Query 037174
Match_columns 301
No_of_seqs 225 out of 807
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0205 Plasma membrane H+-tra 100.0 6.5E-84 1.4E-88 644.8 8.9 294 1-301 649-942 (942)
2 TIGR01647 ATPase-IIIA_H plasma 99.9 1.3E-22 2.8E-27 212.8 13.9 157 1-160 599-755 (755)
3 PRK10517 magnesium-transportin 99.9 4.7E-21 1E-25 204.5 16.8 194 1-201 702-899 (902)
4 TIGR01524 ATPase-IIIB_Mg magne 99.8 1.5E-19 3.2E-24 192.4 16.5 192 1-199 667-862 (867)
5 PRK15122 magnesium-transportin 99.8 5.4E-19 1.2E-23 188.8 16.3 193 1-200 702-898 (903)
6 TIGR01106 ATPase-IIC_X-K sodiu 99.4 2.6E-12 5.5E-17 139.1 17.2 198 1-198 749-984 (997)
7 PF00689 Cation_ATPase_C: Cati 99.3 3.4E-11 7.5E-16 104.5 11.2 166 24-195 1-181 (182)
8 COG0474 MgtA Cation transport 99.2 4.1E-10 8.9E-15 121.2 17.6 182 1-190 704-901 (917)
9 TIGR01517 ATPase-IIB_Ca plasma 99.2 6.5E-10 1.4E-14 119.9 16.1 192 1-196 734-938 (941)
10 TIGR01522 ATPase-IIA2_Ca golgi 99.1 1.2E-09 2.6E-14 117.1 17.5 184 1-196 683-879 (884)
11 TIGR01523 ATPase-IID_K-Na pota 99.1 1.2E-09 2.6E-14 119.1 16.5 195 1-198 811-1046(1053)
12 TIGR01116 ATPase-IIA1_Ca sarco 99.0 4.1E-09 9E-14 113.5 16.3 196 1-196 695-915 (917)
13 KOG0203 Na+/K+ ATPase, alpha s 97.6 5.6E-05 1.2E-09 80.1 3.9 198 2-199 772-1007(1019)
14 KOG0202 Ca2+ transporting ATPa 97.5 0.00011 2.4E-09 77.9 5.5 199 1-200 743-969 (972)
15 TIGR01657 P-ATPase-V P-type AT 95.8 0.13 2.8E-06 57.0 13.1 147 24-175 886-1047(1054)
16 KOG0204 Calcium transporting A 88.9 0.28 6.1E-06 53.1 2.7 156 16-178 820-987 (1034)
17 TIGR01652 ATPase-Plipid phosph 81.8 29 0.00062 38.9 14.0 127 2-135 834-980 (1057)
18 PF13807 GNVR: G-rich domain o 57.5 18 0.0004 27.6 4.1 34 48-81 44-77 (82)
19 TIGR02916 PEP_his_kin putative 50.9 1.5E+02 0.0033 31.1 10.9 52 123-174 208-260 (679)
20 KOG2927 Membrane component of 38.1 64 0.0014 32.1 5.3 32 133-165 181-212 (372)
21 PF03839 Sec62: Translocation 27.7 2.3E+02 0.0049 26.4 6.9 32 133-165 102-133 (224)
22 PF04896 AmoC: Ammonia monooxy 27.1 51 0.0011 31.1 2.5 141 46-194 83-237 (251)
23 COG0598 CorA Mg2+ and Co2+ tra 26.6 1.5E+02 0.0032 28.4 5.7 13 163-175 284-296 (322)
24 TIGR00383 corA magnesium Mg(2+ 26.1 2.1E+02 0.0046 26.8 6.7 12 164-175 281-292 (318)
25 PF11298 DUF3099: Protein of u 23.6 2.8E+02 0.006 21.3 5.6 21 3-24 19-39 (73)
26 PRK09546 zntB zinc transporter 23.0 2.5E+02 0.0053 26.8 6.5 12 164-175 287-298 (324)
27 PF02632 BioY: BioY family; I 20.5 5.5E+02 0.012 22.0 8.4 35 54-88 4-38 (148)
28 COG2211 MelB Na+/melibiose sym 20.3 9.2E+02 0.02 24.8 10.2 91 56-157 5-100 (467)
29 TIGR01006 polys_exp_MPA1 polys 20.0 2.1E+02 0.0045 25.6 5.1 38 49-86 161-198 (226)
No 1
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-84 Score=644.83 Aligned_cols=294 Identities=70% Similarity=1.165 Sum_probs=289.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcceeeecccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFATGIVIGTYLALVT 80 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~~f~~~p~~ILlialLnD~~~mtIa~DrV~pS~~P~~W~l~~I~~~~~vlG~~~av~t 80 (301)
|++|++|.|+|++++|++++++|+|+++|+|+++++++||+++|+||+|||+|||+|++|++++|+.+++++|.|+++++
T Consensus 649 ytiyavsitiriv~gfml~alIw~~df~pfmvliiailnd~t~mtis~d~v~psp~pdswkl~~ifatgvVlgtyma~~t 728 (942)
T KOG0205|consen 649 YTIYAVSITIRIVFGFMLIALIWEFDFSPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGTYMAIMT 728 (942)
T ss_pred heeeeehhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCceEEEEcccCCCCCCCcccchhhhheeeeEehhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCCCCcccCCcHHHHHHHHHHHHHHHHHhhh
Q 037174 81 VLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQSWSFLERPGALLMCAFVVAQLVATLIAVY 160 (301)
Q Consensus 81 v~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~~f~~srPS~~Ll~A~~~a~liatlia~~ 160 (301)
+++||+.+.|+||++.||++++.++..++.+++|||+++++|++||+||+|+|||.+||+++|+.|++.+|+++|+||+|
T Consensus 729 vif~w~~~~t~ff~~~f~v~~~~~~~~~~~~a~ylqvsi~sqaliFvtrsr~w~~~erpg~~L~~af~~aqliatliavy 808 (942)
T KOG0205|consen 729 VIFFWAAYTTDFFPRTFGVRSLFGNEHELMSALYLQVSIISQALIFVTRSRSWSFVERPGWLLLIAFFAAQLIATLIAVY 808 (942)
T ss_pred HHHhhhhccccccccccceeeccCCHHHHHHhhhhhheehhceeeEEEeccCCccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccccccccccCchhhHHhHHHhhhhhcc
Q 037174 161 AHISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVRYALSGEAWNLVFDRKTAFTSKKDYGKEDRAAQWILSHRSLQG 240 (301)
Q Consensus 161 g~~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
++|.+..+++++|+|.+++|+|++++|+++|..|+.+||.++|++|++++++|++|++|||||+|+||+|||.+||++||
T Consensus 809 a~w~~a~i~~igw~w~gviw~ysi~~y~~ld~~kf~~~y~lsg~a~~~~~~~k~~~~~kk~~~~~~~~a~~~~~qrt~~~ 888 (942)
T KOG0205|consen 809 ANWSFARITGIGWGWAGVIWLYSIVFYIPLDILKFIIRYALSGKAWDRLIENKTAFTTKKDYGKEEREAQWALAQRTLHG 888 (942)
T ss_pred heecccceecceeeeeeeEEEEEEEEEEechhhheehhhhhhhhHHHHHhcCcchhhhccccchhhhhhHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCccchHHHHHhcchhhhhhhhcccccchhhhhhhhcCCChhhhhccccC
Q 037174 241 LVGTDLEFNGRKSRSSLIAEQARRRAEIARLGEIHTLRGHVESVVRLKNLDLNVIQAAHTV 301 (301)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
+|++++ +|+|++|||+|||||+|||||+||||||||||+|+||+|+|++ |||||
T Consensus 889 lq~~~~------~~~~~~a~~~~~~ae~~r~~e~~~l~g~vesv~klk~~d~~~~-~~~t~ 942 (942)
T KOG0205|consen 889 LQPPEG------RELSEIAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETI-QHYTV 942 (942)
T ss_pred cCCCcc------chhhHHHHHHhhhhhhhhccchhhhhhhhHhhhhhcccchhhh-hhccC
Confidence 999962 5999999999999999999999999999999999999999999 99997
No 2
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.88 E-value=1.3e-22 Score=212.84 Aligned_cols=157 Identities=52% Similarity=0.833 Sum_probs=136.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcceeeecccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFATGIVIGTYLALVT 80 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~~f~~~p~~ILlialLnD~~~mtIa~DrV~pS~~P~~W~l~~I~~~~~vlG~~~av~t 80 (301)
|+.|+++.|+++++.+.+..+++++|++|+|+|+++++||++++++++|+++|+++|++|++++++.+++++|+++++.+
T Consensus 599 ~i~~~~~~n~~~~~~~~~~~l~~~~~l~~~~il~~~l~~d~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 678 (755)
T TIGR01647 599 YVIYRIAETIRIVFFFGLLILILNFYFPPIMVVIIAILNDGTIMTIAYDNVKPSKLPQRWNLREVFTMSTVLGIYLVIST 678 (755)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCcchhHHHHHHHHHHHhHhHhhccCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 56799999999998666666567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCCCCcccCCcHHHHHHHHHHHHHHHHHhhh
Q 037174 81 VLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQSWSFLERPGALLMCAFVVAQLVATLIAVY 160 (301)
Q Consensus 81 v~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~~f~~srPS~~Ll~A~~~a~liatlia~~ 160 (301)
