Query 037173
Match_columns 617
No_of_seqs 538 out of 3401
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-45 3.9E-50 340.1 11.1 172 8-179 28-202 (204)
2 2a5y_B CED-4; apoptosis; HET: 100.0 2.4E-44 8.3E-49 396.1 21.6 292 189-494 131-472 (549)
3 3jrn_A AT1G72930 protein; TIR 100.0 2.9E-45 9.8E-50 332.7 11.3 170 11-182 4-175 (176)
4 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-38 1.1E-42 381.3 25.4 301 180-493 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 1.3E-37 4.6E-42 347.5 21.8 273 186-486 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-36 2.2E-40 333.3 24.9 296 180-489 118-448 (591)
7 3h16_A TIR protein; bacteria T 100.0 1.7E-30 5.9E-35 235.5 5.5 121 10-131 15-136 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 2E-25 7E-30 198.9 2.3 105 10-116 5-112 (146)
9 2js7_A Myeloid differentiation 99.8 2.6E-22 8.8E-27 181.9 4.4 101 11-113 12-117 (160)
10 2j67_A TOLL like receptor 10; 99.8 3.1E-22 1.1E-26 184.2 3.5 102 10-113 30-136 (178)
11 1fyx_A TOLL-like receptor 2; b 99.8 1.6E-22 5.6E-27 181.4 1.5 98 12-111 2-104 (149)
12 1t3g_A X-linked interleukin-1 99.8 4E-21 1.4E-25 173.8 7.2 100 14-113 1-114 (159)
13 2qen_A Walker-type ATPase; unk 99.8 6.2E-18 2.1E-22 175.1 23.1 288 178-487 4-349 (350)
14 2fna_A Conserved hypothetical 99.8 1.5E-17 5E-22 172.6 20.2 287 178-486 5-356 (357)
15 1w5s_A Origin recognition comp 99.7 6.1E-16 2.1E-20 163.9 20.8 279 184-472 20-371 (412)
16 2qby_B CDC6 homolog 3, cell di 99.6 3.3E-13 1.1E-17 141.4 26.6 273 185-472 19-339 (384)
17 2qby_A CDC6 homolog 1, cell di 99.6 3.6E-13 1.2E-17 140.9 23.1 279 183-472 17-348 (386)
18 3j0a_A TOLL-like receptor 5; m 99.5 3E-15 1E-19 173.2 7.1 102 11-114 666-775 (844)
19 2v1u_A Cell division control p 99.5 3E-12 1E-16 134.0 25.5 278 184-472 17-351 (387)
20 1fnn_A CDC6P, cell division co 99.5 2.9E-12 9.9E-17 134.3 23.9 299 184-493 15-387 (389)
21 1njg_A DNA polymerase III subu 99.4 9.7E-12 3.3E-16 120.9 16.7 186 184-388 21-231 (250)
22 2chg_A Replication factor C sm 99.3 5.8E-11 2E-15 113.7 15.9 187 183-386 14-205 (226)
23 1sxj_B Activator 1 37 kDa subu 99.1 6.6E-10 2.3E-14 113.1 16.3 184 184-385 19-210 (323)
24 1iqp_A RFCS; clamp loader, ext 99.1 1.4E-09 4.7E-14 111.0 16.9 186 183-386 22-213 (327)
25 1hqc_A RUVB; extended AAA-ATPa 99.1 1.9E-08 6.6E-13 102.4 23.8 261 184-485 10-311 (324)
26 2chq_A Replication factor C sm 98.9 1.1E-08 3.7E-13 103.8 14.0 184 183-385 14-204 (319)
27 1jr3_A DNA polymerase III subu 98.9 1.3E-08 4.4E-13 105.8 13.9 191 184-386 14-222 (373)
28 3pfi_A Holliday junction ATP-d 98.8 2.2E-07 7.6E-12 95.1 21.1 252 184-476 27-318 (338)
29 3te6_A Regulatory protein SIR3 98.7 2.7E-07 9.2E-12 92.6 17.5 163 187-354 21-212 (318)
30 1jbk_A CLPB protein; beta barr 98.7 4E-08 1.4E-12 91.3 9.5 50 184-235 20-69 (195)
31 1sxj_D Activator 1 41 kDa subu 98.7 2.6E-07 8.8E-12 95.1 16.0 194 183-384 34-234 (353)
32 3h4m_A Proteasome-activating n 98.7 5.5E-07 1.9E-11 89.7 17.5 180 182-383 13-229 (285)
33 3bos_A Putative DNA replicatio 98.7 4.8E-08 1.6E-12 94.5 9.3 175 184-386 26-218 (242)
34 3d8b_A Fidgetin-like protein 1 98.7 9.5E-07 3.3E-11 91.0 19.4 200 162-386 63-296 (357)
35 2z4s_A Chromosomal replication 98.6 2E-07 6.7E-12 98.9 12.5 181 186-384 105-305 (440)
36 1sxj_A Activator 1 95 kDa subu 98.6 3.3E-07 1.1E-11 99.4 13.5 188 184-384 37-252 (516)
37 3eie_A Vacuolar protein sortin 98.6 2.9E-06 1E-10 86.1 19.5 182 182-385 14-228 (322)
38 3uk6_A RUVB-like 2; hexameric 98.6 7.5E-07 2.6E-11 92.2 15.2 197 185-385 43-303 (368)
39 1d2n_A N-ethylmaleimide-sensit 98.6 2.5E-06 8.7E-11 84.3 18.4 168 186-377 33-229 (272)
40 2qz4_A Paraplegin; AAA+, SPG7, 98.6 5E-06 1.7E-10 81.5 20.2 180 185-384 5-221 (262)
41 1sxj_E Activator 1 40 kDa subu 98.5 5.9E-07 2E-11 92.5 13.8 196 183-385 11-237 (354)
42 1l8q_A Chromosomal replication 98.5 2E-06 7E-11 87.3 16.0 178 185-381 10-204 (324)
43 3pvs_A Replication-associated 98.5 2.7E-06 9.1E-11 90.1 16.3 178 183-384 23-214 (447)
44 3syl_A Protein CBBX; photosynt 98.4 2.8E-06 9.5E-11 85.6 15.6 149 187-354 32-218 (309)
45 1xwi_A SKD1 protein; VPS4B, AA 98.4 9.5E-06 3.3E-10 82.2 19.5 182 184-386 10-224 (322)
46 3u61_B DNA polymerase accessor 98.4 4.2E-06 1.4E-10 84.9 16.0 178 183-382 23-213 (324)
47 2qp9_X Vacuolar protein sortin 98.4 8.4E-06 2.9E-10 83.8 18.2 183 183-385 48-261 (355)
48 2zan_A Vacuolar protein sortin 98.4 9.3E-06 3.2E-10 86.1 19.0 184 183-385 131-345 (444)
49 2p65_A Hypothetical protein PF 98.4 1.2E-06 4.1E-11 80.8 10.7 50 184-235 20-69 (187)
50 3b9p_A CG5977-PA, isoform A; A 98.4 8.8E-06 3E-10 81.4 17.6 183 182-385 17-233 (297)
51 3vfd_A Spastin; ATPase, microt 98.4 1.2E-05 4.1E-10 83.8 18.4 182 182-385 111-326 (389)
52 1a5t_A Delta prime, HOLB; zinc 98.3 1.1E-05 3.7E-10 82.3 16.8 173 192-385 8-205 (334)
53 1sxj_C Activator 1 40 kDa subu 98.3 9.9E-06 3.4E-10 82.8 16.1 181 185-382 24-209 (340)
54 3cf0_A Transitional endoplasmi 98.3 1.3E-05 4.6E-10 80.3 16.3 175 184-380 13-223 (301)
55 3n70_A Transport activator; si 98.3 1.9E-06 6.5E-11 76.4 8.8 113 187-323 2-116 (145)
56 1in4_A RUVB, holliday junction 98.2 0.00012 3.9E-09 74.6 21.8 256 185-479 24-318 (334)
57 3e6j_A Variable lymphocyte rec 98.2 2.7E-06 9.3E-11 81.7 8.3 69 539-610 79-152 (229)
58 3hu3_A Transitional endoplasmi 98.2 2.7E-05 9.2E-10 83.2 16.0 178 186-383 204-413 (489)
59 2r9u_A Variable lymphocyte rec 98.1 3E-06 1E-10 77.7 7.1 89 521-615 33-127 (174)
60 3pxg_A Negative regulator of g 98.1 1.8E-05 6.2E-10 84.4 13.8 147 184-353 178-338 (468)
61 3ec2_A DNA replication protein 98.1 1.2E-05 4.2E-10 73.9 10.6 118 191-323 19-143 (180)
62 4b4t_J 26S protease regulatory 98.1 9.7E-05 3.3E-09 76.0 18.1 172 184-378 146-354 (405)
63 1qvr_A CLPB protein; coiled co 98.1 1E-05 3.5E-10 93.1 11.9 150 183-352 167-344 (854)
64 4b4t_L 26S protease subunit RP 98.1 0.00015 5.2E-09 75.7 19.0 172 184-378 179-387 (437)
65 2w58_A DNAI, primosome compone 98.1 1.3E-05 4.4E-10 75.2 9.8 121 185-322 24-158 (202)
66 2v9t_B SLIT homolog 2 protein 98.1 8.1E-06 2.8E-10 77.8 8.4 85 521-611 56-146 (220)
67 3e6j_A Variable lymphocyte rec 98.1 8.8E-06 3E-10 78.1 8.6 89 521-615 40-134 (229)
68 2o6r_A Variable lymphocyte rec 98.0 9.3E-06 3.2E-10 74.4 8.0 86 521-612 28-119 (177)
69 2v70_A SLIT-2, SLIT homolog 2 98.0 7.7E-06 2.6E-10 78.0 7.6 87 521-613 57-150 (220)
70 2gno_A DNA polymerase III, gam 98.0 4.8E-05 1.6E-09 76.2 13.4 145 190-353 1-152 (305)
71 4b8c_D Glucose-repressible alc 98.0 4E-06 1.4E-10 94.7 6.0 65 546-613 245-313 (727)
72 4b4t_M 26S protease regulatory 98.0 0.00014 4.9E-09 75.8 17.3 173 183-378 178-387 (434)
73 3g39_A Variable lymphocyte rec 98.0 8.6E-06 2.9E-10 74.3 7.2 86 521-612 30-121 (170)
74 1ofh_A ATP-dependent HSL prote 98.0 3.3E-05 1.1E-09 77.5 11.6 48 186-233 15-74 (310)
75 2v9t_B SLIT homolog 2 protein 98.0 1.2E-05 4E-10 76.7 7.8 84 521-610 32-121 (220)
76 1w8a_A SLIT protein; signaling 98.0 1.3E-05 4.4E-10 74.6 7.8 86 522-613 30-123 (192)
77 4b4t_H 26S protease regulatory 98.0 0.00021 7.3E-09 74.5 17.6 171 185-378 208-415 (467)
78 2wfh_A SLIT homolog 2 protein 98.0 1.7E-05 5.7E-10 74.0 8.5 84 521-611 31-120 (193)
79 1r6b_X CLPA protein; AAA+, N-t 98.0 8.6E-05 2.9E-09 84.4 16.0 151 184-353 184-362 (758)
80 4fcw_A Chaperone protein CLPB; 98.0 4.9E-05 1.7E-09 76.4 12.3 50 186-235 17-73 (311)
81 4b4t_K 26S protease regulatory 98.0 0.00015 5.2E-09 75.6 16.2 172 184-378 170-379 (428)
82 4g8a_A TOLL-like receptor 4; l 98.0 9.5E-06 3.2E-10 90.0 7.6 83 522-610 53-141 (635)
83 2o6s_A Variable lymphocyte rec 97.9 1.9E-05 6.6E-10 74.3 8.6 86 520-611 51-142 (208)
84 2ell_A Acidic leucine-rich nuc 97.9 1.8E-05 6.1E-10 71.7 7.9 83 520-610 48-137 (168)
85 2o6s_A Variable lymphocyte rec 97.9 1.9E-05 6.5E-10 74.4 8.1 85 521-611 28-118 (208)
86 4b4t_I 26S protease regulatory 97.9 0.00037 1.3E-08 71.9 18.1 172 184-378 180-388 (437)
87 2r9u_A Variable lymphocyte rec 97.9 2E-05 7E-10 72.0 7.6 61 548-611 33-99 (174)
88 1lv7_A FTSH; alpha/beta domain 97.9 0.00011 3.8E-09 71.6 13.3 179 183-382 9-222 (257)
89 2je0_A Acidic leucine-rich nuc 97.9 1.3E-05 4.4E-10 71.1 5.8 83 520-610 41-130 (149)
90 1p9a_G Platelet glycoprotein I 97.9 2.4E-05 8.2E-10 78.0 8.4 89 520-614 99-193 (290)
91 2bjv_A PSP operon transcriptio 97.9 2.6E-05 8.8E-10 76.6 8.4 49 186-234 6-54 (265)
92 3m19_A Variable lymphocyte rec 97.9 2.7E-05 9.3E-10 75.7 8.4 70 538-610 97-172 (251)
93 3co5_A Putative two-component 97.9 5.2E-06 1.8E-10 73.4 2.8 48 186-233 4-51 (143)
94 2ell_A Acidic leucine-rich nuc 97.9 1.3E-05 4.5E-10 72.7 5.6 62 544-609 45-111 (168)
95 3pxi_A Negative regulator of g 97.9 7E-05 2.4E-09 85.1 12.7 147 184-353 178-338 (758)
96 1dce_A Protein (RAB geranylger 97.8 1.6E-05 5.5E-10 87.0 7.0 85 521-613 463-553 (567)
97 3m19_A Variable lymphocyte rec 97.8 3.2E-05 1.1E-09 75.2 8.4 84 521-610 59-148 (251)
98 2ce7_A Cell division protein F 97.8 0.00042 1.4E-08 73.4 17.5 172 185-378 15-221 (476)
99 2v70_A SLIT-2, SLIT homolog 2 97.8 3.1E-05 1.1E-09 73.7 8.1 86 522-613 33-126 (220)
100 2xot_A Amphoterin-induced prot 97.8 2.6E-05 8.8E-10 80.4 7.9 67 541-610 81-153 (361)
101 3vq2_A TLR4, TOLL-like recepto 97.8 2.5E-05 8.4E-10 86.4 8.1 90 520-615 55-152 (606)
102 4b8c_D Glucose-repressible alc 97.8 9E-06 3.1E-10 91.9 4.6 75 538-615 214-292 (727)
103 2o6q_A Variable lymphocyte rec 97.8 4.2E-05 1.4E-09 75.3 8.7 68 540-610 101-174 (270)
104 2je0_A Acidic leucine-rich nuc 97.8 1.6E-05 5.3E-10 70.6 4.8 89 520-614 16-111 (149)
105 1ojl_A Transcriptional regulat 97.8 8.4E-05 2.9E-09 74.5 10.7 48 186-233 2-49 (304)
106 1a9n_A U2A', U2A'; complex (nu 97.8 2E-05 6.9E-10 72.1 5.2 82 522-611 43-131 (176)
107 3o6n_A APL1; leucine-rich repe 97.7 3.6E-05 1.2E-09 80.1 7.3 67 540-609 85-157 (390)
108 2o6q_A Variable lymphocyte rec 97.7 6.3E-05 2.2E-09 74.0 8.6 86 520-611 108-199 (270)
109 3g39_A Variable lymphocyte rec 97.7 5.4E-05 1.8E-09 68.9 7.5 62 547-611 29-96 (170)
110 4ezg_A Putative uncharacterize 97.7 9E-05 3.1E-09 69.1 9.0 64 544-609 108-175 (197)
111 4ezg_A Putative uncharacterize 97.7 3.3E-05 1.1E-09 72.1 6.1 65 543-609 83-153 (197)
112 3vq2_A TLR4, TOLL-like recepto 97.7 4E-05 1.4E-09 84.7 7.8 89 521-615 32-127 (606)
113 1a9n_A U2A', U2A'; complex (nu 97.7 5.5E-05 1.9E-09 69.1 7.3 84 519-610 17-105 (176)
114 2r62_A Cell division protease 97.7 3.5E-05 1.2E-09 75.7 6.4 152 184-353 9-196 (268)
115 3rfs_A Internalin B, repeat mo 97.7 6.6E-05 2.3E-09 73.9 8.2 85 521-611 109-199 (272)
116 3pxi_A Negative regulator of g 97.7 0.00011 3.7E-09 83.5 11.0 147 186-353 491-675 (758)
117 1ogq_A PGIP-2, polygalacturona 97.7 5.4E-05 1.8E-09 76.3 7.3 71 542-614 95-171 (313)
118 4fcg_A Uncharacterized protein 97.7 5.3E-05 1.8E-09 76.9 7.3 66 545-613 180-250 (328)
119 4fcg_A Uncharacterized protein 97.7 3.6E-05 1.2E-09 78.1 5.8 88 520-614 80-172 (328)
120 4g8a_A TOLL-like receptor 4; l 97.7 4.6E-05 1.6E-09 84.4 7.2 82 520-607 75-162 (635)
121 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 6.4E-05 2.2E-09 82.3 8.2 89 521-615 52-145 (562)
122 2z7x_B TOLL-like receptor 1, v 97.7 4.6E-05 1.6E-09 82.5 6.9 89 521-615 21-114 (520)
123 3rfs_A Internalin B, repeat mo 97.7 9.2E-05 3.1E-09 72.9 8.4 65 539-606 148-218 (272)
124 2z63_A TOLL-like receptor 4, v 97.7 6.3E-05 2.1E-09 82.3 7.9 89 520-614 51-147 (570)
125 2c9o_A RUVB-like 1; hexameric 97.6 0.0012 4E-08 70.1 17.2 95 287-384 297-409 (456)
126 2o6r_A Variable lymphocyte rec 97.6 6.1E-05 2.1E-09 68.9 6.1 85 520-610 51-141 (177)
127 2z62_A TOLL-like receptor 4, v 97.6 8.9E-05 3E-09 73.1 7.7 64 543-609 95-165 (276)
128 1ogq_A PGIP-2, polygalacturona 97.6 6.3E-05 2.2E-09 75.8 6.5 68 543-612 71-145 (313)
129 2z80_A TOLL-like receptor 2, v 97.6 8E-05 2.7E-09 76.3 7.4 84 521-610 52-141 (353)
130 3o53_A Protein LRIM1, AGAP0063 97.6 9.6E-05 3.3E-09 74.6 7.8 88 521-614 144-235 (317)
131 3oja_B Anopheles plasmodium-re 97.6 6.6E-05 2.3E-09 82.9 7.1 69 539-610 90-164 (597)
132 2ifg_A High affinity nerve gro 97.6 7.2E-05 2.5E-09 76.4 6.9 65 544-611 27-98 (347)
133 2z63_A TOLL-like receptor 4, v 97.6 8.7E-05 3E-09 81.2 7.9 84 521-610 28-117 (570)
134 1eiw_A Hypothetical protein MT 97.6 6.4E-05 2.2E-09 62.3 5.0 72 14-108 3-74 (111)
135 1ozn_A Reticulon 4 receptor; N 97.6 0.00014 4.7E-09 72.0 8.5 66 540-608 121-192 (285)
136 2xwt_C Thyrotropin receptor; s 97.6 8.9E-05 3.1E-09 71.3 6.9 68 540-610 72-148 (239)
137 1w8a_A SLIT protein; signaling 97.6 0.00012 4.2E-09 67.9 7.5 81 520-606 53-139 (192)
138 1p9a_G Platelet glycoprotein I 97.6 0.00013 4.4E-09 72.6 8.1 86 520-612 76-167 (290)
139 1ixz_A ATP-dependent metallopr 97.6 0.0011 3.6E-08 64.4 14.5 175 183-378 13-221 (254)
140 1ozn_A Reticulon 4 receptor; N 97.6 0.00015 5.1E-09 71.8 8.3 85 520-610 128-218 (285)
141 2qgz_A Helicase loader, putati 97.5 0.00019 6.5E-09 72.0 9.0 52 193-244 135-188 (308)
142 2z62_A TOLL-like receptor 4, v 97.5 0.00013 4.3E-09 72.0 7.5 89 520-614 51-147 (276)
143 2xot_A Amphoterin-induced prot 97.5 0.00012 4.2E-09 75.3 7.5 82 522-609 40-128 (361)
144 2wfh_A SLIT homolog 2 protein 97.5 0.00016 5.4E-09 67.3 7.6 81 520-606 53-139 (193)
145 1h6u_A Internalin H; cell adhe 97.5 9.4E-05 3.2E-09 74.3 6.5 82 520-610 62-146 (308)
146 3cf2_A TER ATPase, transitiona 97.5 0.00051 1.7E-08 77.1 12.5 172 186-379 204-408 (806)
147 3o6n_A APL1; leucine-rich repe 97.5 0.00016 5.5E-09 75.1 8.0 67 539-608 108-180 (390)
148 1dce_A Protein (RAB geranylger 97.5 0.00012 4.2E-09 80.0 7.3 85 523-615 443-532 (567)
149 3zyi_A Leucine-rich repeat-con 97.5 0.00014 4.9E-09 77.2 7.6 69 539-610 90-164 (452)
150 2id5_A Lingo-1, leucine rich r 97.5 0.00015 5.2E-09 77.5 7.7 65 541-608 49-119 (477)
151 1iy2_A ATP-dependent metallopr 97.5 0.0025 8.7E-08 62.7 15.9 176 182-378 36-245 (278)
152 4fmz_A Internalin; leucine ric 97.5 0.00014 4.9E-09 74.1 6.9 56 544-603 84-142 (347)
153 3t6q_A CD180 antigen; protein- 97.5 0.00014 4.7E-09 80.3 7.3 83 521-608 57-144 (606)
154 2kjq_A DNAA-related protein; s 97.5 0.00012 4.2E-09 64.9 5.5 36 209-244 36-71 (149)
155 3v47_A TOLL-like receptor 5B a 97.5 0.00019 6.4E-09 76.2 8.0 84 520-608 53-144 (455)
156 2z81_A CD282 antigen, TOLL-lik 97.5 0.00015 5.3E-09 78.9 7.5 82 521-608 26-113 (549)
157 2z66_A Variable lymphocyte rec 97.4 7.6E-05 2.6E-09 74.7 4.6 85 522-609 29-117 (306)
158 3oja_B Anopheles plasmodium-re 97.4 0.00019 6.4E-09 79.2 8.1 84 520-609 98-187 (597)
159 3oja_A Leucine-rich immune mol 97.4 0.00019 6.4E-09 77.1 7.8 90 520-614 143-235 (487)
160 1h6t_A Internalin B; cell adhe 97.4 0.00021 7.1E-09 71.2 7.5 82 520-610 89-173 (291)
161 1h6u_A Internalin H; cell adhe 97.4 0.00021 7.1E-09 71.8 7.5 83 519-610 83-168 (308)
162 1xeu_A Internalin C; cellular 97.4 0.00027 9.2E-09 69.2 8.1 38 571-608 126-165 (263)
163 3j0a_A TOLL-like receptor 5; m 97.4 0.00018 6.1E-09 82.9 7.9 66 540-608 65-138 (844)
164 1h6t_A Internalin B; cell adhe 97.4 0.00021 7E-09 71.2 6.7 81 520-609 67-150 (291)
165 2xwt_C Thyrotropin receptor; s 97.4 0.00032 1.1E-08 67.4 8.0 84 521-611 80-174 (239)
166 2ft3_A Biglycan; proteoglycan, 97.4 0.00025 8.4E-09 71.9 7.4 68 540-610 70-140 (332)
167 3zyj_A Leucine-rich repeat-con 97.4 0.0002 6.8E-09 75.8 6.9 69 539-610 103-178 (440)
168 1xku_A Decorin; proteoglycan, 97.4 0.00028 9.5E-09 71.5 7.7 83 522-610 193-280 (330)
169 3t15_A Ribulose bisphosphate c 97.4 0.00097 3.3E-08 66.3 11.4 27 208-234 35-61 (293)
170 1wwl_A Monocyte differentiatio 97.4 0.00022 7.6E-09 71.6 6.7 90 518-610 198-291 (312)
171 2z66_A Variable lymphocyte rec 97.3 0.0003 1E-08 70.3 7.5 84 520-608 149-238 (306)
172 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0022 7.5E-08 68.4 14.2 172 183-378 28-236 (499)
173 1ziw_A TOLL-like receptor 3; i 97.3 0.00022 7.6E-09 79.9 7.0 83 521-609 49-137 (680)
174 3o53_A Protein LRIM1, AGAP0063 97.3 0.00021 7.2E-09 72.0 6.1 89 521-615 120-213 (317)
175 4glp_A Monocyte differentiatio 97.3 0.00013 4.3E-09 73.4 4.4 90 520-612 144-244 (310)
176 1xku_A Decorin; proteoglycan, 97.3 0.00039 1.3E-08 70.3 8.1 82 522-609 53-137 (330)
177 1o6v_A Internalin A; bacterial 97.3 0.00025 8.4E-09 75.7 6.7 62 544-609 64-128 (466)
178 2x8a_A Nuclear valosin-contain 97.3 0.0041 1.4E-07 61.0 14.8 150 186-353 10-191 (274)
179 3v47_A TOLL-like receptor 5B a 97.3 0.00032 1.1E-08 74.3 7.2 63 541-606 340-408 (455)
180 1ziw_A TOLL-like receptor 3; i 97.3 0.00032 1.1E-08 78.6 7.4 84 521-610 73-162 (680)
181 1xeu_A Internalin C; cellular 97.3 0.00017 5.9E-09 70.6 4.5 79 521-609 41-122 (263)
182 1um8_A ATP-dependent CLP prote 97.3 0.0023 8E-08 66.0 13.3 25 209-233 72-96 (376)
183 1m9s_A Internalin B; cell inva 97.2 0.00042 1.4E-08 76.3 7.9 64 543-610 104-170 (605)
184 3zyj_A Leucine-rich repeat-con 97.2 0.00049 1.7E-08 72.8 8.2 67 539-609 176-247 (440)
185 3m6a_A ATP-dependent protease 97.2 0.0037 1.3E-07 67.8 15.2 158 187-353 82-266 (543)
186 3t6q_A CD180 antigen; protein- 97.2 0.00041 1.4E-08 76.5 7.9 68 539-608 48-120 (606)
187 3bz5_A Internalin-J, INLJ; leu 97.2 0.00045 1.6E-08 73.4 7.9 60 544-608 60-121 (457)
188 2id5_A Lingo-1, leucine rich r 97.2 0.00043 1.5E-08 73.9 7.7 65 541-608 73-143 (477)
189 4eco_A Uncharacterized protein 97.2 0.00053 1.8E-08 76.2 8.4 88 522-615 434-535 (636)
190 3oja_A Leucine-rich immune mol 97.2 0.00032 1.1E-08 75.3 6.4 90 521-615 120-213 (487)
191 2z80_A TOLL-like receptor 2, v 97.2 0.00039 1.3E-08 71.1 6.7 66 540-608 116-189 (353)
192 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0018 6E-08 73.6 12.7 48 186-233 458-512 (758)
193 4ecn_A Leucine-rich repeat pro 97.2 0.00059 2E-08 78.2 8.7 88 522-615 674-775 (876)
194 1ds9_A Outer arm dynein; leuci 97.2 3E-05 1E-09 72.4 -1.7 82 521-610 48-132 (198)
195 3zyi_A Leucine-rich repeat-con 97.2 0.00062 2.1E-08 72.2 8.1 65 542-609 141-212 (452)
196 1ypw_A Transitional endoplasmi 97.2 0.0022 7.4E-08 73.0 12.8 150 185-353 203-385 (806)
197 2ft3_A Biglycan; proteoglycan, 97.1 0.00038 1.3E-08 70.5 5.8 44 542-588 235-279 (332)
198 2z7x_B TOLL-like receptor 1, v 97.1 0.00048 1.6E-08 74.4 6.7 81 520-607 44-129 (520)
199 1ds9_A Outer arm dynein; leuci 97.1 1.6E-05 5.5E-10 74.3 -4.4 61 543-607 88-154 (198)
200 4ecn_A Leucine-rich repeat pro 97.1 0.00061 2.1E-08 78.1 7.8 86 521-613 548-639 (876)
201 2z81_A CD282 antigen, TOLL-lik 97.1 0.00053 1.8E-08 74.6 7.0 66 542-610 381-468 (549)
202 2ifg_A High affinity nerve gro 97.1 0.00072 2.5E-08 68.9 7.3 81 521-607 31-117 (347)
203 1m9s_A Internalin B; cell inva 97.1 0.00055 1.9E-08 75.4 6.6 82 520-610 130-214 (605)
204 3g06_A SSPH2 (leucine-rich rep 97.0 0.0012 4.1E-08 72.8 8.7 38 546-588 79-116 (622)
205 1wwl_A Monocyte differentiatio 97.0 0.00061 2.1E-08 68.4 5.8 83 520-609 120-217 (312)
206 1o6v_A Internalin A; bacterial 97.0 0.00048 1.6E-08 73.4 5.2 82 520-610 67-151 (466)
207 3bz5_A Internalin-J, INLJ; leu 97.0 0.00046 1.6E-08 73.4 4.7 64 542-609 36-101 (457)
208 4fmz_A Internalin; leucine ric 96.9 0.0014 4.7E-08 66.7 7.6 81 520-609 87-171 (347)
209 4glp_A Monocyte differentiatio 96.9 0.00038 1.3E-08 69.8 3.2 88 520-610 196-289 (310)
210 4eco_A Uncharacterized protein 96.9 0.0014 4.8E-08 72.8 8.1 85 522-612 489-585 (636)
211 3a79_B TLR6, VLRB.59, TOLL-lik 96.9 0.0015 5E-08 71.5 8.1 69 540-611 420-491 (562)
212 1g5t_A COB(I)alamin adenosyltr 96.9 0.0024 8.1E-08 58.7 8.1 113 210-323 29-163 (196)
213 1jr3_D DNA polymerase III, del 96.9 0.012 4.2E-07 59.6 14.5 156 208-384 17-184 (343)
214 1qvr_A CLPB protein; coiled co 96.8 0.0024 8.1E-08 73.4 9.1 49 186-234 558-613 (854)
215 3rgz_A Protein brassinosteroid 96.8 0.00086 2.9E-08 76.3 5.3 68 541-610 649-722 (768)
216 2cvh_A DNA repair and recombin 96.8 0.0031 1.1E-07 59.4 8.3 33 209-244 20-52 (220)
217 3g06_A SSPH2 (leucine-rich rep 96.7 0.0024 8.1E-08 70.4 7.8 59 548-611 61-119 (622)
218 3rgz_A Protein brassinosteroid 96.7 0.0022 7.6E-08 72.9 7.7 71 541-613 483-559 (768)
219 3rw6_A Nuclear RNA export fact 96.6 0.0012 4E-08 64.4 3.9 62 545-606 167-233 (267)
220 1jl5_A Outer protein YOPM; leu 96.6 0.0036 1.2E-07 66.4 7.9 81 521-611 131-213 (454)
221 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0087 3E-07 56.7 9.2 35 210-244 24-58 (235)
222 3cvr_A Invasion plasmid antige 96.4 0.0046 1.6E-07 67.3 7.7 30 576-605 210-242 (571)
223 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0044 1.5E-07 61.5 6.7 24 209-232 123-146 (331)
224 2ca6_A RAN GTPase-activating p 96.3 0.0023 7.8E-08 66.2 4.4 91 521-612 187-298 (386)
225 4ay9_X Follicle-stimulating ho 96.3 0.0046 1.6E-07 63.0 6.5 85 521-610 30-121 (350)
226 3cvr_A Invasion plasmid antige 96.3 0.0065 2.2E-07 66.2 7.8 79 520-610 99-177 (571)
227 3hr8_A Protein RECA; alpha and 96.2 0.019 6.6E-07 58.2 10.5 49 196-244 47-96 (356)
228 4ay9_X Follicle-stimulating ho 96.2 0.0047 1.6E-07 62.9 5.8 70 539-611 144-220 (350)
229 2ca6_A RAN GTPase-activating p 96.1 0.0011 3.7E-08 68.7 0.7 91 519-609 214-319 (386)
230 1ye8_A Protein THEP1, hypothet 96.1 0.056 1.9E-06 49.0 12.1 24 211-234 2-25 (178)
231 3e4g_A ATP synthase subunit S, 96.1 0.0026 8.8E-08 57.6 3.0 83 520-606 60-153 (176)
232 3dm5_A SRP54, signal recogniti 96.1 0.073 2.5E-06 55.4 14.3 29 208-236 99-127 (443)
233 1rz3_A Hypothetical protein rb 96.1 0.01 3.5E-07 55.1 7.2 45 191-235 3-48 (201)
234 1jl5_A Outer protein YOPM; leu 96.0 0.0073 2.5E-07 64.0 6.5 40 571-610 235-274 (454)
235 3cf2_A TER ATPase, transitiona 96.0 0.0099 3.4E-07 66.7 7.8 151 185-353 476-661 (806)
236 2r44_A Uncharacterized protein 96.0 0.0038 1.3E-07 63.1 4.1 47 185-235 26-72 (331)
237 3jvv_A Twitching mobility prot 96.0 0.0037 1.3E-07 63.7 3.8 108 210-325 124-233 (356)
238 3c8u_A Fructokinase; YP_612366 95.9 0.0064 2.2E-07 56.9 4.8 40 195-234 8-47 (208)
239 1qhx_A CPT, protein (chloramph 95.9 0.0035 1.2E-07 56.9 2.8 25 210-234 4-28 (178)
240 1zu4_A FTSY; GTPase, signal re 95.9 0.027 9.2E-07 56.4 9.5 36 208-244 104-139 (320)
241 3hws_A ATP-dependent CLP prote 95.8 0.0057 2E-07 62.7 4.6 47 187-233 16-75 (363)
242 2b8t_A Thymidine kinase; deoxy 95.8 0.0077 2.6E-07 56.9 5.0 105 209-323 12-126 (223)
243 2ast_B S-phase kinase-associat 95.8 0.0015 5.1E-08 66.0 -0.3 81 520-604 117-206 (336)
244 2orw_A Thymidine kinase; TMTK, 95.7 0.0025 8.5E-08 58.5 1.1 26 210-235 4-29 (184)
245 3kb2_A SPBC2 prophage-derived 95.7 0.0052 1.8E-07 55.2 3.0 25 210-234 2-26 (173)
246 3sr0_A Adenylate kinase; phosp 95.7 0.019 6.5E-07 53.5 6.9 23 211-233 2-24 (206)
247 3hyn_A Putative signal transdu 95.6 0.041 1.4E-06 48.9 8.5 79 29-110 31-118 (189)
248 2ast_B S-phase kinase-associat 95.6 0.0018 6.3E-08 65.3 -0.4 92 520-613 141-244 (336)
249 1xp8_A RECA protein, recombina 95.6 0.072 2.5E-06 54.3 11.4 50 195-244 59-109 (366)
250 1odf_A YGR205W, hypothetical 3 95.5 0.015 5.2E-07 57.4 6.0 30 206-235 28-57 (290)
251 3e70_C DPA, signal recognition 95.5 0.04 1.4E-06 55.3 9.0 30 207-236 127-156 (328)
252 2zr9_A Protein RECA, recombina 95.5 0.042 1.4E-06 55.8 9.3 49 196-244 47-96 (349)
253 1u94_A RECA protein, recombina 95.5 0.045 1.5E-06 55.6 9.4 49 196-244 49-98 (356)
254 3tlx_A Adenylate kinase 2; str 95.4 0.015 5.2E-07 55.8 5.5 41 193-233 13-53 (243)
255 3vaa_A Shikimate kinase, SK; s 95.4 0.0079 2.7E-07 55.8 3.3 25 209-233 25-49 (199)
256 1nks_A Adenylate kinase; therm 95.4 0.014 4.9E-07 53.4 5.1 26 210-235 2-27 (194)
257 3trf_A Shikimate kinase, SK; a 95.4 0.0073 2.5E-07 55.1 3.1 25 209-233 5-29 (185)
258 3io5_A Recombination and repai 95.4 0.074 2.5E-06 52.6 10.3 34 211-244 30-65 (333)
259 1g8p_A Magnesium-chelatase 38 95.4 0.01 3.4E-07 60.3 4.4 49 184-234 22-70 (350)
260 1ly1_A Polynucleotide kinase; 95.4 0.0087 3E-07 54.2 3.5 22 210-231 3-24 (181)
261 1ex7_A Guanylate kinase; subst 95.4 0.0049 1.7E-07 56.5 1.7 28 210-237 2-29 (186)
262 1vma_A Cell division protein F 95.3 0.085 2.9E-06 52.3 10.6 29 208-236 103-131 (306)
263 1z7x_W Ribonuclease inhibitor; 95.3 0.0039 1.3E-07 65.9 0.9 84 521-606 28-126 (461)
264 3uie_A Adenylyl-sulfate kinase 95.3 0.02 6.9E-07 53.0 5.7 27 208-234 24-50 (200)
265 3goz_A Leucine-rich repeat-con 95.3 0.0099 3.4E-07 60.8 3.8 85 521-610 22-126 (362)
266 3bh0_A DNAB-like replicative h 95.2 0.045 1.5E-06 54.7 8.6 63 196-265 56-118 (315)
267 3lw7_A Adenylate kinase relate 95.2 0.0085 2.9E-07 53.9 2.9 20 210-229 2-21 (179)
268 2xxa_A Signal recognition part 95.2 0.095 3.2E-06 54.7 11.0 29 208-236 99-127 (433)
269 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.012 4.3E-07 62.6 4.2 44 186-233 22-65 (500)
270 3goz_A Leucine-rich repeat-con 95.1 0.012 4E-07 60.2 3.9 79 522-606 52-151 (362)
271 2rhm_A Putative kinase; P-loop 95.1 0.013 4.5E-07 53.7 3.8 25 209-233 5-29 (193)
272 2ga8_A Hypothetical 39.9 kDa p 95.1 0.022 7.6E-07 57.4 5.6 47 191-237 4-52 (359)
273 1zp6_A Hypothetical protein AT 95.1 0.012 4E-07 54.0 3.4 24 209-232 9-32 (191)
274 1zuh_A Shikimate kinase; alpha 95.1 0.012 4E-07 52.9 3.2 26 209-234 7-32 (168)
275 2yvu_A Probable adenylyl-sulfa 95.0 0.025 8.5E-07 51.6 5.4 28 208-235 12-39 (186)
276 3p32_A Probable GTPase RV1496/ 95.0 0.031 1.1E-06 57.0 6.6 42 195-236 65-106 (355)
277 1kht_A Adenylate kinase; phosp 95.0 0.014 4.7E-07 53.4 3.7 26 210-235 4-29 (192)
278 1kgd_A CASK, peripheral plasma 95.0 0.013 4.4E-07 53.4 3.4 26 209-234 5-30 (180)
279 1kag_A SKI, shikimate kinase I 95.0 0.011 3.7E-07 53.3 2.8 24 210-233 5-28 (173)
280 3iij_A Coilin-interacting nucl 95.0 0.0097 3.3E-07 54.1 2.4 25 209-233 11-35 (180)
281 1xjc_A MOBB protein homolog; s 95.0 0.025 8.5E-07 50.8 5.0 28 209-236 4-31 (169)
282 1tue_A Replication protein E1; 94.9 0.02 6.9E-07 52.8 4.3 41 193-234 43-83 (212)
283 2ze6_A Isopentenyl transferase 94.9 0.015 5.2E-07 56.2 3.7 24 210-233 2-25 (253)
284 3t61_A Gluconokinase; PSI-biol 94.8 0.012 4.2E-07 54.5 2.8 25 209-233 18-42 (202)
285 1nn5_A Similar to deoxythymidy 94.8 0.025 8.6E-07 52.8 5.0 29 209-237 9-37 (215)
286 1ukz_A Uridylate kinase; trans 94.8 0.019 6.5E-07 53.2 4.1 26 208-233 14-39 (203)
287 2jaq_A Deoxyguanosine kinase; 94.8 0.014 4.9E-07 53.9 3.2 24 211-234 2-25 (205)
288 2plr_A DTMP kinase, probable t 94.8 0.028 9.5E-07 52.3 5.2 27 210-236 5-31 (213)
289 2q6t_A DNAB replication FORK h 94.8 0.18 6.2E-06 52.9 12.0 64 196-266 188-252 (444)
290 1via_A Shikimate kinase; struc 94.8 0.015 5.1E-07 52.6 3.1 23 211-233 6-28 (175)
291 1tev_A UMP-CMP kinase; ploop, 94.8 0.018 6.1E-07 52.8 3.7 24 210-233 4-27 (196)
292 1knq_A Gluconate kinase; ALFA/ 94.8 0.018 6.2E-07 51.9 3.6 25 209-233 8-32 (175)
293 1gvn_B Zeta; postsegregational 94.7 0.026 8.9E-07 55.6 5.0 26 208-233 32-57 (287)
294 3upu_A ATP-dependent DNA helic 94.7 0.096 3.3E-06 55.4 9.7 28 211-238 47-74 (459)
295 2c95_A Adenylate kinase 1; tra 94.7 0.016 5.3E-07 53.3 3.2 25 209-233 9-33 (196)
296 2iyv_A Shikimate kinase, SK; t 94.7 0.012 4.2E-07 53.6 2.4 23 211-233 4-26 (184)
297 1y63_A LMAJ004144AAA protein; 94.7 0.018 6.2E-07 52.6 3.5 24 209-232 10-33 (184)
298 3a00_A Guanylate kinase, GMP k 94.7 0.015 5E-07 53.3 2.8 29 210-238 2-30 (186)
299 2qor_A Guanylate kinase; phosp 94.7 0.014 4.8E-07 54.3 2.8 25 209-233 12-36 (204)
300 3tau_A Guanylate kinase, GMP k 94.7 0.017 5.8E-07 54.0 3.3 27 208-234 7-33 (208)
301 4eun_A Thermoresistant glucoki 94.7 0.017 5.9E-07 53.5 3.4 25 209-233 29-53 (200)
302 2vli_A Antibiotic resistance p 94.6 0.014 4.7E-07 53.1 2.6 26 209-234 5-30 (183)
303 1e6c_A Shikimate kinase; phosp 94.6 0.014 4.9E-07 52.4 2.6 24 210-233 3-26 (173)
304 2z0h_A DTMP kinase, thymidylat 94.6 0.05 1.7E-06 49.9 6.5 25 211-235 2-26 (197)
305 3cm0_A Adenylate kinase; ATP-b 94.6 0.022 7.6E-07 51.9 3.8 24 210-233 5-28 (186)
306 4a1f_A DNAB helicase, replicat 94.6 0.07 2.4E-06 53.7 7.8 65 195-266 33-97 (338)
307 3ice_A Transcription terminati 94.6 0.053 1.8E-06 55.1 6.7 29 209-237 174-202 (422)
308 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.021 7.2E-07 55.4 3.8 26 209-234 4-29 (260)
309 1uj2_A Uridine-cytidine kinase 94.5 0.022 7.6E-07 54.9 3.8 28 207-234 20-47 (252)
310 2bwj_A Adenylate kinase 5; pho 94.5 0.018 6.3E-07 53.0 3.1 24 210-233 13-36 (199)
311 1qf9_A UMP/CMP kinase, protein 94.5 0.022 7.5E-07 52.1 3.6 25 209-233 6-30 (194)
312 1uf9_A TT1252 protein; P-loop, 94.5 0.022 7.6E-07 52.6 3.7 26 207-232 6-31 (203)
313 2bdt_A BH3686; alpha-beta prot 94.5 0.021 7.3E-07 52.2 3.5 31 210-244 3-33 (189)
314 2dr3_A UPF0273 protein PH0284; 94.5 0.034 1.2E-06 53.0 5.1 36 209-244 23-58 (247)
315 3umf_A Adenylate kinase; rossm 94.5 0.026 8.8E-07 53.0 4.0 27 207-233 27-53 (217)
316 2pt5_A Shikimate kinase, SK; a 94.4 0.022 7.6E-07 50.9 3.4 23 211-233 2-24 (168)
317 1sky_E F1-ATPase, F1-ATP synth 94.4 0.078 2.7E-06 55.5 7.9 30 211-240 153-182 (473)
318 2wwf_A Thymidilate kinase, put 94.4 0.023 8E-07 52.9 3.7 28 209-236 10-37 (212)
319 3tqc_A Pantothenate kinase; bi 94.4 0.034 1.2E-06 55.5 5.0 47 188-234 69-117 (321)
320 2hf9_A Probable hydrogenase ni 94.4 0.033 1.1E-06 52.4 4.7 40 194-235 25-64 (226)
321 3tr0_A Guanylate kinase, GMP k 94.4 0.021 7.2E-07 52.9 3.2 24 210-233 8-31 (205)
322 2cdn_A Adenylate kinase; phosp 94.4 0.025 8.7E-07 52.3 3.7 25 209-233 20-44 (201)
323 2wsm_A Hydrogenase expression/ 94.3 0.036 1.2E-06 52.0 4.8 45 190-236 13-57 (221)
324 1g41_A Heat shock protein HSLU 94.3 0.032 1.1E-06 58.2 4.7 49 186-234 15-75 (444)
325 1aky_A Adenylate kinase; ATP:A 94.3 0.021 7.3E-07 53.7 3.2 25 209-233 4-28 (220)
326 2j41_A Guanylate kinase; GMP, 94.3 0.023 7.8E-07 52.7 3.3 24 210-233 7-30 (207)
327 2pbr_A DTMP kinase, thymidylat 94.3 0.025 8.6E-07 51.7 3.5 24 211-234 2-25 (195)
328 1cke_A CK, MSSA, protein (cyti 94.3 0.024 8.2E-07 53.5 3.4 24 210-233 6-29 (227)
329 3ney_A 55 kDa erythrocyte memb 94.2 0.026 8.8E-07 52.1 3.4 27 208-234 18-44 (197)
330 3asz_A Uridine kinase; cytidin 94.2 0.026 8.9E-07 52.6 3.6 27 208-234 5-31 (211)
331 2if2_A Dephospho-COA kinase; a 94.2 0.023 8E-07 52.6 3.2 21 211-231 3-23 (204)
332 2qt1_A Nicotinamide riboside k 94.2 0.027 9.1E-07 52.4 3.5 25 208-232 20-44 (207)
333 2bbw_A Adenylate kinase 4, AK4 94.2 0.026 8.8E-07 54.2 3.5 25 209-233 27-51 (246)
334 1puj_A YLQF, conserved hypothe 94.1 0.52 1.8E-05 46.0 12.9 36 58-94 13-48 (282)
335 2p5t_B PEZT; postsegregational 94.0 0.046 1.6E-06 52.7 4.9 26 208-233 31-56 (253)
336 3fb4_A Adenylate kinase; psych 94.0 0.03 1E-06 52.5 3.5 23 211-233 2-24 (216)
337 2grj_A Dephospho-COA kinase; T 94.0 0.035 1.2E-06 51.1 3.8 25 208-232 11-35 (192)
338 1jjv_A Dephospho-COA kinase; P 94.0 0.029 9.8E-07 52.1 3.3 22 210-231 3-24 (206)
339 1n0w_A DNA repair protein RAD5 94.0 0.043 1.5E-06 52.2 4.6 48 197-244 12-65 (243)
340 2ewv_A Twitching motility prot 93.9 0.031 1.1E-06 57.3 3.7 107 209-323 136-244 (372)
341 2pez_A Bifunctional 3'-phospho 93.9 0.037 1.3E-06 50.1 3.8 26 209-234 5-30 (179)
342 4a74_A DNA repair and recombin 93.9 0.032 1.1E-06 52.7 3.5 26 208-233 24-49 (231)
343 1gtv_A TMK, thymidylate kinase 93.9 0.019 6.6E-07 53.6 1.9 25 211-235 2-26 (214)
344 3fwy_A Light-independent proto 93.9 0.059 2E-06 53.7 5.6 37 207-243 46-82 (314)
345 1lvg_A Guanylate kinase, GMP k 93.9 0.024 8.1E-07 52.5 2.5 25 210-234 5-29 (198)
346 3dl0_A Adenylate kinase; phosp 93.9 0.032 1.1E-06 52.2 3.5 23 211-233 2-24 (216)
347 1zak_A Adenylate kinase; ATP:A 93.9 0.025 8.4E-07 53.4 2.6 26 209-234 5-30 (222)
348 1z7x_W Ribonuclease inhibitor; 93.9 0.026 8.8E-07 59.5 3.0 86 522-607 86-184 (461)
349 1rj9_A FTSY, signal recognitio 93.9 0.053 1.8E-06 53.8 5.1 36 208-244 101-136 (304)
350 4gp7_A Metallophosphoesterase; 93.9 0.027 9.4E-07 50.7 2.8 22 209-230 9-30 (171)
351 3bgw_A DNAB-like replicative h 93.8 0.29 1E-05 51.2 11.1 49 195-244 184-232 (444)
352 2v3c_C SRP54, signal recogniti 93.8 0.16 5.4E-06 53.0 8.9 28 209-236 99-126 (432)
353 1zd8_A GTP:AMP phosphotransfer 93.8 0.032 1.1E-06 52.8 3.4 25 209-233 7-31 (227)
354 3sb4_A Hypothetical leucine ri 93.8 0.11 3.7E-06 52.1 7.4 83 521-611 226-315 (329)
355 3kl4_A SRP54, signal recogniti 93.8 0.081 2.8E-06 55.1 6.5 29 208-236 96-124 (433)
356 1j8m_F SRP54, signal recogniti 93.7 0.099 3.4E-06 51.7 6.7 36 209-244 98-133 (297)
357 2ehv_A Hypothetical protein PH 93.7 0.06 2E-06 51.4 5.1 36 209-244 30-66 (251)
358 1m7g_A Adenylylsulfate kinase; 93.7 0.048 1.6E-06 50.9 4.2 26 209-234 25-50 (211)
359 2jeo_A Uridine-cytidine kinase 93.6 0.043 1.5E-06 52.6 3.8 26 208-233 24-49 (245)
360 3be4_A Adenylate kinase; malar 93.6 0.036 1.2E-06 52.1 3.1 24 210-233 6-29 (217)
361 1v5w_A DMC1, meiotic recombina 93.6 0.17 5.6E-06 51.2 8.3 48 197-244 110-163 (343)
362 4e22_A Cytidylate kinase; P-lo 93.5 0.04 1.4E-06 53.1 3.4 25 209-233 27-51 (252)
363 2v54_A DTMP kinase, thymidylat 93.5 0.04 1.4E-06 50.9 3.3 24 210-233 5-28 (204)
364 3aez_A Pantothenate kinase; tr 93.5 0.042 1.4E-06 54.8 3.6 28 207-234 88-115 (312)
365 2f6r_A COA synthase, bifunctio 93.4 0.043 1.5E-06 53.9 3.6 24 208-231 74-97 (281)
366 1np6_A Molybdopterin-guanine d 93.4 0.078 2.7E-06 47.9 5.0 27 209-235 6-32 (174)
