Query 037178
Match_columns 311
No_of_seqs 336 out of 1605
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4.2E-49 9.2E-54 371.9 23.0 254 53-311 179-434 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 7.3E-47 1.6E-51 364.4 24.9 254 52-310 141-396 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.2E-46 2.7E-51 360.1 23.2 247 60-311 504-762 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.9E-46 8.5E-51 359.3 25.2 253 52-310 242-496 (857)
5 PLN03218 maturation of RBCL 1; 100.0 2.1E-45 4.4E-50 351.7 23.5 253 53-309 427-690 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-44 3.2E-49 341.1 24.8 250 40-292 265-520 (697)
7 PRK11788 tetratricopeptide rep 99.8 1.3E-18 2.8E-23 154.2 21.8 234 64-304 108-354 (389)
8 PRK11788 tetratricopeptide rep 99.8 9.9E-18 2.1E-22 148.6 20.7 239 61-309 67-321 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.7 1.3E-14 2.9E-19 141.2 24.8 191 65-262 603-797 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 2.3E-14 5E-19 139.6 24.6 225 62-292 464-695 (899)
11 PF13041 PPR_2: PPR repeat fam 99.6 7.7E-15 1.7E-19 89.6 5.5 50 162-212 1-50 (50)
12 PRK15174 Vi polysaccharide exp 99.5 5.5E-12 1.2E-16 118.5 23.7 219 66-292 113-344 (656)
13 PRK15174 Vi polysaccharide exp 99.5 7.6E-12 1.6E-16 117.5 23.5 226 60-292 141-378 (656)
14 PF13041 PPR_2: PPR repeat fam 99.5 5.1E-14 1.1E-18 86.0 5.5 50 198-247 1-50 (50)
15 TIGR00990 3a0801s09 mitochondr 99.5 1.4E-11 3.1E-16 115.5 23.0 225 62-292 330-568 (615)
16 KOG4422 Uncharacterized conser 99.4 2E-11 4.4E-16 103.3 19.1 231 60-298 204-463 (625)
17 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.9E-17 110.5 8.1 222 62-292 43-274 (280)
18 PRK09782 bacteriophage N4 rece 99.4 1.1E-10 2.3E-15 113.0 21.7 222 62-292 476-703 (987)
19 PF13429 TPR_15: Tetratricopep 99.4 1.7E-12 3.7E-17 109.9 8.2 220 68-292 13-240 (280)
20 TIGR00990 3a0801s09 mitochondr 99.4 3.9E-10 8.5E-15 105.9 24.4 228 60-292 157-493 (615)
21 TIGR02521 type_IV_pilW type IV 99.4 2.4E-10 5.2E-15 93.3 20.1 191 64-261 32-229 (234)
22 PRK11447 cellulose synthase su 99.4 4.2E-10 9E-15 112.7 25.4 228 66-302 464-746 (1157)
23 TIGR02521 type_IV_pilW type IV 99.3 3.8E-10 8.2E-15 92.1 20.3 193 96-292 30-229 (234)
24 KOG4626 O-linked N-acetylgluco 99.3 9.6E-11 2.1E-15 103.5 17.3 226 65-303 254-489 (966)
25 KOG4626 O-linked N-acetylgluco 99.3 4.1E-11 8.8E-16 105.8 14.2 230 61-302 148-420 (966)
26 PRK10747 putative protoheme IX 99.3 2.7E-09 5.8E-14 94.8 24.6 214 70-292 125-387 (398)
27 PRK12370 invasion protein regu 99.3 1.5E-09 3.2E-14 100.4 22.4 224 61-292 254-499 (553)
28 PRK11447 cellulose synthase su 99.3 2.1E-09 4.6E-14 107.7 24.8 227 61-292 383-697 (1157)
29 PRK09782 bacteriophage N4 rece 99.3 1.7E-09 3.7E-14 104.8 23.1 216 70-292 516-737 (987)
30 KOG1126 DNA-binding cell divis 99.2 2.2E-10 4.8E-15 101.9 14.6 221 65-292 355-617 (638)
31 COG2956 Predicted N-acetylgluc 99.2 2.3E-09 5E-14 88.0 19.3 224 66-293 39-276 (389)
32 TIGR00540 hemY_coli hemY prote 99.2 1E-08 2.2E-13 91.5 24.6 218 69-292 159-396 (409)
33 KOG4422 Uncharacterized conser 99.2 6.3E-10 1.4E-14 94.5 15.1 206 93-306 203-436 (625)
34 PRK10049 pgaA outer membrane p 99.1 1.6E-08 3.6E-13 97.1 23.1 227 61-292 47-336 (765)
35 KOG1840 Kinesin light chain [C 99.1 2.9E-09 6.4E-14 95.2 16.7 228 65-293 201-477 (508)
36 PRK12370 invasion protein regu 99.1 7.3E-09 1.6E-13 95.9 20.0 208 79-298 319-536 (553)
37 PRK10049 pgaA outer membrane p 99.1 3.3E-08 7.2E-13 95.0 24.6 226 61-292 81-385 (765)
38 PRK10747 putative protoheme IX 99.1 1.2E-08 2.6E-13 90.6 19.1 228 66-306 85-364 (398)
39 PF12854 PPR_1: PPR repeat 99.1 1.9E-10 4.2E-15 63.4 4.3 33 230-262 2-34 (34)
40 PF12854 PPR_1: PPR repeat 99.0 4E-10 8.7E-15 62.1 4.2 34 127-160 1-34 (34)
41 KOG4318 Bicoid mRNA stability 99.0 4.5E-09 9.8E-14 96.5 13.1 226 58-308 20-276 (1088)
42 TIGR00540 hemY_coli hemY prote 99.0 4.1E-08 8.8E-13 87.6 18.2 230 71-306 126-373 (409)
43 KOG1129 TPR repeat-containing 99.0 2E-08 4.4E-13 82.7 14.1 227 67-302 227-461 (478)
44 COG3071 HemY Uncharacterized e 99.0 5.2E-07 1.1E-11 76.4 22.7 232 61-303 116-396 (400)
45 KOG1155 Anaphase-promoting com 99.0 5.6E-08 1.2E-12 83.6 17.1 217 66-292 264-492 (559)
46 PRK14574 hmsH outer membrane p 99.0 3.4E-07 7.3E-12 87.5 24.1 217 72-292 111-393 (822)
47 PRK11189 lipoprotein NlpI; Pro 99.0 4.9E-07 1.1E-11 77.1 22.8 91 100-192 67-160 (296)
48 KOG1126 DNA-binding cell divis 99.0 1.8E-08 3.9E-13 90.0 14.0 217 79-305 334-592 (638)
49 COG2956 Predicted N-acetylgluc 98.9 2.1E-07 4.5E-12 76.7 16.0 217 40-263 43-277 (389)
50 PF04733 Coatomer_E: Coatomer 98.8 4.9E-07 1.1E-11 76.4 17.8 216 65-292 37-262 (290)
51 COG3071 HemY Uncharacterized e 98.8 1.2E-06 2.6E-11 74.2 19.8 226 75-308 96-366 (400)
52 PRK14574 hmsH outer membrane p 98.8 1.6E-06 3.4E-11 83.0 22.4 188 102-292 297-510 (822)
53 PRK11189 lipoprotein NlpI; Pro 98.8 1.4E-06 3.1E-11 74.2 20.0 191 64-263 65-264 (296)
54 KOG4318 Bicoid mRNA stability 98.8 1.1E-07 2.4E-12 87.6 13.7 211 87-310 13-246 (1088)
55 COG3063 PilF Tfp pilus assembl 98.8 2.3E-06 5E-11 67.5 18.7 190 66-262 38-234 (250)
56 KOG2003 TPR repeat-containing 98.8 7E-07 1.5E-11 76.9 17.0 177 110-292 503-686 (840)
57 PF12569 NARP1: NMDA receptor- 98.8 2.5E-06 5.5E-11 77.3 21.4 222 72-299 13-293 (517)
58 KOG0547 Translocase of outer m 98.8 6E-07 1.3E-11 77.9 16.0 212 75-292 338-563 (606)
59 KOG1070 rRNA processing protei 98.7 1.4E-06 3E-11 84.1 18.7 201 97-301 1458-1667(1710)
60 KOG1155 Anaphase-promoting com 98.7 1.1E-06 2.3E-11 75.9 16.2 221 61-292 297-533 (559)
61 KOG1173 Anaphase-promoting com 98.7 1E-06 2.2E-11 77.7 15.5 239 61-309 242-528 (611)
62 KOG1840 Kinesin light chain [C 98.7 1.7E-06 3.6E-11 77.8 16.8 195 67-262 245-477 (508)
63 TIGR00756 PPR pentatricopeptid 98.7 3.1E-08 6.8E-13 55.1 3.6 35 267-303 1-35 (35)
64 KOG1129 TPR repeat-containing 98.6 4.1E-07 8.9E-12 75.2 10.7 200 60-264 253-458 (478)
65 COG3063 PilF Tfp pilus assembl 98.6 2.1E-05 4.5E-10 62.3 19.0 190 99-292 37-233 (250)
66 KOG1070 rRNA processing protei 98.6 1E-05 2.2E-10 78.4 19.7 219 62-288 1457-1693(1710)
67 TIGR00756 PPR pentatricopeptid 98.5 1.1E-07 2.4E-12 52.8 3.8 33 166-199 2-34 (35)
68 KOG2076 RNA polymerase III tra 98.5 2.8E-05 6E-10 72.4 21.1 228 61-292 171-475 (895)
69 cd05804 StaR_like StaR_like; a 98.5 3.3E-05 7.2E-10 67.6 20.8 218 72-292 52-290 (355)