+++||+.....|+...++. +.+.+++||+||++++++|++.+|+.||++.+|+++||++|++++++++++++++++|
T Consensus 679 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~t~~f~~~~~~~~~~~~~~r~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~ 755 (755)
T TIGR01647 679 FLLLAIALDTSFFIDKFGL---QLLHGNLQSLIYLQVSISGQATIFVTRTHGFFWSERPGKLLFIAFVIAQIIATFIAVY 755 (755)
T ss_pred HHHHHHHHhcccchhcccc---cccHhhhHHHHHHHHHHHHHHHHheeccCCCCcccCCcHHHHHHHHHHHHHHHHHhhC
Confidence 9988877643332211211 1235689999999999999999999999999999999999999999999999999864
No 3
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.86 E-value=4.7e-21 Score=204.48 Aligned_cols=194 Identities=13% Similarity=0.161 Sum_probs=163.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHhhcceeeecccCCCCC--CCCCCCCcchhhHHHHHHHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIWE-YDFPPFMVLIIAILNDGTIMTISKDRVKPS--PRPDSWKLNEIFATGIVIGTYLA 77 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~~-f~~~p~~ILlialLnD~~~mtIa~DrV~pS--~~P~~W~l~~I~~~~~vlG~~~a 77 (301)
|+.|.+++|++.++++++.+++++ +|++|.|++++|+++|++++++++|+++++ ++|.+|+.+++.++++.+|++++
T Consensus 702 ~i~~~ls~n~~~v~~~~~~~~~~~~~pl~~~qiL~inl~~D~~~~al~~d~~~~~~m~~p~r~~~~~~~~~~~~~g~~~~ 781 (902)
T PRK10517 702 YIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVSQVAIPFDNVDDEQIQKPQRWNPADLGRFMVFFGPISS 781 (902)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHhhcCCCCChhhhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999997766666666 699999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCC-CCcccCCcHHHHHHHHHHHHHHHH
Q 037174 78 LVTVLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLERPGALLMCAFVVAQLVATL 156 (301)
Q Consensus 78 v~tv~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~srPS~~Ll~A~~~a~liatl 156 (301)
+++++.|+++.. .+|... ......+|++||+.+.+++.+.+|..||++ +||+++|++.+++++++.+++++.
T Consensus 782 ~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~F~~~~~~q~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (902)
T PRK10517 782 IFDILTFCLMWW------VFHANT-PETQTLFQSGWFVVGLLSQTLIVHMIRTRRIPFIQSRAAWPLMIMTLIVMAVGIA 854 (902)
T ss_pred HHHHHHHHHHHH------Hccccc-hhhHhHHHHHHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 999988887642 122110 011246889999999999999999999987 999999999999999999999999
Q ss_pred HhhhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037174 157 IAVYAHISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVRYAL 201 (301)
Q Consensus 157 ia~~g~~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~~~~ 201 (301)
+++.+..+.+++.++|+.+..+.+++.+.+.++.++.|..+....
T Consensus 855 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~K~~~~~~~ 899 (902)
T PRK10517 855 LPFSPLASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRY 899 (902)
T ss_pred hhHHHHHHhhCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 996555567789999987777777777888888899998754433
No 4
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.82 E-value=1.5e-19 Score=192.41 Aligned_cols=192 Identities=11% Similarity=0.136 Sum_probs=158.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHhhcceeeecccCCCCC--CCCCCCCcchhhHHHHHHHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIWE-YDFPPFMVLIIAILNDGTIMTISKDRVKPS--PRPDSWKLNEIFATGIVIGTYLA 77 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~~-f~~~p~~ILlialLnD~~~mtIa~DrV~pS--~~P~~W~l~~I~~~~~vlG~~~a 77 (301)
|+.|.++.|+++++.+++.+++++ +|++|+|++++|+++|++.|++++|+++++ ++|.+|+.+.+.+.+..+|++++
T Consensus 667 ~i~~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~inl~~d~~~~al~~~~~~~~~m~~p~~~~~~~~~~~~~~~g~~~~ 746 (867)
T TIGR01524 667 YLKMTASSNFGNVFSVLVASAFIPFLPMLSLHLLIQNLLYDFSQLTLPWDKMDREFLKKPHQWEQKGMGRFMLCIGPVSS 746 (867)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcCCCCChHhhCCCCCCChhhHHHHHHHHHHHHH
Confidence 567899999999996666666555 799999999999999999999999999988 58888999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCC-CCcccCCcHHHHHHHHHHHHHHHH
Q 037174 78 LVTVLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLERPGALLMCAFVVAQLVATL 156 (301)
Q Consensus 78 v~tv~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~srPS~~Ll~A~~~a~liatl 156 (301)
+++++.|+++.. .++... .....++||++|+.+++++.+.+|..|+++ +||+++|++.+++++++.+++++.
T Consensus 747 ~~~~~~~~~~~~------~~~~~~-~~~~~~~~t~~f~~~~~~~~~~~~~~R~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 819 (867)
T TIGR01524 747 IFDIATFLLMWF------VFSANT-VEEQALFQSGWFVVGLLSQTLVVHMIRTEKIPFIQSRAAAPVMIATLLVMALGII 819 (867)
T ss_pred HHHHHHHHHHHH------Hhcccc-hhhhhHHHHHHHHHHHHHHHHHHHhhCcCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence 999888877542 111110 011345899999999999999999999987 999999999999999999999999
Q ss_pred HhhhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037174 157 IAVYAHISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVRY 199 (301)
Q Consensus 157 ia~~g~~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~~ 199 (301)
+++.+....+++.++|+.+..+++.+.+.+.++.++.|..++.
T Consensus 820 ~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~e~~k~~~~~ 862 (867)
T TIGR01524 820 IPFSPLGHSIGLVSLPLSYFPWLIAILVGYMATMQLVKTFYIR 862 (867)
T ss_pred hchhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875433456889998887777777777777778999986443
No 5
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.80 E-value=5.4e-19 Score=188.78 Aligned_cols=193 Identities=10% Similarity=0.111 Sum_probs=161.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHhhcceeeecccCCCCC--CCCCCCCcchhhHHHHHHHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIWE-YDFPPFMVLIIAILNDGTIMTISKDRVKPS--PRPDSWKLNEIFATGIVIGTYLA 77 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~~-f~~~p~~ILlialLnD~~~mtIa~DrV~pS--~~P~~W~l~~I~~~~~vlG~~~a 77 (301)
|+.|.++.|+++++.+++.+++++ +|++|.|+|++|+++|++.+++++|+++++ ++|++|+.+.+-+.+..+|++++
T Consensus 702 ~i~~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~~nli~D~~~lal~~d~~~~~~m~~P~~~~~~~~~~~~~~~g~~~~ 781 (903)
T PRK15122 702 YLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLLQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSS 781 (903)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhcCCCCCHhhcCCCCCCChhhhHHHHHHHHHHHH
Confidence 578899999999996666555554 799999999999999999999999999987 49999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCC-CCcccCCcHHHHHHHHHHHHHHHH
Q 037174 78 LVTVLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLERPGALLMCAFVVAQLVATL 156 (301)
Q Consensus 78 v~tv~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~srPS~~Ll~A~~~a~liatl 156 (301)
+++++.|++... .++.... .....+||++|+.++++|.+.+|..||++ ++|+++|++..++++++.+++.+.