367 2zts_A Putative uncharacterize 93.4 0.068 2.3E-06 51.0 4.9 36 209-244 30-66 (251)
368 1vht_A Dephospho-COA kinase; s 93.4 0.049 1.7E-06 51.1 3.8 23 209-231 4-26 (218)
369 2z43_A DNA repair and recombin 93.4 0.1 3.6E-06 52.3 6.4 36 209-244 107-148 (324)
370 3nwj_A ATSK2; P loop, shikimat 93.4 0.033 1.1E-06 53.6 2.6 25 210-234 49-73 (250)
371 1znw_A Guanylate kinase, GMP k 93.4 0.04 1.4E-06 51.3 3.1 24 210-233 21-44 (207)
372 3b9q_A Chloroplast SRP recepto 93.4 0.08 2.7E-06 52.5 5.4 36 208-244 99-134 (302)
373 1u0j_A DNA replication protein 93.4 0.072 2.5E-06 51.4 4.9 38 195-232 90-127 (267)
374 3zvl_A Bifunctional polynucleo 93.3 0.13 4.4E-06 53.6 7.2 26 208-233 257-282 (416)
375 2eyu_A Twitching motility prot 93.3 0.088 3E-06 51.0 5.5 108 208-324 24-134 (261)
376 3d3q_A TRNA delta(2)-isopenten 93.3 0.047 1.6E-06 54.8 3.7 24 210-233 8-31 (340)
377 3ake_A Cytidylate kinase; CMP 93.3 0.047 1.6E-06 50.5 3.4 23 211-233 4-26 (208)
378 2ck3_D ATP synthase subunit be 93.2 0.16 5.4E-06 53.1 7.5 52 210-264 154-206 (482)
379 2r6a_A DNAB helicase, replicat 93.2 0.74 2.5E-05 48.4 13.0 37 208-244 202-239 (454)
380 3r20_A Cytidylate kinase; stru 93.2 0.048 1.6E-06 51.8 3.4 24 210-233 10-33 (233)
381 1a7j_A Phosphoribulokinase; tr 93.2 0.034 1.2E-06 54.9 2.5 27 208-234 4-30 (290)
382 1htw_A HI0065; nucleotide-bind 93.2 0.055 1.9E-06 48.0 3.6 26 208-233 32-57 (158)
383 2p67_A LAO/AO transport system 93.2 0.14 4.7E-06 51.8 7.0 30 206-235 53-82 (341)
384 4edh_A DTMP kinase, thymidylat 93.2 0.15 5.2E-06 47.6 6.8 28 209-236 6-33 (213)
385 1z6g_A Guanylate kinase; struc 93.2 0.036 1.2E-06 52.2 2.5 25 209-233 23-47 (218)
386 2r8r_A Sensor protein; KDPD, P 93.2 0.11 3.9E-06 48.6 5.8 35 210-244 7-41 (228)
387 1s96_A Guanylate kinase, GMP k 93.2 0.044 1.5E-06 51.6 3.0 26 209-234 16-41 (219)
388 3crm_A TRNA delta(2)-isopenten 93.2 0.051 1.8E-06 54.1 3.6 24 210-233 6-29 (323)
389 1e4v_A Adenylate kinase; trans 93.2 0.051 1.7E-06 50.8 3.5 23 211-233 2-24 (214)
390 3k1j_A LON protease, ATP-depen 93.2 0.045 1.5E-06 60.1 3.6 47 184-234 39-85 (604)
391 4eaq_A DTMP kinase, thymidylat 93.1 0.11 3.9E-06 49.1 6.0 28 208-235 25-52 (229)
392 2xb4_A Adenylate kinase; ATP-b 93.1 0.05 1.7E-06 51.3 3.4 23 211-233 2-24 (223)
393 1ak2_A Adenylate kinase isoenz 93.1 0.052 1.8E-06 51.6 3.5 24 210-233 17-40 (233)
394 3foz_A TRNA delta(2)-isopenten 93.1 0.063 2.2E-06 52.9 4.1 26 208-233 9-34 (316)
395 3un9_A NLR family member X1; l 93.0 0.028 9.6E-07 57.7 1.6 86 521-606 155-252 (372)
396 2px0_A Flagellar biosynthesis 93.0 0.089 3E-06 52.0 5.0 27 209-235 105-131 (296)
397 1cr0_A DNA primase/helicase; R 92.9 0.091 3.1E-06 51.8 5.1 36 209-244 35-71 (296)
398 3rw6_A Nuclear RNA export fact 92.9 0.064 2.2E-06 52.0 3.9 77 521-600 170-258 (267)
399 3ogk_B Coronatine-insensitive 92.9 0.04 1.4E-06 60.2 2.7 87 520-607 435-527 (592)
400 2j9r_A Thymidine kinase; TK1, 92.9 0.17 5.9E-06 47.0 6.5 107 209-324 28-139 (214)
401 3cmu_A Protein RECA, recombina 92.9 0.15 5.1E-06 62.5 7.6 48 197-244 1414-1462(2050)
402 3e4g_A ATP synthase subunit S, 92.9 0.061 2.1E-06 48.5 3.3 57 548-606 61-128 (176)
403 3a8t_A Adenylate isopentenyltr 92.8 0.041 1.4E-06 55.1 2.3 25 209-233 40-64 (339)
404 2f1r_A Molybdopterin-guanine d 92.8 0.04 1.4E-06 49.7 2.1 26 210-235 3-28 (171)
405 3e1s_A Exodeoxyribonuclease V, 92.8 0.26 9E-06 53.4 8.9 99 210-322 205-315 (574)
406 1yrb_A ATP(GTP)binding protein 92.8 0.11 3.8E-06 50.0 5.4 27 208-234 13-39 (262)
407 2og2_A Putative signal recogni 92.8 0.11 3.6E-06 52.8 5.4 36 208-244 156-191 (359)
408 3exa_A TRNA delta(2)-isopenten 92.8 0.061 2.1E-06 53.1 3.5 24 210-233 4-27 (322)
409 2qmh_A HPR kinase/phosphorylas 92.7 0.049 1.7E-06 50.0 2.6 23 210-232 35-57 (205)
410 3hjn_A DTMP kinase, thymidylat 92.7 0.2 6.7E-06 46.2 6.7 34 211-244 2-35 (197)
411 1q57_A DNA primase/helicase; d 92.7 0.77 2.6E-05 49.0 12.3 53 208-266 241-294 (503)
412 3lnc_A Guanylate kinase, GMP k 92.7 0.038 1.3E-06 52.4 1.8 24 210-233 28-52 (231)
413 1ltq_A Polynucleotide kinase; 92.7 0.066 2.3E-06 53.0 3.7 23 210-232 3-25 (301)
414 2i3b_A HCR-ntpase, human cance 92.6 0.062 2.1E-06 49.3 3.1 24 211-234 3-26 (189)
415 3l0o_A Transcription terminati 92.6 0.24 8.2E-06 50.2 7.5 29 209-237 175-203 (427)
416 2j37_W Signal recognition part 92.6 0.17 5.8E-06 53.8 6.9 29 208-236 100-128 (504)
417 3v9p_A DTMP kinase, thymidylat 92.6 0.16 5.6E-06 47.9 6.0 28 209-236 25-52 (227)
418 1svm_A Large T antigen; AAA+ f 92.5 0.11 3.8E-06 53.1 5.1 27 207-233 167-193 (377)
419 1sq5_A Pantothenate kinase; P- 92.5 0.073 2.5E-06 53.0 3.7 28 207-234 78-105 (308)
420 1fx0_B ATP synthase beta chain 92.5 0.2 6.7E-06 52.6 7.0 52 210-264 166-218 (498)
421 2pt7_A CAG-ALFA; ATPase, prote 92.4 0.15 5.1E-06 51.2 6.0 102 210-322 172-274 (330)
422 3cmw_A Protein RECA, recombina 92.4 0.29 1E-05 59.2 9.2 92 195-295 717-820 (1706)
423 1ls1_A Signal recognition part 92.3 0.15 5.1E-06 50.4 5.6 36 208-244 97-132 (295)
424 3ld9_A DTMP kinase, thymidylat 92.3 0.21 7.1E-06 47.0 6.3 28 208-235 20-47 (223)
425 3b85_A Phosphate starvation-in 92.2 0.066 2.2E-06 49.9 2.8 23 210-232 23-45 (208)
426 2yhs_A FTSY, cell division pro 92.2 0.14 4.6E-06 54.0 5.4 36 208-244 292-327 (503)
427 3end_A Light-independent proto 92.2 0.15 5.1E-06 50.5 5.6 38 207-244 39-76 (307)
428 2onk_A Molybdate/tungstate ABC 92.1 0.074 2.5E-06 50.8 3.0 23 210-232 25-47 (240)
429 2i1q_A DNA repair and recombin 92.1 0.21 7E-06 50.0 6.5 37 197-233 86-122 (322)
430 1nlf_A Regulatory protein REPA 92.1 0.14 4.8E-06 50.0 5.2 26 210-235 31-56 (279)
431 2qm8_A GTPase/ATPase; G protei 92.1 0.23 8E-06 50.0 6.9 29 207-235 53-81 (337)
432 4tmk_A Protein (thymidylate ki 92.0 0.22 7.5E-06 46.5 6.2 27 210-236 4-30 (213)
433 1q3t_A Cytidylate kinase; nucl 92.0 0.091 3.1E-06 49.9 3.6 26 208-233 15-40 (236)
434 1cp2_A CP2, nitrogenase iron p 92.0 0.16 5.3E-06 49.2 5.4 34 210-243 2-35 (269)
435 3lv8_A DTMP kinase, thymidylat 92.0 0.22 7.6E-06 47.3 6.2 35 209-243 27-62 (236)
436 3tif_A Uncharacterized ABC tra 91.9 0.068 2.3E-06 50.9 2.6 22 210-231 32-53 (235)
437 2ocp_A DGK, deoxyguanosine kin 91.9 0.098 3.4E-06 49.9 3.7 26 209-234 2-27 (241)
438 2pcj_A ABC transporter, lipopr 91.8 0.068 2.3E-06 50.5 2.5 22 210-231 31-52 (224)
439 1g8f_A Sulfate adenylyltransfe 91.8 0.14 5E-06 54.3 5.2 47 189-235 375-421 (511)
440 2afh_E Nitrogenase iron protei 91.8 0.17 5.9E-06 49.6 5.5 28 209-236 2-29 (289)
441 3eph_A TRNA isopentenyltransfe 91.8 0.099 3.4E-06 53.6 3.7 24 210-233 3-26 (409)
442 2dyk_A GTP-binding protein; GT 91.8 0.11 3.6E-06 45.6 3.5 23 210-232 2-24 (161)
443 3io3_A DEHA2D07832P; chaperone 91.8 0.18 6.3E-06 50.9 5.7 38 207-244 16-55 (348)
444 1oix_A RAS-related protein RAB 91.8 0.091 3.1E-06 48.0 3.2 24 209-232 29-52 (191)
445 3ug7_A Arsenical pump-driving 91.8 0.31 1.1E-05 49.3 7.5 39 205-243 22-60 (349)
446 1ny5_A Transcriptional regulat 91.7 0.31 1E-05 50.1 7.5 48 186-233 137-184 (387)
447 1pzn_A RAD51, DNA repair and r 91.7 0.11 3.8E-06 52.6 4.0 36 198-233 120-155 (349)
448 2axn_A 6-phosphofructo-2-kinas 91.7 0.18 6E-06 54.1 5.7 31 208-238 34-64 (520)
449 3ogk_B Coronatine-insensitive 91.6 0.027 9.1E-07 61.6 -0.8 38 571-608 190-235 (592)
450 3zq6_A Putative arsenical pump 91.6 0.23 8E-06 49.7 6.2 36 209-244 14-49 (324)
451 2wji_A Ferrous iron transport 91.6 0.11 3.6E-06 46.1 3.3 22 210-231 4-25 (165)
452 4hlc_A DTMP kinase, thymidylat 91.5 0.16 5.6E-06 47.1 4.6 29 210-238 3-31 (205)
453 1tq4_A IIGP1, interferon-induc 91.5 0.11 3.8E-06 53.7 3.9 35 197-231 57-91 (413)
454 2cbz_A Multidrug resistance-as 91.5 0.081 2.8E-06 50.4 2.6 23 210-232 32-54 (237)
455 2f9l_A RAB11B, member RAS onco 91.5 0.097 3.3E-06 48.1 3.0 24 209-232 5-28 (199)
456 2d2e_A SUFC protein; ABC-ATPas 91.4 0.099 3.4E-06 50.3 3.1 22 210-231 30-51 (250)
457 2ged_A SR-beta, signal recogni 91.4 0.13 4.6E-06 46.7 3.9 25 208-232 47-71 (193)
458 3gfo_A Cobalt import ATP-bindi 91.4 0.084 2.9E-06 51.5 2.6 22 210-231 35-56 (275)
459 2zej_A Dardarin, leucine-rich 91.4 0.081 2.8E-06 47.9 2.3 21 211-231 4-24 (184)
460 3un9_A NLR family member X1; l 91.3 0.072 2.4E-06 54.6 2.2 63 545-607 152-225 (372)
461 2fz4_A DNA repair protein RAD2 91.3 1.5 5.1E-05 41.4 11.4 39 190-233 94-132 (237)
462 1b0u_A Histidine permease; ABC 91.3 0.086 2.9E-06 51.1 2.6 23 209-231 32-54 (262)
463 4b3f_X DNA-binding protein smu 91.3 0.76 2.6E-05 50.7 10.5 48 192-244 192-239 (646)
464 1ji0_A ABC transporter; ATP bi 91.2 0.09 3.1E-06 50.2 2.6 22 210-231 33-54 (240)
465 2zu0_C Probable ATP-dependent 91.2 0.1 3.6E-06 50.6 3.1 22 210-231 47-68 (267)
466 1g6h_A High-affinity branched- 91.1 0.092 3.2E-06 50.7 2.6 22 210-231 34-55 (257)
467 1mv5_A LMRA, multidrug resista 91.1 0.1 3.4E-06 50.0 2.8 23 209-231 28-50 (243)
468 4g1u_C Hemin import ATP-bindin 91.1 0.091 3.1E-06 51.0 2.5 22 210-231 38-59 (266)
469 3llm_A ATP-dependent RNA helic 91.1 2.2 7.4E-05 40.1 12.3 22 210-231 77-98 (235)
470 1sgw_A Putative ABC transporte 91.0 0.08 2.7E-06 49.6 2.0 23 210-232 36-58 (214)
471 4akg_A Glutathione S-transfera 91.0 0.63 2.2E-05 59.1 10.4 150 210-374 1268-1452(2695)
472 2pze_A Cystic fibrosis transme 91.0 0.097 3.3E-06 49.6 2.6 23 210-232 35-57 (229)
473 2olj_A Amino acid ABC transpor 91.0 0.096 3.3E-06 50.7 2.6 23 209-231 50-72 (263)
474 2ff7_A Alpha-hemolysin translo 91.0 0.097 3.3E-06 50.2 2.6 22 210-231 36-57 (247)
475 3iqw_A Tail-anchored protein t 91.0 0.24 8.1E-06 49.8 5.5 38 207-244 14-51 (334)
476 2ce2_X GTPase HRAS; signaling 90.9 0.12 4E-06 45.3 2.9 22 211-232 5-26 (166)
477 3cnl_A YLQF, putative uncharac 90.9 0.6 2.1E-05 45.0 8.2 29 58-86 11-39 (262)
478 3cmu_A Protein RECA, recombina 90.9 0.51 1.7E-05 58.0 9.1 57 188-244 361-418 (2050)
479 4dzz_A Plasmid partitioning pr 90.9 0.27 9.3E-06 45.1 5.6 35 210-244 2-37 (206)
480 1io0_A Tropomodulin; LRR prote 90.9 0.081 2.8E-06 48.2 1.8 65 542-606 30-106 (185)
481 1vpl_A ABC transporter, ATP-bi 90.8 0.1 3.5E-06 50.3 2.6 23 209-231 41-63 (256)
482 3cr8_A Sulfate adenylyltranfer 90.8 0.21 7.1E-06 53.8 5.2 27 209-235 369-395 (552)
483 2ghi_A Transport protein; mult 90.7 0.1 3.6E-06 50.4 2.6 23 210-232 47-69 (260)
484 1z2a_A RAS-related protein RAB 90.7 0.17 5.7E-06 44.6 3.8 24 209-232 5-28 (168)
485 2v9p_A Replication protein E1; 90.7 0.19 6.4E-06 49.7 4.4 26 208-233 125-150 (305)
486 2p1m_B Transport inhibitor res 90.7 0.12 4.1E-06 56.2 3.4 82 521-604 105-195 (594)
487 3kjh_A CO dehydrogenase/acetyl 90.7 0.23 7.7E-06 47.3 4.9 32 212-243 3-34 (254)
488 2www_A Methylmalonic aciduria 90.7 0.27 9.3E-06 49.7 5.7 28 208-235 73-100 (349)
489 2qi9_C Vitamin B12 import ATP- 90.7 0.11 3.7E-06 49.9 2.6 24 210-233 27-50 (249)
490 2ixe_A Antigen peptide transpo 90.7 0.11 3.7E-06 50.7 2.6 23 209-231 45-67 (271)
491 3fdi_A Uncharacterized protein 90.6 0.14 4.6E-06 47.5 3.2 25 210-234 7-31 (201)
492 2wjg_A FEOB, ferrous iron tran 90.6 0.16 5.4E-06 45.9 3.6 24 209-232 7-30 (188)
493 4gzl_A RAS-related C3 botulinu 90.6 0.15 5.1E-06 47.1 3.4 41 190-232 13-53 (204)
494 2ffh_A Protein (FFH); SRP54, s 90.6 0.27 9.1E-06 51.1 5.6 29 208-236 97-125 (425)
495 1ypw_A Transitional endoplasmi 90.5 0.12 4.2E-06 58.5 3.3 150 185-353 476-661 (806)
496 1nij_A Hypothetical protein YJ 90.5 0.14 4.7E-06 51.2 3.3 25 208-232 3-27 (318)
497 2nq2_C Hypothetical ABC transp 90.5 0.11 3.9E-06 49.9 2.6 23 210-232 32-54 (253)
498 2hjg_A GTP-binding protein ENG 90.5 2.9 9.9E-05 43.5 13.7 25 208-232 174-198 (436)
499 2yz2_A Putative ABC transporte 90.5 0.11 3.9E-06 50.3 2.6 22 210-231 34-55 (266)
500 1bif_A 6-phosphofructo-2-kinas 90.4 0.26 8.9E-06 52.1 5.6 30 209-238 39-68 (469)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-45 Score=340.12 Aligned_cols=172 Identities=33% Similarity=0.616 Sum_probs=159.1
Q ss_pred CCCCCCCcccEEEcCccccCCCchHHHHHHHHhhCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhh
Q 037173 8 PPRNAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWC 86 (617)
Q Consensus 8 ~~~~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c 86 (617)
++..+.++|||||||+|+|++++|+.+|+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||++|++|.||
T Consensus 28 s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp ------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred cCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence 3456789999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-CCCEEEEEEeecCCCccccccccchhhHHHhhhhCh-hHHHHHHHHHHhhhccCCcCCCCCchhhH
Q 037173 87 LDELLKILECKHD-YGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGERYP-EKMQRWGNALTEAANLSGFDSHVIRPESK 164 (617)
Q Consensus 87 ~~El~~~~~~~~~-~~~~vipi~~~v~p~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~e~~ 164 (617)
++||++|++|.+. .+++|+||||+|+|++||+|+|.||++|.+|+.++. +++++|+.||.++++++||++.++..|++
T Consensus 108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 9999999999865 578999999999999999999999999999999875 68999999999999999999999888999
Q ss_pred HHHHHHhhhhccccc
Q 037173 165 LIEAIANGVLKRLDA 179 (617)
Q Consensus 165 ~i~~i~~~v~~~l~~ 179 (617)
++++|+++++++++.
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988753
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.4e-44 Score=396.12 Aligned_cols=292 Identities=16% Similarity=0.158 Sum_probs=235.3
Q ss_pred ccchhhHHHHHHHhhhc-CCCeEEEEEeccCCChhhHHHHHHHH----HhhhccCceEEEEechhhhcc--CCHHHHHHH
Q 037173 189 VGVAWRIKEIESLLCIR-SAGVYVLGIWGIGGIGKTTIAGAVFN----KISRCFEGSYFALDVREAEET--GRIKDLQKE 261 (617)
Q Consensus 189 vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~--~~~~~l~~~ 261 (617)
+||+.++++|.++|... ..+.++|+|+||||+||||||+++|+ ++..+|+.++|+. ++.. .+...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999999754 34589999999999999999999997 5888999999997 5444 378899999
Q ss_pred HHHHHhcCCC-------CCC-----HHHHHHHHcCC-CeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcccccc
Q 037173 262 LLSKLLNDGN-------ARN-----VESQLNRLARK-KVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQVLEN 328 (617)
Q Consensus 262 l~~~l~~~~~-------~~~-----~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~ 328 (617)
++.++..... +.. ...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999876421 111 47788889996 999999999998765 2221 279999999999999887
Q ss_pred cC-cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHHH-HccC
Q 037173 329 CW-VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMRK-LEII 406 (617)
Q Consensus 329 ~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~~-l~~~ 406 (617)
++ ...+|+|++|+.++|++||.+++|.... .+...+++++|+++|+|+||||+++|+.|+.+.. +|...+.. ++..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 75 4468999999999999999999876543 3678889999999999999999999999987743 33333322 3332
Q ss_pred CCchHHHHHHHcHhcCChhHHHHHh-----------hhhcccCCcCHHHHHHhHhhc--CCch-----------HHhHHH
Q 037173 407 PHVDILKVLKISYDSLDDSQKNVFL-----------DIACLLEGEHRDEVTSFFDAS--GFQA-----------KIELSV 462 (617)
Q Consensus 407 ~~~~i~~~l~~sy~~L~~~~k~~fl-----------~la~fp~~~~~~~L~~~w~~~--g~~~-----------~~~l~~ 462 (617)
...++..++..||+.||+++|.||+ |||+||++.+.+ +.+|+++ |++. ..++++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 4556778888899999989999998 999999996666 8899998 6653 237999
Q ss_pred HhhCCCceEe----CCEEEecHHHHHHHHHHHhhcC
Q 037173 463 LEDKSLITCL----NNQIRMHDLLRDMGREIVRNES 494 (617)
Q Consensus 463 L~~~sLi~~~----~~~~~mHdlv~~~a~~~~~~e~ 494 (617)
|+++||++.. ..+|+|||+||++|++++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999986 2479999999999998887665
No 3
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-45 Score=332.72 Aligned_cols=170 Identities=42% Similarity=0.706 Sum_probs=143.6
Q ss_pred CCCCcccEEEcCccccCCCchHHHHHHHHhhCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhHHH
Q 037173 11 NAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCLDE 89 (617)
Q Consensus 11 ~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~E 89 (617)
+..++|||||||+|+|++++|+++|+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|+||++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 4578999999999999998999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCEEEEEEeecCCCccccccccchhhHHHhhhhC-hhHHHHHHHHHHhhhccCCcCCCCCchhhHHHHH
Q 037173 90 LLKILECKHDYGQIVIPVFYRVDPSHVRWKTGTFGDYFSELGERY-PEKMQRWGNALTEAANLSGFDSHVIRPESKLIEA 168 (617)
Q Consensus 90 l~~~~~~~~~~~~~vipi~~~v~p~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~e~~~i~~ 168 (617)
|++|++|.+..+++|+||||+|+|++||+|+|+||++|.+|+.+. .+++++|+.||.++++++|+++. ++|+++|++
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~ 161 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDK 161 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHH
Confidence 999999998889999999999999999999999999999998874 48899999999999999999984 679999999
Q ss_pred HHhhhhcccccccc
Q 037173 169 IANGVLKRLDATFQ 182 (617)
Q Consensus 169 i~~~v~~~l~~~~~ 182 (617)
|+++|.+++++++|
T Consensus 162 Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 162 IANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHTTCC----
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999987764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-38 Score=381.34 Aligned_cols=301 Identities=20% Similarity=0.291 Sum_probs=240.7
Q ss_pred cccccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH---hhhccCceE-EEEechhhhccCCH
Q 037173 180 TFQSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK---ISRCFEGSY-FALDVREAEETGRI 255 (617)
Q Consensus 180 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~-~~~~~~~~~~~~~~ 255 (617)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++ ...+|...+ |+. ++... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHH
Confidence 34567788999999999999999766677899999999999999999999987 355576666 555 33211 2234
Q ss_pred HHHHHHHHHHHhcCCC-----CCCHHHHHH----HHcC--CCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 256 KDLQKELLSKLLNDGN-----ARNVESQLN----RLAR--KKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~-----~~~~~~l~~----~L~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
...+..++..+..... ..+.+.+.+ .+.+ +|+||||||||+..+++.+ ++||+||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 4445566666654421 124444444 4444 4999999999998766553 68999999999999
Q ss_pred cccc-cCcceEEEecc-CChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHHH
Q 037173 325 VLEN-CWVNQIYRMKE-LVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMRK 402 (617)
Q Consensus 325 v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~~ 402 (617)
++.. +.....+++++ |+.+||++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ .+|...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8854 45667899996 99999999999988432 234456799999999999999999999998765 578888888
Q ss_pred HccCC-----------CchHHHHHHHcHhcCChhHHHHHhhhhcccCC--cCHHHHHHhHhhcCCchHHhHHHHhhCCCc
Q 037173 403 LEIIP-----------HVDILKVLKISYDSLDDSQKNVFLDIACLLEG--EHRDEVTSFFDASGFQAKIELSVLEDKSLI 469 (617)
Q Consensus 403 l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~--~~~~~L~~~w~~~g~~~~~~l~~L~~~sLi 469 (617)
+.... ...+..+|..||+.||+++|.||++||+||++ ++.+.++.+|.+++..++.++++|+++||+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 75432 14589999999999999999999999999987 789999999999888889999999999999
Q ss_pred eEe-CC---EEEecHHHHHHHHHHHhhc
Q 037173 470 TCL-NN---QIRMHDLLRDMGREIVRNE 493 (617)
Q Consensus 470 ~~~-~~---~~~mHdlv~~~a~~~~~~e 493 (617)
+.. ++ +|+||++||+++++.+.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 44 4999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-37 Score=347.51 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=215.8
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH--hhhccCc-eEEEEechhhhccCCHHHHHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK--ISRCFEG-SYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
+..|||+.++++|.++|... ++.++|+|+||||+||||||++++++ +..+|+. ++|+. ++...+...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHH
Confidence 34599999999999999742 34789999999999999999999974 7888997 67777 55556666776666
Q ss_pred HHHHhcC------CCC--C----C----HHHHHHHH---cCCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 263 LSKLLND------GNA--R----N----VESQLNRL---ARKKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 263 ~~~l~~~------~~~--~----~----~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
+..+... ... . + ...+++.| .++|+||||||||+.+.|+.+ .+||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccCh
Confidence 6543221 000 0 1 13445544 579999999999998888875 2789999999999
Q ss_pred ccccccCcceEEEec------cCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCC--CHHH
Q 037173 324 QVLENCWVNQIYRMK------ELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGR--SKEV 395 (617)
Q Consensus 324 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~--~~~~ 395 (617)
.++..+.....+.++ +|+.+||++||+... +.. ..++..++ |+|+||||+++|+.|+.+ +..+
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887644333456777 999999999999984 322 12233333 999999999999999876 6788
Q ss_pred HHHHHHHHccCCCchHHHHHHHcHhcCChhH-HHHHhhhhcccCC--cCHHHHHHhHhhcCC-chHHhHHHHhhCCCceE
Q 037173 396 WESAMRKLEIIPHVDILKVLKISYDSLDDSQ-KNVFLDIACLLEG--EHRDEVTSFFDASGF-QAKIELSVLEDKSLITC 471 (617)
Q Consensus 396 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~fp~~--~~~~~L~~~w~~~g~-~~~~~l~~L~~~sLi~~ 471 (617)
|... ....+..+|..||+.||+++ |.||++||+||++ ++.+.++.+|+++|. .+..++++|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8753 35689999999999999999 9999999999987 778889999998853 46789999999999998
Q ss_pred e--CCEEEecHHHHHHH
Q 037173 472 L--NNQIRMHDLLRDMG 486 (617)
Q Consensus 472 ~--~~~~~mHdlv~~~a 486 (617)
. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 56899999999854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=333.35 Aligned_cols=296 Identities=21% Similarity=0.274 Sum_probs=227.0
Q ss_pred cccccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh---hhccC-ceEEEEechhhhccCCH
Q 037173 180 TFQSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI---SRCFE-GSYFALDVREAEETGRI 255 (617)
Q Consensus 180 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 255 (617)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ..+|+ .++|+. +.... ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHH
Confidence 345677889999999999999997555668999999999999999999999763 67896 566766 22211 1112
Q ss_pred HHHHHHHHHHHhcC-----CCCCCH----HHHHHHHcC--CCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 256 KDLQKELLSKLLND-----GNARNV----ESQLNRLAR--KKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 256 ~~l~~~l~~~l~~~-----~~~~~~----~~l~~~L~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
...+..+...+... ....+. ..+.+.+.+ +++||||||+|+...++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 22222333444321 111133 445555554 7999999999987765532 57899999999998
Q ss_pred cccccCcceEEEe---ccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCCCCHHHHHHHHH
Q 037173 325 VLENCWVNQIYRM---KELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCGRSKEVWESAMR 401 (617)
Q Consensus 325 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~~~~~~w~~~l~ 401 (617)
++..+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++... .+|...+.
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 344555 5899999999999988542 223346789999999999999999999997653 46888888
Q ss_pred HHccCC-----------CchHHHHHHHcHhcCChhHHHHHhhhhcccCC--cCHHHHHHhHhhcCCchHHhHHHHhhCCC
Q 037173 402 KLEIIP-----------HVDILKVLKISYDSLDDSQKNVFLDIACLLEG--EHRDEVTSFFDASGFQAKIELSVLEDKSL 468 (617)
Q Consensus 402 ~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~--~~~~~L~~~w~~~g~~~~~~l~~L~~~sL 468 (617)
.+.... ...+..++..||+.||++.|.||++||+||++ ++.+.+..+|..++......+++|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 876432 24689999999999999999999999999986 78889999998876677889999999999
Q ss_pred ceEe--C--CEEEecHHHHHHHHHH
Q 037173 469 ITCL--N--NQIRMHDLLRDMGREI 489 (617)
Q Consensus 469 i~~~--~--~~~~mHdlv~~~a~~~ 489 (617)
++.. + .+|+||+++|+++++.
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHH
T ss_pred eEEecCCCccEEEEcHHHHHHHHhh
Confidence 9976 2 3699999999999987
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.7e-30 Score=235.54 Aligned_cols=121 Identities=23% Similarity=0.385 Sum_probs=111.6
Q ss_pred CCCCCcccEEEcCccccCCCchHHHHHHHHhhCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhHH
Q 037173 10 RNAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCLD 88 (617)
Q Consensus 10 ~~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~ 88 (617)
..+.++|||||||+++| +..|+.+|+++|+++|++||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 46679999999999999 45799999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCEEEEEEeecCCCccccccccchhhHHHhh
Q 037173 89 ELLKILECKHDYGQIVIPVFYRVDPSHVRWKTGTFGDYFSELG 131 (617)
Q Consensus 89 El~~~~~~~~~~~~~vipi~~~v~p~~v~~~~~~~~~~~~~~~ 131 (617)
||..|+++....+.+|+||||+++|++|++|.|.|+++|....
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999999877777899999999999999999999999877553
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=2e-25 Score=198.88 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=80.2
Q ss_pred CCCCCcccEEEcCccccCCCchHHHHHHHHhh--CCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhh
Q 037173 10 RNAKKLHDVFLSFRGEDTRDNFTSHLHYVLSL--KGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWC 86 (617)
Q Consensus 10 ~~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c 86 (617)
....+.|||||||+++| ..||.+|+.+|++ .|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 45678999999999999 5699999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCEEEEEEeecCCCcc
Q 037173 87 LDELLKILECKHDYGQIVIPVFYRVDPSHV 116 (617)
Q Consensus 87 ~~El~~~~~~~~~~~~~vipi~~~v~p~~v 116 (617)
..|+..|+.+......+|||||+++++.++
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 999999999874344478899999876554
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.85 E-value=2.6e-22 Score=181.92 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=91.1
Q ss_pred CCCCcccEEEcCccccCCCchHHHHHHHHhhC--CCceeecC-CcCCCCcchHHHHHHHH-hcceEEEEecCCccCChhh
Q 037173 11 NAKKLHDVFLSFRGEDTRDNFTSHLHYVLSLK--GIKTFVDD-QLIRGDNISRSLLDTIE-ASSISIIIFSERYASSRWC 86 (617)
Q Consensus 11 ~~~~~~dvFisy~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~s~~y~~s~~c 86 (617)
...+.|||||||+++| .+||.+|+.+|+++ |+++|+|+ |+.+|+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4467899999999999 78999999999985 69999999 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHHh-hhCCCEEEEEEeecCC
Q 037173 87 LDELLKILECK-HDYGQIVIPVFYRVDP 113 (617)
Q Consensus 87 ~~El~~~~~~~-~~~~~~vipi~~~v~p 113 (617)
..|+..|+.+. ...+.+||||+|+..+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999875 3334579999998653
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.84 E-value=3.1e-22 Score=184.18 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=88.1
Q ss_pred CCCCCcccEEEcCccccCCCchHHH-HHHHHhh--CCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChh
Q 037173 10 RNAKKLHDVFLSFRGEDTRDNFTSH-LHYVLSL--KGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRW 85 (617)
Q Consensus 10 ~~~~~~~dvFisy~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~ 85 (617)
....+.|||||||+++| .+||.+ |++.|++ +|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45678999999999999 579985 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh-hhCCCEEEEEEeecCC
Q 037173 86 CLDELLKILECK-HDYGQIVIPVFYRVDP 113 (617)
Q Consensus 86 c~~El~~~~~~~-~~~~~~vipi~~~v~p 113 (617)
|..|+..|+.+. .+.+++||||||+..|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998654 4456789999998433
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.84 E-value=1.6e-22 Score=181.40 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCCcccEEEcCccccCCCchHHH-HHHHHhhC--CCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhH
Q 037173 12 AKKLHDVFLSFRGEDTRDNFTSH-LHYVLSLK--GIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCL 87 (617)
Q Consensus 12 ~~~~~dvFisy~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~ 87 (617)
.++.|||||||+++| ..||.+ |++.|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 457899999999999 579997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhCCCEEEEEEeec
Q 037173 88 DELLKILECK-HDYGQIVIPVFYRV 111 (617)
Q Consensus 88 ~El~~~~~~~-~~~~~~vipi~~~v 111 (617)
.|+..|+.+. .+.+.+||||||+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999988543 45567899999973
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.83 E-value=4e-21 Score=173.84 Aligned_cols=100 Identities=23% Similarity=0.278 Sum_probs=88.2
Q ss_pred CcccEEEcCccccC---------CCchHHHHH-HHHh-hCCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCcc
Q 037173 14 KLHDVFLSFRGEDT---------RDNFTSHLH-YVLS-LKGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYA 81 (617)
Q Consensus 14 ~~~dvFisy~~~d~---------~~~~~~~l~-~~L~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~ 81 (617)
+.|||||||+++|. ++.||.++. +.|+ ..|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 46999999999995 245787755 4799 7999999999 9999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHHHh-hhCCCEEEEEEeecCC
Q 037173 82 -SSRWCLDELLKILECK-HDYGQIVIPVFYRVDP 113 (617)
Q Consensus 82 -~s~~c~~El~~~~~~~-~~~~~~vipi~~~v~p 113 (617)
.|.||..|+..|+.+. .+.+.+||||+++..+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999887 5567899999988544
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.79 E-value=6.2e-18 Score=175.05 Aligned_cols=288 Identities=13% Similarity=0.102 Sum_probs=178.4
Q ss_pred cccccccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh---ccCC
Q 037173 178 DATFQSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE---ETGR 254 (617)
Q Consensus 178 ~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~---~~~~ 254 (617)
.+.++..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++. . .+|+. ..... ....
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~ 73 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHIT 73 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBC
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCC
Confidence 3455667788999999999999998642 689999999999999999999874 2 55655 22111 0113
Q ss_pred HHHHHHHHHHHHhc----------------CCC---CCCHHHHHHHH----c-CCCeEEEEeCCCCHH--------h-HH
Q 037173 255 IKDLQKELLSKLLN----------------DGN---ARNVESQLNRL----A-RKKVLLVFDDVNHPG--------Q-IE 301 (617)
Q Consensus 255 ~~~l~~~l~~~l~~----------------~~~---~~~~~~l~~~L----~-~k~~LlVLDdv~~~~--------~-~~ 301 (617)
...+...+...+.. ... ......+.+.+ . .++++|||||++... . +.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 44444444443321 000 12344343333 2 249999999996432 2 23
Q ss_pred HHHcccCCCCCCcEEEEEcCCcccccc-----------c-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHH
Q 037173 302 SLIGCLDELASGSRVIITTRDKQVLEN-----------C-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRK 369 (617)
Q Consensus 302 ~l~~~l~~~~~gs~IlvTTR~~~v~~~-----------~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 369 (617)
.+...... .++.++|+|++....... . .....+++.+|+.+|+.+++.......... ...+.+..
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~ 230 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEE 230 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHH
Confidence 23222211 257889999886532110 1 123579999999999999998754211111 12456889
Q ss_pred HHHHccCCchHHHHHhhhhCC-CCHHHHHHHHHHHccCCCchHHHHHHHcHhcC---ChhHHHHHhhhhcccCCcCHHHH
Q 037173 370 AIKYAHGVPLALQVLGRHLCG-RSKEVWESAMRKLEIIPHVDILKVLKISYDSL---DDSQKNVFLDIACLLEGEHRDEV 445 (617)
Q Consensus 370 i~~~~~G~PLai~~~a~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~fp~~~~~~~L 445 (617)
+++.|+|+|+++..++..+.. .+...+. ..+. +.+...+...+..+ ++..+.++..+|+ . ..+...+
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l 301 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLI 301 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHH
Confidence 999999999999998876422 2222221 1110 11122222223333 7888999999998 2 3566677
Q ss_pred HHhHhhc--CC---chHHhHHHHhhCCCceEeCCEEEe-cHHHHHHHH
Q 037173 446 TSFFDAS--GF---QAKIELSVLEDKSLITCLNNQIRM-HDLLRDMGR 487 (617)
Q Consensus 446 ~~~w~~~--g~---~~~~~l~~L~~~sLi~~~~~~~~m-Hdlv~~~a~ 487 (617)
....... +. ....+++.|.+.+||...++.|++ |++++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 6655221 22 235689999999999987777765 788888754
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.76 E-value=1.5e-17 Score=172.61 Aligned_cols=287 Identities=14% Similarity=0.135 Sum_probs=175.6
Q ss_pred cccccccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh--ccCCH
Q 037173 178 DATFQSENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE--ETGRI 255 (617)
Q Consensus 178 ~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~ 255 (617)
.+.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++... ..+|+.. .... .....