70 PF04733 Coatomer_E: Coatomer 98.5 3.5E-06 7.6E-11 71.2 13.8 194 59-263 62-264 (290)
71 PF13812 PPR_3: Pentatricopept 98.5 1.3E-07 2.8E-12 52.2 3.4 34 266-301 1-34 (34)
72 KOG1173 Anaphase-promoting com 98.5 2.1E-05 4.6E-10 69.7 18.4 211 60-277 309-533 (611)
73 PF13812 PPR_3: Pentatricopept 98.4 2.9E-07 6.2E-12 50.8 3.8 33 165-198 2-34 (34)
74 KOG2002 TPR-containing nuclear 98.4 8.1E-06 1.8E-10 76.4 15.0 227 61-292 450-706 (1018)
75 KOG0547 Translocase of outer m 98.4 1.1E-05 2.4E-10 70.3 14.5 189 66-262 363-564 (606)
76 TIGR03302 OM_YfiO outer membra 98.4 2E-05 4.4E-10 64.8 15.5 53 240-292 171-229 (235)
77 PF12569 NARP1: NMDA receptor- 98.4 0.00025 5.5E-09 64.6 23.2 226 62-292 36-331 (517)
78 KOG0495 HAT repeat protein [RN 98.4 0.0003 6.6E-09 63.8 22.1 223 64-292 517-779 (913)
79 KOG1125 TPR repeat-containing 98.4 7.8E-06 1.7E-10 72.5 12.2 214 73-292 295-524 (579)
80 COG4783 Putative Zn-dependent 98.3 0.00014 3E-09 63.6 19.5 132 143-292 316-451 (484)
81 KOG1128 Uncharacterized conser 98.3 1.1E-05 2.4E-10 73.4 13.2 208 68-293 403-614 (777)
82 KOG1915 Cell cycle control pro 98.3 7.7E-05 1.7E-09 65.0 17.3 232 62-301 106-354 (677)
83 KOG2002 TPR-containing nuclear 98.3 1.7E-05 3.7E-10 74.4 14.4 182 79-262 545-743 (1018)
84 KOG2076 RNA polymerase III tra 98.3 6.3E-05 1.4E-09 70.1 17.7 188 104-292 287-509 (895)
85 TIGR03302 OM_YfiO outer membra 98.3 6.9E-05 1.5E-09 61.6 16.4 183 60-262 30-230 (235)
86 COG5010 TadD Flp pilus assembl 98.3 0.00032 7E-09 56.7 19.2 164 96-266 66-233 (257)
87 KOG0495 HAT repeat protein [RN 98.3 0.00039 8.4E-09 63.1 21.5 226 62-292 617-877 (913)
88 PF01535 PPR: PPR repeat; Int 98.3 6.3E-07 1.4E-11 48.2 2.7 31 267-299 1-31 (31)
89 cd05804 StaR_like StaR_like; a 98.3 0.00021 4.5E-09 62.6 19.7 195 64-264 7-215 (355)
90 PLN02789 farnesyltranstransfer 98.3 0.0005 1.1E-08 59.0 21.0 221 66-292 40-299 (320)
91 KOG2047 mRNA splicing factor [ 98.2 0.00049 1.1E-08 62.3 21.0 57 236-292 388-451 (835)
92 PF01535 PPR: PPR repeat; Int 98.2 1.4E-06 3E-11 46.8 3.0 27 166-192 2-28 (31)
93 PRK15179 Vi polysaccharide bio 98.2 0.00026 5.6E-09 66.9 19.8 144 93-242 82-229 (694)
94 PRK10370 formate-dependent nit 98.2 5.4E-05 1.2E-09 60.4 13.2 116 110-230 52-174 (198)
95 KOG1128 Uncharacterized conser 98.2 6.1E-05 1.3E-09 68.8 14.3 202 64-278 425-635 (777)
96 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.5E-05 1.2E-09 66.3 13.7 125 135-262 171-295 (395)
97 COG5010 TadD Flp pilus assembl 98.2 3.3E-05 7.1E-10 62.3 11.2 154 67-225 70-227 (257)
98 KOG1915 Cell cycle control pro 98.2 0.00036 7.8E-09 61.0 18.1 68 60-128 171-238 (677)
99 KOG2003 TPR repeat-containing 98.2 0.00016 3.5E-09 62.7 15.8 197 75-280 502-708 (840)
100 PRK15359 type III secretion sy 98.1 5.7E-05 1.2E-09 57.0 11.5 88 139-229 30-121 (144)
101 PRK10370 formate-dependent nit 98.1 0.00012 2.5E-09 58.5 13.3 144 103-263 22-172 (198)
102 PRK15359 type III secretion sy 98.1 6.9E-05 1.5E-09 56.6 11.0 111 85-202 14-127 (144)
103 PRK15179 Vi polysaccharide bio 98.1 0.00042 9.2E-09 65.5 18.4 178 61-249 84-269 (694)
104 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.3E-09 64.5 12.9 121 166-292 171-294 (395)
105 KOG1174 Anaphase-promoting com 98.0 0.0012 2.7E-08 56.8 18.6 145 144-292 345-497 (564)
106 PF08579 RPM2: Mitochondrial r 98.0 9.4E-05 2E-09 51.9 9.8 81 166-247 27-116 (120)
107 PF10037 MRP-S27: Mitochondria 98.0 6.9E-05 1.5E-09 66.1 11.3 118 130-248 63-186 (429)
108 TIGR02552 LcrH_SycD type III s 98.0 0.00014 3.1E-09 54.0 11.8 91 100-192 20-113 (135)
109 KOG3616 Selective LIM binding 98.0 0.0002 4.4E-09 65.7 14.3 166 73-262 742-909 (1636)
110 KOG4340 Uncharacterized conser 98.0 0.00082 1.8E-08 55.5 16.4 224 62-292 43-336 (459)
111 KOG3616 Selective LIM binding 98.0 0.00031 6.8E-09 64.5 15.1 103 173-287 741-845 (1636)
112 PF09976 TPR_21: Tetratricopep 98.0 0.00034 7.4E-09 52.9 13.3 121 167-291 15-143 (145)
113 KOG3081 Vesicle coat complex C 98.0 0.0013 2.8E-08 53.4 16.7 116 141-263 116-235 (299)
114 PF09976 TPR_21: Tetratricopep 97.9 0.00065 1.4E-08 51.3 14.1 122 65-189 14-143 (145)
115 KOG3081 Vesicle coat complex C 97.9 0.00061 1.3E-08 55.3 13.6 168 85-262 94-269 (299)
116 PRK04841 transcriptional regul 97.9 0.001 2.2E-08 65.9 18.0 227 65-292 493-757 (903)
117 COG4783 Putative Zn-dependent 97.9 0.00078 1.7E-08 59.1 14.8 149 73-244 316-471 (484)
118 PF06239 ECSIT: Evolutionarily 97.9 0.00015 3.2E-09 57.2 9.2 115 96-227 46-166 (228)
119 KOG1174 Anaphase-promoting com 97.8 0.0032 7E-08 54.4 17.4 192 64-264 301-500 (564)
120 PF06239 ECSIT: Evolutionarily 97.8 0.00018 3.9E-09 56.7 9.0 89 161-250 44-153 (228)
121 PF10037 MRP-S27: Mitochondria 97.8 0.00029 6.2E-09 62.2 11.3 117 163-279 65-186 (429)
122 PRK14720 transcript cleavage f 97.8 0.0016 3.5E-08 62.6 16.8 210 60-277 28-268 (906)
123 PF08579 RPM2: Mitochondrial r 97.8 0.00036 7.8E-09 49.0 8.8 88 101-213 29-117 (120)
124 KOG2376 Signal recognition par 97.7 0.0075 1.6E-07 54.4 18.9 207 68-292 17-250 (652)
125 PRK14720 transcript cleavage f 97.7 0.0031 6.8E-08 60.7 17.5 178 93-292 27-249 (906)
126 TIGR02552 LcrH_SycD type III s 97.7 0.00034 7.3E-09 52.0 9.0 97 62-161 16-113 (135)
127 KOG1125 TPR repeat-containing 97.7 0.0016 3.5E-08 58.3 14.2 107 116-225 413-523 (579)
128 cd00189 TPR Tetratricopeptide 97.7 0.00048 1E-08 46.7 9.2 88 169-260 5-93 (100)
129 PRK02603 photosystem I assembl 97.7 0.0012 2.6E-08 51.5 12.3 114 166-281 37-166 (172)
130 PF05843 Suf: Suppressor of fo 97.7 0.00054 1.2E-08 57.9 11.0 125 135-262 3-134 (280)
131 PRK04841 transcriptional regul 97.7 0.0066 1.4E-07 60.2 20.1 220 71-292 460-717 (903)
132 KOG2047 mRNA splicing factor [ 97.7 0.017 3.8E-07 52.7 20.1 113 178-292 361-503 (835)
133 KOG0985 Vesicle coat protein c 97.6 0.0079 1.7E-07 57.6 18.3 187 80-292 1036-1246(1666)
134 PF05843 Suf: Suppressor of fo 97.6 0.001 2.2E-08 56.3 11.4 141 64-210 2-150 (280)
135 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0014 3E-08 47.2 10.8 88 139-229 8-105 (119)
136 cd00189 TPR Tetratricopeptide 97.6 0.00058 1.2E-08 46.3 8.4 89 67-158 4-93 (100)
137 PF04840 Vps16_C: Vps16, C-ter 97.6 0.02 4.4E-07 49.1 19.0 83 202-290 179-261 (319)
138 PLN02789 farnesyltranstransfer 97.6 0.018 3.9E-07 49.5 18.7 192 79-292 35-247 (320)
139 CHL00033 ycf3 photosystem I as 97.5 0.0034 7.3E-08 48.7 12.3 79 166-246 37-117 (168)
