BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037178
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 27 QFPATVIQRNKHSLRSIFKE--KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKAL 84
Q P ++ R K S ++ ++ +L T S LH L + T ++LN
Sbjct: 395 QKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLH-LSVLRTELRPGETLNVNF 453
Query: 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHE----LVSASTQFSNDFIINTRLI 140
L + H A ++ T +++ + ++ G++V E LV + DFI + RL+
Sbjct: 454 LLRMDRAHEAKIRYYTYLIMNKG---RLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLV 510
Query: 141 TMYSLCGFPLDSRRVFDSL 159
Y+L G V DS+
Sbjct: 511 AYYTLIGASGQREVVADSV 529
>pdb|3FRP|G Chain G, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|G Chain G, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 252
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 27 QFPATVIQRNKHSLRSIFKEKSSLSLSAKTN--------NASTQGLHFLQEITTLCEESK 78
Q P +V++ + +R+I + + + +AST+G + Q+ S+
Sbjct: 87 QMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSR 146
Query: 79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEI 115
++ + L++ LH+ ++K + L + G K +++
Sbjct: 147 AVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKV 183
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 27 QFPATVIQRNKHSLRSIFKE--KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKAL 84
Q P ++ R K S ++ ++ +L T S LH L + T ++LN
Sbjct: 395 QKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLH-LSVLRTELRPGETLNVNF 453
Query: 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHE----LVSASTQFSNDFIINTRLI 140
L + H A ++ T +++ + ++ G++V E LV + DFI + RL+
Sbjct: 454 LLRMDRAHEAKIRYYTYLIMNKG---RLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLV 510
Query: 141 TMYSLCGFPLDSRRVFDSL 159
Y+L G V DS+
Sbjct: 511 AYYTLIGASGQREVVADSV 529
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 27 QFPATVIQRNKHSLRSIFKE--KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKAL 84
Q P ++ R K S ++ ++ +L T S LH L + T ++LN
Sbjct: 395 QKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLH-LSVLRTELRPGETLNVNF 453
Query: 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHE----LVSASTQFSNDFIINTRLI 140
L + H A ++ T +++ + ++ G++V E LV + DFI + RL+
Sbjct: 454 LLRMDRAHEAKIRYYTYLIMNKG---RLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLV 510
Query: 141 TMYSLCGFPLDSRRVFDSL 159
Y+L G V DS+
Sbjct: 511 AYYTLIGASGQREVVADSV 529
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 27 QFPATVIQRNKHSLRSIFKE--KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKAL 84
Q P ++ R K S ++ ++ +L T S LH L + T ++LN
Sbjct: 395 QKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLH-LSVLRTELRPGETLNVNF 453
Query: 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHE----LVSASTQFSNDFIINTRLI 140
L + H A ++ T +++ + ++ G++V E LV + DFI + RL+
Sbjct: 454 LLRMDRAHEAKIRYYTYLIMNKG---RLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLV 510
Query: 141 TMYSLCGFPLDSRRVFDSL 159
Y+L G V DS+
Sbjct: 511 AYYTLIGASGQREVVADSV 529
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 27 QFPATVIQRNKHSLRSIFKE--KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKAL 84
Q P ++ R K S ++ ++ +L T S LH L + T ++LN
Sbjct: 395 QKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLH-LSVLRTELRPGETLNVNF 453
Query: 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHE----LVSASTQFSNDFIINTRLI 140
L + H A ++ T +++ + ++ G++V E LV + DFI + RL+
Sbjct: 454 LLRMDRAHEAKIRYYTYLIMNKG---RLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLV 510
Query: 141 TMYSLCGFPLDSRRVFDSL 159
Y+L G V DS+
Sbjct: 511 AYYTLIGASGQREVVADSV 529
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 27 QFPATVIQRNKHSLRSIFKE--KSSLSLSAKTNNASTQGLHFLQEITTLCEESKSLNKAL 84
Q P ++ R K S ++ ++ +L T S LH L + T ++LN
Sbjct: 395 QKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLH-LSVLRTELRPGETLNVNF 453
Query: 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHE----LVSASTQFSNDFIINTRLI 140
L + H A ++ T +++ + ++ G++V E LV + DFI + RL+
Sbjct: 454 LLRMDRAHEAKIRYYTYLIMNKG---RLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLV 510
Query: 141 TMYSLCGFPLDSRRVFDSL 159
Y+L G V DS+
Sbjct: 511 AYYTLIGASGQREVVADSV 529
>pdb|1S9V|A Chain A, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|D Chain D, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 193
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 16 FPSLRQKKSQPQFPATVIQRNKHSLRSIFKEKSSLSLSAKTN 57
P LRQ + PQF T I KH+L S+ K +S +A TN
Sbjct: 48 LPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS---TAATN 86
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 27 QFPATVIQRNKHSLRSIFKEKSSLSLSAKTN--------NASTQGLHFLQEITTLCEESK 78
Q P +V++ + +R+I + + + +AST+G + Q+ S+
Sbjct: 819 QMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSR 878
Query: 79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEI 115
++ + L++ LH+ ++K + L + G K +++
Sbjct: 879 AVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKV 915
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,415,097
Number of Sequences: 62578
Number of extensions: 313183
Number of successful extensions: 880
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 9
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)