T Consensus 782 ~~~~~~~~~~~~------~~~~~~~-~~~~~~~t~~f~~l~~~q~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (903)
T PRK15122 782 IFDITTFALMWF------VFAANSV-EMQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSTAALPVLLTTGLIMAIGIY 854 (903)
T ss_pred HHHHHHHHHHHH------HhccCcH-hhhhhhHHHHHHHHHHHHHHHHHhhCcCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence 999988877542 1111100 01135789999999999999999999987 899999999999999999999999
Q ss_pred HhhhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037174 157 IAVYAHISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVRYA 200 (301)
Q Consensus 157 ia~~g~~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~~~ 200 (301)
+++.+....+++.++|+..++++.++.++++++.++.|..++..
T Consensus 855 ~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~e~~k~~~~r~ 898 (903)
T PRK15122 855 IPFSPLGAMVGLEPLPWSYFPWLAATLLGYCLVAQGMKRFYIRR 898 (903)
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 98744345678999999999999999999999999999765443
No 6
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.44 E-value=2.6e-12 Score=139.09 Aligned_cols=198 Identities=13% Similarity=0.243 Sum_probs=141.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHhhc-ceeeecccCCCCC---CCCCCCCcchhh------HHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW-EYDFPPFMVLIIAILNDG-TIMTISKDRVKPS---PRPDSWKLNEIF------ATG 69 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~-~f~~~p~~ILlialLnD~-~~mtIa~DrV~pS---~~P~~W~l~~I~------~~~ 69 (301)
|+.|.++.|+..++.+++.+++. +.|++|+|++++|+++|. +.+++++|++++. ++|.+|+-++++ ...
T Consensus 749 ~i~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qlL~inli~d~lp~~al~~e~~~~~~m~~~P~~~~~~~l~~~~~~~~~~ 828 (997)
T TIGR01106 749 SIAYTLTSNIPEITPFLIFIIANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAY 828 (997)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCcCCccccccCHHHHHHHH
Confidence 46789999999988444444332 468899999999999996 8999999999986 688888766555 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-ccccc-cccc---------cccCCc-------------cchhhHHHHHHHHhhhhhee
Q 037174 70 IVIGTYLALVTVLFFWVVVDT-DFFET-HFHV---------KSLSSK-------------TEEVSSAVYLQVSIISQALI 125 (301)
Q Consensus 70 ~vlG~~~av~tv~~f~i~~~t-~ff~~-~~~~---------~~~~~~-------------~~~lqt~~FL~v~it~q~lI 125 (301)
+..|++.++..+++|++...- .|... .+++ .+.... ..+.||++|..++++|.+.+
T Consensus 829 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~v~~q~~~~ 908 (997)
T TIGR01106 829 GQIGMIQALGGFFTYFVILAENGFLPLHLVGLRVQWDDRWINDLEDSYGQEWTYEQRKYVEFTCHTAFFVSIVVVQWADL 908 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccccccccccccccccchhcccchhhhhhHHHHHHHHHHHHHHH
Confidence 456888888888776654311 01000 0111 000000 01579999999999999999
Q ss_pred eeeeeCC-CCc-ccCCcHHHHHHHHHHHHHHHHHhhhhh-cccccccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037174 126 FVTRSQS-WSF-LERPGALLMCAFVVAQLVATLIAVYAH-ISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVR 198 (301)
Q Consensus 126 fvtRtr~-~f~-~srPS~~Ll~A~~~a~liatlia~~g~-~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~ 198 (301)
|..|+++ ++| .+++.+.++.++++..++..++.+.+. ...+++.++++.+++++.++++++++...+.|...|
T Consensus 909 ~~~R~~~~~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~~r 984 (997)
T TIGR01106 909 IICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIR 984 (997)
T ss_pred HHhccCcccccccCCcCHHHHHHHHHHHHHHHHHHHhhhhHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 444 457888899999888888888877763 456788999999888888888877555455554433
No 7
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=99.27 E-value=3.4e-11 Score=104.55 Aligned_cols=166 Identities=12% Similarity=0.144 Sum_probs=120.8
Q ss_pred hcCCCHHHHHHHHHHhhcc-eeeecccCCCCC---CCCCCCC----cchhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 037174 24 EYDFPPFMVLIIAILNDGT-IMTISKDRVKPS---PRPDSWK----LNEIFATGIVIGTYLALVTVLFFWVVVDTDFFET 95 (301)
Q Consensus 24 ~f~~~p~~ILlialLnD~~-~mtIa~DrV~pS---~~P~~W~----l~~I~~~~~vlG~~~av~tv~~f~i~~~t~ff~~ 95 (301)
+.|++|.|+|.+|++.|.. .++++.|+.++. ++|.+-| -++++...+..|++.++.+++.|.....
T Consensus 1 P~Pl~~~qiL~inli~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~------ 74 (182)
T PF00689_consen 1 PLPLTPIQILWINLITDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLY------ 74 (182)
T ss_dssp S-SS-HHHHHHHHHTTTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHH------
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhh------
Confidence 4689999999999999977 899999999986 5666554 2335666689999999999988877663
Q ss_pred ccccccc--CCccchhhHHHHHHHHhhhhheeeeeeeCC-CCcc-c--CCcHHHHHHHHHHHHHHHHHhhhhh-cccccc
Q 037174 96 HFHVKSL--SSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFL-E--RPGALLMCAFVVAQLVATLIAVYAH-ISFAYI 168 (301)
Q Consensus 96 ~~~~~~~--~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~-s--rPS~~Ll~A~~~a~liatlia~~g~-~~~~~~ 168 (301)
.+|.+.. +.+..+-||++|..+++++-+..+..|+++ ..|+ . +.++.++.+.++..++..++.+.+. ...+++
T Consensus 75 ~~~~~~~~~~~~~~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~ 154 (182)
T PF00689_consen 75 IFGWDEETNNDNLAQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGT 154 (182)
T ss_dssp STCSSSHHHTTCHHHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST-
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcc
Confidence 2332210 112345899999999999999999999954 4554 2 3578888888888888777777753 345688
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHH
Q 037174 169 SGVGWGWAGVIWLYSFIFYIPLDVIKF 195 (301)
Q Consensus 169 ~~i~w~~~~~iwl~~iv~~l~lD~vK~ 195 (301)
.++++..+++..+.+++.++..++.|.
T Consensus 155 ~~l~~~~w~~~l~~~~~~~~~~ei~K~ 181 (182)
T PF00689_consen 155 APLPLWQWLICLALALLPFIVDEIRKL 181 (182)
T ss_dssp ---THHHHHCHHHHHCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888889999999988888886
No 8
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.21 E-value=4.1e-10 Score=121.21 Aligned_cols=182 Identities=19% Similarity=0.311 Sum_probs=136.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH-h-cCCCHHHHHHHHHHhhcc---eeeec---ccCCCCC-CCCCC--CCcchhhHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW-E-YDFPPFMVLIIAILNDGT---IMTIS---KDRVKPS-PRPDS--WKLNEIFATG 69 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~-~-f~~~p~~ILlialLnD~~---~mtIa---~DrV~pS-~~P~~--W~l~~I~~~~ 69 (301)
|+.|.++.|++.++.+++..++. + +|+.|.|++++|+++|+. .+++. .|+++.. .+|++ |+.+.+..++
T Consensus 704 ~i~~~l~~n~~~~~~~~~~~~~~~~~~p~~~~qll~inll~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i 783 (917)
T COG0474 704 FILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFI 783 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhhhheeecCCCcccccccCCCCccccccchhHHHHHH
Confidence 56789999999777455555543 4 689999999999999998 77777 7778765 67888 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCC--ccchhhHHHHHHHHhhhhheeeeeeeCCCCcccC---CcHHHH
Q 037174 70 IVIGTYLALVTVLFFWVVVDTDFFETHFHVKSLSS--KTEEVSSAVYLQVSIISQALIFVTRSQSWSFLER---PGALLM 144 (301)
Q Consensus 70 ~vlG~~~av~tv~~f~i~~~t~ff~~~~~~~~~~~--~~~~lqt~~FL~v~it~q~lIfvtRtr~~f~~sr---PS~~Ll 144 (301)
+..|..+++.+++.|.+.... +....... .....+|.+|..+++++++..|.+|+++.+|.+. +++.+.
