 183-382 13-218 (709)
60 TIGR02397 dnaX_nterm DNA polym 98.4 7.5E-06 1.6E-10 85.8 17.5 184 183-385 11-219 (355)
61 PRK07994 DNA polymerase III su 98.4 6.1E-06 1.3E-10 90.9 17.2 188 183-382 13-218 (647)
62 PRK14087 dnaA chromosomal repl 98.4 4.7E-06 1E-10 89.2 16.0 166 209-387 141-322 (450)
63 COG1474 CDC6 Cdc6-related prot 98.4 1.2E-05 2.5E-10 83.4 17.7 276 183-472 14-334 (366)
64 TIGR00678 holB DNA polymerase 98.4 1.2E-05 2.6E-10 76.0 16.1 160 197-380 3-187 (188)
65 PRK14969 DNA polymerase III su 98.4 6.7E-06 1.5E-10 89.7 15.7 182 184-384 14-221 (527)
66 PRK07764 DNA polymerase III su 98.3 3.6E-05 7.8E-10 87.7 21.0 174 184-381 13-218 (824)
67 PRK05896 DNA polymerase III su 98.3 1E-05 2.2E-10 88.0 15.7 191 183-385 13-222 (605)
68 PRK14955 DNA polymerase III su 98.3 1.4E-05 3E-10 84.7 16.6 195 183-383 13-227 (397)
69 PF14516 AAA_35: AAA-like doma 98.3 0.00027 6E-09 72.8 25.8 200 182-391 7-246 (331)
70 PRK14952 DNA polymerase III su 98.3 2.8E-05 6.1E-10 85.2 19.3 177 184-384 11-220 (584)
71 KOG2028 ATPase related to the 98.3 5.5E-06 1.2E-10 82.1 12.2 174 185-379 137-331 (554)
72 PRK14970 DNA polymerase III su 98.3 2.3E-05 4.9E-10 82.4 17.9 181 183-381 14-206 (367)
73 PRK09111 DNA polymerase III su 98.3 3E-05 6.6E-10 85.4 19.3 190 184-383 22-232 (598)
74 PRK14088 dnaA chromosomal repl 98.3 2.3E-05 5E-10 83.9 17.6 159 209-383 130-304 (440)
75 TIGR00362 DnaA chromosomal rep 98.3 2.1E-05 4.5E-10 83.8 16.9 159 209-384 136-310 (405)
76 PRK03992 proteasome-activating 98.3 9.7E-06 2.1E-10 85.5 13.8 174 184-378 129-337 (389)
77 PRK00149 dnaA chromosomal repl 98.3 2.1E-05 4.6E-10 84.8 16.6 159 209-384 148-322 (450)
78 PF08937 DUF1863: MTH538 TIR-l 98.3 1.5E-06 3.2E-11 76.7 6.2 90 16-110 1-108 (130)
79 PRK14959 DNA polymerase III su 98.3 4.5E-05 9.8E-10 83.4 18.7 186 184-388 14-225 (624)
80 TIGR02639 ClpA ATP-dependent C 98.3 1.5E-05 3.2E-10 91.0 15.7 150 184-353 180-358 (731)
81 TIGR03345 VI_ClpV1 type VI sec 98.3 1.3E-05 2.8E-10 92.3 15.1 177 183-377 184-389 (852)
82 PRK14950 DNA polymerase III su 98.3 6.7E-05 1.5E-09 83.4 20.2 191 184-385 14-222 (585)
83 TIGR02881 spore_V_K stage V sp 98.3 1.1E-05 2.4E-10 80.4 12.7 152 187-354 7-192 (261)
84 PRK14954 DNA polymerase III su 98.2 4.7E-05 1E-09 84.0 18.1 190 184-379 14-223 (620)
85 PHA02544 44 clamp loader, smal 98.2 1.8E-05 4E-10 81.4 14.1 150 182-351 17-171 (316)
86 PRK07133 DNA polymerase III su 98.2 2.9E-05 6.4E-10 86.1 15.8 186 183-381 15-216 (725)
87 COG2255 RuvB Holliday junction 98.2 4.4E-05 9.6E-10 73.7 14.7 259 183-475 23-315 (332)
88 PRK14953 DNA polymerase III su 98.2 5.7E-05 1.2E-09 81.5 17.5 178 184-385 14-221 (486)
89 PF13191 AAA_16: AAA ATPase do 98.2 4.4E-06 9.6E-11 78.5 7.3 50 187-236 1-51 (185)
90 PRK06305 DNA polymerase III su 98.2 5.8E-05 1.3E-09 80.9 16.5 177 184-379 15-217 (451)
91 PRK08451 DNA polymerase III su 98.2 8.9E-05 1.9E-09 80.1 17.8 184 183-384 11-218 (535)
92 PRK06620 hypothetical protein; 98.1 2.2E-05 4.7E-10 75.5 11.7 135 210-383 45-188 (214)
93 KOG0617 Ras suppressor protein 98.1 2E-07 4.4E-12 82.6 -2.2 92 519-615 77-172 (264)
94 PRK12422 chromosomal replicati 98.1 5.7E-05 1.2E-09 80.7 15.9 153 209-378 141-307 (445)
95 TIGR02903 spore_lon_C ATP-depe 98.1 6.9E-05 1.5E-09 83.5 16.5 199 183-387 151-398 (615)
96 KOG0989 Replication factor C, 98.1 2.4E-05 5.3E-10 76.2 11.0 181 182-379 32-225 (346)
97 PRK06647 DNA polymerase III su 98.1 0.00027 5.9E-09 77.6 20.6 188 183-383 13-219 (563)
98 CHL00095 clpC Clp protease ATP 98.1 4.1E-05 8.9E-10 88.6 14.9 148 185-352 178-353 (821)
99 PRK14948 DNA polymerase III su 98.1 0.00045 9.7E-09 76.8 22.1 191 184-385 14-223 (620)
100 TIGR03689 pup_AAA proteasome A 98.1 3.9E-05 8.4E-10 82.4 13.3 157 184-353 180-378 (512)
101 PRK14086 dnaA chromosomal repl 98.1 0.0001 2.2E-09 80.3 16.0 156 210-382 315-486 (617)
102 PRK10865 protein disaggregatio 98.1 6.9E-05 1.5E-09 86.6 15.7 150 184-353 176-354 (857)
103 PRK14971 DNA polymerase III su 98.1 0.00037 7.9E-09 77.5 20.7 178 184-381 15-219 (614)
104 PRK07399 DNA polymerase III su 98.1 0.00036 7.7E-09 71.2 19.1 189 186-385 4-222 (314)
105 PRK05563 DNA polymerase III su 98.1 0.0002 4.3E-09 79.0 18.4 186 183-381 13-217 (559)
106 PF05673 DUF815: Protein of un 98.0 0.00041 8.9E-09 66.6 17.7 122 182-327 23-155 (249)
107 TIGR03346 chaperone_ClpB ATP-d 98.0 7.9E-05 1.7E-09 86.5 15.0 150 184-353 171-349 (852)
108 COG1373 Predicted ATPase (AAA+ 98.0 0.00032 6.9E-09 74.0 18.1 223 211-472 39-270 (398)
109 PF13855 LRR_8: Leucine rich r 98.0 8.7E-06 1.9E-10 61.3 4.6 55 548-605 1-61 (61)
110 PRK08116 hypothetical protein; 98.0 7.4E-05 1.6E-09 74.4 12.4 102 210-323 115-221 (268)
111 PRK05707 DNA polymerase III su 98.0 0.00032 6.9E-09 71.9 17.0 149 209-384 22-203 (328)
112 PRK14965 DNA polymerase III su 97.9 0.00018 3.9E-09 79.7 15.6 190 183-384 13-221 (576)
113 PTZ00454 26S protease regulato 97.9 0.00015 3.3E-09 76.2 13.8 176 183-379 142-352 (398)
114 PF00004 AAA: ATPase family as 97.9 0.00014 3E-09 64.1 11.7 23 212-234 1-23 (132)
115 PTZ00361 26 proteosome regulat 97.9 4.7E-05 1E-09 80.6 10.0 173 185-378 182-389 (438)
116 PRK11034 clpA ATP-dependent Cl 97.9 8.4E-05 1.8E-09 84.1 12.6 152 185-353 185-362 (758)
117 PRK09376 rho transcription ter 97.9 3.2E-05 6.9E-10 79.3 7.6 86 209-296 169-267 (416)
118 CHL00176 ftsH cell division pr 97.9 0.00039 8.4E-09 77.4 16.7 172 185-377 182-387 (638)
119 PRK08181 transposase; Validate 97.9 5.3E-05 1.1E-09 75.1 8.7 99 210-323 107-209 (269)
120 cd01128 rho_factor Transcripti 97.8 4.9E-05 1.1E-09 74.5 7.4 86 209-296 16-114 (249)
121 TIGR02880 cbbX_cfxQ probable R 97.8 0.00043 9.2E-09 69.8 14.3 128 211-353 60-208 (284)
122 PF08357 SEFIR: SEFIR domain; 97.8 2.5E-05 5.4E-10 70.8 4.9 64 17-80 2-70 (150)
123 PRK07952 DNA replication prote 97.8 0.00024 5.3E-09 69.4 12.0 115 195-322 85-204 (244)
124 COG0593 DnaA ATPase involved i 97.8 0.00059 1.3E-08 70.9 15.0 133 208-354 112-258 (408)
125 PF05621 TniB: Bacterial TniB 97.8 0.0008 1.7E-08 66.7 15.1 194 186-383 34-260 (302)
126 PRK12377 putative replication 97.8 0.00024 5.3E-09 69.5 11.5 100 209-322 101-205 (248)
127 CHL00181 cbbX CbbX; Provisiona 97.7 0.0008 1.7E-08 67.8 14.9 130 210-354 60-210 (287)
128 TIGR01241 FtsH_fam ATP-depende 97.7 0.00047 1E-08 75.4 14.3 174 184-378 53-260 (495)
129 PF01695 IstB_IS21: IstB-like 97.7 6.9E-05 1.5E-09 69.8 6.7 72 209-295 47-118 (178)
130 COG1222 RPT1 ATP-dependent 26S 97.7 0.00067 1.5E-08 67.8 13.6 181 186-388 151-371 (406)
131 PRK09183 transposase/IS protei 97.7 0.00013 2.7E-09 72.5 8.4 99 210-323 103-206 (259)
132 COG2607 Predicted ATPase (AAA+ 97.7 0.001 2.2E-08 62.9 13.7 102 183-308 57-165 (287)
133 PRK08769 DNA polymerase III su 97.7 0.0024 5.3E-08 64.9 17.2 178 195-385 13-209 (319)
134 KOG2543 Origin recognition com 97.7 0.00028 6.1E-09 70.9 10.1 163 184-353 4-193 (438)
135 TIGR00767 rho transcription te 97.6 0.00015 3.2E-09 74.8 8.1 86 209-296 168-266 (415)
136 KOG2227 Pre-initiation complex 97.6 0.0012 2.5E-08 68.4 14.3 199 183-386 147-370 (529)
137 TIGR00602 rad24 checkpoint pro 97.6 0.00049 1.1E-08 76.1 12.5 52 182-233 80-134 (637)
138 KOG0991 Replication factor C, 97.6 0.001 2.3E-08 62.4 12.6 49 183-233 24-72 (333)
139 PRK08058 DNA polymerase III su 97.6 0.0019 4.1E-08 66.6 16.1 142 187-352 6-181 (329)
140 PRK06526 transposase; Provisio 97.6 0.00013 2.8E-09 72.0 7.1 98 210-323 99-201 (254)
141 PF12799 LRR_4: Leucine Rich r 97.6 5.9E-05 1.3E-09 52.3 3.3 37 573-609 1-40 (44)
142 COG3267 ExeA Type II secretory 97.6 0.0038 8.1E-08 59.9 16.1 174 206-386 48-247 (269)
143 PRK08939 primosomal protein Dn 97.6 0.00067 1.5E-08 68.8 11.8 118 190-322 135-260 (306)
144 TIGR01243 CDC48 AAA family ATP 97.5 0.0017 3.6E-08 74.7 15.7 173 185-378 452-657 (733)
145 TIGR02639 ClpA ATP-dependent C 97.5 0.0013 2.9E-08 75.2 14.8 127 185-322 453-603 (731)
146 PRK10536 hypothetical protein; 97.5 0.00067 1.5E-08 65.9 10.3 132 185-323 54-213 (262)
147 KOG4658 Apoptotic ATPase [Sign 97.5 5.7E-05 1.2E-09 86.9 3.2 66 549-615 546-617 (889)
148 smart00382 AAA ATPases associa 97.5 0.00042 9.1E-09 61.3 8.3 35 210-244 3-37 (148)
149 PRK06921 hypothetical protein; 97.5 0.00029 6.3E-09 70.1 7.9 36 209-244 117-153 (266)
150 KOG0444 Cytoskeletal regulator 97.5 1.3E-05 2.9E-10 84.6 -1.8 75 538-615 212-290 (1255)
151 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0028 6E-08 68.4 15.7 173 185-378 227-429 (489)
152 PRK04132 replication factor C 97.5 0.0048 1E-07 70.3 18.2 153 215-383 570-730 (846)
153 KOG0444 Cytoskeletal regulator 97.5 2.6E-05 5.6E-10 82.4 0.1 66 542-610 120-195 (1255)
154 PF10443 RNA12: RNA12 protein; 97.5 0.043 9.4E-07 57.1 23.3 192 191-390 1-284 (431)
155 PRK06871 DNA polymerase III su 97.5 0.0047 1E-07 63.0 16.2 171 195-381 11-200 (325)
156 COG1484 DnaC DNA replication p 97.5 0.001 2.2E-08 65.7 11.1 74 208-295 104-177 (254)
157 COG2812 DnaX DNA polymerase II 97.5 0.0035 7.6E-08 67.2 15.7 186 184-379 14-215 (515)
158 KOG0741 AAA+-type ATPase [Post 97.4 0.0032 7E-08 65.9 14.5 148 207-374 536-704 (744)
159 PRK07993 DNA polymerase III su 97.4 0.0037 8.1E-08 64.3 15.1 171 195-382 11-202 (334)
160 PF02562 PhoH: PhoH-like prote 97.4 0.0014 3E-08 62.0 10.8 125 191-322 5-155 (205)
161 TIGR01243 CDC48 AAA family ATP 97.4 0.0023 5E-08 73.5 14.8 172 185-379 177-382 (733)
162 PRK06090 DNA polymerase III su 97.4 0.0089 1.9E-07 60.8 17.3 158 195-384 12-201 (319)
163 PRK06835 DNA replication prote 97.4 0.00093 2E-08 68.4 10.1 100 210-322 184-288 (329)
164 PF13177 DNA_pol3_delta2: DNA 97.4 0.0038 8.3E-08 57.2 12.9 138 190-341 1-162 (162)
165 PRK11331 5-methylcytosine-spec 97.3 0.00045 9.8E-09 72.5 7.2 99 186-296 175-283 (459)
166 COG0470 HolB ATPase involved i 97.3 0.0023 5.1E-08 65.9 12.6 144 187-345 2-173 (325)
167 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0013 2.7E-08 76.6 11.4 129 185-322 564-717 (852)
168 COG0542 clpA ATP-binding subun 97.3 0.001 2.3E-08 74.1 9.5 128 185-321 490-642 (786)
169 PF13855 LRR_8: Leucine rich r 97.3 0.0004 8.6E-09 52.2 4.4 58 522-585 2-61 (61)
170 PLN00020 ribulose bisphosphate 97.3 0.0082 1.8E-07 61.2 14.9 151 207-379 146-333 (413)
171 PRK10865 protein disaggregatio 97.3 0.0017 3.7E-08 75.3 11.6 115 185-308 567-695 (857)
172 CHL00095 clpC Clp protease ATP 97.3 0.0015 3.3E-08 75.7 11.2 129 185-322 508-661 (821)
173 KOG0735 AAA+-type ATPase [Post 97.2 0.01 2.2E-07 64.5 15.6 158 209-382 431-614 (952)
174 PF14580 LRR_9: Leucine-rich r 97.2 0.0003 6.5E-09 64.9 3.8 81 521-609 42-129 (175)
175 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0093 2E-07 59.4 14.7 23 211-233 23-45 (262)
176 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0015 3.4E-08 75.4 10.3 129 185-322 565-718 (852)
177 PF14532 Sigma54_activ_2: Sigm 97.2 0.00056 1.2E-08 61.0 5.3 107 189-323 1-110 (138)
178 PRK06964 DNA polymerase III su 97.2 0.032 6.9E-07 57.4 18.6 91 284-384 131-225 (342)
179 COG0542 clpA ATP-binding subun 97.2 0.0049 1.1E-07 68.9 13.3 151 184-352 168-345 (786)
180 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0061 1.3E-07 55.2 11.5 113 210-324 3-139 (159)
181 PRK08118 topology modulation p 97.1 0.00063 1.4E-08 62.7 4.8 32 211-242 3-37 (167)
182 PRK13531 regulatory ATPase Rav 97.1 0.0036 7.9E-08 66.4 10.8 46 185-234 19-64 (498)
183 PHA00729 NTP-binding motif con 97.1 0.0045 9.7E-08 59.3 10.5 27 208-234 16-42 (226)
184 PF12799 LRR_4: Leucine Rich r 97.1 0.0004 8.8E-09 48.1 2.5 38 548-588 1-39 (44)
185 PLN00113 leucine-rich repeat r 97.1 0.00089 1.9E-08 79.9 7.1 43 572-614 139-186 (968)
186 KOG2228 Origin recognition com 97.0 0.013 2.7E-07 58.5 13.3 169 184-353 22-219 (408)
187 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00069 1.5E-08 69.2 4.9 49 187-235 52-104 (361)
188 COG1223 Predicted ATPase (AAA+ 97.0 0.012 2.5E-07 56.5 12.6 173 185-378 120-319 (368)
189 PRK11034 clpA ATP-dependent Cl 97.0 0.0027 5.9E-08 72.1 10.0 112 185-308 457-582 (758)
190 cd01131 PilT Pilus retraction 97.0 0.0022 4.8E-08 61.0 7.9 108 210-324 2-110 (198)
191 PLN03150 hypothetical protein; 97.0 0.00084 1.8E-08 75.4 5.8 87 523-614 420-512 (623)
192 KOG0617 Ras suppressor protein 97.0 3.2E-05 7E-10 68.9 -4.3 73 541-616 120-196 (264)
193 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0092 2E-07 63.7 12.9 172 185-377 189-395 (802)
194 TIGR00763 lon ATP-dependent pr 97.0 0.0057 1.2E-07 70.6 12.5 52 186-237 320-375 (775)
195 KOG2035 Replication factor C, 97.0 0.047 1E-06 53.0 16.3 226 186-422 13-282 (351)
196 PRK04296 thymidine kinase; Pro 97.0 0.0021 4.6E-08 60.7 7.2 107 210-324 3-117 (190)
197 PF13207 AAA_17: AAA domain; P 96.9 0.00067 1.5E-08 58.8 3.4 23 211-233 1-23 (121)
198 PRK10787 DNA-binding ATP-depen 96.9 0.0028 6.1E-08 72.5 9.1 158 186-353 322-506 (784)
199 KOG1514 Origin recognition com 96.9 0.039 8.5E-07 60.2 16.9 193 184-384 394-621 (767)
200 TIGR02902 spore_lonB ATP-depen 96.9 0.0065 1.4E-07 66.8 11.1 47 185-233 64-110 (531)
201 PRK06696 uridine kinase; Valid 96.9 0.0023 5E-08 62.1 6.7 46 191-236 3-49 (223)
202 COG1618 Predicted nucleotide k 96.9 0.0012 2.7E-08 58.5 4.2 34 210-243 6-40 (179)
203 PRK08699 DNA polymerase III su 96.9 0.04 8.6E-07 56.5 15.9 86 285-380 113-202 (325)
204 PRK09361 radB DNA repair and r 96.8 0.004 8.7E-08 60.6 8.3 48 197-244 11-58 (225)
205 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0054 1.2E-07 60.6 8.8 86 209-296 69-174 (274)
206 cd01120 RecA-like_NTPases RecA 96.8 0.0093 2E-07 54.3 10.0 34 211-244 1-34 (165)
207 PF04665 Pox_A32: Poxvirus A32 96.8 0.0048 1E-07 59.7 8.2 34 211-244 15-48 (241)
208 PF00158 Sigma54_activat: Sigm 96.8 0.0027 5.8E-08 58.5 6.2 45 188-232 1-45 (168)
209 KOG0730 AAA+-type ATPase [Post 96.8 0.014 3.1E-07 63.1 12.3 171 187-378 435-637 (693)
210 PRK12608 transcription termina 96.8 0.0072 1.6E-07 62.1 9.8 96 197-295 122-230 (380)
211 KOG0739 AAA+-type ATPase [Post 96.8 0.022 4.7E-07 55.7 12.3 174 184-378 131-335 (439)
212 TIGR01817 nifA Nif-specific re 96.8 0.022 4.7E-07 63.1 14.4 51 183-233 193-243 (534)
213 KOG0731 AAA+-type ATPase conta 96.8 0.024 5.1E-07 63.2 14.3 178 184-381 309-521 (774)
214 PRK11889 flhF flagellar biosyn 96.8 0.042 9.1E-07 56.9 15.1 37 208-244 240-276 (436)
215 PF07725 LRR_3: Leucine Rich R 96.8 0.00088 1.9E-08 37.2 1.6 20 594-613 1-20 (20)
216 TIGR02237 recomb_radB DNA repa 96.8 0.0058 1.2E-07 58.7 8.5 38 207-244 10-47 (209)
217 KOG0744 AAA+-type ATPase [Post 96.8 0.0076 1.7E-07 59.5 9.1 36 209-244 177-216 (423)
218 PRK07667 uridine kinase; Provi 96.7 0.0036 7.7E-08 59.3 6.8 42 195-236 3-44 (193)
219 PRK07261 topology modulation p 96.7 0.0062 1.3E-07 56.4 8.1 23 211-233 2-24 (171)
220 PLN00113 leucine-rich repeat r 96.7 0.0017 3.6E-08 77.6 5.4 91 520-615 163-259 (968)
221 PRK14974 cell division protein 96.7 0.026 5.7E-07 57.9 13.2 29 208-236 139-167 (336)
222 PRK10733 hflB ATP-dependent me 96.7 0.014 3.1E-07 65.7 12.4 150 187-354 153-336 (644)
223 PF03215 Rad17: Rad17 cell cyc 96.7 0.016 3.5E-07 63.0 12.0 59 184-244 17-78 (519)
224 PRK06067 flagellar accessory p 96.6 0.011 2.4E-07 57.9 9.6 48 197-244 13-60 (234)
225 KOG1969 DNA replication checkp 96.6 0.0056 1.2E-07 66.7 7.8 74 206-296 323-398 (877)
226 PRK11608 pspF phage shock prot 96.6 0.0074 1.6E-07 62.2 8.5 47 186-232 6-52 (326)
227 KOG0743 AAA+-type ATPase [Post 96.6 0.024 5.1E-07 58.9 11.9 150 209-388 235-413 (457)
228 PF00560 LRR_1: Leucine Rich R 96.6 0.001 2.3E-08 38.4 1.3 22 594-615 1-22 (22)
229 cd01394 radB RadB. The archaea 96.6 0.013 2.8E-07 56.7 9.7 49 196-244 6-54 (218)
230 COG0466 Lon ATP-dependent Lon 96.6 0.0023 5E-08 69.7 4.7 156 186-353 323-508 (782)
231 KOG0733 Nuclear AAA ATPase (VC 96.6 0.016 3.5E-07 62.0 10.8 128 209-354 545-693 (802)
232 PRK00771 signal recognition pa 96.6 0.063 1.4E-06 57.2 15.3 29 208-236 94-122 (437)
233 PF00448 SRP54: SRP54-type pro 96.5 0.014 3E-07 55.2 9.3 36 209-244 1-36 (196)
234 cd01121 Sms Sms (bacterial rad 96.5 0.015 3.3E-07 60.6 10.1 92 196-294 69-167 (372)
235 PRK12724 flagellar biosynthesi 96.5 0.032 6.9E-07 58.4 12.3 25 209-233 223-247 (432)
236 KOG1970 Checkpoint RAD17-RFC c 96.5 0.052 1.1E-06 57.6 13.7 46 188-233 84-134 (634)
237 PRK05800 cobU adenosylcobinami 96.5 0.0056 1.2E-07 56.5 6.1 76 211-294 3-85 (170)
238 TIGR01650 PD_CobS cobaltochela 96.5 0.032 6.8E-07 56.6 11.9 51 183-237 42-92 (327)
239 cd00544 CobU Adenosylcobinamid 96.5 0.013 2.8E-07 54.0 8.4 75 212-294 2-82 (169)
240 cd01393 recA_like RecA is a b 96.5 0.012 2.5E-07 57.3 8.7 48 197-244 7-60 (226)
241 PRK15455 PrkA family serine pr 96.5 0.0031 6.8E-08 67.8 4.8 49 187-235 77-129 (644)
242 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.012 2.5E-07 57.7 8.5 47 198-244 8-60 (235)
243 PRK15429 formate hydrogenlyase 96.5 0.015 3.3E-07 66.3 10.7 48 186-233 376-423 (686)
244 COG1066 Sms Predicted ATP-depe 96.4 0.024 5.3E-07 58.1 10.6 93 195-295 79-178 (456)
245 PLN03210 Resistant to P. syrin 96.4 0.0047 1E-07 74.7 6.6 64 547-613 610-678 (1153)
246 PF13671 AAA_33: AAA domain; P 96.4 0.011 2.3E-07 52.8 7.3 23 211-233 1-23 (143)
247 TIGR00064 ftsY signal recognit 96.4 0.015 3.3E-07 58.1 8.9 30 207-236 70-99 (272)
248 TIGR01420 pilT_fam pilus retra 96.4 0.0065 1.4E-07 63.0 6.5 104 209-322 122-229 (343)
249 TIGR00708 cobA cob(I)alamin ad 96.4 0.02 4.4E-07 52.4 8.9 113 210-323 6-140 (173)
250 COG0464 SpoVK ATPases of the A 96.4 0.091 2E-06 57.6 15.8 172 186-376 242-445 (494)
251 TIGR02974 phageshock_pspF psp 96.4 0.015 3.4E-07 59.8 9.1 45 188-232 1-45 (329)
252 PTZ00494 tuzin-like protein; P 96.4 0.58 1.3E-05 48.9 19.9 191 152-353 329-544 (664)
253 KOG0729 26S proteasome regulat 96.3 0.025 5.4E-07 54.3 9.5 47 187-233 178-235 (435)
254 PF13604 AAA_30: AAA domain; P 96.3 0.019 4.1E-07 54.5 8.9 111 195-321 7-129 (196)
255 KOG0472 Leucine-rich repeat pr 96.3 0.00092 2E-08 67.6 -0.0 70 539-612 243-316 (565)
256 PF14580 LRR_9: Leucine-rich r 96.3 0.002 4.4E-08 59.4 2.1 80 520-608 18-103 (175)
257 PRK05541 adenylylsulfate kinas 96.3 0.0059 1.3E-07 56.8 5.0 37 208-244 6-42 (176)
258 PRK05022 anaerobic nitric oxid 96.3 0.017 3.6E-07 63.5 9.3 51 184-234 185-235 (509)
259 PF01583 APS_kinase: Adenylyls 96.3 0.0079 1.7E-07 54.2 5.5 35 210-244 3-37 (156)
260 PF13238 AAA_18: AAA domain; P 96.2 0.0034 7.4E-08 54.8 3.1 22 212-233 1-22 (129)
261 KOG1051 Chaperone HSP104 and r 96.2 0.045 9.8E-07 62.3 12.5 109 187-307 563-684 (898)
262 PRK14722 flhF flagellar biosyn 96.2 0.066 1.4E-06 55.6 12.8 83 209-295 137-225 (374)
263 KOG3665 ZYG-1-like serine/thre 96.2 0.0023 4.9E-08 72.1 2.2 84 519-608 146-235 (699)
264 PF07724 AAA_2: AAA domain (Cd 96.2 0.0095 2.1E-07 55.1 5.9 42 209-251 3-45 (171)
265 KOG0728 26S proteasome regulat 96.2 0.1 2.2E-06 49.9 12.5 143 190-353 151-331 (404)
266 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.027 5.8E-07 52.7 8.8 23 211-233 1-23 (183)
267 COG4088 Predicted nucleotide k 96.1 0.01 2.2E-07 55.0 5.6 27 210-236 2-28 (261)
268 TIGR00416 sms DNA repair prote 96.1 0.04 8.7E-07 59.2 11.0 94 195-295 80-180 (454)
269 PF10236 DAP3: Mitochondrial r 96.1 0.26 5.7E-06 50.2 16.2 48 334-381 258-306 (309)
270 TIGR00959 ffh signal recogniti 96.1 0.23 4.9E-06 52.9 16.1 27 208-234 98-124 (428)
271 cd01129 PulE-GspE PulE/GspE Th 96.1 0.012 2.5E-07 58.6 6.2 101 194-306 68-170 (264)
272 PRK11823 DNA repair protein Ra 96.1 0.041 8.8E-07 59.1 10.8 94 195-295 66-166 (446)
273 KOG2004 Mitochondrial ATP-depe 96.1 0.0062 1.4E-07 66.2 4.4 52 186-237 411-466 (906)
274 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.068 1.5E-06 48.6 10.7 43 190-232 82-125 (157)
275 PF00485 PRK: Phosphoribulokin 96.0 0.0054 1.2E-07 58.1 3.5 26 211-236 1-26 (194)
276 KOG0734 AAA+-type ATPase conta 96.0 0.01 2.2E-07 62.4 5.6 47 186-232 304-360 (752)
277 PRK10867 signal recognition pa 96.0 0.096 2.1E-06 55.7 13.0 29 208-236 99-127 (433)
278 KOG0472 Leucine-rich repeat pr 96.0 0.0011 2.3E-08 67.2 -1.7 72 543-617 223-299 (565)
279 TIGR03574 selen_PSTK L-seryl-t 96.0 0.018 4E-07 56.9 7.1 26 211-236 1-26 (249)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.029 6.3E-07 50.3 7.7 102 209-326 26-130 (144)
281 PTZ00301 uridine kinase; Provi 95.9 0.0073 1.6E-07 57.7 4.0 29 209-237 3-31 (210)
282 PRK07132 DNA polymerase III su 95.9 1.7 3.8E-05 43.9 21.1 165 196-383 6-184 (299)
283 COG1875 NYN ribonuclease and A 95.9 0.059 1.3E-06 54.5 10.1 129 189-322 227-387 (436)
284 CHL00206 ycf2 Ycf2; Provisiona 95.9 0.06 1.3E-06 65.4 11.8 26 207-232 1628-1653(2281)
285 PF03308 ArgK: ArgK protein; 95.9 0.023 5.1E-07 55.1 7.1 43 194-236 14-56 (266)
286 TIGR02012 tigrfam_recA protein 95.9 0.048 1E-06 55.4 9.7 48 197-244 42-90 (321)
287 PF10137 TIR-like: Predicted n 95.9 0.02 4.4E-07 49.5 6.0 78 17-97 1-92 (125)
288 cd00983 recA RecA is a bacter 95.9 0.045 9.8E-07 55.7 9.5 48 197-244 42-90 (325)
289 PF00910 RNA_helicase: RNA hel 95.9 0.0061 1.3E-07 51.6 2.7 26 212-237 1-26 (107)
290 KOG4194 Membrane glycoprotein 95.9 0.0078 1.7E-07 63.9 4.0 85 521-611 125-215 (873)
291 cd02019 NK Nucleoside/nucleoti 95.9 0.007 1.5E-07 46.6 2.8 23 211-233 1-23 (69)
292 PF08433 KTI12: Chromatin asso 95.8 0.027 6E-07 56.0 7.7 35 210-244 2-36 (270)
293 PRK08233 hypothetical protein; 95.8 0.0075 1.6E-07 56.4 3.5 26 209-234 3-28 (182)
294 COG0467 RAD55 RecA-superfamily 95.8 0.029 6.2E-07 55.9 7.8 45 200-244 14-58 (260)
295 TIGR01425 SRP54_euk signal rec 95.8 0.039 8.4E-07 58.3 8.9 29 208-236 99-127 (429)
296 PRK05986 cob(I)alamin adenolsy 95.8 0.041 8.9E-07 51.3 8.0 113 209-323 22-158 (191)
297 PRK09354 recA recombinase A; P 95.8 0.049 1.1E-06 55.9 9.3 48 197-244 47-95 (349)
298 PRK06762 hypothetical protein; 95.8 0.0084 1.8E-07 55.2 3.5 24 210-233 3-26 (166)
299 PRK05703 flhF flagellar biosyn 95.8 0.31 6.8E-06 51.9 15.8 26 209-234 221-246 (424)
300 PRK09270 nucleoside triphospha 95.8 0.017 3.6E-07 56.4 5.7 31 206-236 30-60 (229)
301 TIGR00150 HI0065_YjeE ATPase, 95.7 0.015 3.3E-07 50.9 4.8 40 194-233 7-46 (133)
302 PF07726 AAA_3: ATPase family 95.7 0.006 1.3E-07 52.6 2.2 28 212-239 2-29 (131)
303 PRK05480 uridine/cytidine kina 95.7 0.01 2.2E-07 57.0 4.0 27 207-233 4-30 (209)
304 PF07728 AAA_5: AAA domain (dy 95.7 0.012 2.5E-07 52.4 4.1 22 212-233 2-23 (139)
305 COG0563 Adk Adenylate kinase a 95.7 0.02 4.4E-07 53.2 5.8 22 211-232 2-23 (178)
306 KOG1259 Nischarin, modulator o 95.7 0.005 1.1E-07 60.1 1.7 81 520-608 306-389 (490)
307 PRK12723 flagellar biosynthesi 95.7 0.16 3.4E-06 53.3 12.9 27 208-234 173-199 (388)
308 KOG0736 Peroxisome assembly fa 95.7 0.27 5.8E-06 54.5 14.8 93 186-296 672-775 (953)
309 cd03238 ABC_UvrA The excision 95.7 0.064 1.4E-06 49.8 9.0 23 209-231 21-43 (176)
310 PRK15115 response regulator Gl 95.7 0.67 1.4E-05 50.1 18.3 47 187-233 135-181 (444)
311 TIGR02238 recomb_DMC1 meiotic 95.6 0.059 1.3E-06 54.9 9.3 49 196-244 83-137 (313)
312 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.043 9.2E-07 53.8 8.1 48 197-244 9-56 (237)
313 PRK11388 DNA-binding transcrip 95.6 0.2 4.3E-06 56.9 14.5 48 185-232 324-371 (638)
314 COG0465 HflB ATP-dependent Zn 95.6 0.11 2.5E-06 56.7 11.8 177 184-380 148-357 (596)
315 PRK03839 putative kinase; Prov 95.6 0.0094 2E-07 55.7 3.2 24 211-234 2-25 (180)
316 cd03247 ABCC_cytochrome_bd The 95.6 0.076 1.7E-06 49.4 9.3 24 209-232 28-51 (178)
317 TIGR02655 circ_KaiC circadian 95.6 0.034 7.4E-07 60.6 7.8 51 194-244 248-298 (484)
318 cd02027 APSK Adenosine 5'-phos 95.6 0.081 1.7E-06 47.7 9.1 24 211-234 1-24 (149)
319 PRK12726 flagellar biosynthesi 95.5 0.11 2.4E-06 53.7 10.7 37 208-244 205-241 (407)
320 KOG0727 26S proteasome regulat 95.5 0.064 1.4E-06 51.2 8.3 51 187-237 156-217 (408)
321 COG5635 Predicted NTPase (NACH 95.5 0.14 3E-06 59.7 13.1 193 210-403 223-447 (824)
322 TIGR00235 udk uridine kinase. 95.5 0.013 2.8E-07 56.1 3.9 28 207-234 4-31 (207)
323 cd01122 GP4d_helicase GP4d_hel 95.5 0.13 2.8E-06 51.5 11.3 53 208-266 29-82 (271)
324 TIGR03499 FlhF flagellar biosy 95.5 0.095 2.1E-06 52.7 10.2 29 208-236 193-221 (282)
325 COG0572 Udk Uridine kinase [Nu 95.5 0.016 3.4E-07 54.9 4.3 30 207-236 6-35 (218)
326 PRK04040 adenylate kinase; Pro 95.5 0.013 2.9E-07 55.0 3.7 25 210-234 3-27 (188)
327 PRK06547 hypothetical protein; 95.5 0.014 3.1E-07 53.9 3.8 27 206-232 12-38 (172)
328 KOG1259 Nischarin, modulator o 95.5 0.0052 1.1E-07 59.9 0.9 71 541-616 300-374 (490)
329 TIGR01360 aden_kin_iso1 adenyl 95.5 0.012 2.7E-07 55.2 3.4 26 208-233 2-27 (188)
330 PLN03187 meiotic recombination 95.4 0.074 1.6E-06 54.8 9.2 48 197-244 114-167 (344)
331 PRK00625 shikimate kinase; Pro 95.4 0.011 2.5E-07 54.6 3.0 24 211-234 2-25 (173)
332 PRK14527 adenylate kinase; Pro 95.4 0.024 5.3E-07 53.5 5.3 26 208-233 5-30 (191)
333 PRK00131 aroK shikimate kinase 95.4 0.012 2.6E-07 54.4 3.2 25 209-233 4-28 (175)
334 KOG3665 ZYG-1-like serine/thre 95.4 0.0041 9E-08 70.0 0.1 83 523-607 124-209 (699)
335 COG3854 SpoIIIAA ncharacterize 95.4 0.094 2E-06 49.6 8.9 109 211-322 139-252 (308)
336 PF03969 AFG1_ATPase: AFG1-lik 95.4 0.057 1.2E-06 56.1 8.4 101 208-322 61-167 (362)
337 cd03115 SRP The signal recogni 95.4 0.17 3.6E-06 46.8 10.8 26 211-236 2-27 (173)
338 cd02028 UMPK_like Uridine mono 95.4 0.02 4.4E-07 53.4 4.6 26 211-236 1-26 (179)
339 KOG0735 AAA+-type ATPase [Post 95.3 0.4 8.8E-06 52.7 14.5 173 187-380 668-872 (952)
340 cd03223 ABCD_peroxisomal_ALDP 95.3 0.088 1.9E-06 48.4 8.6 121 209-337 27-160 (166)
341 KOG0618 Serine/threonine phosp 95.3 0.0042 9E-08 69.4 -0.5 61 550-613 47-111 (1081)
342 cd01124 KaiC KaiC is a circadi 95.3 0.042 9E-07 51.5 6.4 33 212-244 2-34 (187)
343 cd01857 HSR1_MMR1 HSR1/MMR1. 95.3 0.18 4E-06 44.9 10.2 50 60-111 3-52 (141)
344 cd03228 ABCC_MRP_Like The MRP 95.3 0.082 1.8E-06 48.9 8.2 123 209-337 28-167 (171)
345 cd00227 CPT Chloramphenicol (C 95.3 0.015 3.2E-07 54.1 3.2 24 210-233 3-26 (175)
346 PRK13765 ATP-dependent proteas 95.3 0.012 2.5E-07 65.6 2.9 76 182-266 27-103 (637)
347 TIGR01069 mutS2 MutS2 family p 95.3 0.05 1.1E-06 62.4 8.0 179 209-404 322-521 (771)
348 PRK00889 adenylylsulfate kinas 95.2 0.03 6.6E-07 52.0 5.3 27 209-235 4-30 (175)
349 cd03222 ABC_RNaseL_inhibitor T 95.2 0.06 1.3E-06 50.0 7.0 104 210-327 26-136 (177)
350 PF03266 NTPase_1: NTPase; In 95.2 0.025 5.5E-07 52.0 4.5 24 212-235 2-25 (168)
351 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.3E-07 31.7 1.2 17 593-609 1-17 (17)
352 cd03216 ABC_Carb_Monos_I This 95.2 0.031 6.7E-07 51.3 5.0 113 210-325 27-144 (163)
353 COG1703 ArgK Putative periplas 95.2 0.04 8.7E-07 54.3 5.9 43 196-238 38-80 (323)
354 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.034 7.3E-07 55.3 5.6 37 208-244 35-71 (259)
355 cd03214 ABC_Iron-Siderophores_ 95.1 0.067 1.5E-06 49.9 7.4 115 209-326 25-161 (180)
356 PRK14529 adenylate kinase; Pro 95.1 0.072 1.6E-06 51.3 7.6 91 212-304 3-96 (223)
357 cd01125 repA Hexameric Replica 95.1 0.24 5.2E-06 48.6 11.5 24 211-234 3-26 (239)
358 PRK13947 shikimate kinase; Pro 95.1 0.015 3.3E-07 53.7 3.0 24 211-234 3-26 (171)
359 PF08423 Rad51: Rad51; InterP 95.1 0.047 1E-06 54.1 6.4 48 197-244 26-79 (256)
360 cd01130 VirB11-like_ATPase Typ 95.1 0.016 3.6E-07 54.4 3.0 88 209-304 25-119 (186)
361 PRK10820 DNA-binding transcrip 95.1 0.077 1.7E-06 58.4 8.7 49 184-232 202-250 (520)
362 PRK15370 E3 ubiquitin-protein 95.1 0.031 6.7E-07 63.7 5.6 59 549-611 242-301 (754)
363 PTZ00035 Rad51 protein; Provis 95.1 0.13 2.8E-06 53.1 9.7 38 196-233 105-142 (337)
364 TIGR02782 TrbB_P P-type conjug 95.0 0.019 4.2E-07 58.2 3.5 88 210-304 133-223 (299)
365 PRK15386 type III secretion pr 95.0 0.021 4.6E-07 59.5 3.9 62 549-616 73-138 (426)
366 COG1102 Cmk Cytidylate kinase 95.0 0.019 4E-07 51.3 2.9 24 211-234 2-25 (179)
367 COG2884 FtsE Predicted ATPase 95.0 0.12 2.6E-06 47.6 8.2 52 277-329 147-203 (223)
368 PRK14528 adenylate kinase; Pro 95.0 0.1 2.2E-06 49.0 8.2 24 210-233 2-25 (186)
369 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.045 9.7E-07 56.9 6.2 94 209-306 134-233 (358)
370 PF13245 AAA_19: Part of AAA d 95.0 0.051 1.1E-06 42.6 5.1 24 209-232 10-33 (76)
371 PRK14738 gmk guanylate kinase; 95.0 0.02 4.3E-07 54.8 3.3 31 202-232 6-36 (206)
372 PRK03846 adenylylsulfate kinas 95.0 0.04 8.7E-07 52.3 5.4 38 207-244 22-59 (198)
373 PF00625 Guanylate_kin: Guanyl 95.0 0.024 5.2E-07 53.1 3.8 36 209-244 2-37 (183)
374 PF06745 KaiC: KaiC; InterPro 95.0 0.037 7.9E-07 53.8 5.2 47 198-244 8-55 (226)
375 PF03205 MobB: Molybdopterin g 95.0 0.042 9E-07 48.9 5.1 35 210-244 1-36 (140)
376 PLN03150 hypothetical protein; 95.0 0.019 4.2E-07 64.6 3.6 65 549-615 419-489 (623)
377 cd02021 GntK Gluconate kinase 94.9 0.017 3.8E-07 52.0 2.7 22 211-232 1-22 (150)
378 TIGR03600 phage_DnaB phage rep 94.9 0.66 1.4E-05 49.7 15.2 72 188-266 174-246 (421)
379 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.091 2E-06 50.5 7.7 24 209-232 29-52 (213)
380 COG2401 ABC-type ATPase fused 94.9 0.04 8.6E-07 56.5 5.3 24 209-232 409-432 (593)
381 PRK14723 flhF flagellar biosyn 94.9 0.36 7.9E-06 54.6 13.3 26 209-234 185-210 (767)
382 COG0003 ArsA Predicted ATPase 94.9 0.047 1E-06 55.6 5.9 47 209-259 2-48 (322)
383 PRK05973 replicative DNA helic 94.9 0.087 1.9E-06 51.2 7.4 37 208-244 63-99 (237)
384 TIGR02322 phosphon_PhnN phosph 94.9 0.022 4.9E-07 53.1 3.3 25 210-234 2-26 (179)
385 PRK09435 membrane ATPase/prote 94.9 0.062 1.3E-06 55.0 6.7 41 196-236 43-83 (332)
386 cd02024 NRK1 Nicotinamide ribo 94.9 0.019 4.2E-07 53.7 2.8 23 211-233 1-23 (187)
387 KOG0726 26S proteasome regulat 94.9 0.091 2E-06 51.4 7.3 52 186-237 185-247 (440)
388 TIGR00390 hslU ATP-dependent p 94.9 0.034 7.4E-07 58.0 4.8 51 186-236 12-74 (441)
389 PRK04328 hypothetical protein; 94.9 0.085 1.9E-06 52.1 7.5 48 197-244 11-58 (249)
390 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.057 1.2E-06 52.6 6.2 48 197-244 8-55 (229)
391 TIGR02858 spore_III_AA stage I 94.8 0.13 2.9E-06 51.1 8.8 112 208-325 110-231 (270)
392 PF13086 AAA_11: AAA domain; P 94.8 0.056 1.2E-06 52.4 6.2 36 194-233 6-41 (236)
393 PF00437 T2SE: Type II/IV secr 94.8 0.018 4E-07 57.6 2.8 124 186-321 104-230 (270)
394 cd02023 UMPK Uridine monophosp 94.8 0.019 4E-07 54.6 2.7 23 211-233 1-23 (198)
395 cd02020 CMPK Cytidine monophos 94.8 0.02 4.3E-07 51.3 2.7 23 211-233 1-23 (147)
396 COG1936 Predicted nucleotide k 94.8 0.022 4.8E-07 51.5 2.8 20 211-230 2-21 (180)
397 PRK05439 pantothenate kinase; 94.8 0.042 9.2E-07 55.6 5.2 30 206-235 83-112 (311)
398 PF07693 KAP_NTPase: KAP famil 94.8 0.095 2.1E-06 54.0 8.0 45 192-236 2-47 (325)
399 COG1428 Deoxynucleoside kinase 94.8 0.024 5.2E-07 53.1 3.0 26 209-234 4-29 (216)
400 PF02374 ArsA_ATPase: Anion-tr 94.8 0.042 9.2E-07 55.9 5.2 35 210-244 2-36 (305)
401 PRK06217 hypothetical protein; 94.8 0.023 5E-07 53.2 3.1 23 211-233 3-25 (183)
402 cd02025 PanK Pantothenate kina 94.8 0.022 4.7E-07 55.1 2.9 24 211-234 1-24 (220)
403 PRK10463 hydrogenase nickel in 94.8 0.055 1.2E-06 54.0 5.8 36 206-241 101-136 (290)
404 COG0529 CysC Adenylylsulfate k 94.7 0.05 1.1E-06 49.4 4.9 33 207-239 21-53 (197)
405 COG1224 TIP49 DNA helicase TIP 94.7 0.062 1.4E-06 54.1 6.0 56 183-238 36-94 (450)
406 PRK05201 hslU ATP-dependent pr 94.7 0.044 9.4E-07 57.3 5.2 51 185-235 14-76 (443)
407 COG4608 AppF ABC-type oligopep 94.7 0.078 1.7E-06 51.8 6.5 118 209-329 39-176 (268)
408 KOG1532 GTPase XAB1, interacts 94.7 0.038 8.2E-07 53.4 4.3 32 208-239 18-49 (366)
409 PF06068 TIP49: TIP49 C-termin 94.7 0.049 1.1E-06 55.5 5.3 55 184-238 22-79 (398)
410 cd00071 GMPK Guanosine monopho 94.7 0.02 4.3E-07 50.8 2.3 25 211-235 1-25 (137)
411 PF06309 Torsin: Torsin; Inte 94.7 0.15 3.3E-06 43.9 7.5 46 187-232 26-76 (127)
412 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.043 9.3E-07 55.8 4.8 52 185-236 60-115 (358)
413 PRK10923 glnG nitrogen regulat 94.6 0.1 2.2E-06 56.9 8.1 47 186-232 138-184 (469)
414 PRK10751 molybdopterin-guanine 94.6 0.042 9.1E-07 50.6 4.2 28 208-235 5-32 (173)
415 TIGR02239 recomb_RAD51 DNA rep 94.6 0.13 2.9E-06 52.5 8.3 37 196-232 83-119 (316)
416 cd01672 TMPK Thymidine monopho 94.6 0.081 1.8E-06 50.0 6.5 25 211-235 2-26 (200)
417 TIGR02525 plasmid_TraJ plasmid 94.6 0.074 1.6E-06 55.4 6.5 94 210-306 150-246 (372)
418 PRK12339 2-phosphoglycerate ki 94.6 0.033 7.1E-07 52.8 3.6 25 209-233 3-27 (197)
419 TIGR02788 VirB11 P-type DNA tr 94.6 0.049 1.1E-06 55.7 5.1 91 209-303 144-236 (308)
420 PRK08533 flagellar accessory p 94.6 0.077 1.7E-06 51.7 6.3 37 208-244 23-59 (230)
421 PHA02244 ATPase-like protein 94.6 0.05 1.1E-06 55.9 5.1 47 184-234 94-144 (383)
422 PRK00409 recombination and DNA 94.6 0.12 2.5E-06 59.6 8.6 176 208-404 326-526 (782)
423 KOG2739 Leucine-rich acidic nu 94.5 0.021 4.5E-07 55.0 2.1 67 542-608 59-131 (260)
424 cd00464 SK Shikimate kinase (S 94.5 0.028 6.2E-07 50.8 3.0 22 212-233 2-23 (154)
425 COG1419 FlhF Flagellar GTP-bin 94.5 0.2 4.4E-06 51.8 9.3 25 209-233 203-227 (407)
426 TIGR00041 DTMP_kinase thymidyl 94.5 0.094 2E-06 49.5 6.6 26 210-235 4-29 (195)
427 PRK13949 shikimate kinase; Pro 94.5 0.029 6.3E-07 51.8 2.9 24 211-234 3-26 (169)
428 KOG0652 26S proteasome regulat 94.5 0.84 1.8E-05 44.1 12.5 50 186-235 171-231 (424)
429 PF00006 ATP-synt_ab: ATP synt 94.5 0.058 1.2E-06 51.7 5.0 80 210-295 16-115 (215)
430 PRK15453 phosphoribulokinase; 94.4 0.062 1.3E-06 53.2 5.2 29 207-235 3-31 (290)
431 PRK12727 flagellar biosynthesi 94.4 0.054 1.2E-06 58.3 5.1 28 209-236 350-377 (559)
432 TIGR03263 guanyl_kin guanylate 94.4 0.029 6.2E-07 52.4 2.7 23 210-232 2-24 (180)
433 PF00406 ADK: Adenylate kinase 94.3 0.12 2.6E-06 46.6 6.7 20 214-233 1-20 (151)
434 PRK05917 DNA polymerase III su 94.3 0.61 1.3E-05 46.7 12.1 123 196-340 7-154 (290)
435 PRK13975 thymidylate kinase; P 94.3 0.039 8.4E-07 52.3 3.6 26 210-235 3-28 (196)
436 PRK13948 shikimate kinase; Pro 94.3 0.035 7.6E-07 51.8 3.1 27 208-234 9-35 (182)
437 TIGR00073 hypB hydrogenase acc 94.3 0.06 1.3E-06 51.5 4.9 30 206-235 19-48 (207)
438 TIGR01313 therm_gnt_kin carboh 94.3 0.029 6.4E-07 51.4 2.5 22 212-233 1-22 (163)
439 TIGR02533 type_II_gspE general 94.3 0.091 2E-06 57.0 6.7 106 189-306 224-332 (486)
440 PRK09280 F0F1 ATP synthase sub 94.3 0.2 4.2E-06 53.4 8.9 85 209-295 144-248 (463)
441 TIGR00764 lon_rel lon-related 94.3 0.083 1.8E-06 59.0 6.4 56 185-244 17-73 (608)
442 KOG0927 Predicted transporter 94.3 1.1 2.4E-05 48.0 14.1 239 60-322 258-565 (614)
443 PRK14530 adenylate kinase; Pro 94.3 0.036 7.8E-07 53.4 3.2 23 211-233 5-27 (215)
444 COG0194 Gmk Guanylate kinase [ 94.2 0.044 9.6E-07 50.3 3.5 25 209-233 4-28 (191)
445 TIGR03880 KaiC_arch_3 KaiC dom 94.2 0.16 3.6E-06 49.1 7.8 48 197-244 4-51 (224)
446 PRK04301 radA DNA repair and r 94.2 0.12 2.7E-06 53.0 7.2 49 196-244 89-143 (317)
447 PRK14737 gmk guanylate kinase; 94.2 0.039 8.4E-07 51.8 3.2 26 208-233 3-28 (186)
448 COG3640 CooC CO dehydrogenase 94.2 0.082 1.8E-06 50.3 5.3 34 211-244 2-35 (255)
449 PRK08506 replicative DNA helic 94.2 0.42 9E-06 51.9 11.6 72 188-266 172-243 (472)
450 COG0714 MoxR-like ATPases [Gen 94.2 0.059 1.3E-06 55.7 4.8 48 186-237 24-71 (329)
451 KOG3347 Predicted nucleotide k 94.2 0.036 7.7E-07 48.7 2.6 24 209-232 7-30 (176)
452 PRK12678 transcription termina 94.2 0.1 2.2E-06 56.4 6.6 86 209-296 416-514 (672)
453 PRK06731 flhF flagellar biosyn 94.2 1.4 3.1E-05 43.8 14.3 36 209-244 75-110 (270)
454 PRK13946 shikimate kinase; Pro 94.2 0.035 7.6E-07 52.1 2.9 25 209-233 10-34 (184)
455 COG0378 HypB Ni2+-binding GTPa 94.1 0.093 2E-06 48.5 5.4 37 209-245 13-49 (202)
456 COG2019 AdkA Archaeal adenylat 94.1 0.048 1E-06 48.9 3.4 25 209-233 4-28 (189)
457 cd00046 DEXDc DEAD-like helica 94.1 0.28 6.1E-06 42.7 8.5 34 211-244 2-37 (144)
458 PRK00300 gmk guanylate kinase; 94.1 0.041 9E-07 52.5 3.3 25 209-233 5-29 (205)
459 PRK13768 GTPase; Provisional 94.1 0.075 1.6E-06 52.6 5.2 34 210-243 3-36 (253)
460 PLN02318 phosphoribulokinase/u 94.1 0.062 1.3E-06 58.5 4.7 33 201-233 57-89 (656)
461 PF13521 AAA_28: AAA domain; P 94.1 0.043 9.3E-07 50.3 3.2 21 212-232 2-22 (163)
462 PRK12597 F0F1 ATP synthase sub 94.1 0.22 4.7E-06 53.3 8.8 84 209-295 143-247 (461)
463 smart00534 MUTSac ATPase domai 94.1 0.076 1.6E-06 49.8 4.9 21 211-231 1-21 (185)
464 KOG4579 Leucine-rich repeat (L 94.0 0.013 2.8E-07 50.9 -0.4 83 523-611 55-141 (177)
465 PRK14493 putative bifunctional 94.0 0.071 1.5E-06 53.2 4.7 34 210-244 2-35 (274)
466 PRK05537 bifunctional sulfate 94.0 0.08 1.7E-06 58.6 5.6 50 186-235 369-418 (568)
467 TIGR00176 mobB molybdopterin-g 93.9 0.069 1.5E-06 48.5 4.2 26 211-236 1-26 (155)
468 PRK05342 clpX ATP-dependent pr 93.9 0.067 1.5E-06 56.6 4.7 49 186-234 71-133 (412)
469 PF08477 Miro: Miro-like prote 93.9 0.048 1E-06 46.8 3.0 21 212-232 2-22 (119)
470 PRK05057 aroK shikimate kinase 93.9 0.044 9.5E-07 50.8 3.0 24 210-233 5-28 (172)
471 KOG4237 Extracellular matrix p 93.9 0.021 4.6E-07 58.0 0.9 67 539-608 265-337 (498)
472 TIGR00750 lao LAO/AO transport 93.9 0.12 2.7E-06 52.5 6.5 31 206-236 31-61 (300)
473 PLN02200 adenylate kinase fami 93.9 0.054 1.2E-06 52.9 3.6 25 209-233 43-67 (234)
474 TIGR01039 atpD ATP synthase, F 93.9 0.28 6E-06 52.2 9.1 85 209-295 143-247 (461)
475 PRK15387 E3 ubiquitin-protein 93.9 0.057 1.2E-06 61.5 4.2 16 573-588 342-357 (788)
476 PF03193 DUF258: Protein of un 93.9 0.078 1.7E-06 48.1 4.3 35 193-232 24-58 (161)
477 PRK10416 signal recognition pa 93.9 0.095 2.1E-06 53.6 5.5 29 208-236 113-141 (318)
478 PF02367 UPF0079: Uncharacteri 93.9 0.089 1.9E-06 45.4 4.5 26 208-233 14-39 (123)
479 PRK04182 cytidylate kinase; Pr 93.8 0.047 1E-06 50.7 3.1 23 211-233 2-24 (180)
480 PRK10875 recD exonuclease V su 93.8 0.39 8.4E-06 53.6 10.6 26 210-235 168-193 (615)
481 PHA02774 E1; Provisional 93.8 0.22 4.7E-06 54.1 8.3 40 194-234 420-459 (613)
482 TIGR01447 recD exodeoxyribonuc 93.8 0.33 7.2E-06 53.9 10.0 26 210-235 161-186 (586)
483 PF03029 ATP_bind_1: Conserved 93.8 0.063 1.4E-06 52.5 3.9 24 214-237 1-24 (238)
484 cd00984 DnaB_C DnaB helicase C 93.8 0.23 5E-06 48.7 8.0 51 208-264 12-63 (242)
485 TIGR02173 cyt_kin_arch cytidyl 93.8 0.055 1.2E-06 49.8 3.3 23 211-233 2-24 (171)
486 PRK06761 hypothetical protein; 93.7 0.071 1.5E-06 53.2 4.2 27 210-236 4-30 (282)
487 PRK10078 ribose 1,5-bisphospho 93.7 0.05 1.1E-06 51.1 3.0 24 210-233 3-26 (186)
488 PRK00698 tmk thymidylate kinas 93.7 0.16 3.5E-06 48.3 6.6 26 210-235 4-29 (205)
489 PRK15370 E3 ubiquitin-protein 93.7 0.064 1.4E-06 61.2 4.2 82 521-612 199-281 (754)
490 TIGR00554 panK_bact pantothena 93.7 0.064 1.4E-06 53.9 3.7 28 207-234 60-87 (290)
491 PF12775 AAA_7: P-loop contain 93.6 0.033 7.2E-07 55.6 1.7 24 210-233 34-57 (272)
492 cd00820 PEPCK_HprK Phosphoenol 93.6 0.061 1.3E-06 45.1 3.0 22 209-230 15-36 (107)
493 PRK07276 DNA polymerase III su 93.6 4.7 0.0001 40.5 16.9 67 284-351 103-173 (290)
494 PRK03731 aroL shikimate kinase 93.6 0.055 1.2E-06 50.0 3.0 23 211-233 4-26 (171)
495 cd01135 V_A-ATPase_B V/A-type 93.6 0.3 6.4E-06 48.4 8.2 85 209-296 69-177 (276)
496 TIGR02236 recomb_radA DNA repa 93.6 0.21 4.5E-06 51.1 7.5 48 197-244 83-136 (310)
497 smart00072 GuKc Guanylate kina 93.6 0.051 1.1E-06 51.0 2.8 28 210-237 3-30 (184)
498 COG0703 AroK Shikimate kinase 93.6 0.056 1.2E-06 49.3 2.9 28 210-237 3-30 (172)
499 COG0396 sufC Cysteine desulfur 93.6 0.22 4.8E-06 47.3 6.9 60 276-335 153-216 (251)
500 cd01983 Fer4_NifH The Fer4_Nif 93.6 0.098 2.1E-06 42.6 4.2 33 211-244 1-33 (99)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-97 Score=878.08 Aligned_cols=610 Identities=38% Similarity=0.618 Sum_probs=549.0
Q ss_pred CCCCCCCCCCCCCCcccEEEcCccccCCCchHHHHHHHHhhCCCceeecCCcCCCCcchHHHHHHHHhcceEEEEecCCc
Q 037173 1 MASSSSCPPRNAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDDQLIRGDNISRSLLDTIEASSISIIIFSERY 80 (617)
Q Consensus 1 ~~~~~~~~~~~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y 80 (617)
|++|||+ ++.++|||||||+|+|+|++|++||+++|+++||.+|.|+++++|+.|.+++.+||++|++.|||||++|
T Consensus 1 ~~~~~~~---~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 1 MASSSSS---SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CCCCCCC---CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 6666543 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHhhhCCCEEEEEEeecCCCccccccccchhhHHHhhhhC-hhHHHHHHHHHHhhhccCCcCCCCC
Q 037173 81 ASSRWCLDELLKILECKHDYGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGERY-PEKMQRWGNALTEAANLSGFDSHVI 159 (617)
Q Consensus 81 ~~s~~c~~El~~~~~~~~~~~~~vipi~~~v~p~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~ 159 (617)
++|.||++||++|++|+++.+++|+||||+|+|++||+|+|.||++|.++..+. .+++++|++||.+++++.||++..+
T Consensus 78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCC
Confidence 999999999999999999999999999999999999999999999999987764 4789999999999999999999999
Q ss_pred chhhHHHHHHHhhhhccccccccccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCc
Q 037173 160 RPESKLIEAIANGVLKRLDATFQSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG 239 (617)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (617)
.+|+++|++|+++|.+++..+++...+++|||+.+++++..+|..+.+++++|+|+||||+||||||+.+|+++..+|+.