140 KOG3060 Uncharacterized conser 97.5 0.029 6.3E-07 45.5 17.3 180 79-263 27-219 (289)
141 PF12895 Apc3: Anaphase-promot 97.5 0.00015 3.3E-09 49.1 4.0 20 206-225 31-50 (84)
142 PF12895 Apc3: Anaphase-promot 97.5 0.00044 9.6E-09 46.8 6.3 78 213-291 2-83 (84)
143 KOG3060 Uncharacterized conser 97.5 0.024 5.2E-07 46.0 16.6 172 65-242 54-233 (289)
144 KOG2053 Mitochondrial inherita 97.5 0.041 9E-07 52.1 20.6 71 109-181 55-127 (932)
145 KOG0985 Vesicle coat protein c 97.5 0.012 2.6E-07 56.4 17.1 209 64-289 1105-1335(1666)
146 KOG2053 Mitochondrial inherita 97.4 0.026 5.7E-07 53.4 18.8 206 65-274 43-265 (932)
147 KOG3785 Uncharacterized conser 97.4 0.0069 1.5E-07 51.4 13.7 183 104-292 292-487 (557)
148 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0046 1E-07 44.4 10.7 95 166-263 4-104 (119)
149 KOG0624 dsRNA-activated protei 97.3 0.079 1.7E-06 45.0 18.8 188 68-263 43-251 (504)
150 PRK10153 DNA-binding transcrip 97.3 0.0078 1.7E-07 55.2 13.6 62 165-229 421-482 (517)
151 PF14559 TPR_19: Tetratricopep 97.3 0.0014 3E-08 42.2 6.5 61 211-272 2-64 (68)
152 KOG2376 Signal recognition par 97.3 0.023 5E-07 51.4 15.9 177 101-292 16-201 (652)
153 KOG3785 Uncharacterized conser 97.3 0.0074 1.6E-07 51.2 12.1 194 68-269 290-497 (557)
154 PF12688 TPR_5: Tetratrico pep 97.3 0.0071 1.5E-07 43.8 10.6 108 170-278 7-118 (120)
155 KOG0624 dsRNA-activated protei 97.3 0.076 1.6E-06 45.2 17.8 227 69-304 161-427 (504)
156 PF04840 Vps16_C: Vps16, C-ter 97.3 0.042 9.2E-07 47.2 16.9 110 136-262 180-289 (319)
157 PRK10866 outer membrane biogen 97.2 0.081 1.8E-06 43.7 18.1 55 69-124 38-96 (243)
158 PLN03088 SGT1, suppressor of 97.2 0.0044 9.6E-08 54.3 11.1 88 70-160 9-97 (356)
159 KOG4162 Predicted calmodulin-b 97.2 0.081 1.7E-06 49.4 19.1 226 60-292 477-780 (799)
160 PRK02603 photosystem I assembl 97.2 0.0059 1.3E-07 47.5 10.7 129 62-215 34-166 (172)
161 PLN03088 SGT1, suppressor of 97.2 0.0076 1.7E-07 52.8 11.8 100 105-209 10-112 (356)
162 KOG1156 N-terminal acetyltrans 97.2 0.034 7.3E-07 50.9 15.7 211 79-292 56-280 (700)
163 KOG1914 mRNA cleavage and poly 97.2 0.026 5.7E-07 50.6 14.7 178 80-262 309-499 (656)
164 PRK15363 pathogenicity island 97.1 0.011 2.3E-07 44.7 10.7 83 142-227 44-130 (157)
165 PF14938 SNAP: Soluble NSF att 97.1 0.022 4.8E-07 48.2 13.9 124 65-191 37-182 (282)
166 CHL00033 ycf3 photosystem I as 97.1 0.0099 2.1E-07 46.1 10.9 78 64-144 36-117 (168)
167 KOG4162 Predicted calmodulin-b 97.1 0.037 8E-07 51.6 15.7 199 61-262 321-540 (799)
168 KOG3617 WD40 and TPR repeat-co 97.1 0.033 7.1E-07 52.5 15.4 81 166-262 914-994 (1416)
169 KOG3617 WD40 and TPR repeat-co 97.1 0.013 2.8E-07 55.0 12.8 51 240-292 943-993 (1416)
170 KOG1538 Uncharacterized conser 97.1 0.016 3.5E-07 53.0 12.8 222 60-292 553-843 (1081)
171 KOG1156 N-terminal acetyltrans 97.0 0.086 1.9E-06 48.3 17.2 238 58-305 70-325 (700)
172 PRK15363 pathogenicity island 97.0 0.0071 1.5E-07 45.7 9.0 83 73-158 45-128 (157)
173 KOG1127 TPR repeat-containing 97.0 0.014 3.1E-07 55.8 12.7 160 65-229 494-659 (1238)
174 KOG4340 Uncharacterized conser 97.0 0.089 1.9E-06 43.9 15.3 153 107-263 154-338 (459)
175 KOG2796 Uncharacterized conser 96.9 0.029 6.2E-07 45.9 11.9 28 64-92 70-97 (366)
176 KOG0548 Molecular co-chaperone 96.9 0.043 9.4E-07 49.1 14.0 213 66-292 227-452 (539)
177 COG4700 Uncharacterized protei 96.9 0.14 3E-06 39.8 14.9 132 128-262 84-220 (251)
178 PF12921 ATP13: Mitochondrial 96.9 0.017 3.7E-07 42.3 9.6 97 133-246 2-99 (126)
179 PRK10153 DNA-binding transcrip 96.8 0.036 7.8E-07 51.0 13.5 140 128-269 332-489 (517)
180 PF14938 SNAP: Soluble NSF att 96.8 0.081 1.8E-06 44.8 14.6 126 166-292 116-263 (282)
181 KOG2041 WD40 repeat protein [G 96.8 0.047 1E-06 50.5 13.4 165 93-264 688-881 (1189)
182 PF12921 ATP13: Mitochondrial 96.8 0.02 4.2E-07 42.0 9.3 101 96-215 1-103 (126)
183 PF14559 TPR_19: Tetratricopep 96.8 0.0034 7.3E-08 40.3 4.8 49 110-160 4-52 (68)
184 KOG1127 TPR repeat-containing 96.8 0.045 9.7E-07 52.6 13.6 123 99-226 494-622 (1238)
185 PF13525 YfiO: Outer membrane 96.7 0.15 3.2E-06 40.9 14.8 54 70-124 12-69 (203)
186 COG4700 Uncharacterized protei 96.7 0.2 4.4E-06 38.9 15.1 127 93-223 85-216 (251)
187 PF04053 Coatomer_WDAD: Coatom 96.7 0.097 2.1E-06 47.1 14.7 159 71-262 269-429 (443)
188 smart00299 CLH Clathrin heavy 96.6 0.18 3.9E-06 37.6 14.4 125 101-246 11-136 (140)
189 PF13414 TPR_11: TPR repeat; P 96.6 0.01 2.2E-07 38.2 6.1 58 202-260 5-63 (69)
190 KOG3941 Intermediate in Toll s 96.5 0.026 5.6E-07 46.6 8.8 114 95-226 65-185 (406)
191 PF13432 TPR_16: Tetratricopep 96.5 0.012 2.6E-07 37.4 5.8 10 246-255 42-51 (65)
192 PRK10803 tol-pal system protei 96.4 0.062 1.3E-06 44.9 11.3 96 165-263 144-245 (263)
193 KOG0553 TPR repeat-containing 96.4 0.028 6E-07 46.7 8.9 99 107-210 91-192 (304)
194 PF13432 TPR_16: Tetratricopep 96.4 0.011 2.5E-07 37.5 5.5 53 71-124 5-58 (65)
195 KOG3941 Intermediate in Toll s 96.4 0.03 6.6E-07 46.2 8.8 110 152-262 53-186 (406)
196 KOG0553 TPR repeat-containing 96.4 0.036 7.7E-07 46.1 9.3 92 73-167 91-185 (304)
197 KOG1914 mRNA cleavage and poly 96.4 0.56 1.2E-05 42.5 17.0 125 165-292 367-498 (656)
198 PF13424 TPR_12: Tetratricopep 96.3 0.0048 1E-07 40.9 3.4 56 237-292 7-72 (78)
199 PF12688 TPR_5: Tetratrico pep 96.3 0.11 2.4E-06 37.6 10.6 50 109-159 13-64 (120)
200 PF00637 Clathrin: Region in C 96.2 0.00079 1.7E-08 50.7 -0.9 129 102-250 12-140 (143)
201 KOG2796 Uncharacterized conser 96.2 0.11 2.3E-06 42.6 10.9 143 79-229 164-315 (366)
202 PF03704 BTAD: Bacterial trans 96.1 0.025 5.4E-07 42.6 6.7 71 65-136 64-139 (146)
203 COG4235 Cytochrome c biogenesi 96.0 0.27 5.9E-06 41.1 12.9 95 132-229 155-256 (287)
204 PF13414 TPR_11: TPR repeat; P 96.0 0.015 3.2E-07 37.4 4.5 59 65-124 5-65 (69)
205 COG4235 Cytochrome c biogenesi 95.9 0.12 2.6E-06 43.1 10.4 110 163-275 155-269 (287)
206 PF13424 TPR_12: Tetratricopep 95.8 0.019 4.2E-07 37.9 4.5 55 135-189 7-71 (78)
207 PF03704 BTAD: Bacterial trans 95.8 0.047 1E-06 41.1 7.0 69 166-237 64-138 (146)
208 PF13371 TPR_9: Tetratricopept 95.7 0.039 8.5E-07 35.8 5.6 54 173-229 4-58 (73)
209 PF13371 TPR_9: Tetratricopept 95.7 0.045 9.7E-07 35.5 5.8 53 71-124 3-56 (73)
210 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.16 3.6E-06 45.0 10.6 63 130-192 72-140 (453)
211 PRK10803 tol-pal system protei 95.6 0.15 3.3E-06 42.6 9.8 92 201-292 144-243 (263)