T Consensus 784 ~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 857 (917)
T COG0474 784 LIIGLLSAILFILTFLLYLLG------FIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLW 857 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHH
Confidence 999999999999888887631 11000001 1567999999999999999999999997555444 899999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccChhHHHHHHHHHHHHHHHH
Q 037174 145 CAFVVAQLVATLIAVYAHISFAYISGVGWGWAGVIWLYSFIFYIPL 190 (301)
Q Consensus 145 ~A~~~a~liatlia~~g~~~~~~~~~i~w~~~~~iwl~~iv~~l~l 190 (301)
++.++..++..+..+++......+.+.+.. ..-|++.+.+..+.
T Consensus 858 ~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~--~~~~~~~~~~~~~~ 901 (917)
T COG0474 858 LALLVIIILQLLIIFLPPLNLKIFQPTPLS--LFEWLIAIAVALLL 901 (917)
T ss_pred HHHHHHHHHHHHHHHhHHhHhhhccCCCCc--HHHHHHHHHHHHHH
Confidence 999999999888888775442234444444 44466555555433
No 9
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.15 E-value=6.5e-10 Score=119.88 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=127.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHhh-cceeeecccCCCCC---CCCCCCCcchhhH----HHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW-EYDFPPFMVLIIAILND-GTIMTISKDRVKPS---PRPDSWKLNEIFA----TGIV 71 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~-~f~~~p~~ILlialLnD-~~~mtIa~DrV~pS---~~P~~W~l~~I~~----~~~v 71 (301)
|+.|.++.|+..++..++..++. +.|++|+|++++|+++| ++.+++++|+.++. ++|.+|+.+-+-+ -.+.
T Consensus 734 ~i~~~l~~n~~~i~~~~~~~~~~~~~pl~~~qil~inl~~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~ 813 (941)
T TIGR01517 734 FLQFQLTVNVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILG 813 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHH
Confidence 35678888887777444433443 57999999999999999 58999999999986 6899998665533 3666
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccc-CCccchhhHHHHHHHHhhhhheeeeeeeCC--CCcccCC-cHHHHHHH
Q 037174 72 IGTYLALVTVLFFWVVVDTDFFETHFHVKSL-SSKTEEVSSAVYLQVSIISQALIFVTRSQS--WSFLERP-GALLMCAF 147 (301)
Q Consensus 72 lG~~~av~tv~~f~i~~~t~ff~~~~~~~~~-~~~~~~lqt~~FL~v~it~q~lIfvtRtr~--~f~~srP-S~~Ll~A~ 147 (301)
.|++.++..++.++.+.. ++.. .+.... .....+.||+.|..+++.+.+..|..|+.+ .+|+... .++++.+.
T Consensus 814 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~t~~f~~~v~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~ 890 (941)
T TIGR01517 814 QAGYQLVVTFILLFAGGS--IFDV-SGPDEITSHQQGELNTIVFNTFVLLQLFNEINARKLYERNVFEGLFKNRIFVTIM 890 (941)
T ss_pred HHHHHHHHHHHHHHHHHh--hhcc-cCcccccccccchhhHHHHHHHHHHHHHHHHHHccCCcccccccccccHHHHHHH
Confidence 788877777766665431 1210 010000 012356789999999999999999999965 5665432 34555555
Q ss_pred HHHHHHHHHHhhhhhcccccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 037174 148 VVAQLVATLIAVYAHISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFI 196 (301)
Q Consensus 148 ~~a~liatlia~~g~~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~ 196 (301)
++..++..++. ++....++..+++|..++++.+.+++.++...+.|..
T Consensus 891 ~~~~~l~~~~~-~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~ 938 (941)
T TIGR01517 891 GFTFGFQVIIV-EFGGSFFSTVSLSIEQWIGCVLLGMLSLIFGVLLRLI 938 (941)
T ss_pred HHHHHHHHHHH-HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555543333 3334566888999876666666665555555566653
No 10
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.14 E-value=1.2e-09 Score=117.10 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=130.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHhhcc-eeeecccCCCCC---CCCCCCCcchh----hHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW-EYDFPPFMVLIIAILNDGT-IMTISKDRVKPS---PRPDSWKLNEI----FATGIV 71 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~-~f~~~p~~ILlialLnD~~-~mtIa~DrV~pS---~~P~~W~l~~I----~~~~~v 71 (301)
|+.|.++.|+..++.+++..++. +.|++|+|++++|+++|+. .+++++|+.++. ++|++|+-+-+ +...++
T Consensus 683 ~i~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~ 762 (884)
T TIGR01522 683 FITFQLSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILV 762 (884)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHH
Confidence 35788889999887444444432 5799999999999999966 589999999976 66888876444 344556
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCC-CCccc--CCcHHHHHHHH
Q 037174 72 IGTYLALVTVLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLE--RPGALLMCAFV 148 (301)
Q Consensus 72 lG~~~av~tv~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~s--rPS~~Ll~A~~ 148 (301)
.|++..+..++.|+.... .+ ...++-+|++|.-+++.+.+..|..|+++ ..|+. .+.++++++++
T Consensus 763 ~g~~~~~~~~~~~~~~~~-------~~-----~~~~~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 830 (884)
T TIGR01522 763 SAIIIVVGTLFVFVREMQ-------DG-----VITARDTTMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVG 830 (884)
T ss_pred HHHHHHHHHHHHHHHHHc-------CC-----cchhhHHHHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHH
Confidence 677777666655544321 01 11245689999999999999999999976 33432 35677887777
Q ss_pred HHHHHHHHHhhhhh-cccccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 037174 149 VAQLVATLIAVYAH-ISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFI 196 (301)
Q Consensus 149 ~a~liatlia~~g~-~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~ 196 (301)
+..++..++.+.|. ..+++..|+++..+.++.+.+++.++...+.|..
T Consensus 831 ~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~ 879 (884)
T TIGR01522 831 GSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLITSSVCIVDEIRKKV 879 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777655555443 3456788999987777777777777666667754
No 11
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.12 E-value=1.2e-09 Score=119.08 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=133.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHhh-cceeeecccCCCCC--CCCCCCCcchh-----h
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW------EYDFPPFMVLIIAILND-GTIMTISKDRVKPS--PRPDSWKLNEI-----F 66 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~------~f~~~p~~ILlialLnD-~~~mtIa~DrV~pS--~~P~~W~l~~I-----~ 66 (301)
|+.|.+++|+..++.+++..++. ++|++|+|++++|++.| ++.+++++|...+. ++|-+++-..+ +
T Consensus 811 ~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~~~ 890 (1053)
T TIGR01523 811 FVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELI 890 (1053)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHHhhccCCCChhHHhcCCCCCCccccCHHHH
Confidence 46789999999999555444442 36889999999999999 89999999999986 44444554444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----c-c--ccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCC-CCccc-
Q 037174 67 ATGIVIGTYLALVTVLFFWVVVDT----D-F--FETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLE- 137 (301)
Q Consensus 67 ~~~~vlG~~~av~tv~~f~i~~~t----~-f--f~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~s- 137 (301)
...+..|++.++.+++.|++.... . . +...++. +. .+..+-||+.|.-+++.+.+..|..|+++ .+|..