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 99999999999999999998888888999999999999999998777789999999999999999999999999999999
Q ss_pred eEEEEec--hhhh---c------cCCHHHHHHHHHHHHhcCC-CCC-CHHHHHHHHcCCCeEEEEeCCCCHHhHHHHHcc
Q 037173 240 SYFALDV--REAE---E------TGRIKDLQKELLSKLLNDG-NAR-NVESQLNRLARKKVLLVFDDVNHPGQIESLIGC 306 (617)
Q Consensus 240 ~~~~~~~--~~~~---~------~~~~~~l~~~l~~~l~~~~-~~~-~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 306 (617)
.+|+... .... . ......++.+++..+.... ... ....++++++++|+||||||||+..+|+.+...
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~ 317 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQ 317 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhh
Confidence 9887531 1100 0 0112345566666655432 222 457888999999999999999999999999887
Q ss_pred cCCCCCCcEEEEEcCCcccccccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 307 LDELASGSRVIITTRDKQVLENCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 307 l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
..+.++|++||||||+..++..++..++|+++.|+.++|++||+++||+...+++.+.+++++|+++|+|+||||+++|+
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs 397 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGS 397 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 77778999999999999998877778899999999999999999999988777778899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHccCCCchHHHHHHHcHhcCCh-hHHHHHhhhhcccCCcCHHHHHHhHhhcCCchHHhHHHHhh
Q 037173 387 HLCGRSKEVWESAMRKLEIIPHVDILKVLKISYDSLDD-SQKNVFLDIACLLEGEHRDEVTSFFDASGFQAKIELSVLED 465 (617)
Q Consensus 387 ~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~fp~~~~~~~L~~~w~~~g~~~~~~l~~L~~ 465 (617)
.|++++..+|+.+++++....+.++..+|+.||+.|++ .+|.||+++|+|+.+.+.+.+..++...++.++..++.|++
T Consensus 398 ~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ 477 (1153)
T PLN03210 398 YLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVD 477 (1153)
T ss_pred HHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHh
Confidence 99999999999999999988888999999999999987 58999999999999999988888888888888889999999
Q ss_pred CCCceEeCCEEEecHHHHHHHHHHHhhcCCCCCCCeeeccccccHHHHHhcCCCCCceEEEEeeccccccccccChhhhc
Q 037173 466 KSLITCLNNQIRMHDLLRDMGREIVRNESIDLPGKRSRLWYHKDIDEVLKKNTGTEAIKGISLDMNKVNRKIHMDSFAFS 545 (617)
Q Consensus 466 ~sLi~~~~~~~~mHdlv~~~a~~~~~~e~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 545 (617)
+|||+...+++.|||++|+||++++++++ ..|++++++|.+.++.+++..++++.++++|+++..... ...+....|.
T Consensus 478 ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~-~~~i~~~aF~ 555 (1153)
T PLN03210 478 KSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID-ELHIHENAFK 555 (1153)
T ss_pred cCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-eeeecHHHHh
Confidence 99999998999999999999999999987 678999999999999999999999999999999988775 6778889999
Q ss_pred CCCCceEEEEecccC----ccccccCCCC--CCCCceEEEecCCCCccc--ccccCCeeEEecCCCCccccCCccccc
Q 037173 546 KMPKLRFLKFYGFEN----KCMVSHLDGV--LFAELRHLEWQQYPLKTL--NIHAENLVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 546 ~~~~LrvL~l~~~~~----~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~l~~t~i~~Lp~~i~~L 615 (617)
+|++|++|++++... .....+|+++ .+.+||+|+|.+++++.+ .+.+.+|++|+|++++|++||++++.|
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 999999999976532 1234688888 667899999999999999 678999999999999999999988654
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-60 Score=531.64 Aligned_cols=413 Identities=24% Similarity=0.328 Sum_probs=352.6
Q ss_pred ccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH---hhhccCceEEEEechhhhccCCHHHHHHHHHHH
Q 037173 189 VGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK---ISRCFEGSYFALDVREAEETGRIKDLQKELLSK 265 (617)
Q Consensus 189 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (617)
||.+..++++.+.|..++. .+++|+||||+||||||++++|+ +..+|+.++|+. +|+.+....++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999974443 89999999999999999999997 568899999999 99999999999999998
Q ss_pred HhcCCCCC-------CHHHHHHHHcCCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcccccc-cCcceEEEe
Q 037173 266 LLNDGNAR-------NVESQLNRLARKKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLEN-CWVNQIYRM 337 (617)
Q Consensus 266 l~~~~~~~-------~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~-~~~~~~~~l 337 (617)
++..+... -...+.+.|+++|++|||||||+..+|+.+..+++...+||+|++|||+..|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 87743322 1267778889999999999999999999999999988889999999999999998 788889999
Q ss_pred ccCChhHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHccCCchHHHHHhhhhCCC-CHHHHHHHHHHHccC-------CC
Q 037173 338 KELVDVDAHKLFCQCAFRGG-HLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGR-SKEVWESAMRKLEII-------PH 408 (617)
Q Consensus 338 ~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~-~~~~w~~~l~~l~~~-------~~ 408 (617)
+.|+.+|||+||++.+|... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+...+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3334589999999999999999999999999986 577999999987654 14
Q ss_pred chHHHHHHHcHhcCChhHHHHHhhhhcccCC--cCHHHHHHhHhhcCCc------------hHHhHHHHhhCCCceEeC-
Q 037173 409 VDILKVLKISYDSLDDSQKNVFLDIACLLEG--EHRDEVTSFFDASGFQ------------AKIELSVLEDKSLITCLN- 473 (617)
Q Consensus 409 ~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~--~~~~~L~~~w~~~g~~------------~~~~l~~L~~~sLi~~~~- 473 (617)
+.+..++..||+.||++.|.||+|||+||++ |+.+.|+.+|+++||+ +..++.+|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 5689999999999998899999999999999 9999999999999974 456899999999999874
Q ss_pred ----CEEEecHHHHHHHHHHHh-----hcCCC--------------CCCCeeeccccccHHHHHhcCCCCCceEEEEeec
Q 037173 474 ----NQIRMHDLLRDMGREIVR-----NESID--------------LPGKRSRLWYHKDIDEVLKKNTGTEAIKGISLDM 530 (617)
Q Consensus 474 ----~~~~mHdlv~~~a~~~~~-----~e~~~--------------~~~~~~rl~~~~~~~~~~~~~~~~~~~~~l~l~~ 530 (617)
..|+|||+|||+|.++++ .++.. .+...+|...+......+......++++++.+..
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 679999999999999999 44311 1223455555555555555566666788887765
Q ss_pred cccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCC-c
Q 037173 531 NKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAK-L 605 (617)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~-i 605 (617)
.... ...++..+|..|+.||||||++|. ...+||++| .|.|||||+|++|.|+.| +.+|+.|++||+..+. +
T Consensus 555 n~~~-l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 555 NSDW-LLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred cchh-hhhcCHHHHhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 5421 456778899999999999999764 445999999 999999999999999999 8899999999999884 3
Q ss_pred cccCC
Q 037173 606 NNFGM 610 (617)
Q Consensus 606 ~~Lp~ 610 (617)
...|.
T Consensus 632 ~~~~~ 636 (889)
T KOG4658|consen 632 ESIPG 636 (889)
T ss_pred ccccc
Confidence 33333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.6e-40 Score=334.94 Aligned_cols=263 Identities=28% Similarity=0.449 Sum_probs=210.9
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH--hhhccCceEEEEechhhhccCCHHHHHHHHHHHHhc
Q 037173 191 VAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK--ISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLN 268 (617)
Q Consensus 191 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 268 (617)
|+.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+. .+.......++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999865678999999999999999999999998 888999999998 55556668888999998877
Q ss_pred CCCC----CC----HHHHHHHHcCCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcccccccCc-ceEEEecc
Q 037173 269 DGNA----RN----VESQLNRLARKKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLENCWV-NQIYRMKE 339 (617)
Q Consensus 269 ~~~~----~~----~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~-~~~~~l~~ 339 (617)
.... .+ ...+.+.|+++++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6321 12 377788889999999999999999998888877776789999999999988876654 67899999
Q ss_pred CChhHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHccCCchHHHHHhhhhCCC-CHHHHHHHHHHHccCC------CchH
Q 037173 340 LVDVDAHKLFCQCAFRGG-HLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGR-SKEVWESAMRKLEIIP------HVDI 411 (617)
Q Consensus 340 L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~-~~~~w~~~l~~l~~~~------~~~i 411 (617)
|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|..+++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997654 3344556789999999999999999999999543 6788999888765432 4679
Q ss_pred HHHHHHcHhcCChhHHHHHhhhhcccCC--cCHHHHHHhHhhcCCchH
Q 037173 412 LKVLKISYDSLDDSQKNVFLDIACLLEG--EHRDEVTSFFDASGFQAK 457 (617)
Q Consensus 412 ~~~l~~sy~~L~~~~k~~fl~la~fp~~--~~~~~L~~~w~~~g~~~~ 457 (617)
..++..||+.||+++|+||++||+||.+ ++.+.++++|.++|++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999998 789999999999998754
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=290.23 Aligned_cols=157 Identities=31% Similarity=0.491 Sum_probs=141.8
Q ss_pred CCCCCCCcccEEEcCccccCCCchHHHHHHHHhhCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhh
Q 037173 8 PPRNAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWC 86 (617)
Q Consensus 8 ~~~~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c 86 (617)
+|++..++|||||||+|+|++++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|++.|||||++|++|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 3456678899999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCEEEEEEeecCCCccccc-cccchhhHHHhhhhChhHHHHHHHHHHhhhccCCcCCCC-CchhhH
Q 037173 87 LDELLKILECKHDYGQIVIPVFYRVDPSHVRWK-TGTFGDYFSELGERYPEKMQRWGNALTEAANLSGFDSHV-IRPESK 164 (617)
Q Consensus 87 ~~El~~~~~~~~~~~~~vipi~~~v~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~e~~ 164 (617)
++||++|+++. ..|+||||+|+|++||+| .|. ...+++++|+.||.+++++.|+.+.. .++|++
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e 164 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSE 164 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHH
Confidence 99999999864 479999999999999997 443 13478999999999999999987653 478999
Q ss_pred HHHHHHhhhhcccc
Q 037173 165 LIEAIANGVLKRLD 178 (617)
Q Consensus 165 ~i~~i~~~v~~~l~ 178 (617)
++++|+..|.+++-
T Consensus 165 ~i~~iv~~v~k~l~ 178 (187)
T PLN03194 165 VVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977653
No 5
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.82 E-value=5.4e-20 Score=165.66 Aligned_cols=134 Identities=40% Similarity=0.648 Sum_probs=112.9
Q ss_pred cccEEEcCcc-ccCCCchHHHHHHHHhhCCCceeecCCcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhHHHHHHH
Q 037173 15 LHDVFLSFRG-EDTRDNFTSHLHYVLSLKGIKTFVDDQLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCLDELLKI 93 (617)
Q Consensus 15 ~~dvFisy~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 93 (617)
.|||||||++ ++....|+.+|...|+..|+.+|.|+....|... .+|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 4455789999999999999999999844333333 4999999999999999999999999999999999
Q ss_pred HHHhhh-CCCEEEEEEeecCCCccccccccchhhHHHhhhhChhHH--HHHHHHHHhhh
Q 037173 94 LECKHD-YGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGERYPEKM--QRWGNALTEAA 149 (617)
Q Consensus 94 ~~~~~~-~~~~vipi~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 149 (617)
..+... ...+||||+++..|..+..+.+.++.++..+..++.+.. ..|+.++..+.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 988754 567999999999898899999999999988755555444 58988876654
No 6
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=1.1e-20 Score=169.91 Aligned_cols=129 Identities=34% Similarity=0.557 Sum_probs=110.0
Q ss_pred EEEcCccccCCCchHHHHHHHHhhC--CCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhHHHHHHHH
Q 037173 18 VFLSFRGEDTRDNFTSHLHYVLSLK--GIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCLDELLKIL 94 (617)
Q Consensus 18 vFisy~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 94 (617)
|||||++.+.+..|+.+|..+|++. |+++|+++ |+.+|..+.++|.++|++|+++|+|+|++|++|+||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999444556899999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCC--CEEEEEEeecCCCccc-cccccchhhHHHhhhhCh-----hHHHHHHHHHH
Q 037173 95 ECKHDYG--QIVIPVFYRVDPSHVR-WKTGTFGDYFSELGERYP-----EKMQRWGNALT 146 (617)
Q Consensus 95 ~~~~~~~--~~vipi~~~v~p~~v~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ 146 (617)
++....+ ..|+|+|+++.+++++ .+.+.++..+.....-.+ .+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9996655 7999999999999999 688888887766544332 45788888764
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.66 E-value=2.7e-14 Score=168.23 Aligned_cols=291 Identities=15% Similarity=0.142 Sum_probs=190.1
Q ss_pred ccccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh-ccCCHHHHH
Q 037173 181 FQSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE-ETGRIKDLQ 259 (617)
Q Consensus 181 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~ 259 (617)
+|..+..+|-|..-++.+.. ....+++.|+|++|.||||++.++.++ ++.++|+. .. ...+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~----l~~~d~~~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS----LDESDNQPERFA 75 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe----cCcccCCHHHHH
Confidence 45566788999877766653 235789999999999999999998864 23688986 33 233445555
Q ss_pred HHHHHHHhcCCCC--------------CCH----HHHHHHHc--CCCeEEEEeCCCCH--HhHH-HHHcccCCCCCCcEE
Q 037173 260 KELLSKLLNDGNA--------------RNV----ESQLNRLA--RKKVLLVFDDVNHP--GQIE-SLIGCLDELASGSRV 316 (617)
Q Consensus 260 ~~l~~~l~~~~~~--------------~~~----~~l~~~L~--~k~~LlVLDdv~~~--~~~~-~l~~~l~~~~~gs~I 316 (617)
..++..+...... ... ..+...+. +.+++|||||+... .... .+...+....++.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 5665555321100 111 22333332 67999999999532 2222 222222333567789
Q ss_pred EEEcCCcccccc--c-CcceEEEec----cCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhC
Q 037173 317 IITTRDKQVLEN--C-WVNQIYRMK----ELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLC 389 (617)
Q Consensus 317 lvTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~ 389 (617)
|||||...-... . ......++. +|+.+|+.++|...... . -..+.+.+|.+.|+|+|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~---~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--P---IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--C---CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999998532211 0 112344555 99999999999876521 1 2345678999999999999999888775
Q ss_pred CCCHHHHHHHHHHHccCCCchHHHHHHH-cHhcCChhHHHHHhhhhcccCCcCHHHHHHhHhhcCCchHHhHHHHhhCCC
Q 037173 390 GRSKEVWESAMRKLEIIPHVDILKVLKI-SYDSLDDSQKNVFLDIACLLEGEHRDEVTSFFDASGFQAKIELSVLEDKSL 468 (617)
Q Consensus 390 ~~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~la~fp~~~~~~~L~~~w~~~g~~~~~~l~~L~~~sL 468 (617)
..... .......+...+...+...+.. .++.||++.+.++..+|+++ .++.+.+..+.... .....+++|.+.++
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l 306 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGL 306 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCC
Confidence 43210 0111122222223456665544 48999999999999999986 67877666665422 45788999999999
Q ss_pred ceEe----CCEEEecHHHHHHHHHHHhhc
Q 037173 469 ITCL----NNQIRMHDLLRDMGREIVRNE 493 (617)
Q Consensus 469 i~~~----~~~~~mHdlv~~~a~~~~~~e 493 (617)
+... ...|+.|++++++.+.....+
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 7643 237999999999999887544
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.63 E-value=9.4e-17 Score=135.91 Aligned_cols=87 Identities=32% Similarity=0.555 Sum_probs=75.9
Q ss_pred EEEcCccccCCCchHHHHHHHHhhCCCceeecCCcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhHHHHHHHHHHh
Q 037173 18 VFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDDQLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCLDELLKILECK 97 (617)
Q Consensus 18 vFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~ 97 (617)
|||||+++| +.||.+|.+.|+.+|+++|+|.++.+|+.+.+.|.++|++|+.+|+++|++|+.|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6799999999999999999999999999999999999999999999999999999999999998843
Q ss_pred hhCCCEEEEEEee
Q 037173 98 HDYGQIVIPVFYR 110 (617)
Q Consensus 98 ~~~~~~vipi~~~ 110 (617)
.+..|+||.++
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 34579999865
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.2e-10 Score=123.85 Aligned_cols=279 Identities=17% Similarity=0.110 Sum_probs=165.8
Q ss_pred ccCCCcccchhhHHHHHHHhhhc--CCCeEEEEEeccCCChhhHHHHHHHHHhhhccC--ceEEEEechhhhccCCHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIR--SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE--GSYFALDVREAEETGRIKDL 258 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l 258 (617)
..|+.|+||++++++|...+... ....+.+.|+|++|+|||++++.++++...... ..+++. .........+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHH
Confidence 35678999999999999998532 233456789999999999999999998765542 234443 2233456677
Q ss_pred HHHHHHHHhcC-CCC--CCH----HHHHHHHc--CCCeEEEEeCCCCH------HhHHHHHcccCCCC-CCcEEEEEcCC
Q 037173 259 QKELLSKLLND-GNA--RNV----ESQLNRLA--RKKVLLVFDDVNHP------GQIESLIGCLDELA-SGSRVIITTRD 322 (617)
Q Consensus 259 ~~~l~~~l~~~-~~~--~~~----~~l~~~L~--~k~~LlVLDdv~~~------~~~~~l~~~l~~~~-~gs~IlvTTR~ 322 (617)
+..++.++... .+. .+. ..+.+.+. +++.+||||+++.. +.+..+........ .+..+|.++..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 88888887652 111 122 44444553 45689999999753 23444443332211 12335666555
Q ss_pred cccccccC-------cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHH----ccCCchHHHHHhhhh---
Q 037173 323 KQVLENCW-------VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKY----AHGVPLALQVLGRHL--- 388 (617)
Q Consensus 323 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~----~~G~PLai~~~a~~L--- 388 (617)
..+..... ....+.+++++.++..+++..++-..-....-..+.++.+++. .|..+.|+..+-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 43322111 1246789999999999999887632111111122334444444 455677776654322
Q ss_pred --CCC---CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhccc----CCcCHHHHHHh----HhhcCC-
Q 037173 389 --CGR---SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLL----EGEHRDEVTSF----FDASGF- 454 (617)
Q Consensus 389 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp----~~~~~~~L~~~----w~~~g~- 454 (617)
.+. +.+....+.+.. -.......+..||.+.|..+..++... ..+....+... ....|.
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 111 345555555544 123345678899999998887766443 22454444422 111232
Q ss_pred -----chHHhHHHHhhCCCceEe
Q 037173 455 -----QAKIELSVLEDKSLITCL 472 (617)
Q Consensus 455 -----~~~~~l~~L~~~sLi~~~ 472 (617)
....++..|.+.|+|...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 124589999999999864
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.37 E-value=1e-10 Score=126.97 Aligned_cols=288 Identities=16% Similarity=0.158 Sum_probs=190.7
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh-ccCCHHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE-ETGRIKDLQK 260 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~~ 260 (617)
|..+.+.|-|..-++.|.. ..+.+.+.|..|+|.|||||+.+++.. ...-..+.|.. .+ ...+...+..
T Consensus 15 P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls----lde~dndp~rF~~ 84 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLS----LDESDNDPARFLS 84 (894)
T ss_pred CCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee----cCCccCCHHHHHH
Confidence 4557778888876666654 346799999999999999999999884 33445688887 33 3456677777
Q ss_pred HHHHHHhcCCCCC--------------CHH----HHHHHHc--CCCeEEEEeCCC---CH---HhHHHHHcccCCCCCCc
Q 037173 261 ELLSKLLNDGNAR--------------NVE----SQLNRLA--RKKVLLVFDDVN---HP---GQIESLIGCLDELASGS 314 (617)
Q Consensus 261 ~l~~~l~~~~~~~--------------~~~----~l~~~L~--~k~~LlVLDdv~---~~---~~~~~l~~~l~~~~~gs 314 (617)
.++..+....+.. ++. .+...+. .++.++||||.. ++ ..++.+... ..++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCe
Confidence 7777765331111 122 2333332 468999999984 22 234444433 35788
Q ss_pred EEEEEcCCccccccc---CcceEEEec----cCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhh
Q 037173 315 RVIITTRDKQVLENC---WVNQIYRMK----ELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRH 387 (617)
Q Consensus 315 ~IlvTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~ 387 (617)
.++||||+..-.... -.+..+++. .++.+|+.++|..... .+-....++.+.+..+|-+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 999999987432211 012233333 5899999999987651 1223455889999999999999999888
Q ss_pred hCCC-CHHHHHHHHHHHccCCCchHHH-HHHHcHhcCChhHHHHHhhhhcccCCcCHHHHHHhHhhcCCchHHhHHHHhh
Q 037173 388 LCGR-SKEVWESAMRKLEIIPHVDILK-VLKISYDSLDDSQKNVFLDIACLLEGEHRDEVTSFFDASGFQAKIELSVLED 465 (617)
Q Consensus 388 L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~la~fp~~~~~~~L~~~w~~~g~~~~~~l~~L~~ 465 (617)
+++. +.+.-.. .+... ..-+.+ ...--++.||+++|..++-+|+++. +.-+....+... .....-+++|.+
T Consensus 237 ~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEELER 309 (894)
T ss_pred ccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHHHh
Confidence 8733 3322111 11111 112222 3455689999999999999999864 333333333322 134566999999
Q ss_pred CCCceEe----CCEEEecHHHHHHHHHHHhhcC
Q 037173 466 KSLITCL----NNQIRMHDLLRDMGREIVRNES 494 (617)
Q Consensus 466 ~sLi~~~----~~~~~mHdlv~~~a~~~~~~e~ 494 (617)
++|+-.. ++.|+.|.+..+|.+.....+.
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9998854 7789999999999998876653
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.35 E-value=1.3e-11 Score=127.34 Aligned_cols=257 Identities=15% Similarity=0.127 Sum_probs=156.6
Q ss_pred ccCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
....+|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.....+. +.. .... .... .+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~---~~~~-~l 93 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL---EKPG-DL 93 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc---cChH-HH
Confidence 4457799999999999888853 2334567889999999999999999998653321 111 1001 1111 11
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH--HhHHHHHcccC-------------------CCCCCcEEEE
Q 037173 260 KELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP--GQIESLIGCLD-------------------ELASGSRVII 318 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~-------------------~~~~gs~Ilv 318 (617)
..++. .+ +..-+|++|+++.. ...+.+...+. ...+.+-|..
T Consensus 94 ~~~l~----------------~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 94 AAILT----------------NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred HHHHH----------------hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 11111 11 23457777877532 11122211110 0022345566
Q ss_pred EcCCccccccc--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHH
Q 037173 319 TTRDKQVLENC--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVW 396 (617)
Q Consensus 319 TTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w 396 (617)
|++...+.... .....+++++++.++..+++...+.... .....+.+..|++.|+|.|-.+..+...+. .|
T Consensus 157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~ 229 (328)
T PRK00080 157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVR-----DF 229 (328)
T ss_pred cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HH
Confidence 66654433221 1235689999999999999998874322 223456789999999999965555444321 11
Q ss_pred HHHHHHHccCCC---chHHHHHHHcHhcCChhHHHHHh-hhhcccCC-cCHHHHHHhHhhcCCchHHhHH-HHhhCCCce
Q 037173 397 ESAMRKLEIIPH---VDILKVLKISYDSLDDSQKNVFL-DIACLLEG-EHRDEVTSFFDASGFQAKIELS-VLEDKSLIT 470 (617)
Q Consensus 397 ~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~fp~~-~~~~~L~~~w~~~g~~~~~~l~-~L~~~sLi~ 470 (617)
.... .-..... ......+...+..|++..+..+. .+..|+.+ +..+.+...+..+....++.++ .|++.+||+
T Consensus 230 a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 230 AQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcc
Confidence 1110 0000111 12233455667889988888885 66677665 8899999998887777787888 999999997
Q ss_pred Ee
Q 037173 471 CL 472 (617)
Q Consensus 471 ~~ 472 (617)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 54
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.31 E-value=6.5e-11 Score=135.28 Aligned_cols=301 Identities=15% Similarity=0.201 Sum_probs=185.3
Q ss_pred CcccchhhHHHHHHHhhhc-CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEec-hhhhcc---CCHHHHHHH
Q 037173 187 GLVGVAWRIKEIESLLCIR-SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDV-REAEET---GRIKDLQKE 261 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~-~~~~~~---~~~~~l~~~ 261 (617)
.++||+.+++.|...+... .....++.+.|.+|||||+|+++|...+.+.+ ..++..- .+.... ..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999999988743 34467999999999999999999999866552 2222100 001111 111222222
Q ss_pred HHHHH-------------------hcCCCCC-C----------------------H---------HHHHHHH-cCCCeEE
Q 037173 262 LLSKL-------------------LNDGNAR-N----------------------V---------ESQLNRL-ARKKVLL 289 (617)
Q Consensus 262 l~~~l-------------------~~~~~~~-~----------------------~---------~~l~~~L-~~k~~Ll 289 (617)
+..++ +..+... + . ..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 22222 1110000 0 0 0111111 4569999
Q ss_pred EEeCC-CC-HHh---HHHHHcccCC-CCCCcEEE--EEcCCc--ccccccCcceEEEeccCChhHHHHHHHHhhhcCCCC
Q 037173 290 VFDDV-NH-PGQ---IESLIGCLDE-LASGSRVI--ITTRDK--QVLENCWVNQIYRMKELVDVDAHKLFCQCAFRGGHL 359 (617)
Q Consensus 290 VLDdv-~~-~~~---~~~l~~~l~~-~~~gs~Il--vTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 359 (617)
|+||+ |- ... ++.++..... .-....+. .|.+.. .+.........+.|.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 53 322 3333333220 00011222 222222 111222345789999999999999998877332
Q ss_pred ChhHHHHHHHHHHHccCCchHHHHHhhhhCCC-------CHHHHHHHHHHHccCC-CchHHHHHHHcHhcCChhHHHHHh
Q 037173 360 DASYTEVTRKAIKYAHGVPLALQVLGRHLCGR-------SKEVWESAMRKLEIIP-HVDILKVLKISYDSLDDSQKNVFL 431 (617)
Q Consensus 360 ~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl 431 (617)
.....+..+.|+++..|+|+.+..+-..+... +...|..-...+.... .+++...+....+.||...|+.+.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23345678999999999999999999888653 3344554444443322 233566789999999999999999
Q ss_pred hhhcccCCcCHHHHHHhHhhcCCchHHhHHHHhhCCCceEe---------CCEE---EecHHHHHHHHHHHhh
Q 037173 432 DIACLLEGEHRDEVTSFFDASGFQAKIELSVLEDKSLITCL---------NNQI---RMHDLLRDMGREIVRN 492 (617)
Q Consensus 432 ~la~fp~~~~~~~L~~~w~~~g~~~~~~l~~L~~~sLi~~~---------~~~~---~mHdlv~~~a~~~~~~ 492 (617)
..||+...|+.+.|..++...+......+......++|.+. .... ..|+++|+.|....-+
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999999999999886555444455555556666652 1112 5799999988766543
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.31 E-value=9.5e-11 Score=119.99 Aligned_cols=252 Identities=16% Similarity=0.152 Sum_probs=151.8
Q ss_pred CCcccchhhHHHHHHHhhhc---CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIR---SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
..|+|++..+++|..++... ....+.+.|+|++|+|||+||+.+++.....+ .+... +.......+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~---~~~~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSG---PALEKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEecc---chhcCchhHH-HH
Confidence 46999999999999988631 23355688999999999999999998764332 11110 0001111111 11
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccC-------------------CCCCCcEEEEEcC
Q 037173 263 LSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLD-------------------ELASGSRVIITTR 321 (617)
Q Consensus 263 ~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~-------------------~~~~gs~IlvTTR 321 (617)
+..+ +...+|++|+++. ....+.+...+. ...+.+-|..||+
T Consensus 76 l~~~-----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 76 LTNL-----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHhc-----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 1111 2334666776642 122222221110 0123455566677
Q ss_pred Cccccccc--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHH
Q 037173 322 DKQVLENC--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESA 399 (617)
Q Consensus 322 ~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~ 399 (617)
...+.... .....+.+++++.++..+++...+.... ..-..+.+..|++.|+|.|-.+..++..+ |...
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a 209 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA 209 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH
Confidence 64443321 1235689999999999999998874322 22345678899999999997665554432 1110
Q ss_pred HHHHccC--CC---chHHHHHHHcHhcCChhHHHHHh-hhhcccCC-cCHHHHHHhHhhcCCchHHhHH-HHhhCCCceE
Q 037173 400 MRKLEII--PH---VDILKVLKISYDSLDDSQKNVFL-DIACLLEG-EHRDEVTSFFDASGFQAKIELS-VLEDKSLITC 471 (617)
Q Consensus 400 l~~l~~~--~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~fp~~-~~~~~L~~~w~~~g~~~~~~l~-~L~~~sLi~~ 471 (617)
. ..... .. ......+...|..|++..+..+. .++.+..+ +..+.+...+..+....+..++ .|++++||..
T Consensus 210 ~-~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 210 Q-VRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred H-HcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCccc
Confidence 0 00000 00 11222245567889998887776 55666554 8888999988888878888888 6999999975
Q ss_pred e
Q 037173 472 L 472 (617)
Q Consensus 472 ~ 472 (617)
.
T Consensus 289 ~ 289 (305)
T TIGR00635 289 T 289 (305)
T ss_pred C
Confidence 4
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.30 E-value=1e-11 Score=121.74 Aligned_cols=192 Identities=20% Similarity=0.199 Sum_probs=100.7
Q ss_pred cccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHH------HHH
Q 037173 188 LVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDL------QKE 261 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 261 (617)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999643 34689999999999999999999986443223444432211110 011111 111
Q ss_pred HHHHHh----cCC-------C----CCCHHHHHHHHc--CCCeEEEEeCCCCHH--------hHHHHHcccCC--CCCCc
Q 037173 262 LLSKLL----NDG-------N----ARNVESQLNRLA--RKKVLLVFDDVNHPG--------QIESLIGCLDE--LASGS 314 (617)
Q Consensus 262 l~~~l~----~~~-------~----~~~~~~l~~~L~--~k~~LlVLDdv~~~~--------~~~~l~~~l~~--~~~gs 314 (617)
+...+. ... . ...+..+.+.+. +++++||+||++... ....+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111121 110 0 113455555553 346999999995433 12222222221 12333
Q ss_pred EEEEEcCCcccccc--------cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 315 RVIITTRDKQVLEN--------CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 315 ~IlvTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.+|+++-...+... .+....+.+++|+.+++.+++....-..... +...+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 34444433322221 2233459999999999999999865332111 23456679999999999998864
No 15
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=3.6e-09 Score=111.30 Aligned_cols=279 Identities=19% Similarity=0.173 Sum_probs=162.1
Q ss_pred ccCCCcccchhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC------ceEEEEechhhhccCC
Q 037173 183 SENKGLVGVAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE------GSYFALDVREAEETGR 254 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 254 (617)
..|+.++||++++++|...+.. .....+.+.|+|++|+|||++++.+++.+....+ ..+|+. ......
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCC
Confidence 4456899999999999999863 1233457899999999999999999998654322 234444 223345
Q ss_pred HHHHHHHHHHHHhc---CCCC--CCH----HHHHHHH--cCCCeEEEEeCCCCH-----HhHHHHHccc--CCC-CCCcE
Q 037173 255 IKDLQKELLSKLLN---DGNA--RNV----ESQLNRL--ARKKVLLVFDDVNHP-----GQIESLIGCL--DEL-ASGSR 315 (617)
Q Consensus 255 ~~~l~~~l~~~l~~---~~~~--~~~----~~l~~~L--~~k~~LlVLDdv~~~-----~~~~~l~~~l--~~~-~~gs~ 315 (617)
...++..++.++.. ..+. .+. ..+.+.+ .+++++||||+++.. +.+..+.... ... +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 56777788877742 1111 122 3444445 356789999999754 1233333221 111 12334
Q ss_pred EEEEcCCccccccc-------CcceEEEeccCChhHHHHHHHHhhhc---CCCCChhHHHHHHHHHHHccCCchHH-HHH
Q 037173 316 VIITTRDKQVLENC-------WVNQIYRMKELVDVDAHKLFCQCAFR---GGHLDASYTEVTRKAIKYAHGVPLAL-QVL 384 (617)
Q Consensus 316 IlvTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLai-~~~ 384 (617)
+|.+|......... -....+.+++++.++..+++..++-. .....+...+.+..++..+.|.|-.+ ..+
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45555444321111 01256889999999999999887631 11222333344556677777888543 322
Q ss_pred hhhh-----CC---CCHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcccC----CcCHHHHHHhH---
Q 037173 385 GRHL-----CG---RSKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLLE----GEHRDEVTSFF--- 449 (617)
Q Consensus 385 a~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~----~~~~~~L~~~w--- 449 (617)
-... .+ -+.+....+.+.+. ......++..||.+.+.++..++..-. .+....+....
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 2111 11 13444444444431 234456778999998877766653321 14554444422
Q ss_pred -hhcCC------chHHhHHHHhhCCCceEe
Q 037173 450 -DASGF------QAKIELSVLEDKSLITCL 472 (617)
Q Consensus 450 -~~~g~------~~~~~l~~L~~~sLi~~~ 472 (617)
...|. ....++..|...|||...
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11222 234579999999999975
No 16
>PF05729 NACHT: NACHT domain
Probab=99.15 E-value=4.3e-10 Score=103.91 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=85.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-H
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNR-L 282 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~-L 282 (617)
|++.|+|.+|+||||+++.++.++.... ...+|+. .+..........+...+............ ..+... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAPIE-ELLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhhhH-HHHHHHHH
Confidence 5789999999999999999999865543 2233333 33333322222333333333322211111 112222 2
Q ss_pred cCCCeEEEEeCCCCHHh---------HHHHHcc-cCC-CCCCcEEEEEcCCccc---ccccCcceEEEeccCChhHHHHH
Q 037173 283 ARKKVLLVFDDVNHPGQ---------IESLIGC-LDE-LASGSRVIITTRDKQV---LENCWVNQIYRMKELVDVDAHKL 348 (617)
Q Consensus 283 ~~k~~LlVLDdv~~~~~---------~~~l~~~-l~~-~~~gs~IlvTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 348 (617)
..+++++|+|++++... +..++.. +.. ..++++++||+|.... .........+++.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 67899999999964321 2222222 221 2578999999998765 22233446899999999999999
Q ss_pred HHHhh
Q 037173 349 FCQCA 353 (617)
Q Consensus 349 f~~~~ 353 (617)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87754
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=5.6e-09 Score=104.89 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=107.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHH--
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARN----VESQLNRL-- 282 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~----~~~l~~~L-- 282 (617)
.+.+.|+|++|+|||||++.+++.....-...+|+. ....+..+++..++..++....... ...+.+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999987542111112222 1233456777777777654422222 12333222
Q ss_pred ---cCCCeEEEEeCCCCH--HhHHHHHcccC---CCCCCcEEEEEcCCccc--cc--c---c--CcceEEEeccCChhHH
Q 037173 283 ---ARKKVLLVFDDVNHP--GQIESLIGCLD---ELASGSRVIITTRDKQV--LE--N---C--WVNQIYRMKELVDVDA 345 (617)
Q Consensus 283 ---~~k~~LlVLDdv~~~--~~~~~l~~~l~---~~~~gs~IlvTTR~~~v--~~--~---~--~~~~~~~l~~L~~~ea 345 (617)
.+++.++|+||++.. ..++.+..... .......|++|...... .. . . .....+.+++++.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 577899999999753 34444432211 11223345666543211 00 0 0 1234678999999999
Q ss_pred HHHHHHhhhcCC--CCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 346 HKLFCQCAFRGG--HLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 346 ~~Lf~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
.+++........ ....-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887763222 1122346789999999999999999988876
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.03 E-value=2.3e-10 Score=115.33 Aligned_cols=277 Identities=20% Similarity=0.246 Sum_probs=192.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC-C-CHHHHHHHHcCC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNA-R-NVESQLNRLARK 285 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~-~~~~l~~~L~~k 285 (617)
..+.+.++|.|||||||++-.+.+ +...|...+|+.+...++++.. +.-.+...+.-...+ . .+..+.....++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~---v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPAL---VFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhH---hHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 357899999999999999999999 8889999998887666544333 333333333333222 2 456788888999
Q ss_pred CeEEEEeCCCCH-HhHHHHHcccCCCCCCcEEEEEcCCcccccccCcceEEEeccCChh-HHHHHHHHhhhcCC---CCC
Q 037173 286 KVLLVFDDVNHP-GQIESLIGCLDELASGSRVIITTRDKQVLENCWVNQIYRMKELVDV-DAHKLFCQCAFRGG---HLD 360 (617)
Q Consensus 286 ~~LlVLDdv~~~-~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~---~~~ 360 (617)
+.++|+||.... +....+...+....+.-.|+.|+|..... .....+.+++|+.. ++.++|...+.... ...
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 999999999654 33334444444445666789999975332 24566788888766 78899887663222 122
Q ss_pred hhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHHH----HccC------CCchHHHHHHHcHhcCChhHHHHH
Q 037173 361 ASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMRK----LEII------PHVDILKVLKISYDSLDDSQKNVF 430 (617)
Q Consensus 361 ~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~~f 430 (617)
........+|.++..|.|++|..+++..+.-...+-...+.. +... ........+..||.-|..-++-.|
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~ 245 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALF 245 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHh
Confidence 334567889999999999999999999887655443333322 2222 123467789999999999999999
Q ss_pred hhhhcccCCcCHHHHHHhHhhcCC-------chHHhHHHHhhCCCceEe----CCEEEecHHHHHHHHHHHhhc
Q 037173 431 LDIACLLEGEHRDEVTSFFDASGF-------QAKIELSVLEDKSLITCL----NNQIRMHDLLRDMGREIVRNE 493 (617)
Q Consensus 431 l~la~fp~~~~~~~L~~~w~~~g~-------~~~~~l~~L~~~sLi~~~----~~~~~mHdlv~~~a~~~~~~e 493 (617)
..++.|...|+.+.. .|.+.|- ..-..+..|++++++... .-+|+.-+-++.|+.....+.
T Consensus 246 ~rLa~~~g~f~~~l~--~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 246 GRLAVFVGGFDLGLA--LAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred cchhhhhhhhcccHH--HHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988887722 2333222 234568888999998765 334777777788877776554
No 19
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=2.5e-08 Score=97.20 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=96.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
.+.+.|+|++|+|||+|++.+++....+...+.|+. .... ...... +.+.+. +.-+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~~----------------~~~~~~-~~dl 94 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSPA----------------VLENLE-QQDL 94 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhHH----------------HHhhcc-cCCE
Confidence 457899999999999999999999766666667766 2110 000011 111222 3348
Q ss_pred EEEeCCCCH---HhHH-HHHcccCCC-CCCcEEE-EEcCC---------cccccccCcceEEEeccCChhHHHHHHHHhh
Q 037173 289 LVFDDVNHP---GQIE-SLIGCLDEL-ASGSRVI-ITTRD---------KQVLENCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 289 lVLDdv~~~---~~~~-~l~~~l~~~-~~gs~Il-vTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
|+|||++.. ..|+ .+...+... ..|..+| +|++. +.+...+.....+++++++.++.++++.+.+
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 999999742 3333 233323221 2355554 45544 2334444455689999999999999999888
Q ss_pred hcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 354 FRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
.... -.-.++..+-|++.+.|..-.+..+-..|
T Consensus 175 ~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 175 YQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6432 22345778888999988876665544433
No 20
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.83 E-value=1.3e-08 Score=102.49 Aligned_cols=93 Identities=29% Similarity=0.542 Sum_probs=78.7
Q ss_pred CCCcccEEEcCccccCCCchHHHHHHHHhhCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCC-------
Q 037173 12 AKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASS------- 83 (617)
Q Consensus 12 ~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s------- 83 (617)
.....||||||++.- ....++-|.-.|+-+||+||+|- .+..|. +.+.+.+.|..++.+|.|+|||.++.
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 456799999997664 44589999999999999999998 788887 67899999999999999999998653
Q ss_pred -hhhHHHHHHHHHHhhhCCCEEEEEEee
Q 037173 84 -RWCLDELLKILECKHDYGQIVIPVFYR 110 (617)
Q Consensus 84 -~~c~~El~~~~~~~~~~~~~vipi~~~ 110 (617)
.|...|+..+++|.+. |||||-.
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D~ 710 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeecc
Confidence 4778899988887754 9999843
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.82 E-value=5.7e-08 Score=103.43 Aligned_cols=179 Identities=21% Similarity=0.272 Sum_probs=107.7
Q ss_pred cCCCcccchhhHHH---HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVAWRIKE---IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
..+.+||++..+.. +.+++. ......+.|+|++|+||||||+.+++.....|. .+.. . ......+ +
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~--~~~~~~i-r 78 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V--TSGVKDL-R 78 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c--cccHHHH-H
Confidence 34679999888766 777775 334557889999999999999999987644332 1110 0 1111111 1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEE--EcCCcc--ccc-ccCcce
Q 037173 261 ELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVII--TTRDKQ--VLE-NCWVNQ 333 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~--v~~-~~~~~~ 333 (617)
.++..... ....+++.+|++|+++. ..+.+.+...+. .+..+++ ||.+.. +.. ......