212 PF10300 DUF3808: Protein of u 95.5 0.49 1.1E-05 43.2 13.8 188 69-262 164-374 (468)
213 PF13281 DUF4071: Domain of un 95.4 0.99 2.1E-05 39.5 14.6 23 102-124 146-168 (374)
214 PRK10866 outer membrane biogen 95.2 1.5 3.3E-05 36.2 18.0 165 106-292 41-238 (243)
215 KOG2280 Vacuolar assembly/sort 95.1 3 6.6E-05 39.4 18.4 63 61-124 505-573 (829)
216 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.21 4.5E-06 44.4 9.2 64 163-229 74-141 (453)
217 smart00299 CLH Clathrin heavy 94.9 1.1 2.4E-05 33.2 12.1 123 137-278 11-137 (140)
218 PF09205 DUF1955: Domain of un 94.7 0.54 1.2E-05 34.4 9.1 60 238-299 89-151 (161)
219 KOG2280 Vacuolar assembly/sort 94.4 0.7 1.5E-05 43.4 11.3 120 127-262 678-797 (829)
220 KOG2610 Uncharacterized conser 94.4 1.3 2.8E-05 37.9 11.8 150 75-225 115-272 (491)
221 COG3118 Thioredoxin domain-con 94.3 2.6 5.7E-05 35.4 13.5 143 105-253 142-290 (304)
222 PF13170 DUF4003: Protein of u 94.3 0.63 1.4E-05 39.6 10.3 128 113-244 78-226 (297)
223 KOG2041 WD40 repeat protein [G 94.3 1.6 3.4E-05 41.0 13.1 86 199-293 851-950 (1189)
224 KOG0548 Molecular co-chaperone 94.2 2.6 5.6E-05 38.2 14.0 193 61-267 255-458 (539)
225 COG1747 Uncharacterized N-term 94.1 3.6 7.8E-05 37.3 14.5 176 62-245 65-249 (711)
226 COG5107 RNA14 Pre-mRNA 3'-end 93.9 1.7 3.7E-05 38.7 12.1 142 63-211 397-546 (660)
227 KOG4555 TPR repeat-containing 93.9 0.59 1.3E-05 34.2 7.9 87 71-159 51-141 (175)
228 COG3898 Uncharacterized membra 93.9 4.1 8.9E-05 35.7 18.4 118 79-200 99-224 (531)
229 PF07035 Mic1: Colon cancer-as 93.8 2.4 5.3E-05 32.6 12.4 125 93-229 25-149 (167)
230 PF00637 Clathrin: Region in C 93.8 0.062 1.4E-06 40.2 3.0 55 206-260 13-67 (143)
231 COG5107 RNA14 Pre-mRNA 3'-end 93.7 2 4.3E-05 38.3 12.1 125 165-292 398-528 (660)
232 PF04053 Coatomer_WDAD: Coatom 93.7 1.5 3.3E-05 39.6 12.0 158 107-292 271-428 (443)
233 COG1729 Uncharacterized protei 93.7 0.6 1.3E-05 38.6 8.6 94 135-229 144-244 (262)
234 KOG4570 Uncharacterized conser 93.5 0.7 1.5E-05 39.0 8.8 105 53-161 54-163 (418)
235 PRK15331 chaperone protein Sic 93.5 0.37 8.1E-06 36.7 6.6 83 74-159 48-131 (165)
236 PF13281 DUF4071: Domain of un 93.4 5.2 0.00011 35.2 18.2 187 56-269 131-339 (374)
237 PF10602 RPN7: 26S proteasome 93.3 1.5 3.2E-05 34.3 10.0 94 166-262 38-140 (177)
238 PF10300 DUF3808: Protein of u 93.0 3.1 6.8E-05 38.0 13.2 153 137-292 192-373 (468)
239 COG3629 DnrI DNA-binding trans 93.0 0.7 1.5E-05 38.7 8.2 77 133-209 153-236 (280)
240 PF13170 DUF4003: Protein of u 93.0 1.6 3.5E-05 37.2 10.5 163 63-228 60-249 (297)
241 COG3118 Thioredoxin domain-con 92.9 5.1 0.00011 33.8 15.7 149 139-290 140-296 (304)
242 PF13512 TPR_18: Tetratricopep 92.7 1.2 2.7E-05 33.1 8.3 70 143-213 20-95 (142)
243 PRK15331 chaperone protein Sic 92.7 0.62 1.3E-05 35.6 6.8 91 169-263 42-133 (165)
244 PF13428 TPR_14: Tetratricopep 92.5 0.36 7.7E-06 27.8 4.3 36 65-101 3-39 (44)
245 KOG4570 Uncharacterized conser 92.3 0.8 1.7E-05 38.7 7.5 102 127-230 58-165 (418)
246 KOG1920 IkappaB kinase complex 92.3 4.4 9.5E-05 40.5 13.3 19 243-261 1034-1052(1265)
247 PF04184 ST7: ST7 protein; In 92.3 8.7 0.00019 34.9 14.7 163 68-244 173-340 (539)
248 COG1729 Uncharacterized protei 92.1 1.6 3.5E-05 36.1 9.1 93 66-160 145-242 (262)
249 COG4649 Uncharacterized protei 92.1 2.3 5E-05 32.8 9.1 119 144-263 69-195 (221)
250 PF07079 DUF1347: Protein of u 92.1 1.5 3.2E-05 39.1 9.1 134 75-213 18-180 (549)
251 PF09205 DUF1955: Domain of un 92.0 3.8 8.2E-05 30.2 12.4 62 168-231 90-151 (161)
252 PF09613 HrpB1_HrpK: Bacterial 91.9 4.5 9.8E-05 30.8 11.1 104 144-256 21-130 (160)
253 PF13176 TPR_7: Tetratricopept 91.8 0.33 7.1E-06 26.6 3.4 23 167-189 2-24 (36)
254 PF07079 DUF1347: Protein of u 91.8 1.7 3.6E-05 38.7 9.2 166 109-279 18-207 (549)
255 KOG1538 Uncharacterized conser 91.5 8.1 0.00018 36.3 13.5 89 162-262 745-844 (1081)
256 PF13176 TPR_7: Tetratricopept 91.4 0.39 8.5E-06 26.3 3.4 23 269-291 2-24 (36)
257 KOG1585 Protein required for f 91.2 7.3 0.00016 32.0 14.5 199 66-288 34-249 (308)
258 KOG2610 Uncharacterized conser 91.2 9.1 0.0002 33.0 14.8 144 145-291 115-272 (491)
259 PRK11906 transcriptional regul 91.1 11 0.00024 33.9 13.8 125 64-190 252-398 (458)
260 COG3898 Uncharacterized membra 91.1 10 0.00022 33.4 20.8 148 73-229 130-292 (531)
261 PF13428 TPR_14: Tetratricopep 91.1 0.92 2E-05 26.0 5.0 18 209-226 10-27 (44)
262 KOG0543 FKBP-type peptidyl-pro 91.0 2.9 6.2E-05 36.7 9.8 119 140-262 215-353 (397)
263 KOG0550 Molecular chaperone (D 91.0 5.8 0.00013 35.0 11.5 227 62-292 82-347 (486)
264 COG3629 DnrI DNA-binding trans 90.9 1.8 4E-05 36.3 8.3 59 99-159 155-213 (280)
265 PF08631 SPO22: Meiosis protei 90.9 9 0.00019 32.3 19.6 213 74-292 4-272 (278)
266 PF04184 ST7: ST7 protein; In 90.8 13 0.00027 33.9 14.2 78 198-275 257-340 (539)
267 KOG1920 IkappaB kinase complex 90.8 9.2 0.0002 38.4 13.8 111 167-292 942-1052(1265)
268 PF09613 HrpB1_HrpK: Bacterial 90.7 5.7 0.00012 30.3 10.1 72 172-248 18-90 (160)
269 PF13525 YfiO: Outer membrane 90.5 7.7 0.00017 31.0 17.3 162 104-285 12-197 (203)
270 PF10602 RPN7: 26S proteasome 90.4 1.4 3.1E-05 34.4 7.0 59 65-124 38-100 (177)
271 KOG1585 Protein required for f 90.2 5.8 0.00013 32.5 10.1 166 81-259 75-251 (308)
272 KOG4555 TPR repeat-containing 89.9 5 0.00011 29.5 8.7 84 175-261 54-141 (175)
273 KOG4648 Uncharacterized conser 89.8 0.84 1.8E-05 39.1 5.4 52 173-227 106-158 (536)
274 PF13929 mRNA_stabil: mRNA sta 89.5 7.4 0.00016 32.7 10.7 186 59-247 85-290 (292)
275 COG0457 NrfG FOG: TPR repeat [ 89.1 9.1 0.0002 29.8 20.0 210 79-292 38-262 (291)
276 PF13431 TPR_17: Tetratricopep 89.0 0.7 1.5E-05 24.9 3.1 24 232-255 10-33 (34)
277 PRK11906 transcriptional regul 89.0 14 0.00031 33.3 12.6 162 98-263 252-435 (458)
278 KOG2114 Vacuolar assembly/sort 88.5 9.1 0.0002 36.9 11.5 50 137-186 435-485 (933)
279 TIGR02508 type_III_yscG type I 88.3 6.8 0.00015 27.2 8.2 77 112-192 20-96 (115)
280 TIGR02508 type_III_yscG type I 88.2 5.9 0.00013 27.5 7.6 75 215-292 20-94 (115)
281 PF02284 COX5A: Cytochrome c o 88.2 3 6.5E-05 29.0 6.3 58 82-141 28-87 (108)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 4.4 9.6E-05 27.9 6.8 61 181-243 24-84 (103)
283 PF13929 mRNA_stabil: mRNA sta 87.8 14 0.0003 31.2 11.1 66 195-260 197-263 (292)
284 KOG0276 Vesicle coat complex C 87.5 9.6 0.00021 35.5 10.7 84 163-262 665-748 (794)