T Consensus 891 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~a~t~~f~~l~~~~~~~~~~~r~~~~~~~~~~ 968 (1053)
T TIGR01523 891 IDMFAYGFFLGGSCLASFTGILYGFGSGNLGHDCDAHYHA-GC-NDVFKARSAAFATMTFCALILAVEVKDFDNSFFNLH 968 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccccc-cc-cchhhhHHHHHHHHHHHHHHHHHHHhcCchhhhhcC
Confidence 457788999998888877654210 0 0 0000000 00 01345689999999999999999999975 44432
Q ss_pred ----------------CCcHHHHHHHHHHHHHHHHHhhhhhc-c-cccccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037174 138 ----------------RPGALLMCAFVVAQLVATLIAVYAHI-S-FAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVR 198 (301)
Q Consensus 138 ----------------rPS~~Ll~A~~~a~liatlia~~g~~-~-~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~ 198 (301)
...++++.++++..++..++.+.|.. . .++..+++|.|. ++.+.+++.++...+.|...|
T Consensus 969 ~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~~f~~~~l~~~w~-~~~~~~~~~~~~~e~~K~~~r 1046 (1053)
T TIGR01523 969 GIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDDVFKHKPIGAEWG-LAAAATIAFFFGAEIWKCGKR 1046 (1053)
T ss_pred ccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCcchHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 23567888888777777666655544 2 667889998554 456666666666777786543
No 12
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.04 E-value=4.1e-09 Score=113.49 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=132.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHhh-cceeeecccCCCCC--CCCCCCCcchh-----hHHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW-EYDFPPFMVLIIAILND-GTIMTISKDRVKPS--PRPDSWKLNEI-----FATGIV 71 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~-~f~~~p~~ILlialLnD-~~~mtIa~DrV~pS--~~P~~W~l~~I-----~~~~~v 71 (301)
|+.|.+++|+..++..++..++. +.|++|.|++++|+++| ++.+++++|+.++. .+|-+++-+++ +...+.
T Consensus 695 ~i~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qll~inli~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~ 774 (917)
T TIGR01116 695 FIRYMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLV 774 (917)
T ss_pred HHHHHHhccHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHH
Confidence 46788999999988555444442 57899999999999999 88999999999976 34434443333 334555
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccccccc----ccccc-------CCccchhhHHHHHHHHhhhhheeeeeeeCC-CCccc-
Q 037174 72 IGTYLALVTVLFFWVVVDT-DFFETHF----HVKSL-------SSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLE- 137 (301)
Q Consensus 72 lG~~~av~tv~~f~i~~~t-~ff~~~~----~~~~~-------~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~s- 137 (301)
.|.+.++.+++.|++.... .+..... +..+. ..+..+-+|+.|.-+++.|.+..|..|+++ ..|+.
T Consensus 775 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~ 854 (917)
T TIGR01116 775 VGVYVGLATVGGFVWWYLLTHFTGCDEDSFTTCPDFEDPDCYVFEGKQPARTISLSVLVVIEMFNALNALSEDQSLLRMP 854 (917)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHcCCcccccccC
Confidence 6777777665555443321 1110000 00000 001345689999999999999999999976 43432
Q ss_pred -CCcHHHHHHHHHHHHHHHHHhhhhh-cccccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 037174 138 -RPGALLMCAFVVAQLVATLIAVYAH-ISFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFI 196 (301)
Q Consensus 138 -rPS~~Ll~A~~~a~liatlia~~g~-~~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~ 196 (301)
.+.+++++++++..++..++.+.+. ...++..+++|..++++++.+++.++..++.|..
T Consensus 855 ~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~k~~ 915 (917)
T TIGR01116 855 PWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWLMVLKLSLPVILVDEVLKFF 915 (917)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777666655443 2456888999998888888888777777777854
No 13
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=97.57 E-value=5.6e-05 Score=80.11 Aligned_cols=198 Identities=14% Similarity=0.284 Sum_probs=137.5
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHhh-cceeeecccCCCCC---CCCCCCCcchh-----hHHH-H
Q 037174 2 QIYAVSITIRIVLGFVLLALI-WEYDFPPFMVLIIAILND-GTIMTISKDRVKPS---PRPDSWKLNEI-----FATG-I 70 (301)
Q Consensus 2 iiy~is~T~~ivl~f~l~ali-~~f~~~p~~ILlialLnD-~~~mtIa~DrV~pS---~~P~~W~l~~I-----~~~~-~ 70 (301)
+.|+..+|+-.+.-|++-.++ .++|+.++.+|.|.+..| .+.++++|...... +.|++-+-.++ +.++ .
T Consensus 772 IAYTLTsNipEI~PfL~fi~~giPLplgtitIL~IDLgTDmvPAiSLAYE~aEsDIM~r~PR~p~~D~LVN~rLi~~aY~ 851 (1019)
T KOG0203|consen 772 IAYTLTSNIPEITPFLLFILFGIPLPLGTVTILCIDLGTDIVPAISLAYEKAESDIMLRPPRNPKDDKLVNKRLISYSYL 851 (1019)
T ss_pred HHHHHHhcchhHhHHHHHHHhCCCcccchhhhhhhHhhcccchhhhHhccCchhhHHhcCCCCCcccccccchhHHHHHH
Confidence 468899999887755554444 378899999999999999 67899999988754 55666443333 2222 3
Q ss_pred HHHHHHHHHHHHHHHHHHh-cccccccc-c---------ccccCCc-------------cchhhHHHHHHHHhhhhheee
Q 037174 71 VIGTYLALVTVLFFWVVVD-TDFFETHF-H---------VKSLSSK-------------TEEVSSAVYLQVSIISQALIF 126 (301)
Q Consensus 71 vlG~~~av~tv~~f~i~~~-t~ff~~~~-~---------~~~~~~~-------------~~~lqt~~FL~v~it~q~lIf 126 (301)
-+|.+.++..|.+|++.+. -.|+|..+ | ++++.++ +-+-+|+-|.-+++.|-+-+.