T Consensus 79 ~ii~~~~~-----------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 79 EVIEEARQ-----------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred HHHHHHHH-----------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 22211110 01145788999999974 445566665543 3444444 344332 111 111236
Q ss_pred EEEeccCChhHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHccCCchHHHHHhhh
Q 037173 334 IYRMKELVDVDAHKLFCQCAFRGGHLD-ASYTEVTRKAIKYAHGVPLALQVLGRH 387 (617)
Q Consensus 334 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~a~~ 387 (617)
.+.+.+++.++..+++........... ....+..+.|++.|+|.|..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 789999999999999988653211111 234567888999999999866554433
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.82 E-value=6.2e-08 Score=97.42 Aligned_cols=197 Identities=20% Similarity=0.276 Sum_probs=114.9
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHcC
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQ-LNRLAR 284 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l-~~~L~~ 284 (617)
.+.+....+||++|+||||||+.++......|...-= ...++.++..-+ +.. .....+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA--------v~~gvkdlr~i~-------------e~a~~~~~~g 103 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA--------VTSGVKDLREII-------------EEARKNRLLG 103 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--------ccccHHHHHHHH-------------HHHHHHHhcC
Confidence 4557778899999999999999999876655532111 122333333222 112 223358
Q ss_pred CCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEE--EcCCccccc---ccCcceEEEeccCChhHHHHHHHHhhhcCC
Q 037173 285 KKVLLVFDDVN--HPGQIESLIGCLDELASGSRVII--TTRDKQVLE---NCWVNQIYRMKELVDVDAHKLFCQCAFRGG 357 (617)
Q Consensus 285 k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 357 (617)
++.+|++|.|. +..+-+.+++.. ..|.-|+| ||-++...- ......++.+++|+.++..+++.+-+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 89999999995 556667776665 36766665 555543211 112347899999999999999988432221
Q ss_pred CC-----ChhHHHHHHHHHHHccCCchHHH----HHhhhhCCC---CHHHHHHHHHHHcc----C--CCchHHHHHHHcH
Q 037173 358 HL-----DASYTEVTRKAIKYAHGVPLALQ----VLGRHLCGR---SKEVWESAMRKLEI----I--PHVDILKVLKISY 419 (617)
Q Consensus 358 ~~-----~~~~~~~~~~i~~~~~G~PLai~----~~a~~L~~~---~~~~w~~~l~~l~~----~--~~~~i~~~l~~sy 419 (617)
.. ....++..+.+++.++|---++- ++...-+.. ..+..+..+.+-.. . .+-++.++|..|.
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 11 11235577788899888754332 222222222 23444444443111 1 1234666777777
Q ss_pred hcCChhH
Q 037173 420 DSLDDSQ 426 (617)
Q Consensus 420 ~~L~~~~ 426 (617)
..=++++
T Consensus 261 RGSD~dA 267 (436)
T COG2256 261 RGSDPDA 267 (436)
T ss_pred ccCCcCH
Confidence 6654443
No 23
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=6.7e-08 Score=94.33 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=105.5
Q ss_pred CCCccc--chhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 185 NKGLVG--VAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 185 ~~~~vG--R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
-++|++ .+..++.+.+++. ....+.+.|+|++|+|||+||+.++++........+++. +...... . ..+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~--~----~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA--D----PEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh--H----HHH
Confidence 345652 4456777777764 234568899999999999999999998655544455554 2111110 0 111
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCHH---h-HHHHHcccCC-CCCCcEEEEEcCCccc---------ccc
Q 037173 263 LSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHPG---Q-IESLIGCLDE-LASGSRVIITTRDKQV---------LEN 328 (617)
Q Consensus 263 ~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~-~~~l~~~l~~-~~~gs~IlvTTR~~~v---------~~~ 328 (617)
.+.+.+ .-+||+||++... . .+.+...+.. ...+..+|+||+.... ...
T Consensus 85 ----------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 85 ----------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ----------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 111222 3489999996432 1 2333333221 1234578888875421 112
Q ss_pred cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 329 CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 329 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
+.....+++++++.++...++...+-... ..-..+..+.+++.+.|+|..+..+...+
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22235789999999999999887552211 12335667888888999998777665443
No 24
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.81 E-value=7.4e-08 Score=90.64 Aligned_cols=179 Identities=18% Similarity=0.213 Sum_probs=101.6
Q ss_pred ccCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
..-++|||.+.-++.+.-++.. ..+....+.+||++|+||||||.-+++.....|. +.. ...... ..++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~k---~~dl- 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIEK---AGDL- 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC--S---CHHH-
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhhh---HHHH-
Confidence 4568899999999988766652 2345778999999999999999999998766553 222 000111 1111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCC--------CC-----------CcEEEE
Q 037173 260 KELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDEL--------AS-----------GSRVII 318 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~--------~~-----------gs~Ilv 318 (617)
..+...++ ++-+|++|.+. +..+-+.+.+...++ ++ -+-|=.
T Consensus 93 ----------------~~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 93 ----------------AAILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ----------------HHHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ----------------HHHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 11112222 45588889996 344444454443221 11 223456
Q ss_pred EcCCcccccccC--cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 319 TTRDKQVLENCW--VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 319 TTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
|||...+..... ..-..+++..+.+|-.++..+.+.. -.-+..++.+.+|++++.|-|--..-+-..+
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 788755443322 3345689999999999999887732 2234557889999999999997555444444
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=5e-07 Score=99.09 Aligned_cols=181 Identities=16% Similarity=0.138 Sum_probs=112.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 242 (617)
..+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... |...+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 34679999999999999986332 24566799999999999999999874211 111111
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. ......+.++ ++++...... -..++.-++|||+++. ...++.++..+.......++|+||
T Consensus 93 ID----Aas~rgVDdI-ReLIe~a~~~-----------P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 93 MD----AASNRGVDEM-AALLERAVYA-----------PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred ec----ccccccHHHH-HHHHHHHHhc-----------cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 11 0001111111 1111111000 0123445899999974 455777877776556678888877
Q ss_pred CCcccc-cc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHH
Q 037173 321 RDKQVL-EN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQV 383 (617)
Q Consensus 321 R~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~ 383 (617)
.+..-. .. ......++++.++.++..+.+.+...... .....+..+.|++.++|..- |+..
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 765322 11 12347899999999999999988763222 22345678889999998764 5444
No 26
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.75 E-value=4.3e-07 Score=93.61 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=107.7
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
.-.+++|++..++.+..++.. ...+.+.|+|++|+||||+|+.+++..... +.. .++. +. .+....... ..+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~-~~-~~~~~~~~~-~~~~ 88 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLE-LN-ASDERGIDV-IRNK 88 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEE-ec-cccccchHH-HHHH
Confidence 346689999999999999863 334457999999999999999999885332 221 1221 10 111111111 1111
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcc-ccccc-CcceEEEec
Q 037173 263 LSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQ-VLENC-WVNQIYRMK 338 (617)
Q Consensus 263 ~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~~l~ 338 (617)
+..+....+. ....+-++++|+++. .+....+...+......+.+|+++.... +.... .....+++.
T Consensus 89 i~~~~~~~~~---------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 89 IKEFARTAPV---------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HHHHHhcCCC---------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 1111110000 012355899999963 3344555555544455677777764332 21111 123468999
Q ss_pred cCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 339 ELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 339 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
+++.++....+...+..... .-.++.+..+++.++|.+--+.
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999998887743221 2335678899999999887543
No 27
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.75 E-value=1.1e-06 Score=97.01 Aligned_cols=238 Identities=15% Similarity=0.087 Sum_probs=128.5
Q ss_pred ccCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-----cC--ceEEEEechhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-----FE--GSYFALDVREAEET 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 252 (617)
..|+.+.||++|+++|...|.. +.....++.|+|++|.|||+.++.+.+++... .+ ..+++. ....
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCcc
Confidence 4567899999999999998863 23334577899999999999999999875432 12 134444 2222
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CH----HHHHHHHc---CCCeEEEEeCCCCHH-----hHHHHHcccCCCCCCcEEEE
Q 037173 253 GRIKDLQKELLSKLLNDGNAR--NV----ESQLNRLA---RKKVLLVFDDVNHPG-----QIESLIGCLDELASGSRVII 318 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~--~~----~~l~~~L~---~k~~LlVLDdv~~~~-----~~~~l~~~l~~~~~gs~Ilv 318 (617)
.....+...+..++....+.. .. ..+...+. ....+||||+++... .+-.+..... ..+++|++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 445666667777774443222 22 33333331 224589999997331 2222222211 23455443
Q ss_pred --EcCCccc--------ccccCcceEEEeccCChhHHHHHHHHhhhcCC--CCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 319 --TTRDKQV--------LENCWVNQIYRMKELVDVDAHKLFCQCAFRGG--HLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 319 --TTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
.|..... ...++ ...+..+|++.++-.+++..++-... -.+...+-+|+.++...|..=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3332211 11221 22466799999999999999874321 12222233333333333344445554443
Q ss_pred hhCC--C---CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhh
Q 037173 387 HLCG--R---SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIA 434 (617)
Q Consensus 387 ~L~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 434 (617)
+... . ..+....+...+. ...+......||.+.|.+|..+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHH
Confidence 3321 1 1223333333221 12244456788988887766444
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.4e-06 Score=91.02 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=110.0
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc---------------------CceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF---------------------EGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~ 242 (617)
.-..++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+++.+.... ....+
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 4467999999999999988633 2345678999999999999999998753111 00111
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCCeEEEEeCCCCH--HhHHHHHcccCCCCCCcE
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL-----ARKKVLLVFDDVNHP--GQIESLIGCLDELASGSR 315 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~ 315 (617)
+. ......+. .+..+.+.+ .+++-++|+|+++.. ..++.++..+.......+
T Consensus 93 ~~----~~~~~~v~-----------------~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 93 ID----AASRTKVE-----------------EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred ec----ccccCCHH-----------------HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11 00001111 112222222 234559999999744 456677777665556777
Q ss_pred EEEEcCCc-ccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 316 VIITTRDK-QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 316 IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
+|++|.+. .+... ......+++.+++.++..+.+...+-... ....++.++.|++.++|.|-.+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 77776543 22221 12236899999999999998887663322 12234667889999999886433
No 29
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.70 E-value=5.3e-07 Score=93.71 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=108.8
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCc-eEEEEechhhhccCCHHHHHH-
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEG-SYFALDVREAEETGRIKDLQK- 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~~- 260 (617)
..+.++|++..++.+.+++.. +..+.+.++|++|+||||+|+.+++.+... +.. .+.+. ........ ...+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~-~~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG-KKYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc-hhhhhcC
Confidence 346789999999999998863 334568899999999999999999875432 222 23332 11110000 000000
Q ss_pred -HHHHHHhcC--CCCCCHHHHHH---HH------cCCCeEEEEeCCCCH--HhHHHHHcccCCCCCCcEEEEEcCCcc-c
Q 037173 261 -ELLSKLLND--GNARNVESQLN---RL------ARKKVLLVFDDVNHP--GQIESLIGCLDELASGSRVIITTRDKQ-V 325 (617)
Q Consensus 261 -~l~~~l~~~--~~~~~~~~l~~---~L------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IlvTTR~~~-v 325 (617)
......... ........+++ .. ...+-+||+||++.. .....+...+......+++|+||.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 00001122221 11 134458999999643 334445444443345677877775432 2
Q ss_pred cccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 326 LENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.... .....+++.+++.++..+++...+..... .-..+.++.+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2211 22357889999999999998886633221 23456788899999998765443
No 30
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.1e-07 Score=96.55 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=114.9
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hcc-CceEEEEechhhhccCCHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RCF-EGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f-~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
|.....++|.+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+++.+- +.- ............... +.-...
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~c 92 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPVA 92 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChHH
Confidence 455678999999999999988643 2245688999999999999999998742 111 100000000000000 000011
Q ss_pred HHHHHHHh-----------cCC----CCCCHHHHHHH---H-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCc
Q 037173 260 KELLSKLL-----------NDG----NARNVESQLNR---L-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGS 314 (617)
Q Consensus 260 ~~l~~~l~-----------~~~----~~~~~~~l~~~---L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs 314 (617)
+.+..... ..+ ..+.++.+++. + .+++-++|+|+++ +....+.++..+.....++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 11111000 000 11234444443 2 2566799999996 5566777777766545667
Q ss_pred EEEEEcCCcc-cccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 315 RVIITTRDKQ-VLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 315 ~IlvTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
.+|++|.+.. +... ......+.+.+++.++..+++..... . .. .+....++..++|.|+....+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~-~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--D-LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--c-CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 6777776653 3222 12346899999999999999987641 1 11 1223678999999998665543
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.2e-06 Score=94.57 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=112.3
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh--ccCceEEEEechh-hhc--cCCHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR--CFEGSYFALDVRE-AEE--TGRIKDL 258 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~-~~~--~~~~~~l 258 (617)
.-+.++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...+|.+.... +.. ..++.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~-- 88 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL-- 88 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE--
Confidence 34678999999999998886432 2456799999999999999999988531 2222333321000 000 00000
Q ss_pred HHHHHHHHhcCCCCCC---HHHHHHHH-----cCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCC-ccccc
Q 037173 259 QKELLSKLLNDGNARN---VESQLNRL-----ARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRD-KQVLE 327 (617)
Q Consensus 259 ~~~l~~~l~~~~~~~~---~~~l~~~L-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~ 327 (617)
.+... .... +..+.+.+ .+++-++|+|+++. ...++.++..+......+.+|++|.. ..+..
T Consensus 89 ------el~~~-~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 89 ------EIDAA-SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred ------Eeccc-ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 00000 0011 12222222 24566999999974 45677777777654556666655543 33322
Q ss_pred cc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 328 NC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 328 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
.. .....+++.+++.++..+.+...+-.... ....+.+..|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 22 23468999999999999999887743221 224567889999999998644
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=98.67 E-value=1.1e-06 Score=95.57 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=111.1
Q ss_pred cccCCCcccchhhHHHHHHHhhhc--CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIR--SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
|.....++|.+..++.+.+|+..- ....+.+.|+|++|+||||+|+.+++.+. |+ .+-+. .+.... ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd~r~-~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASDQRT-ADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----cccccc-HHHH
Confidence 334567999999999999998632 22267899999999999999999999753 22 12222 122111 1222
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHc-CCCeEEEEeCCCCH------HhHHHHHcccCCCCCCcEEEEEcCCcc-ccc-c-c
Q 037173 260 KELLSKLLNDGNARNVESQLNRLA-RKKVLLVFDDVNHP------GQIESLIGCLDELASGSRVIITTRDKQ-VLE-N-C 329 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~~------~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~-~-~ 329 (617)
..++....... .+. .++-+||+|+++.. ..+..+...+. ..+..||+|+.+.. ... . -
T Consensus 82 ~~~i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 82 ERVAGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 22222221110 111 36779999999753 23555554444 23445666665432 111 1 1
Q ss_pred CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 330 WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 330 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
.....+++.+++.++....+...+..... ....+....|++.++|..-.+....
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI--ECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23467899999999999988877643221 1235678999999999876554433
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=98.66 E-value=1.6e-06 Score=89.20 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=108.2
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEEechhhhccCCHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
..-..++|.+..++.|..++.. +..+.+.++|++|+||||+|..+++.+. ..|...+.-.+ .+...+.. ..++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~-~vr~ 83 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGID-VVRN 83 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHH-HHHH
Confidence 3446789999989999888753 3344578999999999999999999853 33332221111 11222222 2222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCc-cccccc-CcceEEEe
Q 037173 262 LLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDK-QVLENC-WVNQIYRM 337 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~-~~~~~~~l 337 (617)
.+.......... -.++.-+++||+++. ....+.+...+......+++++++... .+.... .....+++
T Consensus 84 ~i~~~~~~~~~~--------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 84 KIKMFAQKKVTL--------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred HHHHHHhccccC--------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 222211110000 023456999999974 334455555444445667777766543 222211 12357899
Q ss_pred ccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 338 KELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 338 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
++++.++..+.+...+-.... .-..+....|++.++|..-.+
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 999999999998887633221 123567888999999877543
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=2.1e-06 Score=93.27 Aligned_cols=181 Identities=18% Similarity=0.132 Sum_probs=112.3
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceE
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSY 241 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 241 (617)
..-..++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+... +...+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 345679999999999999996332 24678999999999999999999874211 11111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEE
Q 037173 242 FALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvT 319 (617)
.+. .+....+.++ ++++..... .-..++.-++|+|+++. ....+.++..+.....+.++|++
T Consensus 91 EID----AAs~~~VddI-Reli~~~~y-----------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 91 EID----AASRTKVEDT-RELLDNVPY-----------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred Eec----ccccCCHHHH-HHHHHHHhh-----------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 111 0001111111 111111100 00134566999999974 45677777777655567778877
Q ss_pred cCCcc-cccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 320 TRDKQ-VLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 320 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
|.+.. +... ......+++.+++.++..+.+...+-... .....+....|++.++|.+-.+.
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 76542 2111 12346899999999999998887763322 22345678889999999885443
No 35
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=2e-06 Score=93.28 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=112.0
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc-CceEEEEechhhhccCCHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF-EGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
...+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..- +..--+. +...+.-.....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHH
Confidence 345679999999999999996332 245678999999999999999998743200 0000000 000000000000
Q ss_pred HHHH----H-hcC-CCCCCHHHHHH---HH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC-cc
Q 037173 262 LLSK----L-LND-GNARNVESQLN---RL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD-KQ 324 (617)
Q Consensus 262 l~~~----l-~~~-~~~~~~~~l~~---~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~ 324 (617)
+... + ..+ .....++.+++ .+ .++.-++|+|+++ +....+.|+..+..-..++++|++|.+ ..
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 0000 0 000 00112222222 21 3455699999997 456778888877665566666655554 33
Q ss_pred ccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 325 VLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
+.... .....+.+..++.++..+.+.+.+.... .....+..+.|++.++|.|.-...
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33221 1236789999999999998887663222 122345678899999999974433
No 36
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.64 E-value=6.7e-07 Score=87.32 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=100.5
Q ss_pred ccCCCcc-cchhh-HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 183 SENKGLV-GVAWR-IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 183 ~~~~~~v-GR~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
...++|+ |...+ +..+.++.. .....+.+.|+|.+|+|||+||..+++.....-....++.. ... . .
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~------~---~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASP------L---L 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHh------H---H
Confidence 3345555 54433 344444443 22334678899999999999999999985443233444441 110 0 0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH--HhHHHHHcccCCC-CCCc-EEEEEcCCccccc--------c
Q 037173 261 ELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP--GQIESLIGCLDEL-ASGS-RVIITTRDKQVLE--------N 328 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~-~~gs-~IlvTTR~~~v~~--------~ 328 (617)
.+ .. ....-++|+||++.. ...+.+...+... ..+. .+|+|++...... .
T Consensus 84 ~~-----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 84 AF-----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred HH-----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 00 01 123447999999632 2323333333211 2333 4677766543211 2
Q ss_pred cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 329 CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 329 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
+.....+++++++.++-..++...+-... ..-.++..+.+++.+.|++..+..+...+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22236889999999887777766442211 22345678888999999999887776655
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1e-06 Score=98.46 Aligned_cols=180 Identities=15% Similarity=0.121 Sum_probs=113.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-c--------------------CceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-F--------------------EGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f--------------------~~~~~ 242 (617)
....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... . ...++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 34679999999999999886332 24556899999999999999999875321 1 00111
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. ......+.. .+++...+.. .-..+++-++|||+++ +.+..+.|+..+.......++|++|
T Consensus 93 id----Aas~~kVDd-IReLie~v~~-----------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 93 VD----AASRTKVDD-TRELLDNVQY-----------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ec----cccccCHHH-HHHHHHHHHh-----------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 11 000011111 1222221110 0113566799999996 5567788887776655667776666
Q ss_pred CCc-ccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 321 RDK-QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 321 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
.+. .+... ......|++.+|+.++..+.+...+-... .....+.++.|++.++|.|--+.
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 554 33221 12247899999999999999887663221 22345678899999999886443
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.59 E-value=1.4e-06 Score=85.23 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=100.5
Q ss_pred CCcc-cc-hhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHH
Q 037173 186 KGLV-GV-AWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELL 263 (617)
Q Consensus 186 ~~~v-GR-~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (617)
++|+ |- ...+..+.++.. ....+.+.|+|++|+|||+|++.+++.....-..+.++. ..... ...
T Consensus 22 d~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~---- 88 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFV---- 88 (235)
T ss_pred cccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhh----
Confidence 3454 62 223444444443 223457899999999999999999998665544455555 21100 000
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH---HhHH-HHHcccCCC-CCC-cEEEEEcCCcc---------cccc
Q 037173 264 SKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP---GQIE-SLIGCLDEL-ASG-SRVIITTRDKQ---------VLEN 328 (617)
Q Consensus 264 ~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~-~l~~~l~~~-~~g-s~IlvTTR~~~---------v~~~ 328 (617)
..+.+.+.+ --+|++||+... ..|+ .+...+... ..| .++|+||+... +...
T Consensus 89 ------------~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 89 ------------PEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ------------HHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 111122221 238899999532 2232 222222211 123 47899988652 2223
Q ss_pred cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhh
Q 037173 329 CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRH 387 (617)
Q Consensus 329 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~ 387 (617)
+....++++++++.++-.+++.+.+.... -.-.++...-|++.+.|..-.+..+-..
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 34457899999999999999887663321 2234677888888888876655544433
No 39
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=1.3e-06 Score=85.36 Aligned_cols=169 Identities=17% Similarity=0.111 Sum_probs=99.0
Q ss_pred CCCcccchh-hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHH
Q 037173 185 NKGLVGVAW-RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELL 263 (617)
Q Consensus 185 ~~~~vGR~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (617)
-++|++... .+..+..+.. + .....+.|+|.+|+|||+|++.+++...+....+.|+. ... ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~~------~~~~~- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQA------AAGRL- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HHH------hhhhH-
Confidence 345665443 3333333332 1 22346999999999999999999998766655566665 111 11111
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----HhHHHHHcccCC-CCCCcEEEEEcCCccc---------cccc
Q 037173 264 SKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----GQIESLIGCLDE-LASGSRVIITTRDKQV---------LENC 329 (617)
Q Consensus 264 ~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~l~~-~~~gs~IlvTTR~~~v---------~~~~ 329 (617)
....+.+ .+.-+||+||+... ..-..+...+.. ...|..||+|++...- ...+
T Consensus 85 ------------~~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 85 ------------RDALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred ------------HHHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 1111122 23358999999632 211223332221 1346679999986421 1122
Q ss_pred CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 330 WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 330 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
.....+++++++.++-.+++.+++.... -.-.++....|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 2346889999999999999998774322 2233567778888887766544
No 40
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=3e-07 Score=81.03 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=76.4
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
+++.|.|+.|+|||||+++++.+.. .-...+++. ............+ ..+.+.+....++.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i 65 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPRDRRLADPD------------LLEYFLELIKPGKKYI 65 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHHHHHHhhhh------------hHHHHHHhhccCCcEE
Confidence 5899999999999999999998755 223445554 1111110000000 1122333333477899
Q ss_pred EEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcccccc------cCcceEEEeccCChhHH
Q 037173 290 VFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLEN------CWVNQIYRMKELVDVDA 345 (617)
Q Consensus 290 VLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~------~~~~~~~~l~~L~~~ea 345 (617)
+||++.....|......+....+..+|++|+.+...... .+....+++.||+..|-
T Consensus 66 ~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 66 FIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999998877787777776655567899999887655422 12335689999988763
No 41
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.56 E-value=1.8e-06 Score=83.40 Aligned_cols=162 Identities=20% Similarity=0.242 Sum_probs=96.0
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCc--eEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG--SYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARK 285 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k 285 (617)
....+.|+|..|+|||.|.+++++.+....+. ++++. ..++...+...+.. .....+++.+++-
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----~~~~~~~~~~~~~ 98 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----GEIEEFKDRLRSA 98 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----TSHHHHHHHHCTS
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----ccchhhhhhhhcC
Confidence 34567899999999999999999997665443 34444 23344444444332 2345666666643
Q ss_pred CeEEEEeCCCCH---HhH-HHHHcccCCC-CCCcEEEEEcCCccc-c--------cccCcceEEEeccCChhHHHHHHHH
Q 037173 286 KVLLVFDDVNHP---GQI-ESLIGCLDEL-ASGSRVIITTRDKQV-L--------ENCWVNQIYRMKELVDVDAHKLFCQ 351 (617)
Q Consensus 286 ~~LlVLDdv~~~---~~~-~~l~~~l~~~-~~gs~IlvTTR~~~v-~--------~~~~~~~~~~l~~L~~~ea~~Lf~~ 351 (617)
=+|++||++.. ..| +.+...+... ..|.+||+|++.... . ..+...-++++++++.++-.+++.+
T Consensus 99 -DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 99 -DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp -SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred -CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 47889999632 222 2232222211 357789999965421 1 1223456899999999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 352 CAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
.+-... -.-.+++++-|++.+.+..-.+..+-.
T Consensus 178 ~a~~~~--~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 178 KAKERG--IELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHhC--CCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 884322 123456777788887776655554433
No 42
>PTZ00202 tuzin; Provisional
Probab=98.54 E-value=1.2e-05 Score=82.85 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=113.5
Q ss_pred CCcCCCCCchhhH--HHHHHHhhhhccccc------cccccCCCcccchhhHHHHHHHhhhcC-CCeEEEEEeccCCChh
Q 037173 152 SGFDSHVIRPESK--LIEAIANGVLKRLDA------TFQSENKGLVGVAWRIKEIESLLCIRS-AGVYVLGIWGIGGIGK 222 (617)
Q Consensus 152 ~g~~~~~~~~e~~--~i~~i~~~v~~~l~~------~~~~~~~~~vGR~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGK 222 (617)
-||.+.++..+.. ...-.++...+..++ ..|.....|+||+.++..|...|...+ ...+++.|+|++|+||
T Consensus 220 F~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GK 299 (550)
T PTZ00202 220 FGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGK 299 (550)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCH
Confidence 3455555444332 223334444444433 346778899999999999999996433 3356999999999999
Q ss_pred hHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCC--CH-HHHHHHH-----c-CCCeEEEEeC
Q 037173 223 TTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNAR--NV-ESQLNRL-----A-RKKVLLVFDD 293 (617)
Q Consensus 223 TtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~-~~l~~~L-----~-~k~~LlVLDd 293 (617)
|||++.+..... ...++.+. .+..+++..++..++...... ++ ..+.+.+ . +++.+||+-=
T Consensus 300 TTLlR~~~~~l~----~~qL~vNp------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l 369 (550)
T PTZ00202 300 SSLCRSAVRKEG----MPAVFVDV------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL 369 (550)
T ss_pred HHHHHHHHhcCC----ceEEEECC------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999997643 22444422 256899999999998643222 22 3333332 2 5666666542
Q ss_pred CC--CHH-hHHHHHcccCCCCCCcEEEEEcCCccccc---ccCcceEEEeccCChhHHHHHHHHhh
Q 037173 294 VN--HPG-QIESLIGCLDELASGSRVIITTRDKQVLE---NCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 294 v~--~~~-~~~~l~~~l~~~~~gs~IlvTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
-+ +.. ...+.. .+.....-|+|++----+.+-. .......|.+++++.++|.+.-....
T Consensus 370 reg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 370 REGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 22 211 111111 1222245677776543332211 11233678999999999988776544
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.54 E-value=1.2e-06 Score=78.69 Aligned_cols=123 Identities=21% Similarity=0.141 Sum_probs=69.6
Q ss_pred ccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhc
Q 037173 189 VGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLN 268 (617)
Q Consensus 189 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 268 (617)
+|++..+..+...+.. ...+.+.|+|++|+|||++++.+++.....-...+++. ...... ...........
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~---~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLE---GLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhh---hhHHHHHhhhh---
Confidence 4788889999888853 23468889999999999999999998653333344444 211111 11100000000
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEEeCCCCH--H---hHHHHHcccCCC---CCCcEEEEEcCCcc
Q 037173 269 DGNARNVESQLNRLARKKVLLVFDDVNHP--G---QIESLIGCLDEL---ASGSRVIITTRDKQ 324 (617)
Q Consensus 269 ~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~---~~~~l~~~l~~~---~~gs~IlvTTR~~~ 324 (617)
............++.++|+||++.. . .+.......... ..+..+|+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111122456789999999853 2 223333332221 36788888888653
No 44
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.3e-06 Score=91.50 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=111.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 242 (617)
.-..++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |...+.
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3467899999999999988633 234567899999999999999999864311 112222
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. .....++.++ ++++..+.. .-..+++-++|+|+++ +....+.++..+......+.+|++|
T Consensus 93 id----aas~~gvd~i-r~ii~~~~~-----------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 93 ID----AASRTGVEET-KEILDNIQY-----------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred ee----cccccCHHHH-HHHHHHHHh-----------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 21 0011111111 111111100 0123566799999997 4556777877776555666666554
Q ss_pred CC-cccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHH
Q 037173 321 RD-KQVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVL 384 (617)
Q Consensus 321 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 384 (617)
.+ ..+... ......+++.+++.++..+.+...+-... .....+....|++.++|.+- |+..+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 333322 12347899999999999888877553221 22345667889999999775 44444
No 45
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.52 E-value=7.8e-07 Score=93.26 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=101.6
Q ss_pred ccCCCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 183 SENKGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
.....+.|+++.+++|.+.+... -...+-+.|+|++|+|||++|+.+++.....| +. +.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~----v~- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IR----VV- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Ee----cc-
Confidence 34457899999999998876421 12245689999999999999999999865443 11 00
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CC
Q 037173 252 TGRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--AS 312 (617)
Q Consensus 252 ~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~ 312 (617)
...+........ ...+..+.+.. ...+.+|+||+++.. ..+..+...+... ..
T Consensus 189 ---~~~l~~~~~g~~-----~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 189 ---GSELVRKYIGEG-----ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred ---hHHHHHHhhhHH-----HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 001111110000 00011222222 346789999998642 1122333222211 34
Q ss_pred CcEEEEEcCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 313 GSRVIITTRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 313 gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
+..||.||....... .......+.++..+.++..++|..+..+...... .....+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 677888887543221 1123567899999999999999988744332211 12466777777764
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.2e-06 Score=86.72 Aligned_cols=176 Identities=15% Similarity=0.227 Sum_probs=111.4
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh------hccCceEEEEechhhhccCCHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS------RCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
+.++|.+...+.+.+++..+ .-...+.++|+.|+||||+|..++..+. .+.+...|.. . ......+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHHH-
Confidence 45789998899999988633 2356778999999999999999998742 1222222221 0 0111222221
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcccc-cc-cCcceEE
Q 037173 260 KELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQVL-EN-CWVNQIY 335 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~~-~~~~~~~ 335 (617)
+++...+... -..+++-++|+|+++ +.+.++.++..+....+++.+|++|.+.... +. ......+
T Consensus 79 r~~~~~~~~~-----------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 79 RNIIEEVNKK-----------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHHhcC-----------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 1222221110 012345577777774 6677888888888777888888888665322 11 1224689
Q ss_pred EeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 336 RMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 336 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
++.+++.++....+..... . ...+.++.++..++|.|.-+..
T Consensus 148 ~~~~~~~~~~~~~l~~~~~---~---~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYN---D---IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eCCCcCHHHHHHHHHHHhc---C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999888866541 1 1234477889999999875543
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=7.8e-06 Score=88.64 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=109.6
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 242 (617)
...++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-.. +...+.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 44679999999999999996332 24567899999999999999999874211 111122
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. ......+.++ ++++..+... -..++.-++|+|+++ +.+..+.++..+....+.+++|++|
T Consensus 93 id----aas~~~v~~i-R~l~~~~~~~-----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 93 VD----AASRTKVEDT-RELLDNIPYA-----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred Ec----ccccCCHHHH-HHHHHHHhhc-----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 21 1111122221 1122211100 012455689999997 4566777777776555677777665
Q ss_pred CCc-ccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 321 RDK-QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 321 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
.+. .+... ......+++++++.++..+.+...+-... .....+....|++.++|.+--+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHH
Confidence 443 22211 11235688999999998887766653222 11234567889999999886443
No 48
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=3.2e-06 Score=82.62 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=93.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
..+.|+|.+|+|||.|++.+++.....-..++|+. .. ++... ...+.+.+++-. +|
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~~------~~~~~-------------~~~~~~~~~~~d-~L 101 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----LA------ELLDR-------------GPELLDNLEQYE-LV 101 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----HH------HHHhh-------------hHHHHHhhhhCC-EE
Confidence 57889999999999999999988665444566665 11 11110 022333333333 67
Q ss_pred EEeCCCCH---HhH-HHHHcccCCC-CCCcEEEEEcCCccc---------ccccCcceEEEeccCChhHHHHHHHHhhhc
Q 037173 290 VFDDVNHP---GQI-ESLIGCLDEL-ASGSRVIITTRDKQV---------LENCWVNQIYRMKELVDVDAHKLFCQCAFR 355 (617)
Q Consensus 290 VLDdv~~~---~~~-~~l~~~l~~~-~~gs~IlvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 355 (617)
|+||+... ..| +.+...++.. ..|..+|+|++...- ...+....++++++++.++-.+++..++..
T Consensus 102 iiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 102 CLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred EEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 89999522 233 2243333221 346788998875421 112233467899999999999999866643
Q ss_pred CCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 356 GGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 356 ~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
.. -.-.+++..-|++.+.|..-.+..+-..|
T Consensus 182 ~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 182 RG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred cC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 21 12235777888888888766655544443
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=7e-06 Score=88.07 Aligned_cols=186 Identities=19% Similarity=0.123 Sum_probs=108.7
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc----c-----------------CceE
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC----F-----------------EGSY 241 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f-----------------~~~~ 241 (617)
..-+.++|.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... + ....
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 345679999988888888775332 23567899999999999999999874211 0 0111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEE
Q 037173 242 FALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvT 319 (617)
.+. .+...++..+ +++...... .-..+++-++|+|+++. .+..+.++..+........+|++
T Consensus 90 el~----aa~~~gid~i-R~i~~~~~~-----------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 90 ELD----AASNRGIDEI-RKIRDAVGY-----------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred EEe----CcccCCHHHH-HHHHHHHhh-----------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 111 1111112211 122111100 00134566999999974 34566666666543445555544
Q ss_pred cCC-ccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHHHHhhh
Q 037173 320 TRD-KQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQVLGRH 387 (617)
Q Consensus 320 TR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~a~~ 387 (617)
|.+ ..+.... .....+++.+++.++....+...+.... ..-..+....|++.++|- +.++..+-..
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 443 2232221 2346899999999999998888764322 123356778888888655 5666665543
No 50
>PRK09087 hypothetical protein; Validated
Probab=98.51 E-value=2.8e-06 Score=82.42 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=89.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
.+.+.|+|++|+|||+|++.+++... ..++. . ..+...+... +.+ -+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~----~------~~~~~~~~~~----------------~~~--~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH----P------NEIGSDAANA----------------AAE--GP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec----H------HHcchHHHHh----------------hhc--Ce
Confidence 45789999999999999998887532 22443 1 0111111111 111 27
Q ss_pred EEEeCCCC----HHhHHHHHcccCCCCCCcEEEEEcCCc---------ccccccCcceEEEeccCChhHHHHHHHHhhhc
Q 037173 289 LVFDDVNH----PGQIESLIGCLDELASGSRVIITTRDK---------QVLENCWVNQIYRMKELVDVDAHKLFCQCAFR 355 (617)
Q Consensus 289 lVLDdv~~----~~~~~~l~~~l~~~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 355 (617)
|++||++. .+.+-.+...+. ..|..||+|++.. .....+....++++++++.++-.+++.+.+-.
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 88899953 233333333322 3467899988743 23333445578999999999999999988743
Q ss_pred CCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 356 GGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 356 ~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
. .-.-.+++.+-|++.+.|..-++..+...|
T Consensus 169 ~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 169 R--QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred c--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 122346778888888888877766544333
No 51
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.5e-06 Score=88.00 Aligned_cols=192 Identities=18% Similarity=0.123 Sum_probs=114.9
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc----cCceEEEEechhhhccCCHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC----FEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 257 (617)
|.....++|.+...+.+...+..+ .....+.|+|+.|+||||+|..+++.+-.. +....... ......
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCCCH
Confidence 556778999999999999988643 234578899999999999999999985331 11110000 000001
Q ss_pred HHHHHHHH-------Hh----cC----CCCCCHHHHH---HHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCC
Q 037173 258 LQKELLSK-------LL----ND----GNARNVESQL---NRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELAS 312 (617)
Q Consensus 258 l~~~l~~~-------l~----~~----~~~~~~~~l~---~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~ 312 (617)
....+... +. .. .....++.++ +.+ .++.-++|+|+++ +....+.++..+.....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 11222111 00 00 0112333333 333 3456699999997 45556667666654445
Q ss_pred CcEEEEEc-CCccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 313 GSRVIITT-RDKQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 313 gs~IlvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
++.+|++| +...+.... .....+++.+++.++..+++....... . ...+.+..+++.++|.|.....+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554444 443333221 123689999999999999998743211 1 224557889999999998655443
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.5e-05 Score=84.31 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=109.9
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCc--eEEEEechhhhccCCHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEG--SYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~--~~~~~~~~~~~~~~~~~~l~ 259 (617)
..-..++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+... ... .+..+ ..-..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHHH
Confidence 345678999999999999886432 23468899999999999999999874321 110 00000 0000000
Q ss_pred HHHHHHHhcCC--CCC---CHHHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC-cccc
Q 037173 260 KELLSKLLNDG--NAR---NVESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD-KQVL 326 (617)
Q Consensus 260 ~~l~~~l~~~~--~~~---~~~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~v~ 326 (617)
......+..-+ ... ++..+.+.+ .++.-++|+|+++ +.+.++.++..+........+|++|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 00000000000 000 112222222 3456699999997 456788887777654455655555544 3332
Q ss_pred ccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 327 ENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
... .....|.+.+++.++..+.+...+-... ..-..+....|++.++|.+-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHH
Confidence 221 2236799999999999988887763222 22345678999999999985
No 53
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=5.2e-06 Score=89.41 Aligned_cols=184 Identities=17% Similarity=0.115 Sum_probs=110.5
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC--c-----eEEEEechhhhccCCH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE--G-----SYFALDVREAEETGRI 255 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-----~~~~~~~~~~~~~~~~ 255 (617)
..-.+++|.+.-+..|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. . .+..+
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----------- 85 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----------- 85 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC-----------
Confidence 34567899999999998877533 22467889999999999999999987422100 0 00000
Q ss_pred HHHHHHHHHHHh------cCCCCCCHHHHHH---H-----HcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEE-
Q 037173 256 KDLQKELLSKLL------NDGNARNVESQLN---R-----LARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVII- 318 (617)
Q Consensus 256 ~~l~~~l~~~l~------~~~~~~~~~~l~~---~-----L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~Ilv- 318 (617)
.....+..... .......++.+++ . ..+++-++|+|+++. ...++.+...+....+.+.+|+
T Consensus 86 -~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 86 -TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred -hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 00000000000 0001111222222 1 134667899999974 4567777777765556666655
Q ss_pred EcCCccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 319 TTRDKQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 319 TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
||+...+.... .....+++.+++.++..+.+...+-... .....+.+..|++.++|.+--+
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 44444443322 2336789999999999999988874322 2223566788999999988543
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.3e-05 Score=85.76 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=111.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh---------------------ccCceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR---------------------CFEGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------------~f~~~~~ 242 (617)
...++||.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+-- .+..++.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 45678999999999988886332 2457889999999999999999875311 1112222
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. .+...++.++. +++...... -..++.-++|+|+++ +.+..+.+...+....+.+++|++|
T Consensus 90 id----aas~~~vddIR-~Iie~~~~~-----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 90 ID----AASNTSVDDIK-VILENSCYL-----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred Ee----cccCCCHHHHH-HHHHHHHhc-----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 22 11112222211 121111100 012455689999996 4456777777776656677777666
Q ss_pred CC-ccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 321 RD-KQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 321 R~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
.. ..+.... .....+++.+++.++..+.+...+.... .....+.+..|++.++|.+-.+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 43 3332211 2346789999999999999988774322 2234566788999999988643
No 55
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=5.8e-06 Score=86.58 Aligned_cols=172 Identities=13% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCcccchhhHHHHHHHhhhcCC--------CeEEEEEeccCCChhhHHHHHHHHHhhhcc--------------------
Q 037173 186 KGLVGVAWRIKEIESLLCIRSA--------GVYVLGIWGIGGIGKTTIAGAVFNKISRCF-------------------- 237 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 237 (617)
+.++|.+.-++.|.+++..+.. -...+.++|++|+|||++|..++..+--..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999999874431 256788999999999999999998632211
Q ss_pred CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCCeEEEEeCCCC--HHhHHHHHcccCCC
Q 037173 238 EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL-----ARKKVLLVFDDVNH--PGQIESLIGCLDEL 310 (617)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~ 310 (617)
+...++.. ......+.+ +..+.+.+ .+++-++|+|+++. ....+.++..+...
T Consensus 85 pD~~~i~~---~~~~i~i~~-----------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAP---EGLSIGVDE-----------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecc---ccccCCHHH-----------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11111110 000011111 12222222 24455888999973 45556676666554
Q ss_pred CCCcEEEEEcCCc-cccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 311 ASGSRVIITTRDK-QVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 311 ~~gs~IlvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.+++.+|++|.+. .+.+.. .....+.+.+++.++..+.+.... + ...+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~--~-----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD--G-----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc--C-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5667666666554 333221 234689999999999998887432 1 11355788999999999755443
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.45 E-value=3.5e-06 Score=94.64 Aligned_cols=170 Identities=23% Similarity=0.325 Sum_probs=100.4
Q ss_pred cCCCcccchhhHH---HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVAWRIK---EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
.-+.|+|.+..+. .+.+.+. .+....+.|+|++|+||||||+.+++.....|. .+.. . ...+.++ +
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~di-r 94 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKDL-R 94 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHHH-H
Confidence 3467899988774 4666664 334567789999999999999999987654442 1110 0 0111111 1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH--cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEE--cCCcc--ccccc-Cc
Q 037173 261 ELLSKLLNDGNARNVESQLNRL--ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIIT--TRDKQ--VLENC-WV 331 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvT--TR~~~--v~~~~-~~ 331 (617)
+++ ....+.+ .+++.+|||||++ +..+.+.+...+. .|..++++ |.++. +.... ..
T Consensus 95 ~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 95 AEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred HHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc
Confidence 111 1111111 2466799999996 4455666665443 35555553 33321 11111 12
Q ss_pred ceEEEeccCChhHHHHHHHHhhhc-----CCCCChhHHHHHHHHHHHccCCch
Q 037173 332 NQIYRMKELVDVDAHKLFCQCAFR-----GGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 332 ~~~~~l~~L~~~ea~~Lf~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
...+.+++++.++...++...+-. +.....-.++..+.|++.+.|..-
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 357899999999999999876531 011122345677888888888754
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.1e-05 Score=86.44 Aligned_cols=190 Identities=14% Similarity=0.149 Sum_probs=110.5
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-ccC--ceEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-CFE--GSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~--~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
..+++||-+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-- .-+ ...-. ...+.-....
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~-------~pCg~C~~C~ 85 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA-------TPCGVCQACR 85 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC-------CCCCccHHHH
Confidence 4567899999999999988643 23467789999999999999999887421 000 00000 0000000000
Q ss_pred HHHHHHh------cCCCCCCHHHHHHHH--------cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC-c
Q 037173 261 ELLSKLL------NDGNARNVESQLNRL--------ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD-K 323 (617)
Q Consensus 261 ~l~~~l~------~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~-~ 323 (617)
.+...-. .......++.+++.+ .++.-++|||+++ +...++.++..+......+++|++|.+ .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 0000000 000011222233222 2344589999997 456677788777655566666665543 3
Q ss_pred ccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 324 QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 324 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.+... ......+++++++.++..+.+...+.... .....+.++.|++.++|.+--+..
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg--i~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--VPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33221 12347899999999999999887763322 122356788899999998854433
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=2.2e-06 Score=75.72 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=71.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc-----cCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC-CCH----HHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC-----FEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNA-RNV----ESQ 278 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~----~~l 278 (617)
.+.+.|+|.+|+|||++++.+++..... -...+|+. .........+...++..+...... ... +.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4688999999999999999999986543 23455666 555558899999999999877555 233 455
Q ss_pred HHHHcCCC-eEEEEeCCCCH---HhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 279 LNRLARKK-VLLVFDDVNHP---GQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 279 ~~~L~~k~-~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.+.+...+ .+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55565554 59999999654 34455544333 567778777664
No 59
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=3.5e-06 Score=92.38 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=109.1
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCce---EEEE-echhhhccCCHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGS---YFAL-DVREAEETGRIKDL 258 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~~~~-~~~~~~~~~~~~~l 258 (617)
...+.++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+...-... +-.+ .+..+.... ..++
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~-~~Dv 90 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR-YVDL 90 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC-ccce
Confidence 34567999999999999998643 2245789999999999999999998632110000 0000 000000000 0000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH--------cCCCeEEEEeCCCCH--HhHHHHHcccCCCCCCcEEEEEcCCcc-ccc
Q 037173 259 QKELLSKLLNDGNARNVESQLNRL--------ARKKVLLVFDDVNHP--GQIESLIGCLDELASGSRVIITTRDKQ-VLE 327 (617)
Q Consensus 259 ~~~l~~~l~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~ 327 (617)
. .+ .......++.+++.+ .+++-++|+|+++.. ...+.++..+......+++|++|.+.. +..
T Consensus 91 l-----Ei-daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 91 L-----EI-DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred E-----EE-eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 00 000011122222221 245669999999743 446666666654455667777765442 221
Q ss_pred c-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 328 N-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 328 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
. ......+.+.+++.++..+.+...+-... .....+.+..|++.++|.+.-+.
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHH
Confidence 1 12235678889999999999887763322 22345678899999999986443
No 60
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.44 E-value=7.5e-06 Score=85.76 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=111.6
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc----cC-----------------ceE
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC----FE-----------------GSY 241 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 241 (617)
..-..++|.+..++.+.+++..+. -...+.++|++|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999886332 24578899999999999999999875321 10 111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEE
Q 037173 242 FALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvT 319 (617)
++.. ........ .+++...+... -..+++-++|+|+++. ....+.+...+......+.+|++
T Consensus 90 ~~~~----~~~~~~~~-~~~l~~~~~~~-----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 90 EIDA----ASNNGVDD-IREILDNVKYA-----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred Eeec----cccCCHHH-HHHHHHHHhcC-----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 1210 00011111 11222111100 0123455899999964 35566676666554556677777
Q ss_pred cCCcc-ccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 320 TRDKQ-VLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 320 TR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
|.+.. +.... .....+++.+++.++..+.+...+-.... ...++.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 65443 22211 12357889999999999988886633221 1234678889999999997665444
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=6.1e-06 Score=90.89 Aligned_cols=188 Identities=14% Similarity=0.079 Sum_probs=111.5
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
.....+||.+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..... . ....+.-.....+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCCCHHHHHH
Confidence 345679999999999999886432 24557899999999999999999874321100 0 0000000000011
Q ss_pred HHHHh------cCCCCCCH---HHHHHH-----HcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-cc
Q 037173 263 LSKLL------NDGNARNV---ESQLNR-----LARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QV 325 (617)
Q Consensus 263 ~~~l~------~~~~~~~~---~~l~~~-----L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v 325 (617)
...-. .......+ ..+.+. ..++.-++|+|+++ +....+.++..+.......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 00000 00000111 122222 23566699999996 5567788877776555666666655554 33
Q ss_pred ccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 326 LEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 326 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
... ......+.+.+++.++..+.+....-... .....+....|++.++|.+--+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 322 12247899999999999999887653221 12234667889999999887433
No 62
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=4.7e-06 Score=89.21 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=101.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC--ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE--GSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKK 286 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~ 286 (617)
...+.|+|..|+|||+|++.+++.+..... .++++. ..++...+...+.... ..++...+.+++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~--~~~~~~~~~~~~-~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH--KEIEQFKNEICQ-N 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh--hHHHHHHHHhcc-C
Confidence 356889999999999999999997654332 233433 2334444444433210 123444444443 4
Q ss_pred eEEEEeCCCC----HHhHHHHHcccCCC-CCCcEEEEEcCCcc---------cccccCcceEEEeccCChhHHHHHHHHh
Q 037173 287 VLLVFDDVNH----PGQIESLIGCLDEL-ASGSRVIITTRDKQ---------VLENCWVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 287 ~LlVLDdv~~----~~~~~~l~~~l~~~-~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
-+||+||+.. ....+.+...+... ..|..||+|+.... +...+...-+..+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 4888999953 22233343333221 34557888876432 1222234457889999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhh
Q 037173 353 AFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRH 387 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~ 387 (617)
+-.......-.+++..-|++.++|.|-.+..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 74322111344678899999999999877665543
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-05 Score=83.44 Aligned_cols=276 Identities=18% Similarity=0.171 Sum_probs=157.5
Q ss_pred ccCCCcccchhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCc--eEEEEechhhhccCCHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG--SYFALDVREAEETGRIKDL 258 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 258 (617)
..|+.+.+|+.+++++...|.. ....+.-+.|+|.+|.|||+.++.+++++...... .++++ .........+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHH
Confidence 3455699999999999998862 22223348899999999999999999997666433 46666 4445677888
Q ss_pred HHHHHHHHhcCCCC-CC----HHHHHHHH--cCCCeEEEEeCCCCH-----HhHHHHHcccCCCCCCcEE--EEEcCCcc
Q 037173 259 QKELLSKLLNDGNA-RN----VESQLNRL--ARKKVLLVFDDVNHP-----GQIESLIGCLDELASGSRV--IITTRDKQ 324 (617)
Q Consensus 259 ~~~l~~~l~~~~~~-~~----~~~l~~~L--~~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~I--lvTTR~~~ 324 (617)
+.+++.++...... .. ...+.+.+ .++.+++|||+++.. +.+-.+....... .++| |..+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 88888887633221 12 24555555 357899999999643 2222333332222 3433 33333332
Q ss_pred c--------ccccCcceEEEeccCChhHHHHHHHHhhh---cCCCCChhHHHHHHHHHHHccCC-chHHHHHhhh--hCC
Q 037173 325 V--------LENCWVNQIYRMKELVDVDAHKLFCQCAF---RGGHLDASYTEVTRKAIKYAHGV-PLALQVLGRH--LCG 390 (617)
Q Consensus 325 v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~a~~--L~~ 390 (617)
. ....+. ..+..+|-+.+|-.+.+..++- ......+..-+.+..++..-+|- =.||..+-.. ++.
T Consensus 168 ~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 2 122222 2378899999999999988763 33334444445555555555542 2344333222 211
Q ss_pred C------CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcccCCcCHHHH----HHhHhhcCC---chH
Q 037173 391 R------SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLLEGEHRDEV----TSFFDASGF---QAK 457 (617)
Q Consensus 391 ~------~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~~~~~~L----~~~w~~~g~---~~~ 457 (617)
+ +.+.-..+.... =..........||.+.|-.+..++....++....+ ..+....+. .-.
T Consensus 247 ~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~ 319 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFS 319 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHH
Confidence 0 112212211111 12234445788999888776655544333444333 233333333 223
Q ss_pred HhHHHHhhCCCceEe
Q 037173 458 IELSVLEDKSLITCL 472 (617)
Q Consensus 458 ~~l~~L~~~sLi~~~ 472 (617)
+.+.+|...|++...
T Consensus 320 ~ii~~L~~lgiv~~~ 334 (366)
T COG1474 320 DIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHhcCeEEee
Confidence 567778888887754
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.40 E-value=1.2e-05 Score=75.98 Aligned_cols=160 Identities=15% Similarity=0.137 Sum_probs=95.0
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceEEEEechhhhccCCH
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSYFALDVREAEETGRI 255 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 255 (617)
.+.+.+..+ .-...+.++|+.|+|||++|..+.+.+... ++...++.. .......
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~~ 78 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIKV 78 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCCH
Confidence 344555322 224678899999999999999999885321 111122210 0001111
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCc-cccccc-Cc
Q 037173 256 KDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDK-QVLENC-WV 331 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~-~~ 331 (617)
.. .+++...+... -..+.+-++|+||++. .+..+.++..+....+.+.+|++|++. .+.... ..
T Consensus 79 ~~-i~~i~~~~~~~-----------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 79 DQ-VRELVEFLSRT-----------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred HH-HHHHHHHHccC-----------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 11 11122111100 0124566899999964 445677777776555667777777654 222211 13
Q ss_pred ceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchH
Q 037173 332 NQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLA 380 (617)
Q Consensus 332 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 380 (617)
...+++.+++.++..+.+.... ...+.+..|++.++|.|..