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 74 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDL-RKFEERNYISY 74 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEG-GGGTTCSCCCH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEc-hhhccccCCCH
Confidence 34455667889999999999999 752 59999999999999999999988643 2466652 2110 01122
Q ss_pred HHHHHHHHHHHh-------------cC-------C----------CCCCHHHHHHHHcC---CCeEEEEeCCCCH-----
Q 037173 256 KDLQKELLSKLL-------------ND-------G----------NARNVESQLNRLAR---KKVLLVFDDVNHP----- 297 (617)
Q Consensus 256 ~~l~~~l~~~l~-------------~~-------~----------~~~~~~~l~~~L~~---k~~LlVLDdv~~~----- 297 (617)
..+...+...+. .. . ....+..+.+.+.. ++++|||||++..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 333333332221 00 0 11245556555542 4899999999542
Q ss_pred HhHHHHHcccCCCCCCcEEEEEcCCcccccc----------c-C-cceEEEeccCChhHHHHHHHHhhhc-CCCCChhHH
Q 037173 298 GQIESLIGCLDELASGSRVIITTRDKQVLEN----------C-W-VNQIYRMKELVDVDAHKLFCQCAFR-GGHLDASYT 364 (617)
Q Consensus 298 ~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~ 364 (617)
..+..++..+....++.++|+|++....... . + ....+.+.+|+.+|+.+++...... +.... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~-- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D-- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C--
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c--
Confidence 1222222222111247789999987542110 1 1 1367999999999999999875421 11222 1
Q ss_pred HHHHHHHHHccCCchHHHHHhhhhCC-CCHHHHHHH-HHHHccCCCchHHHHHHHcH---hcCChhHHHHHhhhhcccCC
Q 037173 365 EVTRKAIKYAHGVPLALQVLGRHLCG-RSKEVWESA-MRKLEIIPHVDILKVLKISY---DSLDDSQKNVFLDIACLLEG 439 (617)
Q Consensus 365 ~~~~~i~~~~~G~PLai~~~a~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~~sy---~~L~~~~k~~fl~la~fp~~ 439 (617)
...|++.|+|+|+++..++..+.. .+...|... .+.. ...+...+...+ ..|++..+.++..+|+ . .
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~ 303 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G 303 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C
Confidence 178999999999999999877632 233333211 1110 001111222111 1688899999999998 3 3
Q ss_pred cCHHHHHHhHh-hcC--C---chHHhHHHHhhCCCceEeCCEEE-ecHHHHHHH
Q 037173 440 EHRDEVTSFFD-ASG--F---QAKIELSVLEDKSLITCLNNQIR-MHDLLRDMG 486 (617)
Q Consensus 440 ~~~~~L~~~w~-~~g--~---~~~~~l~~L~~~sLi~~~~~~~~-mHdlv~~~a 486 (617)
+...+..... ..| . ....+++.|++.+||...++.|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 6666664332 123 2 34578999999999998767777 578998864
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.70 E-value=6.1e-16 Score=163.89 Aligned_cols=279 Identities=13% Similarity=0.070 Sum_probs=171.7
Q ss_pred cCCCcccchhhHHHHHHHh-hh--cC--CCeEEEEE--eccCCChhhHHHHHHHHHhhhc-----cCc-eEEEEechhhh
Q 037173 184 ENKGLVGVAWRIKEIESLL-CI--RS--AGVYVLGI--WGIGGIGKTTIAGAVFNKISRC-----FEG-SYFALDVREAE 250 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~-~~~~~~~~~~~ 250 (617)
.+..|+||+.++++|.+++ .. .. ...+.+.| +|++|+||||||+.+++..... +.. .+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4578999999999999988 52 12 23456777 9999999999999999986553 222 34554 33
Q ss_pred ccCCHHHHHHHHHHHHhcCCCC--CCH----HHHHHHHc--CCCeEEEEeCCCCH--------HhHHHHHcccCCC---C
Q 037173 251 ETGRIKDLQKELLSKLLNDGNA--RNV----ESQLNRLA--RKKVLLVFDDVNHP--------GQIESLIGCLDEL---A 311 (617)
Q Consensus 251 ~~~~~~~l~~~l~~~l~~~~~~--~~~----~~l~~~L~--~k~~LlVLDdv~~~--------~~~~~l~~~l~~~---~ 311 (617)
.......++..++..++...+. .+. ..+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 4456778888888887654221 122 44445553 67999999999642 3344444333221 2
Q ss_pred --CCcEEEEEcCCccccccc---------CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHcc-----
Q 037173 312 --SGSRVIITTRDKQVLENC---------WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAH----- 375 (617)
Q Consensus 312 --~gs~IlvTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~----- 375 (617)
.+..+|+||+...+.... .....+.+++|+.+++.++|...+...........+.+..|++.|+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 345578888755422110 1123399999999999999976542111111123567888999999
Q ss_pred -CCchHHHHHhhhh------CCC---CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhccc----CCcC
Q 037173 376 -GVPLALQVLGRHL------CGR---SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLL----EGEH 441 (617)
Q Consensus 376 -G~PLai~~~a~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp----~~~~ 441 (617)
|+|..+..+.... .+. +.+.+..+...... ...+..++..||+..+.++..++.+. ..++
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 9997665554321 111 23333333332110 23445567889999999999898764 1255
Q ss_pred HHHHHHhH-----hhcCC------chHHhHHHHhhCCCceEe
Q 037173 442 RDEVTSFF-----DASGF------QAKIELSVLEDKSLITCL 472 (617)
Q Consensus 442 ~~~L~~~w-----~~~g~------~~~~~l~~L~~~sLi~~~ 472 (617)
...+...+ ...|. ....+++.|++.+||...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 55443322 22222 134679999999999875
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=3.3e-13 Score=141.41 Aligned_cols=273 Identities=15% Similarity=0.068 Sum_probs=172.2
Q ss_pred CCCcccchhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhc--------cCceEEEEechhhhccC-
Q 037173 185 NKGLVGVAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC--------FEGSYFALDVREAEETG- 253 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~- 253 (617)
++.|+||+.+++++..++.. .....+.+.|+|++|+|||+||+.+++..... ....+|+. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 47899999999999988863 23445689999999999999999999986443 22344544 33334
Q ss_pred CHHHHHHHHHHHHhcCCCC---C----CHHHHHHHHcCCCeEEEEeCCCCHH------h-HHHHHcccCCCCCCcEEEEE
Q 037173 254 RIKDLQKELLSKLLNDGNA---R----NVESQLNRLARKKVLLVFDDVNHPG------Q-IESLIGCLDELASGSRVIIT 319 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~---~----~~~~l~~~L~~k~~LlVLDdv~~~~------~-~~~l~~~l~~~~~gs~IlvT 319 (617)
....+...++..+.+.... . .+..+.+.+..++.+|||||++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 6677777877777433111 1 1355666677666699999996432 2 33333322 67889999
Q ss_pred cCCccccccc------CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHcc---CCch-HHHHHhhhh-
Q 037173 320 TRDKQVLENC------WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAH---GVPL-ALQVLGRHL- 388 (617)
Q Consensus 320 TR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PL-ai~~~a~~L- 388 (617)
|+........ .....+.+++++.++..+++...+...-.......+..+.+++.++ |.|. ++..+-...
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8875321111 1123899999999999999998753211111122355677888888 9887 333332222
Q ss_pred -C----CCCHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcccC-CcCHHHHHHhHhhcCC------ch
Q 037173 389 -C----GRSKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLLE-GEHRDEVTSFFDASGF------QA 456 (617)
Q Consensus 389 -~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~-~~~~~~L~~~w~~~g~------~~ 456 (617)
. .-+.+.+..++.... ...+..++..|++..+..+..++.... +-..+....+....|. ..
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 125666666666542 245667788999998888887776111 1001122233222221 23
Q ss_pred HHhHHHHhhCCCceEe
Q 037173 457 KIELSVLEDKSLITCL 472 (617)
Q Consensus 457 ~~~l~~L~~~sLi~~~ 472 (617)
..++..|.+.|++...
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5678999999999875
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=3.6e-13 Score=140.92 Aligned_cols=279 Identities=15% Similarity=0.093 Sum_probs=169.9
Q ss_pred ccCCCcccchhhHHHHHHHhhhc--CCCeEEEEEeccCCChhhHHHHHHHHHhhhccC---ceEEEEechhhhccCCHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIR--SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE---GSYFALDVREAEETGRIKD 257 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 257 (617)
..+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. .........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 34578999999999999988632 344668999999999999999999998766542 345554 333345556
Q ss_pred HHHHHHHHHhcCCCC--CCH----HHHHHHHc--CCCeEEEEeCCCC------HHhHHHHHcccCC-CCCCcEEEEEcCC
Q 037173 258 LQKELLSKLLNDGNA--RNV----ESQLNRLA--RKKVLLVFDDVNH------PGQIESLIGCLDE-LASGSRVIITTRD 322 (617)
Q Consensus 258 l~~~l~~~l~~~~~~--~~~----~~l~~~L~--~k~~LlVLDdv~~------~~~~~~l~~~l~~-~~~gs~IlvTTR~ 322 (617)
+...++..+...... ... ..+.+.+. +++.+||||+++. .+.+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 666666555432111 122 34444443 4489999999953 2334444433321 1345677888876
Q ss_pred cccccccC-------cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHcc---CCchHHHHHhhhh----
Q 037173 323 KQVLENCW-------VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAH---GVPLALQVLGRHL---- 388 (617)
Q Consensus 323 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLai~~~a~~L---- 388 (617)
........ ....+.+++++.++..+++...+...........+..+.+++.++ |.|..+..+....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 54322221 125899999999999999988653111111223456777888887 9998444332221
Q ss_pred --CC---CCHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcccC-C---cCHHHH----HHhHhhcCC-
Q 037173 389 --CG---RSKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLLE-G---EHRDEV----TSFFDASGF- 454 (617)
Q Consensus 389 --~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~-~---~~~~~L----~~~w~~~g~- 454 (617)
.+ -+.+.+..++.... ...+..++..||+..+..+..++.+.+ + +....+ ..+....|.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 11 13455555544431 245667788999988888887775322 2 334322 222222221
Q ss_pred -----chHHhHHHHhhCCCceEe
Q 037173 455 -----QAKIELSVLEDKSLITCL 472 (617)
Q Consensus 455 -----~~~~~l~~L~~~sLi~~~ 472 (617)
....+++.|.+.|+|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 235679999999999864
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=173.20 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=91.9
Q ss_pred CCCCcccEEEcCccccCCCchH-HHHHHHHhh-----CCCceeecC-CcCCCCcchHHHHHHHHhcceEEEEecCCccCC
Q 037173 11 NAKKLHDVFLSFRGEDTRDNFT-SHLHYVLSL-----KGIKTFVDD-QLIRGDNISRSLLDTIEASSISIIIFSERYASS 83 (617)
Q Consensus 11 ~~~~~~dvFisy~~~d~~~~~~-~~l~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s 83 (617)
...++|||||||+++| ..|| .+|.+.||. .|+++|+|+ |+.||+.+.++|.+||++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4568999999999999 6799 689999985 589999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHh-hhCCCEEEEEEeecCCC
Q 037173 84 RWCLDELLKILECK-HDYGQIVIPVFYRVDPS 114 (617)
Q Consensus 84 ~~c~~El~~~~~~~-~~~~~~vipi~~~v~p~ 114 (617)
.||..|+..|+.+. ++.+++||||||+..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999988776 45567899999985543
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.50 E-value=3e-12 Score=134.05 Aligned_cols=278 Identities=15% Similarity=0.084 Sum_probs=169.7
Q ss_pred cCCCcccchhhHHHHHHHhhhc--CCCeEEEEEeccCCChhhHHHHHHHHHhhhcc-----C-ceEEEEechhhhccCCH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIR--SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF-----E-GSYFALDVREAEETGRI 255 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~~ 255 (617)
.++.|+||+.+++++..++... ....+.+.|+|++|+|||+||+.+++.....+ . ..+++. .......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 3478999999999999988532 34466899999999999999999999864432 2 234444 3344566
Q ss_pred HHHHHHHHHHHhcCCCCC--CH----HHHHHHH--cCCCeEEEEeCCCCHH-------hHHHHHcccCCC--CCCcEEEE
Q 037173 256 KDLQKELLSKLLNDGNAR--NV----ESQLNRL--ARKKVLLVFDDVNHPG-------QIESLIGCLDEL--ASGSRVII 318 (617)
Q Consensus 256 ~~l~~~l~~~l~~~~~~~--~~----~~l~~~L--~~k~~LlVLDdv~~~~-------~~~~l~~~l~~~--~~gs~Ilv 318 (617)
..+...++..+....... .. ..+.+.+ .+++.+||||+++... .+..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 777778888775542221 22 4444455 3457899999997532 222233322211 34567788
Q ss_pred EcCCccccccc------C-cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHcc---CCchHH-HHHhhh
Q 037173 319 TTRDKQVLENC------W-VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAH---GVPLAL-QVLGRH 387 (617)
Q Consensus 319 TTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLai-~~~a~~ 387 (617)
||+........ . ....+.+++++.++..+++...+...........+..+.+++.++ |.|-.+ ..+...
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88765322111 1 125789999999999999988753210111122345677888888 999433 322222
Q ss_pred h---C--C---CCHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcccCC---cCHHHHHHh----Hhhc
Q 037173 388 L---C--G---RSKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLLEG---EHRDEVTSF----FDAS 452 (617)
Q Consensus 388 L---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~---~~~~~L~~~----w~~~ 452 (617)
. . + -+.+.+..++.... ...+..++..|+++.+..+..++....+ +....+.+. ....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 1 1 1 14555666555531 2346667899999998888777743323 434433222 2222
Q ss_pred CC------chHHhHHHHhhCCCceEe
Q 037173 453 GF------QAKIELSVLEDKSLITCL 472 (617)
Q Consensus 453 g~------~~~~~l~~L~~~sLi~~~ 472 (617)
|. ....+++.|...|++...
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22 234679999999999974
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=2.9e-12 Score=134.34 Aligned_cols=299 Identities=14% Similarity=0.074 Sum_probs=183.1
Q ss_pred cCCCcccchhhHHHHHHHhhhc----CCCeEEEEEeccCCChhhHHHHHHHHHhhhcc-CceEEEEechhhhccCCHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIR----SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF-EGSYFALDVREAEETGRIKDL 258 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l 258 (617)
.++.++||+.+++++..++... ....+.+.|+|++|+||||||+.+++...... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 3478999999999999988641 12234899999999999999999998865542 2344554 3344556677
Q ss_pred HHHHHHHHhcCCCC--CCH----HHHHHHHc--CCCeEEEEeCCCC--HHhHHHHHcccCCCC----CCcEEEEEcCCcc
Q 037173 259 QKELLSKLLNDGNA--RNV----ESQLNRLA--RKKVLLVFDDVNH--PGQIESLIGCLDELA----SGSRVIITTRDKQ 324 (617)
Q Consensus 259 ~~~l~~~l~~~~~~--~~~----~~l~~~L~--~k~~LlVLDdv~~--~~~~~~l~~~l~~~~----~gs~IlvTTR~~~ 324 (617)
...++..+...... ... ..+.+.+. +++.+||||+++. ...+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 77777776543221 122 33333332 5688999999964 455555555543221 4677888887663
Q ss_pred cccccC-------cceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHc---------cCCchHHHHHhhhh
Q 037173 325 VLENCW-------VNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYA---------HGVPLALQVLGRHL 388 (617)
Q Consensus 325 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLai~~~a~~L 388 (617)
...... ....+.+++++.++..+++...+........-..+..+.+++.+ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322211 12369999999999999998876321111123356788899999 79886544433321
Q ss_pred C------C---CCHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhccc---C--CcCHHHHHHhHhh---
Q 037173 389 C------G---RSKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLL---E--GEHRDEVTSFFDA--- 451 (617)
Q Consensus 389 ~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp---~--~~~~~~L~~~w~~--- 451 (617)
. + -+.+....+....... .+...+..|+++.+.++..++.+. . .++...+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 1233333333333211 123346778888888888787654 2 3555555443332
Q ss_pred -cCC------chHHhHHHHhhCCCceEe-C-------CEEE-------ecHHHHHHHHHHHhhc
Q 037173 452 -SGF------QAKIELSVLEDKSLITCL-N-------NQIR-------MHDLLRDMGREIVRNE 493 (617)
Q Consensus 452 -~g~------~~~~~l~~L~~~sLi~~~-~-------~~~~-------mHdlv~~~a~~~~~~e 493 (617)
.|. ....++..|.+.++|... . ++++ .|+++..+...+..+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 221 234679999999999985 2 2222 4567776666666554
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=9.7e-12 Score=120.90 Aligned_cols=186 Identities=15% Similarity=0.088 Sum_probs=120.1
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCc---------------------eEE
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG---------------------SYF 242 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---------------------~~~ 242 (617)
....++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.....+.. ...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 34579999999999999997432 23578999999999999999999876543211 011
Q ss_pred EEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEc
Q 037173 243 ALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
+. ...... ......++..+... ...+++.+||+||++ +...++.+...+.....+..+|+||
T Consensus 100 ~~----~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 100 ID----AASRTK-VEDTRDLLDNVQYA-----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp EE----TTCGGG-HHHHHHHHHSCCCS-----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred ec----Cccccc-HHHHHHHHHHhhhc-----------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 11 000000 11111111111000 013467899999995 4566677766665556678888888
Q ss_pred CCcccccc--cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh
Q 037173 321 RDKQVLEN--CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL 388 (617)
Q Consensus 321 R~~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L 388 (617)
+....... ......+++++++.++..+++...+..... ....+..+.|++.|+|+|..+..+...+
T Consensus 164 ~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 164 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 76532211 122368999999999999999887744321 1234667899999999999888776543
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=5.8e-11 Score=113.72 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=117.1
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
.....++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++..... +...+.... .+.......+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 88 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN---ASDERGIDVVRHK 88 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE---TTCTTCHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec---cccccChHHHHHH
Confidence 345679999999999999997432 2348999999999999999999885433 222222221 1122222222221
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCccccc-c-cCcceEEEe
Q 037173 262 LLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQVLE-N-CWVNQIYRM 337 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~-~-~~~~~~~~l 337 (617)
+ ........ ...+++.+||+||++. ....+.+...+.....++.+|+||+...... . ......+.+
T Consensus 89 ~-~~~~~~~~---------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 89 I-KEFARTAP---------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp H-HHHHTSCC---------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred H-HHHhcccC---------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1 11111100 0025688999999964 3445555555544456788888887653211 1 112348899
Q ss_pred ccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 338 KELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 338 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
.+++.++..+++...+...... ...+..+.+++.++|+|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999998876432211 2245678899999999986554433
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=6.6e-10 Score=113.09 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=114.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCc-eEEEEechhhhccCCHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEG-SYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+... +.. .+.+. .+.......+ .+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i-~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV-RN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-HT
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-HH
Confidence 34679999999999999986433 2338999999999999999999985332 221 22222 1121222222 22
Q ss_pred HHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCccc-ccc-cCcceEEE
Q 037173 262 LLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQV-LEN-CWVNQIYR 336 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~v-~~~-~~~~~~~~ 336 (617)
++..+..... .+ .+++.++|+||++. ....+.+...+.....++.+|+||+...- ... ......++
T Consensus 92 ~~~~~~~~~~---------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 92 QIKHFAQKKL---------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHHHHHBCC---------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHHhccc---------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 2222210000 01 34588999999974 34455555554444567888888866432 111 12235899
Q ss_pred eccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchH-HHHHh
Q 037173 337 MKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLA-LQVLG 385 (617)
Q Consensus 337 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-i~~~a 385 (617)
+.+++.++..+++...+..... ....+.++.+++.++|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999887632211 12246678899999999954 44443
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=1.4e-09 Score=110.96 Aligned_cols=186 Identities=17% Similarity=0.128 Sum_probs=115.2
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCc-eEEEEechhhhccCCHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEG-SYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~~ 260 (617)
.....++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++.+... +.. .+.+. . +.......+ .
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~~~-~ 94 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-A---SDERGINVI-R 94 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-T---TCHHHHHTT-H
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-c---cccCchHHH-H
Confidence 34567999999999999998754 33348999999999999999999985332 111 22222 1 111011111 1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcccc-ccc-CcceEEE
Q 037173 261 ELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQVL-ENC-WVNQIYR 336 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~~~-~~~~~~~ 336 (617)
..+........ ...+++.++|+||++. .+..+.+...+.....++++|+||...... ... .....+.
T Consensus 95 ~~~~~~~~~~~---------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 95 EKVKEFARTKP---------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHHHHHHHSCC---------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred HHHHHHHhhCC---------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 11111100000 0125678999999974 455566665555445678888888765321 111 1234789
Q ss_pred eccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 337 MKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 337 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
+.+++.++..+++...+.... .....+..+.|++.++|.|..+..+..
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEG--LELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT--CEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999987763322 123356778899999999986655443
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.07 E-value=1.9e-08 Score=102.35 Aligned_cols=261 Identities=13% Similarity=0.060 Sum_probs=152.7
Q ss_pred cCCCcccchhhHHHHHHHhhh---cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCI---RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
....++|++..++.+..++.. .......+.|+|++|+|||+||+.+++..... ..++. .+......+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~----~~~~~~~~~--- 79 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS----GPAIEKPGD--- 79 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC----TTTCCSHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe----ccccCChHH---
Confidence 456799999999999888752 12234578899999999999999999876422 22332 111111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHc---CCCeEEEEeCCCCH--HhHHHHHcccCCC------------------CCCcEEE
Q 037173 261 ELLSKLLNDGNARNVESQLNRLA---RKKVLLVFDDVNHP--GQIESLIGCLDEL------------------ASGSRVI 317 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L~---~k~~LlVLDdv~~~--~~~~~l~~~l~~~------------------~~gs~Il 317 (617)
+...+. .++.+|+||+++.. .....+...+... .++..+|
T Consensus 80 -----------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 -----------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -----------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -----------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 112222 35679999999743 3334343322211 1245666
Q ss_pred EEcCCcc-ccccc--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhhCC----
Q 037173 318 ITTRDKQ-VLENC--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHLCG---- 390 (617)
Q Consensus 318 vTTR~~~-v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L~~---- 390 (617)
.||.... +.... .....+.+.+++.++..+++...+..... .-..+..+.+++.++|+|-.+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6665442 21111 12357899999999999999887643221 223567889999999999887766554421
Q ss_pred --C---CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcc-cC-CcCHHHHHHhHhhcCCchHHhHHH-
Q 037173 391 --R---SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACL-LE-GEHRDEVTSFFDASGFQAKIELSV- 462 (617)
Q Consensus 391 --~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f-p~-~~~~~~L~~~w~~~g~~~~~~l~~- 462 (617)
. +.+....++..+ ...+..|++..+..+..+... .. .+....+.+.+.-........+..
T Consensus 221 ~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~ 288 (324)
T 1hqc_A 221 AGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPY 288 (324)
T ss_dssp TSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHH
T ss_pred hcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHH
Confidence 1 223333333222 223456777777777655533 22 266666666554322222333333
Q ss_pred HhhCCCceEeCCEEEecHHHHHH
Q 037173 463 LEDKSLITCLNNQIRMHDLLRDM 485 (617)
Q Consensus 463 L~~~sLi~~~~~~~~mHdlv~~~ 485 (617)
+++.++++.......+-+...++
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHH
T ss_pred HHHhcchhcCCccceecHHHHHH
Confidence 78889998775555555554444
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.90 E-value=1.1e-08 Score=103.85 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=113.9
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh-ccCc-eEEEEechhhhccCCHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR-CFEG-SYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~l~~ 260 (617)
.....++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+.. .+.+. .........+.....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHKIK 90 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHHHH
Confidence 34466999999999999998643 3334899999999999999999988522 2211 12222 111000011111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcc-cccc-cCcceEE
Q 037173 261 ELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQ-VLEN-CWVNQIY 335 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~ 335 (617)
.+... . .+ .+++.++|+|+++. .+..+.+...+.....++.+|+||.... +... ......+
T Consensus 91 ~~~~~---~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 91 EFART---A-----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp HHHHS---C-----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred HHHhc---C-----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 11100 0 01 25678999999963 4555667666665566788888876543 1111 1123589
Q ss_pred EeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 336 RMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 336 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
++.+++.++..+++...+..... .-..+..+.+++.++|.+..+....
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999877633221 1235667889999999998655443
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.88 E-value=1.3e-08 Score=105.77 Aligned_cols=191 Identities=14% Similarity=0.093 Sum_probs=115.9
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELL 263 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (617)
....++|++..++.+...+..+. ....+.|+|++|+||||+|+.+++......... . . ....... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~-~------~~~~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-A-T------PCGVCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-S-S------CCSSSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-C-C------CCcccHH-HHHHh
Confidence 34569999999999999986432 234788999999999999999998753221100 0 0 0000000 00000
Q ss_pred HHH-------hcC--CCCCCHHHHHHHHc-----CCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCccc-c
Q 037173 264 SKL-------LND--GNARNVESQLNRLA-----RKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQV-L 326 (617)
Q Consensus 264 ~~l-------~~~--~~~~~~~~l~~~L~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v-~ 326 (617)
... ... .....+..+.+.+. +++.++|+||++ +....+.+...+.....+..+|++|....- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 00113444444442 457899999996 345566666666554566777777764431 1
Q ss_pred cc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 327 EN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
.. ......+++.+++.++..+++...+..... ....+.+..|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 122368899999999999999876532211 12245678899999999997766543
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.83 E-value=2.2e-07 Score=95.07 Aligned_cols=252 Identities=13% Similarity=0.128 Sum_probs=145.8
Q ss_pred cCCCcccchhhHHHHHHHhhhc---CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIR---SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
....++|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| +.+. . ........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~---~~~~~~~~--- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-A---PMIEKSGD--- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-G---GGCCSHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-c---hhccchhH---
Confidence 4567999999999999988642 33455789999999999999999988754332 2222 1 11111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH--cCCCeEEEEeCCCC--HHhHHHHHcccCCC------------------CCCcEEEE
Q 037173 261 ELLSKLLNDGNARNVESQLNRL--ARKKVLLVFDDVNH--PGQIESLIGCLDEL------------------ASGSRVII 318 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~--~~~~~~l~~~l~~~------------------~~gs~Ilv 318 (617)
+...+ ..+..+|+||+++. ......+...+... .++..+|.
T Consensus 97 -----------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 97 -----------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -----------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -----------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11111 24567999999963 33344444333211 11245666
Q ss_pred EcCCccccc-c--cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh------C
Q 037173 319 TTRDKQVLE-N--CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL------C 389 (617)
Q Consensus 319 TTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L------~ 389 (617)
||....... . -.....+.+.+++.++..+++...+.... .....+..+.+++.+.|+|-.+..+...+ .
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 665432211 1 12346899999999999999987763322 22335677888999999996555443322 1
Q ss_pred CC---CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhhcccCC-cCHHHHHHhHhhcCCchHHhHH-HHh
Q 037173 390 GR---SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIACLLEG-EHRDEVTSFFDASGFQAKIELS-VLE 464 (617)
Q Consensus 390 ~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~-~~~~~L~~~w~~~g~~~~~~l~-~L~ 464 (617)
+. +.+.....+.. +..+...++...+..+..++-...+ +....+.+.+....-.....++ .|+
T Consensus 238 ~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~ 305 (338)
T 3pfi_A 238 DEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLL 305 (338)
T ss_dssp TCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHH
T ss_pred cCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHH
Confidence 11 22222222222 2223344555556666555554222 6677776665443323344555 888
Q ss_pred hCCCceEe-CCEE
Q 037173 465 DKSLITCL-NNQI 476 (617)
Q Consensus 465 ~~sLi~~~-~~~~ 476 (617)
+.++|... .++.
T Consensus 306 ~~gli~~~~~g~~ 318 (338)
T 3pfi_A 306 ANGYIERTAKGRI 318 (338)
T ss_dssp HTTSEEEETTEEE
T ss_pred HcCceecCCCccc
Confidence 99999877 4443
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.7e-07 Score=92.58 Aligned_cols=163 Identities=9% Similarity=0.022 Sum_probs=100.0
Q ss_pred CcccchhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC-------ceEEEEechhhhccCCHHH
Q 037173 187 GLVGVAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE-------GSYFALDVREAEETGRIKD 257 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~ 257 (617)
.+.||++|+++|...|.. .....+.+.|+|++|+|||++++.+++.+..... ..+.+. .....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHH
Confidence 388999999999988863 2345678899999999999999999998754321 133444 223345567
Q ss_pred HHHHHHHHHhcCCCC--CCHHHHHHHH------cCCCeEEEEeCCCCH---HhHHHHHcccCCCCCCcEEEEEcCCcccc
Q 037173 258 LQKELLSKLLNDGNA--RNVESQLNRL------ARKKVLLVFDDVNHP---GQIESLIGCLDELASGSRVIITTRDKQVL 326 (617)
Q Consensus 258 l~~~l~~~l~~~~~~--~~~~~l~~~L------~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IlvTTR~~~v~ 326 (617)
+...++.++.+.... .....+.+.+ .+++++++||+++.. +.+-.+............||.++...+..
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 777888888654221 1333333332 356789999999753 22333332111112222344444332221
Q ss_pred ---------cccCcceEEEeccCChhHHHHHHHHhhh
Q 037173 327 ---------ENCWVNQIYRMKELVDVDAHKLFCQCAF 354 (617)
Q Consensus 327 ---------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 354 (617)
..+ ....+.+++++.+|-.+++..++-
T Consensus 177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 111 125789999999999999988763
No 30
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.70 E-value=4e-08 Score=91.30 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=41.8
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....++||+.+++++.+.+.. ...+.+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999999864 33456789999999999999999998643
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=2.6e-07 Score=95.11 Aligned_cols=194 Identities=11% Similarity=0.123 Sum_probs=112.4
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh--ccCceEEEEechhhhccCCHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR--CFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+.. .+...+.-.+ .+.......+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~~~- 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN---ASDERGISIVR- 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC---SSSCCCHHHHT-
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc---cccccchHHHH-
Confidence 345679999999999999986432 223889999999999999999988542 2322222221 11112222222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCcc-ccccc-CcceEE
Q 037173 261 ELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDKQ-VLENC-WVNQIY 335 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~~-~~~~~~ 335 (617)
+..................... ..++-++++|+++. ......+...+.......++|++|.... +.... .....+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 2222211110000000000011 23456999999963 3444555555544445677777775442 21111 122478
Q ss_pred EeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 336 RMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 336 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.+.+++.++..+.+...+..... .-..+..+.|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999887632221 123567889999999999865443
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.67 E-value=5.5e-07 Score=89.73 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=104.5
Q ss_pred cccCCCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhh
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAE 250 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 250 (617)
......++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....| +.+. .....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHH
Confidence 344567999999999998877421 13345689999999999999999998754322 1222 11111
Q ss_pred ccC-C-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccC--CC
Q 037173 251 ETG-R-IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLD--EL 310 (617)
Q Consensus 251 ~~~-~-~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~--~~ 310 (617)
... . .......+ +.......+.+|+||+++.. ..+..+...+. ..
T Consensus 89 ~~~~~~~~~~~~~~---------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 KKFIGEGASLVKDI---------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp CCSTTHHHHHHHHH---------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred HhccchHHHHHHHH---------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 110 0 11111111 11122456789999999542 12223332222 12
Q ss_pred CCCcEEEEEcCCccccc-----ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHHH
Q 037173 311 ASGSRVIITTRDKQVLE-----NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQV 383 (617)
Q Consensus 311 ~~gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~ 383 (617)
..+..||.||....... .......+.++..+.++..+++........... ......++..+.|. |-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHHH
Confidence 34667788887654322 112345789999999999999988764322111 11246677777774 434443
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.67 E-value=4.8e-08 Score=94.55 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=102.1
Q ss_pred cCCCcccch---hhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHH
Q 037173 184 ENKGLVGVA---WRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 184 ~~~~~vGR~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (617)
..+.|+|.+ ..++.+..+.... ..+.+.|+|++|+|||+||+.+++..........++. ........ .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~--~---- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS--T---- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC--G----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH--H----
Confidence 345688743 4556666665432 4568899999999999999999998765544455555 11111100 0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCHH--h--HHHHHcccCCC-CCC-cEEEEEcCCccc-c----c--
Q 037173 261 ELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHPG--Q--IESLIGCLDEL-ASG-SRVIITTRDKQV-L----E-- 327 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~--~~~l~~~l~~~-~~g-s~IlvTTR~~~v-~----~-- 327 (617)
.. .+.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...- . .
T Consensus 97 ~~----------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 AL----------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp GG----------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred HH----------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 00 0011 346799999996321 1 23333222111 122 247777764321 1 1
Q ss_pred --ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhh
Q 037173 328 --NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGR 386 (617)
Q Consensus 328 --~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~ 386 (617)
.+.....+++.+++.++..+++...+..... ....+..+.+++.++|.+-.+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1112268999999999999999887642221 12356678899999999876655443
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.66 E-value=9.5e-07 Score=91.04 Aligned_cols=200 Identities=13% Similarity=0.148 Sum_probs=114.8
Q ss_pred hhHHHHHHHhhhhccccccccccCCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHH
Q 037173 162 ESKLIEAIANGVLKRLDATFQSENKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 162 e~~~i~~i~~~v~~~l~~~~~~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
++.+++.+...+....+ +..-..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++
T Consensus 63 ~~~~~~~i~~~i~~~~~---~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGP---PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCSC---CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCC---CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 55566666666644432 33456799999999999887742 123356789999999999999999998
Q ss_pred HhhhccCceEEEEechhhhccC-C-HHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCCeEEEEeCCCCH-----------
Q 037173 232 KISRCFEGSYFALDVREAEETG-R-IKDLQKELLSKLLNDGNARNVESQLNR-LARKKVLLVFDDVNHP----------- 297 (617)
Q Consensus 232 ~~~~~f~~~~~~~~~~~~~~~~-~-~~~l~~~l~~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~----------- 297 (617)
.... .++..+........ . ...... .+... -..++.+|+||+++..
T Consensus 140 ~~~~----~~~~i~~~~l~~~~~g~~~~~~~----------------~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 199 (357)
T 3d8b_A 140 QSGA----TFFSISASSLTSKWVGEGEKMVR----------------ALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199 (357)
T ss_dssp HTTC----EEEEEEGGGGCCSSTTHHHHHHH----------------HHHHHHHHTCSEEEEEETHHHHTBC------CH
T ss_pred HcCC----eEEEEehHHhhccccchHHHHHH----------------HHHHHHHhcCCeEEEEeCchhhhccCCCCcchH
Confidence 7532 22222222211110 0 111111 11111 2356789999999422
Q ss_pred --HhHHHHHcccCC----CCCCcEEEEEcCCccccc-c--cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHH
Q 037173 298 --GQIESLIGCLDE----LASGSRVIITTRDKQVLE-N--CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTR 368 (617)
Q Consensus 298 --~~~~~l~~~l~~----~~~gs~IlvTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 368 (617)
.....++..+.. ...+..||.||....... . -.....+.+...+.++..+++...+...... ...+..+
T Consensus 200 ~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~ 277 (357)
T 3d8b_A 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIE 277 (357)
T ss_dssp HHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHH
Confidence 112333333221 123455666775542211 1 1233577899999999999887766322111 1245678
Q ss_pred HHHHHccC-CchHHHHHhh
Q 037173 369 KAIKYAHG-VPLALQVLGR 386 (617)
Q Consensus 369 ~i~~~~~G-~PLai~~~a~ 386 (617)
.|++.+.| .+-.|..+..
T Consensus 278 ~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 278 QIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 88999988 4555655544
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.61 E-value=2e-07 Score=98.90 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=106.0
Q ss_pred CCcc-cchhhH--HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCc--eEEEEechhhhccCCHHHHHH
Q 037173 186 KGLV-GVAWRI--KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEG--SYFALDVREAEETGRIKDLQK 260 (617)
Q Consensus 186 ~~~v-GR~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 260 (617)
+.|+ |..... ..+..+..... ....+.|+|++|+||||||+.+++.....++. .+++. . ..+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----H------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----H------HHHHH
Confidence 4566 655443 23333333222 25678999999999999999999987666533 23333 1 11223
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----HhHHHHHcccCC-CCCCcEEEEEcCCccc---------c
Q 037173 261 ELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----GQIESLIGCLDE-LASGSRVIITTRDKQV---------L 326 (617)
Q Consensus 261 ~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~l~~-~~~gs~IlvTTR~~~v---------~ 326 (617)
++...+... ....+.+.++.++-+|+|||++.. ...+.+...+.. ...|..||+||....- .
T Consensus 174 ~~~~~~~~~----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 174 DLVDSMKEG----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HHHHHHHTT----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred HHHHHHHcc----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 333333221 234444555546789999999532 233334333321 1356788888876321 1
Q ss_pred cccCcceEEEeccCChhHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 327 ENCWVNQIYRMKELVDVDAHKLFCQCAFRGG-HLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 327 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
..+.....+.+++++.++..+++...+.... ..+ .+....|++.++|.+-.+..+
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 1122235788999999999999988763211 112 245677888899988655433
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=3.3e-07 Score=99.38 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=104.8
Q ss_pred cCCCcccchhhHHHHHHHhhhcC---------------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechh
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRS---------------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVRE 248 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 248 (617)
....++|++..++++.+++.... +..+.+.|+|++|+|||++|+.+++... +. .+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in---- 109 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN---- 109 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----
Confidence 44679999999999999986310 1346899999999999999999998762 11 12222
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCC-HHHHHHH--HcCCCeEEEEeCCCCH-----HhHHHHHcccCCCCCCcEEEEEc
Q 037173 249 AEETGRIKDLQKELLSKLLNDGNARN-VESQLNR--LARKKVLLVFDDVNHP-----GQIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 249 ~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~l~~~--L~~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~IlvTT 320 (617)
.+..... .+....+........-.. .....+. ..+++.+|++|+++.. ..+..+...+.. .+..||+++
T Consensus 110 ~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~ 186 (516)
T 1sxj_A 110 ASDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILIC 186 (516)
T ss_dssp TTSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEE
T ss_pred CCCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEE
Confidence 1222221 122222221111100000 0000001 1356789999999532 123333333321 233455554
Q ss_pred CCcc---cccccCcceEEEeccCChhHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHccCCch-HHHHH
Q 037173 321 RDKQ---VLENCWVNQIYRMKELVDVDAHKLFCQCAFRGG-HLDASYTEVTRKAIKYAHGVPL-ALQVL 384 (617)
Q Consensus 321 R~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 384 (617)
.... +.........+.+++++.++..+.+...+.... ... .+....|++.++|.+- ++..+
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 4322 222222346789999999999999887664322 122 2457788999999654 44444
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.57 E-value=2.9e-06 Score=86.07 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=105.6
Q ss_pred cccCCCcccchhhHHHHHHHhh----------hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 182 QSENKGLVGVAWRIKEIESLLC----------IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
+..-..++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+.+++.....| +.........
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhh
Confidence 3445679999999999988772 1112245789999999999999999998754322 2221111111
Q ss_pred c--CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCCeEEEEeCCCCH-------------HhHHHHHcccC---CCCC
Q 037173 252 T--GRIKDLQKELLSKLLNDGNARNVESQLNR-LARKKVLLVFDDVNHP-------------GQIESLIGCLD---ELAS 312 (617)
Q Consensus 252 ~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---~~~~ 312 (617)
. ........ .+.+. -..++.+|+||+++.. .....++..+. ....
T Consensus 90 ~~~g~~~~~~~----------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 90 KWMGESEKLVK----------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp TTGGGHHHHHH----------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred cccchHHHHHH----------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 0 01111111 11111 2456789999999632 11233333222 2244
Q ss_pred CcEEEEEcCCcccccc---cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHHHHh
Q 037173 313 GSRVIITTRDKQVLEN---CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQVLG 385 (617)
Q Consensus 313 gs~IlvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~a 385 (617)
+..||.||........ -.....+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666767765433221 023467788999999999999887743221 11234567888888874 44444443
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.56 E-value=7.5e-07 Score=92.25 Aligned_cols=197 Identities=12% Similarity=0.008 Sum_probs=106.5
Q ss_pred CCCcccchhhHHHHHH---HhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 185 NKGLVGVAWRIKEIES---LLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~---~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
.+.|+|++...+.+.. .+..+....+.+.|+|++|+|||+||+.+++......+ .+.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-FTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-EEEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-cccccchhhhhcccchhHHHHH
Confidence 4679999998777544 44333333468899999999999999999998753322 1122211111112222223333
Q ss_pred HHHHHhc---------------------C---------C-CCCCHHHHHHHH---------cCC----CeEEEEeCCCC-
Q 037173 262 LLSKLLN---------------------D---------G-NARNVESQLNRL---------ARK----KVLLVFDDVNH- 296 (617)
Q Consensus 262 l~~~l~~---------------------~---------~-~~~~~~~l~~~L---------~~k----~~LlVLDdv~~- 296 (617)
.+..... . + .......+++.+ .++ +.+|+||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 2222110 0 0 000011111111 233 45999999963
Q ss_pred -HHhHHHHHcccCCCCCCcEEEEEcC-Cc------------ccccc-cCcceEEEeccCChhHHHHHHHHhhhcCCCCCh
Q 037173 297 -PGQIESLIGCLDELASGSRVIITTR-DK------------QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDA 361 (617)
Q Consensus 297 -~~~~~~l~~~l~~~~~gs~IlvTTR-~~------------~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 361 (617)
.+..+.+...+...... .++++|. .. .+... ......+.+++++.++..+++...+.... ..
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--VE 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--CC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--CC
Confidence 45555565555433333 3444443 11 01000 11224589999999999999988764322 12
Q ss_pred hHHHHHHHHHHHcc-CCchHHHHHh
Q 037173 362 SYTEVTRKAIKYAH-GVPLALQVLG 385 (617)
Q Consensus 362 ~~~~~~~~i~~~~~-G~PLai~~~a 385 (617)
-..+..+.|++.+. |.|-.+..+.
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 33567788999998 8887555433
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.56 E-value=2.5e-06 Score=84.28 Aligned_cols=168 Identities=11% Similarity=0.037 Sum_probs=91.5
Q ss_pred CCcccchhhHHHHHHH-------hhh-cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHH
Q 037173 186 KGLVGVAWRIKEIESL-------LCI-RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~-------L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (617)
..++|....++++... +.. .....+.+.|+|++|+|||+||+.+++.... + .+.+...... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--~-~~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF--P-FIKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC--S-EEEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC--C-EEEEeCHHHh-cCCchHH
Confidence 4578888777766652 221 2345678999999999999999999987432 2 1222211100 0001110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHH-HHcCCCeEEEEeCCCCH------------HhHHHHHcccCC---CCCCcEEEEEcC
Q 037173 258 LQKELLSKLLNDGNARNVESQLN-RLARKKVLLVFDDVNHP------------GQIESLIGCLDE---LASGSRVIITTR 321 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~------------~~~~~l~~~l~~---~~~gs~IlvTTR 321 (617)
.... +..+.+ ....++.+|+||+++.. ..++.+...+.. .+....||.||.
T Consensus 109 ~~~~-------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn 175 (272)
T 1d2n_A 109 KCQA-------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175 (272)
T ss_dssp HHHH-------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES
T ss_pred HHHH-------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC
Confidence 0000 011111 22356789999998532 223333333321 233445677777
Q ss_pred Ccccccc---c-CcceEEEeccCCh-hHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC
Q 037173 322 DKQVLEN---C-WVNQIYRMKELVD-VDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV 377 (617)
Q Consensus 322 ~~~v~~~---~-~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 377 (617)
....... . .....+.+++++. ++..+++.... . . ..+....+++.+.|.