T Consensus 852 qIG~iqa~agF~tYFvima~nGf~P~~L~~ir~~W~d~~~~Dl~DsyGQeWtyeqRk~le~tc~taFfvsIvV~Q~adLi 931 (1019)
T KOG0203|consen 852 QIGMIQALAGFFTYFVIMAENGFLPRTLVGLREDWDDDGVNDLTDSYGQEWTYEQRKYLEYTCYTAFFISIVVVQWADLI 931 (1019)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHhhHHhhhhhhhhhhhhhccccccHHHHHHHHHhhhhheeeeehHHhHhhHH
Confidence 3588888888877666544 34665421 1 1222222 125788999999999988888
Q ss_pred eeeeCC--CCcccCCcHHHHHHHHHHHHHHHHHhhhhhcc-cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037174 127 VTRSQS--WSFLERPGALLMCAFVVAQLVATLIAVYAHIS-FAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVRY 199 (301)
Q Consensus 127 vtRtr~--~f~~srPS~~Ll~A~~~a~liatlia~~g~~~-~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~~ 199 (301)
+..||+ -|=+..-.+.|..+.+...+++.++++.+... .++|.|+.|.|+.....|++.-++.-.+=|..+|-
T Consensus 932 i~KTRRnSlfqqGmrN~vl~f~v~~e~~La~fl~y~pg~~~~l~~~pl~~~~wl~a~P~~ilIfvydE~Rk~~IR~ 1007 (1019)
T KOG0203|consen 932 ICKTRRNSIFQQGMRNKVLIFAVIFETCLACFLCYCPGVLYALGMYPLKFQWWLVAFPFGILIFVYDEVRKLFIRR 1007 (1019)
T ss_pred hhhcchhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCccHHHHhccCCCCcEEEEecccceeeeeeHHHHHhHhhhh
Confidence 888876 44456788999999999999999999987543 35789999988766555555555444444555554
No 14
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00011 Score=77.92 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=123.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHhh-cceeeecccCCCCC---CCCCCCCcchh----hHHHH
Q 037174 1 MQIYAVSITIRIVLGFVLLALIW--EYDFPPFMVLIIAILND-GTIMTISKDRVKPS---PRPDSWKLNEI----FATGI 70 (301)
Q Consensus 1 Yiiy~is~T~~ivl~f~l~ali~--~f~~~p~~ILlialLnD-~~~mtIa~DrV~pS---~~P~~W~l~~I----~~~~~ 70 (301)
++.|-+|+|++-+. .+.++..+ +.|+.|.|+|.+|++-| .+.+++....+++. +.|++++-+-| +.=-+
T Consensus 743 Fir~~lSsnVgev~-~I~l~aa~~~p~pL~pvQiLWiNlvtDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~r~l 821 (972)
T KOG0202|consen 743 FIRYLLSSNVGEVV-LIFLTAAFGIPEPLIPVQILWINLVTDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIFRYL 821 (972)
T ss_pred HHHHHHhhhHHHHH-HHHHHHHhCCCCcccchhhheeeeeccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHHHHH
Confidence 36789999999988 55555554 67899999999999999 57899999999986 88999986543 33445
Q ss_pred HHHHHHHHHHHHHHHHHHh-c----cccc-ccccc--cccCCc------cchhhHHHHHHHHhhhhheeeeeeeCC-CCc
Q 037174 71 VIGTYLALVTVLFFWVVVD-T----DFFE-THFHV--KSLSSK------TEEVSSAVYLQVSIISQALIFVTRSQS-WSF 135 (301)
Q Consensus 71 vlG~~~av~tv~~f~i~~~-t----~ff~-~~~~~--~~~~~~------~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~ 135 (301)
+.|.|..+.|+..|+.-.. . .+.+ .+|+- +.+..+ ...-.|+-|--+.....+.-...|+.. ..|
T Consensus 822 ~~g~~vg~~Tv~~f~~~~~~~~~~vt~~~~~~~~~c~~~~~~~~c~~F~~~~~~tMa~tv~V~~emfNaL~~~se~~slf 901 (972)
T KOG0202|consen 822 AIGIIVGVATVGVFVWWMYGADGKVTYRQLAHYNSCCRDFYGSRCAVFEDMCPLTMALTVLVFIEMFNALNCLSENKSLF 901 (972)
T ss_pred HhheeeeeeEhHhhhHHHhcCCCCcChhhhcchhhhcccccccchhhhcccccceEEEeehhHHHHHHHhhcccCCcceE
Confidence 5677777777766544332 0 0000 00000 000000 001112222222223333333356533 222
Q ss_pred c--cCCcHHHHHHHHHHHHHHHHHhhhhhc-ccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037174 136 L--ERPGALLMCAFVVAQLVATLIAVYAHI-SFAYISGVGWGWAGVIWLYSFIFYIPLDVIKFIVRYA 200 (301)
Q Consensus 136 ~--srPS~~Ll~A~~~a~liatlia~~g~~-~~~~~~~i~w~~~~~iwl~~iv~~l~lD~vK~~~~~~ 200 (301)
. .+-..+|++|+.++.+...++-|.+.. ..+...++++.-++++...+.-++++-.+.|+.-|+.
T Consensus 902 ~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l~~~ew~~vl~~s~~V~i~dEilK~~~R~~ 969 (972)
T KOG0202|consen 902 TMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPLSLAEWLLVLAISSPVIIVDEILKFIARNY 969 (972)
T ss_pred EecccccHHHHHHHHHHHHhhheEEEechhhhhheecCCcHHHHHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 2 124568888888888776555554432 2356789999988888888888888889999987654
No 15
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.75 E-value=0.13 Score=56.99 Aligned_cols=147 Identities=10% Similarity=0.063 Sum_probs=79.1
Q ss_pred hcCCCHHHHHHHHHHhhcc-eeeecccCCCCC---CCCCCCCcchhhHH-----HHHHHHHHHHHHHHHHHHHHhccccc
Q 037174 24 EYDFPPFMVLIIAILNDGT-IMTISKDRVKPS---PRPDSWKLNEIFAT-----GIVIGTYLALVTVLFFWVVVDTDFFE 94 (301)
Q Consensus 24 ~f~~~p~~ILlialLnD~~-~mtIa~DrV~pS---~~P~~W~l~~I~~~-----~~vlG~~~av~tv~~f~i~~~t~ff~ 94 (301)
..|++++|++.++++.|.+ .++++.++..+. .+|. ..++.. .+.-|++..++.+..+.......++.
T Consensus 886 ~~~l~~~Q~l~i~li~~~~~~l~l~~~~p~~~l~~~~P~----~~l~~~~~~~si~~q~~i~~~~~~~~~~~~~~~~~~~ 961 (1054)
T TIGR01657 886 GSNLGDGQFLTIDLLLIFPVALLMSRNKPLKKLSKERPP----SNLFSVYILTSVLIQFVLHILSQVYLVFELHAQPWYK 961 (1054)
T ss_pred cCcCccHHHHHHHHHHHHHHHHHHHcCCchhhcCCCCCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 5799999999999999955 568888877753 4554 233322 22223444444444444444323331
Q ss_pred cccccccc-CCccchhhHHHHHHHHhhhhheeeeeeeCC-CCcccC-CcHHHHHHHHHHHHHHHHHhh--hh-hcccccc
Q 037174 95 THFHVKSL-SSKTEEVSSAVYLQVSIISQALIFVTRSQS-WSFLER-PGALLMCAFVVAQLVATLIAV--YA-HISFAYI 168 (301)
Q Consensus 95 ~~~~~~~~-~~~~~~lqt~~FL~v~it~q~lIfvtRtr~-~f~~sr-PS~~Ll~A~~~a~liatlia~--~g-~~~~~~~ 168 (301)
.......- .......+|.+| -++..+++..++.|++| ||.++. -.++++.+.++..++...+.. .+ ....+++
T Consensus 962 ~~~~~~~~~~~~~~~~~T~~f-~~~~~~~~~~~~~~~~g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1040 (1054)
T TIGR01657 962 PENPVDLEKENFPNLLNTVLF-FVSSFQYLITAIVNSKGPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQI 1040 (1054)
T ss_pred CCCCCCcccccCccHHHHHHH-HHHHHHHHHheEEEcCCcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhhee
Confidence 10010000 011234579999 66777888889999987 554432 233455555544333332222 12 2234566
Q ss_pred cccChhH
Q 037174 169 SGVGWGW 175 (301)
Q Consensus 169 ~~i~w~~ 175 (301)
.++|..|
T Consensus 1041 ~~~~~~~ 1047 (1054)
T TIGR01657 1041 VPLPQEF 1047 (1054)
T ss_pred eeCCHHH
Confidence 6777543
No 16
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=88.94 E-value=0.28 Score=53.06 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhh-cceeeecccCCCCC---CCCCCCCcchhhHHHHH----HHHHHHHHHHHHHHHH
Q 037174 16 FVLLALIWEYDFPPFMVLIIAILND-GTIMTISKDRVKPS---PRPDSWKLNEIFATGIV----IGTYLALVTVLFFWVV 87 (301)
Q Consensus 16 f~l~ali~~f~~~p~~ILlialLnD-~~~mtIa~DrV~pS---~~P~~W~l~~I~~~~~v----lG~~~av~tv~~f~i~ 87 (301)
|+.++..-..|+++.|+|..|++=| +..+++|||.-.++ ++|..=+-+-|.++|-= =..|..+..+++.+.+
T Consensus 820 fv~A~~~~dsPLtAVQlLWVNLIMDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~qa~YQl~vl~iL~F~G 899 (1034)
T KOG0204|consen 820 FVSACATGDSPLTAVQLLWVNLIMDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILGQAVYQLIVLFILNFAG 899 (1034)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHHHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444468999999999999999 78899999998886 77877776666555543 3444444444433333
Q ss_pred Hhccccccccccc-ccCCccchhhHHHHHHHHhhhhheeeeeeeCC--CCcccCCcHHHHHHHHHHHHH-HHHHhhhhhc
Q 037174 88 VDTDFFETHFHVK-SLSSKTEEVSSAVYLQVSIISQALIFVTRSQS--WSFLERPGALLMCAFVVAQLV-ATLIAVYAHI 163 (301)
Q Consensus 88 ~~t~ff~~~~~~~-~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~--~f~~srPS~~Ll~A~~~a~li-atlia~~g~~ 163 (301)
.. .|++. +.+.+..+..|.+|-..++.|-+.=+..|+-. -.|+.-=...+.++++...++ -.+|.-++ +
T Consensus 900 ~~------if~~~~~~~~~~~~~nTiIFNtFV~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIveF~-g 972 (1034)
T KOG0204|consen 900 KS------IFGLNGPLHSPPSVHNTIIFNTFVFCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVEFG-G 972 (1034)
T ss_pred hh------hhccCCCCCCchhhheeeehhHHHHHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhhhc-C
Confidence 21 23221 22333456668888888888888889899833 455443223333222222222 22233333 3
Q ss_pred ccccccccChhHHHH
Q 037174 164 SFAYISGVGWGWAGV 178 (301)
Q Consensus 164 ~~~~~~~i~w~~~~~ 178 (301)
.++..+++.|..+++
T Consensus 973 ~~~st~~L~~~qWl~ 987 (1034)
T KOG0204|consen 973 AFFSTTPLSLTQWLW 987 (1034)
T ss_pred cceeeecccHHHHHH
Confidence 345667887765443
No 17
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=81.79 E-value=29 Score=38.86 Aligned_cols=127 Identities=13% Similarity=0.227 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHhh-cceeeecc-cCCC-CC---CCCC---------CCCc
Q 037174 2 QIYAVSITIRIVLGFVLLALIWEY----DFPPFMVLIIAILND-GTIMTISK-DRVK-PS---PRPD---------SWKL 62 (301)
Q Consensus 2 iiy~is~T~~ivl~f~l~ali~~f----~~~p~~ILlialLnD-~~~mtIa~-DrV~-pS---~~P~---------~W~l 62 (301)
+.|.+.+|+..++..++..++-.+ ++.+.++++.|++.| ++.++++. |+=. +. +.|+ ..+.