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~g--------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 147 CQVLPFPPLSEEALLQWLIRQG--------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred cEEeeCCCCCHHHHHHHHHHcC--------CCHHHHHHHHHHcCCCccc
Confidence 3689999999999999887761 1246788999999999853
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=6.7e-06 Score=89.74 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=108.8
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~ 242 (617)
....++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-. |...++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34678999999999999886322 24567899999999999999999874221 111111
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. ......+.+ .++++...... -..+++-++|+|+++. .+..+.++..+......+.+|++|
T Consensus 93 i~----~~~~~~vd~-ir~l~~~~~~~-----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 93 VD----AASNTQVDA-MRELLDNAQYA-----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ee----ccccCCHHH-HHHHHHHHhhC-----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 11 000111111 11111111000 0134566999999974 445677777776555566666655
Q ss_pred CCc-ccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHH
Q 037173 321 RDK-QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVL 384 (617)
Q Consensus 321 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 384 (617)
.+. .+... ......+++++++.++..+.+...+-... .....+.+..|++.++|.+- |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 443 33221 11236789999999999988877653222 12234567889999999886 43333
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=3.6e-05 Score=87.71 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=109.1
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc--c---Cc------------------e
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC--F---EG------------------S 240 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f---~~------------------~ 240 (617)
....+||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.-. . .+ .
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 34679999999999999986432 23567899999999999999999874311 0 00 1
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-----HcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCC
Q 037173 241 YFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNR-----LARKKVLLVFDDVN--HPGQIESLIGCLDELASG 313 (617)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~g 313 (617)
+++. ......+.+ +..+.+. ..++.-++|||+++ +.+..+.|+..+......
T Consensus 92 ~eid----aas~~~Vd~-----------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 92 TEID----AASHGGVDD-----------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred EEec----ccccCCHHH-----------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 1111 000011111 1122221 23455589999997 456677787777765667
Q ss_pred cEEEEEcCC-ccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 314 SRVIITTRD-KQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 314 s~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
+.+|++|.+ ..+.... .....|++..++.++..+++....-... .....+....|++.++|.+..+
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 666665543 3343322 2347899999999999888877652222 1223456778999999988533
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1e-05 Score=87.96 Aligned_cols=191 Identities=17% Similarity=0.127 Sum_probs=108.7
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
..-..++|++..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. .. ..+.-.....+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~----~~-~Cg~C~sCr~i 82 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD----GD-CCNSCSVCESI 82 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC----CC-CCcccHHHHHH
Confidence 34567999999999999988633 2346788999999999999999998742110 100 00 00000000000
Q ss_pred HHHHhc-----C-CCCCCHHHHH---HHH-----cCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCc-cc
Q 037173 263 LSKLLN-----D-GNARNVESQL---NRL-----ARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDK-QV 325 (617)
Q Consensus 263 ~~~l~~-----~-~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v 325 (617)
...... . .....++.++ +.. .+++-++|+|+++. ....+.++..+......+.+|++|... .+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 000000 0 0001122222 211 23344799999964 456677777665444566666555433 33
Q ss_pred ccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHHh
Q 037173 326 LEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVLG 385 (617)
Q Consensus 326 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~a 385 (617)
... ......+++.+++.++....+...+-... .....+.+..+++.++|.+- |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 221 12246789999999999988887663322 11234567889999999775 444433
No 68
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.4e-05 Score=84.68 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=110.0
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc--cCceEEEEechhhhccCCHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC--FEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
..-..++|.+...+.|.+++..+. -...+.++|++|+||||+|..+++.+.-. +...-|..... ...+.-....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHHH
Confidence 345679999999999999886332 23458899999999999999999875321 10000000000 0000000000
Q ss_pred HHHHHHhc-----CC-CCC---CHHHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc-CCc
Q 037173 261 ELLSKLLN-----DG-NAR---NVESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT-RDK 323 (617)
Q Consensus 261 ~l~~~l~~-----~~-~~~---~~~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT-R~~ 323 (617)
.+...... .+ ... .+..+.+.+ .+.+-++|+|+++ +...++.+...+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 00000000 00 001 122222333 2345689999996 3456777777766555666666555 333
Q ss_pred cccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 324 QVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 324 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.+.... .....+++.+++.++..+.+...+-.. ...-..+.++.|++.++|.+--+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 333221 123578899999999988887766321 1223457789999999998864433
No 69
>PF14516 AAA_35: AAA-like domain
Probab=98.34 E-value=0.00027 Score=72.84 Aligned_cols=200 Identities=10% Similarity=0.115 Sum_probs=117.6
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc--cCCHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE--TGRIKDLQ 259 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~ 259 (617)
+...+..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+.....--..+++. +..... ..+....+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHH
Confidence 455667889996666676666421 348899999999999999999998765422334444 333222 23455555
Q ss_pred HHHHHHHhcCC---C------------CCCH-HHHHHHH---cCCCeEEEEeCCCCH----HhHHHHHcccC----CC--
Q 037173 260 KELLSKLLNDG---N------------ARNV-ESQLNRL---ARKKVLLVFDDVNHP----GQIESLIGCLD----EL-- 310 (617)
Q Consensus 260 ~~l~~~l~~~~---~------------~~~~-~~l~~~L---~~k~~LlVLDdv~~~----~~~~~l~~~l~----~~-- 310 (617)
+.+...+...- . .... ..+.+.+ .+++.+|+||+++.. ...+.++..+. ..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 55554443320 0 0011 2222222 268999999999732 11122322221 00
Q ss_pred -C--CCcEE-EEEcCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 311 -A--SGSRV-IITTRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 311 -~--~gs~I-lvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
. ..-++ ++.+....... -.+....++|++++.+|...|...+... .. ....++|...+||+|.-+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHH
Confidence 0 11122 22221111111 1133457899999999999999887522 11 233899999999999999
Q ss_pred HHHhhhhCCC
Q 037173 382 QVLGRHLCGR 391 (617)
Q Consensus 382 ~~~a~~L~~~ 391 (617)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999998653
No 70
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.8e-05 Score=85.18 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=109.8
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc-----Cc------------------e
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF-----EG------------------S 240 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~------------------~ 240 (617)
.-+.++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+.-.. ++ +
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 34679999999999999996332 244678999999999999999998743110 00 0
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCC
Q 037173 241 YFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASG 313 (617)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~g 313 (617)
+.+. .....++.+ +..+.+.+ .+++-++|+|+++ +.+..+.|+..+......
T Consensus 90 ieid----aas~~gvd~-----------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 90 VELD----AASHGGVDD-----------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred EEec----cccccCHHH-----------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 0110 000011111 12222221 2455589999996 456777787777665566
Q ss_pred cEEEEEcC-Ccccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHH
Q 037173 314 SRVIITTR-DKQVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVL 384 (617)
Q Consensus 314 s~IlvTTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 384 (617)
+.+|++|. ...+... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+- ++..+
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG--VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66665554 3333322 12347899999999999988877663322 11234567888999999875 33333
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=5.5e-06 Score=82.05 Aligned_cols=174 Identities=14% Similarity=0.209 Sum_probs=102.3
Q ss_pred CCCcccchhhHHH---HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 185 NKGLVGVAWRIKE---IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 185 ~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
-+++||.+..+.+ |.+++ ..+..+.+.+||++|+||||||+.++...+.+- ..|+. .+....-..-.+.
T Consensus 137 L~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRD 208 (554)
T ss_pred HHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHH
Confidence 3455665554432 33333 345678899999999999999999998754432 34444 2222211122222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEE--EcCCccccc---ccCcceE
Q 037173 262 LLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVII--TTRDKQVLE---NCWVNQI 334 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~v~~---~~~~~~~ 334 (617)
++++. +-...+..+|.+|++|.|. +..+-+.+++.. ..|.-++| ||.++...- ......+
T Consensus 209 ife~a----------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 209 IFEQA----------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred HHHHH----------HHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccce
Confidence 32221 1123457889999999995 445555555443 45665555 666654311 1223478
Q ss_pred EEeccCChhHHHHHHHHhhh--c-CCC---CC-----hhHHHHHHHHHHHccCCch
Q 037173 335 YRMKELVDVDAHKLFCQCAF--R-GGH---LD-----ASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 335 ~~l~~L~~~ea~~Lf~~~~~--~-~~~---~~-----~~~~~~~~~i~~~~~G~PL 379 (617)
+.|++|..++...++.+-.- + ... +- .....+.+-++..|.|-.-
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99999999999998887321 1 111 11 1234567777888888653
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.3e-05 Score=82.44 Aligned_cols=181 Identities=18% Similarity=0.232 Sum_probs=107.5
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc--------cCceEEEEechhhhccCC
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC--------FEGSYFALDVREAEETGR 254 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 254 (617)
..-+.++|.+...+.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... |...+.-. . ......
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCC
Confidence 34567899999999999998633 234688899999999999999998875321 22111111 0 001111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEc-CCcccccc-cC
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITT-RDKQVLEN-CW 330 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTT-R~~~v~~~-~~ 330 (617)
...+ .++...+... -..+++-++++|+++. ...++.+...+......+.+|++| ....+... ..
T Consensus 90 ~~~i-~~l~~~~~~~-----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 90 VDDI-RNLIDQVRIP-----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHH-HHHHHHHhhc-----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1111 1222211100 0123556899999963 344666665554434455555555 33333222 12
Q ss_pred cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 331 VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 331 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
....+++.+++.++....+...+..... .-..+.+..+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 2357899999999999888877643221 123577888999999977643
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=3e-05 Score=85.38 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=112.3
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCc---eEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG---SYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~l~~ 260 (617)
....++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+.-.... ..-+. ..+.-.-..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~c~~C~ 93 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGVGEHCQ 93 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcccHHHH
Confidence 45679999999999999986432 24578899999999999999999874322110 00000 000000001
Q ss_pred HHHHHHhcC------CCCCCHHHHHH---HH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc-CCc
Q 037173 261 ELLSKLLND------GNARNVESQLN---RL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT-RDK 323 (617)
Q Consensus 261 ~l~~~l~~~------~~~~~~~~l~~---~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT-R~~ 323 (617)
.+......+ .....++.+++ .+ .+++-++|+|+++ +....+.|+..+....+.+.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 111100000 00112222222 22 2345589999996 4456777777776555667776555 333
Q ss_pred cccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 324 QVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 324 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.+.... .....+++.+++.++....+...+-... .....+.++.|++.++|.+.-+..
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 332221 2346899999999999999988763222 122346788899999999875543
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=2.3e-05 Score=83.86 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=96.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC--ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE--GSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKK 286 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~ 286 (617)
...+.|+|.+|+|||+|++.+++.+....+ .++|+. ..++..++...+... ......+.++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~----~~~~f~~~~~~~~ 195 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG----KLNEFREKYRKKV 195 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc----cHHHHHHHHHhcC
Confidence 446899999999999999999999766543 234444 123344444433221 2344555555556
Q ss_pred eEEEEeCCCCH---Hh-HHHHHcccCCC-CCCcEEEEEcC-Cccc--------ccccCcceEEEeccCChhHHHHHHHHh
Q 037173 287 VLLVFDDVNHP---GQ-IESLIGCLDEL-ASGSRVIITTR-DKQV--------LENCWVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 287 ~LlVLDdv~~~---~~-~~~l~~~l~~~-~~gs~IlvTTR-~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
-+|++||+... .. -+.+...+... ..|..||+||. .+.- ...+...-++++++.+.+.-.+++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 78999999632 11 12232222111 23557888875 3321 122233457899999999999999888
Q ss_pred hhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 353 AFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
+-... -.-.++++..|++.+.|.--.+.-
T Consensus 276 ~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 276 LEIEH--GELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHhcC--CCCCHHHHHHHHhccccCHHHHHH
Confidence 74321 223356788888888887555443
No 75
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.30 E-value=2.1e-05 Score=83.79 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=95.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC--ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE--GSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKK 286 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~ 286 (617)
...+.|+|++|+|||+|++.+++.+....+ .++++. ..++...+...+... ......+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN----KMEEFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC----CHHHHHHHHHh-C
Confidence 356889999999999999999999766543 234443 122233333333221 23445555544 3
Q ss_pred eEEEEeCCCCH----HhHHHHHcccCCC-CCCcEEEEEcCCc-c--------cccccCcceEEEeccCChhHHHHHHHHh
Q 037173 287 VLLVFDDVNHP----GQIESLIGCLDEL-ASGSRVIITTRDK-Q--------VLENCWVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 287 ~LlVLDdv~~~----~~~~~l~~~l~~~-~~gs~IlvTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
-+|+|||++.. ...+.+...+... ..+..+|+|+... . +...+.....+.+++.+.++-.+++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 48899999632 1122233322211 2455688887642 1 2222333457899999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 353 AFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
+-... ..-.+++...|++.+.|.+-.+.-+
T Consensus 281 ~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 281 AEEEG--LELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHcC--CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 74322 2233677888888888877654433
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.29 E-value=9.7e-06 Score=85.47 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=98.3
Q ss_pred cCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
..+.+.|++..++++.+.+.. +-...+-|.|+|++|+|||++|+.+++.....|- .+. ..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH-----
Confidence 345788999999999887631 1133567899999999999999999987543221 111 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------Hh---HHHHHcccCCC--CCC
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------GQ---IESLIGCLDEL--ASG 313 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~~~--~~g 313 (617)
.+.. ...+.. ...+..+.+.. ...+.+|+||+++.. +. +..+...+... ..+
T Consensus 200 ----~l~~----~~~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 ----ELVQ----KFIGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred ----HHhH----hhccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1110 000000 00111222222 346789999999642 11 22222222211 235
Q ss_pred cEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 314 SRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 314 s~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
..||.||........ ......+++++.+.++-.++|..+..+...... .....+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 667777765432221 123467999999999999999887643222111 11455666676653
No 77
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.28 E-value=2.1e-05 Score=84.82 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=97.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCc--eEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEG--SYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKK 286 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~ 286 (617)
...+.|+|++|+|||+|++.+++.+...++. ++++. ..++...+...+.. .....+.+.+++ .
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~-~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRN----NTMEEFKEKYRS-V 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHc----CcHHHHHHHHhc-C
Confidence 4568999999999999999999998776533 33443 12222233333321 123445555553 4
Q ss_pred eEEEEeCCCCH----HhHHHHHcccCCC-CCCcEEEEEcCCcc---------cccccCcceEEEeccCChhHHHHHHHHh
Q 037173 287 VLLVFDDVNHP----GQIESLIGCLDEL-ASGSRVIITTRDKQ---------VLENCWVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 287 ~LlVLDdv~~~----~~~~~l~~~l~~~-~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
-+|||||++.. ...+.+...+... ..|..||+||.... +...+.....+++++.+.++-.+++...
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 48999999532 1122333322111 23456888876532 1223334467899999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 353 AFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
+-.. ...-.+++.+.|++.+.|..-.+.-+
T Consensus 293 ~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 293 AEEE--GIDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHc--CCCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 7432 22234577888999998887654433
No 78
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.28 E-value=1.5e-06 Score=76.67 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=48.4
Q ss_pred ccEEEcCccccCCCchHHHHHHHHhhC-------CCce----------eecC-CcCCCCcchHHHHHHHHhcceEEEEec
Q 037173 16 HDVFLSFRGEDTRDNFTSHLHYVLSLK-------GIKT----------FVDD-QLIRGDNISRSLLDTIEASSISIIIFS 77 (617)
Q Consensus 16 ~dvFisy~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s 77 (617)
|.|||||++.|.. ..+..|...+... .+.. +.+. +....+.|...|.++|.+|+++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999943 2677777777763 2211 1122 233345788999999999999999999
Q ss_pred CCccCChhhHHHHHHHHHHhhhCCCEEEEEEee
Q 037173 78 ERYASSRWCLDELLKILECKHDYGQIVIPVFYR 110 (617)
Q Consensus 78 ~~y~~s~~c~~El~~~~~~~~~~~~~vipi~~~ 110 (617)
++-..|.|+.+|+..+++ .+..||.|...
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~ 108 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP 108 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence 999999999999998886 34457777544
No 79
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=4.5e-05 Score=83.40 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=111.7
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc---------------------CceEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF---------------------EGSYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~ 242 (617)
....++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-... ...++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3467899998888888888633 2246788999999999999999998743110 00111
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. ......+..+ +.+...+.. .-..+++-++|+|+++. .+..+.|+..+........+|++|
T Consensus 93 Id----~a~~~~Id~i-R~L~~~~~~-----------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 93 ID----GASNRGIDDA-KRLKEAIGY-----------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred Ee----cccccCHHHH-HHHHHHHHh-----------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 11 0001111111 111111100 01135567999999963 456677777765444556666655
Q ss_pred CC-cccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc-hHHHHHhhhh
Q 037173 321 RD-KQVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP-LALQVLGRHL 388 (617)
Q Consensus 321 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~a~~L 388 (617)
.+ ..+... ......+++.+++.++..+.+...+.... .....+.++.|++.++|.+ .|+..+...+
T Consensus 157 t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 157 TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 54 333221 11235789999999999988887664322 1233567888999999976 5666665443
No 80
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.26 E-value=1.5e-05 Score=91.05 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=88.5
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-----c-CceEEEEechhhhcc----C
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-----F-EGSYFALDVREAEET----G 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~~~~~~~~~~~~----~ 253 (617)
.-++++||+.+++.+.+.|... ...-+.++|++|+|||++|+.+++++... + ...+|..++...... .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g 257 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRG 257 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccc
Confidence 3467999999999999988633 23356799999999999999999986432 1 334554432222110 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-----------HhHHHHHcccCCCCCCcEEEEEcC
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-----------GQIESLIGCLDELASGSRVIITTR 321 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IlvTTR 321 (617)
....- +..+.+.+ ..++.+|++|+++.. +.-+.+.+.+. ...-++|-+|.
T Consensus 258 ~~e~~----------------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt 319 (731)
T TIGR02639 258 DFEER----------------LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTT 319 (731)
T ss_pred hHHHH----------------HHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecC
Confidence 11111 22233333 245789999999622 11233333332 12234554444
Q ss_pred Cccccc------c-cCcceEEEeccCChhHHHHHHHHhh
Q 037173 322 DKQVLE------N-CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 322 ~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.++... . ......+++++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 0 0123578999999999999998654
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.26 E-value=1.3e-05 Score=92.34 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=100.7
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhc----c
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEE----T 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~----~ 252 (617)
..-++++||+.++.++...|... ...-+.++|++|+||||+|+.+++++.... ...+|..+++.... .
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 34568999999999999988633 233566999999999999999999864331 23345443332211 1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-------H--hH-HHHHcccCCCCCCcEEEEEcCC
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-------G--QI-ESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------~--~~-~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.....-+++++..+. + .+++.+|++|++... . +. +.+.+.+. ...-++|-||..
T Consensus 262 ge~e~~lk~ii~e~~------------~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~ 325 (852)
T TIGR03345 262 GEFENRLKSVIDEVK------------A--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTW 325 (852)
T ss_pred hHHHHHHHHHHHHHH------------h--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCH
Confidence 111122222222110 0 246899999999532 1 11 12333332 223456666654
Q ss_pred cccccc-------cCcceEEEeccCChhHHHHHHHHhhhc--CCCCChhHHHHHHHHHHHccCC
Q 037173 323 KQVLEN-------CWVNQIYRMKELVDVDAHKLFCQCAFR--GGHLDASYTEVTRKAIKYAHGV 377 (617)
Q Consensus 323 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~i~~~~~G~ 377 (617)
+...+. ......+.+++++.++..+++....-. .........+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 322111 112368999999999999997554411 1111223355666777777654
No 82
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=6.7e-05 Score=83.38 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=111.2
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELL 263 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (617)
.-+.++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-+ ...+.-.....+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~ 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIA 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHh
Confidence 34679999999999998886432 24567899999999999999999875311100000 0000001111111
Q ss_pred HHHhcC-----C-CCCCHH---HHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC-cccc
Q 037173 264 SKLLND-----G-NARNVE---SQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD-KQVL 326 (617)
Q Consensus 264 ~~l~~~-----~-~~~~~~---~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~v~ 326 (617)
.....+ . ....++ .+.+.+ .+++-++|+|+++ +.+..+.|+..+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111000 0 011122 222222 2345689999996 445677777666554556666666543 2222
Q ss_pred ccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 327 ENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
... .....+++.+++..+....+...+..... ....+.+..|++.++|.+..+....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 211 12357889999999998888877643221 1234678899999999997554443
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.25 E-value=1.1e-05 Score=80.38 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=82.2
Q ss_pred CcccchhhHHHHHHHhhh-------------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc--CceEEEEechhhhc
Q 037173 187 GLVGVAWRIKEIESLLCI-------------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF--EGSYFALDVREAEE 251 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~ 251 (617)
.++|.+...++|.+.... ..+....+.++|++|+||||+|+.+++.+...- ....++. ++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VE- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ec-
Confidence 477877776666543320 112356788999999999999999998753211 1112222 10
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHc-CCCeEEEEeCCCC----------HHhHHHHHcccCCCCCCcEEEEEc
Q 037173 252 TGRIKDLQKELLSKLLNDGNARNVESQLNRLA-RKKVLLVFDDVNH----------PGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 252 ~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~----------~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
..++. ....+. ....+.+.+. ...-+|++|+++. .+.++.+...+........+++++
T Consensus 82 ---~~~l~----~~~~g~----~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 82 ---RADLV----GEYIGH----TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred ---HHHhh----hhhccc----hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 01111 111000 0112222221 1235899999964 234556665554434444556665
Q ss_pred CCccccc------cc--CcceEEEeccCChhHHHHHHHHhhh
Q 037173 321 RDKQVLE------NC--WVNQIYRMKELVDVDAHKLFCQCAF 354 (617)
Q Consensus 321 R~~~v~~------~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 354 (617)
....... .. .....+.+++++.++-.+++...+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432200 00 1235688999999999999987763
No 84
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.7e-05 Score=84.05 Aligned_cols=190 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc--cCceEEEEechhhhccCCHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC--FEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
....++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|..+++.+--. .+...|..... ...+.-.....
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHHHH
Confidence 4567999999999999988632 224568899999999999999999874221 11011111000 00000000000
Q ss_pred HHHHHh------cCCCCCCH---HHHHHHH-----cCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEc-CCcc
Q 037173 262 LLSKLL------NDGNARNV---ESQLNRL-----ARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITT-RDKQ 324 (617)
Q Consensus 262 l~~~l~------~~~~~~~~---~~l~~~L-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTT-R~~~ 324 (617)
+..... .......+ ..+.+.+ .+.+-++|+|+++. ....+.|+..+..-...+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 000000 00001112 2222222 24455899999964 455677777776545556655554 3333
Q ss_pred cccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 325 VLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 325 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
+... ......+++.+++.++....+...+-... .....+.++.|++.++|..-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHH
Confidence 3322 22357899999999999888877653221 11235678899999999665
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.23 E-value=1.8e-05 Score=81.36 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=86.8
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
|...+.++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++..... ...+. .+. .....+...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~~~~i~~~ 87 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CRIDFVRNR 87 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-ccHHHHHHH
Confidence 344577899999999999998632 235677789999999999999999875322 22232 111 112211111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH---HhHHHHHcccCCCCCCcEEEEEcCCcccc-ccc-CcceEEE
Q 037173 262 LLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP---GQIESLIGCLDELASGSRVIITTRDKQVL-ENC-WVNQIYR 336 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~~~-~~~~~~~ 336 (617)
+ ...... ..+.+.+-++|+|+++.. +..+.+...+.....++++|+||...... +.. .....+.
T Consensus 88 l-~~~~~~----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 88 L-TRFAST----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred H-HHHHHh----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 1 111100 001234568999999743 22333433344445678888888654211 110 1224677
Q ss_pred eccCChhHHHHHHHH
Q 037173 337 MKELVDVDAHKLFCQ 351 (617)
Q Consensus 337 l~~L~~~ea~~Lf~~ 351 (617)
++..+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 777788877766543
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.9e-05 Score=86.12 Aligned_cols=186 Identities=12% Similarity=0.136 Sum_probs=107.7
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh----ccCCHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE----ETGRIKDL 258 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~----~~~~~~~l 258 (617)
..-..++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.++..+-..-....+-. +.... ...++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDII-- 90 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEE--
Confidence 34467899999999999998633 23567789999999999999999987421100000000 00000 000000
Q ss_pred HHHHHHHHhcCCCCCC---HHHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc-CCccccc
Q 037173 259 QKELLSKLLNDGNARN---VESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT-RDKQVLE 327 (617)
Q Consensus 259 ~~~l~~~l~~~~~~~~---~~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~v~~ 327 (617)
.+ ....... +..+.+.. .+++-++|+|+++ +...+..++..+......+.+|++| +...+..
T Consensus 91 ------ei-daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 91 ------EM-DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred ------EE-eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00 0000011 22222222 2456699999996 4456777777766544555555444 4443332
Q ss_pred c-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 328 N-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 328 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
. ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+--+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 2 12346899999999999988887653222 1223456788999999977533
No 87
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.20 E-value=4.4e-05 Score=73.67 Aligned_cols=259 Identities=15% Similarity=0.157 Sum_probs=138.9
Q ss_pred ccCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
..-..|+|.++-.++|.-.+.. ..+..-.+.++|++|.||||||.-+++....++. +..........
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~g------ 92 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPG------ 92 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChh------
Confidence 3456799999988888877752 2334678999999999999999999998654432 11000011111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH--HhHHHHHcccCC--------CCCCc-----------EEEE
Q 037173 260 KELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP--GQIESLIGCLDE--------LASGS-----------RVII 318 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~--------~~~gs-----------~Ilv 318 (617)
++..+...|+... ++.+|.+... ..-+.+.+...+ .++++ -|=.
T Consensus 93 --------------DlaaiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 93 --------------DLAAILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred --------------hHHHHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 1222222223232 5667887532 111222222111 12333 3446
Q ss_pred EcCCccccccc--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHH
Q 037173 319 TTRDKQVLENC--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVW 396 (617)
Q Consensus 319 TTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w 396 (617)
|||.-.+.... ...-+.+++-.+.+|-.+...+.+.. -.-+..++.+.+|+++..|-|--..-+-+..+. +
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----f 230 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVRD-----F 230 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHHH-----H
Confidence 88865443322 23456788899999999999887722 222334577899999999999654444333321 1
Q ss_pred HHHHHHHccCCC----chHHHHHHHcHhcCChhHHHHHhhhhccc-CC-cCHHHHHHhHhhcCCchH-HhHHHHhhCCCc
Q 037173 397 ESAMRKLEIIPH----VDILKVLKISYDSLDDSQKNVFLDIACLL-EG-EHRDEVTSFFDASGFQAK-IELSVLEDKSLI 469 (617)
Q Consensus 397 ~~~l~~l~~~~~----~~i~~~l~~sy~~L~~~~k~~fl~la~fp-~~-~~~~~L~~~w~~~g~~~~-~~l~~L~~~sLi 469 (617)
..+... .... +.....|..-=..|+...++.+..+.-.+ .+ +-.+.+......+..-.+ .+=--|++.|++
T Consensus 231 a~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi 308 (332)
T COG2255 231 AQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFI 308 (332)
T ss_pred HHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchh
Confidence 110000 0000 11122222223345555555554444333 22 666666665544332222 233357788888
Q ss_pred eEe-CCE
Q 037173 470 TCL-NNQ 475 (617)
Q Consensus 470 ~~~-~~~ 475 (617)
+.. .|+
T Consensus 309 ~RTpRGR 315 (332)
T COG2255 309 QRTPRGR 315 (332)
T ss_pred hhCCCcc
Confidence 876 444
No 88
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=5.7e-05 Score=81.53 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=108.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh---c--cCc----------------eEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR---C--FEG----------------SYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---~--f~~----------------~~~ 242 (617)
....++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.++..+.. . .++ ...
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 34678999999999999996432 3456778999999999999999987431 0 011 111
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcE
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSR 315 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~ 315 (617)
+. .+....+. ++..+.+.. .+++-++|+|+++ +.+..+.+...+....+...
T Consensus 93 id----aas~~gvd-----------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 93 ID----AASNRGID-----------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred Ee----CccCCCHH-----------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11 00001111 112222222 3456699999996 34556677666655445555
Q ss_pred EEEEc-CCcccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 316 VIITT-RDKQVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 316 IlvTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
+|++| +...+... ......+.+.+++.++....+...+-... -....+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554 33332221 12235789999999999988887663222 12234667889999999876554443
No 89
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.16 E-value=4.4e-06 Score=78.53 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 187 GLVGVAWRIKEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.|+||+++++++...+. ......+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233457899999999999999999999997776
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=5.8e-05 Score=80.91 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=106.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-c-----Cc----------------eE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-F-----EG----------------SY 241 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~----------------~~ 241 (617)
.-+.++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+... - .+ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 45679999999999999886332 24668899999999999999999874221 0 00 01
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEE
Q 037173 242 FALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvT 319 (617)
.+. .....++..+. ++...+. ..-..+.+-++|+|+++. .+..+.+...+......+.+|++
T Consensus 94 ~i~----g~~~~gid~ir-~i~~~l~-----------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 94 EID----GASHRGIEDIR-QINETVL-----------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred Eee----ccccCCHHHHH-HHHHHHH-----------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 111 00001111111 1111110 000125667899999963 44566666666554556666666
Q ss_pred cCC-cccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 320 TRD-KQVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 320 TR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
|.. ..+... ......+++.+++.++..+.+...+-... .....+.++.|++.++|.+-
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLR 217 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 643 222222 12346789999999999988887653221 12335678899999999775
No 91
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=8.9e-05 Score=80.14 Aligned_cols=184 Identities=16% Similarity=0.131 Sum_probs=111.1
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hccC-------------------ceEE
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RCFE-------------------GSYF 242 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~-------------------~~~~ 242 (617)
..-+.++|-+...+.|...+..+ .-..++.++|+.|+||||+|+.+++.+- .... ..++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 34567999999999999988633 2345678999999999999999998742 1110 0011
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
.. . ......+..+.. +....... -..+++-++|+|+++ +.+..+.++..+....+.+++|++|
T Consensus 90 el--d-aas~~gId~IRe-lie~~~~~-----------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 90 EM--D-AASNRGIDDIRE-LIEQTKYK-----------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred Ee--c-cccccCHHHHHH-HHHHHhhC-----------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 00 0 000111222111 11110000 001345589999996 4456777777776556677777776
Q ss_pred CCcc-cccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 321 RDKQ-VLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 321 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.+.. +... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+--+..+
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 6532 2111 11246889999999999998877663322 1223567889999999998644433
No 92
>PRK06620 hypothetical protein; Validated
Probab=98.14 E-value=2.2e-05 Score=75.50 Aligned_cols=135 Identities=12% Similarity=0.017 Sum_probs=80.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
+.+.|+|++|+|||+|++.+++... ..++. ...... +..+ ..-++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~------~~~~~~-----------------------~~~~-~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIK------DIFFNE-----------------------EILE-KYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcc------hhhhch-----------------------hHHh-cCCEE
Confidence 5689999999999999998776532 12221 000000 0111 23478
Q ss_pred EEeCCCCHH--hHHHHHcccCCCCCCcEEEEEcCCccc-------ccccCcceEEEeccCChhHHHHHHHHhhhcCCCCC
Q 037173 290 VFDDVNHPG--QIESLIGCLDELASGSRVIITTRDKQV-------LENCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLD 360 (617)
Q Consensus 290 VLDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 360 (617)
++||++..+ .+-.+...+. ..|..||+|++.+.. ...+...-++++++++.++-.+++.+.+... .-
T Consensus 90 liDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 899996432 2223332222 356689999875532 1122334579999999999888887776321 11
Q ss_pred hhHHHHHHHHHHHccCCchHHHH
Q 037173 361 ASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 361 ~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.-.+++.+-|++.+.|.--.+.-
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHHH
Confidence 23356777788887776554443
No 93
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.14 E-value=2e-07 Score=82.61 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCC
Q 037173 519 GTEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAEN 594 (617)
Q Consensus 519 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~ 594 (617)
..+++|.+.+-+. ...+.+.-|..++.|.||||..+... ...||..+ .+..||-|.|..++++.| +++|.|
T Consensus 77 sl~klr~lnvgmn----rl~~lprgfgs~p~levldltynnl~-e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~ 151 (264)
T KOG0617|consen 77 SLPKLRILNVGMN----RLNILPRGFGSFPALEVLDLTYNNLN-ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTN 151 (264)
T ss_pred hchhhhheecchh----hhhcCccccCCCchhhhhhccccccc-cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcc
Confidence 4556666665544 34556778899999999999877553 44789988 888999999999999998 999999
Q ss_pred eeEEecCCCCccccCCccccc
Q 037173 595 LVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i~~L 615 (617)
||.|.+|.+.+-.||++|+.|
T Consensus 152 lqil~lrdndll~lpkeig~l 172 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPKEIGDL 172 (264)
T ss_pred eeEEeeccCchhhCcHHHHHH
Confidence 999999999999999998765
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=5.7e-05 Score=80.68 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=89.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
...+.|+|++|+|||+|++.+++.+......++++. ...+...+...+.. ...+..++.++ ..-+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~----~~~~~f~~~~~-~~dv 205 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRS----GEMQRFRQFYR-NVDA 205 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhc----chHHHHHHHcc-cCCE
Confidence 356889999999999999999998765444445554 12223333333321 12233444443 3458
Q ss_pred EEEeCCCCH----HhHHHHHcccCCC-CCCcEEEEEcCCc-c--------cccccCcceEEEeccCChhHHHHHHHHhhh
Q 037173 289 LVFDDVNHP----GQIESLIGCLDEL-ASGSRVIITTRDK-Q--------VLENCWVNQIYRMKELVDVDAHKLFCQCAF 354 (617)
Q Consensus 289 lVLDdv~~~----~~~~~l~~~l~~~-~~gs~IlvTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 354 (617)
|++||+... ...+.+...+... ..|..||+||... . +...+.....+.+++++.++-.+++.+.+-
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 889998532 1122333222211 2456788888542 1 122333446889999999999999988773
Q ss_pred cCCCCChhHHHHHHHHHHHccCCc
Q 037173 355 RGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
... ..-.+++..-|+..+.|.-
T Consensus 286 ~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 286 ALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HcC--CCCCHHHHHHHHHhcCCCH
Confidence 321 2223456666777666554
No 95
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.11 E-value=6.9e-05 Score=83.48 Aligned_cols=199 Identities=17% Similarity=0.087 Sum_probs=102.4
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh--cc---CceEEEEe-chhhhccCCHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR--CF---EGSYFALD-VREAEETGRIK 256 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~~-~~~~~~~~~~~ 256 (617)
...+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++.... .+ ...-|+.. .... ..+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~~d~~ 226 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--RWDPR 226 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--cCCHH
Confidence 3446789999999988877642 33457999999999999999999876432 11 12233321 1111 11111
Q ss_pred HHHHHHH---------------HHHhcC-------------------CCCC---CHHHHHHHHcCCCeEEEEeCCCCH--
Q 037173 257 DLQKELL---------------SKLLND-------------------GNAR---NVESQLNRLARKKVLLVFDDVNHP-- 297 (617)
Q Consensus 257 ~l~~~l~---------------~~l~~~-------------------~~~~---~~~~l~~~L~~k~~LlVLDdv~~~-- 297 (617)
.+...++ ...+.. .... ....+...++++++.++-|+.|..
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 1111111 000000 0000 013444455555555554444321
Q ss_pred HhHHHHHcccCCCCCCcEEEE--EcCCccccc-cc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 037173 298 GQIESLIGCLDELASGSRVII--TTRDKQVLE-NC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKY 373 (617)
Q Consensus 298 ~~~~~l~~~l~~~~~gs~Ilv--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~ 373 (617)
..|+.+...+....+...+++ ||++..... .. .....+.+.+++.++.++++...+-... ..-..++.+.|.+.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~--v~ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN--VHLAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHC
Confidence 223333333333233334444 566543211 11 1224678999999999999998763221 11124556666666
Q ss_pred ccCCchHHHHHhhh
Q 037173 374 AHGVPLALQVLGRH 387 (617)
Q Consensus 374 ~~G~PLai~~~a~~ 387 (617)
+..-+-++..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 65555666655444
No 96
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.10 E-value=2.4e-05 Score=76.22 Aligned_cols=181 Identities=16% Similarity=0.167 Sum_probs=114.0
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh-h-hccCceEEEEechhhhccCCHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI-S-RCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~-~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
|...+.++|.+..+..|.+.+.. ...+....+|++|.|||+-|..++..+ . +-|++++.-.+ .+...++.-+-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchh
Confidence 34457799999999999998863 567889999999999999999999873 2 34555543221 12222221000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH------cCCC-eEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcccccc--
Q 037173 260 KELLSKLLNDGNARNVESQLNRL------ARKK-VLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQVLEN-- 328 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L------~~k~-~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~-- 328 (617)
..+ .+.+.+.... ..++ -++|||+++. .+.|..+...+......++.++.+..-.....
T Consensus 107 ~Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 EKI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hhh----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 000 0111111111 1133 3789999974 57788888888776777776555443221111
Q ss_pred cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 329 CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 329 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
.....-|..++|..++...-+...+-.. .-+-..+..+.|++.++|---
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E--~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKE--GVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCcHH
Confidence 1122457889999999998888877332 233446778899999998644
No 97
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00027 Score=77.58 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=111.5
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-----cCceEEEEechhhhcc--CCH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-----FEGSYFALDVREAEET--GRI 255 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~--~~~ 255 (617)
..-..++|-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +++... ......... .++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C-~~C~~i~~~~~~dv 90 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC-SSCKSIDNDNSLDV 90 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc-hHHHHHHcCCCCCe
Confidence 34567999999999999999643 235678899999999999999999874311 111000 000000000 000
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHH---HHH-----HcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-c
Q 037173 256 KDLQKELLSKLLNDGNARNVESQ---LNR-----LARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-Q 324 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~~~~~~~l---~~~-----L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~ 324 (617)
.. +.+ .....++.+ .+. ..+++-++|+|+++ +...++.++..+....+.+.+|++|... .
T Consensus 91 ~~--------idg-as~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 91 IE--------IDG-ASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred EE--------ecC-cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 00 000 000112222 211 13456689999996 4456777877776555667776666442 2
Q ss_pred cccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 325 VLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 325 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
+... ......+++.+++.++..+.+...+.... ....++.+..|++.++|.+-.+..
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2221 12235789999999999888887664322 223456788899999998864433
No 98
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.10 E-value=4.1e-05 Score=88.55 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=86.7
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-c-----CceEEEEechhhhc----cCC
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-F-----EGSYFALDVREAEE----TGR 254 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~~~~~~~~~~~----~~~ 254 (617)
-++++||+++++++.++|.... ..-+.++|++|+|||++|+.++.++... - ...+|..+...... ...
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 3569999999999999997432 3355799999999999999999986432 1 24566554332211 011
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCHH---------hH-HHHHcccCCCCCCcEEEEEcCCc
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHPG---------QI-ESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~---------~~-~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
.++-+ ..+.+.+ ..++.+|++|+++..- .. +.+.+.+. ...-++|.+|..+
T Consensus 256 ~e~rl----------------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ 317 (821)
T CHL00095 256 FEERL----------------KRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLD 317 (821)
T ss_pred HHHHH----------------HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHH
Confidence 11111 2222222 3467899999995211 12 22332322 2234555555544
Q ss_pred cccc------c-cCcceEEEeccCChhHHHHHHHHh
Q 037173 324 QVLE------N-CWVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 324 ~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
.... . ......+.+...+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3211 1 123356788899999988887653
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00045 Score=76.81 Aligned_cols=191 Identities=14% Similarity=0.075 Sum_probs=109.9
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
.-..++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+... ...... ...+.-...+.+
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~~i 84 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCRAI 84 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHHHH
Confidence 34678999999999999987432 23577899999999999999999974321 110000 000000111111
Q ss_pred HHHHhc------CCCCCCHHHHHHH---H-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-cc
Q 037173 263 LSKLLN------DGNARNVESQLNR---L-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QV 325 (617)
Q Consensus 263 ~~~l~~------~~~~~~~~~l~~~---L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v 325 (617)
...... ......++.+++. + .+++-++|+|+++ +.+..+.|+..+......+.+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 111000 0011122222222 2 2445589999997 4456777777776544556555555433 33
Q ss_pred cccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 326 LENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
.... .....+++..++.++....+...+.... .....+.+..|++.++|.+..+..+.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg--i~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES--IEIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 2346788889999998888877663321 11224568899999999886554433
No 100
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.09 E-value=3.9e-05 Score=82.43 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=90.0
Q ss_pred cCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc-----CceEEEEech
Q 037173 184 ENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF-----EGSYFALDVR 247 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~ 247 (617)
.-..+.|.+..++++.+.+.. +-...+-+.|+|++|+|||++|+.+++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345678899999998886531 112355689999999999999999999865442 2233433 11
Q ss_pred hh--hcc--CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCCeEEEEeCCCCH---------H-----hHHHHHcccC
Q 037173 248 EA--EET--GRIKDLQKELLSKLLNDGNARNVESQLNR-LARKKVLLVFDDVNHP---------G-----QIESLIGCLD 308 (617)
Q Consensus 248 ~~--~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~---------~-----~~~~l~~~l~ 308 (617)
.. ... .......+.++ ...++. ..+++++|+||+++.. . .+..++..+.
T Consensus 259 ~~eLl~kyvGete~~ir~iF------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIF------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred chhhcccccchHHHHHHHHH------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 00 000 00011111111 111111 1357899999999632 1 1233443333
Q ss_pred CC--CCCcEEEEEcCCccccc-c----cCcceEEEeccCChhHHHHHHHHhh
Q 037173 309 EL--ASGSRVIITTRDKQVLE-N----CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 309 ~~--~~gs~IlvTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.. ..+..||.||....... . ...+..++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 22 23445666665543322 1 1335678999999999999998876
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=0.0001 Score=80.30 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=93.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccC--ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFE--GSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV 287 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~ 287 (617)
..+.|+|..|+|||.|++.+++.....+. .++++. ..++..++...+... ....+++.+++ .=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~----~~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG----KGDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc----cHHHHHHHhhc-CC
Confidence 45899999999999999999998765432 234444 223333333332211 12344444443 34
Q ss_pred EEEEeCCCCH---Hh-HHHHHcccCCC-CCCcEEEEEcCCcc---------cccccCcceEEEeccCChhHHHHHHHHhh
Q 037173 288 LLVFDDVNHP---GQ-IESLIGCLDEL-ASGSRVIITTRDKQ---------VLENCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 288 LlVLDdv~~~---~~-~~~l~~~l~~~-~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
+|||||+... +. -+.++..++.. ..|..|||||+... +...+...-++.|++.+.+.-.+++.+.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999532 11 12333332211 34567888887531 22233445678999999999999999887
Q ss_pred hcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 354 FRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
-... .....++++-|++.+.+..-.|.
T Consensus 460 ~~r~--l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 460 VQEQ--LNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HhcC--CCCCHHHHHHHHHhccCCHHHHH
Confidence 4322 22335677777777776654443
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.06 E-value=6.9e-05 Score=86.65 Aligned_cols=150 Identities=19% Similarity=0.123 Sum_probs=86.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhc----cC
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEE----TG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~----~~ 253 (617)
.-++++||+.++.++.+.|.... ..-+.++|++|+|||++|..++.++.... ...+|..++...-. ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g 253 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 253 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhh
Confidence 34679999999999999996432 33566999999999999999999864321 23444443322111 01
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH--cCCCeEEEEeCCCCHH----------hHHHHHcccCCCCCCcEEEEEcC
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL--ARKKVLLVFDDVNHPG----------QIESLIGCLDELASGSRVIITTR 321 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~----------~~~~l~~~l~~~~~gs~IlvTTR 321 (617)
....-++. +.+.+ .+++.+|++|++.... .-+.+.+.+. ...-++|-+|.
T Consensus 254 ~~e~~lk~----------------~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt 315 (857)
T PRK10865 254 EFEERLKG----------------VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATT 315 (857)
T ss_pred hhHHHHHH----------------HHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCC
Confidence 11111222 22222 2468999999996331 1222333332 22345555554
Q ss_pred Ccccccc-------cCcceEEEeccCChhHHHHHHHHhh
Q 037173 322 DKQVLEN-------CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 322 ~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.+..... ......+.+...+.++..+++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 4432110 0122356677778899988886544
No 103
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00037 Score=77.49 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=108.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-----------------------ccCce
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-----------------------CFEGS 240 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-----------------------~f~~~ 240 (617)
.-+.++|.+...+.|..++..+ .-...+.++|+.|+||||+|..++..+.- +|+ .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~ 92 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-I 92 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-e
Confidence 3467999999999999998633 22456889999999999999999887421 111 0
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEE
Q 037173 241 YFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVII 318 (617)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~Ilv 318 (617)
..+. ......+.++. +++.++... -..+++=++|+|+++ +....+.|+..+......+.+|+
T Consensus 93 ~~ld----~~~~~~vd~Ir-~li~~~~~~-----------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 93 HELD----AASNNSVDDIR-NLIEQVRIP-----------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EEec----ccccCCHHHHH-HHHHHHhhC-----------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 1111 00011111111 111111000 012344588999996 44567777777765556666665
Q ss_pred Ec-CCcccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 319 TT-RDKQVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 319 TT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
+| ....+... ......+++.+++.++....+...+-... -....+.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 54 44444332 12346799999999999998887663322 1223456888999999977644
No 104
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00036 Score=71.16 Aligned_cols=189 Identities=13% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-h--------------ccCceEEEEechhhh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-R--------------CFEGSYFALDVREAE 250 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~--------------~f~~~~~~~~~~~~~ 250 (617)
..++|.+...+.+.+.+..+ .-.+...++|+.|+||+++|..+++.+- . .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46899999999999988633 2247899999999999999999998742 1 22333444311000
Q ss_pred ccCCHHHHHHHHHHHHh--cC-CCCCCHHH---HHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEE
Q 037173 251 ETGRIKDLQKELLSKLL--ND-GNARNVES---QLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVI 317 (617)
Q Consensus 251 ~~~~~~~l~~~l~~~l~--~~-~~~~~~~~---l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~Il 317 (617)
...... ...+...+ .. .....++. +.+.+ .+++-++|+|+++ +....+.++..+..-. .+.+|
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000000 00001111 00 11223333 33333 3456689999996 4456677777765444 44555
Q ss_pred EEc-CCccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 318 ITT-RDKQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 318 vTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
++| ....+.+.. .....+++.+++.++..+.+...... .. .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~---~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EI---LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--cc---chhHHHHHHHHcCCCHHHHHHHH
Confidence 444 443333322 23478999999999999999876421 11 11124678999999997655433
No 105
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.0002 Score=78.95 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=107.9
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-ccCceEEEEechhhhccCCHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-CFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
..-..++|.+...+.|.+++..+. -.+.+.++|+.|+|||++|+.+++.+-. +-...- +.+.-.....
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~----------pC~~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE----------PCNECEICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----------CCCccHHHHH
Confidence 345779999999999999987432 3466788999999999999999987421 100000 0000000001
Q ss_pred HHHHHhc------CCCCCCH---HHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc-CCcc
Q 037173 262 LLSKLLN------DGNARNV---ESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT-RDKQ 324 (617)
Q Consensus 262 l~~~l~~------~~~~~~~---~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~ 324 (617)
+...... ......+ ..+.+.. .++.-++|+|+++ +...+..++..+......+.+|++| ....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 1000000 0000112 2232322 3455688999997 4456777777766544555555554 3333
Q ss_pred ccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 325 VLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
+.... .....+++.+++.++..+.+...+-.... ....+.+..|++.++|.+..+
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 32221 23467889999999999888876632221 123466788888999887643
No 106
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.04 E-value=0.00041 Score=66.61 Aligned_cols=122 Identities=17% Similarity=0.300 Sum_probs=73.8
Q ss_pred cccCCCcccchhhHHHHHHHhh--hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLC--IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
+...+.++|.+.+.+.|.+-.. .......-+.+||..|.|||+|++.+.+.....- .-+..+.. ..-.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k-~~L~------ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSK-EDLG------ 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECH-HHhc------
Confidence 4556789999999998876432 1223455678899999999999999999865532 22221111 1111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH--cCCCeEEEEeCCC---CHHhHHHHHcccC----CCCCCcEEEEEcCCccccc
Q 037173 260 KELLSKLLNDGNARNVESQLNRL--ARKKVLLVFDDVN---HPGQIESLIGCLD----ELASGSRVIITTRDKQVLE 327 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~---~~~~~~~l~~~l~----~~~~gs~IlvTTR~~~v~~ 327 (617)
++..+.+.+ +..+++|++||+. +......+...+. ....+..|..||.-++..+
T Consensus 93 --------------~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 93 --------------DLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred --------------cHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 223344444 3468999999993 3444555554443 2234455666666555444
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.01 E-value=7.9e-05 Score=86.48 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=87.1
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhc----cC
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEE----TG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~----~~ 253 (617)
.-++++||+.++.++...|.... ..-+.++|++|+|||++|..++.++...+ ...+|..++...-. ..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g 248 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG 248 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh
Confidence 34679999999999999996432 34556899999999999999999865432 23444443222110 00
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHc--CCCeEEEEeCCCCHH----------hHHHHHcccCCCCCCcEEEEEcC
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRLA--RKKVLLVFDDVNHPG----------QIESLIGCLDELASGSRVIITTR 321 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~----------~~~~l~~~l~~~~~gs~IlvTTR 321 (617)
.... .+..+.+.+. +++.+|++|++.... ..+.+.+.+. ...-++|-+|.
T Consensus 249 ~~e~----------------~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt 310 (852)
T TIGR03346 249 EFEE----------------RLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATT 310 (852)
T ss_pred hHHH----------------HHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCc
Confidence 1111 1122223332 468999999996321 1222322221 22334555554
Q ss_pred Cccccc-------ccCcceEEEeccCChhHHHHHHHHhh
Q 037173 322 DKQVLE-------NCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 322 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.+.... .......+.++..+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 433211 01123467899999999999887653
No 108
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.00 E-value=0.00032 Score=74.05 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=127.0
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLV 290 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlV 290 (617)
++.|.|+-++||||+++.+.....+. .+++...........+.+...... +.-..++.+++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~----------------~~~~~~~~yif 99 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYI----------------ELKEREKSYIF 99 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHH----------------HhhccCCceEE
Confidence 99999999999999997776654443 555552222222222222221111 11112778999
Q ss_pred EeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCccccccc------CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHH
Q 037173 291 FDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLENC------WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYT 364 (617)
Q Consensus 291 LDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 364 (617)
||.|.....|...+..+...++. +|++|+-+....... +....+++-||+-.|-..+-.... ... ...
T Consensus 100 LDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~~~-~~~ 173 (398)
T COG1373 100 LDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----EPS-KLE 173 (398)
T ss_pred EecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----chh-HHH
Confidence 99999999999988888766666 888888776543321 335678999999998876543100 000 111
Q ss_pred HHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHHHHccCCCchHHHHHHHcH-hcCChhHHHHHhhhhcc-cCCcCH
Q 037173 365 EVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMRKLEIIPHVDILKVLKISY-DSLDDSQKNVFLDIACL-LEGEHR 442 (617)
Q Consensus 365 ~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy-~~L~~~~k~~fl~la~f-p~~~~~ 442 (617)
..-+-.-..||.|-++..-...-. .......+..+ ++....- ... ..+++.+.+++-. +..++.