T Consensus 176 ~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 176 RKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp CHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTS
T ss_pred ChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCC
Confidence 6643222 1 1246788999988 56555555421 1 1 245577888888884
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.55 E-value=5e-06 Score=81.47 Aligned_cols=180 Identities=15% Similarity=0.082 Sum_probs=100.5
Q ss_pred CCCcccchhhHHHHHHHhhh---c-------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 185 NKGLVGVAWRIKEIESLLCI---R-------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
-..++|.+..++.+.+++.. . ....+.+.|+|++|+|||++|+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 45689999888888776531 1 12345688999999999999999998754322 2222 211111110
Q ss_pred --HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-----------------HhHHHHHcccCCC--CCC
Q 037173 255 --IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-----------------GQIESLIGCLDEL--ASG 313 (617)
Q Consensus 255 --~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------------~~~~~l~~~l~~~--~~g 313 (617)
....... .+.......+.+|+||+++.. ..+..++..+... ..+
T Consensus 81 ~~~~~~~~~---------------~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 81 GLGAARVRS---------------LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp THHHHHHHH---------------HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ChhHHHHHH---------------HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0011111 111122346789999999753 1223333332221 235
Q ss_pred cEEEEEcCCccccc-cc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHH
Q 037173 314 SRVIITTRDKQVLE-NC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVL 384 (617)
Q Consensus 314 s~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 384 (617)
..||.||....... .. .....+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 56777776543211 11 23467889999999999999887643222 21222235778888888764 44443
No 41
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=5.9e-07 Score=92.50 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=108.4
Q ss_pred ccCCCcccchhhHHHHHHHh-hhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE-----------------
Q 037173 183 SENKGLVGVAWRIKEIESLL-CIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL----------------- 244 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~----------------- 244 (617)
.....++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++..+...-...+.+.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 33467999999999999988 4332 233 899999999999999999986422111111110
Q ss_pred ------echhhhc--cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCc
Q 037173 245 ------DVREAEE--TGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGS 314 (617)
Q Consensus 245 ------~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs 314 (617)
... .+. ... ....++++..+.....-.....+ ..+.+++-++|||+++. ....+.+...+.....++
T Consensus 89 ~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 89 SSPYHLEIT-PSDMGNND-RIVIQELLKEVAQMEQVDFQDSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp ECSSEEEEC-CC----CC-HHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred cccceEEec-HhhcCCcc-hHHHHHHHHHHHHhccccccccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 000 000 000 00122222222111000000000 00234677999999974 344455555544334567
Q ss_pred EEEEEcCCcc-ccccc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhH-HHHHHHHHHHccCCchHHHHHh
Q 037173 315 RVIITTRDKQ-VLENC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASY-TEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 315 ~IlvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLai~~~a 385 (617)
.+|++|.... +.... .....+++.+++.++..+.+...+..... .-. .+.+..|++.++|.+-.+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 7887776543 22211 12368999999999999999877632211 112 3567889999999987554443
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.49 E-value=2e-06 Score=87.32 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=99.5
Q ss_pred CCCcc-cchh--hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 185 NKGLV-GVAW--RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 185 ~~~~v-GR~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
.+.|+ |... ....+..++.........+.|+|++|+||||||+.+++.....-...+++. . ..+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H------HHHHHH
Confidence 44565 5433 233444444433223567899999999999999999998654422234444 1 112222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----HhHHHHHcccCC-CCCCcEEEEEcCCccc---------cc
Q 037173 262 LLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----GQIESLIGCLDE-LASGSRVIITTRDKQV---------LE 327 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~l~~-~~~gs~IlvTTR~~~v---------~~ 327 (617)
+...+... ......+.+. ++.+|++||++.. ...+.+...+.. ...+..||+||..... ..
T Consensus 80 ~~~~~~~~----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 80 MVEHLKKG----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS 154 (324)
T ss_dssp HHHHHHHT----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH
T ss_pred HHHHHHcC----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh
Confidence 22222211 1233333333 4679999999532 222333332211 1245678888764321 11
Q ss_pred ccCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHH
Q 037173 328 NCWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLAL 381 (617)
Q Consensus 328 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 381 (617)
.+.....+++++ +.++..+++...+..... .-..+..+.|++.+ |.+-.+
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHH
Confidence 112236789999 999999999887743221 12246678888888 776543
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.46 E-value=2.7e-06 Score=90.08 Aligned_cols=178 Identities=18% Similarity=0.201 Sum_probs=105.2
Q ss_pred ccCCCcccchhhH---HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHH
Q 037173 183 SENKGLVGVAWRI---KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQ 259 (617)
Q Consensus 183 ~~~~~~vGR~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (617)
..-+.++|.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|. -+. . .......+.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~-a----~~~~~~~ir 92 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS-A----VTSGVKEIR 92 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE-T----TTCCHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE-e----ccCCHHHHH
Confidence 3456799999888 6777777543 3467899999999999999999987643331 111 1 112222221
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH--HhHHHHHcccCCCCCCcEEEE-EcCCcc--ccc-ccCcce
Q 037173 260 KELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP--GQIESLIGCLDELASGSRVII-TTRDKQ--VLE-NCWVNQ 333 (617)
Q Consensus 260 ~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ilv-TTR~~~--v~~-~~~~~~ 333 (617)
.++.... .....+++.+|++|+++.. ...+.++..+.. ....+|. ||.+.. +.. ......
T Consensus 93 -~~~~~a~-----------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 93 -EAIERAR-----------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp -HHHHHHH-----------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred -HHHHHHH-----------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCcee
Confidence 1111110 0112467889999999743 334444444432 2233443 554432 111 112345
Q ss_pred EEEeccCChhHHHHHHHHhhhcCC-----CCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 334 IYRMKELVDVDAHKLFCQCAFRGG-----HLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 334 ~~~l~~L~~~ea~~Lf~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
++.+.+++.++..+++........ ....-..+..+.+++.++|.+-.+..+
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 789999999999999988764311 112234567888999999998755443
No 44
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.45 E-value=2.8e-06 Score=85.60 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=90.3
Q ss_pred CcccchhhHHHHHHHhhhc-------------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccC--c-eEEEEechhhh
Q 037173 187 GLVGVAWRIKEIESLLCIR-------------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE--G-SYFALDVREAE 250 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~ 250 (617)
.++|.+...+.|.+++... ......+.|+|++|+|||+||+.+++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4899999888888766421 234557899999999999999999988644321 1 12222111110
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCC-----------CHHhHHHHHcccCCCCCCcEEEE
Q 037173 251 ETGRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVN-----------HPGQIESLIGCLDELASGSRVII 318 (617)
Q Consensus 251 ~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~-----------~~~~~~~l~~~l~~~~~gs~Ilv 318 (617)
... .......+...+ ..++.+|+||+++ .......+...+.....+..||+
T Consensus 112 ~~~-----------------~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 112 GQY-----------------IGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp CSS-----------------TTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred hhc-----------------ccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 000 000001111111 1145699999997 44455666666555456778888
Q ss_pred EcCCcc----------cccccCcceEEEeccCChhHHHHHHHHhhh
Q 037173 319 TTRDKQ----------VLENCWVNQIYRMKELVDVDAHKLFCQCAF 354 (617)
Q Consensus 319 TTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 354 (617)
||.... +... ....+.+++++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 876432 1222 236899999999999999987764
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.45 E-value=9.5e-06 Score=82.18 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=103.2
Q ss_pred cCCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc-
Q 037173 184 ENKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET- 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 252 (617)
.-.+++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++..........
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKW 86 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhh
Confidence 346789999988888876631 1123467899999999999999999987521 11221211111000
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------HhHHHHHcccCC---CCCCc
Q 037173 253 -GRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------GQIESLIGCLDE---LASGS 314 (617)
Q Consensus 253 -~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~---~~~gs 314 (617)
....... ..+.+.. ..++.+|+||+++.. .....++..+.. ...+.
T Consensus 87 ~g~~~~~~----------------~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 87 LGESEKLV----------------KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp CCSCHHHH----------------HHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred hhHHHHHH----------------HHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 0011111 1222222 357889999999643 112233332221 23455
Q ss_pred EEEEEcCCcccccc-c--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc-hHHHHHhh
Q 037173 315 RVIITTRDKQVLEN-C--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP-LALQVLGR 386 (617)
Q Consensus 315 ~IlvTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~a~ 386 (617)
.||.||..+..... . .....+.++..+.++-.+++..+...... .........|++.+.|.. -.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666654432211 0 23467889999999999999887632221 112355778889998874 34554443
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.41 E-value=4.2e-06 Score=84.92 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=104.1
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
...+.++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+++..... .+.+. .+ ......+ ...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~-~~~~~~i-~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GS-DCKIDFV-RGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TT-TCCHHHH-HTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----cc-ccCHHHH-HHH
Confidence 345779999999999999997432 34578889999999999999999876321 22233 11 1222222 222
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH---HhHHHHHcccCCCCCCcEEEEEcCCcccc-ccc-CcceEEEe
Q 037173 263 LSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP---GQIESLIGCLDELASGSRVIITTRDKQVL-ENC-WVNQIYRM 337 (617)
Q Consensus 263 ~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~~~-~~~~~~~l 337 (617)
+........ ..+++-++++|+++.. +..+.+...+.....+.++|+||....-. ... .....+++
T Consensus 93 ~~~~~~~~~----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 93 LTNFASAAS----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp HHHHHHBCC----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred HHHHHhhcc----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 221111000 1236789999999854 34455554444334567788887764321 111 12257899
Q ss_pred ccCChhHHHHHH-------HHhhhcCCCCChhH-HHHHHHHHHHccCCchHHH
Q 037173 338 KELVDVDAHKLF-------CQCAFRGGHLDASY-TEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 338 ~~L~~~ea~~Lf-------~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLai~ 382 (617)
++++.++-.+++ ...+..... ... .+..+.+++.++|.+-.+.
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHH
Confidence 999988743332 222211111 111 2667888899988876443
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.41 E-value=8.4e-06 Score=83.82 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=102.7
Q ss_pred ccCCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
..-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++..... ++..........
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~ 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh
Confidence 3446799999999999887631 11223468899999999999999999986422 222211111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCHH-------------hHHHHHcccC---CCCCCcE
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHPG-------------QIESLIGCLD---ELASGSR 315 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~-------------~~~~l~~~l~---~~~~gs~ 315 (617)
. .+. ....+..+.... ..++.+|+||+++... ....++..+. ....+..
T Consensus 124 ~-------------~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 124 W-------------MGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp C-----------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred h-------------cch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 0 000 000112222222 3578899999996421 1233333322 1234556
Q ss_pred EEEEcCCccccc-c--cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHHHHh
Q 037173 316 VIITTRDKQVLE-N--CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQVLG 385 (617)
Q Consensus 316 IlvTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~a 385 (617)
||.||....... . -.....+.+...+.++-.+++..+....... ........|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776543211 1 0234678899999999999998876332211 1234567888889884 43454443
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.41 E-value=9.3e-06 Score=86.09 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=106.1
Q ss_pred ccCCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
..-..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++... ...++. ++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~----v~~~ 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFS----ISSS 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEE----ECCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEE----EeHH
Confidence 3456799999999999887631 122346789999999999999999998751 112222 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------HhHHHHHcccCC---CCCCcE
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------GQIESLIGCLDE---LASGSR 315 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~---~~~gs~ 315 (617)
.+ . ....+. ....+..+.+.. ..++.+|+||+++.. .....++..+.. ...+..
T Consensus 203 -~l---~----~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 203 -DL---V----SKWLGE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH---H----hhhcch-HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 10 0 111111 111333343333 457889999999743 123445444432 234566
Q ss_pred EEEEcCCcccccc---cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHHHHh
Q 037173 316 VIITTRDKQVLEN---CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQVLG 385 (617)
Q Consensus 316 IlvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~a 385 (617)
||.||..+..... -.....+.++..+.++-.++|..+...... .........|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777765432211 123457888888888888888887632211 11235567888888885 43444443
No 49
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.40 E-value=1.2e-06 Score=80.78 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=41.6
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999998864 33456789999999999999999998644
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.39 E-value=8.8e-06 Score=81.41 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=102.7
Q ss_pred cccCCCcccchhhHHHHHHHhhhc----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIR----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
+..-..++|.+..++.+.+.+... ....+.+.|+|++|+|||++|+.+++.....| +.+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 344567999999999998877421 12346789999999999999999998753222 1222 111111
Q ss_pred c--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-------------HhHHHHHccc---CCC--C
Q 037173 252 T--GRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-------------GQIESLIGCL---DEL--A 311 (617)
Q Consensus 252 ~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l---~~~--~ 311 (617)
. .........++. .....++.+|+||+++.. .....++..+ ... +
T Consensus 93 ~~~~~~~~~~~~~~~---------------~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 KYVGDGEKLVRALFA---------------VARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp SSCSCHHHHHHHHHH---------------HHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred cccchHHHHHHHHHH---------------HHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 111111111111 112456789999999532 1112222222 111 2
Q ss_pred CCcEEEEEcCCcccccc-c--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHHh
Q 037173 312 SGSRVIITTRDKQVLEN-C--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVLG 385 (617)
Q Consensus 312 ~gs~IlvTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~a 385 (617)
.+..||.||........ . .....+.++..+.++..+++...+..... ....+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777765432211 0 12356788888888888888776532211 1123567788999999876 554443
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.36 E-value=1.2e-05 Score=83.79 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=102.1
Q ss_pred cccCCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 182 QSENKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
+..-..++|.+..++.|.+++.. .....+.+.|+|++|+|||+||+.+++.... .++..+......
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhc
Confidence 34456799999999999987731 1122467899999999999999999887432 222221111110
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------HhHHHHHcccC----CCC
Q 037173 252 TG--RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------GQIESLIGCLD----ELA 311 (617)
Q Consensus 252 ~~--~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l~----~~~ 311 (617)
.. ..... +..+.+.. ...+.+|+||+++.. .....++..+. ...
T Consensus 187 ~~~g~~~~~----------------~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KYVGEGEKL----------------VRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp -----CHHH----------------HHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cccchHHHH----------------HHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00111 11122222 346689999999632 11122222221 112
Q ss_pred CCcEEEEEcCCcccccc---cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch-HHHHHh
Q 037173 312 SGSRVIITTRDKQVLEN---CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL-ALQVLG 385 (617)
Q Consensus 312 ~gs~IlvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~a 385 (617)
....||.||........ -.....+.+...+.++..+++...+.... .....+....+++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556666655332211 12335688999999999999987763221 11224567788999988654 555543
No 52
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.33 E-value=1.1e-05 Score=82.30 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=102.1
Q ss_pred hhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccC---------------------ceEEEEechhhh
Q 037173 192 AWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE---------------------GSYFALDVREAE 250 (617)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~~~~~~ 250 (617)
+...+.+.+.+..+ .-...+.++|++|+|||++|+.+++.+..... ...++... ..+
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGK 85 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccC
Confidence 34455666666432 23457899999999999999999987542211 11221100 000
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcc-ccc
Q 037173 251 ETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQ-VLE 327 (617)
Q Consensus 251 ~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~ 327 (617)
....+..+ +++...+.... ..+++-++|+|+++ +.+..+.+...+....+++.+|++|.+.. +.+
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~-----------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ 153 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA-----------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLA 153 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC-----------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCH
T ss_pred CCCCHHHH-HHHHHHHhhcc-----------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcH
Confidence 01111111 11111111000 12456799999997 34556667766665556777777776653 222
Q ss_pred cc-CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHh
Q 037173 328 NC-WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLG 385 (617)
Q Consensus 328 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a 385 (617)
.. .....+++.+++.++..+.+.... . ...+.+..+++.++|.|..+..+.
T Consensus 154 ti~SRc~~~~~~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 154 TLRSRCRLHYLAPPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HHhhcceeeeCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 11 233679999999999999988765 1 123556789999999998665543
No 53
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=9.9e-06 Score=82.80 Aligned_cols=181 Identities=12% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELL 263 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (617)
-..++|.+..++.|...+..+ +.+.+.++|++|+||||+|+.++..+... +...+.-.+ .+.......+. +.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~~~ir-~~i 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGIDVVR-NQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHHHHH-THH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccHHHHH-HHH
Confidence 356889998899998888643 33338999999999999999999875322 111111111 11112232222 122
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcc-cccc-cCcceEEEecc
Q 037173 264 SKLLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQ-VLEN-CWVNQIYRMKE 339 (617)
Q Consensus 264 ~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~-~~~~~~~~l~~ 339 (617)
..+...... +.+.+-++|+|+++ +.+..+.+...+......+.+|++|.... +... ......+.+.+
T Consensus 98 ~~~~~~~~~---------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 98 KDFASTRQI---------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQP 168 (340)
T ss_dssp HHHHHBCCS---------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred HHHHhhccc---------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccC
Confidence 211110000 12346789999996 34445555555444345667777765432 1111 11235789999
Q ss_pred CChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHH
Q 037173 340 LVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQ 382 (617)
Q Consensus 340 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 382 (617)
++.++..+.+...+-... ..-..+..+.+++.++|.+--+.
T Consensus 169 l~~~~~~~~l~~~~~~~~--~~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEK--LKLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCHHHHHHHHHHHHHTTT--CCBCHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 999999888877652211 11224567889999999887443
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.30 E-value=1.3e-05 Score=80.31 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=100.8
Q ss_pred cCCCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
.-..++|.+..+++|.+++... -...+.+.|+|++|+|||+||+.+++.....| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 3456999999998888876421 23356789999999999999999998754221 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCCeEEEEeCCCCHH----------------hHHHHHcccCC--CCCC
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNR-LARKKVLLVFDDVNHPG----------------QIESLIGCLDE--LASG 313 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~--~~~g 313 (617)
..++. ....+.. ...+..+.+. ....+.+|+||+++... ....++..+.. ...+
T Consensus 82 --~~~l~----~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 82 --GPELL----TMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp --HHHHH----HHHHTTC-TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred --hHHHH----hhhcCch-HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 11121 1222211 1122233332 24578999999997421 12334333321 1345
Q ss_pred cEEEEEcCCccccc-cc----CcceEEEeccCChhHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHccCCchH
Q 037173 314 SRVIITTRDKQVLE-NC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHL-DASYTEVTRKAIKYAHGVPLA 380 (617)
Q Consensus 314 s~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLa 380 (617)
..||.||....... .. .....+.++..+.++-.+++.......... ... ...++..+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 67777776553221 11 234678999999999888887766322111 111 34556667777643
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.29 E-value=1.9e-06 Score=76.41 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=65.5
Q ss_pred CcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 187 GLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++.....-...+ +. ..........
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~-~~~~~~~~~~----------- 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YR-ELTPDNAPQL----------- 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EE-ECCTTTSSCH-----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EE-CCCCCcchhh-----------
Confidence 5899999999999887633333345789999999999999999886422111122 33 2212111111
Q ss_pred hcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 267 LNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 267 ~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
..+.+. ...-.|+||+++. .+....+...+.......++|.||...
T Consensus 69 ---------~~~~~~--a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 69 ---------NDFIAL--AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------HHHHHH--HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hcHHHH--cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111111 1335789999963 344445554444334566788877643
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.23 E-value=0.00012 Score=74.59 Aligned_cols=256 Identities=14% Similarity=0.141 Sum_probs=133.9
Q ss_pred CCCcccchhhHHHHHHHhhhc---CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHH
Q 037173 185 NKGLVGVAWRIKEIESLLCIR---SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKE 261 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (617)
-..++|.+..++.+...+..+ ......+.|+|++|+||||||+.++......|. ... +.+ .....++
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l--- 93 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDM--- 93 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHH---
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHH---
Confidence 456889988888887776532 233467899999999999999999997643221 111 000 1111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HHhHHHHHcccCCCC------------------CCcEEE-EEc
Q 037173 262 LLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PGQIESLIGCLDELA------------------SGSRVI-ITT 320 (617)
Q Consensus 262 l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~------------------~gs~Il-vTT 320 (617)
..+...+ .++-++++|++.. ....+.+...+.... +...++ .|+
T Consensus 94 --------------~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 94 --------------AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp --------------HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred --------------HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 1111111 2345778898853 223333322211100 112222 344
Q ss_pred CCccccccc--CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCchHHHHHhhhh------CCC-
Q 037173 321 RDKQVLENC--WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPLALQVLGRHL------CGR- 391 (617)
Q Consensus 321 R~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~a~~L------~~~- 391 (617)
+...+.... .......+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+..+...+ .+.
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~ 236 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKAD 236 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 433221111 1234588999999999999988763221 12335678999999999997554333222 111
Q ss_pred --CHHHHHHHHHHHccCCCchHHHHHHHcHhcCChhHHHHHhhhh-cccCC-cCHHHHHHhHhhcCCchHHhHH-HHhhC
Q 037173 392 --SKEVWESAMRKLEIIPHVDILKVLKISYDSLDDSQKNVFLDIA-CLLEG-EHRDEVTSFFDASGFQAKIELS-VLEDK 466 (617)
Q Consensus 392 --~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la-~fp~~-~~~~~L~~~w~~~g~~~~~~l~-~L~~~ 466 (617)
+.+..+.++..+.. .-..|+...+..+..++ .|..+ ...+.+......+....++..+ .|...
T Consensus 237 ~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~ 304 (334)
T 1in4_A 237 RINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQA 304 (334)
T ss_dssp SBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHT
T ss_pred CcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 23333333333211 11245555555544333 23222 5566666554443211222222 88899
Q ss_pred CCceEe-CCEEEec
Q 037173 467 SLITCL-NNQIRMH 479 (617)
Q Consensus 467 sLi~~~-~~~~~mH 479 (617)
++++.. .+++-..
T Consensus 305 g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 305 GFLARTPRGRIVTE 318 (334)
T ss_dssp TSEEEETTEEEECH
T ss_pred CCeecccccHHhhH
Confidence 999988 5555433
No 57
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.20 E-value=2.7e-06 Score=81.74 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=38.6
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCC
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
++...|..+++|++|+|+++.+. .+|... .+.+|++|+|+++.|..+ +..+.+|++|+|++++|+.+|.
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLT---VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred cChhhcccCCCcCEEECCCCcCC---ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH
Confidence 34445555566666666555444 444443 555666666666665555 4556666666666666655553
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.17 E-value=2.7e-05 Score=83.24 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=100.1
Q ss_pred CCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 186 KGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
..++|.+..+++|.+++... ....+-|.|+|++|+|||++|+.+++.... .+...+.........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhhc
Confidence 56899999999998877532 234557899999999999999999887532 222222222211100
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-------------HhHHHHHcccCC--CCCCcEEEEE
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-------------GQIESLIGCLDE--LASGSRVIIT 319 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~--~~~gs~IlvT 319 (617)
......+ . ..+.....+++.+|+||+++.. .....++..+.. ...+..||.|
T Consensus 280 -g~~~~~~-~-----------~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaa 346 (489)
T 3hu3_A 280 -GESESNL-R-----------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (489)
T ss_dssp -THHHHHH-H-----------HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEE
T ss_pred -chhHHHH-H-----------HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEe
Confidence 0000000 0 1122223567889999999311 122333333321 1335566667
Q ss_pred cCCcccc-cc----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCC-chHHHH
Q 037173 320 TRDKQVL-EN----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGV-PLALQV 383 (617)
Q Consensus 320 TR~~~v~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~ 383 (617)
|...... .. ......+.+...+.++-.+++..++....... .....++++.+.|. +-.+..
T Consensus 347 Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHH
Confidence 7655321 11 23445789999999999999988763222111 11235566677775 433443
No 59
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.15 E-value=3e-06 Score=77.65 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=70.6
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+.... ...+++..|.++++|++|+|+++.+. .+|..+ .+.+|++|+|+++.|+.+ +..+.+
T Consensus 33 ~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLT---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCC---ccChhHhCCcchhhEEECCCCccceeCHHHhccccC
Confidence 456666665444 33556778899999999999999776 788765 889999999999999988 557899
Q ss_pred eeEEecCCCCccccCCccccc
Q 037173 595 LVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i~~L 615 (617)
|++|+|+++.+.-.|.++.+|
T Consensus 107 L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 107 LTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CSEEECCSSCBCTTBGGGHHH
T ss_pred CCEEEeCCCCcccccccHHHH
Confidence 999999999988877766543
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.13 E-value=1.8e-05 Score=84.44 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=83.0
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhccCCHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 257 (617)
..++++||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+...+ ...++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 4467999999999999998642 233567999999999999999999864422 1122221111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCccc------ccc-c
Q 037173 258 LQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQV------LEN-C 329 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v------~~~-~ 329 (617)
....+ .....+..+.+.+ ..++.+|++| -..+..+.+...+. ....++|.+|..... ... .
T Consensus 246 ------~~~~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 ------TKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ------ccccc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 0011223333333 3567899999 22223333444443 234556666554431 111 1
Q ss_pred CcceEEEeccCChhHHHHHHHHhh
Q 037173 330 WVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 330 ~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.....+.+++.+.++..+++....
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 122468999999999999998755
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.12 E-value=1.2e-05 Score=73.91 Aligned_cols=118 Identities=23% Similarity=0.162 Sum_probs=62.7
Q ss_pred chhhHHHHHHHhhhcC-CCeEEEEEeccCCChhhHHHHHHHHHhhhccC-ceEEEEechhhhccCCHHHHHHHHHHHHhc
Q 037173 191 VAWRIKEIESLLCIRS-AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFE-GSYFALDVREAEETGRIKDLQKELLSKLLN 268 (617)
Q Consensus 191 R~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 268 (617)
....++.+.+++..-. .....+.|+|++|+||||||+.++........ .+.++. ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcC
Confidence 3444445555543211 22468999999999999999999998652222 234433 22333333333322
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEEeCCCC--HH--hHHHHHcccCCC-CCCcEEEEEcCCc
Q 037173 269 DGNARNVESQLNRLARKKVLLVFDDVNH--PG--QIESLIGCLDEL-ASGSRVIITTRDK 323 (617)
Q Consensus 269 ~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~--~~~~l~~~l~~~-~~gs~IlvTTR~~ 323 (617)
.... .+.+.+. ++-+|||||++. .+ ..+.+...+... ..|..+|+||...
T Consensus 89 ~~~~----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2111 2333333 456899999962 21 212222222111 2567888888753
No 62
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=9.7e-05 Score=75.96 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=102.2
Q ss_pred cCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
.-+++.|.++..++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +..........
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc
Confidence 346688999999988876531 223356789999999999999999999865433 22222222111
Q ss_pred C--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CC
Q 037173 253 G--RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--AS 312 (617)
Q Consensus 253 ~--~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~ 312 (617)
. ......++++.. .-...+++|++|+++.. ..+..++..+... ..
T Consensus 222 ~vGese~~vr~lF~~---------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 222 YIGEGSRMVRELFVM---------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp STTHHHHHHHHHHHH---------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ccchHHHHHHHHHHH---------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 1 112222222221 11457899999999631 0133344333322 34
Q ss_pred CcEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHccCCc
Q 037173 313 GSRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHL-DASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 313 gs~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~G~P 378 (617)
+..||.||..+..... ...+..+.++..+.++-.++|..+.-+.... ... .+.|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 5566777766543321 1355788999999998899998776322211 111 466778888764
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.10 E-value=1e-05 Score=93.14 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=82.5
Q ss_pred ccCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhc----c
Q 037173 183 SENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEE----T 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~----~ 252 (617)
...++++||+.++..+.+.+... ..+.+.|+|++|+|||+||+.+++.+.... ...++..+...... .
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 34567999999999999998643 234578999999999999999999864321 22333332211110 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHc--CCCeEEEEeCCCCHH----------hHHHHHcccCCCCCCcEEEEEc
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRLA--RKKVLLVFDDVNHPG----------QIESLIGCLDELASGSRVIITT 320 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~----------~~~~l~~~l~~~~~gs~IlvTT 320 (617)
...... +..+.+.+. +++.+|++|+++... ..+.+...+. ..+..+|.+|
T Consensus 245 g~~~~~----------------l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at 306 (854)
T 1qvr_A 245 GEFEER----------------LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGAT 306 (854)
T ss_dssp -CHHHH----------------HHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEE
T ss_pred hHHHHH----------------HHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEec
Confidence 011111 122222232 367899999996432 1112222222 2334455555
Q ss_pred CCccc-----cccc-CcceEEEeccCChhHHHHHHHHh
Q 037173 321 RDKQV-----LENC-WVNQIYRMKELVDVDAHKLFCQC 352 (617)
Q Consensus 321 R~~~v-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 352 (617)
..... .... .....+.+++++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43221 1111 11235899999999999998754
No 64
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00015 Score=75.67 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=101.4
Q ss_pred cCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
.-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +......+...
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 345678999999988876631 123457899999999999999999999865432 22222222111
Q ss_pred -CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCC--CCC
Q 037173 253 -GR-IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDE--LAS 312 (617)
Q Consensus 253 -~~-~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~~~ 312 (617)
.+ .....+.++.. .-...+++|++|+++.. ..+..++..+.. ...
T Consensus 255 ~~Gese~~ir~~F~~---------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 255 YIGESARIIREMFAY---------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSSHHHHHHHHHHHH---------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred cchHHHHHHHHHHHH---------------HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 11 11222222111 12467899999999631 113334443322 234
Q ss_pred CcEEEEEcCCcccccc-c----CcceEEEeccCChhHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHccCCc
Q 037173 313 GSRVIITTRDKQVLEN-C----WVNQIYRMKELVDVDAHKLFCQCAFRGGH-LDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 313 gs~IlvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 378 (617)
+..||.||..+..... . ..+..+.++..+.++-.++|..+.-+... .... ...+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 5567777766543321 1 24567888888888888888877633221 1112 456777787764
No 65
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.06 E-value=1.3e-05 Score=75.19 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCcccchh----hHHHHHHHhhhcCCC--eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHH
Q 037173 185 NKGLVGVAW----RIKEIESLLCIRSAG--VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDL 258 (617)
Q Consensus 185 ~~~~vGR~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (617)
-++|++... .++.+.+++...... .+.+.|+|++|+|||+||+.+++.........+++. . ..+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~----~------~~~ 93 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY----V------PEL 93 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----H------HHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----h------HHH
Confidence 455776543 344555555433221 267899999999999999999998766555556655 1 122
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCC--HH------hHHHHHcccCCCCCCcEEEEEcCC
Q 037173 259 QKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNH--PG------QIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 259 ~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~------~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
...+...... .....+.+.+.+. -+|||||++. .. .+..+.... ...+.++|+||..
T Consensus 94 ~~~~~~~~~~----~~~~~~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~--~~~~~~~i~tsn~ 158 (202)
T 2w58_A 94 FRELKHSLQD----QTMNEKLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYR--MFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHHC-------CCCHHHHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHH--HHTTCCEEEEESS
T ss_pred HHHHHHHhcc----chHHHHHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHH--HhCCCCEEEEcCC
Confidence 3333222211 1123334444433 3999999953 21 122222111 0245578888874
No 66
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.06 E-value=8.1e-06 Score=77.84 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=61.9
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+.... ...+.+..|.++++|++|+|+++.+. .+|..+ .+.+|++|+|+++.|..+ +..+.+
T Consensus 56 ~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 56 KKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNKIT---ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCCCcCC---ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 455565555433 22445667888888888888888666 777765 788888888888888877 557888
Q ss_pred eeEEecCCCCccccCCc
Q 037173 595 LVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~ 611 (617)
|++|+|++++|+.+|.+
T Consensus 130 L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCEEECCSSCCSCCCTT
T ss_pred CCEEECCCCcCCEECHH
Confidence 88888888888887764
No 67
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.05 E-value=8.8e-06 Score=78.12 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=68.5
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+..... ..+.+..|..+++|++|+|+++.+. .+|... .+.+|++|+|+++.|+.+ ...+.+
T Consensus 40 ~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~N~l~---~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQI---TKLEPGVFDSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCcc---CccCHHHhhCccCCcEEECCCCCCC---CcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 4566666665443 3455677888999999999988765 777654 788899999999988888 357889
Q ss_pred eeEEecCCCCccccCCccccc
Q 037173 595 LVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i~~L 615 (617)
|++|+|++++|+.+|.++..+
T Consensus 114 L~~L~Ls~N~l~~lp~~~~~l 134 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIERL 134 (229)
T ss_dssp CCEEECCSSCCCSCCTTGGGC
T ss_pred hCeEeccCCcccccCcccccC
Confidence 999999999999988876544
No 68
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.03 E-value=9.3e-06 Score=74.39 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=64.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
+.++.+.+..... ..++...|.++++|++|+|+++.+. .+|... .+.+|++|+++++.+..+ ...+.+
T Consensus 28 ~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSQNQIQ---SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCcc---cEeCHHHhcCcccccEEECCCCcce---EeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 4566666654432 3456667888888888888888665 666654 788888888888888887 357888
Q ss_pred eeEEecCCCCccccCCcc
Q 037173 595 LVSLKCLSAKLNNFGMMF 612 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i 612 (617)
|++|+|++++++.+|.++
T Consensus 102 L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGI 119 (177)
T ss_dssp CCEEECCSSCCSCCCTTT
T ss_pred cCEEECcCCcceEeCHHH
Confidence 888888888888887754
No 69
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.03 E-value=7.7e-06 Score=78.01 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=58.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+.... ...++...|.++++|++|+|+++.+. .+|.. + .+.+|++|+|+++.|..+ +..+.+
T Consensus 57 ~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 57 PQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNRLE---NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCC---CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred CCCCEEECCCCc---CCEECHHHhCCCCCCCEEECCCCccC---ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 445555554333 22445556777788888888777655 55554 4 777888888888887777 557788
Q ss_pred eeEEecCCCCcccc-CCccc
Q 037173 595 LVSLKCLSAKLNNF-GMMFR 613 (617)
Q Consensus 595 L~~L~l~~t~i~~L-p~~i~ 613 (617)
|++|+|++++|+.+ |..+.
T Consensus 131 L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTT
T ss_pred CCEEECCCCcCCEECHHHhc
Confidence 88888888887777 44444
No 70
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=4.8e-05 Score=76.18 Aligned_cols=145 Identities=11% Similarity=0.063 Sum_probs=90.9
Q ss_pred cchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh---hccCceEEEEechhhhc-cCCHHHHHHHHHHH
Q 037173 190 GVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS---RCFEGSYFALDVREAEE-TGRIKDLQKELLSK 265 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~-~~~~~~l~~~l~~~ 265 (617)
|-+..++.|.+.+..+. .+.+.++|++|+||||+|..+++... ........+. .+. ...+..+ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHH-HHHHHH
Confidence 44566777888776443 67899999999999999999998532 1123334433 111 2233322 223333
Q ss_pred HhcCCCCCCHHHHHHHHcCCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc-ccccccCcceEEEeccCCh
Q 037173 266 LLNDGNARNVESQLNRLARKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK-QVLENCWVNQIYRMKELVD 342 (617)
Q Consensus 266 l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~~~~~~~~l~~L~~ 342 (617)
+.... ..+++-++|+|+++ +.+..+.++..+....+.+.+|++|.++ .+.+..... .+++.+++.
T Consensus 74 ~~~~p-----------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 74 LNYSP-----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp HTSCC-----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred Hhhcc-----------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 22111 02456699999997 4556677777776556677777776544 344433344 899999999
Q ss_pred hHHHHHHHHhh
Q 037173 343 VDAHKLFCQCA 353 (617)
Q Consensus 343 ~ea~~Lf~~~~ 353 (617)
++..+.+....
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.01 E-value=4e-06 Score=94.74 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=31.5
Q ss_pred CCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCccc
Q 037173 546 KMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 546 ~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~ 613 (617)
++++|++|+|+++.+. .+|..+ .|.+|++|+|+++.|..+ ++.|.+|++|+|++|.|..+|.++.
T Consensus 245 ~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~ 313 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFG 313 (727)
T ss_dssp GCCSCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTT
T ss_pred CCCCCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhh
Confidence 4444555555444433 444444 444555555555554444 4444555555555554544544443
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00014 Score=75.80 Aligned_cols=173 Identities=12% Similarity=0.146 Sum_probs=101.2
Q ss_pred ccCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
..-.++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||+++++..... ++......+..
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~ 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQ 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhh
Confidence 3446788999999998875431 12346788999999999999999999986433 22222222211
Q ss_pred c-C-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--C
Q 037173 252 T-G-RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--A 311 (617)
Q Consensus 252 ~-~-~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~ 311 (617)
. . ......+.++.. .-...+++|++|+++.. ..+..++..+... .
T Consensus 254 ~~vGese~~ir~lF~~---------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFAL---------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp SCSSHHHHHHHHHHHH---------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred cccchHHHHHHHHHHH---------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 1 1 112222222221 11357899999999521 0123344444322 2
Q ss_pred CCcEEEEEcCCcccccc-c----CcceEEEeccCChhHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHccCCc
Q 037173 312 SGSRVIITTRDKQVLEN-C----WVNQIYRMKELVDVDAHKLFCQCAFRGGH-LDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 312 ~gs~IlvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 378 (617)
.+..||.||..+..... . ..+..+.++..+.++-.++|..+.-.-.. ..-. .+.|++.+.|.-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 34456667766544321 1 34567889988888888888776533221 1111 456777787753
No 73
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.01 E-value=8.6e-06 Score=74.26 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=67.4
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+.... ...+++..|.++++|++|+|+++.+. .+|... .+.+|++|+|+++.|+.+ +..+.+
T Consensus 30 ~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLT---VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcC---ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCC
Confidence 456666665443 33566778999999999999999776 777765 889999999999999988 458999
Q ss_pred eeEEecCCCCccccCCcc
Q 037173 595 LVSLKCLSAKLNNFGMMF 612 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i 612 (617)
|++|+|+++.+.-.+.++
T Consensus 104 L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 104 LTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CCEEECCSSCBCTTBGGG
T ss_pred CCEEEeCCCCCCCCchhH
Confidence 999999999776555443
No 74
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.98 E-value=3.3e-05 Score=77.52 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHhhh------------cCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCI------------RSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..++|++..++.+...+.. .......+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999988877753 11234568899999999999999999876
No 75
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.98 E-value=1.2e-05 Score=76.69 Aligned_cols=84 Identities=23% Similarity=0.138 Sum_probs=69.4
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
+.++.+.+.... ...++...|..+++|++|+|+++.+. .+ |..+ .+.+|++|+|+++.|..+ ...+.+
T Consensus 32 ~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCSSCCC---EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCCCcCC---CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 456777766554 33566678999999999999999776 55 6677 999999999999999999 357999
Q ss_pred eeEEecCCCCccccCC
Q 037173 595 LVSLKCLSAKLNNFGM 610 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~ 610 (617)
|++|+|++++|+.++.
T Consensus 106 L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 106 LQLLLLNANKINCLRV 121 (220)
T ss_dssp CCEEECCSSCCCCCCT
T ss_pred CCEEECCCCCCCEeCH
Confidence 9999999999998853
No 76
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.97 E-value=1.3e-05 Score=74.64 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=62.6
Q ss_pred ceEEEEeeccccccccccCh-hhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 522 AIKGISLDMNKVNRKIHMDS-FAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~-~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
.++.+.+..... ..++. ..|..+++|++|+|+++.+. .+ |..+ .+.+|++|+|+++.|+.+ +..+.+
T Consensus 30 ~l~~L~l~~n~i---~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNEL---GRISSDGLFGRLPHLVKLELKRNQLT---GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCCC---CSBCCSCSGGGCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCcC---CccCCccccccCCCCCEEECCCCCCC---CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 556666554432 23333 35888999999999888765 55 5667 888999999999998888 457889
Q ss_pred eeEEecCCCCcccc-CCccc
Q 037173 595 LVSLKCLSAKLNNF-GMMFR 613 (617)
Q Consensus 595 L~~L~l~~t~i~~L-p~~i~ 613 (617)
|++|+|++++|+.+ |..+.
T Consensus 104 L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp CCEEECCSSCCCEECTTSST
T ss_pred CCEEECCCCcCCeeCHHHhh
Confidence 99999999988876 44443
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00021 Score=74.45 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=100.1
Q ss_pred CCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc-
Q 037173 185 NKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET- 252 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 252 (617)
-.++.|.++..++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +......+...
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 35688999999998875531 223467889999999999999999999865433 22222222111
Q ss_pred CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CCC
Q 037173 253 GR-IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--ASG 313 (617)
Q Consensus 253 ~~-~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~g 313 (617)
.+ .....+.++.. .-...+++|++|+++.. ..+..++..+... ..+
T Consensus 284 vGesek~ir~lF~~---------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 284 VGEGARMVRELFEM---------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SSHHHHHHHHHHHH---------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CCHHHHHHHHHHHH---------------HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 11 12222222211 12467899999999631 0122233333222 234
Q ss_pred cEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHccCCc
Q 037173 314 SRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHL-DASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 314 s~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~G~P 378 (617)
..||.||........ ......+.++..+.++-.++|..+.-.-... .-. .+.|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 456667765443221 1356788999989998889998776332211 111 456777888764
No 78
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.97 E-value=1.7e-05 Score=73.99 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=66.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+...... .++ ..|..+++|++|+|+++.+. .++.. + .+.+|++|+|+++.|..+ +..+.+
T Consensus 31 ~~l~~L~L~~n~i~---~ip-~~~~~l~~L~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQFT---LVP-KELSNYKHLTLIDLSNNRIS---TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSCCC---SCC-GGGGGCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCEEECCCCcCc---hhH-HHhhcccCCCEEECCCCcCC---EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 45667766654432 333 67899999999999998766 66654 5 889999999999999888 568899
Q ss_pred eeEEecCCCCccccCCc
Q 037173 595 LVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~ 611 (617)
|++|+|++++|+.+|.+
T Consensus 104 L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEG 120 (193)
T ss_dssp CCEEECCSSCCCBCCTT
T ss_pred CCEEECCCCCCCeeChh
Confidence 99999999999998875
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=8.6e-05 Score=84.44 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=88.0
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc------cCceEEEEechhhhc----cC
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC------FEGSYFALDVREAEE----TG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~----~~ 253 (617)
..+.++||+.+++.+.+.|... ...-+.|+|++|+|||++|+.+++.+... ....++..+...... ..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 4567999999999999998643 33457899999999999999999985332 233344332221110 11
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH----------HhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP----------GQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
...... ..+.+.+ ..++.+|++|+++.. .+...++..+.. ..+..+|.+|..
T Consensus 262 ~~e~~l----------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 262 DFEKRF----------------KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp CHHHHH----------------HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred hHHHHH----------------HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 112122 2222233 235789999999743 222223322222 234566666654
Q ss_pred ccccc-------ccCcceEEEeccCChhHHHHHHHHhh
Q 037173 323 KQVLE-------NCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 323 ~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
..... .......+.+++.+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32110 01122468999999999988887654
No 80
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.95 E-value=4.9e-05 Score=76.39 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCcccchhhHHHHHHHhhhcC-------CCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 186 KGLVGVAWRIKEIESLLCIRS-------AGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 458899999998888776321 12357999999999999999999998644
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00015 Score=75.56 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=94.7
Q ss_pred cCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..........
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~ 245 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHK 245 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcc
Confidence 345688999999988876631 223456789999999999999999999864332 22222221111
Q ss_pred -C-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCC--CCC
Q 037173 253 -G-RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDE--LAS 312 (617)
Q Consensus 253 -~-~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~~~ 312 (617)
. ......+.++.. .-...++++++|+++.. ..+..++..+.. ...
T Consensus 246 ~~Ge~e~~ir~lF~~---------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRL---------------ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp SCSHHHHHHHHHHHH---------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred ccchhHHHHHHHHHH---------------HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 1 112222222211 12457899999999421 113333333321 234
Q ss_pred CcEEEEEcCCccccc-----ccCcceEEEeccCCh-hHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHccCCc
Q 037173 313 GSRVIITTRDKQVLE-----NCWVNQIYRMKELVD-VDAHKLFCQCAFRGGH-LDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 313 gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 378 (617)
+..||.||....... ....+..++++.++. ++-.++|..+.-+... .... .+.+++.+.|.-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 556777776554322 112345677866654 4445566555432221 1112 456777777753
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.95 E-value=9.5e-06 Score=90.00 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=53.2
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCCe
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAENL 595 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~L 595 (617)
.++.+.+.... ...+++..|.++++|++|+|+++.+. .+|.+ + .+.+|++|+|+++.|+.+ ...|.+|
T Consensus 53 ~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 45555554433 23455566777777777777777555 56554 4 677777777777777766 3467777
Q ss_pred eEEecCCCCccccCC
Q 037173 596 VSLKCLSAKLNNFGM 610 (617)
Q Consensus 596 ~~L~l~~t~i~~Lp~ 610 (617)
++|+|++|+|+.+|.
T Consensus 127 ~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 127 QKLVAVETNLASLEN 141 (635)
T ss_dssp CEEECTTSCCCCSTT
T ss_pred CEEECCCCcCCCCCh
Confidence 777777777776664
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.95 E-value=1.9e-05 Score=74.29 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+..... ..++...|..+++|++|+|+++.+. .+|... .+.+|++|+++++.+..+ +..+.
T Consensus 51 l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 51 LTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNLSTNQLQ---SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124 (208)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcEEECCCCcc---CccChhhcCCCCCcCEEECCCCcCC---ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC
Confidence 34556665554432 2445556777777777777777655 555543 677777777777777776 34677
Q ss_pred CeeEEecCCCCccccCCc
Q 037173 594 NLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~ 611 (617)
+|++|+|++++++.+|.+
T Consensus 125 ~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp TCCEEECCSSCCSCCCTT
T ss_pred cCCEEECCCCccceeCHH
Confidence 777777777777776654
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.94 E-value=1.8e-05 Score=71.74 Aligned_cols=83 Identities=20% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccc-cCCCC-CCCCceEEEecCCCCccc-----cccc
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVS-HLDGV-LFAELRHLEWQQYPLKTL-----NIHA 592 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~-lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l 592 (617)
.+.++.+.+...... .+ ..|..+++|++|+|+++.+. . +|..+ .+.+|++|++++|.++.+ +..+
T Consensus 48 l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 48 FVNLEFLSLINVGLI---SV--SNLPKLPKLKKLELSENRIF---GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119 (168)
T ss_dssp GGGCCEEEEESSCCC---CC--SSCCCCSSCCEEEEESCCCC---SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred CCCCCEEeCcCCCCC---Ch--hhhccCCCCCEEECcCCcCc---hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence 345566666544432 11 56677777777777777655 3 44444 577777777777777664 4567
Q ss_pred CCeeEEecCCCCccccCC
Q 037173 593 ENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 593 ~~L~~L~l~~t~i~~Lp~ 610 (617)
.+|++|+|++|.+..+|.