285 PF00515 TPR_1: Tetratricopept 87.3 1.4 2.9E-05 23.4 3.6 27 166-192 3-29 (34)
286 PF07163 Pex26: Pex26 protein; 86.9 6.1 0.00013 33.0 8.5 89 67-157 87-182 (309)
287 PF08631 SPO22: Meiosis protei 86.6 18 0.0004 30.5 19.0 191 64-259 37-270 (278)
288 PF13374 TPR_10: Tetratricopep 86.6 1.5 3.2E-05 24.4 3.7 24 237-260 4-27 (42)
289 PF13762 MNE1: Mitochondrial s 86.3 8.4 0.00018 28.9 8.3 80 65-146 41-128 (145)
290 COG4455 ImpE Protein of avirul 86.2 3.4 7.4E-05 33.2 6.5 118 166-292 3-130 (273)
291 KOG0543 FKBP-type peptidyl-pro 86.2 5.5 0.00012 35.0 8.3 92 65-159 259-352 (397)
292 KOG1941 Acetylcholine receptor 86.1 23 0.00049 31.0 11.8 54 170-223 128-185 (518)
293 PF13431 TPR_17: Tetratricopep 86.0 1.2 2.7E-05 23.9 2.9 23 131-153 11-33 (34)
294 PF13374 TPR_10: Tetratricopep 85.9 1.8 4E-05 24.0 3.9 27 165-191 3-29 (42)
295 KOG1130 Predicted G-alpha GTPa 85.2 1.3 2.9E-05 38.9 4.2 188 72-260 26-260 (639)
296 TIGR02561 HrpB1_HrpK type III 85.1 14 0.00031 27.8 9.3 50 176-230 22-74 (153)
297 PF02284 COX5A: Cytochrome c o 85.0 5.2 0.00011 27.9 6.1 60 182-243 28-87 (108)
298 PF13512 TPR_18: Tetratricopep 84.9 14 0.0003 27.6 11.7 78 173-250 19-97 (142)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 84.8 4.6 0.0001 27.8 5.7 59 215-273 22-83 (103)
300 KOG2066 Vacuolar assembly/sort 84.7 12 0.00027 35.8 10.3 153 104-266 363-536 (846)
301 PF07163 Pex26: Pex26 protein; 84.6 9.2 0.0002 32.0 8.5 86 137-223 87-181 (309)
302 PF07721 TPR_4: Tetratricopept 84.5 2.4 5.1E-05 21.1 3.4 21 239-259 5-25 (26)
303 COG0457 NrfG FOG: TPR repeat [ 84.4 17 0.00037 28.2 19.3 194 63-263 59-264 (291)
304 PF13762 MNE1: Mitochondrial s 83.9 16 0.00034 27.4 10.9 90 126-216 30-131 (145)
305 PF09477 Type_III_YscG: Bacter 83.8 13 0.00028 26.2 8.6 76 214-292 20-95 (116)
306 PF09477 Type_III_YscG: Bacter 83.3 13 0.00029 26.1 8.9 78 111-192 20-97 (116)
307 COG4455 ImpE Protein of avirul 83.2 9.1 0.0002 30.9 7.6 77 65-143 3-82 (273)
308 PF07719 TPR_2: Tetratricopept 81.8 3.3 7.1E-05 21.7 3.6 25 167-191 4-28 (34)
309 PF00515 TPR_1: Tetratricopept 81.5 2.2 4.7E-05 22.6 2.8 30 65-95 3-32 (34)
310 PF02259 FAT: FAT domain; Int 80.9 36 0.00078 29.4 13.5 60 233-292 144-210 (352)
311 COG4105 ComL DNA uptake lipopr 80.8 31 0.00067 28.6 17.0 77 65-144 37-117 (254)
312 PF10366 Vps39_1: Vacuolar sor 80.6 18 0.00038 25.6 8.0 27 166-192 41-67 (108)
313 cd08819 CARD_MDA5_2 Caspase ac 80.0 15 0.00033 24.8 6.7 67 219-287 21-87 (88)
314 KOG1464 COP9 signalosome, subu 79.4 36 0.00079 28.5 13.2 97 58-156 21-128 (440)
315 TIGR03504 FimV_Cterm FimV C-te 79.0 4.7 0.0001 23.3 3.6 25 206-230 5-29 (44)
316 PF14669 Asp_Glu_race_2: Putat 78.3 32 0.00069 27.2 11.6 53 240-292 137-207 (233)
317 KOG2114 Vacuolar assembly/sort 77.7 74 0.0016 31.2 14.2 174 65-262 336-517 (933)
318 PF11207 DUF2989: Protein of u 77.0 24 0.00052 28.1 8.2 41 214-254 154-197 (203)
319 KOG1941 Acetylcholine receptor 76.9 39 0.00085 29.6 9.9 159 134-292 44-232 (518)
320 KOG0276 Vesicle coat complex C 76.9 23 0.00051 33.1 9.0 99 176-292 649-747 (794)
321 COG2909 MalT ATP-dependent tra 76.7 81 0.0017 31.1 14.8 197 65-263 459-687 (894)
322 PF11846 DUF3366: Domain of un 76.4 11 0.00025 29.7 6.6 51 109-159 120-170 (193)
323 PF11207 DUF2989: Protein of u 75.9 23 0.00051 28.2 7.9 69 114-184 123-198 (203)
324 PF13181 TPR_8: Tetratricopept 74.7 7.5 0.00016 20.3 3.7 24 237-260 3-26 (34)
325 PRK09687 putative lyase; Provi 74.5 52 0.0011 27.8 20.7 218 58-292 32-260 (280)
326 PF04762 IKI3: IKI3 family; I 74.3 94 0.002 31.4 13.4 136 53-192 678-842 (928)
327 PF04097 Nic96: Nup93/Nic96; 73.7 86 0.0019 30.0 12.9 218 70-301 265-535 (613)
328 COG5159 RPN6 26S proteasome re 72.6 48 0.001 28.1 9.1 116 174-290 13-149 (421)
329 TIGR02561 HrpB1_HrpK type III 72.0 40 0.00087 25.4 11.4 47 75-124 22-71 (153)
330 KOG4234 TPR repeat-containing 71.5 26 0.00057 28.0 7.1 88 174-265 105-198 (271)
331 COG2909 MalT ATP-dependent tra 70.9 1.1E+02 0.0025 30.1 16.8 217 70-292 367-644 (894)
332 PF11846 DUF3366: Domain of un 70.7 15 0.00032 29.0 5.9 35 195-229 139-173 (193)
333 KOG0686 COP9 signalosome, subu 70.6 79 0.0017 28.2 11.3 154 133-292 150-330 (466)
334 PF07035 Mic1: Colon cancer-as 70.6 47 0.001 25.6 14.7 55 238-292 92-146 (167)
335 PF11848 DUF3368: Domain of un 70.6 16 0.00035 21.4 4.6 33 211-243 13-45 (48)
336 PF10366 Vps39_1: Vacuolar sor 70.2 15 0.00033 26.0 5.2 25 268-292 41-65 (108)
337 KOG1258 mRNA processing protei 70.0 97 0.0021 29.0 13.3 29 132-160 296-324 (577)
338 PHA02875 ankyrin repeat protei 69.4 84 0.0018 28.1 12.9 20 246-265 210-229 (413)
339 COG3947 Response regulator con 68.8 16 0.00034 30.9 5.7 75 81-158 104-191 (361)
340 PHA02875 ankyrin repeat protei 68.7 87 0.0019 28.0 11.2 213 70-304 6-231 (413)
341 PF02259 FAT: FAT domain; Int 68.4 78 0.0017 27.3 15.0 63 200-262 146-211 (352)
342 PF07064 RIC1: RIC1; InterPro 67.9 71 0.0015 26.7 12.9 157 64-229 83-249 (258)
343 PRK10941 hypothetical protein; 67.9 60 0.0013 27.3 9.1 78 66-144 184-262 (269)
344 KOG1550 Extracellular protein 67.7 1.1E+02 0.0024 28.8 12.2 175 113-292 228-423 (552)
345 KOG0991 Replication factor C, 67.7 61 0.0013 26.7 8.5 35 264-301 237-271 (333)
346 COG3947 Response regulator con 67.4 18 0.00039 30.6 5.7 57 135-191 281-340 (361)
347 PRK09687 putative lyase; Provi 67.3 77 0.0017 26.8 23.0 199 62-276 67-277 (280)
348 PF13934 ELYS: Nuclear pore co 67.3 61 0.0013 26.4 8.9 22 139-160 114-135 (226)
349 TIGR03504 FimV_Cterm FimV C-te 67.2 7.7 0.00017 22.4 2.6 20 273-292 6-25 (44)
350 COG2976 Uncharacterized protei 66.4 63 0.0014 25.7 8.2 88 104-192 96-187 (207)
351 KOG4077 Cytochrome c oxidase, 65.8 27 0.0006 25.5 5.7 36 93-128 80-115 (149)
352 KOG2034 Vacuolar sorting prote 65.5 1.5E+02 0.0032 29.4 12.3 146 136-292 392-556 (911)
353 COG4785 NlpI Lipoprotein NlpI, 64.6 77 0.0017 25.8 12.9 26 66-92 102-127 (297)
354 PF09797 NatB_MDM20: N-acetylt 64.1 39 0.00083 29.8 7.8 60 101-162 184-246 (365)
355 COG4105 ComL DNA uptake lipopr 63.7 85 0.0018 26.1 16.2 53 240-292 172-230 (254)
356 KOG4077 Cytochrome c oxidase, 63.0 48 0.001 24.3 6.4 59 183-243 68-126 (149)
357 PF08311 Mad3_BUB1_I: Mad3/BUB 61.9 60 0.0013 23.7 8.3 43 218-260 81-124 (126)
358 PF11768 DUF3312: Protein of u 61.5 39 0.00084 31.3 7.2 26 66-92 411-436 (545)
359 PF13174 TPR_6: Tetratricopept 61.2 14 0.0003 18.9 2.9 22 208-229 8-29 (33)