T Consensus 174 -~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~~----------Di~~~~~~~~~-~~~k~i~~~l~~~~g~~~s~ 239 (398)
T COG1373 174 -LLFEKYLETGGFPESVKADLSEKK--LKEYLDTILKR----------DIIERGKIENA-DLMKRILRFLASNIGSPISY 239 (398)
T ss_pred -HHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHHH----------HHHHHcCcccH-HHHHHHHHHHHhhcCCccCH
Confidence 122233457999988754322111 01111111110 1111111 111 3445555555554 444899
Q ss_pred HHHHHhHh-hcCCchHHhHHHHhhCCCceEe
Q 037173 443 DEVTSFFD-ASGFQAKIELSVLEDKSLITCL 472 (617)
Q Consensus 443 ~~L~~~w~-~~g~~~~~~l~~L~~~sLi~~~ 472 (617)
..+.+.+. -+.-....+++-|.+.-++...
T Consensus 240 ~~la~~l~~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 240 SSLARELKGISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhheEEe
Confidence 99999884 4433456778888887777743
No 109
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=8.7e-06 Score=61.28 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCc
Q 037173 548 PKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKL 605 (617)
Q Consensus 548 ~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i 605 (617)
++|++|++.++.+. .+|... .+.+|++|+++++.++.+ ...+.+|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~---~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT---EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES---EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC---ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888899888666 788655 788999999998888888 45888999999988875
No 110
>PRK08116 hypothetical protein; Validated
Probab=97.99 E-value=7.4e-05 Score=74.44 Aligned_cols=102 Identities=23% Similarity=0.312 Sum_probs=61.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
..+.|+|.+|+|||.||..+++.+..+...++++. ..+++..+....... .......+.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-~~~~~~~~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-GKEDENEIIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-ccccHHHHHHHhcCCC-EE
Confidence 45889999999999999999999766544445554 233344443333221 1123445566666555 89
Q ss_pred EEeCCC--CHHh--HHHHHcccCC-CCCCcEEEEEcCCc
Q 037173 290 VFDDVN--HPGQ--IESLIGCLDE-LASGSRVIITTRDK 323 (617)
Q Consensus 290 VLDdv~--~~~~--~~~l~~~l~~-~~~gs~IlvTTR~~ 323 (617)
||||+. .... .+.+...+.. ...+..+|+||...
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999993 2222 2333333321 13566799998743
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00032 Score=71.93 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=92.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc---------------------cCceEEEEechhhhccCCHHHHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC---------------------FEGSYFALDVREAEETGRIKDLQKELLSKLL 267 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 267 (617)
...+.++|+.|+|||++|..++..+--. .+...++... ..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~-~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE-EA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-CC------------------
Confidence 5678899999999999999999874211 1111222100 00
Q ss_pred cCCCCCCHHHHHHH---H-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcc-ccccc-CcceEE
Q 037173 268 NDGNARNVESQLNR---L-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQ-VLENC-WVNQIY 335 (617)
Q Consensus 268 ~~~~~~~~~~l~~~---L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~ 335 (617)
.....++.+++. + .+++-++|+|+++ +.+..+.++..+..-..++.+|+||.+.. +.+.. .....+
T Consensus 83 --~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 83 --DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred --CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 011123333322 2 2344456789997 55677778777766556777777777653 33221 224678
Q ss_pred EeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 336 RMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 336 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.+.+++.+++.+.+.... .. ...+.+..++..++|.|+....+
T Consensus 161 ~~~~~~~~~~~~~L~~~~--~~----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL--PE----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhc--cc----CChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999887653 11 11334567789999999855444
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00018 Score=79.65 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=107.3
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-cc-Cc-eEEEE-echhhhc--cCCHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-CF-EG-SYFAL-DVREAEE--TGRIK 256 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f-~~-~~~~~-~~~~~~~--~~~~~ 256 (617)
..-..++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-. +. .. .+-.+ .+..... ..++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 34567999999999999988633 22456789999999999999999987421 11 00 00000 0000000 00000
Q ss_pred HHHHHHHHHHhcCCCCC---CHHHHHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcC-Cccc
Q 037173 257 DLQKELLSKLLNDGNAR---NVESQLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTR-DKQV 325 (617)
Q Consensus 257 ~l~~~l~~~l~~~~~~~---~~~~l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR-~~~v 325 (617)
. +.. .... ++..+.+.+ .++.-++|+|+++ +....+.|+..+......+.+|++|. ...+
T Consensus 92 e--------id~-~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 92 E--------IDG-ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred e--------eec-cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 0 000 0001 122222222 2344589999996 44567777777765455666665554 3333
Q ss_pred cccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHH
Q 037173 326 LENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVL 384 (617)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 384 (617)
.... .....+++.+++.++....+...+-... .....+.+..|++.++|..- |+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3221 2235788999999999888876553221 12235667888899988764 44443
No 113
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.92 E-value=0.00015 Score=76.21 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=98.5
Q ss_pred ccCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
..-.++.|.+...++|.+.+.. +-...+-+.++|++|.|||+||+.+++.....| +.+. .
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~----- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-G----- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h-----
Confidence 3445688999999888876631 112357789999999999999999998754332 1111 0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH-------------H---hHHHHHcccCC--CCC
Q 037173 252 TGRIKDLQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP-------------G---QIESLIGCLDE--LAS 312 (617)
Q Consensus 252 ~~~~~~l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~--~~~ 312 (617)
..+. ....+.. ...+..+.. .....+.+|+||+++.. . .+..++..+.. ...
T Consensus 213 ----s~l~----~k~~ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 ----SEFV----QKYLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred ----HHHH----HHhcchh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0111 1110000 001122222 22467899999998532 0 12233333322 124
Q ss_pred CcEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 313 GSRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 313 gs~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
+..||+||........ ......++++..+.++..++|..+........ .-...++++.+.|.--
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~sg 352 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKISA 352 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCCH
Confidence 5678888876543321 12456789999999988888886653222111 1124566667766643
No 114
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.92 E-value=0.00014 Score=64.05 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEeccCCChhhHHHHHHHHHhh
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999864
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.92 E-value=4.7e-05 Score=80.62 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=96.4
Q ss_pred CCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 185 NKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
-.++.|.+..++++.+.+.. +-...+-+.|+|++|+|||++|+.+++.....| +.+.. ..
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~~-se----- 252 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF---LRVVG-SE----- 252 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEec-ch-----
Confidence 35678999999999887741 112345788999999999999999999865443 11110 00
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH-------------H---hHHHHHcccCC--CCCCc
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP-------------G---QIESLIGCLDE--LASGS 314 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~--~~~gs 314 (617)
+... ..+... ..+..+.+ ...+.+.+|+||+++.. + .+..++..+.. ...+.
T Consensus 253 ----L~~k----~~Ge~~-~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 ----LIQK----YLGDGP-KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred ----hhhh----hcchHH-HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 0000 000000 00111111 22457889999997421 0 12222222221 13456
Q ss_pred EEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 315 RVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 315 ~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
.||+||........ ......++++..+.++..++|..+...-..... -....++..+.|.-
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 78888875543322 124567899999999999999877633221111 12345565665554
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.91 E-value=8.4e-05 Score=84.10 Aligned_cols=152 Identities=19% Similarity=0.232 Sum_probs=85.7
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc------cCceEEEEechhhhccCCHHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC------FEGSYFALDVREAEETGRIKDL 258 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~l 258 (617)
-++++||+.++.++.+.|.... ..-+.|+|++|+|||++|+.+++++... .+..+|..+. ..+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~~l 253 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------GSL 253 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------HHH
Confidence 3569999999999999887432 2345689999999999999999875332 1233343211 111
Q ss_pred HHHHHHHHhcCCC-CCCHHHHHHHH-cCCCeEEEEeCCCCH----------HhHHH-HHcccCCCCCCcEEEEEcCCccc
Q 037173 259 QKELLSKLLNDGN-ARNVESQLNRL-ARKKVLLVFDDVNHP----------GQIES-LIGCLDELASGSRVIITTRDKQV 325 (617)
Q Consensus 259 ~~~l~~~l~~~~~-~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~~-l~~~l~~~~~gs~IlvTTR~~~v 325 (617)
+......+. ...+..+.+.+ +.++.+|++|+++.. .+... +.+.+. ...-++|-+|..+..
T Consensus 254 ----laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_pred ----hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHH
Confidence 000000000 00122333333 346789999999532 12222 222222 223445555544332
Q ss_pred ccc-------cCcceEEEeccCChhHHHHHHHHhh
Q 037173 326 LEN-------CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 326 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
... ....+.+.+++++.++..+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 110 0123579999999999999998643
No 117
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.88 E-value=3.2e-05 Score=79.27 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=57.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhh-ccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCH----------HH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISR-CFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNV----------ES 277 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~----------~~ 277 (617)
-+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++ ....+.++++.+...+.....+... -.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE--R~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC--chhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998654 6999999985544 2236777777776433222211111 11
Q ss_pred HHHH--HcCCCeEEEEeCCCC
Q 037173 278 QLNR--LARKKVLLVFDDVNH 296 (617)
Q Consensus 278 l~~~--L~~k~~LlVLDdv~~ 296 (617)
..++ -.+++++|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 1112 267999999999953
No 118
>CHL00176 ftsH cell division protein; Validated
Probab=97.87 E-value=0.00039 Score=77.37 Aligned_cols=172 Identities=15% Similarity=0.113 Sum_probs=96.5
Q ss_pred CCCcccchhhHHHHHHHhh---hc-------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 185 NKGLVGVAWRIKEIESLLC---IR-------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
-++++|.++..+++.+.+. .. ....+-+.++|++|+|||+||+.++...... |+. ++
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is---- 248 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS---- 248 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----
Confidence 4568888887777766543 11 1124568999999999999999999864322 222 10
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCC--CCCCcE
Q 037173 255 IKDLQKELLSKLLNDGNARNVES-QLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDE--LASGSR 315 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~-l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~~~gs~ 315 (617)
..++.... .+.. ...+.. +.......+++|+|||++.. ..+..++..+.. ...+..
T Consensus 249 ~s~f~~~~----~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 249 GSEFVEMF----VGVG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHHHHHh----hhhh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 00010000 0000 001122 22233567899999999632 123333333322 134556
Q ss_pred EEEEcCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC
Q 037173 316 VIITTRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV 377 (617)
Q Consensus 316 IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 377 (617)
||.||....... .......+.++..+.++-.+++..++..... ........+++.+.|.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGF 387 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCC
Confidence 677776543322 1124467899999999999999887743211 1233456788888873
No 119
>PRK08181 transposase; Validated
Probab=97.86 E-value=5.3e-05 Score=75.14 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=57.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
.-+.|+|++|+|||.||..+++........+.|+. ..++...+.... .+.......+.+. +.=||
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~----~~~~~~~~l~~l~-~~dLL 171 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVAR----RELQLESAIAKLD-KFDLL 171 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHH----hCCcHHHHHHHHh-cCCEE
Confidence 45899999999999999999998765544456654 233444443221 1123344444443 34499
Q ss_pred EEeCCC----CHHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 290 VFDDVN----HPGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 290 VLDdv~----~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
||||+. +......+...+...-.+..+||||..+
T Consensus 172 IIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999994 2222233333333211224688888854
No 120
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.81 E-value=4.9e-05 Score=74.52 Aligned_cols=86 Identities=20% Similarity=0.192 Sum_probs=56.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhh-ccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC-CC---H-------H
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISR-CFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNA-RN---V-------E 276 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~---~-------~ 276 (617)
...++|.|++|+|||||++.+++.... +|+..+|+..+.+ ...++.++++.+...+.....+ .. . +
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998543 6888889874322 1357888888873333222111 11 1 1
Q ss_pred HHHHH-HcCCCeEEEEeCCCC
Q 037173 277 SQLNR-LARKKVLLVFDDVNH 296 (617)
Q Consensus 277 ~l~~~-L~~k~~LlVLDdv~~ 296 (617)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 11111 257899999999953
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.81 E-value=0.00043 Score=69.75 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=71.6
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhcc--CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCF--EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
-+.++|++|+|||++|+.++..+.... ....|+. ++. .++ ...+.+... .....+.+. ...-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~~l----~~~~~g~~~-~~~~~~~~~--a~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----DDL----VGQYIGHTA-PKTKEILKR--AMGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----HHH----hHhhcccch-HHHHHHHHH--ccCcE
Confidence 588999999999999998887654321 1122333 111 111 111111110 111222222 23468
Q ss_pred EEEeCCCC-----------HHhHHHHHcccCCCCCCcEEEEEcCCccccccc--------CcceEEEeccCChhHHHHHH
Q 037173 289 LVFDDVNH-----------PGQIESLIGCLDELASGSRVIITTRDKQVLENC--------WVNQIYRMKELVDVDAHKLF 349 (617)
Q Consensus 289 lVLDdv~~-----------~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf 349 (617)
|+||+++. .+..+.+...+.....+.+||+++.....-... .....+++++++.+|..+++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 99999962 223455555555444566777776543221110 12357899999999999998
Q ss_pred HHhh
Q 037173 350 CQCA 353 (617)
Q Consensus 350 ~~~~ 353 (617)
....
T Consensus 205 ~~~l 208 (284)
T TIGR02880 205 GLML 208 (284)
T ss_pred HHHH
Confidence 8876
No 122
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.80 E-value=2.5e-05 Score=70.84 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=55.5
Q ss_pred cEEEcCccccCC-CchHHHHHHHHhhC-CCceeecC-CcCC--CCcchHHHHHHHHhcceEEEEecCCc
Q 037173 17 DVFLSFRGEDTR-DNFTSHLHYVLSLK-GIKTFVDD-QLIR--GDNISRSLLDTIEASSISIIIFSERY 80 (617)
Q Consensus 17 dvFisy~~~d~~-~~~~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~~i~~s~~~i~v~s~~y 80 (617)
-|||||+++... ..+|..|++.|+.. |+.|.+|. +... +..+...+.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 489999986533 46799999999999 99999998 7744 77889999999999999999999655
No 123
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.79 E-value=0.00024 Score=69.36 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=63.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARN 274 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 274 (617)
+..+.++...-..+...+.++|.+|+|||+||..+++.+...-..++++. ..++...+-.... .....
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~--~~~~~ 152 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFS--NSETS 152 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHh--hcccc
Confidence 34444444322223457889999999999999999998766544555554 2333333333221 11123
Q ss_pred HHHHHHHHcCCCeEEEEeCCCC--HHhHH--HHHcccCC-CCCCcEEEEEcCC
Q 037173 275 VESQLNRLARKKVLLVFDDVNH--PGQIE--SLIGCLDE-LASGSRVIITTRD 322 (617)
Q Consensus 275 ~~~l~~~L~~k~~LlVLDdv~~--~~~~~--~l~~~l~~-~~~gs~IlvTTR~ 322 (617)
...+.+.+. +.=+|||||+.. ...|+ .+...+.. ....-.+||||..
T Consensus 153 ~~~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 153 EEQLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 345556666 344888899942 22232 22222221 1234457777764
No 124
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00059 Score=70.89 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=83.1
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV 287 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~ 287 (617)
....+.|+|..|.|||.|++++.+......+....+. + ........+...+.. ...+..++.. .-=
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~----~~~~~Fk~~y--~~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRD----NEMEKFKEKY--SLD 177 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHh----hhHHHHHHhh--ccC
Confidence 4678999999999999999999999877776444433 1 122222333333222 1234555555 344
Q ss_pred EEEEeCCCC----HHhHHHHHcccCCC-CCCcEEEEEcCCcc---------cccccCcceEEEeccCChhHHHHHHHHhh
Q 037173 288 LLVFDDVNH----PGQIESLIGCLDEL-ASGSRVIITTRDKQ---------VLENCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 288 LlVLDdv~~----~~~~~~l~~~l~~~-~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
++++||++- ...-+.+...++.. ..|..||+|++... +...+...-++++.+++.+....++.+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 889999952 11123333333221 23448999986532 22233445789999999999999998866
Q ss_pred h
Q 037173 354 F 354 (617)
Q Consensus 354 ~ 354 (617)
.
T Consensus 258 ~ 258 (408)
T COG0593 258 E 258 (408)
T ss_pred H
Confidence 3
No 125
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.77 E-value=0.0008 Score=66.74 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=111.8
Q ss_pred CCcccch---hhHHHHHHHhhh-cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC------ceEEEEechhhhccCCH
Q 037173 186 KGLVGVA---WRIKEIESLLCI-RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE------GSYFALDVREAEETGRI 255 (617)
Q Consensus 186 ~~~vGR~---~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 255 (617)
+.+||-. .-++.|.+++.. .....+-+.|+|.+|.|||++++.+.......++ .++.+. ....++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 4456643 345566666653 3344678999999999999999999987433332 133333 5667888
Q ss_pred HHHHHHHHHHHhcCCCCC-CH----HHHHHHHcC-CCeEEEEeCCCCH-----HhHHHHHcccCCCC---CCcEEEEEcC
Q 037173 256 KDLQKELLSKLLNDGNAR-NV----ESQLNRLAR-KKVLLVFDDVNHP-----GQIESLIGCLDELA---SGSRVIITTR 321 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~~~-~~----~~l~~~L~~-k~~LlVLDdv~~~-----~~~~~l~~~l~~~~---~gs~IlvTTR 321 (617)
..+...|+..++..-... .. ....+.++. +.=+||+|++.+. .+-..++..+...+ .=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999999998763222 33 223344543 4458999999642 22233333332222 2334555555
Q ss_pred Cccccccc-----CcceEEEeccCChhHHH-HHHHHhhh--c-CCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 322 DKQVLENC-----WVNQIYRMKELVDVDAH-KLFCQCAF--R-GGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 322 ~~~v~~~~-----~~~~~~~l~~L~~~ea~-~Lf~~~~~--~-~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
+..-+-.. +-...+.++....++-. .|+..... . .....-...+++..|...++|+.--+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 43211111 11245677777655544 34332211 1 1122234578899999999999755443
No 126
>PRK12377 putative replication protein; Provisional
Probab=97.76 E-value=0.00024 Score=69.53 Aligned_cols=100 Identities=24% Similarity=0.191 Sum_probs=57.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
...+.|+|.+|+|||+||..+++.+......++++. ..++...+-..... ......+.+.+ .+.=|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~----------~~~l~~~l~~~~~~---~~~~~~~l~~l-~~~dL 166 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----------VPDVMSRLHESYDN---GQSGEKFLQEL-CKVDL 166 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE----------HHHHHHHHHHHHhc---cchHHHHHHHh-cCCCE
Confidence 357899999999999999999999776655566665 22333333332211 11123333444 34558
Q ss_pred EEEeCCC----CHHhHHHHHcccCC-CCCCcEEEEEcCC
Q 037173 289 LVFDDVN----HPGQIESLIGCLDE-LASGSRVIITTRD 322 (617)
Q Consensus 289 lVLDdv~----~~~~~~~l~~~l~~-~~~gs~IlvTTR~ 322 (617)
|||||+. +....+.+...+.. ....-.+||||..
T Consensus 167 LiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 167 LVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999993 22222333333321 1233457888764
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.0008 Score=67.77 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=72.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc-c-CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC-F-EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV 287 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~ 287 (617)
..+.++|++|+|||++|+.+++..... + ...-|+. ++ ..++. ....+... .....+.+. ...-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~l~----~~~~g~~~-~~~~~~l~~--a~gg 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDDLV----GQYIGHTA-PKTKEVLKK--AMGG 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHHHH----HHHhccch-HHHHHHHHH--ccCC
Confidence 357899999999999999998874321 1 1112332 11 11121 11111110 011112221 2335
Q ss_pred EEEEeCCCC-----------HHhHHHHHcccCCCCCCcEEEEEcCCcccccc--------cCcceEEEeccCChhHHHHH
Q 037173 288 LLVFDDVNH-----------PGQIESLIGCLDELASGSRVIITTRDKQVLEN--------CWVNQIYRMKELVDVDAHKL 348 (617)
Q Consensus 288 LlVLDdv~~-----------~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~L 348 (617)
+|+||+++. .+..+.+...+.....+.+||+++....+... -.....+.+++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 999999963 23445555555544456677777754332110 01345789999999999999
Q ss_pred HHHhhh
Q 037173 349 FCQCAF 354 (617)
Q Consensus 349 f~~~~~ 354 (617)
+...+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 888763
No 128
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.73 E-value=0.00047 Score=75.37 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=94.4
Q ss_pred cCCCcccchhhHHHHHHHhh---h-------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 184 ENKGLVGVAWRIKEIESLLC---I-------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
.-++++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++......| +. ++
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~--- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS--- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc---
Confidence 34568888877776665443 1 122245688999999999999999998643221 11 10
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CCCc
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--ASGS 314 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~gs 314 (617)
..++... ..+. ....+..+.+ .....+.+|+||+++.. ..+..++..+... ..+.
T Consensus 121 -~~~~~~~----~~g~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 121 -GSDFVEM----FVGV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred -HHHHHHH----Hhcc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 0111110 0000 0001122222 22456789999999532 1122333333211 2345
Q ss_pred EEEEEcCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 315 RVIITTRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 315 ~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
.||.||....... .......+.++..+.++-.++|..+........ ......+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 5666665543221 123456789999999888898887763322111 123457888888743
No 129
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.72 E-value=6.9e-05 Score=69.83 Aligned_cols=72 Identities=33% Similarity=0.356 Sum_probs=44.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
..-+.|+|.+|+|||.||..+++....+-..+.|+. ..+++..+ ...........+.+.+.+- =|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~----------~~~L~~~l----~~~~~~~~~~~~~~~l~~~-dl 111 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT----------ASDLLDEL----KQSRSDGSYEELLKRLKRV-DL 111 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----------HHHHHHHH----HCCHCCTTHCHHHHHHHTS-SC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee----------cCceeccc----cccccccchhhhcCccccc-cE
Confidence 346899999999999999999998665444466665 23333333 2222222344455566544 47
Q ss_pred EEEeCCC
Q 037173 289 LVFDDVN 295 (617)
Q Consensus 289 lVLDdv~ 295 (617)
|||||+-
T Consensus 112 LilDDlG 118 (178)
T PF01695_consen 112 LILDDLG 118 (178)
T ss_dssp EEEETCT
T ss_pred ecccccc
Confidence 7799994
No 130
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00067 Score=67.82 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=103.0
Q ss_pred CCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 186 KGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
..+=|-++++++|.+.... +=+.++=|.++|++|.|||-||++++++.... |+..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc-------
Confidence 3445777778877776541 11346778999999999999999999985433 343211
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------H---hHHHHHcccCCC--CCCcE
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------G---QIESLIGCLDEL--ASGSR 315 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~~--~~gs~ 315 (617)
. ++.+...+++.. -+..+.+.- ...+.+|++|.++.. + .+-+|+..+..+ ....+
T Consensus 219 -S----ElVqKYiGEGaR-lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 219 -S----ELVQKYIGEGAR-LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred -H----HHHHHHhccchH-HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 1 222222222111 112222222 457899999998531 1 123344444433 34668
Q ss_pred EEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHccCCch----HHHHHh
Q 037173 316 VIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGH-LDASYTEVTRKAIKYAHGVPL----ALQVLG 385 (617)
Q Consensus 316 IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~G~PL----ai~~~a 385 (617)
||..|.-.+++.. -..+..++++.-+.+.-.++|.-++-.-.- ..-. .+.+++.|.|.-= |+.+=|
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHH
Confidence 8888866554432 134567888866666667788777643221 1112 4566677776653 344444
Q ss_pred hhh
Q 037173 386 RHL 388 (617)
Q Consensus 386 ~~L 388 (617)
+++
T Consensus 369 Gm~ 371 (406)
T COG1222 369 GMF 371 (406)
T ss_pred hHH
Confidence 544
No 131
>PRK09183 transposase/IS protein; Provisional
Probab=97.70 E-value=0.00013 Score=72.50 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=53.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
..+.|+|++|+|||+||..+++.....-..+.++. ..++...+...... ..+.........+.-++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~----------~~~l~~~l~~a~~~----~~~~~~~~~~~~~~dlL 168 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT----------AADLLLQLSTAQRQ----GRYKTTLQRGVMAPRLL 168 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe----------HHHHHHHHHHHHHC----CcHHHHHHHHhcCCCEE
Confidence 46789999999999999999887544333344443 12222222211111 11222222223455699
Q ss_pred EEeCCCC----HHhHHHHHcccCCC-CCCcEEEEEcCCc
Q 037173 290 VFDDVNH----PGQIESLIGCLDEL-ASGSRVIITTRDK 323 (617)
Q Consensus 290 VLDdv~~----~~~~~~l~~~l~~~-~~gs~IlvTTR~~ 323 (617)
|+||+.. .+..+.+...+... ..++ +|+||...
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 9999952 23322333333211 2344 88888753
No 132
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.69 E-value=0.001 Score=62.88 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=65.9
Q ss_pred ccCCCcccchhhHHHHHHHhh--hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLC--IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
..-..++|.+...+.|.+--. ...-...-|.+||--|.|||+|++++.+.+......-+=|. -.+-.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~----k~dl~------- 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD----KEDLA------- 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc----HHHHh-------
Confidence 344568999998888876332 12223456889999999999999999999877665433222 11111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH--cCCCeEEEEeCCC---CHHhHHHHHcccC
Q 037173 261 ELLSKLLNDGNARNVESQLNRL--ARKKVLLVFDDVN---HPGQIESLIGCLD 308 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~---~~~~~~~l~~~l~ 308 (617)
++..+.+.| +..|++|..||+. ..+....+...+.
T Consensus 126 -------------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 126 -------------TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred -------------hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 123344444 4678999999992 4455666665554
No 133
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0024 Score=64.94 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=97.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechh---hhccCCHHHHHHHHHHHHhcCC-
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVRE---AEETGRIKDLQKELLSKLLNDG- 270 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~l~~~l~~~l~~~~- 270 (617)
.+.+...+.. ..-...+.++|+.|+||+++|..+++.+--.-....-.+.... ....+++.-+. ..-...+
T Consensus 13 ~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~----~~p~~~~~ 87 (319)
T PRK08769 13 YDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS----FIPNRTGD 87 (319)
T ss_pred HHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe----cCCCcccc
Confidence 3445555532 2224578899999999999999999873211000000000000 00000000000 0000000
Q ss_pred ---CCCCHHHHHHH---H-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-cccccc-CcceEE
Q 037173 271 ---NARNVESQLNR---L-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QVLENC-WVNQIY 335 (617)
Q Consensus 271 ---~~~~~~~l~~~---L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~-~~~~~~ 335 (617)
..+.++.+++. + .+++-++|+|+++ +...-+.++..+..-.+++.+|++|.+. .+.+.. .....+
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i 167 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRL 167 (319)
T ss_pred cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEe
Confidence 11223444332 2 2455699999997 4556677777776656777777776653 333322 234678
Q ss_pred EeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 336 RMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 336 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
.+.+++.+++.+.+.... .+ ...+..++..++|.|+....+.
T Consensus 168 ~~~~~~~~~~~~~L~~~~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQG-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eCCCcCHHHHHHHHHHcC-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999998886532 11 2336678999999998665443
No 134
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00028 Score=70.95 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=101.2
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCC-eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAG-VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
..+.+.+|+.++..+..++...+.. +..|.|+|.+|.|||.+.+.+.+... ...+|++ .-..+....++..|
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHH
Confidence 3567899999999999999755543 44568999999999999999998752 2468888 55667788888888
Q ss_pred HHHHhcCCCCC---CH---------HHHHH--HH--cCCCeEEEEeCCCCHHhH-----HHHHcccCCCCCCcEEEEEcC
Q 037173 263 LSKLLNDGNAR---NV---------ESQLN--RL--ARKKVLLVFDDVNHPGQI-----ESLIGCLDELASGSRVIITTR 321 (617)
Q Consensus 263 ~~~l~~~~~~~---~~---------~~l~~--~L--~~k~~LlVLDdv~~~~~~-----~~l~~~l~~~~~gs~IlvTTR 321 (617)
+.+....+.+. .. ..+.+ .. +++.++|||||++...+. ..+...-.-.......|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 88885221111 11 11111 11 246899999999754332 222211111112233344433
Q ss_pred Ccc---cccccCc--ceEEEeccCChhHHHHHHHHhh
Q 037173 322 DKQ---VLENCWV--NQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 322 ~~~---v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
... ....++. ..++..+.-+.+|..+++.+..
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 221 1111232 2456778889999999886654
No 135
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.64 E-value=0.00015 Score=74.79 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=58.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC----H---HHH--
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARN----V---ESQ-- 278 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~----~---~~l-- 278 (617)
-+.++|+|++|+|||||++.+++.+... |+..+|+..+++ ....+.++++.+...+.....+.. . ..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4578999999999999999999986555 888889884422 235788888888554433321111 1 111
Q ss_pred -HHH--HcCCCeEEEEeCCCC
Q 037173 279 -LNR--LARKKVLLVFDDVNH 296 (617)
Q Consensus 279 -~~~--L~~k~~LlVLDdv~~ 296 (617)
.++ -.+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 111 258999999999954
No 136
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.0012 Score=68.40 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=113.0
Q ss_pred ccCCCcccchhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCc--eEEEEechhhhccCCHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG--SYFALDVREAEETGRIKDL 258 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 258 (617)
..+..++||+.++..+.+++.. .....+.+=|.|-+|.|||.+...++.+....... .+++... .-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~----sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT----SLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec----cccchHHH
Confidence 4567899999999999999963 33445678899999999999999999986554433 3555522 22344555
Q ss_pred HHHHHHHHh----cCCCCC-CHHHHHHHHcC--CCeEEEEeCCCCHH--hHHHHHcccCC-CCCCcEEEEEcCCc-----
Q 037173 259 QKELLSKLL----NDGNAR-NVESQLNRLAR--KKVLLVFDDVNHPG--QIESLIGCLDE-LASGSRVIITTRDK----- 323 (617)
Q Consensus 259 ~~~l~~~l~----~~~~~~-~~~~l~~~L~~--k~~LlVLDdv~~~~--~~~~l~~~l~~-~~~gs~IlvTTR~~----- 323 (617)
+..+...+. ..+... ....+.....+ ..+|+|+|.++... .-..+...+.| .-+++++|+.---.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 666665552 222221 12444444433 35899999987432 11111111211 12455554432110
Q ss_pred -cccccc-----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 324 -QVLENC-----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 324 -~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
..+... -....+..+|.+.++..++|..+.-... ........++-+++++.|.-=-+..+-.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLd 370 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALD 370 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHH
Confidence 111111 1346788899999999999998873222 1112223444455555554443333333
No 137
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.00049 Score=76.07 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=42.6
Q ss_pred cccCCCcccchhhHHHHHHHhhhcC---CCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRS---AGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
|.....++|.+..++++..++.... ...+++.|+|++|+||||+++.++...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999986422 234679999999999999999999864
No 138
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.62 E-value=0.001 Score=62.38 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=40.7
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..-.++||-++.++.+.-... +++.+-+.|.||+|+||||-+..+++.+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 345679999999998877664 4567788999999999999999999884
No 139
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0019 Score=66.59 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=87.7
Q ss_pred Cccc-chhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hc--------------------cCceEEEE
Q 037173 187 GLVG-VAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RC--------------------FEGSYFAL 244 (617)
Q Consensus 187 ~~vG-R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~--------------------f~~~~~~~ 244 (617)
.++| -+..++.+.+.+..+ .-.....++|+.|+|||++|..+++.+- .. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 666677777777522 2356778999999999999999998742 11 11111111
Q ss_pred echhhhccCCHHHHHHHHHHHHhcCCCCCCHHHH---HHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCc
Q 037173 245 DVREAEETGRIKDLQKELLSKLLNDGNARNVESQ---LNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGS 314 (617)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l---~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs 314 (617)
. .+....++.+ .+.+ .+.+=++|+|+++ +.+..+.++..+..-..++
T Consensus 85 ~-----------------------~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~ 141 (329)
T PRK08058 85 P-----------------------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGT 141 (329)
T ss_pred c-----------------------ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCc
Confidence 0 0011122222 2222 2345589999996 4456677777777656777
Q ss_pred EEEEEcCCcc-ccccc-CcceEEEeccCChhHHHHHHHHh
Q 037173 315 RVIITTRDKQ-VLENC-WVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 315 ~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
.+|++|.+.. +.+.. .....+++.+++.++..+.+...
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777776543 32221 23478999999999998888653
No 140
>PRK06526 transposase; Provisional
Probab=97.62 E-value=0.00013 Score=72.00 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=53.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
.-+.|+|++|+|||+||..+.+.....-..+.|+. ..++...+..... ..........+. +.-+|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t----------~~~l~~~l~~~~~----~~~~~~~l~~l~-~~dlL 163 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT----------AAQWVARLAAAHH----AGRLQAELVKLG-RYPLL 163 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh----------HHHHHHHHHHHHh----cCcHHHHHHHhc-cCCEE
Confidence 46899999999999999999988654433334432 2233333322211 112222223332 34589
Q ss_pred EEeCCCC----HHhHHHHHcccCC-CCCCcEEEEEcCCc
Q 037173 290 VFDDVNH----PGQIESLIGCLDE-LASGSRVIITTRDK 323 (617)
Q Consensus 290 VLDdv~~----~~~~~~l~~~l~~-~~~gs~IlvTTR~~ 323 (617)
|+||+.. ....+.+...+.. ...+ .+|+||..+
T Consensus 164 IIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 164 IVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred EEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 9999952 2222223332221 1234 488888754
No 141
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=5.9e-05 Score=52.32 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCccc---ccccCCeeEEecCCCCccccC
Q 037173 573 AELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 573 ~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp 609 (617)
++|++|+++++.|+.+ +++|.+|++|+|++++|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3678888888888888 778888888888888887665
No 142
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0038 Score=59.93 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=99.4
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCH----HHHHHH
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNV----ESQLNR 281 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~----~~l~~~ 281 (617)
.++.+++.++|.-|.|||.+++.......+ +.++-+.. .........+...+...+.. .+...+ +.+.+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~--d~~~~v~i---~~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE--DQVAVVVI---DKPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC--CceEEEEe---cCcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHH
Confidence 345569999999999999999955443322 12222220 12344555666666666655 222222 222222
Q ss_pred H-----cCCC-eEEEEeCCCC--HHhHHHHHccc---CCCCCCcEEEEEcCCccccccc---------CcceE-EEeccC
Q 037173 282 L-----ARKK-VLLVFDDVNH--PGQIESLIGCL---DELASGSRVIITTRDKQVLENC---------WVNQI-YRMKEL 340 (617)
Q Consensus 282 L-----~~k~-~LlVLDdv~~--~~~~~~l~~~l---~~~~~gs~IlvTTR~~~v~~~~---------~~~~~-~~l~~L 340 (617)
| ++++ ..++.|+..+ .+.++.+.-.. ......-+|+..-..+ +...+ ....+ |++.|+
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~-L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPK-LRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcc-cchhhchHHHHhhhheEEEEEecCCc
Confidence 2 5666 8999999953 33444433222 1112222344332221 11110 11223 899999
Q ss_pred ChhHHHHHHHHhhhcCCCCChh-HHHHHHHHHHHccCCchHHHHHhh
Q 037173 341 VDVDAHKLFCQCAFRGGHLDAS-YTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 341 ~~~ea~~Lf~~~~~~~~~~~~~-~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
+.++...++..+..+...+.+- ..+....|.....|.|.+|..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999998888876544333333 356678899999999999987764
No 143
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.57 E-value=0.00067 Score=68.82 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=67.1
Q ss_pred cchhhHHHHHHHhhhcC--CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHh
Q 037173 190 GVAWRIKEIESLLCIRS--AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLL 267 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 267 (617)
+|...+....+++..-. ...+-+.|+|..|+|||.||..+++.+...-..+.|+. + ..+...+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----F------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----H------HHHHHHHHHHHh
Confidence 34444444445554211 13457889999999999999999999766544566665 2 234444433332
Q ss_pred cCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHH--HHHccc-CCC-CCCcEEEEEcCC
Q 037173 268 NDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIE--SLIGCL-DEL-ASGSRVIITTRD 322 (617)
Q Consensus 268 ~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~--~l~~~l-~~~-~~gs~IlvTTR~ 322 (617)
. .......+.+. +.=||||||+- ....|. .++..+ ... ..+-.+|+||.-
T Consensus 205 ~----~~~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D----GSVKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c----CcHHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 12334444444 34489999994 233342 243332 211 245668888874
No 144
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.53 E-value=0.0017 Score=74.67 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 185 NKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
-..+.|.+...++|.+.+.. +-...+-+.++|++|+|||+||+.+++.....| +.+. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH------
Confidence 34577888888777776531 112345688999999999999999999754332 1111 11
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH--------------HhHHHHHcccCC--CCCCcEE
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP--------------GQIESLIGCLDE--LASGSRV 316 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~--~~~gs~I 316 (617)
+ ++....+.. ...+..+.+.. ...+.+|++|+++.. .....++..+.. ...+..|
T Consensus 522 ---~----l~~~~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 522 ---E----ILSKWVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ---H----HhhcccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 1 111111000 00122222222 456799999998532 122334433332 1234556
Q ss_pred EEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 317 IITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 317 lvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
|.||..+..... ...+..+.++..+.++-.++|..+.-+..... ......+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 667765543321 13457788999999999999876653222111 112456777777764
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.53 E-value=0.0013 Score=75.25 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCcccchhhHHHHHHHhhhc------C-CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIR------S-AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..++.+.+.+... . ....++.++|++|+|||+||+.++..... ..+.+. +.+.........
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~~~~~~ 528 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEKHTVSR 528 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-CchhhhcccHHH
Confidence 456889999999988877521 1 12446889999999999999999987632 223332 222222222211
Q ss_pred HHHHHHHHHhcCCCC--C-CHHHHHHHHcCCCe-EEEEeCCC--CHHhHHHHHcccCCC-----------CCCcEEEEEc
Q 037173 258 LQKELLSKLLNDGNA--R-NVESQLNRLARKKV-LLVFDDVN--HPGQIESLIGCLDEL-----------ASGSRVIITT 320 (617)
Q Consensus 258 l~~~l~~~l~~~~~~--~-~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~l~~~-----------~~gs~IlvTT 320 (617)
+ ++..... . ....+.+.++.+++ +++||+++ +++..+.++..+... -..+.||+||
T Consensus 529 l-------ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 529 L-------IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred H-------hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 1 1111100 1 12345555655555 99999997 455566666555322 1234577777
Q ss_pred CC
Q 037173 321 RD 322 (617)
Q Consensus 321 R~ 322 (617)
..
T Consensus 602 n~ 603 (731)
T TIGR02639 602 NA 603 (731)
T ss_pred Cc
Confidence 43
No 146
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.00067 Score=65.94 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=73.9
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH-h-hhccCceEEEEechhhhc-----cCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK-I-SRCFEGSYFALDVREAEE-----TGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~~~ 257 (617)
...+.+|......+..++.. ..++.++|++|.|||+||..++.+ + ...|...+.....-.... +.+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 35567888888888888853 248999999999999999999885 3 344554433321111111 112211
Q ss_pred HH----HHHHHHHhcCCCCCCHHHH------------HHHHcCCCe---EEEEeCCCC--HHhHHHHHcccCCCCCCcEE
Q 037173 258 LQ----KELLSKLLNDGNARNVESQ------------LNRLARKKV---LLVFDDVNH--PGQIESLIGCLDELASGSRV 316 (617)
Q Consensus 258 l~----~~l~~~l~~~~~~~~~~~l------------~~~L~~k~~---LlVLDdv~~--~~~~~~l~~~l~~~~~gs~I 316 (617)
-. .-+...+..--....+..+ ..++++..+ ++|+|++.+ ..+...++.. .+.+|++
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 11 1111111110000011111 124566554 999999964 4455555543 4789999
Q ss_pred EEEcCCc
Q 037173 317 IITTRDK 323 (617)
Q Consensus 317 lvTTR~~ 323 (617)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9986543
No 147
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.50 E-value=5.7e-05 Score=86.93 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=55.7
Q ss_pred CceEEEEecccCccccccCCCC--CCCCceEEEecCCC-Cccc---ccccCCeeEEecCCCCccccCCccccc
Q 037173 549 KLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYP-LKTL---NIHAENLVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 549 ~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~-i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~~L 615 (617)
.|++|-+.++.. ....++..+ .+++||+|+|++|. +..| |++|-|||+|||++|.|++||.++++|
T Consensus 546 ~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred ccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 699998887641 123666654 89999999999665 8889 999999999999999999999999887
No 148
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.50 E-value=0.00042 Score=61.27 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=26.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..+.|+|++|+||||+++.++..........+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999988655442344443
No 149
>PRK06921 hypothetical protein; Provisional
Probab=97.50 E-value=0.00029 Score=70.12 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (617)
...+.++|.+|+|||.||..+++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987665 44556665
No 150
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.49 E-value=1.3e-05 Score=84.55 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=67.1
Q ss_pred ccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCccc
Q 037173 538 HMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 538 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~ 613 (617)
.-.+.++..|.+|+-+||+.+... .+|+.+ .+.+||-|+|+++.|++| ++.-.||+||+|++++++.||..++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp---~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc 288 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP---IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVC 288 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC---cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHh
Confidence 334567789999999999998655 899999 999999999999999999 7789999999999999999999888
Q ss_pred cc
Q 037173 614 YI 615 (617)
Q Consensus 614 ~L 615 (617)
+|
T Consensus 289 KL 290 (1255)
T KOG0444|consen 289 KL 290 (1255)
T ss_pred hh
Confidence 76
No 151
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.49 E-value=0.0028 Score=68.39 Aligned_cols=173 Identities=17% Similarity=0.097 Sum_probs=92.8
Q ss_pred CCCcccchhhHHHHHHHh---hh-----cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc--CC
Q 037173 185 NKGLVGVAWRIKEIESLL---CI-----RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET--GR 254 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~--~~ 254 (617)
..++.|.+...+.+.+.. .. +-...+-|.++|++|.|||.+|+.+++..... ++..+....... ..
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHHhcccccCh
Confidence 345778776665555421 10 11235678999999999999999999875322 222211111000 00
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCCeEEEEeCCCCHH--------------hHHHHHcccCCCCCCcEEEEE
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNR-LARKKVLLVFDDVNHPG--------------QIESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~--------------~~~~l~~~l~~~~~gs~IlvT 319 (617)
.... +..+.+. -...+++|++|+++..- .+..+...+.....+.-||.|
T Consensus 303 se~~----------------l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 303 SESR----------------MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred HHHH----------------HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0111 1111111 13578999999996310 112222222222344556677
Q ss_pred cCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 320 TRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 320 TR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
|....... ....+..+.++..+.++-.++|..+..+..... ........+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 76554222 123457888999999999999988774322110 01122456667776664
No 152
>PRK04132 replication factor C small subunit; Provisional
Probab=97.49 E-value=0.0048 Score=70.32 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=92.9
Q ss_pred ec--cCCChhhHHHHHHHHHh-hhccCce-EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEE
Q 037173 215 WG--IGGIGKTTIAGAVFNKI-SRCFEGS-YFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLV 290 (617)
Q Consensus 215 ~G--~gGiGKTtLA~~~~~~~-~~~f~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlV 290 (617)
.| |.++||||+|..+++++ .+.+... +-++ .+...++..+. +++.......+. -..+.-++|
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~~---------~~~~~KVvI 635 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKPI---------GGASFKIIF 635 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCCc---------CCCCCEEEE
Confidence 36 78999999999999985 3333322 3333 23323343333 333322211000 012456999
Q ss_pred EeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcc-ccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHH
Q 037173 291 FDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQ-VLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEV 366 (617)
Q Consensus 291 LDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 366 (617)
+|+++. .+..+.+...+......+++|++|.+.. +.... .....+++.+++.++..+.+...+-... -...++.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i~i~~e~ 713 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LELTEEG 713 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 999974 4567777777765556777777666542 22221 2347899999999999888877653221 1123567
Q ss_pred HHHHHHHccCCchHHHH
Q 037173 367 TRKAIKYAHGVPLALQV 383 (617)
Q Consensus 367 ~~~i~~~~~G~PLai~~ 383 (617)
...|++.++|.+-.+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 88999999999864433
No 153
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.48 E-value=2.6e-05 Score=82.41 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=43.3
Q ss_pred hhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc---ccccCCeeEEecCCCC-----ccccCC
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAK-----LNNFGM 610 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~-----i~~Lp~ 610 (617)
..+...+++-||.|+++.+. .+|.++ .|.-|-||+|+++.+++| +-+|.+||||+|+++. +.+||.
T Consensus 120 ~~LE~AKn~iVLNLS~N~Ie---tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIE---TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hhhhhhcCcEEEEcccCccc---cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 34555666666666666555 666666 666777777777777777 6677777777777663 345664
No 154
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.47 E-value=0.043 Score=57.12 Aligned_cols=192 Identities=15% Similarity=0.114 Sum_probs=109.3
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHH-HHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHh--
Q 037173 191 VAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIA-GAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLL-- 267 (617)
Q Consensus 191 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-- 267 (617)
|.+.+++|..||.... -..|.|.||-|+||+.|+ .++.++ .+.+..+. +.......+-..+...++.+++
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~----r~~vL~ID-C~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD----RKNVLVID-CDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC----CCCEEEEE-ChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999997433 358999999999999998 555543 22233332 2222222222233333333321
Q ss_pred ---------------------cCCC--CCCH------------HHHHH-------------------HH---cCCCeEEE
Q 037173 268 ---------------------NDGN--ARNV------------ESQLN-------------------RL---ARKKVLLV 290 (617)
Q Consensus 268 ---------------------~~~~--~~~~------------~~l~~-------------------~L---~~k~~LlV 290 (617)
+... ..+. ..+++ +| ...+=++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1110 0111 11111 11 12355899
Q ss_pred EeCCCCH--------HhHHHHHcccCCCCCCcEEEEEcCCcccccc----c--CcceEEEeccCChhHHHHHHHHhhhcC
Q 037173 291 FDDVNHP--------GQIESLIGCLDELASGSRVIITTRDKQVLEN----C--WVNQIYRMKELVDVDAHKLFCQCAFRG 356 (617)
Q Consensus 291 LDdv~~~--------~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 356 (617)
+||.... +.+.++...+.. ++-.+||++|-+...... + ...+.+.|...+.+.|.++...+.-..
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 9999421 122222222221 455688888877644332 2 245678999999999999998877432
Q ss_pred CCC-------------C-----hhHHHHHHHHHHHccCCchHHHHHhhhhCC
Q 037173 357 GHL-------------D-----ASYTEVTRKAIKYAHGVPLALQVLGRHLCG 390 (617)
Q Consensus 357 ~~~-------------~-----~~~~~~~~~i~~~~~G~PLai~~~a~~L~~ 390 (617)
... . .......+..++.+||=-.-+..+++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 110 0 124445667788888888888888888864
No 155
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0047 Score=63.00 Aligned_cols=171 Identities=11% Similarity=0.074 Sum_probs=97.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-c-cCc-eEEEE-echhh--hccCCHHHHHHHHHHHHhc
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-C-FEG-SYFAL-DVREA--EETGRIKDLQKELLSKLLN 268 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f~~-~~~~~-~~~~~--~~~~~~~~l~~~l~~~l~~ 268 (617)
.+.+.+.+..+ .-...+.++|+.|+||+++|..++..+-- . ... .+=.+ ..+.+ ...+++..+ ..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP 81 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence 34455555422 22467789999999999999999987321 1 100 00000 00000 001111000 00
Q ss_pred -CCCCCCHHHHHH---HH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-cccccc-CcceEE
Q 037173 269 -DGNARNVESQLN---RL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QVLENC-WVNQIY 335 (617)
Q Consensus 269 -~~~~~~~~~l~~---~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~-~~~~~~ 335 (617)
.+....++.+++ .+ .+++=++|+|+++ +....+.++..+..-.+++.+|++|.+. .+.+.. .....+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 111223444443 32 2455688899997 4567778888877666777777777654 333332 234688
Q ss_pred EeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 336 RMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 336 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
.+.+++.+++.+.+..... . . ...+...+..++|.|+..
T Consensus 162 ~~~~~~~~~~~~~L~~~~~---~-~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSS---A-E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhc---c-C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999998877541 1 1 123567788999999743
No 156
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.001 Score=65.67 Aligned_cols=74 Identities=30% Similarity=0.301 Sum_probs=45.6
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV 287 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~ 287 (617)
...-+.++|.+|+|||.||.++.+++...--.+.|+. ..++..++....... .....+...+. +-=
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~~---~~~~~l~~~l~-~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDEG---RLEEKLLRELK-KVD 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcC---chHHHHHHHhh-cCC
Confidence 4456889999999999999999999774434455555 334444444433321 11122333232 233
Q ss_pred EEEEeCCC
Q 037173 288 LLVFDDVN 295 (617)
Q Consensus 288 LlVLDdv~ 295 (617)
||||||+-
T Consensus 170 lLIiDDlG 177 (254)
T COG1484 170 LLIIDDIG 177 (254)
T ss_pred EEEEeccc
Confidence 89999993
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0035 Score=67.21 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=112.0
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh-hhc---cCc--eEEEEechhhhccCCHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI-SRC---FEG--SYFALDVREAEETGRIKD 257 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~---f~~--~~~~~~~~~~~~~~~~~~ 257 (617)
.-.++||-+.-...|...+..+. -.......|+-|+||||+|+-++.-+ ..+ .+. .|-.+ ........+.-
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g~~~Dv 90 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEGSLIDV 90 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcCCcccc
Confidence 34567999999999999986432 24567789999999999999999862 111 110 01000 00000000000
Q ss_pred HHHHHHHHHhcCCCCC-CHHHHHHHHc-----CCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcc-ccc-
Q 037173 258 LQKELLSKLLNDGNAR-NVESQLNRLA-----RKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQ-VLE- 327 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~-~~~~l~~~L~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~- 327 (617)
+..+.++ .... ++..+.+... ++.=+.|+|.|. +...++.++..+..-......|+.|.+.. +..
T Consensus 91 iEiDaAS-----n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 91 IEIDAAS-----NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred hhhhhhh-----ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0000000 1111 2344444442 344488999996 66789999988876566777777666653 221
Q ss_pred ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 328 NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 328 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
.....+.|.++.++.++....+...+-. ..-...++...-|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~--E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDK--EGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHh--cCCccCHHHHHHHHHHcCCChh
Confidence 1223478999999999999888887732 2223445667778888887654
No 158
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0032 Score=65.92 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH-HHHHHhcCCCCCCHHHHHHHHcCC
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE-LLSKLLNDGNARNVESQLNRLARK 285 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~~~~~~l~~~L~~k 285 (617)
.+...+.+.|++|+|||+||..++.. ..|+.+-.++ ....-++.+-.+- .+. ....+.-+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~i~-----------k~F~DAYkS~ 598 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAHIK-----------KIFEDAYKSP 598 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHHHH-----------HHHHHhhcCc
Confidence 45677889999999999999999974 5677554443 1111111111000 000 1111223455
Q ss_pred CeEEEEeCCCCHHh------------HHHHHccc---CCCCCCcEEEEEcCCcccccccC----cceEEEeccCCh-hHH
Q 037173 286 KVLLVFDDVNHPGQ------------IESLIGCL---DELASGSRVIITTRDKQVLENCW----VNQIYRMKELVD-VDA 345 (617)
Q Consensus 286 ~~LlVLDdv~~~~~------------~~~l~~~l---~~~~~gs~IlvTTR~~~v~~~~~----~~~~~~l~~L~~-~ea 345 (617)
--.||+||++..-+ ++.+.-.+ +..+..--|+-||-...++..|+ ....+.++.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 56899999964322 23333223 32233344555666667777765 345789999987 677
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHHc
Q 037173 346 HKLFCQCAFRGGHLDASYTEVTRKAIKYA 374 (617)
Q Consensus 346 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~ 374 (617)
.+.++..- .-.+...+.++.+...+|
T Consensus 679 ~~vl~~~n---~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 679 LEVLEELN---IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHcc---CCCcchhHHHHHHHhccc
Confidence 77776643 122334445555555555
No 159
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0037 Score=64.28 Aligned_cols=171 Identities=12% Similarity=0.103 Sum_probs=97.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-c-c---CceEEEEechhh--hccCCHHHHHHHHHHHHh
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-C-F---EGSYFALDVREA--EETGRIKDLQKELLSKLL 267 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f---~~~~~~~~~~~~--~~~~~~~~l~~~l~~~l~ 267 (617)
-+++.+.+..+ .-...+.++|+.|+||+++|..++..+-- + - .++.. ...+.+ ...+++..+ .