T Consensus 834 i~~~~~kn~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~n~~~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~ 913 (1057)
T TIGR01652 834 ILYFFYKNLIFAIIQFWYSFYNGFSGQTLYEGWYMVLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFST 913 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCH
Confidence 356667777666533333333112 457778888888888 57778854 3322 11 3444 2333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccccCCccchhhHHHHHHHHhhhhheeeeeeeCCCCc
Q 037174 63 NEIFATGIVIGTYLALVTVLFFWVVVD-TDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQALIFVTRSQSWSF 135 (301)
Q Consensus 63 ~~I~~~~~vlG~~~av~tv~~f~i~~~-t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q~lIfvtRtr~~f~ 135 (301)
+.++ .-+..|++.++..+.+.+.... .+... -| ...+...+.+.+|.-+.++.++.+.. .++.|.|
T Consensus 914 ~~f~-~~~~~~~~~~~ii~~~~~~~~~~~~~~~--~g---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wt~ 980 (1057)
T TIGR01652 914 KTFW-GWMLDGIYQSLVIFFFPMFAYILGDFVS--SG---SLDDFSSVGVIVFTALVVIVNLKIAL-EINRWNW 980 (1057)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHcCCcccc--CC---cccchhhHHHHHHHHHHHHHHHHHHH-HHhHhHH
Confidence 3333 3345677777665544333322 11111 11 01234567889999999888888854 5766765
No 18
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=57.53 E-value=18 Score=27.58 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.0
Q ss_pred ccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 037174 48 KDRVKPSPRPDSWKLNEIFATGIVIGTYLALVTV 81 (301)
Q Consensus 48 ~DrV~pS~~P~~W~l~~I~~~~~vlG~~~av~tv 81 (301)
-|...+..+|.+.+-.-+...++++|+...+..+
T Consensus 44 vd~A~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 44 VDPAIVPDKPVSPKRALILALGLFLGLILGIGLA 77 (82)
T ss_pred ccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4666666789999999999999999998887654
No 19
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=50.88 E-value=1.5e+02 Score=31.06 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=27.1
Q ss_pred heeeeeeeCCCCcccCCcHHHHHHHHHHHHHHHHHhhhhhccc-ccccccChh
Q 037174 123 ALIFVTRSQSWSFLERPGALLMCAFVVAQLVATLIAVYAHISF-AYISGVGWG 174 (301)
Q Consensus 123 ~lIfvtRtr~~f~~srPS~~Ll~A~~~a~liatlia~~g~~~~-~~~~~i~w~ 174 (301)
+.+=..|.|.|--.-..|..++..++...+++.-+++.+..+. ...-+-+|+
T Consensus 208 ~~~~~~r~~~~~~~~~~sr~~~~~~~~~~~~g~yl~~~~~~~~~~~~~gg~~~ 260 (679)
T TIGR02916 208 IAVSAARNPDWSVRIAVSREMAFHSATLLGAGLYLLAMAGAGYYLRYFGGEWG 260 (679)
T ss_pred HHHHHhcccCCCcceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 3333445555554445777777777666666555544443322 122344555
No 20
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.07 E-value=64 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=20.2
Q ss_pred CCcccCCcHHHHHHHHHHHHHHHHHhhhhhccc
Q 037174 133 WSFLERPGALLMCAFVVAQLVATLIAVYAHISF 165 (301)
Q Consensus 133 ~f~~srPS~~Ll~A~~~a~liatlia~~g~~~~ 165 (301)
|-+..+|-...++++++ .++...|+.|+.|+.
T Consensus 181 W~yep~~~~~~vl~~~f-vl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 181 WIYEPRPLMWQVLGVLF-VLVTLAIVLFPLWPR 212 (372)
T ss_pred EeccCCchhHHHHHHHH-HHHHHHHHhcccCcH
Confidence 44456777666666665 344456777888864
No 21
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=27.68 E-value=2.3e+02 Score=26.35 Aligned_cols=32 Identities=6% Similarity=0.065 Sum_probs=15.6
Q ss_pred CCcccCCcHHHHHHHHHHHHHHHHHhhhhhccc
Q 037174 133 WSFLERPGALLMCAFVVAQLVATLIAVYAHISF 165 (301)
Q Consensus 133 ~f~~srPS~~Ll~A~~~a~liatlia~~g~~~~ 165 (301)
|.+. ++++.-.+..++..+...+++.|+.|+.
T Consensus 102 W~ye-~~~~~~~l~~~~~~~~v~a~~lFPlWP~ 133 (224)
T PF03839_consen 102 WIYE-PSPLMQYLIGALLLVGVIAICLFPLWPR 133 (224)
T ss_pred EEec-CCcHHHHHHHHHHHHHHHHHHhhhcChH
Confidence 4443 4444333333333334446666777764
No 22
>PF04896 AmoC: Ammonia monooxygenase/methane monooxygenase, subunit C; InterPro: IPR006980 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The C subunit from Methylococcus capsulatus str. Bath resides primarily in the membrane and consists of five transmembrane helices. Several conserved residues contribute to a metal binding centre [].; PDB: 1YEW_G 3RFR_K 3RGB_G 3CHX_C.
Probab=27.09 E-value=51 Score=31.06 Aligned_cols=141 Identities=16% Similarity=0.271 Sum_probs=66.3
Q ss_pred ecccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccccc------ccccCCccchhhHH--HHHHH
Q 037174 46 ISKDRVKPSPRPDSWKLNEIFATGIVIGTYLALVTVLFFWVVVDTDFFETHFH------VKSLSSKTEEVSSA--VYLQV 117 (301)
Q Consensus 46 Ia~DrV~pS~~P~~W~l~~I~~~~~vlG~~~av~tv~~f~i~~~t~ff~~~~~------~~~~~~~~~~lqt~--~FL~v 117 (301)
.+.||--++-.|+. .+++++.....++.+ ++.++|-+. ||.+.-| +++-.-.+.++-.. .|=-.