360 PRK10564 maltose regulon perip 61.2 18 0.00039 30.7 4.7 45 195-239 251-296 (303)
361 PF10579 Rapsyn_N: Rapsyn N-te 60.5 33 0.00071 22.7 4.9 19 135-153 45-63 (80)
362 PF10579 Rapsyn_N: Rapsyn N-te 60.4 31 0.00067 22.8 4.8 44 213-256 19-64 (80)
363 KOG2908 26S proteasome regulat 59.7 23 0.00049 30.6 5.1 55 208-262 83-142 (380)
364 smart00028 TPR Tetratricopepti 59.7 17 0.00037 17.5 3.1 24 167-190 4-27 (34)
365 KOG0890 Protein kinase of the 59.6 2.4E+02 0.0051 31.5 13.0 151 102-259 1388-1542(2382)
366 PF10475 DUF2450: Protein of u 59.5 61 0.0013 27.6 7.9 109 139-255 104-217 (291)
367 KOG1586 Protein required for f 59.5 1E+02 0.0022 25.5 10.2 36 203-238 157-192 (288)
368 COG5108 RPO41 Mitochondrial DN 59.2 57 0.0012 31.1 7.8 43 138-180 33-81 (1117)
369 PF14689 SPOB_a: Sensor_kinase 58.5 11 0.00024 23.6 2.4 22 271-292 28-49 (62)
370 KOG0403 Neoplastic transformat 57.4 1.1E+02 0.0024 27.8 9.0 26 66-92 348-373 (645)
371 PF11817 Foie-gras_1: Foie gra 57.3 42 0.00092 27.7 6.4 53 206-258 184-241 (247)
372 PF02847 MA3: MA3 domain; Int 57.2 21 0.00046 25.1 4.1 21 140-160 9-29 (113)
373 KOG2396 HAT (Half-A-TPR) repea 56.2 78 0.0017 29.1 8.0 45 93-137 101-145 (568)
374 PF12926 MOZART2: Mitotic-spin 56.1 60 0.0013 21.9 6.7 42 221-262 29-70 (88)
375 PF11848 DUF3368: Domain of un 55.1 33 0.0007 20.1 3.9 33 108-141 13-45 (48)
376 KOG2659 LisH motif-containing 54.8 1E+02 0.0022 25.2 7.8 62 130-191 23-91 (228)
377 cd08326 CARD_CASP9 Caspase act 54.7 61 0.0013 21.7 5.7 63 219-285 18-80 (84)
378 PF14669 Asp_Glu_race_2: Putat 53.5 1.1E+02 0.0025 24.3 13.9 100 152-262 95-208 (233)
379 PF11768 DUF3312: Protein of u 53.5 76 0.0017 29.5 7.7 109 138-267 413-526 (545)
380 PF14689 SPOB_a: Sensor_kinase 53.3 19 0.00042 22.5 2.9 23 205-227 28-50 (62)
381 KOG2908 26S proteasome regulat 53.3 1.2E+02 0.0027 26.3 8.4 83 68-152 80-176 (380)
382 PRK10564 maltose regulon perip 53.0 20 0.00043 30.4 3.7 43 163-206 255-298 (303)
383 KOG0687 26S proteasome regulat 52.6 1.6E+02 0.0034 25.6 11.6 96 165-262 105-208 (393)
384 KOG1258 mRNA processing protei 52.4 2.1E+02 0.0045 27.0 15.6 183 60-249 294-489 (577)
385 COG4649 Uncharacterized protei 52.4 1.1E+02 0.0025 23.9 12.3 127 61-192 57-195 (221)
386 PF03745 DUF309: Domain of unk 52.0 53 0.0011 20.5 4.7 14 213-226 12-25 (62)
387 KOG4567 GTPase-activating prot 51.5 1.6E+02 0.0034 25.4 9.5 79 184-268 263-351 (370)
388 KOG4648 Uncharacterized conser 51.2 47 0.001 28.9 5.6 53 71-124 105-158 (536)
389 PF10345 Cohesin_load: Cohesin 51.1 2.3E+02 0.005 27.1 18.4 84 75-160 373-480 (608)
390 COG1747 Uncharacterized N-term 50.6 2.1E+02 0.0046 26.6 18.4 177 93-278 62-251 (711)
391 PF09868 DUF2095: Uncharacteri 50.6 60 0.0013 23.1 5.1 41 205-246 66-106 (128)
392 smart00544 MA3 Domain in DAP-5 50.6 85 0.0018 22.0 7.7 22 170-191 8-29 (113)
393 PF11838 ERAP1_C: ERAP1-like C 50.5 1.6E+02 0.0035 25.1 13.5 77 216-292 146-227 (324)
394 KOG4234 TPR repeat-containing 50.5 1.2E+02 0.0027 24.4 7.4 84 209-292 104-194 (271)
395 PRK15180 Vi polysaccharide bio 50.4 1.1E+02 0.0025 28.0 8.0 116 109-229 301-420 (831)
396 KOG0550 Molecular chaperone (D 49.8 2E+02 0.0043 26.0 15.5 113 79-192 218-349 (486)
397 COG0735 Fur Fe2+/Zn2+ uptake r 48.6 1.1E+02 0.0025 22.8 7.3 63 186-250 8-70 (145)
398 KOG2063 Vacuolar assembly/sort 48.4 2.2E+02 0.0049 28.5 10.4 113 135-248 506-639 (877)
399 PF04190 DUF410: Protein of un 48.0 1.6E+02 0.0035 24.5 12.8 59 234-292 89-167 (260)
400 KOG3807 Predicted membrane pro 47.8 1.9E+02 0.0041 25.2 10.3 55 205-259 280-335 (556)
401 PF04090 RNA_pol_I_TF: RNA pol 47.6 76 0.0017 25.3 6.0 61 165-226 42-102 (199)
402 PF12796 Ank_2: Ankyrin repeat 47.4 69 0.0015 21.0 5.3 13 145-157 6-18 (89)
403 PF09454 Vps23_core: Vps23 cor 46.0 59 0.0013 20.6 4.2 51 196-247 4-54 (65)
404 cd07229 Pat_TGL3_like Triacylg 45.9 1.5E+02 0.0033 26.5 8.2 68 221-288 172-259 (391)
405 PF07575 Nucleopor_Nup85: Nup8 45.6 17 0.00037 34.2 2.6 27 278-306 507-533 (566)
406 smart00386 HAT HAT (Half-A-TPR 45.4 40 0.00087 16.8 3.1 13 112-124 2-14 (33)
407 PF12793 SgrR_N: Sugar transpo 45.1 1.1E+02 0.0025 21.9 7.9 72 186-259 5-94 (115)
408 KOG1550 Extracellular protein 44.8 2.8E+02 0.006 26.2 13.3 152 75-232 261-429 (552)
409 PRK11639 zinc uptake transcrip 44.7 1.4E+02 0.0031 23.0 7.1 14 179-192 40-53 (169)
410 PF07575 Nucleopor_Nup85: Nup8 44.5 56 0.0012 30.9 5.8 54 135-188 407-462 (566)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 44.3 1.2E+02 0.0027 22.0 8.8 42 115-157 81-123 (126)
412 PF02847 MA3: MA3 domain; Int 44.0 1.1E+02 0.0024 21.4 6.2 20 104-123 9-28 (113)
413 cd00280 TRFH Telomeric Repeat 43.7 1.6E+02 0.0035 23.2 7.3 21 171-191 118-138 (200)
414 PF02184 HAT: HAT (Half-A-TPR) 43.3 41 0.00089 17.9 2.7 24 79-102 2-25 (32)
415 cd08819 CARD_MDA5_2 Caspase ac 43.2 1E+02 0.0023 20.9 6.4 38 145-183 48-85 (88)
416 COG4003 Uncharacterized protei 43.1 76 0.0017 21.1 4.4 35 205-240 36-70 (98)
417 PF11663 Toxin_YhaV: Toxin wit 42.9 21 0.00046 26.3 2.1 33 210-244 105-137 (140)
418 KOG4507 Uncharacterized conser 42.6 1.9E+02 0.0041 27.4 8.4 110 150-263 590-704 (886)
419 PF10475 DUF2450: Protein of u 42.5 2.1E+02 0.0046 24.3 8.7 109 167-287 101-218 (291)
420 cd07153 Fur_like Ferric uptake 42.2 88 0.0019 22.0 5.4 46 206-251 6-51 (116)
421 KOG1586 Protein required for f 41.7 1.6E+02 0.0036 24.3 7.0 16 277-292 165-180 (288)
422 cd08332 CARD_CASP2 Caspase act 41.6 1.1E+02 0.0024 20.7 6.4 60 219-282 22-81 (90)
423 cd08326 CARD_CASP9 Caspase act 41.2 1.1E+02 0.0024 20.5 5.5 39 144-182 41-79 (84)
424 TIGR03581 EF_0839 conserved hy 41.0 55 0.0012 26.4 4.3 83 179-262 136-235 (236)
425 cd00280 TRFH Telomeric Repeat 40.7 71 0.0015 25.1 4.7 48 113-160 85-138 (200)
426 PRK14700 recombination factor 40.1 2.3E+02 0.0051 24.3 8.1 63 170-233 129-199 (300)
427 KOG2297 Predicted translation 39.9 2.5E+02 0.0054 24.3 8.7 18 267-284 322-339 (412)
428 PF11817 Foie-gras_1: Foie gra 39.6 1.2E+02 0.0027 25.0 6.5 53 138-190 183-244 (247)
429 PF10255 Paf67: RNA polymerase 39.4 1.2E+02 0.0026 27.2 6.7 56 135-190 124-190 (404)
430 COG2178 Predicted RNA-binding 39.2 2E+02 0.0043 22.9 8.0 57 136-192 32-97 (204)
431 COG2178 Predicted RNA-binding 38.7 1.3E+02 0.0027 24.0 5.9 29 63-92 29-57 (204)
432 smart00638 LPD_N Lipoprotein N 38.7 3.4E+02 0.0075 25.6 19.5 194 58-258 305-519 (574)