T Consensus 120 ~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 120 ECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SCCCEEECCSSGGGTSTT
T ss_pred CCCCEEEeeCCcCcchHH
Confidence 777777777777777765
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.92 E-value=1.9e-05 Score=74.37 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=70.7
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
++++.+.+..... ..++...|.++++|++|+|+++.+. .+|... .+.+|++|+++++.+..+ +..+.+
T Consensus 28 ~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSL---KSLPNGVFDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCcc---CcCChhhhcccccCcEEECCCCccC---ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 4577777665543 3566778899999999999999766 777664 899999999999999988 468999
Q ss_pred eeEEecCCCCccccCCc
Q 037173 595 LVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~ 611 (617)
|++|+|++++|+.+|.+
T Consensus 102 L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCEEECCSSCCCCCCTT
T ss_pred CCEEEcCCCcCcccCHh
Confidence 99999999999998875
No 86
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00037 Score=71.92 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=99.6
Q ss_pred cCCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 184 ENKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
.-.++.|.++..++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +......+...
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 345678999999988876531 123357799999999999999999999865433 22222222111
Q ss_pred -C-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCC--CCC
Q 037173 253 -G-RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDE--LAS 312 (617)
Q Consensus 253 -~-~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~~~ 312 (617)
. ......+.++.. .-...+++|++|+++.. ..+..++..+.. ...
T Consensus 256 ~vGesek~ir~lF~~---------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKV---------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp SSSHHHHHHHHHHHH---------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred cCchHHHHHHHHHHH---------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1 112222222221 11457899999998521 112333333321 234
Q ss_pred CcEEEEEcCCcccccc-c----CcceEEEeccCChhHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHccCCc
Q 037173 313 GSRVIITTRDKQVLEN-C----WVNQIYRMKELVDVDAHKLFCQCAFRGGH-LDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 313 gs~IlvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 378 (617)
+..||.||........ . ..+..+.++..+.++-.++|..+.-.-.. .... .+.|++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 5566777765544332 1 24467888888888888888877632221 1112 456777777753
No 87
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.90 E-value=2e-05 Score=72.04 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=54.6
Q ss_pred CCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc---c-cccCCeeEEecCCCCccccCCc
Q 037173 548 PKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL---N-IHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 548 ~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L---i-~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
+.|++|+|+++.+. .+ |..+ .+.+|++|+|+++.|+.+ + ..+.+|++|+|++++|+.+|.+
T Consensus 33 ~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQIT---KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCCcc---ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 88999999999776 66 4566 999999999999999999 3 5899999999999999999986
No 88
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=0.00011 Score=71.63 Aligned_cols=179 Identities=14% Similarity=0.066 Sum_probs=93.3
Q ss_pred ccCCCcccchhhHHHHHHHhhh--c--------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI--R--------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
..-++++|.+..++++.+.+.. . ....+-+.|+|++|+||||||+.+++.....| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3456789999888877765431 1 01234588999999999999999998753222 2222 1111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCCeEEEEeCCCCH----------------HhHHHHHcccCC--CCCC
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNR-LARKKVLLVFDDVNHP----------------GQIESLIGCLDE--LASG 313 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~~~g 313 (617)
. .. .....+..+.+. ....+.++++|+++.. ..+..++..+.. ...+
T Consensus 85 ~-------------~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 85 F-------------VG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp C-------------CC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred h-------------hh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0 00 000011122222 2346789999998311 122333332221 1345
Q ss_pred cEEEEEcCCcccc-ccc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccC-CchHHH
Q 037173 314 SRVIITTRDKQVL-ENC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHG-VPLALQ 382 (617)
Q Consensus 314 s~IlvTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~ 382 (617)
..||.||...... ... .....+.++..+.++-.+++....-.....++ .....++..+.| ++--|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHH
Confidence 5677777655322 111 23457788888888888887766522111111 113446666777 554444
No 89
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.88 E-value=1.3e-05 Score=71.08 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccc-cCCCC-CCCCceEEEecCCCCccc-----cccc
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVS-HLDGV-LFAELRHLEWQQYPLKTL-----NIHA 592 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~-lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l 592 (617)
.+.++.+.+...... .+ ..|..+++|++|+|+++.+. . +|..+ .+.+|++|+++++.++.+ ++.+
T Consensus 41 l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 41 FEELEFLSTINVGLT---SI--ANLPKLNKLKKLELSDNRVS---GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCCEEECTTSCCC---CC--TTCCCCTTCCEEECCSSCCC---SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred cCCCcEEECcCCCCC---Cc--hhhhcCCCCCEEECCCCccc---chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 355666666544332 11 56777788888888877655 3 44444 577888888888887765 5677
Q ss_pred CCeeEEecCCCCccccCC
Q 037173 593 ENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 593 ~~L~~L~l~~t~i~~Lp~ 610 (617)
.+|++|++++|++..+|.
T Consensus 113 ~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 113 ENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTCCEEECTTCGGGGSTT
T ss_pred CCCCEEeCcCCcccchHH
Confidence 788888888888777765
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.88 E-value=2.4e-05 Score=77.99 Aligned_cols=89 Identities=21% Similarity=0.139 Sum_probs=69.8
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc---c-cccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL---N-IHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L---i-~~l~ 593 (617)
...++.+.+.... ...++...|.++++|+.|+|+++.+. .+|..+ .+.+|++|+|+++.++.+ + ..+.
T Consensus 99 l~~L~~L~l~~N~---l~~l~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 99 LPALTVLDVSFNR---LTSLPLGALRGLGELQELYLKGNELK---TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp CTTCCEEECCSSC---CCCCCSSTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred CCCCCEEECCCCc---CcccCHHHHcCCCCCCEEECCCCCCC---ccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 4556666665543 23556677889999999999998766 677765 788999999999999988 3 4689
Q ss_pred CeeEEecCCCCccccCCcccc
Q 037173 594 NLVSLKCLSAKLNNFGMMFRY 614 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~i~~ 614 (617)
+|++|+|++++|+.+|.++..
T Consensus 173 ~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 173 NLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp TCCEEECCSSCCCCCCTTTTT
T ss_pred CCCEEECCCCcCCccChhhcc
Confidence 999999999999999987654
No 91
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.87 E-value=2.6e-05 Score=76.61 Aligned_cols=49 Identities=24% Similarity=0.144 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+.++|.+..+.++.+.+..-......|.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999988877653222334678999999999999999998643
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.87 E-value=2.7e-05 Score=75.71 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=44.8
Q ss_pred ccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCccccCC
Q 037173 538 HMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 538 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
.++...|..+++|++|+|+++.+. .+|... .+.+|++|+|+++.|+.+ +..+.+|++|+|++++++.+|.
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLK---SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccChhHhcccCCCCEEEcCCCcCC---CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 344455666666666666666554 555543 566777777777776666 4466777777777777766654
No 93
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.87 E-value=5.2e-06 Score=73.38 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=34.7
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
-.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 458999999999988875322223457899999999999999998753
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.86 E-value=1.3e-05 Score=72.66 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=33.8
Q ss_pred hcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-c---ccccCCeeEEecCCCCccccC
Q 037173 544 FSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-L---NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 544 ~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-L---i~~l~~L~~L~l~~t~i~~Lp 609 (617)
+.++++|++|+|+++.+. .+ ..+ .+.+|++|++++|.+.. + ...+.+|++|+|++|+|+.+|
T Consensus 45 ~~~l~~L~~L~l~~n~l~---~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLI---SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111 (168)
T ss_dssp CGGGGGCCEEEEESSCCC---CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSG
T ss_pred HHhCCCCCEEeCcCCCCC---Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcch
Confidence 455556666666655444 22 344 55556666666665555 3 234556666666666555554
No 95
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.86 E-value=7e-05 Score=85.07 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=83.4
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc------CceEEEEechhhhccCCHHH
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF------EGSYFALDVREAEETGRIKD 257 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 257 (617)
..+.++||+.+++.+...|... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 4467999999999999998642 233578999999999999999999863321 222221111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCccc------cccc-
Q 037173 258 LQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQV------LENC- 329 (617)
Q Consensus 258 l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v------~~~~- 329 (617)
.....+ .....+..+.+.. ..++.+|++| ...+....+...+. ....++|.||..... ....
T Consensus 245 -----g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 -----GTKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -----cccccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 000000 0111233333332 3677899999 22223333444443 234566666654431 1110
Q ss_pred CcceEEEeccCChhHHHHHHHHhh
Q 037173 330 WVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 330 ~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.....+.++..+.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112568999999999999998654
No 96
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=1.6e-05 Score=87.04 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=54.1
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l~~ 594 (617)
..++.+.+...... .+ +..|..+++|++|+|+++.+. .+| .+ .+.+|++|+|+++.|..+ ++.|.+
T Consensus 463 ~~L~~L~Ls~N~l~---~l-p~~~~~l~~L~~L~Ls~N~l~---~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 463 LLVTHLDLSHNRLR---AL-PPALAALRCLEVLQASDNALE---NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp TTCCEEECCSSCCC---CC-CGGGGGCTTCCEEECCSSCCC---CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ccCcEeecCccccc---cc-chhhhcCCCCCEEECCCCCCC---CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 34555555544321 22 246677777777777777655 466 56 777777777777776654 556777
Q ss_pred eeEEecCCCCccccCCccc
Q 037173 595 LVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i~ 613 (617)
|++|+|++++++.+|..+.
T Consensus 535 L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCEEECTTSGGGGSSSCTT
T ss_pred CCEEEecCCcCCCCccHHH
Confidence 7777777777777766543
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.84 E-value=3.2e-05 Score=75.19 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=46.1
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+..... ..++...|..+++|++|+|+++.+. .+|... .+.+|++|+|+++.|+.+ ...+.+
T Consensus 59 ~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 59 TKLTWLNLDYNQL---QTLSAGVFDDLTELGTLGLANNQLA---SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCEEECCCCcC---CccCHhHhccCCcCCEEECCCCccc---ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 4455555443322 2334445566666666666666544 444333 556666666666666655 235666
Q ss_pred eeEEecCCCCccccCC
Q 037173 595 LVSLKCLSAKLNNFGM 610 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~ 610 (617)
|++|+|++++|+.+|.
T Consensus 133 L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 133 LKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCEEECCSSCCCCCCT
T ss_pred ccEEECcCCcCCccCH
Confidence 6666666666666554
No 98
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.84 E-value=0.00042 Score=73.44 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCcccchhhHHHHHHHhhh--c--------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC-
Q 037173 185 NKGLVGVAWRIKEIESLLCI--R--------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG- 253 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~- 253 (617)
..+++|.+..++++.+.+.. . ..-.+-+.|+|++|+|||+||+.++......| +.+. ........
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh
Confidence 45689999888887776531 1 11134588999999999999999998754322 2222 22211111
Q ss_pred CH-HHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH----------------HhHHHHHcccCC--CCCCc
Q 037173 254 RI-KDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP----------------GQIESLIGCLDE--LASGS 314 (617)
Q Consensus 254 ~~-~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~~~gs 314 (617)
.. ..-.+ ..+.....+.+.+|+||+++.. ..+..++..+.. ...+.
T Consensus 91 g~~~~~~r---------------~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 91 GVGAARVR---------------DLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp THHHHHHH---------------HHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred cccHHHHH---------------HHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 00000 1122233467899999999531 123344433321 12456
Q ss_pred EEEEEcCCcccccc-c----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 315 RVIITTRDKQVLEN-C----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 315 ~IlvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
.||.||..+..... . .....+.++..+.++-.+++..+.-......+. ....+++.+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 67777776543321 1 234578888888888888887665322211111 1445788888887
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.84 E-value=3.1e-05 Score=73.74 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=67.2
Q ss_pred ceEEEEeecccccccccc-ChhhhcCCCCceEEEEecccCccccccCC-CC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 522 AIKGISLDMNKVNRKIHM-DSFAFSKMPKLRFLKFYGFENKCMVSHLD-GV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~-~~~~~~~~~~LrvL~l~~~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
.++.+.+..... ..+ +...|.++++|++|+|+++.+. .++. .+ .+.+|++|+|+++.+..+ +..+.+
T Consensus 33 ~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSNNKIT---DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TCSEEECCSSCC---CEECCCCCGGGCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCEEEcCCCcC---CccCchhhhccCCCCCEEECCCCcCC---EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 345555554432 223 3456899999999999999776 6666 56 999999999999999998 558999
Q ss_pred eeEEecCCCCcccc-CCccc
Q 037173 595 LVSLKCLSAKLNNF-GMMFR 613 (617)
Q Consensus 595 L~~L~l~~t~i~~L-p~~i~ 613 (617)
|++|+|++++|+.+ |..+.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp CCEEECTTSCCCCBCTTSST
T ss_pred CCEEECCCCcCCeECHhHcC
Confidence 99999999999988 44443
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.83 E-value=2.6e-05 Score=80.40 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=30.4
Q ss_pred hhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCccccCC
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
...|.++++|+.|+|+++.+. .+|.. + .+.+|++|+|+++.|..+ +..+.+|++|+|++++|+.+|.
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 81 SEAFVPVPNLRYLDLSSNHLH---TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred hhhccCCCCCCEEECCCCcCC---cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 334445555555555544433 33332 2 444444444444444444 3344444444444444444443
No 101
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.82 E-value=2.5e-05 Score=86.42 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=56.8
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
..+++.+.+.... ...+.+..|.++++||+|+|+++.+. .+ |..+ .+.+|++|++++|.+..+ ++++.
T Consensus 55 l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 55 FSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQ---SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp CTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCC---CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred CccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCccc---ccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 3455555554433 22344556777777777777777554 44 5566 777777777777776665 66777
Q ss_pred CeeEEecCCCCcc--ccCCccccc
Q 037173 594 NLVSLKCLSAKLN--NFGMMFRYI 615 (617)
Q Consensus 594 ~L~~L~l~~t~i~--~Lp~~i~~L 615 (617)
+|++|+|++|++. .+|..+++|
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l 152 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNL 152 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTC
T ss_pred CCCEEeCCCCcccceechHhHhhc
Confidence 7777777777766 356655543
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.82 E-value=9e-06 Score=91.86 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=62.8
Q ss_pred ccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCccc
Q 037173 538 HMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 538 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~i~ 613 (617)
.++...|..+..|++|+|+++.+. .+|..+ .+.+|++|+|+++.|..+ +++|.+|++|+|++|+|+.+|.++.
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIF---NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp --------CCCCCCEEECTTSCCS---CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred ecChhhhccCCCCcEEECCCCCCC---CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 356778999999999999999776 899888 999999999999999988 8899999999999999999999887
Q ss_pred cc
Q 037173 614 YI 615 (617)
Q Consensus 614 ~L 615 (617)
.|
T Consensus 291 ~l 292 (727)
T 4b8c_D 291 SC 292 (727)
T ss_dssp GG
T ss_pred CC
Confidence 65
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.81 E-value=4.2e-05 Score=75.27 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=36.9
Q ss_pred ChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCccccCC
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
+...|.++++|++|+|+++.+. .+|.. + .+.+|++|+++++.+..+ +..+.+|++|+|++++|+.+|.
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CHhHcccccCCCEEECCCCccC---eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 3344555555555555555433 33333 2 555666666666665555 3355666666666666665554
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.80 E-value=1.6e-05 Score=70.57 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=68.4
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-c---ccccCC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-L---NIHAEN 594 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-L---i~~l~~ 594 (617)
.+.++.+.+...... ...+ +..+..+++|++|+++++.+. .+ ..+ .+.+|++|+++++.+.. + .+.+.+
T Consensus 16 ~~~l~~L~l~~n~l~-~~~~-~~~~~~l~~L~~L~l~~n~l~---~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSN-EGKL-EGLTDEFEELEFLSTINVGLT---SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCB-TTBC-CSCCTTCTTCCEEECTTSCCC---CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCC-hhHH-HHHHhhcCCCcEEECcCCCCC---Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 456777777655431 1123 347789999999999999776 44 666 89999999999999998 5 557999
Q ss_pred eeEEecCCCCccccC--Ccccc
Q 037173 595 LVSLKCLSAKLNNFG--MMFRY 614 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp--~~i~~ 614 (617)
|++|+|++|+++.+| ..++.
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGG
T ss_pred CCEEECCCCcCCChHHHHHHhh
Confidence 999999999999876 44443
No 105
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.79 E-value=8.4e-05 Score=74.51 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988876433333467899999999999999999864
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.77 E-value=2e-05 Score=72.08 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=56.1
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc-----ccccCC
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL-----NIHAEN 594 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L-----i~~l~~ 594 (617)
.++.+.+...... .+ ..|.++++|++|+|+++.+. .+|..+ .+.+|++|+++++.|+.+ +..+.+
T Consensus 43 ~L~~L~Ls~N~l~---~~--~~l~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 43 QFDAIDFSDNEIR---KL--DGFPLLRRLKTLLVNNNRIC---RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114 (176)
T ss_dssp CCSEEECCSSCCC---EE--CCCCCCSSCCEEECCSSCCC---EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTT
T ss_pred CCCEEECCCCCCC---cc--cccccCCCCCEEECCCCccc---ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCC
Confidence 4566655544432 12 45677778888888877665 666555 677888888888877765 456777
Q ss_pred eeEEecCCCCccccCCc
Q 037173 595 LVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~ 611 (617)
|++|+|+++.+..+|..
T Consensus 115 L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 115 LTYLCILRNPVTNKKHY 131 (176)
T ss_dssp CCEEECCSSGGGGSTTH
T ss_pred CCEEEecCCCCCCcHhH
Confidence 88888888877777764
No 107
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.74 E-value=3.6e-05 Score=80.10 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=36.1
Q ss_pred ChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc---c-cccCCeeEEecCCCCccccC
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL---N-IHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L---i-~~l~~L~~L~l~~t~i~~Lp 609 (617)
+...|..+++|++|+|+++.+. .+|.. + .+.+|++|+++++.++.+ + ..+.+|++|+|+++++..+|
T Consensus 85 ~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 85 DTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred ChhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 3345555555555555555443 33332 3 555666666666665555 2 35566666666666555553
No 108
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.74 E-value=6.3e-05 Score=73.97 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=64.7
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+.... ...++...|..+++|++|+|+++.+. .+|.. + .+.+|++|+++++.+..+ +..+.
T Consensus 108 l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 108 LVNLAELRLDRNQ---LKSLPPRVFDSLTKLTYLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp CSSCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ccCCCEEECCCCc---cCeeCHHHhCcCcCCCEEECCCCcCC---ccCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence 3456666665443 23455667888889999999888666 67766 4 788899999988888887 45788
Q ss_pred CeeEEecCCCCccccCCc
Q 037173 594 NLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~ 611 (617)
+|++|+|++++|+.+|.+
T Consensus 182 ~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TCCEEECCSSCCSCCCTT
T ss_pred CcCEEECCCCcCCcCCHH
Confidence 899999988888888764
No 109
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.74 E-value=5.4e-05 Score=68.88 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred CCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc---c-cccCCeeEEecCCCCccccCCc
Q 037173 547 MPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL---N-IHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 547 ~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L---i-~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
.+.|++|+|+++.+. .+ |..+ .+.+|++|+|+++.|..+ . ..+.+|++|+|++++|+.+|.+
T Consensus 29 ~~~l~~L~L~~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 29 PTTTQVLYLYDNQIT---KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcEEEcCCCcCC---ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence 388999999999776 66 4556 999999999999999999 3 5899999999999999999875
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.72 E-value=9e-05 Score=69.08 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred hcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCC-Cccc--ccccCCeeEEecCCCCccccC
Q 037173 544 FSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYP-LKTL--NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 544 ~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~-i~~L--i~~l~~L~~L~l~~t~i~~Lp 609 (617)
|.++++|++|+|+++.+.. ..|..+ .+.+|++|++++|. +..+ +..+.+|++|+|++|+|+.+|
T Consensus 108 l~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDD--SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CTTCTTCCEEECCSSBCBG--GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred hcCCCCCCEEEecCCccCc--HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence 4444455555554443321 123333 44455555555554 4444 445555555555555554443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.72 E-value=3.3e-05 Score=72.06 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=39.8
Q ss_pred hhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc--c--ccccCCeeEEecCCCC-ccccC
Q 037173 543 AFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT--L--NIHAENLVSLKCLSAK-LNNFG 609 (617)
Q Consensus 543 ~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~--L--i~~l~~L~~L~l~~t~-i~~Lp 609 (617)
.+..+++|++|+++++.+. ...|..+ .+.+|++|++++|.+.. . ++.+.+|++|+|++|+ +..+|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp GGTTCTTCCEEEEECTTCB--GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred hhhcCCCCCEEEeECCccC--cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 5566666666666666543 1245555 66666666666666665 2 5566666666666665 65554
No 112
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.72 E-value=4e-05 Score=84.67 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=72.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
+.++.+.+.... ...++...|.++++||+|+|+++.+. .+ |..+ .+.+||+|+|+++.+..+ ++.+.+
T Consensus 32 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCC---cCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 567777776554 33566778999999999999999766 66 5567 999999999999999888 779999
Q ss_pred eeEEecCCCCccccC-Cccccc
Q 037173 595 LVSLKCLSAKLNNFG-MMFRYI 615 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp-~~i~~L 615 (617)
|++|+|++|++..+| ..+++|
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTC
T ss_pred CCEEEccCCccccccccccCCC
Confidence 999999999999988 444443
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.71 E-value=5.5e-05 Score=69.15 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---c-cccC
Q 037173 519 GTEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---N-IHAE 593 (617)
Q Consensus 519 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i-~~l~ 593 (617)
....++.+.+...... .+ +......++|++|+|+++.+. .+ ..+ .+.+|++|+++++.|..+ + ..+.
T Consensus 17 ~~~~L~~L~l~~n~l~---~i-~~~~~~~~~L~~L~Ls~N~l~---~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP---VI-ENLGATLDQFDAIDFSDNEIR---KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCC---SC-CCGGGGTTCCSEEECCSSCCC---EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred CcCCceEEEeeCCCCc---hh-HHhhhcCCCCCEEECCCCCCC---cc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3566777777765543 22 223333449999999999776 55 567 899999999999999998 3 6899
Q ss_pred CeeEEecCCCCccccCC
Q 037173 594 NLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~ 610 (617)
+|++|+|++|+|..+|.
T Consensus 89 ~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 89 DLTELILTNNSLVELGD 105 (176)
T ss_dssp TCCEEECCSCCCCCGGG
T ss_pred CCCEEECCCCcCCcchh
Confidence 99999999999999887
No 114
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.71 E-value=3.5e-05 Score=75.71 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=83.7
Q ss_pred cCCCcccchhhHHHHHHHhhh----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 184 ENKGLVGVAWRIKEIESLLCI----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
....++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-. +. .......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~~- 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIEM- 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTTS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHHh-
Confidence 446799999988888876641 11122347899999999999999999976433311 11 1101000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCCCeEEEEeCCCCHH-----------------hHHHHHcccCCC---CC
Q 037173 254 RIKDLQKELLSKLLNDGNARNV-ESQLNRLARKKVLLVFDDVNHPG-----------------QIESLIGCLDEL---AS 312 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~-----------------~~~~l~~~l~~~---~~ 312 (617)
..+.... .+ ..+......++.+|+||+++... .+..++..+... ..
T Consensus 84 ------------~~~~~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 84 ------------FVGLGAS-RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------------CSSSCSS-SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------------hcchHHH-HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0011110 11 11112223567899999995321 122233333211 12
Q ss_pred CcEEEEEcCCccccc-c----cCcceEEEeccCChhHHHHHHHHhh
Q 037173 313 GSRVIITTRDKQVLE-N----CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 313 gs~IlvTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
...||.||....... . ......+.++..+.++-.+++....
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 345677776553221 1 1223567888888888888887665
No 115
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.70 E-value=6.6e-05 Score=73.94 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=53.7
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+..... ..++...|..+++|++|+|+++.+. .+|... .+.+|++|++++|.+..+ ++.+.+
T Consensus 109 ~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 109 TNLKELVLVENQL---QSLPDGVFDKLTNLTYLNLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcC---CccCHHHhccCCCCCEEECCCCccC---ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 4455555543332 2344555677777777777777554 555543 667777777777777766 346777
Q ss_pred eeEEecCCCCccccCCc
Q 037173 595 LVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~ 611 (617)
|++|+|++|++..+|.+
T Consensus 183 L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCEEECCSSCCSCCCTT
T ss_pred CCEEECCCCcCCccCHH
Confidence 77777777777776653
No 116
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=0.00011 Score=83.54 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred CCcccchhhHHHHHHHhhhcC-------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHH
Q 037173 186 KGLVGVAWRIKEIESLLCIRS-------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDL 258 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (617)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. +..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999999988888775321 12347899999999999999999998643323333333 33222211111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHc-CCCeEEEEeCCC--CHHhHHHHHcccCC-----------CCCCcEEEEEcCCcc
Q 037173 259 QKELLSKLLNDGNARNVESQLNRLA-RKKVLLVFDDVN--HPGQIESLIGCLDE-----------LASGSRVIITTRDKQ 324 (617)
Q Consensus 259 ~~~l~~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~--~~~~~~~l~~~l~~-----------~~~gs~IlvTTR~~~ 324 (617)
...+.+.++ ...-+|+||+++ ..+....+...+.. .....+||+||....
T Consensus 568 ----------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ----------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp -------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ----------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 011111222 234599999996 34444555444322 123568888887311
Q ss_pred -----------------cccccCcceEEEeccCChhHHHHHHHHhh
Q 037173 325 -----------------VLENCWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 325 -----------------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
.... ...++.+.+++.++..+++....
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 1112 23588999999998888876644
No 117
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.68 E-value=5.4e-05 Score=76.28 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=39.5
Q ss_pred hhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-c---ccccCCeeEEecCCCCcc-ccCCcccc
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-L---NIHAENLVSLKCLSAKLN-NFGMMFRY 614 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-L---i~~l~~L~~L~l~~t~i~-~Lp~~i~~ 614 (617)
..|.++++|++|+|+++.+. ..+|..+ .+.+|++|+++++.+.. + ++.+.+|++|+|+++++. .+|..+..
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCE--EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred hhHhcCCCCCEEECcCCeeC--CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 34555555555555555432 2445555 56666666666666552 2 556666666666666665 55554443
No 118
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.68 E-value=5.3e-05 Score=76.94 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=41.9
Q ss_pred cCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeEEecCCCC-ccccCCccc
Q 037173 545 SKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAK-LNNFGMMFR 613 (617)
Q Consensus 545 ~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~-i~~Lp~~i~ 613 (617)
.++++|++|+|+++.+. .+|..+ .+.+|++|+|+++.+..+ ++.+.+|++|+|++|+ ...+|..+.
T Consensus 180 ~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp EESTTCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred ccCCCCCEEECcCCCcC---cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 34666666666666544 666666 666777777777776666 5567777777777654 344555443
No 119
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.67 E-value=3.6e-05 Score=78.15 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCe
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENL 595 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L 595 (617)
...++.+.+...... .++. .+.++++|++|+|+++.+. .+|..+ .+.+|++|+|+++.+..+ ++++.+|
T Consensus 80 ~~~l~~L~L~~n~l~---~lp~-~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---QFPD-QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCS---SCCS-CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCCch---hcCh-hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 456778887765532 3443 4566999999999999776 899999 999999999999999988 8899999
Q ss_pred eEEecCCC-CccccCCcccc
Q 037173 596 VSLKCLSA-KLNNFGMMFRY 614 (617)
Q Consensus 596 ~~L~l~~t-~i~~Lp~~i~~ 614 (617)
++|+|++| .+..+|..+..
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS 172 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE
T ss_pred CEEECCCCCCccccChhHhh
Confidence 99999996 57778887643
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.67 E-value=4.6e-05 Score=84.41 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
.++++.+.+.... ...+++..|.++++|++|+|+++.+. .+|.. + .+.+|++|+|+++.++.+ +++|.
T Consensus 75 l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 75 FPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp CTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred CCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 4455666554433 22455566777777777777776554 55544 3 666677777776666666 45666
Q ss_pred CeeEEecCCCCccc
Q 037173 594 NLVSLKCLSAKLNN 607 (617)
Q Consensus 594 ~L~~L~l~~t~i~~ 607 (617)
+|++|+|++++++.
T Consensus 149 ~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 149 TLKELNVAHNLIQS 162 (635)
T ss_dssp TCCEEECCSSCCCC
T ss_pred ccCeeccccCcccc
Confidence 67777776666653
No 121
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.66 E-value=6.4e-05 Score=82.35 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=70.5
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc-ccccCCeeE
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL-NIHAENLVS 597 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L-i~~l~~L~~ 597 (617)
+.++.+.+..... ..+++..|.++++|++|+|+++.+. .+ |..+ .+.+|++|+|+++.++.+ ...+.+|++
T Consensus 52 ~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSI---SELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCC---CCCCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSE
T ss_pred CCcCEEECCCCCc---cccChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCccccccCCE
Confidence 5677777765543 3556678999999999999999766 55 5567 899999999999999999 558999999
Q ss_pred EecCCCCccccC--Cccccc
Q 037173 598 LKCLSAKLNNFG--MMFRYI 615 (617)
Q Consensus 598 L~l~~t~i~~Lp--~~i~~L 615 (617)
|+|++|++..+| ..+.+|
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGC
T ss_pred EECCCCCccccCchHhhccc
Confidence 999999998875 455443
No 122
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.66 E-value=4.6e-05 Score=82.55 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=63.2
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc-ccccCCeeE
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL-NIHAENLVS 597 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L-i~~l~~L~~ 597 (617)
++++.+.+..... ..+++..|.++++|++|+|+++.+. .+ |..+ .+.+|++|+|+++.|+.+ ...+.+|++
T Consensus 21 ~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYI---SELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCC---CCCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSE
T ss_pred ccccEEECCCCcc---cccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCccccCCccE
Confidence 4566666665442 3455567888888888888888655 44 5566 788888888888888888 447888888
Q ss_pred EecCCCCccc--cCCccccc
Q 037173 598 LKCLSAKLNN--FGMMFRYI 615 (617)
Q Consensus 598 L~l~~t~i~~--Lp~~i~~L 615 (617)
|+|++|+++. +|..+++|
T Consensus 95 L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGC
T ss_pred EeccCCccccccchhhhccC
Confidence 8888888876 45665543
No 123
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.66 E-value=9.2e-05 Score=72.89 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=33.0
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcc
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLN 606 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~ 606 (617)
++...|.++++|+.|+|+++.+. .+|... .+.+|++|+++++.+..+ +..+.+|++|+|+++.+.
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQ---SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHHHhccCccCCEEECCCCCcC---ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 33444555555555555555433 344332 455555555555555555 234555555555555443
No 124
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.65 E-value=6.3e-05 Score=82.35 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
.+.++.+.+.... ...+++..|.++++||+|+|+++.+. .+| ..+ .+.+|++|+++++.++.+ ++++.
T Consensus 51 l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 51 FPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp CSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcCC---ccCHhhhcCccccccccccccccccCCCccccccc
Confidence 3445555544332 22344455666666666666666544 444 344 666666666666666555 45666
Q ss_pred CeeEEecCCCCccc--cCCcccc
Q 037173 594 NLVSLKCLSAKLNN--FGMMFRY 614 (617)
Q Consensus 594 ~L~~L~l~~t~i~~--Lp~~i~~ 614 (617)
+|++|+|++|.++. +|.++.+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~ 147 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSN 147 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGG
T ss_pred cccEEecCCCccceecChhhhcc
Confidence 66666666666654 4555443
No 125
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.63 E-value=0.0012 Score=70.14 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=57.9
Q ss_pred eEEEEeCCC--CHHhHHHHHcccCCCCCCcEEE-EE---------cC----Cccccc-ccCcceEEEeccCChhHHHHHH
Q 037173 287 VLLVFDDVN--HPGQIESLIGCLDELASGSRVI-IT---------TR----DKQVLE-NCWVNQIYRMKELVDVDAHKLF 349 (617)
Q Consensus 287 ~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~Il-vT---------TR----~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf 349 (617)
-++++|+++ +.+..+.+...+...... .+| .| |. ...+.. .......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 389999996 556777777777654444 344 44 22 001100 1112245799999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHc-cCCchHHHHH
Q 037173 350 CQCAFRGGHLDASYTEVTRKAIKYA-HGVPLALQVL 384 (617)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLai~~~ 384 (617)
...+-... ..-..+.+..|++.+ .|.|.....+
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87762111 112345677888888 8888755443
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.63 E-value=6.1e-05 Score=68.86 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=68.7
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+..... ..++...|..+++|++|+|+++.+. .+|... .+.+|++|+++++.+..+ ...+.
T Consensus 51 l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 51 LTQLTKLSLSQNQI---QSLPDGVFDKLTKLTILYLHENKLQ---SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124 (177)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cccccEEECCCCcc---eEeChhHccCCCccCEEECCCCCcc---ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc
Confidence 46677777765543 3566778899999999999999776 777764 889999999999999998 35799
Q ss_pred CeeEEecCCCCccccCC
Q 037173 594 NLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~ 610 (617)
+|++|+|+++.+.--+.
T Consensus 125 ~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 125 SLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred ccCEEEecCCCeeccCc
Confidence 99999999998765443
No 127
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.62 E-value=8.9e-05 Score=73.05 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=28.7
Q ss_pred hhcCCCCceEEEEecccCccccccCC-CC-CCCCceEEEecCCCCcc--c---ccccCCeeEEecCCCCccccC
Q 037173 543 AFSKMPKLRFLKFYGFENKCMVSHLD-GV-LFAELRHLEWQQYPLKT--L---NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 543 ~~~~~~~LrvL~l~~~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~--L---i~~l~~L~~L~l~~t~i~~Lp 609 (617)
.|.++++|+.|++.++.+. .++. .+ .+.+|++|+++++.+.. + ++.+.+|++|+|++++++.+|
T Consensus 95 ~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTTTCTTCCEEECTTSCCC---CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred hhcCCccccEEECCCCCcc---ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 3444444444444444332 2222 23 44455555555555443 1 334455555555555554443
No 128
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.61 E-value=6.3e-05 Score=75.78 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=31.1
Q ss_pred hhcCCCCceEEEEec-ccCccccccCCCC-CCCCceEEEecCCCCc-cc---ccccCCeeEEecCCCCcc-ccCCcc
Q 037173 543 AFSKMPKLRFLKFYG-FENKCMVSHLDGV-LFAELRHLEWQQYPLK-TL---NIHAENLVSLKCLSAKLN-NFGMMF 612 (617)
Q Consensus 543 ~~~~~~~LrvL~l~~-~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~-~L---i~~l~~L~~L~l~~t~i~-~Lp~~i 612 (617)
.|.++++|++|+|++ +.+. ..+|..+ .+.+|++|+|+++.+. .+ ++++.+|++|+|+++++. .+|..+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred hHhCCCCCCeeeCCCCCccc--ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 444555555555543 2211 1344444 4555555555555544 22 444555555555555444 344433
No 129
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.61 E-value=8e-05 Score=76.31 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=61.9
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
+.++.+.+..... ..++...|.++++|+.|+|+++.+. .++ ..+ .+.+|++|+++++.++.+ +..+.+
T Consensus 52 ~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 3566776654442 3455567888888888888888655 554 446 788888888888888887 457888
Q ss_pred eeEEecCCCCccccCC
Q 037173 595 LVSLKCLSAKLNNFGM 610 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~ 610 (617)
|++|+|++++++.+|.
T Consensus 126 L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGE 141 (353)
T ss_dssp CSEEECTTCCCSSSCS
T ss_pred CCEEECCCCCCcccCc
Confidence 8888888888888876
No 130
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.61 E-value=9.6e-05 Score=74.55 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=62.3
Q ss_pred CceEEEEeeccccccccccCh-hhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc---ccccCCee
Q 037173 521 EAIKGISLDMNKVNRKIHMDS-FAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL---NIHAENLV 596 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L---i~~l~~L~ 596 (617)
..++.+.+...... .+.. ..+..+++|++|+|+++.+. .+|....+.+|++|+|+++.+..+ ++.+.+|+
T Consensus 144 ~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 217 (317)
T 3o53_A 144 SRVQYLDLKLNEID---TVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (317)
T ss_dssp SSEEEEECTTSCCC---EEEGGGGGGGTTTCCEEECTTSCCC---EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred CCCCEEECCCCCCC---cccHHHHhhccCcCCEEECCCCcCc---ccccccccccCCEEECCCCcCCcchhhhcccCccc
Confidence 45666665544321 2222 33457888888888888665 555544677888888888888888 66888889
Q ss_pred EEecCCCCccccCCcccc
Q 037173 597 SLKCLSAKLNNFGMMFRY 614 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~~i~~ 614 (617)
+|+|++++|+.+|..+..
T Consensus 218 ~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 218 WISLRNNKLVLIEKALRF 235 (317)
T ss_dssp EEECTTSCCCEECTTCCC
T ss_pred EEECcCCcccchhhHhhc
Confidence 999988888888876654
No 131
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.60 E-value=6.6e-05 Score=82.90 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=39.5
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc---c-cccCCeeEEecCCCCccccCC
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL---N-IHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L---i-~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
+++..|..+++|++|+|+++.+. .+|.. + .+.+|++|+|++|.+..+ + +.+.+|++|+|++|++..+|.
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CChHHhcCCCCCCEEECCCCcCC---CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 33445566666666666665444 44433 3 566666666666666665 2 456666666666666655543
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.60 E-value=7.2e-05 Score=76.44 Aligned_cols=65 Identities=15% Similarity=0.046 Sum_probs=33.8
Q ss_pred hcCCCCceEEEEec-ccCccccccCC-CC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCccccCCc
Q 037173 544 FSKMPKLRFLKFYG-FENKCMVSHLD-GV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 544 ~~~~~~LrvL~l~~-~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
+..+++|+.|+|++ +.+. .+|. .+ .|.+|++|+|+++.|..+ +.+|.+|++|+|++++|..+|.+
T Consensus 27 l~~~~~L~~L~l~~~n~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ---HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC---EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCCCCeeEEEccCCCCCC---CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 45555555555553 4433 4442 23 555555555555555555 23555555555555555555543
No 133
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.59 E-value=8.7e-05 Score=81.21 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=69.7
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCC-CC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLD-GV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+.... ...+....|.++++|++|+|+++.+. .++. .+ .+.+||+|+|+++.+..+ ++.+.+
T Consensus 28 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCC---CCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCc---cCccChhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 457777666544 23456678999999999999999766 6654 46 899999999999999888 679999
Q ss_pred eeEEecCCCCccccCC
Q 037173 595 LVSLKCLSAKLNNFGM 610 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~ 610 (617)
|++|+|++++++.+|.
T Consensus 102 L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 102 LQKLVAVETNLASLEN 117 (570)
T ss_dssp CCEEECTTSCCCCSTT
T ss_pred cccccccccccccCCC
Confidence 9999999999999886
No 134
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.58 E-value=6.4e-05 Score=62.32 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=54.4
Q ss_pred CcccEEEcCccccCCCchHHHHHHHHhhCCCceeecCCcCCCCcchHHHHHHHHhcceEEEEecCCccCChhhHHHHHHH
Q 037173 14 KLHDVFLSFRGEDTRDNFTSHLHYVLSLKGIKTFVDDQLIRGDNISRSLLDTIEASSISIIIFSERYASSRWCLDELLKI 93 (617)
Q Consensus 14 ~~~dvFisy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 93 (617)
.+|.+||||+++| . .+.|...|...|+... | +.|+.|+++|++.++...+|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4699999999998 2 5556666654555332 2 678899999999999999999999999776
Q ss_pred HHHhhhCCCEEEEEE
Q 037173 94 LECKHDYGQIVIPVF 108 (617)
Q Consensus 94 ~~~~~~~~~~vipi~ 108 (617)
.+ .+.+++-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 64 445566664
No 135
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.58 E-value=0.00014 Score=72.02 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=37.5
Q ss_pred ChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcccc
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
.+..|.++++|++|+|+++.+. .+|.. + .+.+|++|+++++.+..+ +..+.+|++|+|+++++..+
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQ---ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CHhHhhCCcCCCEEECCCCccc---ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 3445555666666666655444 44443 3 556666666666666555 33556666666666665554
No 136
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.58 E-value=8.9e-05 Score=71.34 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=32.5
Q ss_pred ChhhhcCCCCceEEEEec-ccCccccccCCC-C-CCCCceEEEecCCCCccc--ccccCCee---EEecCCC-CccccCC
Q 037173 540 DSFAFSKMPKLRFLKFYG-FENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL--NIHAENLV---SLKCLSA-KLNNFGM 610 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~-~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~---~L~l~~t-~i~~Lp~ 610 (617)
+...|.++++|++|+|++ +.+. .+|.. + .+.+|++|+++++.++.+ .+.+.+|+ +|+|+++ +++.+|.
T Consensus 72 ~~~~f~~l~~L~~L~l~~~n~l~---~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 72 ESHSFYNLSKVTHIEIRNTRNLT---YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp CTTTEESCTTCCEEEEEEETTCC---EECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred CHhHcCCCcCCcEEECCCCCCee---EcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCc
Confidence 333455555555555554 4333 34432 2 455555555555555544 33333333 5555555 5555544
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.57 E-value=0.00012 Score=67.92 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=66.4
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+..... ..+.+..|.++++|++|+|+++.+. .+|.. + .+.+|++|+|+++.|..+ +..+.
T Consensus 53 l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 53 LPHLVKLELKRNQL---TGIEPNAFEGASHIQELQLGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSCCCC---EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred CCCCCEEECCCCCC---CCcCHhHcCCcccCCEEECCCCcCC---ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 45677777765543 3456778999999999999999776 66655 5 899999999999999988 66899
Q ss_pred CeeEEecCCCCcc
Q 037173 594 NLVSLKCLSAKLN 606 (617)
Q Consensus 594 ~L~~L~l~~t~i~ 606 (617)
+|++|+|+++.+.
T Consensus 127 ~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 127 SLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEeCCCCcc
Confidence 9999999998765
No 138
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.57 E-value=0.00013 Score=72.63 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
.+.++.+.+...... .+ +..+..+++|++|+|+++.+. .+|.. + .+.+|++|+|+++.+..+ ...+.
T Consensus 76 l~~L~~L~Ls~N~l~---~l-~~~~~~l~~L~~L~l~~N~l~---~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ---SL-PLLGQTLPALTVLDVSFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp CTTCCEEECCSSCCS---SC-CCCTTTCTTCCEEECCSSCCC---CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCcCCEEECCCCcCC---cC-chhhccCCCCCEEECCCCcCc---ccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 345566655544322 22 345678889999999888766 67654 5 888999999999998888 34788
Q ss_pred CeeEEecCCCCccccCCcc
Q 037173 594 NLVSLKCLSAKLNNFGMMF 612 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~i 612 (617)
+|++|+|++++|+.+|.++
T Consensus 149 ~L~~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGL 167 (290)
T ss_dssp TCCEEECTTSCCSCCCTTT
T ss_pred CCCEEECCCCcCCccCHHH
Confidence 9999999999999888754
No 139
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.57 E-value=0.0011 Score=64.44 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=89.5
Q ss_pred ccCCCcccchhhHHHHHHHhhh--cC--------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI--RS--------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
...++++|.+....++.++... .. .-.+-+.|+|++|+||||||+.++.... ...+.+. .......
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~-~~~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITAS-GSDFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEE-HHHHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEee-HHHHHHH
Confidence 3445688888777766654421 00 0112389999999999999999998754 2223333 1111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHc-CCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CCC
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRLA-RKKVLLVFDDVNHP----------------GQIESLIGCLDEL--ASG 313 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~g 313 (617)
.. ..... .+..+.+... ..+.++++|+++.. .....+...+... ...
T Consensus 89 ~~-~~~~~-------------~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 89 FV-GVGAA-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp CT-THHHH-------------HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred Hh-hHHHH-------------HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 00 00000 0122222322 35689999999421 1122333333211 122
Q ss_pred cEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 314 SRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 314 s~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
..++.||..+..... ......+.++..+.++-.+++....-+.....+ .....+++.+.|+-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 345556666544321 124567889888888888888765522111111 11345666666653
No 140
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.55 E-value=0.00015 Score=71.76 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=65.8
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+..... ..++...|.++++|+.|+|+++.+. .+|.. + .+.+|++|+++++.+..+ +..+.