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C-~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHC-RGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCCCCEEEE--------e
Confidence 44555555422 23567889999999999999999987421 1 0 00000 000000 000111000 0
Q ss_pred cCC--CCCCHHHHHH---HH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-cccccc-Ccce
Q 037173 268 NDG--NARNVESQLN---RL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QVLENC-WVNQ 333 (617)
Q Consensus 268 ~~~--~~~~~~~l~~---~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~-~~~~ 333 (617)
... ..+.++.+++ .+ .+++=++|+|+++ +.+..+.++..+..-.+++.+|++|.+. .+.+.. ....
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000 1123333333 22 2456689999997 4567778888877656777777776654 343321 2235
Q ss_pred EEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 334 IYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 334 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
.+.+.+++.+++.+.+.... ..+ .+.+..++..++|.|....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~----~~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV----TMS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc----CCC---HHHHHHHHHHcCCCHHHHH
Confidence 78999999999998886542 111 2346788999999997443
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.41 E-value=0.0014 Score=62.03 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=60.8
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH--hhhccCceEEEEechhhhc--cCCHHH-------HH
Q 037173 191 VAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK--ISRCFEGSYFALDVREAEE--TGRIKD-------LQ 259 (617)
Q Consensus 191 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~--~~~~~~-------l~ 259 (617)
+..+-....+.|. ...++.+.|++|.|||.||.+.+.+ ....|+..++....-.... .+..-+ ..
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344445555554 2358999999999999999999876 2456777777654322111 111111 11
Q ss_pred HHHHHHHhcCCCCCCHHHHHH----------HHcCC---CeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 260 KELLSKLLNDGNARNVESQLN----------RLARK---KVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~----------~L~~k---~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.-+...+..--....++.+.+ .++++ ..++|+|++. +..++..++... +.||++|++--.
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 111111111111122333332 23443 4699999995 456777776553 789999998654
No 161
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.41 E-value=0.0023 Score=73.51 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=93.0
Q ss_pred CCCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc-
Q 037173 185 NKGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET- 252 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 252 (617)
.+++.|.+..++++.+++... -...+.+.|+|++|+|||+||+.+++.....| +.+. .......
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 345889999999998876411 12346788999999999999999998764332 2222 1111000
Q ss_pred C-CHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH-------------HhHHHHHcccCCC-CCCcEE
Q 037173 253 G-RIKDLQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP-------------GQIESLIGCLDEL-ASGSRV 316 (617)
Q Consensus 253 ~-~~~~l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~-~~gs~I 316 (617)
. ..... +..+.+ ...+.+.+|+||+++.. .....+...+... ..+..+
T Consensus 253 ~g~~~~~----------------l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 253 YGESEER----------------LREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred ccHHHHH----------------HHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 0 00111 111111 22456789999998531 1123333333222 223334
Q ss_pred EE-EcCCcc-ccccc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 317 II-TTRDKQ-VLENC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 317 lv-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
++ ||.... +.... .....+.+...+.++-.+++....-..... .......+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCCH
Confidence 44 444332 11111 234567888888888888888654211111 11235667777877653
No 162
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0089 Score=60.81 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=96.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hc-------------------cCceEEEEechhhhccCC
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RC-------------------FEGSYFALDVREAEETGR 254 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~-------------------f~~~~~~~~~~~~~~~~~ 254 (617)
.+.+.+.+.. ..-...+.++|+.|+||+++|..++..+- .. .+...++...
T Consensus 12 ~~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-------- 82 (319)
T PRK06090 12 WQNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE-------- 82 (319)
T ss_pred HHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC--------
Confidence 3445555532 22356888999999999999999998631 11 1111111100
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHH---HH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLN---RL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK- 323 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~---~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~- 323 (617)
..+..+.++.+++ .+ .++.=++|+|+++ +....+.++..+..-.+++.+|++|.+.
T Consensus 83 -------------~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (319)
T PRK06090 83 -------------KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQK 149 (319)
T ss_pred -------------cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 0011123333333 22 2344589999997 4567777887777656777777666654
Q ss_pred cccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 324 QVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 324 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.+.+.. .....+.+.+++.+++.+.+.... .. ....++..++|.|+....+
T Consensus 150 ~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 150 RLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 344332 234688999999999999886542 11 1356789999999976554
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.00093 Score=68.38 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=56.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLL 289 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~Ll 289 (617)
..+.++|.+|+|||.||..+++.+...-..++|+. ..++...+...-... ........+.+.+- =||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t----------~~~l~~~l~~~~~~~--~~~~~~~~~~l~~~-DLL 250 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT----------ADELIEILREIRFNN--DKELEEVYDLLINC-DLL 250 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE----------HHHHHHHHHHHHhcc--chhHHHHHHHhccC-CEE
Confidence 57899999999999999999999766545566665 122333332211111 11112223334332 489
Q ss_pred EEeCCC----CHHhHHHHHcccCCC-CCCcEEEEEcCC
Q 037173 290 VFDDVN----HPGQIESLIGCLDEL-ASGSRVIITTRD 322 (617)
Q Consensus 290 VLDdv~----~~~~~~~l~~~l~~~-~~gs~IlvTTR~ 322 (617)
||||+. +......+...+... ..+..+||||..
T Consensus 251 IIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 251 IIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 999993 222233444433321 235568888874
No 164
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.36 E-value=0.0038 Score=57.21 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=74.1
Q ss_pred cchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh--------------------ccCceEEEEechhh
Q 037173 190 GVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR--------------------CFEGSYFALDVREA 249 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~~~~~~~~~ 249 (617)
|-+...+.|.+.+..+ .-...+.++|+.|+||+++|..+++.+-. ..+...|+.... .
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-K 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT-S
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc-c
Confidence 4556667777777532 22456889999999999999999987311 123333332000 0
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCccc-c
Q 037173 250 EETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQV-L 326 (617)
Q Consensus 250 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v-~ 326 (617)
.....++++. ++...+.... ..++.=++|+||++ +.+....++..+.....++.+|++|.+..- .
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~-----------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP-----------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred cchhhHHHHH-HHHHHHHHHH-----------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 0011222222 2222211110 12355699999997 456778888888776789999988887642 2
Q ss_pred ccc-CcceEEEeccCC
Q 037173 327 ENC-WVNQIYRMKELV 341 (617)
Q Consensus 327 ~~~-~~~~~~~l~~L~ 341 (617)
+.. .....+.+.+++
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 211 223556666653
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.34 E-value=0.00045 Score=72.50 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh--ccCceEEEEechhhhccCCHHHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR--CFEGSYFALDVREAEETGRIKDLQKELL 263 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (617)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.... .+....|+. +.+.....++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhccc-
Confidence 4577888899999888863 246888999999999999999998643 345555665 44444444333221
Q ss_pred HHHhcCCCCC-----CH-HHHHHHH--cCCCeEEEEeCCCC
Q 037173 264 SKLLNDGNAR-----NV-ESQLNRL--ARKKVLLVFDDVNH 296 (617)
Q Consensus 264 ~~l~~~~~~~-----~~-~~l~~~L--~~k~~LlVLDdv~~ 296 (617)
....... .. ..+.... .++++++|+|+++.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 1111110 11 1222222 24689999999964
No 166
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0023 Score=65.91 Aligned_cols=144 Identities=20% Similarity=0.163 Sum_probs=83.3
Q ss_pred CcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc---------------------CceEEEEe
Q 037173 187 GLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF---------------------EGSYFALD 245 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~~~~ 245 (617)
.++|-+....++..+..........+.++|++|+||||+|..+++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 367777788888888764333444699999999999999999999854222 2222222
Q ss_pred chhhhccCC---HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEc
Q 037173 246 VREAEETGR---IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 246 ~~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
.+.... ..+..+++......... .++.-++++|+++. .+....+...+......+.+|++|
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~~-----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESPL-----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCCC-----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 111111 22222222222211100 24567999999974 345566666666556788888888
Q ss_pred CCc-cccccc-CcceEEEeccCChhHH
Q 037173 321 RDK-QVLENC-WVNQIYRMKELVDVDA 345 (617)
Q Consensus 321 R~~-~v~~~~-~~~~~~~l~~L~~~ea 345 (617)
... .+.... .....+++.+.+..+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred CChhhccchhhhcceeeecCCchHHHH
Confidence 743 233211 2235666766433333
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0013 Score=76.62 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCCcccchhhHHHHHHHhhhcC-------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIRS-------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..++.+...+.... ....++.++|++|+|||++|+.++......-...+.+. +.........
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~~~-- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKHSV-- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccchH--
Confidence 3568999999999998886321 12457889999999999999999987543322223332 2222111111
Q ss_pred HHHHHHHHHhcCCCCC----CHHHHHHHHcCCCe-EEEEeCCC--CHHhHHHHHcccCCC-----------CCCcEEEEE
Q 037173 258 LQKELLSKLLNDGNAR----NVESQLNRLARKKV-LLVFDDVN--HPGQIESLIGCLDEL-----------ASGSRVIIT 319 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~----~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~l~~~-----------~~gs~IlvT 319 (617)
..+.+..+.. ....+.+.++.+++ +|+||+++ +.+.++.++..+... -..+.||+|
T Consensus 641 ------~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ------ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ------HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1121111111 11344455544544 89999997 455666666655322 123447777
Q ss_pred cCC
Q 037173 320 TRD 322 (617)
Q Consensus 320 TR~ 322 (617)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 168
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.001 Score=74.11 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=82.2
Q ss_pred CCCcccchhhHHHHHHHhhh-------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCI-------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..+..+.+.+.. .+.+..+....|+.|||||.||+.++..+-+.=+.-+-+ ++++......
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHs--- 565 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHS--- 565 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHH---
Confidence 35689999999999887752 223456788899999999999999998753221222222 2222222222
Q ss_pred HHHHHHHHHhcCCCCC----CHHHHHHHHcCCCe-EEEEeCCC--CHHhHHHHHcccCCC----C-------CCcEEEEE
Q 037173 258 LQKELLSKLLNDGNAR----NVESQLNRLARKKV-LLVFDDVN--HPGQIESLIGCLDEL----A-------SGSRVIIT 319 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~----~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~l~~~----~-------~gs~IlvT 319 (617)
.+.+.+..+.. .-..+-+..+.+|| +|.||+++ +++.++-|+..+..+ + .++-||+|
T Consensus 566 -----VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 566 -----VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred -----HHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 23343333322 22567778888988 88899996 567788887776543 1 24557777
Q ss_pred cC
Q 037173 320 TR 321 (617)
Q Consensus 320 TR 321 (617)
|.
T Consensus 641 SN 642 (786)
T COG0542 641 SN 642 (786)
T ss_pred cc
Confidence 76
No 169
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.27 E-value=0.0004 Score=52.15 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=46.6
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCC
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPL 585 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i 585 (617)
+++.+.+.... ...++...|.++++|++|+++++.+. .+|... .+.+|++|++++|+|
T Consensus 2 ~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNK---LTEIPPDSFSNLPNLETLDLSNNNLT---SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSST---ESEECTTTTTTGTTESEEEETSSSES---EEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCC---CCccCHHHHcCCCCCCEeEccCCccC---ccCHHHHcCCCCCCEEeCcCCcC
Confidence 45566665543 44678889999999999999999776 777655 999999999999975
No 170
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.26 E-value=0.0082 Score=61.22 Aligned_cols=151 Identities=23% Similarity=0.262 Sum_probs=81.5
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc--cCCHHHHHHHHHHHHhcCCCCCCHHHHHHH--H
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE--TGRIKDLQKELLSKLLNDGNARNVESQLNR--L 282 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~--L 282 (617)
..++.++|||++|.|||.+|+.+++...-.| ......++-. ....+..+++++... .+. -
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A------------~~~a~~ 209 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREA------------ADIIKK 209 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHH------------HHHhhc
Confidence 3468999999999999999999999864332 2222222111 112233333333221 111 1
Q ss_pred cCCCeEEEEeCCCCH------------HhH--HHHHcccC--------------CCCCCcEEEEEcCCccccccc-----
Q 037173 283 ARKKVLLVFDDVNHP------------GQI--ESLIGCLD--------------ELASGSRVIITTRDKQVLENC----- 329 (617)
Q Consensus 283 ~~k~~LlVLDdv~~~------------~~~--~~l~~~l~--------------~~~~gs~IlvTTR~~~v~~~~----- 329 (617)
++++++|++|+++.. .+. ..++.... ...++..||+||.........
T Consensus 210 ~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpG 289 (413)
T PLN00020 210 KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDG 289 (413)
T ss_pred cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCC
Confidence 568999999999521 111 23332211 124556788888766543211
Q ss_pred CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 330 WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 330 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
.-+..| ..-+.++-.+++..+. .....+ .....+|++...|-|+
T Consensus 290 RfDk~i--~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 290 RMEKFY--WAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCcee--CCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 112233 3345566666666554 222222 2456677777777775
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.26 E-value=0.0017 Score=75.35 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=66.6
Q ss_pred CCCcccchhhHHHHHHHhhhc-------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIR-------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..++.+...+... .....++.++|++|+|||+||+.+++.....-...+.+. +......
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~----- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK----- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh-----
Confidence 346889999999998877522 112357889999999999999999987543322233333 2222111
Q ss_pred HHHHHHHHHhcCCCCC----CHHHHHHHHcCCC-eEEEEeCCC--CHHhHHHHHcccC
Q 037173 258 LQKELLSKLLNDGNAR----NVESQLNRLARKK-VLLVFDDVN--HPGQIESLIGCLD 308 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~----~~~~l~~~L~~k~-~LlVLDdv~--~~~~~~~l~~~l~ 308 (617)
.....+.+..+.. .-..+.+.++.++ -+|+||+++ +.+.+..+...+.
T Consensus 641 ---~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 ---HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred ---hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 1112222221111 1123444444444 599999997 5566666665553
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.26 E-value=0.0015 Score=75.73 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=75.6
Q ss_pred CCCcccchhhHHHHHHHhhhc-------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIR-------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..++.+...+... ......+.++|++|+|||+||+.+++.+-..-...+-+ ++++.........
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH
Confidence 356899999999998877521 11234677999999999999999998753222222222 2222222222221
Q ss_pred HHHHHHHHHhcCCCC---C-CHHHHHHHHcCCCe-EEEEeCCC--CHHhHHHHHcccCCC-----------CCCcEEEEE
Q 037173 258 LQKELLSKLLNDGNA---R-NVESQLNRLARKKV-LLVFDDVN--HPGQIESLIGCLDEL-----------ASGSRVIIT 319 (617)
Q Consensus 258 l~~~l~~~l~~~~~~---~-~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~l~~~-----------~~gs~IlvT 319 (617)
+.+..+. . ....+.+.++.+++ +++||+++ +.+.++.++..+... -..+.||+|
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1111111 1 12456666776765 88999997 456666666655432 134556777
Q ss_pred cCC
Q 037173 320 TRD 322 (617)
Q Consensus 320 TR~ 322 (617)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 173
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.01 Score=64.55 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=85.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC-ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE-GSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV 287 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~ 287 (617)
..-|.|.|+.|+|||+||+++++.+...-. .+.++. ... .....++++++.+- ....+.+...+-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~-l~~~~~e~iQk~l~------------~vfse~~~~~PS 496 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CST-LDGSSLEKIQKFLN------------NVFSEALWYAPS 496 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chh-ccchhHHHHHHHHH------------HHHHHHHhhCCc
Confidence 457899999999999999999998654322 223332 111 11223444444332 223345677899
Q ss_pred EEEEeCCCCH--------Hh-------HHHHH----cccCCCCCCcEEEEEcCCcccc-----cccCcceEEEeccCChh
Q 037173 288 LLVFDDVNHP--------GQ-------IESLI----GCLDELASGSRVIITTRDKQVL-----ENCWVNQIYRMKELVDV 343 (617)
Q Consensus 288 LlVLDdv~~~--------~~-------~~~l~----~~l~~~~~gs~IlvTTR~~~v~-----~~~~~~~~~~l~~L~~~ 343 (617)
++||||++.. .+ +..++ ......+..-.+|.|.....-. ...-......++.+...
T Consensus 497 iIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~ 576 (952)
T KOG0735|consen 497 IIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVT 576 (952)
T ss_pred EEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchh
Confidence 9999999521 11 11111 1111112222445554443211 11123456788888888
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHH
Q 037173 344 DAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQ 382 (617)
Q Consensus 344 ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~ 382 (617)
+-.++++... .... .....+...-+..+|+|. |.-+.
T Consensus 577 ~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 577 RRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred HHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHH
Confidence 8777776654 2222 222333444588888875 33333
No 174
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.21 E-value=0.0003 Score=64.92 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=32.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc-----ccccC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL-----NIHAE 593 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L-----i~~l~ 593 (617)
.+++.+.+...... . -+.+..++.|++|+++++.+. .++..+ .+.+|+.|+|+++.|..+ ...++
T Consensus 42 ~~L~~L~Ls~N~I~---~--l~~l~~L~~L~~L~L~~N~I~---~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT---K--LEGLPGLPRLKTLDLSNNRIS---SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp TT--EEE-TTS--S-------TT----TT--EEE--SS------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred cCCCEEECCCCCCc---c--ccCccChhhhhhcccCCCCCC---ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 45666655544332 1 224667788888888887665 554444 466788888888887776 55778
Q ss_pred CeeEEecCCCCccccC
Q 037173 594 NLVSLKCLSAKLNNFG 609 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp 609 (617)
+|++|+|.++.+.+.+
T Consensus 114 ~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKK 129 (175)
T ss_dssp T--EEE-TT-GGGGST
T ss_pred CcceeeccCCcccchh
Confidence 8888888888776543
No 175
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.20 E-value=0.0093 Score=59.40 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+.|.|++|+|||+||+.+++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999754
No 176
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.20 E-value=0.0015 Score=75.45 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCCcccchhhHHHHHHHhhh-------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCI-------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..++.+.+.+.. ......++.++|++|+|||.||+.++..+.......+ ..++..........
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~-~~dmse~~~~~~~~- 642 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLI-TINMSEFQEAHTVS- 642 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceE-EEeHHHhhhhhhhc-
Confidence 35689999999999887742 1223457899999999999999999987543322212 22222222111111
Q ss_pred HHHHHHHHHhcCCCCC----CHHHHHHHHcCCC-eEEEEeCCC--CHHhHHHHHcccCCCC-----------CCcEEEEE
Q 037173 258 LQKELLSKLLNDGNAR----NVESQLNRLARKK-VLLVFDDVN--HPGQIESLIGCLDELA-----------SGSRVIIT 319 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~----~~~~l~~~L~~k~-~LlVLDdv~--~~~~~~~l~~~l~~~~-----------~gs~IlvT 319 (617)
.+.+..+.. .-..+.+.++.++ -+|+||+++ +.+.++.+...+.... ..+-||+|
T Consensus 643 -------~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 643 -------RLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -------cccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111111 1123444554444 599999996 4455666655543321 34566777
Q ss_pred cCC
Q 037173 320 TRD 322 (617)
Q Consensus 320 TR~ 322 (617)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 177
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.19 E-value=0.00056 Score=60.99 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=61.7
Q ss_pred ccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhc
Q 037173 189 VGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLN 268 (617)
Q Consensus 189 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 268 (617)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..-... ...++.. . ... .. .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~--~~~~~~~-~-~~~-~~-----~~~l~~--- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA--NGPFIVI-D-CAS-LP-----AELLEQ--- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC--CS-CCCC-C-HHC-TC-----HHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc--CCCeEEe-c-hhh-Cc-----HHHHHH---
Confidence 577788888888776433444578899999999999999888763321 1122210 0 000 11 111111
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCC-CCCcEEEEEcCCc
Q 037173 269 DGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDEL-ASGSRVIITTRDK 323 (617)
Q Consensus 269 ~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~~gs~IlvTTR~~ 323 (617)
.+.-.|+|+|++. .+....+...+... ....|+|.||..+
T Consensus 68 ---------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 ---------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 2455788999974 34444455444322 5678999998864
No 178
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.032 Score=57.43 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=61.4
Q ss_pred CCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC-ccccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCC
Q 037173 284 RKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD-KQVLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHL 359 (617)
Q Consensus 284 ~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 359 (617)
++.=++|+|+++ +.+..+.++..+..-.+++.+|++|.+ ..+.+.. .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 344588999997 556778888888766677766655554 4444332 224689999999999999887642 1
Q ss_pred ChhHHHHHHHHHHHccCCchHHHHH
Q 037173 360 DASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 360 ~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.+ ...++..++|.|+....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999855443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0049 Score=68.93 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=87.2
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-c-----CceEEEEechhhhc----cC
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-F-----EGSYFALDVREAEE----TG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~~~~~~~~~~~----~~ 253 (617)
.-++++||++|+.++.+.|.....+-+ .++|.+|+|||+++.-++.++... - +..++..+++..-. ..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRG 245 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRG 245 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccC
Confidence 346799999999999999974433333 367999999999999999984332 1 22333333322111 22
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-----------HhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-----------GQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.+++-++.++..+. +.++.+|++|.+... +.-+-+.+.+.. +.--.|-.||-+
T Consensus 246 eFEeRlk~vl~ev~---------------~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~ 309 (786)
T COG0542 246 EFEERLKAVLKEVE---------------KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLD 309 (786)
T ss_pred cHHHHHHHHHHHHh---------------cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHH
Confidence 23333333322221 234899999998431 122333444331 222234556554
Q ss_pred ccc------ccccCcceEEEeccCChhHHHHHHHHh
Q 037173 323 KQV------LENCWVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 323 ~~v------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
+.- +......+.+.+...+.+++..++...
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 421 001123467889999999999988753
No 180
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.15 E-value=0.0061 Score=55.16 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=63.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHH-----hcC-----CCC-CC----
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKL-----LND-----GNA-RN---- 274 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-----~~~-----~~~-~~---- 274 (617)
..|-|++..|.||||+|...+-+...+-..+.++..+... ...+-...++.+ ..+ +.. .+. .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 3677888889999999999999866654445554433321 122223333332 000 000 000 01
Q ss_pred ---HHHHHHHHcCCCe-EEEEeCCCC-----HHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 275 ---VESQLNRLARKKV-LLVFDDVNH-----PGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 275 ---~~~l~~~L~~k~~-LlVLDdv~~-----~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
.+..++.+....| |+|||++-. .-..+.+...+.....+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1333444555444 999999932 2233444444444457889999999853
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00063 Score=62.73 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=25.6
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh---hccCceEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS---RCFEGSYF 242 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~ 242 (617)
.|.|+|++|+||||||+.+++... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 588999999999999999999843 23555554
No 182
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.08 E-value=0.0036 Score=66.43 Aligned_cols=46 Identities=22% Similarity=0.108 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...++||++.++.+...+..+ .-|.|.|++|+|||+||+.++....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 456999999999998877533 2588999999999999999998754
No 183
>PHA00729 NTP-binding motif containing protein
Probab=97.08 E-value=0.0045 Score=59.27 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=23.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999854
No 184
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.08 E-value=0.0004 Score=48.11 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc
Q 037173 548 PKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL 588 (617)
Q Consensus 548 ~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L 588 (617)
++|++|+++++.+. .+|..+ .+.+|++|++++++|+.+
T Consensus 1 ~~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc---ccCchHhCCCCCCEEEecCCCCCCC
Confidence 57999999999877 888878 999999999999999876
No 185
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.08 E-value=0.00089 Score=79.93 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=21.3
Q ss_pred CCCceEEEecCCCCcc-c---ccccCCeeEEecCCCCcc-ccCCcccc
Q 037173 572 FAELRHLEWQQYPLKT-L---NIHAENLVSLKCLSAKLN-NFGMMFRY 614 (617)
Q Consensus 572 l~~Lr~L~l~~~~i~~-L---i~~l~~L~~L~l~~t~i~-~Lp~~i~~ 614 (617)
+.+|++|+|+++.+.. + ++++.+|++|+|++|.+. .+|..+.+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 186 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh
Confidence 3344444444444432 2 455666666666666543 45554433
No 186
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.05 E-value=0.013 Score=58.48 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=97.2
Q ss_pred cCCCcccchhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc--CCHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET--GRIKDLQ 259 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~l~ 259 (617)
+...++|-.++..++..++.. --++...|.|+|+.|.|||+|......+ .+.+.....+..+.+.-.. ..+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 346799999999999998862 1233456889999999999998888777 4556555555544332222 2233444
Q ss_pred HHHHHHHhcCC-----CCCCHHHHHHHHc------CCCeEEEEeCCCCH----H--hHHHHHcccC-CCCCCcEEEEEcC
Q 037173 260 KELLSKLLNDG-----NARNVESQLNRLA------RKKVLLVFDDVNHP----G--QIESLIGCLD-ELASGSRVIITTR 321 (617)
Q Consensus 260 ~~l~~~l~~~~-----~~~~~~~l~~~L~------~k~~LlVLDdv~~~----~--~~~~l~~~l~-~~~~gs~IlvTTR 321 (617)
.++..++.... -.+++..+.+.|+ +.+++.|+|.++-- . -+-.+...-. ...|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44443333221 1124577777774 24688899888631 1 1111222111 2246677789999
Q ss_pred Cccc-------ccccCcceEEEeccCChhHHHHHHHHhh
Q 037173 322 DKQV-------LENCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 322 ~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
-... -....-..++-++.++-++-..+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6522 1122222355556666666666665544
No 187
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.05 E-value=0.00069 Score=69.22 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=41.6
Q ss_pred CcccchhhHHHHHHHhhhc----CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 187 GLVGVAWRIKEIESLLCIR----SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999998632 234689999999999999999999987543
No 188
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.04 E-value=0.012 Score=56.51 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=97.4
Q ss_pred CCCcccchhhHHH---HHHHhhhc----CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKE---IESLLCIR----SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
-++.||.+....+ |.+.|... .-.++-|..+|++|.|||.+|+++++.....| +. +. ..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~----vk----at~ 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL----VK----ATE 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE----ec----hHH
Confidence 3568888766554 34445321 22378899999999999999999998744222 22 10 111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH--------------HhHHHHHcccCC--CCCCcEEEEEc
Q 037173 258 LQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP--------------GQIESLIGCLDE--LASGSRVIITT 320 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~--~~~gs~IlvTT 320 (617)
+.. ..++.. ...+..+.++- +..++++.+|.++.. +..+.++..+.. .+.|...|..|
T Consensus 187 liG---ehVGdg--ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaT 261 (368)
T COG1223 187 LIG---EHVGDG--ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAAT 261 (368)
T ss_pred HHH---HHhhhH--HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeec
Confidence 111 111100 00122333332 457899999998531 234445544432 24566666666
Q ss_pred CCccccccc---CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 321 RDKQVLENC---WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 321 R~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
.....+... .....++...-+++|-.+++..++-.-.-+. ..-.+.++++.+|+.
T Consensus 262 N~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S 319 (368)
T COG1223 262 NRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS 319 (368)
T ss_pred CChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence 666554321 2345677888889999999988873222111 112566777777753
No 189
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0027 Score=72.08 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCCcccchhhHHHHHHHhhhc-------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIR-------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
...++|.+..++.|.+.+... ......+.++|++|+|||++|+.++...... .+.+. +.........
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~id-~se~~~~~~~-- 530 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFD-MSEYMERHTV-- 530 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEee-chhhcccccH--
Confidence 346899999999998887621 1224578899999999999999998876321 12222 2222222111
Q ss_pred HHHHHHHHHhcCCCCC----CHHHHHHHHcCCC-eEEEEeCCCC--HHhHHHHHcccC
Q 037173 258 LQKELLSKLLNDGNAR----NVESQLNRLARKK-VLLVFDDVNH--PGQIESLIGCLD 308 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~----~~~~l~~~L~~k~-~LlVLDdv~~--~~~~~~l~~~l~ 308 (617)
..+.+..+.. .-..+.+.++.++ .+++||+++. .+.++.++..+.
T Consensus 531 ------~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 531 ------SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred ------HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 2222211111 1123444555444 5999999974 455566655443
No 190
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.02 E-value=0.0022 Score=61.00 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=60.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCCCeE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNV-ESQLNRLARKKVL 288 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~l~~~L~~k~~L 288 (617)
.++.|+|+.|+||||++..+...+.......++...- .. ...... ...+..+.......... +.++..++..+=+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~--E~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI--EFVHES-KRSLINQREVGLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc--cccccC-ccceeeecccCCCccCHHHHHHHHhcCCcCE
Confidence 4789999999999999999888765544444443310 00 000000 00011100000111122 5566677778889
Q ss_pred EEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 289 LVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 289 lVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
+++|++.+.+.+....... ..|..++.|+-...
T Consensus 78 ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 78 ILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred EEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence 9999998877666544432 24555777765543
No 191
>PLN03150 hypothetical protein; Provisional
Probab=97.02 E-value=0.00084 Score=75.42 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=67.0
Q ss_pred eEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-c---ccccCCeeE
Q 037173 523 IKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-L---NIHAENLVS 597 (617)
Q Consensus 523 ~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-L---i~~l~~L~~ 597 (617)
+..+.+..... ....+..+.++++|+.|+|+++.+. ..+|..+ .+.+|++|+|+++.+.. + +++|.+|++
T Consensus 420 v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 45555443332 2234457889999999999998653 3788888 99999999999999874 4 889999999
Q ss_pred EecCCCCcc-ccCCcccc
Q 037173 598 LKCLSAKLN-NFGMMFRY 614 (617)
Q Consensus 598 L~l~~t~i~-~Lp~~i~~ 614 (617)
|+|++|++. .+|..++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EECcCCcccccCChHHhh
Confidence 999999877 68877654
No 192
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.02 E-value=3.2e-05 Score=68.89 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=66.5
Q ss_pred hhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCcccccc
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFRYIY 616 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~~L~ 616 (617)
+..|-.|.-||.|.|.++.+. -+|..+ .|++|+.|.++.+++-+| |+.|..|+.|.+.+++++-||.++..|.
T Consensus 120 pgnff~m~tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 120 PGNFFYMTTLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred CcchhHHHHHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 345567999999999999777 999999 999999999999999888 9999999999999999999999998774
No 193
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0092 Score=63.75 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=92.2
Q ss_pred CCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 185 NKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
-.++=|.+..+.+|.+++.. +-...+-|.+||++|.|||.||+.++.+..-.| +. ++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp-- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP-- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch--
Confidence 45677999999999887742 113467789999999999999999998754332 22 1111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH--------H-----hHHHHHcccCCC------CCCc
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP--------G-----QIESLIGCLDEL------ASGS 314 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--------~-----~~~~l~~~l~~~------~~gs 314 (617)
++.+.+.++.. ..+..+.+ .-...++++++|+++.. . ...+|+..+... +.+.
T Consensus 258 ------eivSGvSGESE-kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 258 ------EIVSGVSGESE-KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred ------hhhcccCcccH-HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 22222222111 01222222 23567999999999631 0 123333333211 2233
Q ss_pred EEEE-EcCCccccccc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC
Q 037173 315 RVII-TTRDKQVLENC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV 377 (617)
Q Consensus 315 ~Ilv-TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 377 (617)
-||- |+|...+-... ..++.+.+.--++..-.+++...+-+-.... .+ ..++|++.+-|.
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DF--DFKQLAKLTPGF 395 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-Cc--CHHHHHhcCCCc
Confidence 3333 44544332222 2345677777676666666665553222111 11 145566666554
No 194
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.01 E-value=0.0057 Score=70.59 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCcccchhhHHHHHHHhhh----cCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 186 KGLVGVAWRIKEIESLLCI----RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
...+|.+.-.+.+.+++.. +....+++.++|++|+|||++|+.+++.....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578988888888886642 222345899999999999999999999865443
No 195
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.00 E-value=0.047 Score=53.03 Aligned_cols=226 Identities=13% Similarity=0.158 Sum_probs=125.9
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh------ccCceEEEEechh------hhcc-
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR------CFEGSYFALDVRE------AEET- 252 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~------~~~~- 252 (617)
+.+.++++.-..+.+... .++.+-..++|++|.||-|.+..+.+++-. +-+...|...... ++.+
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346777777777777664 345778899999999999999999887322 1223334331111 1111
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe-EEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEE
Q 037173 253 ----------GRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV-LLVFDDVNH--PGQIESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 253 ----------~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvT 319 (617)
..-.-+.+++++.+.....- +.-..+.| ++|+-.++. .+.-..+........+.+|+|+.
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~ 163 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILV 163 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEE
Confidence 11122333444443322100 01123344 566666653 23444555555445678888776
Q ss_pred cCCc--ccccccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhC--C-----
Q 037173 320 TRDK--QVLENCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLC--G----- 390 (617)
Q Consensus 320 TR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~--~----- 390 (617)
..+- -+.+.-...-.+++...+++|....++...-...-. ...+++.+|+++++|+---.-.+-..++ +
T Consensus 164 cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 164 CNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred ecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc--CcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 4432 111111122467899999999999998877443322 2278899999999998543333322221 1
Q ss_pred ----CCHHHHHHHHHHHcc-----CCCchHHHHHHHcHhcC
Q 037173 391 ----RSKEVWESAMRKLEI-----IPHVDILKVLKISYDSL 422 (617)
Q Consensus 391 ----~~~~~w~~~l~~l~~-----~~~~~i~~~l~~sy~~L 422 (617)
-+.-+|+-+..+... ..+..+..+-..-|+-|
T Consensus 242 ~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 242 NSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 135679888877533 33444544444444433
No 196
>PRK04296 thymidine kinase; Provisional
Probab=96.97 E-value=0.0021 Score=60.68 Aligned_cols=107 Identities=16% Similarity=0.065 Sum_probs=59.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHH---c
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNA---RNVESQLNRL---A 283 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~~l~~~L---~ 283 (617)
.++.|+|+.|.||||+|..++.+...+...++++.. ......... .+...++..-.. .....+.+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEEEG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCC----cEecCCCCcccceEeCChHHHHHHHHhhC
Confidence 478899999999999999999987665444444420 001111111 222222211110 1223333332 2
Q ss_pred CCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 284 RKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 284 ~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
++.-+||+|.+.- .+++..+...+. ..|..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2445999999953 344554544433 46889999998743
No 197
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.95 E-value=0.00067 Score=58.80 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|.|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0028 Score=72.53 Aligned_cols=158 Identities=12% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCcccchhhHHHHHHHhhh----cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCI----RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
...+|.++-.+.+.++|.. ......+++++|++|+||||+|+.++......|-. +. .+.. .+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~-~~~~---~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA-LGGV---RDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE-cCCC---CCHHHhccc
Confidence 4589999999999988862 12235689999999999999999999875443321 11 1111 111111100
Q ss_pred HHHHHhcCCCCCCH-HHHHHHHcCCCeEEEEeCCCCHH------hHHHHHcccCC---------------CCCCcEEEEE
Q 037173 262 LLSKLLNDGNARNV-ESQLNRLARKKVLLVFDDVNHPG------QIESLIGCLDE---------------LASGSRVIIT 319 (617)
Q Consensus 262 l~~~l~~~~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~l~~---------------~~~gs~IlvT 319 (617)
- ....+..+ ..+ ..+. .....+-+++||.++... -...+...+.. .-.+..+|.|
T Consensus 395 ~-~~~~g~~~-G~~~~~l~-~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 395 R-RTYIGSMP-GKLIQKMA-KVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred h-hccCCCCC-cHHHHHHH-hcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 0 00000000 011 1121 122234478999996321 12344433321 0134445556
Q ss_pred cCCccccccc-CcceEEEeccCChhHHHHHHHHhh
Q 037173 320 TRDKQVLENC-WVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 320 TR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
+....+.... ....++++.+++.+|-.++...+.
T Consensus 472 aN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 472 SNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6543322211 223678999999999988887766
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.92 E-value=0.039 Score=60.18 Aligned_cols=193 Identities=12% Similarity=0.104 Sum_probs=115.8
Q ss_pred cCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhh--------hccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKIS--------RCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--------~~f~~~~~~~~~~~~~~~ 252 (617)
.+..+-+|+.+..+|...+.. .......+=|.|.+|.|||..+..|.+.+. ..|+ .+.++. -.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINg----m~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEING----LRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcc----eee
Confidence 567788999999999998862 223345888999999999999999998643 1233 233332 223
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHc-----CCCeEEEEeCCCCH-----HhHHHHHcccCCCCCCcEEEEEc
Q 037173 253 GRIKDLQKELLSKLLNDGNAR--NVESQLNRLA-----RKKVLLVFDDVNHP-----GQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~--~~~~l~~~L~-----~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
....++...|...+.+..... .++.+..+.. .+++++++|+++.. +.+-.++... ..++++++|-+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--TLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--cCCCCceEEEE
Confidence 457788888888887664333 4566666664 45689999998633 2233333221 24677765543
Q ss_pred CCc--cc---------ccccCcceEEEeccCChhHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHccCCchHHHHH
Q 037173 321 RDK--QV---------LENCWVNQIYRMKELVDVDAHKLFCQCAFRGGH-LDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 321 R~~--~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
=.. +. ...+ ....+..+|.+.++-.++...+..+... .....+-++++++...|..-.|+...
T Consensus 547 IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 221 11 1111 2245677888888888877766533211 12233334555555555544444443
No 200
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.88 E-value=0.0065 Score=66.79 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=37.6
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999998876432 23467899999999999999998753
No 201
>PRK06696 uridine kinase; Validated
Probab=96.87 E-value=0.0023 Score=62.14 Aligned_cols=46 Identities=26% Similarity=0.242 Sum_probs=36.8
Q ss_pred chhhHHHHHHHhhh-cCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 191 VAWRIKEIESLLCI-RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 191 R~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
|++.+++|.+.+.. ...+..+|+|.|.+|+||||||+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56677777776653 34567899999999999999999999987543
No 202
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0012 Score=58.52 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFA 243 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 243 (617)
--|+|+|++|+||||+++.+++.+++. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 458899999999999999999987766 6554333
No 203
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.04 Score=56.55 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcc-ccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCC
Q 037173 285 KKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQ-VLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLD 360 (617)
Q Consensus 285 k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 360 (617)
++-++|+|+++ +....+.+...+.....++.+|++|.+.. +.... .....+.+.+++.+++.+.+.... . .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V--A 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C--C
Confidence 34455668885 44555555555544345666777777653 33221 224678999999999998886542 1 1
Q ss_pred hhHHHHHHHHHHHccCCchH
Q 037173 361 ASYTEVTRKAIKYAHGVPLA 380 (617)
Q Consensus 361 ~~~~~~~~~i~~~~~G~PLa 380 (617)
.. . ..+..++|.|+.
T Consensus 188 ~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLF 202 (325)
T ss_pred cH-H----HHHHHhCCChhh
Confidence 11 1 123568899964
No 204
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.85 E-value=0.004 Score=60.56 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=36.9
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 355555433344679999999999999999999988766666778887
No 205
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.82 E-value=0.0054 Score=60.58 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=55.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhc--------CCCCCCH-----
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLN--------DGNARNV----- 275 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--------~~~~~~~----- 275 (617)
-+-++|.|.+|+|||||++.++++.+.+|+..+++..+++ ......++.+.+...-.. ..++...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999998878877776664433 233445555555432110 0111111
Q ss_pred ----HHHHHHH--c-CCCeEEEEeCCCC
Q 037173 276 ----ESQLNRL--A-RKKVLLVFDDVNH 296 (617)
Q Consensus 276 ----~~l~~~L--~-~k~~LlVLDdv~~ 296 (617)
-.+.+++ + ++.+|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2334455 3 8899999999953
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.81 E-value=0.0093 Score=54.27 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=27.1
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
++.|+|.+|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999998765445556655
No 207
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.81 E-value=0.0048 Score=59.74 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=29.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.++|.|..|+|||||+..+.......|..++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5778999999999999999999889997666654
No 208
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.80 E-value=0.0027 Score=58.52 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=33.2
Q ss_pred cccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 188 LVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877643333356779999999999999999985
No 209
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.014 Score=63.06 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=90.7
Q ss_pred CcccchhhHHHHHHHhh-----------hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc-cCC
Q 037173 187 GLVGVAWRIKEIESLLC-----------IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE-TGR 254 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~ 254 (617)
++=|.++...+|.+... -+-...+-|.++|+||.|||++|+.+++...-.|-.+ ....-.+. ...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---kgpEL~sk~vGe 511 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---KGPELFSKYVGE 511 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---cCHHHHHHhcCc
Confidence 34457766666665442 1224577899999999999999999999865554211 00000000 011
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-------------HhHHHHHcccCCCCCCcE--EEEE
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-------------GQIESLIGCLDELASGSR--VIIT 319 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~~gs~--IlvT 319 (617)
-+..+.+++.+. -+..++++.||.++.. ..+..++..+........ ||-.
T Consensus 512 SEr~ir~iF~kA---------------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 512 SERAIREVFRKA---------------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred hHHHHHHHHHHH---------------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 122222222221 1345689999988632 123444444443333322 3333
Q ss_pred c-CCccccccc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 320 T-RDKQVLENC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 320 T-R~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
| |...+-..+ ..+..+.++.-+.+.-.++|+.++-+-.-.+. -...+|++++.|.-
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 3 333322221 25677888888888889999988843322221 12345555555543
No 210
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.79 E-value=0.0072 Score=62.15 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=59.2
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCce-EEEEechhhhccCCHHHHHHHHHHHHhcCCCCC-C
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGS-YFALDVREAEETGRIKDLQKELLSKLLNDGNAR-N 274 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~ 274 (617)
++.+.+..- ..-+-+.|+|.+|+|||||++.+++.+..+.+.+ +++..+. .....+.++++.+...+.....+. .
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 355555422 2234668999999999999999999876654332 2332222 234566777777776655432211 1
Q ss_pred ---H------HHHHHHH--cCCCeEEEEeCCC
Q 037173 275 ---V------ESQLNRL--ARKKVLLVFDDVN 295 (617)
Q Consensus 275 ---~------~~l~~~L--~~k~~LlVLDdv~ 295 (617)
. ....+++ ++++++||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 1222233 5889999999995
No 211
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.022 Score=55.72 Aligned_cols=174 Identities=13% Similarity=0.148 Sum_probs=92.4
Q ss_pred cCCCcccchhhHHHHHHHhh----------hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 184 ENKGLVGVAWRIKEIESLLC----------IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
.=..+.|.+...+.|.+..- .....-+-|.++|++|.||+.||++|+.... ..|+. ++...
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFS----vSSSD 201 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFS----VSSSD 201 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEE----eehHH
Confidence 33567788888888877542 2233467899999999999999999998643 22333 22221
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH---------HhHHHH----Hccc---CCCCCCcEE
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP---------GQIESL----IGCL---DELASGSRV 316 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~---------~~~~~l----~~~l---~~~~~gs~I 316 (617)
-+.. ..++... -+..+.+.- .+++-+|.+|.++.. +.-..+ +-.. .....|.-|
T Consensus 202 LvSK--------WmGESEk-LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSK--------WMGESEK-LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHH--------HhccHHH-HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 1111 1111000 012222222 478899999999631 111111 1111 122345566
Q ss_pred EEEcCCccccccc---CcceEEEeccCChhHHH-HHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 317 IITTRDKQVLENC---WVNQIYRMKELVDVDAH-KLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 317 lvTTR~~~v~~~~---~~~~~~~l~~L~~~ea~-~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
+-.|..+-++... .....+.+ ||.+..|. .+|.-+.+ ..+....+...+++.++..|..
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG--~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLG--DTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccC--CCccccchhhHHHHHhhcCCCC
Confidence 6667666544321 12233333 45555554 45655552 2233333455677778887764
No 212
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.79 E-value=0.022 Score=63.10 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=41.1
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999988876433334467899999999999999999863
No 213
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.024 Score=63.18 Aligned_cols=178 Identities=14% Similarity=0.130 Sum_probs=103.6
Q ss_pred cCCCcccchhhHHHHHH---Hhhh-------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 184 ENKGLVGVAWRIKEIES---LLCI-------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~---~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
.-.++.|-++..++|.+ .|.. +..-++=|.|+|++|.|||-||++++-... +-|+. ++..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGS- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGS- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echH-
Confidence 44678888876665555 4432 112367789999999999999999997532 33333 1111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-----------------HhHHHHHcccCCCCCCc-
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-----------------GQIESLIGCLDELASGS- 314 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-----------------~~~~~l~~~l~~~~~gs- 314 (617)
++...+.+.+ ...+..+...- .+.++++.+|+++.. ..+++++.....+..+.
T Consensus 379 -------EFvE~~~g~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 -------EFVEMFVGVG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -------HHHHHhcccc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111111111 11112222222 457889999988531 23555555554443333
Q ss_pred -EEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 315 -RVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 315 -~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
-++-+|+..+++.. -..+..+.++.-+...-.++|.-++-..... .+..++.+ |+...-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 33445555554332 1245678888888899999999888443332 34556666 999999988654
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.042 Score=56.91 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+.++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999987654422333433
No 215
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=96.77 E-value=0.00088 Score=37.18 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=18.7
Q ss_pred CeeEEecCCCCccccCCccc
Q 037173 594 NLVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~i~ 613 (617)
||..|++++|+|++||++++
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 68999999999999999985
No 216
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.76 E-value=0.0058 Score=58.67 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..-.++.|+|++|+|||+++.+++.........++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44679999999999999999999988766666788887
No 217
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0076 Score=59.53 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=28.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh----hhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI----SRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~ 244 (617)
-|+|.++||||.|||+|++++++++ .+.|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 4799999999999999999999983 34455444443
No 218
>PRK07667 uridine kinase; Provisional
Probab=96.74 E-value=0.0036 Score=59.29 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
++.+.+.+....+...+|+|.|.+|+||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665445556899999999999999999999987543
No 219
>PRK07261 topology modulation protein; Provisional
Probab=96.72 E-value=0.0062 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|+|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998763
No 220
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.72 E-value=0.0017 Score=77.62 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=59.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-c---ccccCC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-L---NIHAEN 594 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-L---i~~l~~ 594 (617)
..+++.+.+..... ....+..|.++++|++|+|+++.+. ..+|..+ .+.+|++|+|+++.+.. + ++++.+
T Consensus 163 l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 163 FSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLV--GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCCCEEECccCcc---cccCChhhhhCcCCCeeeccCCCCc--CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 34555665543322 1233456777888888888777543 3567777 77888888888887653 3 678888
Q ss_pred eeEEecCCCCcc-ccCCccccc
Q 037173 595 LVSLKCLSAKLN-NFGMMFRYI 615 (617)
Q Consensus 595 L~~L~l~~t~i~-~Lp~~i~~L 615 (617)
|++|+|++|++. .+|..+++|
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CCEEECcCceeccccChhHhCC
Confidence 888888888765 566655443
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.026 Score=57.86 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+..++.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999998876554
No 222
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.71 E-value=0.014 Score=65.68 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=79.6
Q ss_pred CcccchhhHHHHHHHhhhc----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHH
Q 037173 187 GLVGVAWRIKEIESLLCIR----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIK 256 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 256 (617)
.+.|.+...+++.+.+... ..-.+-+.|+|++|.|||++|+.++......| +.+. ...
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~-------- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-------- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH--------
Confidence 4556665555555443210 01134588999999999999999998754332 1121 110
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHH-HHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CCCcEEE
Q 037173 257 DLQKELLSKLLNDGNARNVESQL-NRLARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--ASGSRVI 317 (617)
Q Consensus 257 ~l~~~l~~~l~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~gs~Il 317 (617)
+... ..... ...+..+. ......+++|++|+++.. ..+..++..+... ..+.-+|
T Consensus 221 -~~~~----~~g~~-~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 221 -FVEM----FVGVG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred -hHHh----hhccc-HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 0000 00000 00111111 122457899999999643 1223333333222 2345556
Q ss_pred EEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhh
Q 037173 318 ITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAF 354 (617)
Q Consensus 318 vTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~ 354 (617)
.||..+..... -..+..+.++..+.++-.+++..+..
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 67776553321 12456788888888888888887763
No 223
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.68 E-value=0.016 Score=63.01 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=44.3
Q ss_pred cCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++--.+-++++..||.. +....+++.++|++|+||||.++.+++.. .|+..-|..
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 344566667788999999973 23346799999999999999999999875 355555654
No 224
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.63 E-value=0.011 Score=57.86 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|.+.|..+=....++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 445555433345679999999999999999999876444445667766
No 225
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.61 E-value=0.0056 Score=66.70 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=48.9
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--c
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL--A 283 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L--~ 283 (617)
.+..++..++|++|+||||||..++++.. |. ++=++ .|.......+-..|...+.... .+ .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s----------~l~ad 385 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHS----------VLDAD 385 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhcc----------ccccC
Confidence 34578999999999999999999998632 22 23333 4555555555555544443321 12 2
Q ss_pred CCCeEEEEeCCCC
Q 037173 284 RKKVLLVFDDVNH 296 (617)
Q Consensus 284 ~k~~LlVLDdv~~ 296 (617)
+++.-||+|.++-
T Consensus 386 srP~CLViDEIDG 398 (877)
T KOG1969|consen 386 SRPVCLVIDEIDG 398 (877)
T ss_pred CCcceEEEecccC
Confidence 6788999999974
No 226
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.60 E-value=0.0074 Score=62.16 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
+.++|+...+.++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998887643333456889999999999999998864
No 227
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.024 Score=58.94 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
.|-..++||||.|||++..++++.+ +.-++-..+..+....+ ++.++.. ...+-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~d----Lr~LL~~-----------------t~~kSI 289 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSD----LRHLLLA-----------------TPNKSI 289 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHH----HHHHHHh-----------------CCCCcE
Confidence 4668899999999999999999864 33344333322222221 2222221 345667
Q ss_pred EEEeCCCCHH--------------------hHHHHHcccC---CCCCCcEE-EEEcCCcccccc-----cCcceEEEecc
Q 037173 289 LVFDDVNHPG--------------------QIESLIGCLD---ELASGSRV-IITTRDKQVLEN-----CWVNQIYRMKE 339 (617)
Q Consensus 289 lVLDdv~~~~--------------------~~~~l~~~l~---~~~~gs~I-lvTTR~~~v~~~-----~~~~~~~~l~~ 339 (617)
||+.|++..- .+--|+..+. ....+-|| ++||...+-+.. -.-+-.+.+.-
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred EEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCC
Confidence 8888885320 1122333332 11223355 567766543221 12234567777
Q ss_pred CChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 340 LVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 340 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
-+.+.-..|+..+..... + ..++.+|.+...|.-+.=..++..|
T Consensus 370 Ctf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 777777788877763222 2 3455666666666666556666555
No 228
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.001 Score=38.44 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.2
Q ss_pred CeeEEecCCCCccccCCccccc
Q 037173 594 NLVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~i~~L 615 (617)
+|++|||++|+|+.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 6899999999999999998775
No 229
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.59 E-value=0.013 Score=56.65 Aligned_cols=49 Identities=22% Similarity=0.140 Sum_probs=36.1
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..|..+|..+=....++.|+|.+|+||||+|.+++......-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433344679999999999999999999988655545567775
No 230
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0023 Score=69.68 Aligned_cols=156 Identities=15% Similarity=0.258 Sum_probs=87.2
Q ss_pred CCcccchhhHHHHHHHhhh----cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCI----RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
.+-+|.++-.++|.+.|.- ..-..++++++|+||+|||+|++.+++-....|-. ..++.+.+...+..-.+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR----~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR----ISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE----EecCccccHHHhcccccc
Confidence 4568999999999998862 22335799999999999999999999987666531 112222221111100000
Q ss_pred HHHHHhcCCCCCCHHHHHHHH---cCCCeEEEEeCCCCHH------hHHHHHcccCCC-C------------CCcEE-EE
Q 037173 262 LLSKLLNDGNARNVESQLNRL---ARKKVLLVFDDVNHPG------QIESLIGCLDEL-A------------SGSRV-II 318 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~------~~~~l~~~l~~~-~------------~gs~I-lv 318 (617)
.+..+ ..++.+.+ +.++=+++||.++... --..++..+..- + .=|.| .|
T Consensus 399 YIGam--------PGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 399 YIGAM--------PGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccccC--------ChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 00000 12222222 4466689999996321 112222222110 0 11333 34
Q ss_pred EcCC-cc-c-ccccCcceEEEeccCChhHHHHHHHHhh
Q 037173 319 TTRD-KQ-V-LENCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 319 TTR~-~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
||-+ -+ + .+......++++.+.+++|-.++-.++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4433 22 1 1223345789999999999988877765
No 231
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.016 Score=61.97 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=76.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCe
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKV 287 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~ 287 (617)
..-|.+||++|.|||-||+++++...-+| +. +. +. +++....++. +..+..+.++- ...++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is----VK---GP-----ELlNkYVGES-ErAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS----VK---GP-----ELLNKYVGES-ERAVRQVFQRARASAPC 606 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee----ec---CH-----HHHHHHhhhH-HHHHHHHHHHhhcCCCe
Confidence 45688999999999999999999866554 32 11 11 1222221111 01223333333 35799
Q ss_pred EEEEeCCCCH-------------HhHHHHHcccCCC--CCCcEEEEEcCCccccc-cc----CcceEEEeccCChhHHHH
Q 037173 288 LLVFDDVNHP-------------GQIESLIGCLDEL--ASGSRVIITTRDKQVLE-NC----WVNQIYRMKELVDVDAHK 347 (617)
Q Consensus 288 LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~ 347 (617)
+|+||.++.. ..+..|+..+... ..|.-||-.|..+++.. .+ .-+..+-++.-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999999531 1344555544422 34666666665444322 21 245677888888899999
Q ss_pred HHHHhhh
Q 037173 348 LFCQCAF 354 (617)
Q Consensus 348 Lf~~~~~ 354 (617)
+++...-
T Consensus 687 ILK~~tk 693 (802)
T KOG0733|consen 687 ILKTITK 693 (802)
T ss_pred HHHHHhc
Confidence 9988774
No 232
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.56 E-value=0.063 Score=57.18 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.+.+|.++|++|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999887654
No 233
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.54 E-value=0.014 Score=55.24 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=27.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
++++.++|+.|+||||.+.+++.+...+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999988666533334443
No 234
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.51 E-value=0.015 Score=60.64 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=56.0
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCC-----
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDG----- 270 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~----- 270 (617)
.++.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.. .....++... +..++...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~------EEs~~qi~~R-a~rlg~~~~~l~l 141 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG------EESPEQIKLR-ADRLGISTENLYL 141 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC------CcCHHHHHHH-HHHcCCCcccEEE
Confidence 34555554333345699999999999999999999887665455667652 1222322221 22332211
Q ss_pred -CCCCHHHHHHHHc-CCCeEEEEeCC
Q 037173 271 -NARNVESQLNRLA-RKKVLLVFDDV 294 (617)
Q Consensus 271 -~~~~~~~l~~~L~-~k~~LlVLDdv 294 (617)
...+++.+.+.+. .++-++|+|.+
T Consensus 142 ~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 142 LAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EccCcHHHHHHHHHhcCCcEEEEcch
Confidence 1124566666664 46679999998
No 235
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.032 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999764
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.49 E-value=0.052 Score=57.64 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=36.2
Q ss_pred cccchhhHHHHHHHhh-----hcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 188 LVGVAWRIKEIESLLC-----IRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+-=..+-+.++..||. .+.-+.+++.|+|++|+||||.++.++...
