BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037174
         (301 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
 pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
          Length = 885

 Score =  348 bits (893), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/230 (72%), Positives = 192/230 (83%)

Query: 3   IYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKL 62
           IYAVSITIRIV GF+L+ALIWE+DF  FMVLIIAILNDGTIMTISKDRVKPSP PDSWKL
Sbjct: 647 IYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKL 706

Query: 63  NEIFATGIVIGTYLALVTVLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQ 122
            EIFATG+V+G Y A++TV+FFW    TDFF   F V+S+     E+  AVYLQVSIISQ
Sbjct: 707 KEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQ 766

Query: 123 ALIFVTRSQSWSFLERPGALLMCAFVVAQLVATLIAVYAHISFAYISGVGWGWAGVIWLY 182
           ALIFVTRS+SWSF+ERPGALLM AF++AQL+ATLIAVYA+  FA I G+GWGWAGVIWLY
Sbjct: 767 ALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLY 826

Query: 183 SFIFYIPLDVIKFIVRYALSGEAWNLVFDRKTAFTSKKDYGKEDRAAQWI 232
           S + Y PLDV KF +RY LSG+AW  +F+ KTAFT KKDYGKE+R AQW+
Sbjct: 827 SIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWM 876


>pdb|2O98|P Chain P, Structure Of The 14-3-3  H+-Atpase Plant Complex
 pdb|2O98|Q Chain Q, Structure Of The 14-3-3  H+-Atpase Plant Complex
          Length = 52

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 273 EIHTLRGHVESVVRLKNLDLNVIQAAHTV 301
           E+HTL+GHVESVV+LK LD+  IQ ++ +
Sbjct: 24  ELHTLKGHVESVVKLKGLDIETIQQSYDI 52


>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
 pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
          Length = 920

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 33/206 (16%)

Query: 5   AVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKLNE 64
           A+SI + I LG  +  L    +    +V+ IAI  D   + I+ D    S  P  W L +
Sbjct: 697 ALSIHLEIFLGLWIAILNRSLNIE--LVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPK 754

Query: 65  IFATGIVIGTYLALVTVLFFWVVVDTDFF--ETHFHVKSLSSKTEEVSSAVYLQVSIISQ 122
           ++   +++G  LA+ T    W+ V T +   E    V++  +  E     ++LQ+S+   
Sbjct: 755 LWGMSVLLGVVLAVGT----WITVTTMYAQGENGGIVQNFGNMDE----VLFLQISLTEN 806

Query: 123 ALIFVTRSQS--WSFLERPGALLMCAFVVAQLVATLIAV---YAHISFAYISGVGWGWAG 177
            LIF+TR+    WS +  P   L  A  +  ++AT   +   + H   + ++ V      
Sbjct: 807 WLIFITRANGPFWSSI--PSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVV------ 858

Query: 178 VIWLYSF--------IFYIPLDVIKF 195
            IW++SF        ++YI  D + F
Sbjct: 859 RIWIFSFGIFCIMGGVYYILQDSVGF 884


>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
           EPIBESTAT
 pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
           PYRROLIDO
 pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
           PYRAZOLE Derivative
          Length = 31

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 24/29 (82%)

Query: 273 EIHTLRGHVESVVRLKNLDLNVIQAAHTV 301
           E+HTL+GHVE+VV+LK LD+  IQ ++ +
Sbjct: 3   ELHTLKGHVEAVVKLKGLDIETIQQSYDI 31


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,975,284
Number of Sequences: 62578
Number of extensions: 289644
Number of successful extensions: 758
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 4
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)