433 PF12862 Apc5: Anaphase-promot 38.7 1.2E+02 0.0027 20.5 6.0 18 74-92 9-26 (94)
434 KOG2300 Uncharacterized conser 38.7 3.3E+02 0.0071 25.3 13.1 144 149-292 298-471 (629)
435 PF01475 FUR: Ferric uptake re 38.7 99 0.0021 22.0 5.2 47 205-251 12-58 (120)
436 KOG1130 Predicted G-alpha GTPa 38.6 28 0.0006 31.1 2.5 126 135-260 197-340 (639)
437 PRK15180 Vi polysaccharide bio 38.1 1.5E+02 0.0032 27.3 6.9 120 67-191 293-418 (831)
438 cd07153 Fur_like Ferric uptake 37.4 72 0.0016 22.5 4.3 48 169-217 5-52 (116)
439 PF04124 Dor1: Dor1-like famil 36.2 2.2E+02 0.0048 24.8 7.9 35 68-103 111-148 (338)
440 KOG1464 COP9 signalosome, subu 35.9 2.7E+02 0.0059 23.6 11.5 154 66-221 68-252 (440)
441 KOG0687 26S proteasome regulat 35.3 3.1E+02 0.0066 24.0 10.7 131 93-228 66-209 (393)
442 PF12862 Apc5: Anaphase-promot 35.2 1.4E+02 0.0031 20.1 6.6 19 244-262 50-68 (94)
443 KOG2396 HAT (Half-A-TPR) repea 34.9 3.8E+02 0.0082 24.9 14.1 95 196-292 455-556 (568)
444 PF10363 DUF2435: Protein of u 34.5 1.5E+02 0.0032 20.2 5.2 35 179-217 40-74 (92)
445 PF04034 DUF367: Domain of unk 34.4 1.9E+02 0.004 21.2 6.5 62 128-189 61-124 (127)
446 cd08323 CARD_APAF1 Caspase act 34.1 1.5E+02 0.0032 20.0 6.5 64 219-286 16-79 (86)
447 KOG2063 Vacuolar assembly/sort 34.1 1.9E+02 0.0041 29.0 7.5 111 167-278 507-638 (877)
448 KOG4334 Uncharacterized conser 33.5 21 0.00046 32.2 1.1 98 147-248 461-573 (650)
449 KOG0292 Vesicle coat complex C 33.5 4.8E+02 0.01 26.3 9.8 129 141-292 651-779 (1202)
450 PF11123 DNA_Packaging_2: DNA 32.9 1.4E+02 0.0031 19.5 4.4 13 280-292 59-71 (82)
451 PF14853 Fis1_TPR_C: Fis1 C-te 32.7 1.2E+02 0.0025 18.3 5.1 29 70-99 8-36 (53)
452 PF15297 CKAP2_C: Cytoskeleton 32.6 2.2E+02 0.0047 25.0 6.8 70 75-145 114-187 (353)
453 PF10255 Paf67: RNA polymerase 32.5 3.4E+02 0.0075 24.4 8.4 90 138-227 80-191 (404)
454 KOG0989 Replication factor C, 32.5 2.4E+02 0.0052 24.4 6.9 58 184-243 194-251 (346)
455 PF06552 TOM20_plant: Plant sp 32.4 1.5E+02 0.0033 23.3 5.4 64 180-248 51-126 (186)
456 PRK06645 DNA polymerase III su 32.4 2.9E+02 0.0062 25.8 8.2 44 182-227 191-234 (507)
457 PF08424 NRDE-2: NRDE-2, neces 32.3 3.3E+02 0.0072 23.5 11.3 118 80-200 47-190 (321)
458 COG2976 Uncharacterized protei 31.6 2.7E+02 0.0059 22.3 12.8 122 166-298 56-189 (207)
459 PHA03100 ankyrin repeat protei 31.3 4E+02 0.0088 24.2 12.2 20 139-158 144-165 (480)
460 COG5108 RPO41 Mitochondrial DN 31.3 2.3E+02 0.005 27.4 7.2 71 68-143 33-113 (1117)
461 PRK09857 putative transposase; 31.1 3E+02 0.0065 23.5 7.6 64 169-234 211-274 (292)
462 PRK11639 zinc uptake transcrip 30.1 2.6E+02 0.0056 21.5 7.1 61 190-252 17-77 (169)
463 PF09670 Cas_Cas02710: CRISPR- 29.8 4E+02 0.0087 23.7 9.9 55 106-162 140-198 (379)
464 smart00544 MA3 Domain in DAP-5 29.0 2E+02 0.0044 20.0 9.2 25 138-162 7-31 (113)
465 KOG3807 Predicted membrane pro 29.0 3.3E+02 0.0072 23.8 7.3 47 145-191 287-338 (556)
466 PF11838 ERAP1_C: ERAP1-like C 28.6 3.7E+02 0.0079 22.8 11.6 145 113-262 146-306 (324)
467 KOG2062 26S proteasome regulat 28.6 5.8E+02 0.013 25.1 10.2 116 173-292 510-632 (929)
468 COG5210 GTPase-activating prot 28.5 2.3E+02 0.005 26.3 7.0 41 221-261 363-403 (496)
469 KOG0376 Serine-threonine phosp 28.4 1.2E+02 0.0026 27.6 4.9 112 70-218 11-123 (476)
470 PF09670 Cas_Cas02710: CRISPR- 28.3 4.3E+02 0.0093 23.5 11.0 53 175-229 142-198 (379)
471 COG0735 Fur Fe2+/Zn2+ uptake r 28.2 2.6E+02 0.0056 20.9 6.5 22 139-160 26-47 (145)
472 PF11663 Toxin_YhaV: Toxin wit 28.1 48 0.001 24.5 2.0 24 278-303 107-130 (140)
473 PF08424 NRDE-2: NRDE-2, neces 28.1 3.9E+02 0.0085 23.0 13.5 137 93-231 15-185 (321)
474 smart00804 TAP_C C-terminal do 28.1 54 0.0012 20.6 2.0 24 177-200 38-61 (63)
475 PF02607 B12-binding_2: B12 bi 27.8 92 0.002 20.1 3.3 30 214-243 15-44 (79)
476 cd08789 CARD_IPS-1_RIG-I Caspa 27.8 1.9E+02 0.0041 19.3 5.4 38 247-285 44-81 (84)
477 PF01475 FUR: Ferric uptake re 27.4 80 0.0017 22.5 3.2 48 168-216 11-58 (120)
478 PF13934 ELYS: Nuclear pore co 27.3 3.4E+02 0.0074 22.1 11.1 59 126-190 72-134 (226)
479 cd08332 CARD_CASP2 Caspase act 27.0 2.1E+02 0.0045 19.4 5.6 35 145-179 46-80 (90)
480 COG5159 RPN6 26S proteasome re 26.6 4.1E+02 0.009 22.8 8.9 118 106-225 12-150 (421)
481 PF07443 HARP: HepA-related pr 26.3 40 0.00088 20.5 1.1 34 178-212 6-39 (55)
482 cd08780 Death_TRADD Death Doma 25.8 1.8E+02 0.0038 19.8 4.1 15 201-215 66-80 (90)
483 PRK14956 DNA polymerase III su 25.6 3.7E+02 0.0081 24.9 7.5 45 182-228 184-228 (484)
484 smart00777 Mad3_BUB1_I Mad3/BU 25.5 2.7E+02 0.0059 20.3 8.1 43 217-259 80-123 (125)
485 PF04190 DUF410: Protein of un 25.5 4E+02 0.0087 22.2 13.6 82 132-229 89-170 (260)
486 KOG1839 Uncharacterized protei 25.2 5.2E+02 0.011 27.1 8.9 24 163-186 972-995 (1236)
487 KOG1524 WD40 repeat-containing 25.2 5.4E+02 0.012 24.2 8.2 58 62-124 572-629 (737)
488 cd08330 CARD_ASC_NALP1 Caspase 25.2 2.1E+02 0.0046 18.9 6.1 58 217-278 15-72 (82)
489 PF12926 MOZART2: Mitotic-spin 25.1 2.3E+02 0.0049 19.2 6.7 42 118-160 29-70 (88)
490 PF09454 Vps23_core: Vps23 cor 25.1 53 0.0011 20.8 1.6 29 63-92 8-36 (65)
491 PRK02287 hypothetical protein; 24.6 3.4E+02 0.0073 21.1 6.7 61 131-191 105-167 (171)
492 KOG3677 RNA polymerase I-assoc 24.3 2.3E+02 0.005 25.6 5.7 86 71-159 209-298 (525)
493 PF07678 A2M_comp: A-macroglob 24.0 4.1E+02 0.0089 21.8 7.4 43 150-192 116-160 (246)
494 PRK08691 DNA polymerase III su 23.7 5E+02 0.011 25.5 8.2 46 181-228 181-226 (709)
495 KOG2214 Predicted esterase of 23.7 3.2E+02 0.0069 25.4 6.6 128 168-305 212-352 (543)
496 PF08542 Rep_fac_C: Replicatio 23.6 1.2E+02 0.0025 20.2 3.2 44 203-248 8-51 (89)
497 PRK07914 hypothetical protein; 23.5 4.7E+02 0.01 22.5 7.7 36 188-226 139-174 (320)
498 PF10345 Cohesin_load: Cohesin 23.4 6.6E+02 0.014 24.0 14.2 163 98-262 60-252 (608)
499 TIGR03581 EF_0839 conserved hy 23.3 3.8E+02 0.0082 21.8 6.2 78 149-227 137-235 (236)
500 TIGR02710 CRISPR-associated pr 23.3 5.4E+02 0.012 23.0 9.5 54 171-225 137-196 (380)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-49 Score=371.91 Aligned_cols=254 Identities=24% Similarity=0.448 Sum_probs=245.2
Q ss_pred hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178 53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS 130 (311)
Q Consensus 53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 130 (311)
..|++|+.||.++||++|.+|++.| ++++|+++|++|.+ ..||..||+.++++|++.|+.+.+.+++..+. +.|+.