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3334456788888887 445567899999999999999999998763
No 237
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.49 E-value=0.0056 Score=56.51 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=42.1
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCC-------CHHHHHHHHc
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNAR-------NVESQLNRLA 283 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-------~~~~l~~~L~ 283 (617)
++.|.|.+|+|||++|..++.+... ..+++.. ....-.+..+.+.......+... ++..+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat-----~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIAT-----AQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcC-----CCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 5889999999999999999876321 2334331 11223344455544433222211 3333333322
Q ss_pred CCCeEEEEeCC
Q 037173 284 RKKVLLVFDDV 294 (617)
Q Consensus 284 ~k~~LlVLDdv 294 (617)
.+.-++++|.+
T Consensus 75 ~~~~~VlID~L 85 (170)
T PRK05800 75 APGRCVLVDCL 85 (170)
T ss_pred CCCCEEEehhH
Confidence 33447889987
No 238
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.49 E-value=0.032 Score=56.61 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=36.0
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
...+.++=..+....+..++..+ +.|.|.|++|+||||+|+.++......|
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 33445555555566666666422 3689999999999999999999865433
No 239
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.48 E-value=0.013 Score=53.99 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=42.3
Q ss_pred EEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHcC--C
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNAR----NVESQLNRLAR--K 285 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~----~~~~l~~~L~~--k 285 (617)
+.|.|.+|+|||++|.+++.. .....+++.. ....+. +..+.+.......+... ....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 678999999999999999865 2345566652 222222 23333333222222111 22445555532 3
Q ss_pred CeEEEEeCC
Q 037173 286 KVLLVFDDV 294 (617)
Q Consensus 286 ~~LlVLDdv 294 (617)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 447999987
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.47 E-value=0.012 Score=57.26 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 244 (617)
.|.++|..+-....++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34455543334467999999999999999999988754444 4567776
No 241
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.47 E-value=0.0031 Score=67.85 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=41.1
Q ss_pred CcccchhhHHHHHHHhh----hcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 187 GLVGVAWRIKEIESLLC----IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
+++|.++.++++.+.|. ......+++.++|++|+||||||+.+++-...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 58999999999999883 23345689999999999999999999986543
No 242
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.46 E-value=0.012 Score=57.71 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=33.1
Q ss_pred HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc------cCceEEEE
Q 037173 198 IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC------FEGSYFAL 244 (617)
Q Consensus 198 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 244 (617)
|..+|..+-....++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444454333446799999999999999999998653222 25678877
No 243
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.45 E-value=0.015 Score=66.30 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..++|+...+..+.+.+..-......|.|+|.+|+|||++|+.+++.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999999877765333334578899999999999999998863
No 244
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.024 Score=58.13 Aligned_cols=93 Identities=23% Similarity=0.260 Sum_probs=60.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCC---
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGN--- 271 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~--- 271 (617)
+.++...|..+--.-.++.|-|-+|||||||..+++.++..+- .+.++. -.....++... +..++....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklR-A~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLR-ADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHH-HHHhCCCccceE
Confidence 4455566642223356899999999999999999999988766 677766 22333332221 233332211
Q ss_pred ---CCCHHHHHHHHc-CCCeEEEEeCCC
Q 037173 272 ---ARNVESQLNRLA-RKKVLLVFDDVN 295 (617)
Q Consensus 272 ---~~~~~~l~~~L~-~k~~LlVLDdv~ 295 (617)
+.+++.+.+.+. .++-++|+|-+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 225677777774 567899999983
No 245
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.42 E-value=0.0047 Score=74.67 Aligned_cols=64 Identities=25% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCceEEEEecccCccccccCCCC-CCCCceEEEecCCC-Cccc--ccccCCeeEEecCCC-CccccCCccc
Q 037173 547 MPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYP-LKTL--NIHAENLVSLKCLSA-KLNNFGMMFR 613 (617)
Q Consensus 547 ~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~-i~~L--i~~l~~L~~L~l~~t-~i~~Lp~~i~ 613 (617)
+.+|+.|+|.++.+. .+|.++ .+.+|++|+|+++. ++.+ ++.+.+|++|+|.+| .+.++|.+++
T Consensus 610 ~~~L~~L~L~~s~l~---~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 610 PENLVKLQMQGSKLE---KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred ccCCcEEECcCcccc---ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh
Confidence 345555555555433 455555 55555555555443 4444 444555555555444 3444554443
No 246
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.40 E-value=0.011 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998764
No 247
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.39 E-value=0.015 Score=58.06 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.6
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.+.++++++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999876554
No 248
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.38 E-value=0.0065 Score=63.04 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=61.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH---HHHHHHhcCCCCCCH-HHHHHHHcC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK---ELLSKLLNDGNARNV-ESQLNRLAR 284 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~---~l~~~l~~~~~~~~~-~~l~~~L~~ 284 (617)
...+.|.|+.|+||||++..+...+.......++.. .. ..+-... .+..+........+. ..++..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti----Ed---p~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI----ED---PIEYVHRNKRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE----cC---ChhhhccCccceEEccccCCCCcCHHHHHHHhhcc
Confidence 358999999999999999999887655555555543 10 1110000 000000000111233 556777889
Q ss_pred CCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 285 KKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 285 k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.+=.|++|.+.+.+.+....... ..|..++.|.-.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 99999999998887766544332 345555555543
No 249
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.37 E-value=0.02 Score=52.43 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=61.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCC-------CC--C------
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGN-------AR--N------ 274 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~--~------ 274 (617)
..|-|++-.|.||||.|...+.+...+-..++.+.-+... ...+-...++.+.-.+..... +. +
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5777888899999999999998865543334433322221 112222333322000000000 00 1
Q ss_pred -HHHHHHHHcCCCe-EEEEeCCCC-----HHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 275 -VESQLNRLARKKV-LLVFDDVNH-----PGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 275 -~~~l~~~L~~k~~-LlVLDdv~~-----~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
.+..++.+...+| |+|||.+-. .-..+.+...+....++..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1344455555555 999999832 122334444444446788999999986
No 250
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.091 Score=57.61 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=91.9
Q ss_pred CCcccchhhHHHHHHHhh---h--------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 186 KGLVGVAWRIKEIESLLC---I--------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
....|.+...+.+.+... . +-...+.+.++|++|.|||.||+++++.....|-....-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 344555655555554432 1 123456899999999999999999999644433211110
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH-------------HhHHHHHcccCCC--CCCcEEEE
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP-------------GQIESLIGCLDEL--ASGSRVII 318 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~Ilv 318 (617)
++....+... ...+..+.+ ..+..++.|.+|+++.. .....++..+... ..+..||-
T Consensus 311 --~l~sk~vGes-----ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 311 --ELLSKWVGES-----EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred --HHhccccchH-----HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 1111000000 001122222 22578999999999521 2334444444322 23444555
Q ss_pred EcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccC
Q 037173 319 TTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHG 376 (617)
Q Consensus 319 TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G 376 (617)
||..+..... ......+.+++-+.++..+.|..+.-..... -...-..+.+++.+.|
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 5555443331 1345688999999999999999988422221 0112234455555555
No 251
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.36 E-value=0.015 Score=59.78 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=35.2
Q ss_pred cccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 188 LVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
++|....+.++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888887777643333456889999999999999999875
No 252
>PTZ00494 tuzin-like protein; Provisional
Probab=96.36 E-value=0.58 Score=48.93 Aligned_cols=191 Identities=9% Similarity=0.004 Sum_probs=107.3
Q ss_pred CCcCCCCCchhh--HHHHHHHhhhhccccccc------cccCCCcccchhhHHHHHHHhhhc-CCCeEEEEEeccCCChh
Q 037173 152 SGFDSHVIRPES--KLIEAIANGVLKRLDATF------QSENKGLVGVAWRIKEIESLLCIR-SAGVYVLGIWGIGGIGK 222 (617)
Q Consensus 152 ~g~~~~~~~~e~--~~i~~i~~~v~~~l~~~~------~~~~~~~vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGK 222 (617)
-||.+.++..+. ....-.++.+.+..++.. +.....+|.|+.|-..+.+.|.+. ...++++.++|.-|.||
T Consensus 329 FgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGK 408 (664)
T PTZ00494 329 FTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGR 408 (664)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCc
Confidence 345555544322 223333444444443322 456778999999999999988743 34589999999999999
Q ss_pred hHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCC--CH-HHH-------HHHHcCCCeEEEEe
Q 037173 223 TTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNAR--NV-ESQ-------LNRLARKKVLLVFD 292 (617)
Q Consensus 223 TtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~-~~l-------~~~L~~k~~LlVLD 292 (617)
++|.+....+- --..+++. + ...++.+..+.+.++-...+. ++ +-+ +....++.=+||+-
T Consensus 409 SslcRsAvrkE---~~paV~VD----V---Rg~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk 478 (664)
T PTZ00494 409 CVPCRRAVRVE---GVALVHVD----V---GGTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR 478 (664)
T ss_pred hHHHHHHHHHc---CCCeEEEE----e---cCCcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 99998887652 23355655 2 233445566666666553332 22 222 22234455555553
Q ss_pred C--CCCHH-hHHHHHcccCCCCCCcEEEEEcCCccccc---ccCcceEEEeccCChhHHHHHHHHhh
Q 037173 293 D--VNHPG-QIESLIGCLDELASGSRVIITTRDKQVLE---NCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 293 d--v~~~~-~~~~l~~~l~~~~~gs~IlvTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
= -.+.. ...+.. .+.....-|+|++----+.+-. .......|.+++++.++|.+.-+...
T Consensus 479 LREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 479 LREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred eccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2 22211 111111 1222245677776433322111 11233678999999999998776544
No 253
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.025 Score=54.34 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 187 GLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+.=|-.+++++|.+.... +-+.++-|.++|++|.|||-+|++++++.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 455677777777765531 12346678899999999999999999974
No 254
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.34 E-value=0.019 Score=54.47 Aligned_cols=111 Identities=24% Similarity=0.294 Sum_probs=57.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARN 274 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 274 (617)
.+.+...+. .+-+++.|.|++|.||||++..+...+...-..+++.. ... .....+....+.. ...
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----pT~----~Aa~~L~~~~~~~--a~T 72 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----PTN----KAAKELREKTGIE--AQT 72 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----SSH----HHHHHHHHHHTS---EEE
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----CcH----HHHHHHHHhhCcc--hhh
Confidence 344444443 22358889999999999999998887665422233332 111 1112222222111 012
Q ss_pred HHHHHHHH----------cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcC
Q 037173 275 VESQLNRL----------ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTR 321 (617)
Q Consensus 275 ~~~l~~~L----------~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR 321 (617)
+..+.... ..+.-+||+|++. +...+..+..... ..|+++|+.--
T Consensus 73 i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 73 IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 22221111 1234599999995 4556777766654 35778876644
No 255
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.34 E-value=0.00092 Score=67.60 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=60.5
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCcc
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMF 612 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i 612 (617)
++....+++.+|.||||..+++. ++|..+ .|++|-||+++++.|..| .|+| ||..|-|.++.+.++-++|
T Consensus 243 lpae~~~~L~~l~vLDLRdNklk---e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLK---EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred hHHHHhcccccceeeeccccccc---cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 45566778999999999999877 999999 999999999999999999 8899 9999999999887765443
No 256
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.31 E-value=0.002 Score=59.44 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCceEEEEeeccccccccccChhhhc-CCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---c-cccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFS-KMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---N-IHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~-~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i-~~l~ 593 (617)
..+.+.+.+...... .+ +.+. .+.+|++|+|+++.+. .++ ++ .+.+|+.|+++++.|+++ + ..+.
T Consensus 18 ~~~~~~L~L~~n~I~---~I--e~L~~~l~~L~~L~Ls~N~I~---~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS---TI--ENLGATLDKLEVLDLSNNQIT---KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S-----T-T----TT--EEE--SS---S-CHHHHHH-T
T ss_pred ccccccccccccccc---cc--cchhhhhcCCCEEECCCCCCc---ccc-CccChhhhhhcccCCCCCCccccchHHhCC
Confidence 345566666655432 11 1233 6789999999999877 554 45 889999999999999999 2 2589
Q ss_pred CeeEEecCCCCcccc
Q 037173 594 NLVSLKCLSAKLNNF 608 (617)
Q Consensus 594 ~L~~L~l~~t~i~~L 608 (617)
+|++|+|++++|..+
T Consensus 89 ~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 89 NLQELYLSNNKISDL 103 (175)
T ss_dssp T--EEE-TTS---SC
T ss_pred cCCEEECcCCcCCCh
Confidence 999999999999875
No 257
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.0059 Score=56.83 Aligned_cols=37 Identities=32% Similarity=0.515 Sum_probs=31.3
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3458999999999999999999999877777666664
No 258
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.27 E-value=0.017 Score=63.50 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=41.9
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
....++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 356799999999999888875444455788999999999999999998643
No 259
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.26 E-value=0.0079 Score=54.22 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.+|.|+|.+|+||||||+.+.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999887766566654
No 260
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.25 E-value=0.0034 Score=54.76 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=20.4
Q ss_pred EEEeccCCChhhHHHHHHHHHh
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (617)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 261
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.045 Score=62.32 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=69.4
Q ss_pred CcccchhhHHHHHHHhhhcC------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 187 GLVGVAWRIKEIESLLCIRS------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
.++|.++.+..|.+.+.... ...-...+.|+.|+|||.||++++.-+-+..+.-+-+. +.+...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh
Confidence 46777777888877765211 13567788999999999999999998755555444433 222222
Q ss_pred HHHHHHhcCCCCC----CHHHHHHHHcCCCe-EEEEeCCC--CHHhHHHHHccc
Q 037173 261 ELLSKLLNDGNAR----NVESQLNRLARKKV-LLVFDDVN--HPGQIESLIGCL 307 (617)
Q Consensus 261 ~l~~~l~~~~~~~----~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~l 307 (617)
..++.+..+.. ....+.+.++.++| +|+||||+ +......+...+
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 33333332221 34788889998887 67799997 344444444333
No 262
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.066 Score=55.62 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=46.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC--ceEEEEechhhhccCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE--GSYFALDVREAEETGRIKDLQKELLSKLLND----GNARNVESQLNRL 282 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~~l~~~L 282 (617)
..+++++|+.|+||||++..++.+....+. .+.++. .... .....+-++.+...++.. ....++......+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~--R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSY--RIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccc--cccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 469999999999999999999988654443 334433 1111 112223333333333322 1112344445555
Q ss_pred cCCCeEEEEeCCC
Q 037173 283 ARKKVLLVFDDVN 295 (617)
Q Consensus 283 ~~k~~LlVLDdv~ 295 (617)
.++ -++++|..-
T Consensus 214 ~~~-DlVLIDTaG 225 (374)
T PRK14722 214 RNK-HMVLIDTIG 225 (374)
T ss_pred cCC-CEEEEcCCC
Confidence 555 456689883
No 263
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.23 E-value=0.0023 Score=72.08 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-----cccc
Q 037173 519 GTEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-----NIHA 592 (617)
Q Consensus 519 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l 592 (617)
..|.++++.+...... ...-...+..+++|+.||++++.+. .+ .+| .|++|+.|.+++-+++.- +|+|
T Consensus 146 ~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~---nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNIS---NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceec--chhHHHHhhccCccceeecCCCCcc---Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 3577888887655432 1112356789999999999999766 44 677 999999999999998763 9999
Q ss_pred CCeeEEecCCCCcccc
Q 037173 593 ENLVSLKCLSAKLNNF 608 (617)
Q Consensus 593 ~~L~~L~l~~t~i~~L 608 (617)
++|++||++..+-..-
T Consensus 220 ~~L~vLDIS~~~~~~~ 235 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDD 235 (699)
T ss_pred cCCCeeeccccccccc
Confidence 9999999988754433
No 264
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.20 E-value=0.0095 Score=55.06 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=29.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEEechhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFALDVREAEE 251 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~ 251 (617)
...+.+.|+.|+|||.||+.++..+. ......+ ..++...+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~-~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLI-RIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEE-EEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchH-HHhhhcccc
Confidence 45788999999999999999999876 4433333 334444433
No 265
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.1 Score=49.85 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=80.8
Q ss_pred cchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHH
Q 037173 190 GVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDL 258 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (617)
|.+..+++|.+.+... -..++-+.++|++|.|||-||+.+++.. ...|+. ++. .++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir----vsg----sel 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR----VSG----SEL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE----ech----HHH
Confidence 4567777777665421 1245678899999999999999999852 233333 221 111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH----cCCCeEEEEeCCCCH-------------H---hHHHHHcccCCC--CCCcEE
Q 037173 259 QKELLSKLLNDGNARNVESQLNRL----ARKKVLLVFDDVNHP-------------G---QIESLIGCLDEL--ASGSRV 316 (617)
Q Consensus 259 ~~~l~~~l~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~~--~~gs~I 316 (617)
.+.. .+++ ...+++.+ ...+-+|+.|.+++. + ..-.++..+..+ .++.+|
T Consensus 218 vqk~----igeg----srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 218 VQKY----IGEG----SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHHH----hhhh----HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 1111 1111 12222222 356788999988642 1 122344444332 356788
Q ss_pred EEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhh
Q 037173 317 IITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 317 lvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
|+.|..-+++.. -..+.-++.++-+++.-.+++.-+.
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 877755444332 1234567778877777777776654
No 266
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.15 E-value=0.027 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|.|.|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999864
No 267
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.01 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+.|.++|.+|+||||+|++++..+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999876654
No 268
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.11 E-value=0.04 Score=59.25 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC-----
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND----- 269 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----- 269 (617)
+..+.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.. .....++... +..++-.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~------EEs~~qi~~r-a~rlg~~~~~l~ 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG------EESLQQIKMR-AIRLGLPEPNLY 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC------cCCHHHHHHH-HHHcCCChHHeE
Confidence 455666664333446799999999999999999998876554345677662 1222222221 1122111
Q ss_pred -CCCCCHHHHHHHHcC-CCeEEEEeCCC
Q 037173 270 -GNARNVESQLNRLAR-KKVLLVFDDVN 295 (617)
Q Consensus 270 -~~~~~~~~l~~~L~~-k~~LlVLDdv~ 295 (617)
....+++.+.+.+.. +.-++|+|.+.
T Consensus 153 ~~~e~~~~~I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 153 VLSETNWEQICANIEEENPQACVIDSIQ 180 (454)
T ss_pred EcCCCCHHHHHHHHHhcCCcEEEEecch
Confidence 112245666666644 56689999883
No 269
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.08 E-value=0.26 Score=50.22 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=34.8
Q ss_pred EEEeccCChhHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHccCCchHH
Q 037173 334 IYRMKELVDVDAHKLFCQCAFRGGHLD-ASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 334 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 381 (617)
++++++++.+|+..++....-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774433222 334455677777779999654
No 270
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.07 E-value=0.23 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.+.++.++|++|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999998754
No 271
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.07 E-value=0.012 Score=58.63 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=57.3
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC-CCC
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND-GNA 272 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~ 272 (617)
.++.+..++. ....++.|.|+.|.||||++..+.+.+...-...+.+.+..+. .+.. + .++... ...
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~----~~~~----~-~q~~v~~~~~ 135 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY----QIPG----I-NQVQVNEKAG 135 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee----cCCC----c-eEEEeCCcCC
Confidence 3444545543 2234899999999999999998887754321222333211111 0000 0 011101 111
Q ss_pred CCH-HHHHHHHcCCCeEEEEeCCCCHHhHHHHHcc
Q 037173 273 RNV-ESQLNRLARKKVLLVFDDVNHPGQIESLIGC 306 (617)
Q Consensus 273 ~~~-~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 306 (617)
.+. +.++..|+..+=.++++++.+.+....+...
T Consensus 136 ~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 136 LTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 233 6667778888999999999988766554444
No 272
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.07 E-value=0.041 Score=59.14 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=56.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC-----
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND----- 269 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----- 269 (617)
+.++.+.|..+=....++.|.|.+|+|||||+.+++.....+-..++|+.. ......+... +..++..
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~------Ees~~qi~~r-a~rlg~~~~~l~ 138 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG------EESASQIKLR-AERLGLPSDNLY 138 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc------cccHHHHHHH-HHHcCCChhcEE
Confidence 345555664333345699999999999999999999886644445677662 1223333222 2333221
Q ss_pred -CCCCCHHHHHHHHcC-CCeEEEEeCCC
Q 037173 270 -GNARNVESQLNRLAR-KKVLLVFDDVN 295 (617)
Q Consensus 270 -~~~~~~~~l~~~L~~-k~~LlVLDdv~ 295 (617)
....+++.+.+.+.. +.-++|+|.+.
T Consensus 139 ~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 139 LLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 111245666666643 56689999983
No 273
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0062 Score=66.18 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=42.8
Q ss_pred CCcccchhhHHHHHHHhh----hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 186 KGLVGVAWRIKEIESLLC----IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
.+-+|+++-.+++.+++. .++.+.++++.+|++|||||++|+.++.-+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 345899999999999886 2445578999999999999999999998765554
No 274
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.04 E-value=0.068 Score=48.64 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=27.7
Q ss_pred cchhhHHHHHHHhhhc-CCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 190 GVAWRIKEIESLLCIR-SAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
|.+..++.+.+.+... ......|+++|++|+|||||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 4444455554444211 122346789999999999999998753
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.04 E-value=0.0054 Score=58.14 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.01 Score=62.39 Aligned_cols=47 Identities=28% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCcccchh---hHHHHHHHhhhcC-------CCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 186 KGLVGVAW---RIKEIESLLCIRS-------AGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 186 ~~~vGR~~---~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+.-|.++ |++++++.|..+. .=++-|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 34567665 5556666664321 11567899999999999999999865
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=96.01 E-value=0.096 Score=55.66 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.+.+|.++|++|+||||.+..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998876655
No 278
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.96 E-value=0.0011 Score=67.19 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=64.3
Q ss_pred hhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCccccccC
Q 037173 543 AFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFRYIYI 617 (617)
Q Consensus 543 ~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~~L~~ 617 (617)
.|.++..|.-|.+..+.+. -+|... .|.+|..|+|+.+.++++ ++.|++|..|||+++.|+.||-+.++|.+
T Consensus 223 ef~gcs~L~Elh~g~N~i~---~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE---MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHH---hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCccccccee
Confidence 6778888888888877666 788877 899999999999999999 99999999999999999999999988753
No 279
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.96 E-value=0.018 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.|.++|++|+||||+|+.++......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999886543
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.96 E-value=0.029 Score=50.29 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=53.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVL 288 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~L 288 (617)
-.+++|.|..|.|||||++.++.... ...+.+++.....+.--+.+..-+ ...-.+...+..++-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~lS~G~-------------~~rv~laral~~~p~i 91 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQLSGGE-------------KMRLALAKLLLENPNL 91 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEccCCHHH-------------HHHHHHHHHHhcCCCE
Confidence 35899999999999999999876532 223444443111111001000000 0012233445567779
Q ss_pred EEEeCCC---CHHhHHHHHcccCCCCCCcEEEEEcCCcccc
Q 037173 289 LVFDDVN---HPGQIESLIGCLDELASGSRVIITTRDKQVL 326 (617)
Q Consensus 289 lVLDdv~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~ 326 (617)
+++|+.. +......+...+... +..||++|.+....
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 9999883 333333333333322 24677777765443
No 281
>PTZ00301 uridine kinase; Provisional
Probab=95.95 E-value=0.0073 Score=57.75 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=24.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998865444
No 282
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=1.7 Score=43.90 Aligned_cols=165 Identities=11% Similarity=0.062 Sum_probs=91.2
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh--------c-cC-ceEEEEechhhhccCCHHHHHHHHHHH
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR--------C-FE-GSYFALDVREAEETGRIKDLQKELLSK 265 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~-f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (617)
+.+.+.+.. ..-.++..++|..|+||+++|..+++.+-. . .+ ...++. . ......+.++. ++...
T Consensus 6 ~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCHHHHH-HHHHH
Confidence 344444432 223578889999999999999999988511 1 11 111111 0 00111222221 12222
Q ss_pred HhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCC-cccccc-cCcceEEEeccCC
Q 037173 266 LLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRD-KQVLEN-CWVNQIYRMKELV 341 (617)
Q Consensus 266 l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~ 341 (617)
+.-.. .-.+.+=++|+|+++. ....+.++..+...++++.+|++|.+ ..+.+. ......+++.+++
T Consensus 81 ~~~~~----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 81 LYFSS----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred hccCC----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 11100 0014666889999864 34566777777665677777765544 334332 2345789999999
Q ss_pred hhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHH
Q 037173 342 DVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQV 383 (617)
Q Consensus 342 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 383 (617)
.++..+.+.... .+ .+.+..++...+|.=-|+..
T Consensus 151 ~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 151 QQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 999988776531 11 23456666666662234444
No 283
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.91 E-value=0.059 Score=54.47 Aligned_cols=129 Identities=14% Similarity=0.252 Sum_probs=67.1
Q ss_pred ccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH---hhhccCceEEEEechhhhc---------cCCHH
Q 037173 189 VGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK---ISRCFEGSYFALDVREAEE---------TGRIK 256 (617)
Q Consensus 189 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~---------~~~~~ 256 (617)
-+|..+-.--.++|. ++++..|.+.|.+|.|||.||.+..-. .+..|...+.....-.+.+ ...+.
T Consensus 227 ~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 227 RPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred CcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 345444444444553 456889999999999999998876543 2344554443322211111 11112
Q ss_pred HHHHHHHHHH---hcCCC-CC-CHHHHHH----------HHcCC---CeEEEEeCCCC--HHhHHHHHcccCCCCCCcEE
Q 037173 257 DLQKELLSKL---LNDGN-AR-NVESQLN----------RLARK---KVLLVFDDVNH--PGQIESLIGCLDELASGSRV 316 (617)
Q Consensus 257 ~l~~~l~~~l---~~~~~-~~-~~~~l~~----------~L~~k---~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~I 316 (617)
.....+...+ ...+. .. .++.+.. +.+++ +-++|+|.+.+ +.++..+. ...+.|+||
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil---tR~G~GsKI 381 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL---TRAGEGSKI 381 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH---HhccCCCEE
Confidence 2222232222 11111 11 1222211 12333 45899999975 34555544 345899999
Q ss_pred EEEcCC
Q 037173 317 IITTRD 322 (617)
Q Consensus 317 lvTTR~ 322 (617)
+.|--.
T Consensus 382 Vl~gd~ 387 (436)
T COG1875 382 VLTGDP 387 (436)
T ss_pred EEcCCH
Confidence 998653
No 284
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.90 E-value=0.06 Score=65.41 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
...+-|.++|++|.|||.||+++|..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh
Confidence 34567889999999999999999986
No 285
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.89 E-value=0.023 Score=55.05 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=30.9
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+..++.+.+.....+..+|+|+|+||+|||||...+...+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3344444444444567899999999999999999999987654
No 286
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.88 E-value=0.048 Score=55.45 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444553 33345679999999999999999999888666555667776
No 287
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.88 E-value=0.02 Score=49.50 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=61.7
Q ss_pred cEEEcCccccCCCchHHHHHHHHhhCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCC-ccC------------
Q 037173 17 DVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSER-YAS------------ 82 (617)
Q Consensus 17 dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~-y~~------------ 82 (617)
.|||.|+ .| ..+++.+...|+..|+.+.+=. ....|..+.+.+.+.+.+++..|+++||+ ...
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a 77 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA 77 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence 3899996 66 5689999999998888776554 66889999999999999999999999994 221
Q ss_pred ChhhHHHHHHHHHHh
Q 037173 83 SRWCLDELLKILECK 97 (617)
Q Consensus 83 s~~c~~El~~~~~~~ 97 (617)
..-.+.|+..++.+-
T Consensus 78 R~NVifE~G~f~g~L 92 (125)
T PF10137_consen 78 RQNVIFELGLFIGKL 92 (125)
T ss_pred ccceeehhhHHHhhc
Confidence 123567888887654
No 288
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.87 E-value=0.045 Score=55.67 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3445553 23344678999999999999999999988666656677776
No 289
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.87 E-value=0.0061 Score=51.60 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.4
Q ss_pred EEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
|-|+|++|+|||+||..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999866554
No 290
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.87 E-value=0.0078 Score=63.94 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=64.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
.++..+.+.... ..++..+.++-+..||+|||+.+.+. .+|..- .-.++++|+|.++.|..+ ...|.+
T Consensus 125 ghl~~L~L~~N~---I~sv~se~L~~l~alrslDLSrN~is---~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 125 GHLEKLDLRHNL---ISSVTSEELSALPALRSLDLSRNLIS---EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cceeEEeeeccc---cccccHHHHHhHhhhhhhhhhhchhh---cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 445666555333 34566778888999999999988665 666544 445899999999999999 447889
Q ss_pred eeEEecCCCCccccCCc
Q 037173 595 LVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~ 611 (617)
|.+|.|+.++|+.||.-
T Consensus 199 L~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQR 215 (873)
T ss_pred heeeecccCcccccCHH
Confidence 99999999999988853
No 291
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.86 E-value=0.007 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 292
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.85 E-value=0.027 Score=56.01 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=23.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+.|.|+|.||+||||+|+++...+...-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 57899999999999999999998665322334443
No 293
>PRK08233 hypothetical protein; Provisional
Probab=95.84 E-value=0.0075 Score=56.36 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998753
No 294
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.81 E-value=0.029 Score=55.89 Aligned_cols=45 Identities=24% Similarity=0.082 Sum_probs=36.7
Q ss_pred HHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 200 SLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 200 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+.|..+-+..+++.|+|.+|+|||+++.++..+...+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 333333355679999999999999999999999888888888887
No 295
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.80 E-value=0.039 Score=58.28 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=25.0
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...+|.++|++|+||||++..++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999999876544
No 296
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.79 E-value=0.041 Score=51.26 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=63.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHH-----hc------CCCCCC---
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKL-----LN------DGNARN--- 274 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-----~~------~~~~~~--- 274 (617)
...|.|+|..|-||||.|...+-+...+--.+..+..+.... ..+-...+..+- .+ +. .....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 358899999999999999999988655544444444332221 122233332210 00 00 000011
Q ss_pred ----HHHHHHHHcCCCe-EEEEeCCCC-----HHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 275 ----VESQLNRLARKKV-LLVFDDVNH-----PGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 275 ----~~~l~~~L~~k~~-LlVLDdv~~-----~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
.+..++.+...+| |+|||.+-. .-..+.+...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1344455555555 999999932 122344444444446788999999975
No 297
>PRK09354 recA recombinase A; Provisional
Probab=95.78 E-value=0.049 Score=55.91 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|..+|. .+=..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4555564 33345679999999999999999999988766666778877
No 298
>PRK06762 hypothetical protein; Provisional
Probab=95.78 E-value=0.0084 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.489 Sum_probs=22.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|.|+|++|+||||+|+.+++..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999875
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.77 E-value=0.31 Score=51.94 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988765
No 300
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.75 E-value=0.017 Score=56.39 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..+..+++|.|++|+|||||++.+.......
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999876654
No 301
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.74 E-value=0.015 Score=50.88 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=28.9
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+..++.+.|...-....++.+.|.-|+|||||++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4445555454222334589999999999999999999874
No 302
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.74 E-value=0.006 Score=52.58 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=20.2
Q ss_pred EEEeccCCChhhHHHHHHHHHhhhccCc
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISRCFEG 239 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (617)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999987777753
No 303
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.72 E-value=0.01 Score=57.00 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=24.2
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 304
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.71 E-value=0.012 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEeccCCChhhHHHHHHHHHh
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (617)
|.|+|++|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.02 Score=53.17 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEeccCCChhhHHHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.|.|.|++|+||||+|+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998
No 306
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.71 E-value=0.005 Score=60.06 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=38.5
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
.+++|.+.+...... . -..+..+.+|.-|||+++... ++-.-- .|-|.+.|.|.++-|+.| .++|+.|+
T Consensus 306 ~Pkir~L~lS~N~i~---~--v~nLa~L~~L~~LDLS~N~Ls---~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLv 377 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR---T--VQNLAELPQLQLLDLSGNLLA---ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLV 377 (490)
T ss_pred ccceeEEecccccee---e--ehhhhhcccceEeecccchhH---hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhhe
Confidence 355565555433321 1 123566677777777766322 111111 344444445555555554 44555555
Q ss_pred EEecCCCCcccc
Q 037173 597 SLKCLSAKLNNF 608 (617)
Q Consensus 597 ~L~l~~t~i~~L 608 (617)
.||+++++|++|
T Consensus 378 nLDl~~N~Ie~l 389 (490)
T KOG1259|consen 378 NLDLSSNQIEEL 389 (490)
T ss_pred eccccccchhhH
Confidence 555555544443
No 307
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.16 Score=53.27 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998754
No 308
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.27 Score=54.47 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCH
Q 037173 186 KGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRI 255 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (617)
+++=|.++-..+|.+-+.. +-....=|.++|++|.|||-||++|+....-. |+. + .+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS----V---KGP 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS----V---KGP 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe----e---cCH
Confidence 3455677777777665431 22224568899999999999999999764322 233 1 111
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHc-CCCeEEEEeCCCC
Q 037173 256 KDLQKELLSKLLNDGNARNVESQLNRLA-RKKVLLVFDDVNH 296 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~ 296 (617)
+++ ....+ ..+.++.++.++-+ .++++|.||.+++
T Consensus 740 -ELL----NMYVG-qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 -ELL----NMYVG-QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -HHH----HHHhc-chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 111 11111 11224555555554 5899999999964
No 309
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.69 E-value=0.064 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-.+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999998863
No 310
>PRK15115 response regulator GlrR; Provisional
Probab=95.67 E-value=0.67 Score=50.05 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=33.8
Q ss_pred CcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 187 GLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.++|....+.++.+....-......|.|.|.+|+|||++|+.+.+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 57888777776665443222233467799999999999999888763
No 311
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.65 E-value=0.059 Score=54.94 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=33.2
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh------hccCceEEEE
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS------RCFEGSYFAL 244 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~ 244 (617)
..|.++|..+=....++-|+|++|+|||+|+.+++-... ..-..++|+.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 345556643334467888999999999999998875422 1123567877
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.64 E-value=0.043 Score=53.81 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|.++|..+=....++.|.|.+|+|||+||.++.......-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 445555434345679999999999999999998877545556677776
No 313
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.61 E-value=0.2 Score=56.89 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=37.1
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 356889888888887766532233345789999999999999999876
No 314
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.11 Score=56.65 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=92.1
Q ss_pred cCCCcccchhhHHHHHHHhh---hcC-------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 184 ENKGLVGVAWRIKEIESLLC---IRS-------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
...+..|.++..+++.+.+. .+. .-++-|.++|++|.|||.||++++-...-.| +. .|-.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSGS- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISGS- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccch-
Confidence 44667898877776666553 211 2256789999999999999999997643222 11 0000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCCCC--CCcE
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDELA--SGSR 315 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~gs~ 315 (617)
+. .+-..+.+....-+...+..++.++++++|.++.. ..+.+++.....++ .|-.
T Consensus 218 ~F-------VemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 218 DF-------VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred hh-------hhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 00 00000000000012222344667899999988531 23444544444444 2333
Q ss_pred EEEEcCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchH
Q 037173 316 VIITTRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLA 380 (617)
Q Consensus 316 IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 380 (617)
|+..|.-++|.. .-..+..+.++..+...-.+.+.-++-...-. ...+ ...|++.+-|.-.|
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--~~Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA--EDVD-LKKIARGTPGFSGA 357 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--CcCC-HHHHhhhCCCcccc
Confidence 333344444432 11344566677666666667777655322211 1111 23377777777544
No 315
>PRK03839 putative kinase; Provisional
Probab=95.61 E-value=0.0094 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 316
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.59 E-value=0.076 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=21.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
-.+++|.|+.|.|||||++.++-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999865
No 317
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.58 E-value=0.034 Score=60.59 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=39.0
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
-+..|.+.|..+=..-.++.|.|++|+|||||+.+++.....+-+.++++.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345666667544455679999999999999999999998766656667765
No 318
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.58 E-value=0.081 Score=47.71 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
++.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.11 Score=53.72 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=28.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+.++++|+|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999987644433344444
No 320
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.064 Score=51.21 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 187 GLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
++=|.+-..+++.+.... +-+.++-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345666666666665431 124567889999999999999999999865544
No 321
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.53 E-value=0.14 Score=59.67 Aligned_cols=193 Identities=21% Similarity=0.206 Sum_probs=95.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhcc----CceEEEEechhhhc-cCCHH-HHHHHHHHHHhcCCCCC-CHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCF----EGSYFALDVREAEE-TGRIK-DLQKELLSKLLNDGNAR-NVESQLNRL 282 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~-~~~~~-~l~~~l~~~l~~~~~~~-~~~~l~~~L 282 (617)
.-+.|+|.+|.||||+.+.++-....+. +..+++..-..... .+.-. .+..-+...+....... ......+.+
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l 302 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELL 302 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHHH
Confidence 3688999999999999999987643322 22333331100001 11111 22222222222221111 222235788
Q ss_pred cCCCeEEEEeCCCCHH------hHHHHHcccCCCCCCcEEEEEcCCcccccccCcceEEEeccCChhHHHHHHH------
Q 037173 283 ARKKVLLVFDDVNHPG------QIESLIGCLDELASGSRVIITTRDKQVLENCWVNQIYRMKELVDVDAHKLFC------ 350 (617)
Q Consensus 283 ~~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~------ 350 (617)
...++++++|.++... ....+-..+ ..-+.+++|+|+|....-........+++..+.++.-.....
T Consensus 303 ~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~ 381 (824)
T COG5635 303 KTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDA 381 (824)
T ss_pred hccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999997532 112211111 113588999999976543333333445555555554443222
Q ss_pred --HhhhcCCCCC-hhHHH----HHHHHHHHccCCchHHHHHhhhhC------CCCHHHHHHHHHHH
Q 037173 351 --QCAFRGGHLD-ASYTE----VTRKAIKYAHGVPLALQVLGRHLC------GRSKEVWESAMRKL 403 (617)
Q Consensus 351 --~~~~~~~~~~-~~~~~----~~~~i~~~~~G~PLai~~~a~~L~------~~~~~~w~~~l~~l 403 (617)
...++..... ..+.. -...-.+.....|+.+.+.+..-. ....+-++.+++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~ 447 (824)
T COG5635 382 FIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDAL 447 (824)
T ss_pred HHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHH
Confidence 1111111111 00110 012223444888999988874433 23455666666654
No 322
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.51 E-value=0.013 Score=56.13 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.2
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+...+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 323
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.51 E-value=0.13 Score=51.52 Aligned_cols=53 Identities=13% Similarity=-0.033 Sum_probs=35.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
...++.|.|.+|+||||++.+++...... -..++|+. . .....++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS----~--E~~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS----L--EEPVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE----c--ccCHHHHHHHHHHHH
Confidence 34588899999999999999998886544 34566765 2 223445555554443
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.51 E-value=0.095 Score=52.74 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..++++|+|++|+||||++..++.....+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35699999999999999999999886543
No 325
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.016 Score=54.92 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=26.4
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..+.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999987655
No 326
>PRK04040 adenylate kinase; Provisional
Probab=95.48 E-value=0.013 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.+|+|+|++|+||||+++.+...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998864
No 327
>PRK06547 hypothetical protein; Provisional
Probab=95.48 E-value=0.014 Score=53.95 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=24.0
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.....+|+|.|++|+||||+|..+++.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999986
No 328
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.46 E-value=0.0052 Score=59.94 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=46.6
Q ss_pred hhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCcccccc
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFRYIY 616 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~~L~ 616 (617)
+.+..-.+.+|+|+++.+.+. .. +++ .|.+|..|+|+++.+.++ --+|.|..+|+|.++.|+.| .|..+||
T Consensus 300 DESvKL~Pkir~L~lS~N~i~---~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLY 374 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIR---TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLY 374 (490)
T ss_pred hhhhhhccceeEEecccccee---ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhh
Confidence 344555677778887776544 22 224 666777778877777777 44777777888877777766 3555554
No 329
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.45 E-value=0.012 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.0
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999764
No 330
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.44 E-value=0.074 Score=54.76 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh--hc----cCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS--RC----FEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~----f~~~~~~~ 244 (617)
.|.++|..+=....++-|+|.+|+|||+|+..++-... .. -..++|+.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 44455543334467888999999999999999875422 11 13567877
No 331
>PRK00625 shikimate kinase; Provisional
Probab=95.43 E-value=0.011 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=21.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.|.|+|++|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998753
No 332
>PRK14527 adenylate kinase; Provisional
Probab=95.42 E-value=0.024 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|.|.|++|+||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 333
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.42 E-value=0.012 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999999885
No 334
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.42 E-value=0.0041 Score=69.99 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=62.5
Q ss_pred eEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeEEe
Q 037173 523 IKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVSLK 599 (617)
Q Consensus 523 ~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~ 599 (617)
++++.+.+.... ...++......+++||.|.+.|....+ .++..-+ .+.+|+.|++++|+|+.| |++|+|||+|.
T Consensus 124 L~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchh-hccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 444444443332 455677778889999999998875542 2333444 888999999999999999 99999999999
Q ss_pred cCCCCccc
Q 037173 600 CLSAKLNN 607 (617)
Q Consensus 600 l~~t~i~~ 607 (617)
+++-.++.
T Consensus 202 mrnLe~e~ 209 (699)
T KOG3665|consen 202 MRNLEFES 209 (699)
T ss_pred ccCCCCCc
Confidence 99876654
No 335
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.094 Score=49.65 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=55.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhc---c-CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCC
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRC---F-EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRL-ARK 285 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~---f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k 285 (617)
-..|.|++|+|||||.+.+++-+... | +..+-+.+-+.--......--+..+...+.-.++-...+-+.... ...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 36788999999999999999875443 3 233333322110000000000111111111111111112222222 346
Q ss_pred CeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 286 KVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 286 ~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
+=++|.|.+-..++...+...+ ..|.+++.|..-
T Consensus 219 PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 219 PEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred CcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 7799999998776666665554 468787777543
No 336
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.40 E-value=0.057 Score=56.10 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=60.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHcCCC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND-GNARNVESQLNRLARKK 286 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~l~~~L~~k~ 286 (617)
.++=+=|||..|.|||.|+-.+|+.+...-..++-+ .....++-+.+... +....+..+.+.+.++.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF------------h~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~ 128 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF------------HEFMLDVHSRLHQLRGQDDPLPQVADELAKES 128 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc------------cHHHHHHHHHHHHHhCCCccHHHHHHHHHhcC
Confidence 456788999999999999999999754321111111 12222222222222 22335677778888888
Q ss_pred eEEEEeCCC--CH---HhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 287 VLLVFDDVN--HP---GQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 287 ~LlVLDdv~--~~---~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.||.||.+. +. --+..++..+. ..|..+|.||..
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~ 167 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNR 167 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCC
Confidence 899999873 33 23444554443 456666666543
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.38 E-value=0.17 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.0
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
++.++|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999886655
No 338
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.38 E-value=0.02 Score=53.39 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=22.8
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999886543
No 339
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.4 Score=52.66 Aligned_cols=173 Identities=18% Similarity=0.161 Sum_probs=90.7
Q ss_pred CcccchhhHHHHHHHhhhcC-----------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCH
Q 037173 187 GLVGVAWRIKEIESLLCIRS-----------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRI 255 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (617)
++-|..+..+.+.+.+.-+. .-..-|.++|++|.|||-||.+++....- -|+. + .+.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-----~fis----v---KGP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-----RFIS----V---KGP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-----eEEE----e---cCH
Confidence 45566666666666664222 11345889999999999999999875321 2333 1 111
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------HhHHHHHcccCC--CCCCcEEEE-
Q 037173 256 KDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------GQIESLIGCLDE--LASGSRVII- 318 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~--~~~gs~Ilv- 318 (617)
+++.+..+. .+.++..+.++- ..++++|.+|..++. ...++++..+.. .-.|.-|+.
T Consensus 736 -----ElL~KyIGa-SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 736 -----ELLSKYIGA-SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred -----HHHHHHhcc-cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe
Confidence 222222211 111344444443 468999999998642 235556555542 124555554
Q ss_pred EcCCccccccc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchH
Q 037173 319 TTRDKQVLENC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLA 380 (617)
Q Consensus 319 TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 380 (617)
|||..-+-+.. .-++.+.-+.-++.+-.++|....-.... ...-..+.++.+..|..-|
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~---~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK---DTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC---ccccchHHHhhhcCCCchh
Confidence 55654332221 12233333444566667777665521111 1112255677777776543
No 340
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.32 E-value=0.088 Score=48.42 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=60.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEe---chhhhccCCH--HHHHHHHHHHHhcCCCCCC-----HHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALD---VREAEETGRI--KDLQKELLSKLLNDGNARN-----VESQ 278 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~-----~~~l 278 (617)
-.+++|.|+.|.|||||++.++-.... ..+.+++.. +.-+.+...+ ..+.+.+... .....+ .-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 358999999999999999999875322 123233221 0001111111 1222222110 111111 1233
Q ss_pred HHHHcCCCeEEEEeCCC---CHHhHHHHHcccCCCCCCcEEEEEcCCcccccccCcceEEEe
Q 037173 279 LNRLARKKVLLVFDDVN---HPGQIESLIGCLDELASGSRVIITTRDKQVLENCWVNQIYRM 337 (617)
Q Consensus 279 ~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l 337 (617)
...+-.++=++++|+-. +....+.+...+... +..||++|.+...... .++++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 44556777889999874 333333333333322 3567777777654432 3444444
No 341
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.28 E-value=0.0042 Score=69.37 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=35.0
Q ss_pred ceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCccc
Q 037173 550 LRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 550 LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~ 613 (617)
|++||++++... .+|..| .+.+|+.|+++.+.|+++ ++++++|++|+|.++.+..||.++.
T Consensus 47 L~~l~lsnn~~~---~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS---SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS 111 (1081)
T ss_pred eEEeeccccccc---cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH
Confidence 666666665443 555555 555666666665555555 5555566666666555555554443
No 342
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.27 E-value=0.042 Score=51.51 Aligned_cols=33 Identities=24% Similarity=0.062 Sum_probs=27.1
Q ss_pred EEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+.|.|++|+|||+||.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655555677765
No 343
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.26 E-value=0.18 Score=44.85 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHHhcceEEEEecCCccCChhhHHHHHHHHHHhhhCCCEEEEEEeec
Q 037173 60 RSLLDTIEASSISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYRV 111 (617)
Q Consensus 60 ~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~~~~~vipi~~~v 111 (617)
.++.++|++++.+|+|++...-.+.+. .++...+.... .+..++.|+=+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~ 52 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKA 52 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEech
Confidence 578899999999999998765444442 25555554321 234455555443
No 344
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.082 Score=48.88 Aligned_cols=123 Identities=19% Similarity=0.281 Sum_probs=60.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCC---CC------CC-----
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDG---NA------RN----- 274 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~------~~----- 274 (617)
-.+++|.|+.|.|||||.+.++-... ...+.+++.... ... .........+ .-+.... .. .+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 35899999999999999999987532 234444443210 000 0000000000 0000000 00 00
Q ss_pred HHHHHHHHcCCCeEEEEeCCC---CHHhHHHHHcccCCCCCCcEEEEEcCCcccccccCcceEEEe
Q 037173 275 VESQLNRLARKKVLLVFDDVN---HPGQIESLIGCLDELASGSRVIITTRDKQVLENCWVNQIYRM 337 (617)
Q Consensus 275 ~~~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l 337 (617)
.-.+...+..++-+++||+-. +....+.+...+.....+..||++|.+...... .++++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 022334456678899999984 333333333333222235678888887665543 3444444
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.25 E-value=0.015 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998874
No 346
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.25 E-value=0.012 Score=65.60 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=54.2
Q ss_pred cccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEEechhhhccCCHHHHHH
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
+..-+.++|.+..++.|...+... +.+.++|++|+||||+|+.+++.+. ..++..+|..+ .......+++
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~ 97 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIR 97 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHH
Confidence 344567899999888888877533 3688999999999999999998753 33566777763 3345555555
Q ss_pred HHHHHH
Q 037173 261 ELLSKL 266 (617)
Q Consensus 261 ~l~~~l 266 (617)
.+....