T Consensus 83 ktrdr~~~~l~p~e-E~rR~~~~~~wl~vy----a~avywgaS---fFtEQDgsWHQt~iRDT~FTPSHii~FY~s~Pi~ 154 (251)
T PF04896_consen 83 KTRDRNLDQLTPRE-ELRRYFTLWMWLVVY----AVAVYWGAS---FFTEQDGSWHQTVIRDTDFTPSHIIEFYLSYPIY 154 (251)
T ss_dssp HTS-STGTT--CCH-HHHHHHHHHHHHHHH----HHHHHHHHT---HHHHHHHHHHCCS--SSSTSHHHHHHTTTHHHHH
T ss_pred HhcccccccCChHH-HHHHHHHHHHHHHHH----HHHHHHhhh---eeeccCCceeeeeeecCCCChHHHHHHHHhhhHH
Confidence 35788888888998 888888777666655 444455432 3332111 11100011111111 22233
Q ss_pred HhhhhheeeeeeeCCCCcccCCcHHHHHHHHHHHHHHHHHhhhhhcc-c-----ccccccChhHHHHHHHHHHHHHHHHH
Q 037174 118 SIISQALIFVTRSQSWSFLERPGALLMCAFVVAQLVATLIAVYAHIS-F-----AYISGVGWGWAGVIWLYSFIFYIPLD 191 (301)
Q Consensus 118 ~it~q~lIfvtRtr~~f~~srPS~~Ll~A~~~a~liatlia~~g~~~-~-----~~~~~i~w~~~~~iwl~~iv~~l~lD 191 (301)
.+.+-....-.|||=|.+...=|.+++..+++-..+---++..-.+. + .--.|+.|+.+...|....+.-+.++
T Consensus 155 i~~g~g~~~ya~TRLP~~~k~~s~~~~~~v~Gp~mi~pnVg~NEwGHtfWfmEElF~APLHWgFV~fGW~al~~~Gv~~q 234 (251)
T PF04896_consen 155 IIMGVGSFLYARTRLPYFAKGFSLPYLMLVVGPFMILPNVGLNEWGHTFWFMEELFVAPLHWGFVFFGWFALAIFGVLLQ 234 (251)
T ss_dssp HHHHHHHHHHHHHHSTTTCTT-BHHHHHHHHGGGG-------------SHHHHT--SS---THHHHSTTTGGGHHHHHHH
T ss_pred HHHHHHHHhhhhccchhhhccCchHHHHHHHhHHHhhhhcccchhHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH
Confidence 44555555668999888886666666655544332211111110010 0 12468999999888877666665555
Q ss_pred HHH
Q 037174 192 VIK 194 (301)
Q Consensus 192 ~vK 194 (301)
.+-
T Consensus 235 ~~~ 237 (251)
T PF04896_consen 235 VFP 237 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 23
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.63 E-value=1.5e+02 Score=28.44 Aligned_cols=13 Identities=15% Similarity=0.685 Sum_probs=8.3
Q ss_pred cccccccccChhH
Q 037174 163 ISFAYISGVGWGW 175 (301)
Q Consensus 163 ~~~~~~~~i~w~~ 175 (301)
.++-.|+.+.|.+
T Consensus 284 MNf~~mPel~~~~ 296 (322)
T COG0598 284 MNFKGMPELDWPY 296 (322)
T ss_pred cCCCCCcCCCCcc
Confidence 3454577777776
No 24
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=26.06 E-value=2.1e+02 Score=26.80 Aligned_cols=12 Identities=17% Similarity=0.947 Sum_probs=6.6
Q ss_pred ccccccccChhH
Q 037174 164 SFAYISGVGWGW 175 (301)
Q Consensus 164 ~~~~~~~i~w~~ 175 (301)
++..|+.+.|.|
T Consensus 281 Nf~~mP~l~~~~ 292 (318)
T TIGR00383 281 NFKFMPELNWKY 292 (318)
T ss_pred CcccCccccchh
Confidence 444566666554
No 25
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.57 E-value=2.8e+02 Score=21.34 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 037174 3 IYAVSITIRIVLGFVLLALIWE 24 (301)
Q Consensus 3 iy~is~T~~ivl~f~l~ali~~ 24 (301)
.|.+...+|+++ |+++++.+.
T Consensus 19 ~Y~i~M~~Ri~~-fvlA~~~~~ 39 (73)
T PF11298_consen 19 RYLIMMGIRIPC-FVLAAVVYR 39 (73)
T ss_pred HHHHHHHHHHHH-HHHHHHHHh
Confidence 689999999988 777777653
No 26
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.96 E-value=2.5e+02 Score=26.77 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=6.9
Q ss_pred ccccccccChhH
Q 037174 164 SFAYISGVGWGW 175 (301)
Q Consensus 164 ~~~~~~~i~w~~ 175 (301)
++.+|+.+.|.+
T Consensus 287 Nf~~mPel~~~~ 298 (324)
T PRK09546 287 NLGGIPGGGWPF 298 (324)
T ss_pred ccCCCCCcCCcc
Confidence 343577766654
No 27
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=20.54 E-value=5.5e+02 Score=22.01 Aligned_cols=35 Identities=17% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037174 54 SPRPDSWKLNEIFATGIVIGTYLALVTVLFFWVVV 88 (301)
Q Consensus 54 S~~P~~W~l~~I~~~~~vlG~~~av~tv~~f~i~~ 88 (301)
.+-|-+++.--+.-.+.++|.-.+..+++.|....
T Consensus 4 ~pVPiTlQt~~v~l~g~~Lg~~~g~~s~~~YlllG 38 (148)
T PF02632_consen 4 GPVPITLQTLAVMLAGLLLGPRRGFLSVLLYLLLG 38 (148)
T ss_pred CCcchhHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 35677777777888999999999999988776653
No 28
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.33 E-value=9.2e+02 Score=24.84 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCccchhhHHHHHHHHhhhh-----heeeeeee
Q 037174 56 RPDSWKLNEIFATGIVIGTYLALVTVLFFWVVVDTDFFETHFHVKSLSSKTEEVSSAVYLQVSIISQ-----ALIFVTRS 130 (301)
Q Consensus 56 ~P~~W~l~~I~~~~~vlG~~~av~tv~~f~i~~~t~ff~~~~~~~~~~~~~~~lqt~~FL~v~it~q-----~lIfvtRt 130 (301)
.+.+-+++|...++..==....++..+-.|+.. |+.+.+|++ .-.-..+|+-.-+.+- +-..+-|+
T Consensus 5 ~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~---fYTdv~Gis------~~~aG~iflv~RiiDAi~DP~~G~i~D~t 75 (467)
T COG2211 5 SSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLF---FYTDVFGLS------AALAGTIFLVARIIDAITDPIMGFIVDRT 75 (467)
T ss_pred ccCcccHHHHHhhcchhhHHHHHHHHHHHHHHH---HHhcccCCc------HHHHHHHHHHHHHHHHHhcchheeeeccc
Confidence 345666667666654211122223333344443 455677764 3355677777665554 33556677
Q ss_pred CCCCcccCCcHHHHHHHHHHHHHHHHH
Q 037174 131 QSWSFLERPGALLMCAFVVAQLVATLI 157 (301)
Q Consensus 131 r~~f~~srPS~~Ll~A~~~a~liatli 157 (301)
|+.+=+-|| +++.+.+-..+++.+.
T Consensus 76 ~~r~GrfRP--~lL~g~ip~~i~~~l~ 100 (467)
T COG2211 76 RSRWGRFRP--WLLWGAIPFAIVAVLL 100 (467)
T ss_pred ccccccccH--HHHHHhHHHHHHHHHH
Confidence 765445567 5555555444444333
No 29
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=20.01 E-value=2.1e+02 Score=25.61 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 037174 49 DRVKPSPRPDSWKLNEIFATGIVIGTYLALVTVLFFWV 86 (301)
Q Consensus 49 DrV~pS~~P~~W~l~~I~~~~~vlG~~~av~tv~~f~i 86 (301)
|...+..+|.+.+.......|+++|....+.-+.+.-.
T Consensus 161 ~~a~~p~~p~~P~~~~~~~~g~~~G~~~~~~~~~~~~~ 198 (226)
T TIGR01006 161 EEAKPATTPSSPNPKRNLLIGFLLGLVVALIIVLLKEL 198 (226)
T ss_pred ecCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567888888889999999998877654433333
Done!