T Consensus 128 l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 128 LAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp CTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCCccc---ccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 45566666654432 3455667888999999999988766 67765 5 788999999999998877 66888
Q ss_pred CeeEEecCCCCccccCC
Q 037173 594 NLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~ 610 (617)
+|++|+|+++++..+|.
T Consensus 202 ~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPT 218 (285)
T ss_dssp TCCEEECCSSCCSCCCH
T ss_pred cccEeeCCCCcCCcCCH
Confidence 99999999999888874
No 141
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.55 E-value=0.00019 Score=72.01 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=35.7
Q ss_pred hhHHHHHHHhhhcCC-CeEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEE
Q 037173 193 WRIKEIESLLCIRSA-GVYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFAL 244 (617)
Q Consensus 193 ~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 244 (617)
..++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455566653222 246788999999999999999999876 5544455555
No 142
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.54 E-value=0.00013 Score=71.96 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
.+.++.+.+.... ...++...|.++++|++|+|+++.+. .++ ..+ .+.+|++|+++++.+..+ ++.+.
T Consensus 51 l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 51 FPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp CTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred ccCCcEEECCCCc---CCccCHHHccCCcCCCEEECCCCccC---ccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence 3455555554433 22445566777888888888877655 454 445 778888888888887777 56788
Q ss_pred CeeEEecCCCCccc--cCCcccc
Q 037173 594 NLVSLKCLSAKLNN--FGMMFRY 614 (617)
Q Consensus 594 ~L~~L~l~~t~i~~--Lp~~i~~ 614 (617)
+|++|+|+++++.. +|..+..
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGG
T ss_pred CCCEEECcCCccceecCchhhcc
Confidence 88888888888876 5665544
No 143
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.53 E-value=0.00012 Score=75.29 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=66.5
Q ss_pred ceEEEEeeccccccccccChhhhc-CCCCceEEEEecccCccccccCC-CC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFS-KMPKLRFLKFYGFENKCMVSHLD-GV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~-~~~~LrvL~l~~~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
.++.+.+.... ...++...|. ++++|+.|+|+++.+. .+|. .+ .+.+|++|+|+++.|+.+ +..+.+
T Consensus 40 ~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 40 YTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp TCSEEECCSSC---CCEECTTSSSSCCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCEEECCCCC---CCccChhhhhhcccccCEEECCCCcCC---ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 35566555443 3345666777 9999999999999776 6765 46 899999999999999998 568999
Q ss_pred eeEEecCCCCccccC
Q 037173 595 LVSLKCLSAKLNNFG 609 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp 609 (617)
|++|+|++++|..++
T Consensus 114 L~~L~L~~N~i~~~~ 128 (361)
T 2xot_A 114 LEVLLLYNNHIVVVD 128 (361)
T ss_dssp CCEEECCSSCCCEEC
T ss_pred CCEEECCCCcccEEC
Confidence 999999999999884
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.53 E-value=0.00016 Score=67.25 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=65.9
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCC-CC-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLD-GV-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+.... ...++...|..+++|+.|+|+++.+. .+|. .+ .+.+|++|+|+++.|..+ +..+.
T Consensus 53 l~~L~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~l~---~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 53 YKHLTLIDLSNNR---ISTLSNQSFSNMTQLLTLILSYNRLR---CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp CTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCC---BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred ccCCCEEECCCCc---CCEeCHhHccCCCCCCEEECCCCccC---EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 4567777776554 33566778999999999999999776 6665 45 899999999999999998 45799
Q ss_pred CeeEEecCCCCcc
Q 037173 594 NLVSLKCLSAKLN 606 (617)
Q Consensus 594 ~L~~L~l~~t~i~ 606 (617)
+|++|+|.++.+.
T Consensus 127 ~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 127 ALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCEE
T ss_pred cccEEEeCCCCee
Confidence 9999999988653
No 145
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.53 E-value=9.4e-05 Score=74.30 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=53.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
.++++.+.+...... .++. +.++++|++|+|+++.+. .+| .+ .+.+|++|++++|.+..+ +..+.+|+
T Consensus 62 l~~L~~L~L~~n~i~---~~~~--~~~l~~L~~L~L~~n~l~---~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 132 (308)
T 1h6u_A 62 LNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLK---NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132 (308)
T ss_dssp CTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCS---CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred cCCCCEEEccCCcCC---CChh--HccCCCCCEEEccCCcCC---Cch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCC
Confidence 345566655544322 2222 677777777777777655 443 35 677778888877777777 66777888
Q ss_pred EEecCCCCccccCC
Q 037173 597 SLKCLSAKLNNFGM 610 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~ 610 (617)
+|+|++|++..+|.
T Consensus 133 ~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 133 VLYLDLNQITNISP 146 (308)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEECCCCccCcCcc
Confidence 88887777776653
No 146
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.50 E-value=0.00051 Score=77.11 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=97.8
Q ss_pred CCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhh-hccC
Q 037173 186 KGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREA-EETG 253 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 253 (617)
+++.|.++.+++|.+.+.. +-..++-|.++|++|+|||+||+.+++..... ++..+.... +...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4578999999988886631 11235779999999999999999999875432 232222111 1111
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-------------HhHHHHHcccCCC--CCCcEEE
Q 037173 254 R-IKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-------------GQIESLIGCLDEL--ASGSRVI 317 (617)
Q Consensus 254 ~-~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~Il 317 (617)
+ ....++.++. ......+.+|+||+++.. .....++..+... ..+..||
T Consensus 280 gese~~lr~lF~---------------~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 280 GESESNLRKAFE---------------EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp THHHHHHHHHHH---------------HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred hHHHHHHHHHHH---------------HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 1111222211 122467899999999531 1123333332211 2344556
Q ss_pred EEcCCccccc-cc----CcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCch
Q 037173 318 ITTRDKQVLE-NC----WVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVPL 379 (617)
Q Consensus 318 vTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 379 (617)
.||....... .. .....+++...+.++-.++|..+.-...... ......|++++.|.--
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVG 408 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCH
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCH
Confidence 6665543222 11 3456789999999998899887663221111 1114567788887753
No 147
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.50 E-value=0.00016 Score=75.09 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcccc
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
+++..|.++++|++|+|+++.+. .+|..+ .+.+|++|+++++.+..+ +..+.+|++|+|++++++.+
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCHHHhcCCCCCCEEECCCCccC---cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 34445555666666666655444 555543 555666666666655555 34555666666666555544
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.50 E-value=0.00012 Score=80.03 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=72.0
Q ss_pred eEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeEEe
Q 037173 523 IKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVSLK 599 (617)
Q Consensus 523 ~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~ 599 (617)
++.+.+...... .++. |..+++|+.|+|+++.+. .+|..+ .+.+|++|+|+++.|+.+ ++.|.+|++|+
T Consensus 443 L~~L~Ls~n~l~---~lp~--~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~ 514 (567)
T 1dce_A 443 VRVLHLAHKDLT---VLCH--LEQLLLVTHLDLSHNRLR---ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELL 514 (567)
T ss_dssp CSEEECTTSCCS---SCCC--GGGGTTCCEEECCSSCCC---CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEE
T ss_pred ceEEEecCCCCC---CCcC--ccccccCcEeecCccccc---ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEE
Confidence 556666554432 3443 899999999999999777 899999 999999999999999999 88999999999
Q ss_pred cCCCCcccc--CCccccc
Q 037173 600 CLSAKLNNF--GMMFRYI 615 (617)
Q Consensus 600 l~~t~i~~L--p~~i~~L 615 (617)
|++|+|+.+ |..+..|
T Consensus 515 Ls~N~l~~~~~p~~l~~l 532 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSC 532 (567)
T ss_dssp CCSSCCCSSSTTGGGGGC
T ss_pred CCCCCCCCCCCcHHHhcC
Confidence 999999999 8877665
No 149
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.48 E-value=0.00014 Score=77.20 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=35.9
Q ss_pred cChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCccccCC
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
+....|.++++|++|+|+++.+. .++ ..+ .+.+|++|+|+++.+..+ +..+.+|++|+|++++|+.+|.
T Consensus 90 ~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 90 IQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred ECHHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence 33445555555555555555443 333 333 555555555555555555 3345555555555555555543
No 150
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.48 E-value=0.00015 Score=77.49 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=30.1
Q ss_pred hhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcccc
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
...|.++++|++|+|+++.+. .+ |..+ .+.+|++|+|+++.++.+ +..+.+|++|+|+++++..+
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred HhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 344455555555555544333 22 3333 444555555555544444 23444555555544444443
No 151
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.46 E-value=0.0025 Score=62.69 Aligned_cols=176 Identities=13% Similarity=0.061 Sum_probs=91.6
Q ss_pred cccCCCcccchhhHHHHHHHhhhc-C---------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhc
Q 037173 182 QSENKGLVGVAWRIKEIESLLCIR-S---------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEE 251 (617)
Q Consensus 182 ~~~~~~~vGR~~~~~~l~~~L~~~-~---------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (617)
....++++|.+...+++.+....- . .-.+-+.|+|++|+||||||+.++.... ...+.+. ......
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~-~~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITAS-GSDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEE-HHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEec-HHHHHH
Confidence 344567899988877776654310 0 0112389999999999999999998764 2223333 111110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH----------------HhHHHHHcccCCCC--C
Q 037173 252 TGRIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP----------------GQIESLIGCLDELA--S 312 (617)
Q Consensus 252 ~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~ 312 (617)
... ..... .+..+.+.. ...+.++++|+++.. ..+..+...+.... .
T Consensus 112 ~~~-~~~~~-------------~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 112 MFV-GVGAA-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp STT-THHHH-------------HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred HHh-hHHHH-------------HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 000 00000 012222222 245789999999421 11223333332211 2
Q ss_pred CcEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 313 GSRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 313 gs~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
...++.||..+..... ......+.++..+.++-.+++...+-......+ .....++..+.|+.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 2344556665544321 124467888888888888888766522111111 11345666676654
No 152
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.46 E-value=0.00014 Score=74.10 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=30.3
Q ss_pred hcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeEEecCCC
Q 037173 544 FSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVSLKCLSA 603 (617)
Q Consensus 544 ~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~l~~t 603 (617)
|.++++|++|+++++.+. .+| .+ .+.+|++|+++++.+..+ +..+.+|++|++++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~---~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKIT---DIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECCSSCCC---CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEccCCccc---Cch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCC
Confidence 555555555555555443 332 24 555555555555555555 455555555555555
No 153
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.46 E-value=0.00014 Score=80.34 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=50.6
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc----ccccCCe
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL----NIHAENL 595 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L 595 (617)
.+++.+.+.... ...+.+..|.++++|++|+|+++.+. ...|..+ .+.+|++|+++++.+..+ ++++.+|
T Consensus 57 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 57 INLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCS--EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred ccceEEECCCCc---cceeChhhccCccccCeeeCCCCccc--ccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 344455444332 22344556667777777777666544 1224455 677777777777777665 5677777
Q ss_pred eEEecCCCCcccc
Q 037173 596 VSLKCLSAKLNNF 608 (617)
Q Consensus 596 ~~L~l~~t~i~~L 608 (617)
++|+|+++++..+
T Consensus 132 ~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 132 ESLYLGSNHISSI 144 (606)
T ss_dssp CEEECCSSCCCCC
T ss_pred cEEECCCCccccc
Confidence 7777777777665
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.46 E-value=0.00012 Score=64.91 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=27.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...++|+|+.|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 458899999999999999999998654311255554
No 155
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.46 E-value=0.00019 Score=76.17 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=53.3
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc------ccc
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL------NIH 591 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L------i~~ 591 (617)
..+++.+.+..... ...++...|.++++|++|+|+++.+. .+ |..+ .+.+|++|++++|.+... +..
T Consensus 53 l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 53 LQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp CTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCTTC---EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred CccccEEECcCCcc--cceECcccccccccCCEEeCCCCccC---ccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 34455555443322 12344566777777777777777554 33 5566 777777777777777652 446
Q ss_pred cCCeeEEecCCCCcccc
Q 037173 592 AENLVSLKCLSAKLNNF 608 (617)
Q Consensus 592 l~~L~~L~l~~t~i~~L 608 (617)
+.+|++|+|+++++..+
T Consensus 128 l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp CTTCCEEECCSSBCCSC
T ss_pred cccCCEEECCCCccCcc
Confidence 77777777777777766
No 156
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.45 E-value=0.00015 Score=78.87 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=53.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
+.++.+.+..... ..+.+..|.++++|++|+|+++.+. .+| ..+ .+.+|++|+|+++.+..+ ++.+.+
T Consensus 26 ~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCC---CEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCcc---CccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 4566666554432 2334456777777777777777654 444 445 777777777777777766 557777
Q ss_pred eeEEecCCCCcccc
Q 037173 595 LVSLKCLSAKLNNF 608 (617)
Q Consensus 595 L~~L~l~~t~i~~L 608 (617)
|++|+|++|+++.+
T Consensus 100 L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 100 LKYLNLMGNPYQTL 113 (549)
T ss_dssp CCEEECTTCCCSSS
T ss_pred CcEEECCCCccccc
Confidence 77777777777643
No 157
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.45 E-value=7.6e-05 Score=74.74 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=39.5
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCCeeE
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAENLVS 597 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~~ 597 (617)
.++.+.+..... ..++...|.++++|++|+|+++.+......|..+ .+.+|++|+++++.+..+ +..+.+|++
T Consensus 29 ~l~~L~L~~n~l---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 29 SATRLELESNKL---QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCEEECCCCcc---CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 444444443322 2344445555666666666555443211223333 444555555555554444 334455555
Q ss_pred EecCCCCccccC
Q 037173 598 LKCLSAKLNNFG 609 (617)
Q Consensus 598 L~l~~t~i~~Lp 609 (617)
|+|++++++.+|
T Consensus 106 L~l~~n~l~~~~ 117 (306)
T 2z66_A 106 LDFQHSNLKQMS 117 (306)
T ss_dssp EECTTSEEESST
T ss_pred EECCCCcccccc
Confidence 555555444443
No 158
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.45 E-value=0.00019 Score=79.25 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+.... ...+++..|.++++|++|+|+++.+. .+|..+ .+.+|++|+|+++.+..+ ++.+.
T Consensus 98 l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 98 AHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp CTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCCEEECCCCc---CCCCCHHHHcCCCCCCEEEeeCCCCC---CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 3445555554333 22345556677777777777777555 666654 667777777777776666 45677
Q ss_pred CeeEEecCCCCccccC
Q 037173 594 NLVSLKCLSAKLNNFG 609 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp 609 (617)
+|++|+|++|++..+|
T Consensus 172 ~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TCCEEECTTSCCSBCC
T ss_pred cCcEEECcCCCCCCcC
Confidence 7777777777766654
No 159
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.44 E-value=0.00019 Score=77.14 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc---ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL---NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L---i~~l~~L~ 596 (617)
.+.++.+.+...... ...+..++..+++|++|+|+++.+. .+|....+.+|++|+|+++.+..+ ++.+.+|+
T Consensus 143 l~~L~~L~Ls~N~l~--~~~~~~l~~~l~~L~~L~Ls~N~l~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 143 RSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (487)
T ss_dssp GSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSCCC---EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred CCCCCEEECCCCCCC--CcChHHHhhhCCcccEEecCCCccc---cccccccCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence 345666665544331 1122333347888888888888765 555544778899999999888888 66888899
Q ss_pred EEecCCCCccccCCcccc
Q 037173 597 SLKCLSAKLNNFGMMFRY 614 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~~i~~ 614 (617)
+|+|++|+|..+|..+..
T Consensus 218 ~L~Ls~N~l~~lp~~l~~ 235 (487)
T 3oja_A 218 WISLRNNKLVLIEKALRF 235 (487)
T ss_dssp EEECTTSCCCEECTTCCC
T ss_pred EEEecCCcCcccchhhcc
Confidence 999999988888877654
No 160
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.43 E-value=0.00021 Score=71.15 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=54.7
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
..+++.+.+...... . ...+..+++|+.|+|+++.+. .+ ..+ .+.+|++|+++++.+..+ ++.+.+|+
T Consensus 89 l~~L~~L~l~~n~l~---~--~~~l~~l~~L~~L~L~~n~i~---~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 159 (291)
T 1h6t_A 89 LKNLGWLFLDENKVK---D--LSSLKDLKKLKSLSLEHNGIS---DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159 (291)
T ss_dssp CTTCCEEECCSSCCC---C--GGGGTTCTTCCEEECTTSCCC---CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CCCCCEEECCCCcCC---C--ChhhccCCCCCEEECCCCcCC---CC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCC
Confidence 345556655544322 1 123677777777777777655 33 245 777788888888887777 77788888
Q ss_pred EEecCCCCccccCC
Q 037173 597 SLKCLSAKLNNFGM 610 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~ 610 (617)
+|+|++|+|..+|.
T Consensus 160 ~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 160 TLSLEDNQISDIVP 173 (291)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEEccCCccccchh
Confidence 88888887777654
No 161
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.43 E-value=0.00021 Score=71.78 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=66.1
Q ss_pred CCCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCe
Q 037173 519 GTEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENL 595 (617)
Q Consensus 519 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L 595 (617)
...+++.+.+...... .+ ..+.++++|+.|+|+++.+. .+|. + .+.+|++|+++++.+..+ ++.+.+|
T Consensus 83 ~l~~L~~L~L~~n~l~---~~--~~~~~l~~L~~L~l~~n~l~---~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 153 (308)
T 1h6u_A 83 NLTKITELELSGNPLK---NV--SAIAGLQSIKTLDLTSTQIT---DVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNL 153 (308)
T ss_dssp TCCSCCEEECCSCCCS---CC--GGGTTCTTCCEEECTTSCCC---CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred cCCCCCEEEccCCcCC---Cc--hhhcCCCCCCEEECCCCCCC---Cchh-hcCCCCCCEEECCCCccCcCccccCCCCc
Confidence 3566777777755443 12 36889999999999998766 5554 6 888999999999999988 7899999
Q ss_pred eEEecCCCCccccCC
Q 037173 596 VSLKCLSAKLNNFGM 610 (617)
Q Consensus 596 ~~L~l~~t~i~~Lp~ 610 (617)
++|+|++|+++.+|.
T Consensus 154 ~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 154 QYLSIGNAQVSDLTP 168 (308)
T ss_dssp CEEECCSSCCCCCGG
T ss_pred cEEEccCCcCCCChh
Confidence 999999999888774
No 162
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.42 E-value=0.00027 Score=69.18 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=20.7
Q ss_pred CCCCceEEEecCCCCccc--ccccCCeeEEecCCCCcccc
Q 037173 571 LFAELRHLEWQQYPLKTL--NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 571 ~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~l~~t~i~~L 608 (617)
.+.+|++|+++++.++.+ ++.+.+|++|+|++|+|..+
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred CcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch
Confidence 455555555555555555 44555555555555555544
No 163
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.42 E-value=0.00018 Score=82.87 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=35.3
Q ss_pred ChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCcc--c----ccccCCeeEEecCCCCcccc
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKT--L----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~--L----i~~l~~L~~L~l~~t~i~~L 608 (617)
++..|.++++||+|+|+++.+. .+ |..+ .+.+|++|+|++|.+.. + +++|.+|++|||++|++..+
T Consensus 65 ~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 65 DKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp CTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 3445555555555555555443 22 4444 55556666666555543 1 34555666666666555544
No 164
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.38 E-value=0.00021 Score=71.17 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=59.0
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
.+.++.+.+...... .++. +.++++|+.|+|+++.+. .+|. + .+.+|++|++++|.+..+ +..+.+|+
T Consensus 67 l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~---~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVK---DLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCC---CGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCC
T ss_pred CCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCC---CChh-hccCCCCCEEECCCCcCCCChhhcCCCCCC
Confidence 355666666554432 2222 788888888888888665 4443 6 788888888888888888 77888888
Q ss_pred EEecCCCCccccC
Q 037173 597 SLKCLSAKLNNFG 609 (617)
Q Consensus 597 ~L~l~~t~i~~Lp 609 (617)
+|+|++|+++.++
T Consensus 138 ~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 138 SLYLGNNKITDIT 150 (291)
T ss_dssp EEECCSSCCCCCG
T ss_pred EEEccCCcCCcch
Confidence 8888888887763
No 165
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.38 E-value=0.00032 Score=67.35 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred CceEEEEeec-cccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCce---EEEecCC-CCccc----cc
Q 037173 521 EAIKGISLDM-NKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELR---HLEWQQY-PLKTL----NI 590 (617)
Q Consensus 521 ~~~~~l~l~~-~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr---~L~l~~~-~i~~L----i~ 590 (617)
++++.+.+.. .. ...++...|..+++|+.|+++++.+. .+|. + .+.+|+ +|+++++ .++.+ ..
T Consensus 80 ~~L~~L~l~~~n~---l~~i~~~~f~~l~~L~~L~l~~n~l~---~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 80 SKVTHIEIRNTRN---LTYIDPDALKELPLLKFLGIFNTGLK---MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp TTCCEEEEEEETT---CCEECTTSEECCTTCCEEEEEEECCC---SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred cCCcEEECCCCCC---eeEcCHHHhCCCCCCCEEeCCCCCCc---cccc-cccccccccccEEECCCCcchhhcCccccc
Confidence 4455555543 22 22344556667777777777766544 4444 3 333333 6666555 55555 33
Q ss_pred ccCCee-EEecCCCCccccCCc
Q 037173 591 HAENLV-SLKCLSAKLNNFGMM 611 (617)
Q Consensus 591 ~l~~L~-~L~l~~t~i~~Lp~~ 611 (617)
.+.+|+ +|+|++++++.+|..
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTT
T ss_pred chhcceeEEEcCCCCCcccCHh
Confidence 455555 555555555555543
No 166
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.37 E-value=0.00025 Score=71.93 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=32.8
Q ss_pred ChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc-ccccCCeeEEecCCCCccccCC
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL-NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L-i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
++..|.++++|++|+|+++.+. .+ |..+ .+.+|++|+++++.+..+ ..-..+|++|+|++++|..+|.
T Consensus 70 ~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 70 RKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCS
T ss_pred CHhHhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCH
Confidence 3344555555555555555433 33 3334 555555555555555554 1112455555555555444443
No 167
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.37 E-value=0.0002 Score=75.79 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=39.0
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCCeeEEecCCC-CccccCC
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSA-KLNNFGM 610 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t-~i~~Lp~ 610 (617)
++...|.++++|+.|+|+++.+. .+|.. + .+.+|++|+|+++.|..+ +..+.+|++|+|+++ .+..+|.
T Consensus 103 i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDNRLT---TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSSCCS---SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred cChhhccCCccCCEEECCCCcCC---eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 34455566666666666665444 45543 3 566666666666666655 345666666666553 4554443
No 168
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.37 E-value=0.00028 Score=71.45 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=53.1
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCC-CC-CCCCceEEEecCCCCccc---ccccCCee
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLD-GV-LFAELRHLEWQQYPLKTL---NIHAENLV 596 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~-~i-~l~~Lr~L~l~~~~i~~L---i~~l~~L~ 596 (617)
.++.+.+.... ...+....|.++++|+.|+|+++.+. .++. .+ .+.+|++|+++++.+..+ ++.+.+|+
T Consensus 193 ~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 193 SLTELHLDGNK---ITKVDAASLKGLNNLAKLGLSFNSIS---AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp TCSEEECTTSC---CCEECTGGGTTCTTCCEEECCSSCCC---EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred cCCEEECCCCc---CCccCHHHhcCCCCCCEEECCCCcCc---eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 44555444332 22334556777777777777777554 4443 44 667777777777777777 56777777
Q ss_pred EEecCCCCccccCC
Q 037173 597 SLKCLSAKLNNFGM 610 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~ 610 (617)
+|+|++++|+.+|.
T Consensus 267 ~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 267 VVYLHNNNISAIGS 280 (330)
T ss_dssp EEECCSSCCCCCCT
T ss_pred EEECCCCcCCccCh
Confidence 77777777777654
No 169
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.36 E-value=0.00097 Score=66.31 Aligned_cols=27 Identities=41% Similarity=0.679 Sum_probs=23.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.++.+.|+|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999874
No 170
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.36 E-value=0.00022 Score=71.63 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=63.7
Q ss_pred CCCCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC--CCC-CCCCceEEEecCCCCccc-ccccC
Q 037173 518 TGTEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL--DGV-LFAELRHLEWQQYPLKTL-NIHAE 593 (617)
Q Consensus 518 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp--~~i-~l~~Lr~L~l~~~~i~~L-i~~l~ 593 (617)
....+++.+.+..........+....+..+++|+.|+|+++.+. ..+ ..+ .+.+|++|+|+++.|+.+ ..-..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC---SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC---cccchhhhhhcCCCCEEECCCCccChhhhhccC
Confidence 34567777777655442112344566778899999999988765 333 233 678999999999998888 22128
Q ss_pred CeeEEecCCCCccccCC
Q 037173 594 NLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~ 610 (617)
+|++|||++++|+.+|.
T Consensus 275 ~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp EEEEEECCSSCCCSCCC
T ss_pred CceEEECCCCCCCCChh
Confidence 89999999999988876
No 171
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.34 E-value=0.0003 Score=70.34 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~ 593 (617)
...++.+.+...... ....+..|..+++|+.|+|+++.+. .+ |..+ .+.+|++|+++++.+..+ +..+.
T Consensus 149 l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQCQLE---QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp CTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred CcCCCEEECCCCccc--cccchhHHhhCcCCCEEECCCCCcC---CcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 345566655433221 1123456778888888888887655 45 4556 778888888888888777 45778
Q ss_pred CeeEEecCCCCcccc
Q 037173 594 NLVSLKCLSAKLNNF 608 (617)
Q Consensus 594 ~L~~L~l~~t~i~~L 608 (617)
+|++|+|+++++...
T Consensus 224 ~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 224 SLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCCEEECTTSCCCBC
T ss_pred cCCEeECCCCCCccc
Confidence 888888888877653
No 172
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.33 E-value=0.0022 Score=68.35 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=94.8
Q ss_pred ccCCCcccchhhHHHHHHHhhh--cC--------CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc
Q 037173 183 SENKGLVGVAWRIKEIESLLCI--RS--------AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET 252 (617)
Q Consensus 183 ~~~~~~vGR~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (617)
...++++|.+..+.++.+.... .. .-.+-+.|+|++|+|||+||+.++..... ..+.+. ...+...
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHh
Confidence 4456799999888877765531 10 11234899999999999999999987542 223333 1111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHc----CCCeEEEEeCCCCH----------------HhHHHHHcccCCC--
Q 037173 253 GRIKDLQKELLSKLLNDGNARNVESQLNRLA----RKKVLLVFDDVNHP----------------GQIESLIGCLDEL-- 310 (617)
Q Consensus 253 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~----~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~-- 310 (617)
. ..... ..+...++ ..+.++++|+++.. ..+..++..+...
T Consensus 104 ~-~g~~~----------------~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 F-VGVGA----------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp C-TTHHH----------------HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred h-hhhHH----------------HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 00000 11112221 24589999999421 1233444333322
Q ss_pred CCCcEEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHccCCc
Q 037173 311 ASGSRVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYAHGVP 378 (617)
Q Consensus 311 ~~gs~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 378 (617)
..+..++.||..+..... ......+.++..+.++-.+++..++-......+ .....++..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 234456666666654321 123457889999998888888776522111111 11455777777776
No 173
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.32 E-value=0.00022 Score=79.89 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=60.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
.+++.+.+.... ...+.+..|.++++|++|+|+++.+. .+|.. + .+.+|++|+|+++.+..+ ++++.+
T Consensus 49 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 49 SQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp TTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 455555554332 23445667888888888888888665 77764 5 888888888888888777 668888
Q ss_pred eeEEecCCCCccccC
Q 037173 595 LVSLKCLSAKLNNFG 609 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp 609 (617)
|++|+|++|++..++
T Consensus 123 L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 123 LITLDLSHNGLSSTK 137 (680)
T ss_dssp CCEEECCSSCCSCCC
T ss_pred CCEEECCCCcccccC
Confidence 899999888877654
No 174
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.32 E-value=0.00021 Score=72.02 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=68.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC--CCCCceEEEecCCCCccc--ccccCCe
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV--LFAELRHLEWQQYPLKTL--NIHAENL 595 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i--~l~~Lr~L~l~~~~i~~L--i~~l~~L 595 (617)
+.++.+.+..... ..+.+..|..+++|++|+|+++.+. .+ |..+ .+.+|++|+++++.+..+ ...+.+|
T Consensus 120 ~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L 193 (317)
T 3o53_A 120 QGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193 (317)
T ss_dssp SSCEEEECCSSCC---CSGGGBCTGGGSSEEEEECTTSCCC---EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTC
T ss_pred CCCCEEECCCCCC---CCccchhhhccCCCCEEECCCCCCC---cccHHHHhhccCcCCEEECCCCcCcccccccccccC
Confidence 4566666654432 3445567888999999999998765 33 3334 678999999999999999 6679999
Q ss_pred eEEecCCCCccccCCccccc
Q 037173 596 VSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 596 ~~L~l~~t~i~~Lp~~i~~L 615 (617)
++|+|++++|+.+|.++..+
T Consensus 194 ~~L~Ls~N~l~~l~~~~~~l 213 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEFQSA 213 (317)
T ss_dssp CEEECCSSCCCEECGGGGGG
T ss_pred CEEECCCCcCCcchhhhccc
Confidence 99999999999998876543
No 175
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.32 E-value=0.00013 Score=73.36 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=49.2
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC--CCC-CCCCceEEEecCCCCccc-------c
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL--DGV-LFAELRHLEWQQYPLKTL-------N 589 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp--~~i-~l~~Lr~L~l~~~~i~~L-------i 589 (617)
.++++.+.+..... ..++...|.++++|++|+|+++.+.....++ ..+ .+.+|++|+|++|.++.+ .
T Consensus 144 ~~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAHS---PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp CSCCCEEEEECCSS---CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred ccCCCEEEeeCCCc---chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 44566666654432 2345566677777777777776543211122 222 555666666666666544 1
Q ss_pred cccCCeeEEecCCCCcccc-CCcc
Q 037173 590 IHAENLVSLKCLSAKLNNF-GMMF 612 (617)
Q Consensus 590 ~~l~~L~~L~l~~t~i~~L-p~~i 612 (617)
..+.+|++|||++++|..+ |..+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhH
Confidence 2456666666666666554 4433
No 176
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.32 E-value=0.00039 Score=70.34 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=44.6
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc-ccccCCeeEE
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL-NIHAENLVSL 598 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L-i~~l~~L~~L 598 (617)
.++.+.+.... ...++...|.++++|++|+|+++.+. .+ |..+ .+.+|++|+++++.++.+ ..-..+|++|
T Consensus 53 ~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L 126 (330)
T 1xku_A 53 DTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126 (330)
T ss_dssp TCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEE
T ss_pred CCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEE
Confidence 44444444332 22344445666667777777666544 33 4555 666666666666666655 2222555555
Q ss_pred ecCCCCccccC
Q 037173 599 KCLSAKLNNFG 609 (617)
Q Consensus 599 ~l~~t~i~~Lp 609 (617)
+++++++..+|
T Consensus 127 ~l~~n~l~~~~ 137 (330)
T 1xku_A 127 RVHENEITKVR 137 (330)
T ss_dssp ECCSSCCCBBC
T ss_pred ECCCCcccccC
Confidence 55555555444
No 177
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.30 E-value=0.00025 Score=75.69 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=28.9
Q ss_pred hcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeEEecCCCCccccC
Q 037173 544 FSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 544 ~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~l~~t~i~~Lp 609 (617)
+..+++|++|+|+++.+. .+|. + .+.+|++|+++++.+..+ ++++.+|++|+|++|+++.+|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~---~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT---DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCC---CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred hhhhcCCCEEECCCCccC---Cchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh
Confidence 444555555555544333 3333 3 444455555554444444 444444455555444444443
No 178
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.0041 Score=61.04 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred CCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCC
Q 037173 186 KGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGR 254 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (617)
.++.|.++..++|.+.+.. +-.-.+-+.|+|++|+||||||+.++..... ..+.+. ........
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~~- 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNMY- 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhhh-
Confidence 4566777666666654310 0011122899999999999999999987532 223333 11111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH-------------HhHHHHHcccCCC--CCCcEEEE
Q 037173 255 IKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP-------------GQIESLIGCLDEL--ASGSRVII 318 (617)
Q Consensus 255 ~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~Ilv 318 (617)
....... +..+.+.. ...+.++++|+++.. .....+...+... ....-++.
T Consensus 85 ~~~~~~~-------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 85 VGESERA-------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp THHHHHH-------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred hhHHHHH-------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 1111111 11222222 346789999999631 1122222222211 22345566
Q ss_pred EcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhh
Q 037173 319 TTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 319 TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
+|..+.+... ......+.++..+.++-.++|....
T Consensus 152 ~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 6766655432 1345778899999998888888765
No 179
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.27 E-value=0.00032 Score=74.32 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=30.1
Q ss_pred hhhhcCCCCceEEEEecccCcccccc-CCCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcc
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLN 606 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~ 606 (617)
+..|..+++|++|+|+++.+. .+ |..+ .+.+|++|+++++.++.+ ...+.+|++|+|+++++.
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIR---ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhcCcccCCEEECCCCccc---ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 344455555555555554433 22 3334 445555555555555544 234455555555555443
No 180
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.27 E-value=0.00032 Score=78.58 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCccc----ccccCC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKTL----NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~ 594 (617)
..++.+.+.... ...++...|.++++|++|+|+++.+. .+| ..+ .+.+|++|+++++.+..+ ++++.+
T Consensus 73 ~~L~~L~L~~n~---l~~l~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 73 PMLKVLNLQHNE---LSQLSDKTFAFCTNLTELHLMSNSIQ---KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCC---CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred cCcCEEECCCCc---cCccChhhhccCCCCCEEECCCCccC---ccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 455666655443 22455556777777888888777654 555 345 777788888877777665 457777
Q ss_pred eeEEecCCCCccccCC
Q 037173 595 LVSLKCLSAKLNNFGM 610 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~ 610 (617)
|++|+|++++++.+|.
T Consensus 147 L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 147 LQELLLSNNKIQALKS 162 (680)
T ss_dssp CCEEECCSSCCCCBCH
T ss_pred CCEEEccCCcccccCH
Confidence 7888887777776654
No 181
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.26 E-value=0.00017 Score=70.59 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeE
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVS 597 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~ 597 (617)
..++.+.+...... .++ .+..+++|+.|+|+++.+. .+|. + .+.+|++|+++++.++.+ +.. .+|++
T Consensus 41 ~~L~~L~l~~n~i~---~l~--~l~~l~~L~~L~L~~N~i~---~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~ 110 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ---SLA--GMQFFTNLKELHLSHNQIS---DLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSR 110 (263)
T ss_dssp TTCSEEECTTSCCC---CCT--TGGGCTTCCEEECCSSCCC---CCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCE
T ss_pred CcCcEEECcCCCcc---cch--HHhhCCCCCEEECCCCccC---CChh-hccCCCCCEEECCCCccCCcCcccc-CcccE
Confidence 45667766655432 233 6788999999999999776 6666 7 889999999999999998 444 99999
Q ss_pred EecCCCCccccC
Q 037173 598 LKCLSAKLNNFG 609 (617)
Q Consensus 598 L~l~~t~i~~Lp 609 (617)
|+|++|+|+.+|
T Consensus 111 L~L~~N~l~~~~ 122 (263)
T 1xeu_A 111 LFLDNNELRDTD 122 (263)
T ss_dssp EECCSSCCSBSG
T ss_pred EEccCCccCCCh
Confidence 999999998876
No 182
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.26 E-value=0.0023 Score=65.99 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+.|+|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 183
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.25 E-value=0.00042 Score=76.29 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=42.6
Q ss_pred hhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeEEecCCCCccccCC
Q 037173 543 AFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 543 ~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
.+..+++|+.|+|+++.+. .+| .+ .+.+|++|+|++|.+..+ ++.|.+|++|+|++|+|..++.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~---~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGIS---DIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TSTTCTTCCEEECTTSCCC---CCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG
T ss_pred hhccCCCCCEEEecCCCCC---CCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh
Confidence 4566667777777666554 332 34 666777777777777777 6677777777777777766543
No 184
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.25 E-value=0.00049 Score=72.76 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=40.1
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCccccC
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~Lp 609 (617)
++...|.++++|+.|+|+++.+. .+|. + .+.+|++|+|+++.+..+ +..+.+|++|+|++++|+.++
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~---~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR---EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS---SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred eCcchhhcccccCeecCCCCcCc---cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 34445566666666666666544 4443 3 566666666666666665 446666666666666666554
No 185
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.24 E-value=0.0037 Score=67.76 Aligned_cols=158 Identities=13% Similarity=0.165 Sum_probs=79.1
Q ss_pred CcccchhhHHHHHHHhhh----cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHH
Q 037173 187 GLVGVAWRIKEIESLLCI----RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKEL 262 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (617)
..+|.+...+.+.+.+.. .......+.|+|++|+||||||+.++......|- -+. +.... ....+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~---~i~-~~~~~---~~~~~~g~~ 154 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV---RIS-LGGVR---DESEIRGHR 154 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE---EEC-CCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE---EEE-ecccc---hhhhhhhHH
Confidence 478888777777654431 1223568999999999999999999987643322 111 11111 111110000
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCHH------hHHHHHcccCCCC---------------CCcEEEEEcC
Q 037173 263 LSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHPG------QIESLIGCLDELA---------------SGSRVIITTR 321 (617)
Q Consensus 263 ~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~l~~~~---------------~gs~IlvTTR 321 (617)
...++. ....+...........-+++||+++... ....++..+.... ....||.||.
T Consensus 155 ~~~ig~--~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 155 RTYVGA--MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHHhcc--CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 000000 0001222222222234488999996421 1233333332110 3446677766
Q ss_pred Cccccc-c-cCcceEEEeccCChhHHHHHHHHhh
Q 037173 322 DKQVLE-N-CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 322 ~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
...... . ......+.+.+++.++-.+++..+.
T Consensus 233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 543221 1 0112578999999999988887765
No 186
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.24 E-value=0.00041 Score=76.49 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=38.5
Q ss_pred cChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcccc
Q 037173 539 MDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 539 ~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
+.+..|.++++|++|+|+++.+. ...|..+ .+.+|++|+|+++.+..+ ++.+.+|++|+|++|+|+.+
T Consensus 48 ~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 48 IQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp ECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred CChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 34455566666666666665443 1224445 566666666666665555 44566666666666666555
No 187
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.24 E-value=0.00045 Score=73.43 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=28.8
Q ss_pred hcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-ccccCCeeEEecCCCCcccc
Q 037173 544 FSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 544 ~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-i~~l~~L~~L~l~~t~i~~L 608 (617)
|..+++|++|+|+++.+. .+| + .+.+|++|+++++.+..+ ++.+.+|++|+|++++++.+
T Consensus 60 l~~l~~L~~L~Ls~n~l~---~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNIT---TLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp GGGCTTCSEEECCSSCCS---CCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC
T ss_pred hcccCCCCEEEccCCcCC---eEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee
Confidence 445555555555555433 222 3 444555555555554444 44444555555544444444
No 188
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.23 E-value=0.00043 Score=73.95 Aligned_cols=65 Identities=25% Similarity=0.151 Sum_probs=32.4
Q ss_pred hhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcccc
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
+..|.++++|++|+|+++.+. .+|... .+.+|++|+|+++.+..+ +..+.+|++|+|+++++..+
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCC---SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred hhhhhCCccCCEEECCCCcCC---ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 445555555555555555433 444432 455555555555554444 33445555555555444443
No 189
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.22 E-value=0.00053 Score=76.23 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=64.7
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCC-------CceEEEecCCCCccc---c
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFA-------ELRHLEWQQYPLKTL---N 589 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~-------~Lr~L~l~~~~i~~L---i 589 (617)
.++.+.+..... ..++...|..+++|+.|+|+++.+. .+|..+ .+. +|++|+|+++.+..+ +
T Consensus 434 ~L~~L~Ls~N~l---~~lp~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 434 NVSSINLSNNQI---SKFPKELFSTGSPLSSINLMGNMLT---EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp CEEEEECCSSCC---CSCCTHHHHTTCCCSEEECCSSCCS---BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred CCCEEECcCCcc---CcCCHHHHccCCCCCEEECCCCCCC---CcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 566666554443 2566777888888888888888766 777766 222 788888888888877 5
Q ss_pred c--ccCCeeEEecCCCCccccCCccccc
Q 037173 590 I--HAENLVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 590 ~--~l~~L~~L~l~~t~i~~Lp~~i~~L 615 (617)
+ .+.+|++|+|+++++..+|.++..+
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l 535 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNS 535 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcC
Confidence 5 7888888888888888888776543
No 190
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.21 E-value=0.00032 Score=75.28 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=70.6
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCceEEEecCCCCccc--ccccCCee
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
+.++.+.+..... ..+.+..|..+++|++|+|+++.+.. ..|..+ .+.+|++|+|++|.+..+ ...+.+|+
T Consensus 120 ~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCC---CSGGGBCGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCC
T ss_pred CCCCEEECCCCCC---CCCCchhhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCccccccccccCCCCC
Confidence 4566776655442 24456678899999999999997652 245555 688999999999999998 66799999
Q ss_pred EEecCCCCccccCCccccc
Q 037173 597 SLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~~i~~L 615 (617)
+|+|++|+|+.+|.++..+
T Consensus 195 ~L~Ls~N~l~~~~~~~~~l 213 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEFQSA 213 (487)
T ss_dssp EEECCSSCCCEECGGGGGG
T ss_pred EEECCCCCCCCCCHhHcCC
Confidence 9999999999998876543
No 191
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.20 E-value=0.00039 Score=71.11 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=31.0
Q ss_pred ChhhhcCCCCceEEEEecccCccccccCC--CC-CCCCceEEEecCCC-Cccc----ccccCCeeEEecCCCCcccc
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSHLD--GV-LFAELRHLEWQQYP-LKTL----NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~lp~--~i-~l~~Lr~L~l~~~~-i~~L----i~~l~~L~~L~l~~t~i~~L 608 (617)
+...|.++++|++|+|+++.+. .+|. .+ .+.+|++|+++++. +..+ +..+.+|++|+|+++++..+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCS---SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CHhHhCCCccCCEEECCCCCCc---ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 3344555555555555555433 4443 23 45555555555442 4333 33445555555555444443
No 192
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.0018 Score=73.55 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHhhhcC-------CCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCIRS-------AGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999988887775221 123578999999999999999999876
No 193
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.00059 Score=78.19 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=67.8
Q ss_pred ceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCC--------CceEEEecCCCCccc---c
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFA--------ELRHLEWQQYPLKTL---N 589 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~--------~Lr~L~l~~~~i~~L---i 589 (617)
.++.+.+..... ..++...+..+++|+.|+|+++.+. .+|..+ ... +|++|+|++|.+..+ +
T Consensus 674 ~L~~L~Ls~N~L---~~lp~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 674 NASTVTLSYNEI---QKFPTELFATGSPISTIILSNNLMT---SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp CEEEEECCSSCC---CSCCHHHHHTTCCCSEEECCSCCCS---CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred CcCEEEccCCcC---CccCHHHHccCCCCCEEECCCCcCC---ccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 566666554443 3567777888999999999998766 788776 322 899999999998888 5
Q ss_pred c--ccCCeeEEecCCCCccccCCccccc
Q 037173 590 I--HAENLVSLKCLSAKLNNFGMMFRYI 615 (617)
Q Consensus 590 ~--~l~~L~~L~l~~t~i~~Lp~~i~~L 615 (617)
+ .+.+|++|+|++|+|..+|.++..|
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L 775 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQPLNS 775 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred hhccCCCcCEEEeCCCCCCccchhhhcC
Confidence 5 8899999999999998888776654
No 194
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.19 E-value=3e-05 Score=72.40 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=59.1
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCeeE
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLVS 597 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~~ 597 (617)
+.++.+.+...... .++ .+.++++|++|+|+++.+. .+|..+ .+.+|++|+++++.+..+ ++.+.+|++
T Consensus 48 ~~L~~L~ls~n~l~---~l~--~~~~l~~L~~L~l~~n~l~---~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 48 KACKHLALSTNNIE---KIS--SLSGMENLRILSLGRNLIK---KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp TTCSEEECSEEEES---CCC--CHHHHTTCCEEEEEEEEEC---SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred CCCCEEECCCCCCc---ccc--ccccCCCCCEEECCCCCcc---cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence 45666665544322 233 6778888888888888655 677766 667888888888888888 778888888
Q ss_pred EecCCCCccccCC
Q 037173 598 LKCLSAKLNNFGM 610 (617)
Q Consensus 598 L~l~~t~i~~Lp~ 610 (617)
|+|++++|..+|.