T Consensus 98 ~v~~~~ 103 (637)
T PRK13765 98 TVPAGK 103 (637)
T ss_pred HHHHhc
Confidence 555443
No 347
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.25 E-value=0.05 Score=62.39 Aligned_cols=179 Identities=16% Similarity=0.099 Sum_probs=83.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH-hhhccCceEEEEe--------chhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK-ISRCFEGSYFALD--------VREAEETGRIKDLQKELLSKLLNDGNARNVESQL 279 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~~--------~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~ 279 (617)
.++++|+|+.|.|||||.+.+.-. +..+- ++++.. ........+..+-..+-++.+.. ....+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~--G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~-----~m~~~~ 394 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQS--GIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSG-----HMKNIS 394 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHh--CCCccCCccccccchhheeeecChHhHHhhhhhHHHH-----HHHHHH
Confidence 478999999999999999998765 11111 111110 00000000000000000000000 112223
Q ss_pred HHHc--CCCeEEEEeCCC---CHHhHHH----HHcccCCCCCCcEEEEEcCCcccccccCc-c--eEEEeccCChhHHHH
Q 037173 280 NRLA--RKKVLLVFDDVN---HPGQIES----LIGCLDELASGSRVIITTRDKQVLENCWV-N--QIYRMKELVDVDAHK 347 (617)
Q Consensus 280 ~~L~--~k~~LlVLDdv~---~~~~~~~----l~~~l~~~~~gs~IlvTTR~~~v~~~~~~-~--~~~~l~~L~~~ea~~ 347 (617)
..+. ..+-|+++|..- ++..-.. +...+. ..|+.+|+||-...+...... . ....+. ++.+ ...
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~ 470 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS 470 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc
Confidence 3332 478999999984 3322222 222322 357889999998765322111 1 111111 1111 110
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHHHHc
Q 037173 348 LFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMRKLE 404 (617)
Q Consensus 348 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~~l~ 404 (617)
+..+. ....+. ...|-.|++++ |+|-.+..-|..+......++..++..+.
T Consensus 471 -p~Ykl-~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 471 -PTYKL-LKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -eEEEE-CCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111 111111 23466676665 78888887777776555555555555543
No 348
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.23 E-value=0.03 Score=51.97 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=24.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..+++|+|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999998654
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.20 E-value=0.06 Score=50.05 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=53.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEe--chhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCe
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALD--VREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKV 287 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~ 287 (617)
.+++|.|+.|.|||||++.++--.. .....+++.. +.-..+...+..-+ ...-.+...+..++-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~LSgGq-------------~qrv~laral~~~p~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYIDLSGGE-------------LQRVAIAAALLRNAT 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCCCCHHH-------------HHHHHHHHHHhcCCC
Confidence 4899999999999999998886432 2233344321 00011111100000 001233344566778
Q ss_pred EEEEeCCC---CHHhHHHHHcccCCC--CCCcEEEEEcCCccccc
Q 037173 288 LLVFDDVN---HPGQIESLIGCLDEL--ASGSRVIITTRDKQVLE 327 (617)
Q Consensus 288 LlVLDdv~---~~~~~~~l~~~l~~~--~~gs~IlvTTR~~~v~~ 327 (617)
++++|+-. +....+.+...+... ..+..||++|.+.....
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999883 333333332222211 12356777777654433
No 350
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.18 E-value=0.025 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEeccCCChhhHHHHHHHHHhhh
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 351
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.18 E-value=0.011 Score=31.74 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=10.5
Q ss_pred CCeeEEecCCCCccccC
Q 037173 593 ENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 593 ~~L~~L~l~~t~i~~Lp 609 (617)
.+|++|+|++|++++||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36888888888888887
No 352
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.17 E-value=0.031 Score=51.31 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=56.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHcCCCeE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNAR-NVESQLNRLARKKVL 288 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~l~~~L~~k~~L 288 (617)
.+++|.|+.|.|||||.+.++-... ...+.+++.... ... ....+....-...+..-.... ..-.+...+-.++-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF-ASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc-CCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 4899999999999999999886432 234445544210 110 111111000000000000000 012333445667889
Q ss_pred EEEeCCC---CHHhHHHHHcccCCC-CCCcEEEEEcCCccc
Q 037173 289 LVFDDVN---HPGQIESLIGCLDEL-ASGSRVIITTRDKQV 325 (617)
Q Consensus 289 lVLDdv~---~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~v 325 (617)
+++|+.. +....+.+...+... ..+..||++|.+...
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999984 333333333333221 246678888887653
No 353
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.16 E-value=0.04 Score=54.27 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
.++...+....++..+|+|+|.||+|||||...+..++..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3455555545566789999999999999999999988765543
No 354
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.16 E-value=0.034 Score=55.27 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=29.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...++.|.|++|+|||++|.+++......-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999999999999999887544445677776
No 355
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.15 E-value=0.067 Score=49.93 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=59.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHH------HHHHHHHHhcC---CCC---CCH-
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDL------QKELLSKLLND---GNA---RNV- 275 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~l~~~l~~~---~~~---~~~- 275 (617)
-.+++|.|+.|.|||||++.++-... ...+.+++.... .. ....... ..+++..++-. ... .+-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35899999999999999999986532 234455553210 10 0011111 11123332211 000 111
Q ss_pred ----HHHHHHHcCCCeEEEEeCCC---CHHhHHHHHcccCCC-CC-CcEEEEEcCCcccc
Q 037173 276 ----ESQLNRLARKKVLLVFDDVN---HPGQIESLIGCLDEL-AS-GSRVIITTRDKQVL 326 (617)
Q Consensus 276 ----~~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~-~~-gs~IlvTTR~~~v~ 326 (617)
-.+...+...+-++++|+.. +....+.+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23344566788899999984 333333333333221 22 66788888775543
No 356
>PRK14529 adenylate kinase; Provisional
Probab=95.13 E-value=0.072 Score=51.31 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=47.4
Q ss_pred EEEeccCCChhhHHHHHHHHHhhhcc-CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCC-CeEE
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISRCF-EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARK-KVLL 289 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k-~~Ll 289 (617)
|.|.|++|+||||+|+.++..+.-.+ ...-.+.. .+.....+....++++..-..-.++.....+.+++.+. .-=+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 67899999999999999998753211 11111110 01111222233333332211112222346666777432 3458
Q ss_pred EEeCCC-CHHhHHHHH
Q 037173 290 VFDDVN-HPGQIESLI 304 (617)
Q Consensus 290 VLDdv~-~~~~~~~l~ 304 (617)
|||+.- +.++.+.+.
T Consensus 81 iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 81 LLDGFPRNKVQAEKLW 96 (223)
T ss_pred EEeCCCCCHHHHHHHH
Confidence 999994 555555543
No 357
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.13 E-value=0.24 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999998744
No 358
>PRK13947 shikimate kinase; Provisional
Probab=95.13 E-value=0.015 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 359
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.11 E-value=0.047 Score=54.08 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=32.2
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh--hc----cCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS--RC----FEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~----f~~~~~~~ 244 (617)
.|.++|..+=....+.=|+|++|+|||+|+..++-... .. -..++|+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 55566642223345888999999999999999886632 11 12367776
No 360
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.09 E-value=0.016 Score=54.40 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=49.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHh-cC-----CCCCCH-HHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLL-ND-----GNARNV-ESQLNR 281 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~-----~~~~~~-~~l~~~ 281 (617)
...++|.|+.|.|||||++.+...+... ...+.+.+..+..... .... ++. .. ....+. +.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3589999999999999999988765432 2223222111110000 0000 000 00 011233 455566
Q ss_pred HcCCCeEEEEeCCCCHHhHHHHH
Q 037173 282 LARKKVLLVFDDVNHPGQIESLI 304 (617)
Q Consensus 282 L~~k~~LlVLDdv~~~~~~~~l~ 304 (617)
++..+=.++++.+.+.+.+..+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 78888899999998887665443
No 361
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.09 E-value=0.077 Score=58.38 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=37.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..+.++|....+.++.+.+..-...-..|.|+|..|+||+.+|+.+.+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 4467999999888888776532222345789999999999999997654
No 362
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.06 E-value=0.031 Score=63.74 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=40.8
Q ss_pred CceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc-ccccCCeeEEecCCCCccccCCc
Q 037173 549 KLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL-NIHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 549 ~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L-i~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
+|+.|+|++|.+. .+|..+ +.+|++|+++++.+..+ ..-+.+|++|+|++|+++.+|..
T Consensus 242 ~L~~L~Ls~N~L~---~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 242 TIQEMELSINRIT---ELPERL-PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred cccEEECcCCccC---cCChhH-hCCCCEEECcCCccCccccccCCCCcEEECCCCccccCccc
Confidence 5777777777544 566554 34678888888887777 32335788888888888877654
No 363
>PTZ00035 Rad51 protein; Provisional
Probab=95.05 E-value=0.13 Score=53.12 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..|.++|..+=....++.|+|.+|+|||+|+..++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 44555665333456799999999999999999887653
No 364
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.04 E-value=0.019 Score=58.17 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=50.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccC-ceE-EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCCC
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFE-GSY-FALDVREAEETGRIKDLQKELLSKLLNDGNARNV-ESQLNRLARKK 286 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~l~~~L~~k~ 286 (617)
+.+.|+|..|+||||++..+...+....+ ..+ -+.+..+...... .. -.+.......+. +.++..|+..+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~------~~-v~~~~~~~~~~~~~~l~~aLR~~p 205 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAP------NV-VQLRTSDDAISMTRLLKATLRLRP 205 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCC------CE-EEEEecCCCCCHHHHHHHHhcCCC
Confidence 46779999999999999999987654321 222 2222111110000 00 000000111133 56667788888
Q ss_pred eEEEEeCCCCHHhHHHHH
Q 037173 287 VLLVFDDVNHPGQIESLI 304 (617)
Q Consensus 287 ~LlVLDdv~~~~~~~~l~ 304 (617)
=.||+..+.+.+.++.+.
T Consensus 206 D~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 206 DRIIVGEVRGGEALDLLK 223 (299)
T ss_pred CEEEEeccCCHHHHHHHH
Confidence 899999998887766543
No 365
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.04 E-value=0.021 Score=59.51 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=36.8
Q ss_pred CceEEEEecccCccccccCCCCCCCCceEEEecCC-CCcccccccCCeeEEecCCC---CccccCCcccccc
Q 037173 549 KLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQY-PLKTLNIHAENLVSLKCLSA---KLNNFGMMFRYIY 616 (617)
Q Consensus 549 ~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~-~i~~Li~~l~~L~~L~l~~t---~i~~Lp~~i~~L~ 616 (617)
+|+.|.+.+|. ....+|..+ +.+|++|++++| .+..| +.+|++|+|.++ .+..||.+++.|.
T Consensus 73 sLtsL~Lsnc~--nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 73 ELTEITIENCN--NLTTLPGSI-PEGLEKLTVCHCPEISGL---PESVRSLEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred CCcEEEccCCC--CcccCCchh-hhhhhheEccCccccccc---ccccceEEeCCCCCcccccCcchHhhee
Confidence 47777776654 223445433 456777777776 45544 334566666544 3677777777765
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.019 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=21.7
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+|.|.|++|+||||+|+.++++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998753
No 367
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.03 E-value=0.12 Score=47.56 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHHHHcCCCeEEEEeCC----CCHHhHHHHHcccC-CCCCCcEEEEEcCCccccccc
Q 037173 277 SQLNRLARKKVLLVFDDV----NHPGQIESLIGCLD-ELASGSRVIITTRDKQVLENC 329 (617)
Q Consensus 277 ~l~~~L~~k~~LlVLDdv----~~~~~~~~l~~~l~-~~~~gs~IlvTTR~~~v~~~~ 329 (617)
.+...+-+++-+|+-|.- +....|+ ++..+. -+..|..||++|-+..+...+
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 344456688999999965 3333333 222222 125799999999998776655
No 368
>PRK14528 adenylate kinase; Provisional
Probab=95.02 E-value=0.1 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+.|.|.|++|+||||+|+.++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998764
No 369
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.01 E-value=0.045 Score=56.88 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=53.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCc---eEEEEechhhhccCCHHHHHH--HHHHHHhcCCCCCC-HHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEG---SYFALDVREAEETGRIKDLQK--ELLSKLLNDGNARN-VESQLNRL 282 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~l~~--~l~~~l~~~~~~~~-~~~l~~~L 282 (617)
...|.|+|+.|+||||++..+...+....+. .+.+.+.-+ ........ ....+........+ ...++..|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aL 209 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIETISASVCQSEIPRHLNNFAAGVRNAL 209 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----EeccccccccceeeeeeccccccCHHHHHHHHh
Confidence 3689999999999999999998876543332 222221111 11111100 00001000001112 26677788
Q ss_pred cCCCeEEEEeCCCCHHhHHHHHcc
Q 037173 283 ARKKVLLVFDDVNHPGQIESLIGC 306 (617)
Q Consensus 283 ~~k~~LlVLDdv~~~~~~~~l~~~ 306 (617)
+..+-.+++..+.+.+.....+..
T Consensus 210 R~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 210 RRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred ccCCCEEeeeeeCCHHHHHHHHHH
Confidence 999999999999888777644443
No 370
>PF13245 AAA_19: Part of AAA domain
Probab=95.00 E-value=0.051 Score=42.65 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=18.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++.|.|++|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999555555544
No 371
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.98 E-value=0.02 Score=54.83 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.1
Q ss_pred hhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 202 LCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 202 L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
+..+....+.++|+|++|+|||||+..+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334556789999999999999999998754
No 372
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.98 E-value=0.04 Score=52.34 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=28.7
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
....+++|+|++|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34579999999999999999999987654333345543
No 373
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.97 E-value=0.024 Score=53.10 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=29.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.+++.|+|+.|+|||||+..+.......|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368999999999999999999998877786444443
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.96 E-value=0.037 Score=53.82 Aligned_cols=47 Identities=26% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEE
Q 037173 198 IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFAL 244 (617)
Q Consensus 198 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (617)
|.++|..+=....++.|.|.+|+|||+|+.+++.....+ -+.++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 444553232345699999999999999999998775555 56677776
No 375
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.96 E-value=0.042 Score=48.94 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=26.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (617)
++|.|+|..|+|||||++.+.+.+..+ +...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999997644 44444444
No 376
>PLN03150 hypothetical protein; Provisional
Probab=94.95 E-value=0.019 Score=64.60 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=54.6
Q ss_pred CceEEEEecccCccccccCCCC-CCCCceEEEecCCCCc-cc---ccccCCeeEEecCCCCcc-ccCCccccc
Q 037173 549 KLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLK-TL---NIHAENLVSLKCLSAKLN-NFGMMFRYI 615 (617)
Q Consensus 549 ~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~-~L---i~~l~~L~~L~l~~t~i~-~Lp~~i~~L 615 (617)
.++.|+|.++.+. ..+|..+ .+.+|++|+|+++.+. .+ ++.+.+|++|||++|++. .+|+.+.+|
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 4788999888653 4788888 9999999999999987 45 889999999999999987 688876654
No 377
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.94 E-value=0.017 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEeccCCChhhHHHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999886
No 378
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.92 E-value=0.66 Score=49.69 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=45.5
Q ss_pred cccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 188 LVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
..|...-...|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|++ -.-...++...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 3444444555555553 333446889999999999999999997754 3333455554 2335566666665544
No 379
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.92 E-value=0.091 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=21.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+.+.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999998853
No 380
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.92 E-value=0.04 Score=56.51 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.-++.|+|.+|+||||+.+.+.-.
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHH
Confidence 358999999999999999998865
No 381
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.36 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.++++++|+.|+||||++..++....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998753
No 382
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.90 E-value=0.047 Score=55.55 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=33.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
.+++...|-||+||||+|.+.+-........+.-+. ..+..++.+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhh
Confidence 478999999999999999998888776665455554 33344444433
No 383
>PRK05973 replicative DNA helicase; Provisional
Probab=94.89 E-value=0.087 Score=51.19 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=29.1
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...++.|.|.+|+|||++|.+++.....+-..++++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458999999999999999999887655545566655
No 384
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.88 E-value=0.022 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988743
No 385
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.87 E-value=0.062 Score=55.00 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..+.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443234567899999999999999999998886654
No 386
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.86 E-value=0.019 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999874
No 387
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.091 Score=51.35 Aligned_cols=52 Identities=29% Similarity=0.333 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 186 KGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
.+.=|.+..+++|.+..... -..++-|.++|.+|.|||-||++|+|+...-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 34567888888888766421 12356788999999999999999999855444
No 388
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.85 E-value=0.034 Score=58.04 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHhhhc------------CCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 186 KGLVGVAWRIKEIESLLCIR------------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..++|.++..+.+.-.+... ....+-|.++|++|+|||++|+.++......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45778877777775544321 1124678899999999999999999986443
No 389
>PRK04328 hypothetical protein; Provisional
Probab=94.85 E-value=0.085 Score=52.07 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=35.1
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|.++|..+=....++.|.|.+|+|||+||.++.......-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 444555433334678999999999999999998877545556677776
No 390
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.85 E-value=0.057 Score=52.58 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=34.2
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|.+.|..+=.....+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444444323334579999999999999999998876444455677776
No 391
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.85 E-value=0.13 Score=51.09 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=63.0
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC--CCCC-------CHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND--GNAR-------NVESQ 278 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~-------~~~~l 278 (617)
+..-++|.|+.|.|||||.+.++..+... ...+++... .+.......++...+ ..+... .... ....+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 35689999999999999999999765432 333443210 011001112222111 111110 0000 11233
Q ss_pred HHHHc-CCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCccc
Q 037173 279 LNRLA-RKKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQV 325 (617)
Q Consensus 279 ~~~L~-~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v 325 (617)
...+. ..+=++++|.+-..+.+..+...+. .|..+|+||-+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 33333 5788999999987777776666553 57789999986544
No 392
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.84 E-value=0.056 Score=52.42 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=24.0
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+.+...+... .+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 444555555321 278899999999998888777775
No 393
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.84 E-value=0.018 Score=57.62 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=66.9
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEE-EechhhhccCCHHHHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA-LDVREAEETGRIKDLQKELLS 264 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 264 (617)
+.+.-.....+.+.++|...-...+.+.|.|..|+||||++..+...+... ...+.. .+..+. .+.. ....
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~----~l~~---~~~~ 175 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPEL----RLPG---PNQI 175 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S------SC---SSEE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccce----eecc---cceE
Confidence 344444444566666665332345789999999999999999999876554 233332 211111 0000 0000
Q ss_pred HHhcCCCCCCH-HHHHHHHcCCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEE-EEEcC
Q 037173 265 KLLNDGNARNV-ESQLNRLARKKVLLVFDDVNHPGQIESLIGCLDELASGSRV-IITTR 321 (617)
Q Consensus 265 ~l~~~~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~I-lvTTR 321 (617)
.+.......+. +.+...|+..+=.++++.+.+.+.+..+... ..|..+ +-|..
T Consensus 176 ~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 176 QIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp EEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred EEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 00000122233 5566678888889999999888777664333 356666 44444
No 394
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.84 E-value=0.019 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|.|++|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 395
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.83 E-value=0.02 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|.|.|++|+||||+|+.++.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 396
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.022 Score=51.48 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEeccCCChhhHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVF 230 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~ 230 (617)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999888
No 397
>PRK05439 pantothenate kinase; Provisional
Probab=94.79 E-value=0.042 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=25.4
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....-+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345779999999999999999999886543
No 398
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.78 E-value=0.095 Score=53.96 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=36.0
Q ss_pred hhhHHHHHHHhhhcC-CCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 192 AWRIKEIESLLCIRS-AGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 192 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+.-.+.|.+.+...+ ....+|+|.|.-|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776443 567899999999999999999999987766
No 399
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.024 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 35899999999999999999999865
No 400
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.76 E-value=0.042 Score=55.87 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=27.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+++.+.|-||+||||+|...+-...++-..+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 57899999999999999999888666544455544
No 401
>PRK06217 hypothetical protein; Validated
Probab=94.76 E-value=0.023 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999874
No 402
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.75 E-value=0.022 Score=55.10 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.8
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 403
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.75 E-value=0.055 Score=54.00 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceE
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSY 241 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 241 (617)
..+..++.|.|.+|+|||||+..+...+.......+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 356789999999999999999999998766554333
No 404
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.75 E-value=0.05 Score=49.36 Aligned_cols=33 Identities=30% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCc
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG 239 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (617)
.+..+|-++|++|.||||+|.++...+......
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~ 53 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYH 53 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCe
Confidence 345689999999999999999999987665443
No 405
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.74 E-value=0.062 Score=54.06 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=42.7
Q ss_pred ccCCCcccchhhHHH---HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 183 SENKGLVGVAWRIKE---IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
...+.+||..+..+. +.+++.++.-.-+.|.|+|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 346789998766553 45666555555789999999999999999999998765433
No 406
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.74 E-value=0.044 Score=57.30 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=38.2
Q ss_pred CCCcccchhhHHHHHHHhhhc------------CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 185 NKGLVGVAWRIKEIESLLCIR------------SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
...++|.+...+.+..++... ....+.+.++|++|+|||+||+.++..+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345888888888887766420 011367899999999999999999987543
No 407
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.71 E-value=0.078 Score=51.80 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=63.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEec--hhhhccCCHHHHHHHHHHHHhcCCC-------CC-----C
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDV--REAEETGRIKDLQKELLSKLLNDGN-------AR-----N 274 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~-------~~-----~ 274 (617)
..+++|+|.+|.|||||++.+..-.... .+.+++..- ...+ .....+...+++..++.... .. .
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 3589999999999999999998754433 334444311 1111 12233334445555442210 00 0
Q ss_pred HHHHHHHHcCCCeEEEEeCCCCH------HhHHHHHcccCCCCCCcEEEEEcCCccccccc
Q 037173 275 VESQLNRLARKKVLLVFDDVNHP------GQIESLIGCLDELASGSRVIITTRDKQVLENC 329 (617)
Q Consensus 275 ~~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~ 329 (617)
--.+...|.-++-++|.|..-+. .+.-.++..+.. ..|...++.|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 13445567789999999987432 222333333322 2355566666665555443
No 408
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.71 E-value=0.038 Score=53.44 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG 239 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (617)
....|.++||+|+||||..+.++..+...+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 35678889999999999999999987776654
No 409
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.70 E-value=0.049 Score=55.54 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=38.2
Q ss_pred cCCCcccchhhHHHH---HHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 184 ENKGLVGVAWRIKEI---ESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
....+||..+..+.. .+++..+.-.-+.+.|.|++|.|||+||..+++.+....+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~P 79 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVP 79 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCC
Confidence 356899988766644 4555444434688999999999999999999999876555
No 410
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.68 E-value=0.02 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.++|+|+.|+|||||++.+......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3789999999999999999976433
No 411
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.67 E-value=0.15 Score=43.87 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=32.9
Q ss_pred CcccchhhHHHHHH----Hhhh-cCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 187 GLVGVAWRIKEIES----LLCI-RSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 187 ~~vGR~~~~~~l~~----~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.++|..-..+.+.+ .+.. .+..+-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666544444444 4432 3345778899999999999999999887
No 412
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.66 E-value=0.043 Score=55.81 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred CCCcccchhhHHHHHHHhhhc----CCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 185 NKGLVGVAWRIKEIESLLCIR----SAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.+.|+|.++.++++++.+... ...-+++.+.|+.|.||||||..+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 457999999999999988632 2347899999999999999999998876543
No 413
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.63 E-value=0.1 Score=56.90 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..++|....+.++...+..-......|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899999888888777543344456889999999999999998875
No 414
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.61 E-value=0.042 Score=50.58 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..++++|+|..|+|||||+..+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988654
No 415
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.59 E-value=0.13 Score=52.51 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..|..+|..+-....++.|+|.+|+|||+|+..++..
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 4455556433345679999999999999999998864
No 416
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.59 E-value=0.081 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.443 Sum_probs=22.7
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 417
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.58 E-value=0.074 Score=55.43 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=53.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccC-ceEEE-EechhhhccCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCCC
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFE-GSYFA-LDVREAEETGRIKDLQKELLSKLLNDGNARNV-ESQLNRLARKK 286 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~l~~~L~~k~ 286 (617)
..+.|+|+.|+||||++..+.+.+....+ ..+.. .+..+..- .....+....-.+++ .+..+. ..++..|+..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~~~q~evg--~~~~~~~~~l~~aLR~~P 226 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLPPAQSQIG--RDVDSFANGIRLALRRAP 226 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeecccccccC--CCccCHHHHHHHhhccCC
Confidence 47889999999999999999887654332 23332 21111100 000000000000111 111123 56777889999
Q ss_pred eEEEEeCCCCHHhHHHHHcc
Q 037173 287 VLLVFDDVNHPGQIESLIGC 306 (617)
Q Consensus 287 ~LlVLDdv~~~~~~~~l~~~ 306 (617)
=.|+++.+.+.+.++.....
T Consensus 227 D~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 227 KIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred CEEeeCCCCCHHHHHHHHHH
Confidence 99999999988877754443
No 418
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.58 E-value=0.033 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999873
No 419
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.57 E-value=0.049 Score=55.65 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=50.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCC-CCCCH-HHHHHHHcCCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDG-NARNV-ESQLNRLARKK 286 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~-~~l~~~L~~k~ 286 (617)
...++|+|..|.|||||++.+...+.... ..+.+.+..+...... ..+ .+...-...+ ...+. +.+...|+..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~-~~~--~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHP-NYV--HLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCC-CEE--EEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 35899999999999999999887653322 2333332222111100 000 0000000001 11233 45556778888
Q ss_pred eEEEEeCCCCHHhHHHH
Q 037173 287 VLLVFDDVNHPGQIESL 303 (617)
Q Consensus 287 ~LlVLDdv~~~~~~~~l 303 (617)
=.+++|.+...+.++.+
T Consensus 220 d~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 220 DRIILGELRGDEAFDFI 236 (308)
T ss_pred CeEEEeccCCHHHHHHH
Confidence 89999999887666543
No 420
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.57 E-value=0.077 Score=51.67 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=27.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...++.|.|.+|+||||||.+++.....+-..++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3459999999999999999888776533334456655
No 421
>PHA02244 ATPase-like protein
Probab=94.56 E-value=0.05 Score=55.91 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=32.3
Q ss_pred cCCCcccchhhHHH----HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 184 ENKGLVGVAWRIKE----IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 184 ~~~~~vGR~~~~~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
....++|....... +..++.. + ..|.|+|++|+|||+||+.+++...
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~---~-~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA---N-IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc---C-CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567776655543 3334432 2 2477899999999999999998753
No 422
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.56 E-value=0.12 Score=59.62 Aligned_cols=176 Identities=17% Similarity=0.183 Sum_probs=83.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHH-hhhccCceEEEEec------------hhhhccCCHHHHHHHHHHHHhcCCCCCC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNK-ISRCFEGSYFALDV------------REAEETGRIKDLQKELLSKLLNDGNARN 274 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~~~------------~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 274 (617)
+.+++.|+|+.+.||||+.+.+.-- +-. ..++++..- .......++..-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma--q~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA--KSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH--HhCCCcccCCCccccccceEEEecCCccchhhchhHHHHH---------
Confidence 4578999999999999999988653 111 111111100 0011111111111111111
Q ss_pred HHHHHHHHc--CCCeEEEEeCCC---CHHhHHH----HHcccCCCCCCcEEEEEcCCcccccccCcc---eEEEeccCCh
Q 037173 275 VESQLNRLA--RKKVLLVFDDVN---HPGQIES----LIGCLDELASGSRVIITTRDKQVLENCWVN---QIYRMKELVD 342 (617)
Q Consensus 275 ~~~l~~~L~--~k~~LlVLDdv~---~~~~~~~----l~~~l~~~~~gs~IlvTTR~~~v~~~~~~~---~~~~l~~L~~ 342 (617)
...+...+. ..+-|+++|..- ++..-.. +...+. ..|+.+|+||....+....... ....+. ++.
T Consensus 395 m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~ 471 (782)
T PRK00409 395 MTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE 471 (782)
T ss_pred HHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec
Confidence 122222222 477899999984 2322222 222222 3478999999987654432111 111111 111
Q ss_pred hHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHHHHc
Q 037173 343 VDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMRKLE 404 (617)
Q Consensus 343 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~~l~ 404 (617)
+ ... ..+.+....+. ..-|-.|++++ |+|-.+..-|..+..........++..+.
T Consensus 472 ~-~l~--~~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 472 E-TLR--PTYRLLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred C-cCc--EEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 111 01111111111 23356666666 78888887777776555555555555543
No 423
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.53 E-value=0.021 Score=55.05 Aligned_cols=67 Identities=24% Similarity=0.226 Sum_probs=52.8
Q ss_pred hhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-----ccccCCeeEEecCCCCcccc
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l~~L~~L~l~~t~i~~L 608 (617)
..|.+|++|+.|+++.+...-...++-.. .+.+|++|+|+++.|+-+ .-.|+||.+||+.+|...++
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcccc
Confidence 46778999999999988333334555555 568999999999998866 66889999999999987764
No 424
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.53 E-value=0.028 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEeccCCChhhHHHHHHHHHh
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (617)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999875
No 425
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.49 E-value=0.2 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=19.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++.++|+.|+||||-...++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999996555555553
No 426
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.48 E-value=0.094 Score=49.54 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.4
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988654
No 427
>PRK13949 shikimate kinase; Provisional
Probab=94.46 E-value=0.029 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
-|.|+|++|+||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998753
No 428
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.84 Score=44.07 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=34.9
Q ss_pred CCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 186 KGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.++=|.++.+++|.+.+-. +-..++-|..+|++|.|||-+|++.+.+...
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 3455667777776665421 1123567889999999999999999887443
No 429
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.46 E-value=0.058 Score=51.71 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=47.4
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh-ccCCHHHHHHHHHHHHhc-------CCCCCC-H-----
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE-ETGRIKDLQKELLSKLLN-------DGNARN-V----- 275 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~~~l~~~l~~-------~~~~~~-~----- 275 (617)
+-++|.|.+|+|||+|+..+++.... +..+++. +. ....+.++.+++...-.. ...+.. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 46889999999999999999988642 2234443 22 234455555555433110 011111 1
Q ss_pred ----HHHHHHH--cCCCeEEEEeCCC
Q 037173 276 ----ESQLNRL--ARKKVLLVFDDVN 295 (617)
Q Consensus 276 ----~~l~~~L--~~k~~LlVLDdv~ 295 (617)
-.+.+++ +++++|+++||+.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 1222333 6899999999993
No 430
>PRK15453 phosphoribulokinase; Provisional
Probab=94.42 E-value=0.062 Score=53.17 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.7
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....+|+|.|.+|+||||+|+.+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999976643
No 431
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.054 Score=58.33 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..+++|+|++|+||||++..++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999998875544
No 432
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.36 E-value=0.029 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
++++|+|++|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999985
No 433
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.35 E-value=0.12 Score=46.58 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=18.3
Q ss_pred EeccCCChhhHHHHHHHHHh
Q 037173 214 IWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 214 I~G~gGiGKTtLA~~~~~~~ 233 (617)
|.|+||+||||+|+.++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999874
No 434
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.34 E-value=0.61 Score=46.71 Aligned_cols=123 Identities=7% Similarity=0.024 Sum_probs=69.2
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-------------ccCceEEEEechhhhccCCHHHHHHHH
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-------------CFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-------------~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
++|...+..+ .-.....++|+.|+||+++|..++..+-- ..+...++.... .
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~----~---------- 71 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG----K---------- 71 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC----C----------
Confidence 4555555422 23567889999999999999999987421 112222221000 0
Q ss_pred HHHHhcCCCCCCHHH---HHHHH-----cCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-cccccc-C
Q 037173 263 LSKLLNDGNARNVES---QLNRL-----ARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QVLENC-W 330 (617)
Q Consensus 263 ~~~l~~~~~~~~~~~---l~~~L-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~-~ 330 (617)
.....++. +.+.+ .++.=++|+|+++ +.+..+.++..+..-.+++.+|++|.+. .+.+.. .
T Consensus 72 -------~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 72 -------GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred -------CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 00012222 22222 2444588999997 5567788888777656677776666653 333321 2
Q ss_pred cceEEEeccC
Q 037173 331 VNQIYRMKEL 340 (617)
Q Consensus 331 ~~~~~~l~~L 340 (617)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 2355666654
No 435
>PRK13975 thymidylate kinase; Provisional
Probab=94.33 E-value=0.039 Score=52.27 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998653
No 436
>PRK13948 shikimate kinase; Provisional
Probab=94.33 E-value=0.035 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.6
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+.|.++|+.|+||||+++.++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456889999999999999999998753
No 437
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.31 E-value=0.06 Score=51.54 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=26.2
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..++++|+++|..|+|||||...+.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457899999999999999999999987543
No 438
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.28 E-value=0.029 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEeccCCChhhHHHHHHHHHh
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (617)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 439
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.28 E-value=0.091 Score=57.00 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=58.9
Q ss_pred ccchh-hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHh
Q 037173 189 VGVAW-RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLL 267 (617)
Q Consensus 189 vGR~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 267 (617)
.|... .++.+..++. ....++.|+|+.|.||||+...+.+.+...-...+-+.+.- ...+.. + .+..
T Consensus 224 Lg~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv----E~~~~~----~-~q~~ 291 (486)
T TIGR02533 224 LGMSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV----EYQIEG----I-GQIQ 291 (486)
T ss_pred cCCCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe----eeecCC----C-ceEE
Confidence 34433 3444454443 22358999999999999999888776543212222222110 011110 0 0110
Q ss_pred cC-CCCCC-HHHHHHHHcCCCeEEEEeCCCCHHhHHHHHcc
Q 037173 268 ND-GNARN-VESQLNRLARKKVLLVFDDVNHPGQIESLIGC 306 (617)
Q Consensus 268 ~~-~~~~~-~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 306 (617)
-. ....+ ...++..|+..+=.|++.++.+.+........
T Consensus 292 v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 292 VNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred EccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHH
Confidence 00 11112 26777888999999999999988766554433
No 440
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.27 E-value=0.2 Score=53.44 Aligned_cols=85 Identities=25% Similarity=0.285 Sum_probs=50.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCH-----
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND--------GNARNV----- 275 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~----- 275 (617)
-+-++|.|.+|+|||||+..++.......+..+.+..+++ ....+.++.+++...-... .+....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999998876544333333332222 2334455555554421110 111111
Q ss_pred ----HHHHHHH---cCCCeEEEEeCCC
Q 037173 276 ----ESQLNRL---ARKKVLLVFDDVN 295 (617)
Q Consensus 276 ----~~l~~~L---~~k~~LlVLDdv~ 295 (617)
-.+.+++ +++++|+++|++-
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchH
Confidence 2344555 6789999999994
No 441
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.26 E-value=0.083 Score=59.01 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEE
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFAL 244 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (617)
.+.++|.+..++.+...+... +.+.++|++|+||||+|+.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 456899998888888777533 256699999999999999999886543 34444554
No 442
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.25 E-value=1.1 Score=47.97 Aligned_cols=239 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHhcceEEEEecCCccC--ChhhHHHHHHHHHHhhhCCCEEEEEEeecCCCccccccccchhhHHHhhhhChhH
Q 037173 60 RSLLDTIEASSISIIIFSERYAS--SRWCLDELLKILECKHDYGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGERYPEK 137 (617)
Q Consensus 60 ~~i~~~i~~s~~~i~v~s~~y~~--s~~c~~El~~~~~~~~~~~~~vipi~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~ 137 (617)
.++.+-+..=+..++|++-.|-. ..||.+ ..+++--....-.|.|.+......+.....
T Consensus 258 ~wLee~L~k~d~~~lVi~sh~QDfln~vCT~-------------------Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q 318 (614)
T KOG0927|consen 258 VWLEEYLAKYDRIILVIVSHSQDFLNGVCTN-------------------IIHLDNKKLIYYEGNYDQYVKTRSELEENQ 318 (614)
T ss_pred HHHHHHHHhccCceEEEEecchhhhhhHhhh-------------------hheecccceeeecCCHHHHhhHHHHHhHHH
Q ss_pred HHHHHHHHHhhhcc------CCcCCCCCchhhHHHHHHHhhhhccccccccccCCCcccchhhHHH--------------
Q 037173 138 MQRWGNALTEAANL------SGFDSHVIRPESKLIEAIANGVLKRLDATFQSENKGLVGVAWRIKE-------------- 197 (617)
Q Consensus 138 ~~~~~~~l~~~~~~------~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGR~~~~~~-------------- 197 (617)
+++|...-++++.. .|.....+...+.-.++........--...+.....+.=|-.+...
T Consensus 319 ~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~ 398 (614)
T KOG0927|consen 319 MKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFG 398 (614)
T ss_pred HHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccccC
Q ss_pred ------HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH-------hhhccCceEEEEechhhhccCCHHHHHHHHHH
Q 037173 198 ------IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK-------ISRCFEGSYFALDVREAEETGRIKDLQKELLS 264 (617)
Q Consensus 198 ------l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-------~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (617)
+-.-|.-+-+.-..|+++|+.|+|||||.+..+-+ +..+-..++-...-+......--.....-+..
T Consensus 399 y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~ 478 (614)
T KOG0927|consen 399 YSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMP 478 (614)
T ss_pred CCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHH
Q ss_pred HHhcCCCCCCHHHHHHHHcC-------------------------------CCeEEEEeCC---CCHHhHHHHHcccCCC
Q 037173 265 KLLNDGNARNVESQLNRLAR-------------------------------KKVLLVFDDV---NHPGQIESLIGCLDEL 310 (617)
Q Consensus 265 ~l~~~~~~~~~~~l~~~L~~-------------------------------k~~LlVLDdv---~~~~~~~~l~~~l~~~ 310 (617)
.... ....+.++..|.. .+-+||||.- -+.+..+.+...++..
T Consensus 479 ~~~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 479 KFPD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred hccc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Q ss_pred CCCcEEEEEcCC
Q 037173 311 ASGSRVIITTRD 322 (617)
Q Consensus 311 ~~gs~IlvTTR~ 322 (617)
..| +|++|.+
T Consensus 556 ~Gg--vv~vSHD 565 (614)
T KOG0927|consen 556 PGG--VVLVSHD 565 (614)
T ss_pred CCc--eeeeech
No 443
>PRK14530 adenylate kinase; Provisional
Probab=94.25 E-value=0.036 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|.|.|++|+||||+|+.++...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998864
No 444
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.044 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3588999999999999999999875
No 445
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.24 E-value=0.16 Score=49.14 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|.+.|..+=....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344445323234578999999999999999999887544444566665
No 446
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.22 E-value=0.12 Score=52.97 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEE
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFAL 244 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 244 (617)
..+.++|..+=....++-|+|++|+|||+++.+++....... ..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 344455543334467889999999999999999987643221 3567777
No 447
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.22 E-value=0.039 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+.++|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 448
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.082 Score=50.30 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=25.7
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|+|+|-||+||||+|..++.++..+-...+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999997777555433344444
No 449
>PRK08506 replicative DNA helicase; Provisional
Probab=94.21 E-value=0.42 Score=51.88 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=46.1
Q ss_pred cccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 188 LVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
..|...-...|.+++. +-.+..++.|-|.+|+|||++|..++.....+-..+++++ -.-...++...++...
T Consensus 172 ~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHh
Confidence 3444445555555542 3334568999999999999999999988654433455544 2345566666666544
No 450
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.19 E-value=0.059 Score=55.70 Aligned_cols=48 Identities=27% Similarity=0.159 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
..++|++..+..+...+..+ +.+.+.|++|+|||+||+.++..+...|
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 44889888888777666533 3678999999999999999999876443
No 451
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.036 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+-|.|+|-||+|||||+.+++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 346889999999999999999964
No 452
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.18 E-value=0.1 Score=56.39 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=48.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhcc-CceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCH----------HH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCF-EGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNV----------ES 277 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~----------~~ 277 (617)
-+-.+|+|++|+|||||++.+++.+.... +..+++..+.+- ...+.++.+.+-..+.....+... -.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER--peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER--PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc--hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999865433 333444433321 222233322221111111111111 22
Q ss_pred HHHHH--cCCCeEEEEeCCCC
Q 037173 278 QLNRL--ARKKVLLVFDDVNH 296 (617)
Q Consensus 278 l~~~L--~~k~~LlVLDdv~~ 296 (617)
+.+++ .++.+||++|++..
T Consensus 494 ~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchH
Confidence 33444 68899999999953
No 453
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.18 E-value=1.4 Score=43.80 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...++++|.+|+||||++..++.....+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999887654322334443
No 454
>PRK13946 shikimate kinase; Provisional
Probab=94.18 E-value=0.035 Score=52.06 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+.|.++|++|+||||+++.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 455
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.15 E-value=0.093 Score=48.54 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEe
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALD 245 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (617)
...|.|-|++|+|||+|..+.+..+++.|...+...+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 4789999999999999999999999888887665543
No 456
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.048 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998887765
No 457
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.11 E-value=0.28 Score=42.66 Aligned_cols=34 Identities=15% Similarity=-0.124 Sum_probs=25.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhh--ccCceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISR--CFEGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~ 244 (617)
.+.|.|+.|.|||+.+..+..+... .....+++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4679999999999999988887543 334455554
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.11 E-value=0.041 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++|+|++|+|||||++.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999864
No 459
>PRK13768 GTPase; Provisional
Probab=94.11 E-value=0.075 Score=52.59 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=26.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA 243 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (617)
.++.|.|+||+||||++..+.......-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5789999999999999999988765543333333
No 460
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.08 E-value=0.062 Score=58.46 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=26.6
Q ss_pred HhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 201 LLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 201 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+....++..+|+|.|++|+||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 333344567899999999999999999998764
No 461
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.07 E-value=0.043 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=17.8
Q ss_pred EEEeccCCChhhHHHHHHHHH
Q 037173 212 LGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~ 232 (617)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 462
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.06 E-value=0.22 Score=53.27 Aligned_cols=84 Identities=26% Similarity=0.275 Sum_probs=49.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhcc-CceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCH----
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCF-EGSYFALDVREAEETGRIKDLQKELLSKLLND--------GNARNV---- 275 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~---- 275 (617)
-+-++|.|.+|+|||||+.++++....+. +.++++. +++ ......++...+...-... .+....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 35789999999999999999998865433 3334432 221 2334455555554321110 111111
Q ss_pred -----HHHHHHH--c-CCCeEEEEeCCC
Q 037173 276 -----ESQLNRL--A-RKKVLLVFDDVN 295 (617)
Q Consensus 276 -----~~l~~~L--~-~k~~LlVLDdv~ 295 (617)
-.+.+++ + ++++|+++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 2344555 3 789999999994
No 463
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.05 E-value=0.076 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.058 Sum_probs=18.8
Q ss_pred EEEEeccCCChhhHHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~ 231 (617)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 464
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.03 E-value=0.013 Score=50.88 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=68.3
Q ss_pred eEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEE
Q 037173 523 IKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSL 598 (617)
Q Consensus 523 ~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L 598 (617)
+..+.+.... ..+++..+-.+++-+..|.|.++++. ++|..+ -+.-||-|+++.+++... |..|.+|-+|
T Consensus 55 l~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~neis---dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 55 LTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNEIS---DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred EEEEecccch---hhhCCHHHhhccchhhhhhcchhhhh---hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 4444444333 44677778888999999999999877 999999 888999999999998887 8899999999
Q ss_pred ecCCCCccccCCc
Q 037173 599 KCLSAKLNNFGMM 611 (617)
Q Consensus 599 ~l~~t~i~~Lp~~ 611 (617)
|..++.+.++|-.
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 9999988888754
No 465
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.99 E-value=0.071 Score=53.18 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=28.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
++++|+|.+|+|||||+..+...++++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999988776 455444
No 466
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.97 E-value=0.08 Score=58.58 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
+..+.|.+-.+.|.++.........+|.|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 44566776677777666544444568999999999999999999998654
No 467
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.95 E-value=0.069 Score=48.47 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987655
No 468
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.95 E-value=0.067 Score=56.64 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=34.2
Q ss_pred CCcccchhhHHHHHHHhh-------hc-----C--CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 186 KGLVGVAWRIKEIESLLC-------IR-----S--AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..++|.+..++.+...+. .. + ...+.+.++|++|+|||+||+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 347888877777654431 00 0 1135688999999999999999997653
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.94 E-value=0.048 Score=46.78 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEeccCCChhhHHHHHHHHH
Q 037173 212 LGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~ 232 (617)
|.|.|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999975
No 470
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.93 E-value=0.044 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..|.|.|+.|+||||+++.++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999874
No 471
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.93 E-value=0.021 Score=58.01 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=55.3
Q ss_pred cChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcccc
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
-+...|.++++||+|+|+++++. .+- ..+ .+.+|+-|.|..+.|+.+ .-.|..|.+|+|.+++|+.+
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~---~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKIT---RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred ChHHHHhhcccceEeccCCCccc---hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 35677999999999999999766 443 445 888999999999999888 44889999999999998875
No 472
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.92 E-value=0.12 Score=52.49 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=25.9
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.....+|+|+|++|+|||||+..+.......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998875443
No 473
>PLN02200 adenylate kinase family protein
Probab=93.90 E-value=0.054 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|.|.|++|+||||+|+.++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998763
No 474
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.90 E-value=0.28 Score=52.16 Aligned_cols=85 Identities=25% Similarity=0.285 Sum_probs=50.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCH-----
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND--------GNARNV----- 275 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~----- 275 (617)
-+-++|.|.+|+|||+|+..++.........++.+..+++ ....+.++++++...-... .+....
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE--R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC--CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999876544333333332322 2334555555554321100 111111
Q ss_pred ----HHHHHHH---cCCCeEEEEeCCC
Q 037173 276 ----ESQLNRL---ARKKVLLVFDDVN 295 (617)
Q Consensus 276 ----~~l~~~L---~~k~~LlVLDdv~ 295 (617)
-.+.+++ +++++|+++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 2344555 4689999999994
No 475
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.88 E-value=0.057 Score=61.51 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=9.2
Q ss_pred CCceEEEecCCCCccc
Q 037173 573 AELRHLEWQQYPLKTL 588 (617)
Q Consensus 573 ~~Lr~L~l~~~~i~~L 588 (617)
.+|++|+|+++.|+.+
T Consensus 342 ~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 342 SGLQELSVSDNQLASL 357 (788)
T ss_pred cccceEecCCCccCCC
Confidence 3556666666655554
No 476
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.86 E-value=0.078 Score=48.09 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 193 WRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..+++|.+++. + +++++.|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777774 2 58999999999999999888754
No 477
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.86 E-value=0.095 Score=53.56 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=25.6
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+..+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887654
No 478
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.86 E-value=0.089 Score=45.41 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+..+|.+.|.=|+||||+++.++..+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44799999999999999999999864
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=93.84 E-value=0.047 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999874
No 480
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.83 E-value=0.39 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
++..|+|.+|.||||++..+...+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999998887543
No 481
>PHA02774 E1; Provisional
Probab=93.83 E-value=0.22 Score=54.12 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=29.4
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
-+..|..+|. +.+...-+.|+|++|.|||.+|..+.+-+.
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445555553 233346899999999999999999998753
No 482
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.80 E-value=0.33 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
++..|.|.+|.||||++..+...+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999998876543
No 483
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.77 E-value=0.063 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.6
Q ss_pred EeccCCChhhHHHHHHHHHhhhcc
Q 037173 214 IWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 214 I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
|.|++|+||||+++.+.+.....-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~ 24 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG 24 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc
Confidence 689999999999999999865553
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.76 E-value=0.23 Score=48.66 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=35.1
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELLS 264 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (617)
...++.|.|.+|+|||+++.+++.+.... -..++|+. -.....++...++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHH
Confidence 34689999999999999999998885544 34556665 22344455555443
No 485
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.75 E-value=0.055 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|.|+.|+||||+|+.++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998864
No 486
>PRK06761 hypothetical protein; Provisional
Probab=93.73 E-value=0.071 Score=53.17 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999986543
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.72 E-value=0.05 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997753
No 488
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.71 E-value=0.16 Score=48.27 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.+|+|.|+.|+||||+++.+.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987644
No 489
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.66 E-value=0.064 Score=61.22 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=60.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc-ccccCCeeEEe
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL-NIHAENLVSLK 599 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L-i~~l~~L~~L~ 599 (617)
+.++.+.+..... ..++...+ .+|+.|+|+++.+. .+|..+ +.+|+.|+|++|.+..+ ..-+.+|++|+
T Consensus 199 ~~L~~L~Ls~N~L---tsLP~~l~---~nL~~L~Ls~N~Lt---sLP~~l-~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNEL---KSLPENLQ---GNIKTLYANSNQLT---SIPATL-PDTIQEMELSINRITELPERLPSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCC---CcCChhhc---cCCCEEECCCCccc---cCChhh-hccccEEECcCCccCcCChhHhCCCCEEE
Confidence 3466666654433 23444433 58999999998766 777765 34799999999999998 44457999999
Q ss_pred cCCCCccccCCcc
Q 037173 600 CLSAKLNNFGMMF 612 (617)
Q Consensus 600 l~~t~i~~Lp~~i 612 (617)
|++++|+.+|.++
T Consensus 269 Ls~N~L~~LP~~l 281 (754)
T PRK15370 269 LFHNKISCLPENL 281 (754)
T ss_pred CcCCccCcccccc
Confidence 9999999888754
No 490
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.66 E-value=0.064 Score=53.86 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467999999999999999988776554
No 491
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.64 E-value=0.033 Score=55.60 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+-+.++|++|+|||++++.+....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 467899999999999999987653
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.63 E-value=0.061 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=19.9
Q ss_pred eEEEEEeccCCChhhHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVF 230 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~ 230 (617)
-..++|.|++|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 493
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.63 E-value=4.7 Score=40.53 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=43.7
Q ss_pred CCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-ccccccC-cceEEEeccCChhHHHHHHHH
Q 037173 284 RKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QVLENCW-VNQIYRMKELVDVDAHKLFCQ 351 (617)
Q Consensus 284 ~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~ 351 (617)
+++-++|+|+++ +....+.++..+..-.+++.+|++|.+. .+.+... ....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 455689999997 4567788888887656667777766554 3443322 235677766 66666666643
No 494
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.60 E-value=0.055 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+.|+|++|+||||+|+.++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999875
No 495
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.59 E-value=0.3 Score=48.37 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=49.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh----hccCceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCH-
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS----RCFEGSYFALDVREAEETGRIKDLQKELLSKLLND--------GNARNV- 275 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~- 275 (617)
-+-++|.|-.|+|||+|+..++++.. .+-+.++++- +++ ......++.+++...-... .++...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGe--R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGI--TMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecc--ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 35689999999999999999887743 1123344443 221 2334555555554431110 111111
Q ss_pred --------HHHHHHH--c-CCCeEEEEeCCCC
Q 037173 276 --------ESQLNRL--A-RKKVLLVFDDVNH 296 (617)
Q Consensus 276 --------~~l~~~L--~-~k~~LlVLDdv~~ 296 (617)
-.+.+++ + ++++|+++||+-.
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 2344555 3 6899999999953
No 496
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.59 E-value=0.21 Score=51.12 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc------cCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC------FEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 244 (617)
.+..+|..+=....++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3445554332346788999999999999999998774321 12577877
No 497
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.58 E-value=0.051 Score=50.95 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
+.+.|+|++|+||+||+..+.......|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 6899999999999999999988643333
No 498
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.056 Score=49.31 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
+-|.++|+.|+||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765444
No 499
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.22 Score=47.32 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCeEEEEeCCCCH---HhHHHHHcccCC-CCCCcEEEEEcCCcccccccCcceEE
Q 037173 276 ESQLNRLARKKVLLVFDDVNHP---GQIESLIGCLDE-LASGSRVIITTRDKQVLENCWVNQIY 335 (617)
Q Consensus 276 ~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gs~IlvTTR~~~v~~~~~~~~~~ 335 (617)
.++.+.+--+|-+.|||..++- +.++.+...+.. ..+|+-+++.|-...++.....+.++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 4555566678889999998753 333332222211 13466677777777777766544443
No 500
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.56 E-value=0.098 Score=42.63 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=25.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
++.+.|.+|+||||++..++..+++ ....+.+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~ 33 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK-RGKRVLLI 33 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 3678999999999999999998765 23344443
Done!