T Consensus 120 L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 120 LYMSNNKITNWGE 132 (198)
T ss_dssp EEESEEECCCHHH
T ss_pred EECCCCcCCchhH
Confidence 8888888876654
No 195
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.17 E-value=0.00062 Score=72.21 Aligned_cols=65 Identities=20% Similarity=0.073 Sum_probs=30.3
Q ss_pred hhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCC-Cccc----ccccCCeeEEecCCCCccccC
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYP-LKTL----NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~-i~~L----i~~l~~L~~L~l~~t~i~~Lp 609 (617)
..|..+++|+.|+|+++.+. .+|.. + .+.+|++|+++++. ++.+ +..+.+|++|+|++|+++.+|
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIE---SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred hhhcccCCCCEEECCCCCcc---eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 33444444444444444333 33332 2 44444444444422 3333 335556666666666666555
No 196
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.0022 Score=72.96 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=85.1
Q ss_pred CCCcccchhhHHHHHHHhhh-----------cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhcc-
Q 037173 185 NKGLVGVAWRIKEIESLLCI-----------RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEET- 252 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 252 (617)
-+.++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.++......| +.+. .......
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 45689999999999888752 113345789999999999999999988654322 2222 1111110
Q ss_pred C-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCCeEEEEeCCCCH-------------HhHHHHHcccCCC--CCCcEE
Q 037173 253 G-RIKDLQKELLSKLLNDGNARNVESQLNRLARKKVLLVFDDVNHP-------------GQIESLIGCLDEL--ASGSRV 316 (617)
Q Consensus 253 ~-~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~I 316 (617)
. ........+ +.......+.++++|+++.. .....+...+... ..+..+
T Consensus 279 ~g~~~~~l~~v---------------f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 279 AGESESNLRKA---------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp TTHHHHHHHHH---------------HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred hhhHHHHHHHH---------------HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 0 011111111 11122456789999999411 1122222222211 234556
Q ss_pred EEEcCCccccc-cc----CcceEEEeccCChhHHHHHHHHhh
Q 037173 317 IITTRDKQVLE-NC----WVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 317 lvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
|.||....... .. .....+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66665543221 11 233567888889999999888765
No 197
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.14 E-value=0.00038 Score=70.52 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=21.7
Q ss_pred hhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL 588 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L 588 (617)
..|..+++|+.|+|+++.+. .+|..+ .+.+|++|++++++|..+
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC---BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred hHhhCCCCCCEEECCCCcCe---ecChhhhcCccCCEEECCCCCCCcc
Confidence 34445555555555554433 444444 445555555555554444
No 198
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.00048 Score=74.44 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=62.9
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc-----ccccCC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL-----NIHAEN 594 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L-----i~~l~~ 594 (617)
..+++.+.+..... ..+.+..|.++++|++|+|+++.+. .+|.. .+.+|++|+|+++.+..+ ++.+.+
T Consensus 44 l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 44 LSKLRILIISHNRI---QYLDISVFKFNQELEYLDLSHNKLV---KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp CTTCCEEECCSSCC---CEEEGGGGTTCTTCCEEECCSSCCC---EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred cccccEEecCCCcc---CCcChHHhhcccCCCEEecCCCcee---ecCcc-ccCCccEEeccCCccccccchhhhccCCc
Confidence 45677777765543 3455678899999999999998766 67777 788899999999888764 668888
Q ss_pred eeEEecCCCCccc
Q 037173 595 LVSLKCLSAKLNN 607 (617)
Q Consensus 595 L~~L~l~~t~i~~ 607 (617)
|++|+|++++|..
T Consensus 117 L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 117 LKFLGLSTTHLEK 129 (520)
T ss_dssp CCEEEEEESSCCG
T ss_pred ceEEEecCcccch
Confidence 8888888887753
No 199
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.12 E-value=1.6e-05 Score=74.31 Aligned_cols=61 Identities=18% Similarity=0.039 Sum_probs=32.1
Q ss_pred hhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-----ccccCCeeEEecCCCCccc
Q 037173 543 AFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-----NIHAENLVSLKCLSAKLNN 607 (617)
Q Consensus 543 ~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l~~L~~L~l~~t~i~~ 607 (617)
.+..+++|++|+|+++.+. .+| .+ .+.+|++|+++++.+..+ +..+.+|++|++++|.+..
T Consensus 88 ~~~~~~~L~~L~L~~N~l~---~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIA---SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHHHCSEEEEEEEECC---CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred hhhcCCcCCEEECcCCcCC---cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 3444555555666555444 333 34 455555566655555543 3455555566665555543
No 200
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.00061 Score=78.06 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=52.1
Q ss_pred CceEEEEeeccccccccccCh-hhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---ccccCC-
Q 037173 521 EAIKGISLDMNKVNRKIHMDS-FAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---NIHAEN- 594 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---i~~l~~- 594 (617)
+.++.+.+...... .++. ..|.++++|+.|+|+++.+. .+| .+ .+.+|++|+|+++.+..+ ++.+.+
T Consensus 548 ~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~ 620 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNKVR---HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620 (876)
T ss_dssp TTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSCCC---BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTT
T ss_pred CCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCCcc---cch-hhcCCCcceEEECcCCccccchHHHhhcccc
Confidence 45566655544331 3332 25666777777777766554 566 55 666677777776666666 556666
Q ss_pred eeEEecCCCCccccCCccc
Q 037173 595 LVSLKCLSAKLNNFGMMFR 613 (617)
Q Consensus 595 L~~L~l~~t~i~~Lp~~i~ 613 (617)
|++|+|++|++..+|..+.
T Consensus 621 L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp CCEEECCSSCCCSCCSCCC
T ss_pred CCEEECcCCCCCcCchhhh
Confidence 7777776666666665543
No 201
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.12 E-value=0.00053 Score=74.61 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=43.5
Q ss_pred hhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc---------------------ccccCCeeEEe
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL---------------------NIHAENLVSLK 599 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L---------------------i~~l~~L~~L~ 599 (617)
..+..+++|++|+|+++.+. .+|..+ .+.+|++|+++++.++.+ ++.+.+|++|+
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC---CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred hhhhcCCCCCEEECCCCCCc---cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 34666677777777766554 566666 666666666666665544 34677777888
Q ss_pred cCCCCccccCC
Q 037173 600 CLSAKLNNFGM 610 (617)
Q Consensus 600 l~~t~i~~Lp~ 610 (617)
|++++|+.+|.
T Consensus 458 Ls~N~l~~ip~ 468 (549)
T 2z81_A 458 ISRNKLKTLPD 468 (549)
T ss_dssp CCSSCCSSCCC
T ss_pred CCCCccCcCCC
Confidence 87777777775
No 202
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.09 E-value=0.00072 Score=68.88 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=64.6
Q ss_pred CceEEEEeec-cccccccccChhhhcCCCCceEEEEecccCccccccCCC-C-CCCCceEEEecCCCCccc---ccccCC
Q 037173 521 EAIKGISLDM-NKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDG-V-LFAELRHLEWQQYPLKTL---NIHAEN 594 (617)
Q Consensus 521 ~~~~~l~l~~-~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~-i-~l~~Lr~L~l~~~~i~~L---i~~l~~ 594 (617)
..++.+.+.. .. ...++...|..+.+|+.|+|+++.+. .+|.. + .|.+|++|+|+++.|..+ ++....
T Consensus 31 ~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 31 ENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104 (347)
T ss_dssp SCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCC---EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred CCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccc---eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence 4567777653 33 34567788999999999999999776 66654 5 899999999999999999 555555
Q ss_pred eeEEecCCCCccc
Q 037173 595 LVSLKCLSAKLNN 607 (617)
Q Consensus 595 L~~L~l~~t~i~~ 607 (617)
|++|+|.++.+.-
T Consensus 105 L~~l~l~~N~~~c 117 (347)
T 2ifg_A 105 LQELVLSGNPLHC 117 (347)
T ss_dssp CCEEECCSSCCCC
T ss_pred ceEEEeeCCCccC
Confidence 9999999988763
No 203
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.08 E-value=0.00055 Score=75.37 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=59.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
.+.++.+.+..+... .+ ..|..+++|+.|+|++|.+. .++. + .+.+|+.|+|++|.|..+ +..|.+|+
T Consensus 130 l~~L~~L~Ls~N~l~---~l--~~l~~l~~L~~L~Ls~N~l~---~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~ 200 (605)
T 1m9s_A 130 LPQLESLYLGNNKIT---DI--TVLSRLTKLDTLSLEDNQIS---DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLD 200 (605)
T ss_dssp CTTCSEEECCSSCCC---CC--GGGGSCTTCSEEECCSSCCC---CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred CCccCEEECCCCccC---Cc--hhhcccCCCCEEECcCCcCC---Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCC
Confidence 355666666554432 12 46778888888888888665 4444 6 778888888888888888 77888888
Q ss_pred EEecCCCCccccCC
Q 037173 597 SLKCLSAKLNNFGM 610 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~ 610 (617)
+|+|++|++...|.
T Consensus 201 ~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 201 VLELFSQECLNKPI 214 (605)
T ss_dssp EEECCSEEEECCCC
T ss_pred EEEccCCcCcCCcc
Confidence 88888888776654
No 204
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.02 E-value=0.0012 Score=72.80 Aligned_cols=38 Identities=32% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc
Q 037173 546 KMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL 588 (617)
Q Consensus 546 ~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L 588 (617)
.+++|++|+|+++.+. .+|. .+.+|++|+|++|.++.+
T Consensus 79 ~l~~L~~L~Ls~N~l~---~lp~--~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT---SLPV--LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp CCTTCCEEEECSCCCS---CCCC--CCTTCCEEEECSCCCCCC
T ss_pred cCCCCCEEEcCCCcCC---cCCC--CCCCCCEEECcCCcCCCC
Confidence 3455555555555443 3443 344555555555544444
No 205
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.02 E-value=0.00061 Score=68.41 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCceEEEEeeccccccccccChhhhcCC-----CCceEEEEecccCccccccC-CCC-CCCCceEEEecCCCCcc----c
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKM-----PKLRFLKFYGFENKCMVSHL-DGV-LFAELRHLEWQQYPLKT----L 588 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~-----~~LrvL~l~~~~~~~~~~lp-~~i-~l~~Lr~L~l~~~~i~~----L 588 (617)
.+.++.+.+...... .. +..|..+ ++|++|+|+++.+. .+| ..+ .+.+|++|+++++.+.. .
T Consensus 120 l~~L~~L~Ls~N~l~---~~-~~~~~~l~~~~~~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 120 GPDLNILNLRNVSWA---TR-DAWLAELQQWLKPGLKVLSIAQAHSL---NFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SCCCSEEEEESCBCS---SS-SSHHHHHHTTCCTTCCEEEEESCSCC---CCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred CCCccEEEccCCCCc---ch-hHHHHHHHHhhcCCCcEEEeeCCCCc---cchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 455666666544332 12 2445554 78888888887655 555 556 78888888888887432 1
Q ss_pred --c--cccCCeeEEecCCCCccccC
Q 037173 589 --N--IHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 589 --i--~~l~~L~~L~l~~t~i~~Lp 609 (617)
+ +.+.+|++|+|++++|+.+|
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHHHhccCCCCCEEECCCCcCcchH
Confidence 2 67888888888888887443
No 206
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.01 E-value=0.00048 Score=73.44 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccCCee
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAENLV 596 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~~L~ 596 (617)
.+.++.+.+...... .+++ |.++++|++|+++++.+. .++. + .+.+|++|++++|.+..+ +.++.+|+
T Consensus 67 l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~---~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIA---DITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCC---CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred hcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccc---cChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCC
Confidence 355677766654332 2232 888999999999888665 5555 7 888999999999988888 77889999
Q ss_pred EEecCCCCccccCC
Q 037173 597 SLKCLSAKLNNFGM 610 (617)
Q Consensus 597 ~L~l~~t~i~~Lp~ 610 (617)
+|+|++|++..+|.
T Consensus 138 ~L~l~~n~l~~~~~ 151 (466)
T 1o6v_A 138 RLELSSNTISDISA 151 (466)
T ss_dssp EEEEEEEEECCCGG
T ss_pred EEECCCCccCCChh
Confidence 99998888877653
No 207
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.98 E-value=0.00046 Score=73.38 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=57.8
Q ss_pred hhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-ccccCCeeEEecCCCCccccC
Q 037173 542 FAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-NIHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-i~~l~~L~~L~l~~t~i~~Lp 609 (617)
..+.++++|++|+++++.+. .+| .+ .+.+|++|+++++.++.+ ++.+.+|++|+|++|+++.+|
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~---~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSIT---DMT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCC---CCT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred cChhHcCCCCEEEccCCCcc---cCh-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee
Confidence 46778999999999999776 566 67 999999999999999999 999999999999999998876
No 208
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.92 E-value=0.0014 Score=66.68 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCC-Cccc--ccccCCe
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYP-LKTL--NIHAENL 595 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~-i~~L--i~~l~~L 595 (617)
.++++.+.+...... .+ ..|.++++|++|+++++.+. .+|. + .+.+|++|++++|. +..+ +..+.+|
T Consensus 87 l~~L~~L~L~~n~i~---~~--~~~~~l~~L~~L~l~~n~i~---~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 157 (347)
T 4fmz_A 87 LVKLTNLYIGTNKIT---DI--SALQNLTNLRELYLNEDNIS---DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157 (347)
T ss_dssp CTTCCEEECCSSCCC---CC--GGGTTCTTCSEEECTTSCCC---CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred CCcCCEEEccCCccc---Cc--hHHcCCCcCCEEECcCCccc---Cchh-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence 345555555443322 11 24667777777777766554 4444 4 66677777777664 4444 6667777
Q ss_pred eEEecCCCCccccC
Q 037173 596 VSLKCLSAKLNNFG 609 (617)
Q Consensus 596 ~~L~l~~t~i~~Lp 609 (617)
++|++++|.+..++
T Consensus 158 ~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 158 NYLTVTESKVKDVT 171 (347)
T ss_dssp CEEECCSSCCCCCG
T ss_pred cEEEecCCCcCCch
Confidence 77777777666554
No 209
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.92 E-value=0.00038 Score=69.84 Aligned_cols=88 Identities=14% Similarity=0.026 Sum_probs=60.4
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCcccccc-CCCC-CC---CCceEEEecCCCCccc-ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSH-LDGV-LF---AELRHLEWQQYPLKTL-NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~l-p~~i-~l---~~Lr~L~l~~~~i~~L-i~~l~ 593 (617)
.++++.+.+...............+..+++|+.|+|+++.+. .+ |..+ .+ .+|++|+|+++.|+.+ ..-..
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~---~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR---ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC---CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC---ccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 345555555544332011112224678899999999998765 44 6666 43 6999999999999988 33348
Q ss_pred CeeEEecCCCCccccCC
Q 037173 594 NLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~ 610 (617)
+|++|||++++|+.+|.
T Consensus 273 ~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCSCEECCSCCCCSCCC
T ss_pred CCCEEECCCCcCCCCch
Confidence 99999999999988764
No 210
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.91 E-value=0.0014 Score=72.80 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=59.5
Q ss_pred ceEEEEeeccccccccccChhhh-cCCCCceEEEEecccCccccccCCCC-CCCCceEEEecC------CCCc-cc---c
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAF-SKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQ------YPLK-TL---N 589 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~-~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~------~~i~-~L---i 589 (617)
.++.+.+...... .++...+ ..+++|+.|+|+++.+. .+|..+ .+.+|++|+|++ +.+. .+ +
T Consensus 489 ~L~~L~Ls~N~l~---~lp~~~~~~~l~~L~~L~Ls~N~l~---~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 489 LLTSIDLRFNKLT---KLSDDFRATTLPYLVGIDLSYNSFS---KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp GCCEEECCSSCCC---BCCGGGSTTTCTTCCEEECCSSCCS---SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred CccEEECcCCcCC---ccChhhhhccCCCcCEEECCCCCCC---CcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 5666666544332 4444443 48888888888888766 578888 888888888854 4433 33 6
Q ss_pred cccCCeeEEecCCCCccccCCcc
Q 037173 590 IHAENLVSLKCLSAKLNNFGMMF 612 (617)
Q Consensus 590 ~~l~~L~~L~l~~t~i~~Lp~~i 612 (617)
+.+.+|++|+|++|++..+|..+
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCC
T ss_pred hcCCCCCEEECCCCcCCccCHhH
Confidence 78888888888888888888754
No 211
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.90 E-value=0.0015 Score=71.45 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=42.7
Q ss_pred ChhhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc---ccccCCeeEEecCCCCccccCCc
Q 037173 540 DSFAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL---NIHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 540 ~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
+...|..+++|+.|+|+++.+. ...|..+ ..+|++|+|+++.|+.+ ++.+.+|++|+|++++|+.+|.+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l-~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLT--GSVFRCL-PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCC--GGGGSSC-CTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred ChhhhcCcccCCEEECCCCCCC--cchhhhh-cCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 3334555555555555555432 1222211 15777777777777777 66778888888888888888776
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.90 E-value=0.0024 Score=58.73 Aligned_cols=113 Identities=17% Similarity=0.098 Sum_probs=62.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhc--C----CCC----------C
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLN--D----GNA----------R 273 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~----~~~----------~ 273 (617)
..|.|++-.|.||||+|...+-+...+-..+.++..+... ...+...++..+.-.+.. . ... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4566677777999999999999866664455555432211 122223333332000000 0 000 0
Q ss_pred CHHHHHHHHcCCCe-EEEEeCCCC-----HHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 274 NVESQLNRLARKKV-LLVFDDVNH-----PGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 274 ~~~~l~~~L~~k~~-LlVLDdv~~-----~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
.+..+++.+.+.+| |||||++.. .-..+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12455556666665 999999832 122334444444445678899999986
No 213
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.90 E-value=0.012 Score=59.64 Aligned_cols=156 Identities=10% Similarity=-0.072 Sum_probs=99.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLARKK 286 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~~k~ 286 (617)
-.+++.++|+.|.||++.+..+.+.+. ..|+....+. .....++.++...+... -+-+.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~---------------plf~~~ 77 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQAM---------------SLFASR 77 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHHH---------------HHCCSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcCc---------------CCccCC
Confidence 456899999999999999999998753 3443221122 11224454444332111 124566
Q ss_pred eEEEEeCCCC---HHhHHHHHcccCCCCCCcEEEEEcCCc-------ccccc-cCcceEEEeccCChhHHHHHHHHhhhc
Q 037173 287 VLLVFDDVNH---PGQIESLIGCLDELASGSRVIITTRDK-------QVLEN-CWVNQIYRMKELVDVDAHKLFCQCAFR 355 (617)
Q Consensus 287 ~LlVLDdv~~---~~~~~~l~~~l~~~~~gs~IlvTTR~~-------~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 355 (617)
-++|+|+++. .+..+.+...+....+++.+|++|... .+.+. ......++..+++.++..+.+...+-.
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 7889999854 356666766665555677777766431 22222 123468899999999999888877632
Q ss_pred CCCCChhHHHHHHHHHHHccCCchHHHHH
Q 037173 356 GGHLDASYTEVTRKAIKYAHGVPLALQVL 384 (617)
Q Consensus 356 ~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 384 (617)
.. -....+.+..+++.++|.+..+...
T Consensus 158 ~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 158 LN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 22 1233567889999999998877653
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.81 E-value=0.0024 Score=73.41 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHHhhhcC-------CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 186 KGLVGVAWRIKEIESLLCIRS-------AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999998888775321 1235889999999999999999998864
No 215
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.80 E-value=0.00086 Score=76.29 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=39.8
Q ss_pred hhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcc-ccCC
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLN-NFGM 610 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~-~Lp~ 610 (617)
+..|..++.|++|+|+++.+. ..+|..+ .+++|++|+|+++.+... +..|.+|++|||+++++. .+|.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~--g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDIS--GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CHHHhccccCCEEeCcCCccC--CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 345566666666666666433 2556666 666666666666665532 556666666666666654 3443
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.78 E-value=0.0031 Score=59.36 Aligned_cols=33 Identities=18% Similarity=-0.008 Sum_probs=26.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..++.|.|++|+|||||+..++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 45899999999999999999988 2224456665
No 217
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.70 E-value=0.0024 Score=70.44 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=41.1
Q ss_pred CCceEEEEecccCccccccCCCCCCCCceEEEecCCCCcccccccCCeeEEecCCCCccccCCc
Q 037173 548 PKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTLNIHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 548 ~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~Li~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
++|+.|+|+++.+. .+|. .+.+|++|+|++|.|+.+-..+.+|++|+|++|+|+.+|..
T Consensus 61 ~~L~~L~L~~N~l~---~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNLT---SLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 119 (622)
T ss_dssp TTCSEEEECSCCCS---CCCC--CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCC
T ss_pred CCCcEEEecCCCCC---CCCC--cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCC
Confidence 67788888777655 5665 56677888888877777722667777777777776666553
No 218
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.69 E-value=0.0022 Score=72.86 Aligned_cols=71 Identities=10% Similarity=0.028 Sum_probs=40.3
Q ss_pred hhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc----ccccCCeeEEecCCCCcc-ccCCccc
Q 037173 541 SFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL----NIHAENLVSLKCLSAKLN-NFGMMFR 613 (617)
Q Consensus 541 ~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L----i~~l~~L~~L~l~~t~i~-~Lp~~i~ 613 (617)
+..|.++++|++|+|+++.+. ..+|..+ .+.+|++|++++|.+... ++.+.+|++|+|++|++. .+|..+.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLT--GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CHHHhcCCCCCEEEccCCccC--CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 344556666666666665432 2445555 566666666666665532 556666666666666554 5555543
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.60 E-value=0.0012 Score=64.40 Aligned_cols=62 Identities=18% Similarity=0.037 Sum_probs=33.5
Q ss_pred cCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc--ccccC--CeeEEecCCCCcc
Q 037173 545 SKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL--NIHAE--NLVSLKCLSAKLN 606 (617)
Q Consensus 545 ~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L--i~~l~--~L~~L~l~~t~i~ 606 (617)
.++++|+.|+|+++.+.....+|..+ .+.+|++|+|+++.|+.+ +..+. +|++|+|.++.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 34555666666665554333344444 555666666666665555 34444 5666666665554
No 220
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.57 E-value=0.0036 Score=66.37 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=50.9
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCccc--ccccCCeeEE
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTL--NIHAENLVSL 598 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~L--i~~l~~L~~L 598 (617)
..++.+.+...... .++ .|.++++|++|+++++.+. .+|.. +.+|++|+++++.+..+ ++.+.+|++|
T Consensus 131 ~~L~~L~L~~n~l~---~lp--~~~~l~~L~~L~l~~N~l~---~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE---KLP--ELQNSSFLKIIDVDNNSLK---KLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCS---SCC--CCTTCTTCCEEECCSSCCS---CCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEE
T ss_pred CCCCEEECcCCCCC---CCc--ccCCCCCCCEEECCCCcCc---ccCCC--cccccEEECcCCcCCcCccccCCCCCCEE
Confidence 35666665544332 233 3777888888888777655 44442 34677777777777666 6667777777
Q ss_pred ecCCCCccccCCc
Q 037173 599 KCLSAKLNNFGMM 611 (617)
Q Consensus 599 ~l~~t~i~~Lp~~ 611 (617)
++++|+++.+|..
T Consensus 201 ~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 201 YADNNSLKKLPDL 213 (454)
T ss_dssp ECCSSCCSSCCCC
T ss_pred ECCCCcCCcCCCC
Confidence 7777666665543
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.47 E-value=0.0087 Score=56.69 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.+++|.|++|+|||||+..++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999977544333455554
No 222
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.43 E-value=0.0046 Score=67.32 Aligned_cols=30 Identities=3% Similarity=0.067 Sum_probs=15.4
Q ss_pred eEEEecCCCCccc---ccccCCeeEEecCCCCc
Q 037173 576 RHLEWQQYPLKTL---NIHAENLVSLKCLSAKL 605 (617)
Q Consensus 576 r~L~l~~~~i~~L---i~~l~~L~~L~l~~t~i 605 (617)
++|+|++|.|+.+ ++++.+|++|+|++|++
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 5555555555554 44455555555555544
No 223
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.41 E-value=0.0044 Score=61.51 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457789999999999999999986
No 224
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.33 E-value=0.0023 Score=66.18 Aligned_cols=91 Identities=10% Similarity=0.079 Sum_probs=66.9
Q ss_pred CceEEEEeeccccccccc---cChhhhcCCCCceEEEEecccCcc--ccccCCCC-CCCCceEEEecCCCCccc------
Q 037173 521 EAIKGISLDMNKVNRKIH---MDSFAFSKMPKLRFLKFYGFENKC--MVSHLDGV-LFAELRHLEWQQYPLKTL------ 588 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~LrvL~l~~~~~~~--~~~lp~~i-~l~~Lr~L~l~~~~i~~L------ 588 (617)
+.++.+.+..+... ... +.+..+.++++|++|+|+++.+.. ...+|..+ .+.+|++|+|++|.|...
T Consensus 187 ~~L~~L~L~~n~l~-~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSCCC-HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCC-HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 46777777655432 111 223377899999999999987521 13677777 888999999999998764
Q ss_pred --c--cccCCeeEEecCCCCccc-----cCCcc
Q 037173 589 --N--IHAENLVSLKCLSAKLNN-----FGMMF 612 (617)
Q Consensus 589 --i--~~l~~L~~L~l~~t~i~~-----Lp~~i 612 (617)
+ +.+.+|++|+|++|+|.. +|..+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 2 448999999999999987 77655
No 225
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.31 E-value=0.0046 Score=63.02 Aligned_cols=85 Identities=13% Similarity=-0.010 Sum_probs=54.7
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCce-EEEecCCCCccc----ccccC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELR-HLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr-~L~l~~~~i~~L----i~~l~ 593 (617)
..++.+.+.... ...++...|.++++|++|+|+++.+. ..+|... .+.+|+ ++.+.++.+..+ ...+.
T Consensus 30 ~~l~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~i~--~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTK---LRVIQKGAFSGFGDLEKIEISQNDVL--EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCC---CSEECTTSSTTCTTCCEEEEECCTTC--CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred CCCCEEEccCCc---CCCcCHHHHcCCCCCCEEECcCCCCC--CccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 346666666544 33566778889999999999888643 1344433 555544 355556667766 34677
Q ss_pred CeeEEecCCCCccccCC
Q 037173 594 NLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~ 610 (617)
+|++|++++++|+.+|.
T Consensus 105 ~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TCCEEEEEEECCSSCCC
T ss_pred ccccccccccccccCCc
Confidence 77777777777776665
No 226
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.28 E-value=0.0065 Score=66.17 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCCCCCCceEEEecCCCCcccccccCCeeEEe
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGVLFAELRHLEWQQYPLKTLNIHAENLVSLK 599 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i~l~~Lr~L~l~~~~i~~Li~~l~~L~~L~ 599 (617)
..+++.+.+..+... .++. |.+ +|+.|+|+++.+. .+|. .+.+|++|+|+++.|+.+-..+.+|++|+
T Consensus 99 l~~L~~L~Ls~N~l~---~ip~--l~~--~L~~L~Ls~N~l~---~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLS---TLPE--LPA--SLKHLDVDNNQLT---MLPE--LPALLEYINADNNQLTMLPELPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCS---CCCC--CCT--TCCEEECCSSCCS---CCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred cCCCCEEEccCCCCC---Ccch--hhc--CCCEEECCCCcCC---CCCC--cCccccEEeCCCCccCcCCCcCCCcCEEE
Confidence 345555555544322 2333 333 7777777777555 4555 56677777777777766622566677777
Q ss_pred cCCCCccccCC
Q 037173 600 CLSAKLNNFGM 610 (617)
Q Consensus 600 l~~t~i~~Lp~ 610 (617)
|++|+|+.+|.
T Consensus 167 Ls~N~L~~lp~ 177 (571)
T 3cvr_A 167 VRNNQLTFLPE 177 (571)
T ss_dssp CCSSCCSCCCC
T ss_pred CCCCCCCCcch
Confidence 77776666664
No 227
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.24 E-value=0.019 Score=58.21 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=35.3
Q ss_pred HHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 196 KEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 196 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..|...|. .+=..-.++.|.|++|+||||||..++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45555553 22233579999999999999999999988665444567776
No 228
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.19 E-value=0.0047 Score=62.95 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=42.5
Q ss_pred cChhhhcCCC-CceEEEEecccCccccccCCCC-CCCCceEEEecC-CCCccc----ccccCCeeEEecCCCCccccCCc
Q 037173 539 MDSFAFSKMP-KLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQ-YPLKTL----NIHAENLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 539 ~~~~~~~~~~-~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~-~~i~~L----i~~l~~L~~L~l~~t~i~~Lp~~ 611 (617)
++...|..+. .|++|+|+++.+. .+|..+ ...+|+.|.+.+ +.++.+ ...+.+|++|||++++|+.+|.+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~---~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCC---EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred ccccchhhcchhhhhhcccccccc---CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 3444455543 5667777776555 666665 555666676653 446666 24666777777777777766653
No 229
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.14 E-value=0.0011 Score=68.70 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCCceEEEEeeccccccc-cccChhhhcCCCCceEEEEecccCccc--cccCCCC-C--CCCceEEEecCCCCcc-----
Q 037173 519 GTEAIKGISLDMNKVNRK-IHMDSFAFSKMPKLRFLKFYGFENKCM--VSHLDGV-L--FAELRHLEWQQYPLKT----- 587 (617)
Q Consensus 519 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~LrvL~l~~~~~~~~--~~lp~~i-~--l~~Lr~L~l~~~~i~~----- 587 (617)
..++++.+.+........ ....+..+.++++|+.|+|++|.+... ..+|..+ . +.+|++|+|++|.+..
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 456788887765543100 022345788999999999999976522 2345655 4 8899999999999998
Q ss_pred c---c-cccCCeeEEecCCCCccccC
Q 037173 588 L---N-IHAENLVSLKCLSAKLNNFG 609 (617)
Q Consensus 588 L---i-~~l~~L~~L~l~~t~i~~Lp 609 (617)
+ + .++.+|++|+|++|++....
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhcCCCceEEEccCCcCCcch
Confidence 5 4 56899999999999987654
No 230
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.13 E-value=0.056 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998754
No 231
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.11 E-value=0.0026 Score=57.59 Aligned_cols=83 Identities=8% Similarity=-0.022 Sum_probs=56.6
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CC----CCceEEEecCCC-Cccc----c
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LF----AELRHLEWQQYP-LKTL----N 589 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l----~~Lr~L~l~~~~-i~~L----i 589 (617)
...++.+.+..+... ......+.++++|+.|+|++|..-....+ ..+ .+ .+|++|+|++|+ |+.- +
T Consensus 60 ~~~L~~LDLs~~~It---d~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 60 KYKIQAIDATDSCIM---SIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCCEEEEEEESCCCC---GGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CceEeEEeCcCCCcc---HHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 446777777655422 22234568999999999999952111111 112 22 369999999987 8775 7
Q ss_pred cccCCeeEEecCCC-Ccc
Q 037173 590 IHAENLVSLKCLSA-KLN 606 (617)
Q Consensus 590 ~~l~~L~~L~l~~t-~i~ 606 (617)
.++.+|++|+|++| +|+
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 78999999999998 455
No 232
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.10 E-value=0.073 Score=55.44 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=25.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876654
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.09 E-value=0.01 Score=55.12 Aligned_cols=45 Identities=31% Similarity=0.367 Sum_probs=34.0
Q ss_pred chhhHHHHHHHhhhc-CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 191 VAWRIKEIESLLCIR-SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 191 R~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
|++.++.+.+.+... .....+++|.|++|+||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 555667777666532 234679999999999999999999887543
No 234
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.03 E-value=0.0073 Score=63.97 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=18.3
Q ss_pred CCCCceEEEecCCCCcccccccCCeeEEecCCCCccccCC
Q 037173 571 LFAELRHLEWQQYPLKTLNIHAENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 571 ~l~~Lr~L~l~~~~i~~Li~~l~~L~~L~l~~t~i~~Lp~ 610 (617)
.+.+|++|+++++.+..+-..+.+|++|++++|+++.+|.
T Consensus 235 ~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc
Confidence 4445555555555444441123444455554444444443
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.03 E-value=0.0099 Score=66.74 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 185 NKGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
-..+.|.++..++|.+.+... ....+-+.++|++|.|||.||+++++..... ++. +
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~----v---- 542 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----I---- 542 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE----C----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE----e----
Confidence 345678888888887765311 1224568899999999999999999875332 222 1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCCeEEEEeCCCCH----------------HhHHHHHcccCCCC--CCc
Q 037173 254 RIKDLQKELLSKLLNDGNARNVESQLNRL-ARKKVLLVFDDVNHP----------------GQIESLIGCLDELA--SGS 314 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~gs 314 (617)
... +++....+.. ...+..+.+.- +..+++|+||+++.. .....++..+.... .+.
T Consensus 543 ~~~----~l~s~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 543 KGP----ELLTMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp CHH----HHHTTTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred ccc----hhhccccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCE
Confidence 111 1111111100 00223333333 457899999999521 01334444433222 233
Q ss_pred EEEEEcCCcccccc-----cCcceEEEeccCChhHHHHHHHHhh
Q 037173 315 RVIITTRDKQVLEN-----CWVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 315 ~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
-||.||..+..... ......+.++..+.++-.++|..+.
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred EEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 34445554433221 1345677887777777777776665
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.03 E-value=0.0038 Score=63.12 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 185 NKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
...++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 357999999999888877643 25889999999999999999987543
No 237
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.99 E-value=0.0037 Score=63.73 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=62.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEE-EechhhhccCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCCCe
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA-LDVREAEETGRIKDLQKELLSKLLNDGNARNV-ESQLNRLARKKV 287 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~l~~~L~~k~~ 287 (617)
.+++|+|+.|+|||||.+.+...+.......++. .+..+....... .+..+.......... ..+...|...+=
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-----~~v~q~~~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-----CLVNQREVHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-----SEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-----cceeeeeeccccCCHHHHHHHHhhhCcC
Confidence 4899999999999999999988765443333322 211000000000 000000000111122 567778888999
Q ss_pred EEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCccc
Q 037173 288 LLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQV 325 (617)
Q Consensus 288 LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v 325 (617)
+|++|.+.+.+.++.+.... ..|..|++|+-....
T Consensus 199 villDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 199 IILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp EEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred EEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence 99999998877766655442 246678888876543
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.90 E-value=0.0064 Score=56.89 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+++|.+.+........+++|.|+.|+|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444432234467999999999999999999988765
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.88 E-value=0.0035 Score=56.89 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.+|.|+|++|+||||+|+.++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998753
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.86 E-value=0.027 Score=56.40 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++|+|++|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46799999999999999999999886654 3334443
No 241
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.85 E-value=0.0057 Score=62.69 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHHHhh-------------hcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 187 GLVGVAWRIKEIESLLC-------------IRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 187 ~~vGR~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.++|.+..++.+...+. ......+.+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36888888888877662 011134578899999999999999999876
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.83 E-value=0.0077 Score=56.88 Aligned_cols=105 Identities=19% Similarity=0.087 Sum_probs=58.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHcC-
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNA---RNVESQLNRLAR- 284 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~~l~~~L~~- 284 (617)
..++.|+|..|+||||++..++++...+-..++.+...-.. . .. .+++..++..... .....+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI----RNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH----HHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 46899999999999999999999876654445544311110 0 00 1122222211111 022344444433
Q ss_pred ---C-CeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 285 ---K-KVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 285 ---k-~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
. .-+||+|.+. +.++++.+.. +.. .|..||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 3 4499999995 2344444432 221 378899998853
No 243
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.75 E-value=0.0015 Score=66.01 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=47.4
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEeccc-CccccccCCCC-CCCCceEEEecCC-CCcc--c---ccc
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFE-NKCMVSHLDGV-LFAELRHLEWQQY-PLKT--L---NIH 591 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~-~~~~~~lp~~i-~l~~Lr~L~l~~~-~i~~--L---i~~ 591 (617)
.++++.+.+..... .......+.++++|+.|+|++|. +. ...+|..+ .+.+|++|++++| .+.. + +..
T Consensus 117 ~~~L~~L~L~~~~l---~~~~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 117 CSKLQNLSLEGLRL---SDPIVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp BCCCSEEECTTCBC---CHHHHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCCEEeCcCccc---CHHHHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 44566665554322 11223456667777777777762 22 11244445 6667777777777 6664 2 556
Q ss_pred cC-CeeEEecCCCC
Q 037173 592 AE-NLVSLKCLSAK 604 (617)
Q Consensus 592 l~-~L~~L~l~~t~ 604 (617)
+. +|++|+|++|.
T Consensus 193 l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 193 VSETITQLNLSGYR 206 (336)
T ss_dssp SCTTCCEEECCSCG
T ss_pred cccCCCEEEeCCCc
Confidence 66 77777777773
No 244
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.72 E-value=0.0025 Score=58.54 Aligned_cols=26 Identities=23% Similarity=-0.073 Sum_probs=22.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999888877543
No 245
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.66 E-value=0.0052 Score=55.24 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.+|+|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998753
No 246
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.66 E-value=0.019 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|.|.|++|+||+|.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999864
No 247
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.65 E-value=0.041 Score=48.93 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=59.0
Q ss_pred CchHHHHHHHHhhCCCceeecC-CcC--C------CCcchHHHHHHHHhcceEEEEecCCccCChhhHHHHHHHHHHhhh
Q 037173 29 DNFTSHLHYVLSLKGIKTFVDD-QLI--R------GDNISRSLLDTIEASSISIIIFSERYASSRWCLDELLKILECKHD 99 (617)
Q Consensus 29 ~~~~~~l~~~L~~~g~~~~~d~-~~~--~------g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~ 99 (617)
......|...-....+-.|.|. |.. . -+.|-..+.+.|..|+.+|+++|++...|.|-.+|++.++. +
T Consensus 31 i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~ 107 (189)
T 3hyn_A 31 FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---T 107 (189)
T ss_dssp HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---T
T ss_pred HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---h
Confidence 3355667666666666566775 552 1 23477889999999999999999999999999999988872 3
Q ss_pred CCCEEEEEEee
Q 037173 100 YGQIVIPVFYR 110 (617)
Q Consensus 100 ~~~~vipi~~~ 110 (617)
.+.+||-|..+
T Consensus 108 ~~~PII~Vy~~ 118 (189)
T 3hyn_A 108 KGLPVIVIYPD 118 (189)
T ss_dssp TCCCEEEEETT
T ss_pred cCCcEEEEECC
Confidence 34567777655
No 248
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.59 E-value=0.0018 Score=65.34 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=63.4
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecc-cCccccccCCCC-CCC-CceEEEecCCC--C--ccc---c
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGF-ENKCMVSHLDGV-LFA-ELRHLEWQQYP--L--KTL---N 589 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~-~~~~~~~lp~~i-~l~-~Lr~L~l~~~~--i--~~L---i 589 (617)
.++++.+.+..+..- ........+.++++|+.|+|++| .+. ...+|..+ .+. +|++|++++|. + ..+ +
T Consensus 141 ~~~L~~L~L~~~~~l-~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 141 NSNLVRLNLSGCSGF-SEFALQTLLSSCSRLDELNLSWCFDFT-EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp CTTCSEEECTTCBSC-CHHHHHHHHHHCTTCCEEECCCCTTCC-HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CCCCCEEECCCCCCC-CHHHHHHHHhcCCCCCEEcCCCCCCcC-hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 567888887755211 11112456788999999999998 554 22356656 777 99999999994 4 344 6
Q ss_pred cccCCeeEEecCCCC-cc-ccCCccc
Q 037173 590 IHAENLVSLKCLSAK-LN-NFGMMFR 613 (617)
Q Consensus 590 ~~l~~L~~L~l~~t~-i~-~Lp~~i~ 613 (617)
..+.+|++|+|++|. +. ..|..+.
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 689999999999998 54 4454443
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.57 E-value=0.072 Score=54.31 Aligned_cols=50 Identities=20% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 195 IKEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 195 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...|..+|. .+=....++.|.|.+|+||||||..++......-..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 334555553 12223458899999999999999999988655445677877
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.52 E-value=0.015 Score=57.39 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=25.7
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999887654
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.48 E-value=0.04 Score=55.33 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
....+++|+|+.|+||||++..++......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999999876543
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.48 E-value=0.042 Score=55.75 Aligned_cols=49 Identities=20% Similarity=0.077 Sum_probs=34.6
Q ss_pred HHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 196 KEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 196 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..|...|. .+=....++.|.|++|+||||||..++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34445553 22223468999999999999999999987655445567776
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.45 E-value=0.045 Score=55.63 Aligned_cols=49 Identities=20% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 196 KEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 196 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..|..+|. .+=...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444553 12223468999999999999999999988655545677777
No 254
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.42 E-value=0.015 Score=55.80 Aligned_cols=41 Identities=17% Similarity=-0.017 Sum_probs=29.0
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 193 WRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+.++..-..........|+|.|++|+||||+|+.+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333233356789999999999999999998764
No 255
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.41 E-value=0.0079 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...|+|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999875
No 256
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.41 E-value=0.014 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998653
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.41 E-value=0.0073 Score=55.15 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+.|.|+|++|+||||+|+.++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999875
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.40 E-value=0.074 Score=52.60 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=27.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhcc--CceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCF--EGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 244 (617)
++.|.|++|+||||||.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999998866542 3467776
No 259
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.40 E-value=0.01 Score=60.28 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=34.8
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+.++|.+...+.+...+.... ..-+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886655443332222 22488999999999999999998753
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.39 E-value=0.0087 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.36 E-value=0.0049 Score=56.52 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=22.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999987654433
No 262
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.30 E-value=0.085 Score=52.35 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...+++|+|++|+||||++..++......
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887654
No 263
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.29 E-value=0.0039 Score=65.94 Aligned_cols=84 Identities=19% Similarity=0.076 Sum_probs=55.3
Q ss_pred CceEEEEeeccccccc-cccChhhhcCCCCceEEEEecccCccccccCCCC--CCC----CceEEEecCCCCcc-----c
Q 037173 521 EAIKGISLDMNKVNRK-IHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFA----ELRHLEWQQYPLKT-----L 588 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~----~Lr~L~l~~~~i~~-----L 588 (617)
+.++.+.+..+..... .......+..+++|++|+|+++.+.. .-+..+ .+. +|++|+|++|.+.. +
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 4567777765543200 01224567788999999998876541 111122 333 69999999998883 3
Q ss_pred ---ccccCCeeEEecCCCCcc
Q 037173 589 ---NIHAENLVSLKCLSAKLN 606 (617)
Q Consensus 589 ---i~~l~~L~~L~l~~t~i~ 606 (617)
+..+.+|++|+|++|++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHccCCceeEEECCCCcCc
Confidence 678889999999998875
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.27 E-value=0.02 Score=53.01 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...+|+|.|++|+|||||++.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998865
No 265
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.26 E-value=0.0099 Score=60.79 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=60.7
Q ss_pred CceEEEEeeccccccccccCh----hhhcCCC-CceEEEEecccCccccccCCCC-C-----CCCceEEEecCCCCccc-
Q 037173 521 EAIKGISLDMNKVNRKIHMDS----FAFSKMP-KLRFLKFYGFENKCMVSHLDGV-L-----FAELRHLEWQQYPLKTL- 588 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~----~~~~~~~-~LrvL~l~~~~~~~~~~lp~~i-~-----l~~Lr~L~l~~~~i~~L- 588 (617)
..++.+.+...... .... ..|.+++ +|+.|+|+++.+.. .-+..+ . ..+|++|+|++|.+...
T Consensus 22 ~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGF--KNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TTCCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEECcCCCCCH--HHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 34777777655432 3333 6788898 89999999986651 112233 2 28999999999998865
Q ss_pred ---ccc----c-CCeeEEecCCCCccccCC
Q 037173 589 ---NIH----A-ENLVSLKCLSAKLNNFGM 610 (617)
Q Consensus 589 ---i~~----l-~~L~~L~l~~t~i~~Lp~ 610 (617)
++. + .+|++|+|++|+|...+.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 333 3 899999999999987763
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.25 E-value=0.045 Score=54.71 Aligned_cols=63 Identities=16% Similarity=0.023 Sum_probs=40.7
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHH
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSK 265 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (617)
..|..++ .+=....++.|.|.+|+||||||..++.....+-..++|+. -.....++...+...
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 3444444 22334468999999999999999999987554435566665 224455555555543
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.24 E-value=0.0085 Score=53.87 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEEeccCCChhhHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAV 229 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~ 229 (617)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 268
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.18 E-value=0.095 Score=54.73 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999987765
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.13 E-value=0.012 Score=62.59 Aligned_cols=44 Identities=23% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 45899999998888777533 368899999999999999999865
No 270
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.11 E-value=0.012 Score=60.20 Aligned_cols=79 Identities=11% Similarity=0.118 Sum_probs=56.5
Q ss_pred ceEEEEeeccccccccccChhhhcCC-----CCceEEEEecccCccccccCCC-----C-CC-CCceEEEecCCCCccc-
Q 037173 522 AIKGISLDMNKVNRKIHMDSFAFSKM-----PKLRFLKFYGFENKCMVSHLDG-----V-LF-AELRHLEWQQYPLKTL- 588 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~~~~~~~~~~~~-----~~LrvL~l~~~~~~~~~~lp~~-----i-~l-~~Lr~L~l~~~~i~~L- 588 (617)
.++.+.+...... ......|..+ ++|+.|+|+++.+. ..+.. + .+ .+|++|+|++|.+...
T Consensus 52 ~L~~L~Ls~N~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 52 SVTSLNLSGNSLG---FKNSDELVQILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred ceeEEECcCCCCC---HHHHHHHHHHHhccCCCccEEECcCCcCC---hHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 6888887765432 2233344443 99999999999765 22221 3 33 7999999999998887
Q ss_pred ---ccc-----cCCeeEEecCCCCcc
Q 037173 589 ---NIH-----AENLVSLKCLSAKLN 606 (617)
Q Consensus 589 ---i~~-----l~~L~~L~l~~t~i~ 606 (617)
++. ..+|++|+|++|++.
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCC
Confidence 222 479999999999988
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.10 E-value=0.013 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.09 E-value=0.022 Score=57.35 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=32.5
Q ss_pred chhhHHHHHHHhhh--cCCCeEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 191 VAWRIKEIESLLCI--RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 191 R~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
-+...+.+.+.+.. ..+....+.|+|++|+||||+++.++......|
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34444555554431 234456789999999999999999998765444
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.07 E-value=0.012 Score=54.00 Aligned_cols=24 Identities=42% Similarity=0.391 Sum_probs=21.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999864
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.05 E-value=0.012 Score=52.85 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.++|+|.|++|+||||+|+.++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.02 E-value=0.025 Score=51.64 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
...+|.|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988654
No 276
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.02 E-value=0.031 Score=56.99 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..++.+.+.....+..+|+|+|.+|+|||||+..++......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444344567899999999999999999998875443
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.01 E-value=0.014 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=23.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.+|.|.|++|+||||+++.++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.00 E-value=0.013 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988653
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.99 E-value=0.011 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998864
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.97 E-value=0.0097 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+.|.|+|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999775
No 281
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.95 E-value=0.025 Score=50.79 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.++++|.|..|+|||||+..+...+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999999887654
No 282
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.88 E-value=0.02 Score=52.84 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 193 WRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.-+..+..++.. -+....+.|+|++|+|||++|..+++.+.
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345666666652 22234689999999999999999998764
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.87 E-value=0.015 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++|.|++|+||||||+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999864
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.84 E-value=0.012 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
No 285
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.81 E-value=0.025 Score=52.77 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=24.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
..+|+|.|++|+||||+|+.++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999865443
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.81 E-value=0.019 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|+|.|++|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998763
No 287
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.80 E-value=0.014 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.7
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998754
No 288
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.79 E-value=0.028 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..|+|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999886543
No 289
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.78 E-value=0.18 Score=52.94 Aligned_cols=64 Identities=16% Similarity=-0.001 Sum_probs=41.3
Q ss_pred HHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 196 KEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
..|..++ .+-....++.|.|.+|+||||||..++...... -..++|+. -......+...++...
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSE 252 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHH
Confidence 3444444 222334689999999999999999999886543 23466655 2234556666665443
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.76 E-value=0.015 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|.|.|++|+||||+|+.++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.76 E-value=0.018 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|+|.|++|+||||+|+.++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.75 E-value=0.018 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++|+|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 293
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.74 E-value=0.026 Score=55.64 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 294
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.72 E-value=0.096 Score=55.35 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=24.1
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
.+.|.|.+|+|||+++..+...+.....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999988655443
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.71 E-value=0.016 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998864
No 296
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.70 E-value=0.012 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|+|++|+||||+|+.++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999864
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.69 E-value=0.018 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.7
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999876
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.68 E-value=0.015 Score=53.33 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.68 E-value=0.014 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.++|+|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4588999999999999999998875
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.67 E-value=0.017 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...+++|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987643
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.66 E-value=0.017 Score=53.47 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++|.|+.|+|||||++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 302
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.64 E-value=0.014 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987643
No 303
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.63 E-value=0.014 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
++|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999875
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.62 E-value=0.05 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 305
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.58 E-value=0.022 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..|+|.|++|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 306
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.57 E-value=0.07 Score=53.65 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=41.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
...|...+. +-....++.|.|.+|+||||||..++......-..++|+. -.....++...++...
T Consensus 33 ~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 33 FVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp CHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred ChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 334444442 2233458999999999999999999988655334455554 2345566666665543
No 307
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.56 E-value=0.053 Score=55.08 Aligned_cols=29 Identities=17% Similarity=-0.055 Sum_probs=24.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
-+.++|+|.+|+|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 35889999999999999999998765543
No 308
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.55 E-value=0.021 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 309
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.50 E-value=0.022 Score=54.93 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999998644
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.50 E-value=0.018 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|+|.|++|+||||+|+.++.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999875
No 311
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.49 E-value=0.022 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998864
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.49 E-value=0.022 Score=52.61 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
....+|+|+|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999874
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.48 E-value=0.021 Score=52.20 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=24.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.+++|.|++|+|||||++.++.. ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999752 33445554
No 314
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.034 Score=53.02 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=28.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..++.|.|++|+||||||..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999999877554444566665
No 315
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.47 E-value=0.026 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999864
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.42 E-value=0.022 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.0
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
No 317
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.42 E-value=0.078 Score=55.48 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=24.6
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCce
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGS 240 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (617)
.++|+|.+|+|||||+..+......++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 588999999999999999998866554433
No 318
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.41 E-value=0.023 Score=52.90 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=24.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..+|+|.|++|+||||+|+.++..+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999886543
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.40 E-value=0.034 Score=55.54 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHhhhc--CCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 188 LVGVAWRIKEIESLLCIR--SAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
++|-...+..+...+... .....+|+|.|+.|+|||||++.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355555555555444322 34467999999999999999999887654
No 320
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.39 E-value=0.033 Score=52.45 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=29.2
Q ss_pred hHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 194 RIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..+.+...+. ......|+|+|.+|+|||||+..+......
T Consensus 25 ~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3444555443 235678999999999999999999987433
No 321
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.38 E-value=0.021 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998763
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.35 E-value=0.025 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...|+|.|++|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999865
No 323
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.34 E-value=0.036 Score=51.96 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 190 GVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
+.++..+.+...+. ....+.|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34445555555553 2356799999999999999999999875444
No 324
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.32 E-value=0.032 Score=58.24 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHHhhhc------------CCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 186 KGLVGVAWRIKEIESLLCIR------------SAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..++|.+...+.+...+... ....+-+.++|++|+|||++|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45778777777776555211 11245688999999999999999998754
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.31 E-value=0.021 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...|+|.|++|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999865
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.31 E-value=0.023 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++|+|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998764
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.28 E-value=0.025 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+|+|.|++|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.28 E-value=0.024 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|+|+|++|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.24 E-value=0.026 Score=52.12 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987643
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.24 E-value=0.026 Score=52.63 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...+++|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.21 E-value=0.023 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEeccCCChhhHHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~ 231 (617)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.21 E-value=0.027 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=22.0
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998864
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.20 E-value=0.026 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++|.|++|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999764
No 334
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.12 E-value=0.52 Score=46.02 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=25.3
Q ss_pred chHHHHHHHHhcceEEEEecCCccCChhhHHHHHHHH
Q 037173 58 ISRSLLDTIEASSISIIIFSERYASSRWCLDELLKIL 94 (617)
Q Consensus 58 ~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 94 (617)
....+.+.+++++++|.|+.-.--.+..| .++...+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 44688889999999999998765555544 2444443
No 335
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.02 E-value=0.046 Score=52.72 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.1
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998865
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.01 E-value=0.03 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 337
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.00 E-value=0.035 Score=51.13 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.6
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999875
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.99 E-value=0.029 Score=52.14 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 339
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.97 E-value=0.043 Score=52.23 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=31.7
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh------ccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR------CFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (617)
.|..+|..+-..-.++.|.|++|+|||||+..++..... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 344444322223458999999999999999999986322 124566766
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.93 E-value=0.031 Score=57.28 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=59.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHH--HhcCCCCCCHHHHHHHHcCCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSK--LLNDGNARNVESQLNRLARKK 286 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~~~~~~~~~~l~~~L~~k~ 286 (617)
..+++|+|+.|+|||||++.+...+.......+.+..- .. ......- ..+..+ ++. ....-...+...|...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e~~~~~~-~~~v~Q~~~g~-~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--EYVFKHK-KSIVNQREVGE-DTKSFADALRAALREDP 210 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--CSCCCCS-SSEEEEEEBTT-TBSCSHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--hhhhccC-ceEEEeeecCC-CHHHHHHHHHHHhhhCc
Confidence 46899999999999999999998765443344433210 00 0000000 000000 000 01111256667777788
Q ss_pred eEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCc
Q 037173 287 VLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDK 323 (617)
Q Consensus 287 ~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 323 (617)
=+|++|.+.+.+.+....... ..|..|+.|+-..
T Consensus 211 d~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred CEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 899999998776655544332 3466677776654
No 341
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.92 E-value=0.037 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+|+|+|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999998754
No 342
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.91 E-value=0.032 Score=52.66 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.-.+++|+|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998753
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.91 E-value=0.019 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.3
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 344
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.90 E-value=0.059 Score=53.74 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEE
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA 243 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (617)
++.++|+|+|=|||||||.+..++.-+...-..+.-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3578999999999999999999988766543334444
No 345
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.89 E-value=0.024 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987643
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.88 E-value=0.032 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.87 E-value=0.025 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.120 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...|.|.|++|+||||+|+.++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998753
No 348
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.86 E-value=0.026 Score=59.52 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=56.0
Q ss_pred ceEEEEeeccccccc-cccChhhhcCCCCceEEEEecccCccc--cccCCCC--CCCCceEEEecCCCCccc--------
Q 037173 522 AIKGISLDMNKVNRK-IHMDSFAFSKMPKLRFLKFYGFENKCM--VSHLDGV--LFAELRHLEWQQYPLKTL-------- 588 (617)
Q Consensus 522 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~LrvL~l~~~~~~~~--~~lp~~i--~l~~Lr~L~l~~~~i~~L-------- 588 (617)
+++.+.+........ .......+.++++|+.|+|+++.+... ..+...+ ...+|++|++++|.+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 577777765543200 012356778889999999988865311 1122222 345799999999988763
Q ss_pred ccccCCeeEEecCCCCccc
Q 037173 589 NIHAENLVSLKCLSAKLNN 607 (617)
Q Consensus 589 i~~l~~L~~L~l~~t~i~~ 607 (617)
+..+.+|++|+|++|.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHCTTCCEEECCSSBCHH
T ss_pred HhhCCCCCEEECcCCCcch
Confidence 4567899999999988754
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.86 E-value=0.053 Score=53.81 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++|+|++|+|||||+..++...... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999876543 3344444
No 350
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.85 E-value=0.027 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred eEEEEEeccCCChhhHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVF 230 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~ 230 (617)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999643
No 351
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.85 E-value=0.29 Score=51.23 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+..|..++. +-....++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 334444442 2234468999999999999999999998665433455554
No 352
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.84 E-value=0.16 Score=53.00 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=24.5
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.++|+|+|.+|+||||++..++......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999876544
No 353
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.83 E-value=0.032 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...|+|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 354
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.81 E-value=0.11 Score=52.11 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=65.3
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC--CCCCce-EEEecCCCCccc----ccccC
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV--LFAELR-HLEWQQYPLKTL----NIHAE 593 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i--~l~~Lr-~L~l~~~~i~~L----i~~l~ 593 (617)
..++.+.+.... ...++...|..+.+|+.|+|.++ +. .++... .+.+|+ .|.+.+ .++.+ ...+.
T Consensus 226 ~~L~~l~L~~n~---i~~I~~~aF~~~~~L~~l~l~~n-i~---~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 226 PNLVSLDISKTN---ATTIPDFTFAQKKYLLKIKLPHN-LK---TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp TTCCEEECTTBC---CCEECTTTTTTCTTCCEEECCTT-CC---EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred CCCeEEECCCCC---cceecHhhhhCCCCCCEEECCcc-cc---eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence 456666655322 44678889999999999999875 33 677765 888999 999988 88888 44889
Q ss_pred CeeEEecCCCCccccCCc
Q 037173 594 NLVSLKCLSAKLNNFGMM 611 (617)
Q Consensus 594 ~L~~L~l~~t~i~~Lp~~ 611 (617)
+|++|+|.+++|+.++.+
T Consensus 298 ~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TEEEEEECSSCCCEECTT
T ss_pred cCCEEEeCCCccCccchh
Confidence 999999999999988763
No 355
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.79 E-value=0.081 Score=55.06 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...+|.++|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999887654
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.69 E-value=0.099 Score=51.68 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=27.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..+++++|.+|+||||++..++......-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999999999999999988665433344443
No 357
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.69 E-value=0.06 Score=51.44 Aligned_cols=36 Identities=28% Similarity=0.171 Sum_probs=26.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh-hccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS-RCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 244 (617)
-.+++|.|++|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35899999999999999999985432 3334455554
No 358
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.67 E-value=0.048 Score=50.91 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+|.|.|++|+||||+++.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.57 E-value=0.043 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|+|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998864
No 360
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.56 E-value=0.036 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 361
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.55 E-value=0.17 Score=51.23 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh------ccCceEEEE
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR------CFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (617)
.|..+|..+=....++.|+|++|+||||||..++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344455323344579999999999999999999987432 123466776
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.51 E-value=0.04 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+|+|.|+.|+||||+++.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999875
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.47 E-value=0.04 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..|+|.|+.|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.45 E-value=0.042 Score=54.77 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
....+++|.|+.|+|||||++.+.....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4467999999999999999999988654
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.43 E-value=0.043 Score=53.85 Aligned_cols=24 Identities=50% Similarity=0.893 Sum_probs=21.6
Q ss_pred CeEEEEEeccCCChhhHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 366
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.42 E-value=0.078 Score=47.86 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.++++|+|..|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 367
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.068 Score=50.99 Aligned_cols=36 Identities=28% Similarity=0.163 Sum_probs=26.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh-hhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI-SRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~ 244 (617)
..++.|.|.+|+|||+||.+++... ...-..++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4589999999999999999987663 33334455554
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.38 E-value=0.049 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 369
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.38 E-value=0.1 Score=52.26 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=27.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc------cCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC------FEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 244 (617)
..++.|+|++|+|||+||..++...... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4589999999999999999999874322 23467766
No 370
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.38 E-value=0.033 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998753
No 371
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.38 E-value=0.04 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++|.|+.|+|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.37 E-value=0.08 Score=52.49 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++|+|+.|+||||++..++...... ...+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 35799999999999999999999876543 3344443
No 373
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.36 E-value=0.072 Score=51.40 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 195 IKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..-+..|+....+....+.|+|++|.|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466677533233457999999999999999999985
No 374
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.34 E-value=0.13 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988653
No 375
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.33 E-value=0.088 Score=50.99 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=59.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEech--hhhccCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVR--EAEETGRIKDLQKELLSKLLNDGNARNV-ESQLNRLAR 284 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~l~~~L~~ 284 (617)
...+++|+|+.|+|||||++.+...+...+...+++.... ...+... . +..+..-......+ ..+...|..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~----~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--S----IVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--S----EEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--e----eeeHHHhCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999887654434555443210 0000000 0 00000000000122 445556666
Q ss_pred CCeEEEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 285 KKVLLVFDDVNHPGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 285 k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
.+=+|++|...+.+....+.... ..|..|++||-...
T Consensus 98 ~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 98 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 77899999997666554444332 24667888887654
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.33 E-value=0.047 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|+|.|+.|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999874
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.27 E-value=0.047 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
+|+|.|+.|+||||+|+.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998865
No 378
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.25 E-value=0.16 Score=53.08 Aligned_cols=52 Identities=31% Similarity=0.422 Sum_probs=33.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELLS 264 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (617)
+-++|.|.+|+|||+|+..+++..... -+.++++- +++ ......++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCC--cchHHHHHHHHhhh
Confidence 478999999999999999999986433 23344433 221 22345556666554
No 379
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.25 E-value=0.74 Score=48.38 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=28.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhcc-CceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCF-EGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~ 244 (617)
...++.|.|.+|+||||||..++....... ..++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345899999999999999999998865432 3466655
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.23 E-value=0.048 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=22.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+|+|.|++|+||||+|+.++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 381
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.23 E-value=0.034 Score=54.86 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=20.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998654
No 382
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.23 E-value=0.055 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+++|.|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999865
No 383
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.22 E-value=0.14 Score=51.78 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=25.2
Q ss_pred CCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 206 SAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..+..+++|+|.+|+|||||+..+......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999876544
No 384
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.21 E-value=0.15 Score=47.61 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.4
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987654
No 385
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.21 E-value=0.036 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=22.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 386
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.19 E-value=0.11 Score=48.64 Aligned_cols=35 Identities=14% Similarity=-0.060 Sum_probs=25.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
-.|.+.|.||+||||+|..++......-..+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34778999999999999999988655433343333
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.17 E-value=0.044 Score=51.62 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
..+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999988654
No 388
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.17 E-value=0.051 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
++|.|+|+.|+||||||..++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999864
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.16 E-value=0.051 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999865
No 390
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.16 E-value=0.045 Score=60.09 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=38.5
Q ss_pred cCCCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 184 ENKGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 184 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3456899998888888777533 3789999999999999999998653
No 391
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.15 E-value=0.11 Score=49.07 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.5
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998654
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.13 E-value=0.05 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEeccCCChhhHHHHHHHHHh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998865
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.11 E-value=0.052 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..|.|.|++|+||||+|+.+++++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999875
No 394
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.06 E-value=0.063 Score=52.93 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..++++|.|+.|+||||||..++.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999763
No 395
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=93.03 E-value=0.028 Score=57.68 Aligned_cols=86 Identities=10% Similarity=-0.037 Sum_probs=53.6
Q ss_pred CceEEEEeecccccc-ccccChhhhcCCCCceEEEEecccCccc--cccCCCC-CCCCceEEEecCCCCccc--------
Q 037173 521 EAIKGISLDMNKVNR-KIHMDSFAFSKMPKLRFLKFYGFENKCM--VSHLDGV-LFAELRHLEWQQYPLKTL-------- 588 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~LrvL~l~~~~~~~~--~~lp~~i-~l~~Lr~L~l~~~~i~~L-------- 588 (617)
..++.+.+..+.... ........+..+++|++|+|++|.+... ..++..+ .+.+|+.|+|++|.|...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 346666665443320 0111233456788888888888865421 1344455 566888888888888754
Q ss_pred ccccCCeeEEecCCCCcc
Q 037173 589 NIHAENLVSLKCLSAKLN 606 (617)
Q Consensus 589 i~~l~~L~~L~l~~t~i~ 606 (617)
+....+|++|||++|.|.
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 335578888888888775
No 396
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.95 E-value=0.089 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..+++|+|++|+||||++..++.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999988653
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.93 E-value=0.091 Score=51.84 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=27.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC-ceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE-GSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~ 244 (617)
-.+++|.|++|+|||||+..++......-. .++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999987654433 355554
No 398
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.93 E-value=0.064 Score=52.03 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=52.8
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-----------c
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-----------L 588 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-----------L 588 (617)
+.++.+.+...... ...-.+..+.++++|+.|+|+++.+.....+ ..+ .+ +|+.|+|+++++.. +
T Consensus 170 ~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCchhh-hhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 34666766655433 1112235678999999999999987633222 222 34 99999999999874 1
Q ss_pred ccccCCeeEEec
Q 037173 589 NIHAENLVSLKC 600 (617)
Q Consensus 589 i~~l~~L~~L~l 600 (617)
+..+.+|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 668899999985
No 399
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.92 E-value=0.04 Score=60.16 Aligned_cols=87 Identities=9% Similarity=-0.010 Sum_probs=54.9
Q ss_pred CCceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCccc-----ccccC
Q 037173 520 TEAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKTL-----NIHAE 593 (617)
Q Consensus 520 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~L-----i~~l~ 593 (617)
.++++.+.+..+...-...........+++|+.|+|.++.+. ...++..+ .+.+|++|++++|++..- ...+.
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 455777776542211011111223345788999999887654 12334334 678899999999987543 45788
Q ss_pred CeeEEecCCCCccc
Q 037173 594 NLVSLKCLSAKLNN 607 (617)
Q Consensus 594 ~L~~L~l~~t~i~~ 607 (617)
+|++|+|++|+++.
T Consensus 514 ~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 514 SLRYLWVQGYRASM 527 (592)
T ss_dssp SCCEEEEESCBCCT
T ss_pred ccCeeECcCCcCCH
Confidence 99999999988653
No 400
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.89 E-value=0.17 Score=46.97 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=54.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHcCC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNA---RNVESQLNRLARK 285 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~~l~~~L~~k 285 (617)
..+..++|.-|.||||.+...+.+...+-..++.+.... ........ +.+.++..-.. .....+.+.+.++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~~----i~s~~g~~~~a~~~~~~~~~~~~~~~~ 101 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEED----VVSHNGLKVKAVPVSASKDIFKHITEE 101 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSGGGGGGGCCSS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHHH----HHhhcCCeeEEeecCCHHHHHHHHhcC
Confidence 468889999999999999999988665544444443111 11112222 22322211110 0112233333333
Q ss_pred CeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCCcc
Q 037173 286 KVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRDKQ 324 (617)
Q Consensus 286 ~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 324 (617)
--+|++|.+. +.++++.+.. +. ..|..||+|.++.+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~-l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQV-LA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHH-HH--HTTCEEEEEECSBC
T ss_pred CCEEEEECcccCCHHHHHHHHH-Hh--hCCCEEEEEecccc
Confidence 3499999984 3445544433 22 24778999998543
No 401
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.86 E-value=0.15 Score=62.54 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 197 EIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 197 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|..+|. .+=...+.+.|+|++|+|||+||.+++.....+-..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3445553 12234568999999999999999999988666545567766
No 402
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=92.85 E-value=0.061 Score=48.48 Aligned_cols=57 Identities=5% Similarity=0.063 Sum_probs=42.6
Q ss_pred CCceEEEEecccCccccccCCCC-CCCCceEEEecCCC-Cccc----cccc----CCeeEEecCCC-Ccc
Q 037173 548 PKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYP-LKTL----NIHA----ENLVSLKCLSA-KLN 606 (617)
Q Consensus 548 ~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~-i~~L----i~~l----~~L~~L~l~~t-~i~ 606 (617)
..|+.||+++|.+.. .-+ ..+ .+.+|+.|+|++|. |..- +..+ .+|++|||++| +|+
T Consensus 61 ~~L~~LDLs~~~Itd-~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-IGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCG-GGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccH-HHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 479999999997642 112 234 78899999999997 7665 5554 37999999988 464
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.83 E-value=0.041 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.3
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.++|+|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999763
No 404
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.81 E-value=0.04 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999887554
No 405
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.81 E-value=0.26 Score=53.43 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=53.5
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHc------
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARNVESQLNRLA------ 283 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~~L~------ 283 (617)
+++.|+|.+|.||||++..+.......-.. +.+.. ... .....+...+... ..++..+.....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~-Vl~~A----pT~----~Aa~~L~e~~~~~--a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLE-VGLCA----PTG----KAARRLGEVTGRT--ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EEEEE----SSH----HHHHHHHHHHTSC--EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCe-EEEec----CcH----HHHHHhHhhhccc--HHHHHHHHcCCcchhhhh
Confidence 588899999999999999999876554333 33331 111 1111222222111 012222111000
Q ss_pred ----CCCeEEEEeCCC--CHHhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 284 ----RKKVLLVFDDVN--HPGQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 284 ----~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
.+.-+||+|.+. +...+..+...++ .+.++|+.--.
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 022489999994 4566777766654 56777776443
No 406
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.78 E-value=0.11 Score=50.02 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998766
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.78 E-value=0.11 Score=52.82 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++|+|+.|+||||++..++..+... ...+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 35799999999999999999999876543 3344443
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.77 E-value=0.061 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
++|+|.|+.|+||||||..++.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998753
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.74 E-value=0.049 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
+.|.|.|++|+||||||.+++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999876
No 410
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.68 E-value=0.2 Score=46.19 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=27.2
Q ss_pred EEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
.|+|-|..|+||||.++.+++.+......+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788999999999999999998776654455444
No 411
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.68 E-value=0.77 Score=48.95 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=37.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEEEechhhhccCCHHHHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFALDVREAEETGRIKDLQKELLSKL 266 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 266 (617)
...++.|.|.+|+||||||..++...... -..++|+. -.....++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHH
Confidence 34588999999999999999999886654 33566665 2334556666655443
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.67 E-value=0.038 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=15.9
Q ss_pred EEEEEeccCCChhhHHHHHHH-HHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVF-NKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~-~~~ 233 (617)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 653
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.67 E-value=0.066 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 414
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.63 E-value=0.062 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.5
Q ss_pred EEEEeccCCChhhHHHHHHHHHhh
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988754
No 415
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.57 E-value=0.24 Score=50.24 Aligned_cols=29 Identities=28% Similarity=0.054 Sum_probs=24.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhcc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCF 237 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (617)
-+-++|.|.+|+|||+|+..+++.+....
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34789999999999999999999865433
No 416
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.57 E-value=0.17 Score=53.75 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=24.3
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..++|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999886654
No 417
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.56 E-value=0.16 Score=47.89 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=21.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999987654
No 418
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.52 E-value=0.11 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999753
No 419
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.49 E-value=0.073 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 420
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.46 E-value=0.2 Score=52.57 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=34.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh-ccCceEEEEechhhhccCCHHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR-CFEGSYFALDVREAEETGRIKDLQKELLS 264 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (617)
+-++|.|.+|+|||+|+..+++.+.. +-+.++++- +++ ......++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 46899999999999999999998643 335555553 221 23345556666554
No 421
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.43 E-value=0.15 Score=51.20 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=55.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHcCCCeE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLNDGNARN-VESQLNRLARKKVL 288 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~l~~~L~~k~~L 288 (617)
..++|+|+.|.|||||++.+...+.. -...+.+.......... .. .... +.. +.... ...+...|..++=+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~~----~~i~-~~~-ggg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-HK----NYTQ-LFF-GGNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-CS----SEEE-EEC-BTTBCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-ch----hEEE-EEe-CCChhHHHHHHHHhhhCCCE
Confidence 37999999999999999998875432 24455555322111000 00 0000 000 01122 24556667888889
Q ss_pred EEEeCCCCHHhHHHHHcccCCCCCCcEEEEEcCC
Q 037173 289 LVFDDVNHPGQIESLIGCLDELASGSRVIITTRD 322 (617)
Q Consensus 289 lVLDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~ 322 (617)
|++|.+.+.+.++.+. .+. ..+..+|+||..
T Consensus 244 lildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~ 274 (330)
T 2pt7_A 244 IILGELRSSEAYDFYN-VLC--SGHKGTLTTLHA 274 (330)
T ss_dssp EEECCCCSTHHHHHHH-HHH--TTCCCEEEEEEC
T ss_pred EEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcc
Confidence 9999998755544333 332 112235666654
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.36 E-value=0.29 Score=59.22 Aligned_cols=92 Identities=22% Similarity=0.123 Sum_probs=53.5
Q ss_pred HHHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC----
Q 037173 195 IKEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND---- 269 (617)
Q Consensus 195 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---- 269 (617)
..+|..+|. .+=....++.|.|++|+||||||..++......-..++|+. ...... .+. ...++..
T Consensus 717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~Ees~~--ql~---A~~lGvd~~~L 787 (1706)
T 3cmw_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALD--PIY---ARKLGVDIDNL 787 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCC--HHH---HHHTTCCGGGC
T ss_pred cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----ccchHH--HHH---HHHcCCChhhe
Confidence 344444442 11223458999999999999999999998665444566765 222222 111 2223211
Q ss_pred --CCCCCHHHHHHHH-----cCCCeEEEEeCCC
Q 037173 270 --GNARNVESQLNRL-----ARKKVLLVFDDVN 295 (617)
Q Consensus 270 --~~~~~~~~l~~~L-----~~k~~LlVLDdv~ 295 (617)
....+++.+.+.+ ..+.-+||+|.+.
T Consensus 788 ~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 820 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred EEecCCcHHHHHHHHHHHHHccCCCEEEEechh
Confidence 1112444554444 3567799999984
No 423
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.29 E-value=0.15 Score=50.36 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=27.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++|+|.+|+||||++..++...... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35789999999999999999999876654 3344443
No 424
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.25 E-value=0.21 Score=46.97 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.8
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999998765
No 425
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.21 E-value=0.066 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.172 Sum_probs=20.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|.|+.|+|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999998865
No 426
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.16 E-value=0.14 Score=54.04 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=28.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++|+|..|+|||||++.++..+... ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999999876543 3445554
No 427
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.16 E-value=0.15 Score=50.54 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...++|+|+|-||+||||+|..++..+...-..++.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35688999999999999999999998766533344443
No 428
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.09 E-value=0.074 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|.|+.|+|||||.+.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998753
No 429
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.06 E-value=0.21 Score=49.96 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.|..+|..+=....++.|+|.+|+|||+||..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444553222335699999999999999999999763
No 430
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.06 E-value=0.14 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
.++.|+|++|+|||||+..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999976543
No 431
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.06 E-value=0.23 Score=49.95 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
....+++|+|++|+|||||...+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999876543
No 432
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.05 E-value=0.22 Score=46.49 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
..|+|.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999986554
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.03 E-value=0.091 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 434
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.00 E-value=0.16 Score=49.24 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.4
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEE
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA 243 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (617)
++|+|.|-||+||||+|..++..+...-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999999876543334444
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.99 E-value=0.22 Score=47.26 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=27.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc-cCceEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC-FEGSYFA 243 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 243 (617)
...|+|.|+.|+||||+++.++..+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3589999999999999999999986554 3424443
No 436
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.92 E-value=0.068 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||.+.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998874
No 437
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.91 E-value=0.098 Score=49.87 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998753
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.83 E-value=0.068 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.0
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998875
No 439
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.83 E-value=0.14 Score=54.31 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 189 VGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 189 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..|.+-.+.+.+..........+|.+.|++|+||||+|+.++.++..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 33443444444443211223468999999999999999999998753
No 440
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.82 E-value=0.17 Score=49.63 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
.++|+|.|-||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999887654
No 441
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.78 E-value=0.099 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
++|+|.|+.|+||||||..++.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999875
No 442
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.78 E-value=0.11 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 443
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.78 E-value=0.18 Score=50.91 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=29.1
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhh--hccCceEEEE
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKIS--RCFEGSYFAL 244 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 244 (617)
...+++.+.|-||+||||+|..++..+. ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4467999999999999999999998877 4433344443
No 444
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.77 E-value=0.091 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 445
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.76 E-value=0.31 Score=49.30 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=28.7
Q ss_pred cCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEE
Q 037173 205 RSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA 243 (617)
Q Consensus 205 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (617)
+.....++...|-||+||||+|..++......-..+..+
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 60 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV 60 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 334566777889999999999999998876653334433
No 446
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.75 E-value=0.31 Score=50.14 Aligned_cols=48 Identities=23% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCcccchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 186 KGLVGVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 186 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
..++|....+.++.+.+..-...-..|.|.|.+|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 357888888888877665322222345899999999999999888763
No 447
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.71 E-value=0.11 Score=52.64 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=27.1
Q ss_pred HHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 198 IESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 198 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
|..+|..+=..-.++.|+|++|+|||||+..++...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344443222345799999999999999999999875
No 448
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.67 E-value=0.18 Score=54.11 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=25.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
...+|.++|++|.||||+|+.++..+...|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3468999999999999999999988654443
No 449
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.59 E-value=0.027 Score=61.57 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=17.6
Q ss_pred CCCCceEEEecCCCCc-----cc---ccccCCeeEEecCCCCcccc
Q 037173 571 LFAELRHLEWQQYPLK-----TL---NIHAENLVSLKCLSAKLNNF 608 (617)
Q Consensus 571 ~l~~Lr~L~l~~~~i~-----~L---i~~l~~L~~L~l~~t~i~~L 608 (617)
.+.+|++|+++++.+. .+ ..++.+|++|+|.+|.+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 3444555555554443 11 23445555555555544443
No 450
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.56 E-value=0.23 Score=49.65 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=27.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..++...|-||+||||+|..++......-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 567778899999999999999998776644444444
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.56 E-value=0.11 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 452
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.52 E-value=0.16 Score=47.10 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=24.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
+.|+|-|..|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999998765444
No 453
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.51 E-value=0.11 Score=53.69 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHH
Q 037173 197 EIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+.+.|........+++|+|+.|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443334456999999999999999999986
No 454
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.48 E-value=0.081 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|+|+.|+|||||++.++--
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.47 E-value=0.097 Score=48.09 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.9
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 456
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.39 E-value=0.099 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|.|+.|+|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 457
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.13 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=21.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998864
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.35 E-value=0.084 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998875
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.35 E-value=0.081 Score=47.93 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEeccCCChhhHHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 460
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=91.34 E-value=0.072 Score=54.61 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=49.2
Q ss_pred cCCCCceEEEEecccCcc--ccccCCCC-CCCCceEEEecCCCCccc--------ccccCCeeEEecCCCCccc
Q 037173 545 SKMPKLRFLKFYGFENKC--MVSHLDGV-LFAELRHLEWQQYPLKTL--------NIHAENLVSLKCLSAKLNN 607 (617)
Q Consensus 545 ~~~~~LrvL~l~~~~~~~--~~~lp~~i-~l~~Lr~L~l~~~~i~~L--------i~~l~~L~~L~l~~t~i~~ 607 (617)
...+.|+.|+|++|.+.. ...++..+ ...+|++|+|++|.|... +..+.+|++|+|++|+|..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 357889999999997642 12455555 677899999999998763 4567899999999998863
No 461
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.34 E-value=1.5 Score=41.43 Aligned_cols=39 Identities=28% Similarity=0.164 Sum_probs=27.6
Q ss_pred cchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 190 GVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
=|+.+.+.+..++.. + -+.|+|+.|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 355555556555532 1 27789999999999999888764
No 462
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.31 E-value=0.086 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.331 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-.+++|.|+.|+|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998875
No 463
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.28 E-value=0.76 Score=50.71 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=29.7
Q ss_pred hhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 192 AWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
+.+.+.+...|... .+..|+||||.|||+.+.++....... ...+.++
T Consensus 192 ~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~ 239 (646)
T 4b3f_X 192 TSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEE
Confidence 34555666666422 377899999999997666555553322 2345555
No 464
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.21 E-value=0.09 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 465
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.21 E-value=0.1 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||++.++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999886
No 466
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.12 E-value=0.092 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.11 E-value=0.1 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.8
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-.+++|+|+.|+|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 468
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.10 E-value=0.091 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||++.++-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999875
No 469
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.06 E-value=2.2 Score=40.11 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=17.8
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
+.+.|.|+.|+||||+...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4789999999999987665544
No 470
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.04 E-value=0.08 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|+|+.|+|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 471
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.03 E-value=0.63 Score=59.11 Aligned_cols=150 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETGRIKDLQKELLSKLLND--------GNARNVESQLNR 281 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~~~l~~~ 281 (617)
+-|.++|++|+|||++|+.+...... -....+. .+.......++..+-..+... .+..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~-------- 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS-------- 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS--------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eecCCCHHHHHHHHHHHhhhccccCCccccCCC--------
Q ss_pred HcCCCeEEEEeCCCCH--------HhHHHHHcccCCCC------------CCcEEEEEcCCc------cccccc-CcceE
Q 037173 282 LARKKVLLVFDDVNHP--------GQIESLIGCLDELA------------SGSRVIITTRDK------QVLENC-WVNQI 334 (617)
Q Consensus 282 L~~k~~LlVLDdv~~~--------~~~~~l~~~l~~~~------------~gs~IlvTTR~~------~v~~~~-~~~~~ 334 (617)
.+++.++.+||++-+ ...+.+...+...+ .+..+|.++... .+-+.. .-..+
T Consensus 1334 -~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1334 -DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp -SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred -CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Q ss_pred EEeccCChhHHHHHHHHhhhcCCCCChhHHHHHHHHHHHc
Q 037173 335 YRMKELVDVDAHKLFCQCAFRGGHLDASYTEVTRKAIKYA 374 (617)
Q Consensus 335 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~ 374 (617)
+.++..+.++-.++|.....+.-...+.....+..++..+
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 472
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.01 E-value=0.097 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|+|+.|.|||||.+.++--
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 473
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.99 E-value=0.096 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-.+++|.|+.|+|||||++.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999875
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.97 E-value=0.097 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999865
No 475
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.97 E-value=0.24 Score=49.78 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 207 AGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
...+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578889999999999999999988776544445444
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.93 E-value=0.12 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEeccCCChhhHHHHHHHHH
Q 037173 211 VLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 477
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.91 E-value=0.6 Score=45.02 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=22.2
Q ss_pred chHHHHHHHHhcceEEEEecCCccCChhh
Q 037173 58 ISRSLLDTIEASSISIIIFSERYASSRWC 86 (617)
Q Consensus 58 ~~~~i~~~i~~s~~~i~v~s~~y~~s~~c 86 (617)
....+...+.+++++|.|++-.--.+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 44789999999999999998665444444
No 478
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.87 E-value=0.51 Score=58.00 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=39.7
Q ss_pred cccchhhHHHHHHHhh-hcCCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 188 LVGVAWRIKEIESLLC-IRSAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 188 ~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
..+...-...|..+|. .+=....++.|.|++|+||||||.+++......-..++|+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444556666663 22233469999999999999999999998765545677776
No 479
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.87 E-value=0.27 Score=45.14 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=26.2
Q ss_pred EEEEEe-ccCCChhhHHHHHHHHHhhhccCceEEEE
Q 037173 210 YVLGIW-GIGGIGKTTIAGAVFNKISRCFEGSYFAL 244 (617)
Q Consensus 210 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (617)
++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577777 67999999999999998766433444444
No 480
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.85 E-value=0.081 Score=48.23 Aligned_cols=65 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred hhhcCCCCceEEEEecc-cCccc--cccCCCC-CCCCceEEEecCCCCccc--------ccccCCeeEEecCCCCcc
Q 037173 542 FAFSKMPKLRFLKFYGF-ENKCM--VSHLDGV-LFAELRHLEWQQYPLKTL--------NIHAENLVSLKCLSAKLN 606 (617)
Q Consensus 542 ~~~~~~~~LrvL~l~~~-~~~~~--~~lp~~i-~l~~Lr~L~l~~~~i~~L--------i~~l~~L~~L~l~~t~i~ 606 (617)
..+...+.|+.|+|+++ .+... ..+...+ ...+|++|+|++|.|..- +....+|++|+|++|+|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.83 E-value=0.1 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-.+++|.|+.|+|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 482
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.78 E-value=0.21 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
..+++|+|+.|+|||||++.++.....
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999988654
No 483
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.74 E-value=0.1 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|+|+.|+|||||++.++--
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998753
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.73 E-value=0.17 Score=44.58 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999874
No 485
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.71 E-value=0.19 Score=49.74 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.7
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
...+++|+|+.|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34589999999999999999998765
No 486
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=90.70 E-value=0.12 Score=56.23 Aligned_cols=82 Identities=15% Similarity=0.072 Sum_probs=48.1
Q ss_pred CceEEEEeeccccccccccChhhhcCCCCceEEEEecccCccccccCCCC-CCCCceEEEecCCCCcc-----c---ccc
Q 037173 521 EAIKGISLDMNKVNRKIHMDSFAFSKMPKLRFLKFYGFENKCMVSHLDGV-LFAELRHLEWQQYPLKT-----L---NIH 591 (617)
Q Consensus 521 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~lp~~i-~l~~Lr~L~l~~~~i~~-----L---i~~ 591 (617)
+.++.+.+...... ..........+++|+.|+|.+|.......++..+ .+.+|++|++++|.+.. + ...
T Consensus 105 ~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45666666544321 1111122235788888888877322122244444 67788888888887544 2 336
Q ss_pred cCCeeEEecCCCC
Q 037173 592 AENLVSLKCLSAK 604 (617)
Q Consensus 592 l~~L~~L~l~~t~ 604 (617)
+.+|++|+|++|.
T Consensus 183 ~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 183 YTSLVSLNISCLA 195 (594)
T ss_dssp CCCCCEEECTTCC
T ss_pred CCcCcEEEecccC
Confidence 6788888888875
No 487
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.69 E-value=0.23 Score=47.30 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=24.7
Q ss_pred EEEeccCCChhhHHHHHHHHHhhhccCceEEE
Q 037173 212 LGIWGIGGIGKTTIAGAVFNKISRCFEGSYFA 243 (617)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (617)
|+|.|-||+||||+|..++..+...-..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999999876653334444
No 488
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.69 E-value=0.27 Score=49.72 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhh
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISR 235 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (617)
+..+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4679999999999999999999876543
No 489
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.68 E-value=0.11 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKI 233 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (617)
.+++|+|+.|+|||||.+.++--.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999887543
No 490
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.67 E-value=0.11 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChhhHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
-.+++|+|+.|+|||||++.++-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 491
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.65 E-value=0.14 Score=47.47 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.9
Q ss_pred EEEEEeccCCChhhHHHHHHHHHhh
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNKIS 234 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (617)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999864
No 492
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.63 E-value=0.16 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.0
Q ss_pred eEEEEEeccCCChhhHHHHHHHHH
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 493
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.60 E-value=0.15 Score=47.06 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHhhhcCCCeEEEEEeccCCChhhHHHHHHHHH
Q 037173 190 GVAWRIKEIESLLCIRSAGVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 190 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
|+..-.+.+.+... ....--|+|+|.+|+|||||...+...
T Consensus 13 ~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 33434444444332 122346789999999999999988864
No 494
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.58 E-value=0.27 Score=51.05 Aligned_cols=29 Identities=24% Similarity=0.148 Sum_probs=25.2
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHHhhhc
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNKISRC 236 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (617)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999887654
No 495
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.54 E-value=0.12 Score=58.53 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=81.2
Q ss_pred CCCcccchhhHHHHHHHhhhc-----------CCCeEEEEEeccCCChhhHHHHHHHHHhhhccCceEEEEechhhhccC
Q 037173 185 NKGLVGVAWRIKEIESLLCIR-----------SAGVYVLGIWGIGGIGKTTIAGAVFNKISRCFEGSYFALDVREAEETG 253 (617)
Q Consensus 185 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (617)
-..++|.+...+.|.+.+... -...+.+.++|++|+|||+||+.++......|-. +. ........
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l~~~~ 551 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPELLTMW 551 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSSTTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHhhhhh
Confidence 456788888888888776421 1124568899999999999999999986443321 11 11110000
Q ss_pred CHHHHHHHHHHHHhcCCCCC-CHHHHHHHH-cCCCeEEEEeCCCCH----------------HhHHHHHcccCCC--CCC
Q 037173 254 RIKDLQKELLSKLLNDGNAR-NVESQLNRL-ARKKVLLVFDDVNHP----------------GQIESLIGCLDEL--ASG 313 (617)
Q Consensus 254 ~~~~l~~~l~~~l~~~~~~~-~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~g 313 (617)
. +... .+..+.+.. ...+.++++|+++.. ..+..++..+... ..+
T Consensus 552 -------------~--g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 616 (806)
T 1ypw_A 552 -------------F--GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp -------------T--TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------C
T ss_pred -------------c--CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCC
Confidence 0 0000 112222222 235678999998521 1234455554322 233
Q ss_pred cEEEEEcCCccccc-cc----CcceEEEeccCChhHHHHHHHHhh
Q 037173 314 SRVIITTRDKQVLE-NC----WVNQIYRMKELVDVDAHKLFCQCA 353 (617)
Q Consensus 314 s~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 353 (617)
..||.||....... .. .....+.++..+.++-.+++..+.
T Consensus 617 v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred eEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 45566665433221 11 123466777778888888887665
No 496
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.53 E-value=0.14 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999998864
No 497
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.50 E-value=0.11 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEeccCCChhhHHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
.+++|.|+.|+|||||.+.++--
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998754
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.48 E-value=2.9 Score=43.48 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.4
Q ss_pred CeEEEEEeccCCChhhHHHHHHHHH
Q 037173 208 GVYVLGIWGIGGIGKTTIAGAVFNK 232 (617)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (617)
+..-|+|+|.+|+|||||...+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998854
No 499
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.46 E-value=0.11 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEEEeccCCChhhHHHHHHHH
Q 037173 210 YVLGIWGIGGIGKTTIAGAVFN 231 (617)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (617)
.+++|+|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999875
No 500
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.44 E-value=0.26 Score=52.11 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=25.1
Q ss_pred eEEEEEeccCCChhhHHHHHHHHHhhhccC
Q 037173 209 VYVLGIWGIGGIGKTTIAGAVFNKISRCFE 238 (617)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (617)
..+|.++|++|+||||+++.++......|-
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 457899999999999999999988654443
Done!