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~-~~g~~ 256 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL-KTGVV 256 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH-HhCCC
Confidence 5578899999999999999999999 99999999999987 88999999999999999999999999999999 89999
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 131 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
+|..+||+||++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|.++|++|.+ .|+.||..||++++.+|
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIF 335 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
++.|++++|.+++.+|.+.|+.||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++|.++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCceeEeeccC
Q 037178 291 KMMGCEEGFIPDVITVVTVLP 311 (311)
Q Consensus 291 ~m~~~~~g~~P~~~t~~~li~ 311 (311)
+| .+.|+.||..||+++|+
T Consensus 416 ~M--~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 416 RM--IAEGVAPNHVTFLAVLS 434 (697)
T ss_pred HH--HHhCCCCCHHHHHHHHH
Confidence 99 89999999999998863
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-47 Score=364.37 Aligned_cols=254 Identities=29% Similarity=0.457 Sum_probs=249.3
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC
Q 037178 52 LSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQF 129 (311)
Q Consensus 52 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~ 129 (311)
+..|++|+.||+++||++|.+|++.| ++++|+++|++|.. +.||..||+.++++|+..+++..+.+++..|. +.|+
T Consensus 141 ~~~f~~m~~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~-~~g~ 218 (857)
T PLN03077 141 WYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV-RFGF 218 (857)
T ss_pred HHHHhcCCCCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH-HcCC
Confidence 36688999999999999999999999 99999999999987 99999999999999999999999999999999 9999
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~ 209 (311)
.||..+||+||.+|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+ .|+.||..||+.+|.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISA 297 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL 289 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~ 289 (311)
|++.|+++.|.+++..|.+.|+.||..+||+||++|++.|++++|.++|++|.+||+++||+||.+|++.|++++|.++|
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeEeecc
Q 037178 290 IKMMGCEEGFIPDVITVVTVL 310 (311)
Q Consensus 290 ~~m~~~~~g~~P~~~t~~~li 310 (311)
++| .+.|+.||..||+++|
T Consensus 378 ~~M--~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 378 ALM--EQDNVSPDEITIASVL 396 (857)
T ss_pred HHH--HHhCCCCCceeHHHHH
Confidence 999 8999999999999876
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-46 Score=360.07 Aligned_cols=247 Identities=16% Similarity=0.218 Sum_probs=225.6
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhh--cCCCchhhH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSAS--TQFSNDFII 135 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~g~~~~~~~ 135 (311)
.||.++||++|.+|++.| ++++|+++|++|.. +.||..||+.+|.+|++.|++++|.++|++|. . .|+.||..+
T Consensus 504 ~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~-~~~~gi~PD~vT 581 (1060)
T PLN03218 504 EANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-AETHPIDPDHIT 581 (1060)
T ss_pred CCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhcCCCCCcHHH
Confidence 688889999999999999 99999999999877 88899999999999999999999999999987 4 578899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKT----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG 211 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~ 211 (311)
|++||.+|++.|++++|.++|+.|.+ |+..+||++|.+|++.|++++|.++|++|.+ .|+.||..||+++|++|+
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998874 5678999999999999999999999999998 999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCCcchHHH
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
+.|++++|.+++++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.++||+||.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 5899999999999999999999999
Q ss_pred HHHhhhhccCCCCCCceeEeeccC
Q 037178 288 LLIKMMGCEEGFIPDVITVVTVLP 311 (311)
Q Consensus 288 l~~~m~~~~~g~~P~~~t~~~li~ 311 (311)
+|++| .+.|+.||..||++||+
T Consensus 741 lf~eM--~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 741 VLSEM--KRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHH--HHcCCCCCHHHHHHHHH
Confidence 99999 88999999999998863
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-46 Score=359.32 Aligned_cols=253 Identities=26% Similarity=0.469 Sum_probs=247.5
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC
Q 037178 52 LSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQF 129 (311)
Q Consensus 52 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~ 129 (311)
...|++|+.||.++||++|.+|++.| ++++|+++|++|.+ +.||..||+.++.+|++.|+++.+.+++..|. +.|+
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~-~~g~ 319 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENG-ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-KTGF 319 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-HhCC
Confidence 47789999999999999999999999 99999999999998 99999999999999999999999999999999 9999
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~ 209 (311)
.||..+||+||.+|++.|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+ .|+.||..||++++.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSA 398 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL 289 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~ 289 (311)
|++.|++++|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|.++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeEeecc
Q 037178 290 IKMMGCEEGFIPDVITVVTVL 310 (311)
Q Consensus 290 ~~m~~~~~g~~P~~~t~~~li 310 (311)
++| .. +++||..||+++|
T Consensus 479 ~~m--~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 479 RQM--LL-TLKPNSVTLIAAL 496 (857)
T ss_pred HHH--Hh-CCCCCHhHHHHHH
Confidence 999 54 6999999998876
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-45 Score=351.69 Aligned_cols=253 Identities=13% Similarity=0.166 Sum_probs=128.1
Q ss_pred hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178 53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS 130 (311)
Q Consensus 53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 130 (311)
..+..|+.||..+||.+|.+|++.| ++++|.++|++|.+ ..||..+|+++|.+|++.|++++|.++|++|. +.|+.
T Consensus 427 ~lf~~M~~pd~~Tyn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~ 504 (1060)
T PLN03218 427 RFAKLIRNPTLSTFNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVE 504 (1060)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCC
Confidence 3445555555555555555555555 55555555555554 45555555555555555555555555555555 45555
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCCCCCcchHHH
Q 037178 131 NDFIINTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSD-TELKPDNFTFPC 205 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~~t~~~ 205 (311)
||..+|++||.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|... .|+.||.+||++
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 555555555555555555555555555553 245555555555555555555555555555321 244455555555
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCC
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSENGF 281 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~ 281 (311)
+|.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555444444555555555555554444444444442 344444444444444444
Q ss_pred cchHHHHHHhhhhccCCCCCCceeEeec
Q 037178 282 SCESFDLLIKMMGCEEGFIPDVITVVTV 309 (311)
Q Consensus 282 ~~~a~~l~~~m~~~~~g~~P~~~t~~~l 309 (311)
+++|.+++++| .+.|+.||..||++|
T Consensus 665 ~eeA~~l~~eM--~k~G~~pd~~tynsL 690 (1060)
T PLN03218 665 LDKAFEILQDA--RKQGIKLGTVSYSSL 690 (1060)
T ss_pred HHHHHHHHHHH--HHcCCCCCHHHHHHH
Confidence 44444444444 344444444444443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=341.09 Aligned_cols=250 Identities=18% Similarity=0.258 Sum_probs=228.2
Q ss_pred HHHHHhhcCccc--hhhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhH
Q 037178 40 LRSIFKEKSSLS--LSAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEI 115 (311)
Q Consensus 40 ~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~ 115 (311)
+.+.+.+...+. ...|+.|+.+|+++||++|.+|++.| ++++|+++|++|.+ +.||..||++++++|++.|++++
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g-~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG-YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 344444444333 47789999999999999999999999 99999999999987 89999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178 116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTE 195 (311)
Q Consensus 116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~ 195 (311)
|.++++.|. +.|+.||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|.++|++|.+ .|
T Consensus 344 a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g 421 (697)
T PLN03081 344 AKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA-EG 421 (697)
T ss_pred HHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCcchHHHHHHHHhccCChhhHHHHHHHHHH-hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCChhhHHHHH
Q 037178 196 LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK-MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP-ERNLVSWNSII 273 (311)
Q Consensus 196 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~y~~li 273 (311)
+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. +||..+|++|+
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll 501 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999986 5999999999999999999999999999999997 47777777777
Q ss_pred HHHHhCCCcchHHHHHHhh
Q 037178 274 CGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 274 ~~~~~~g~~~~a~~l~~~m 292 (311)
.+|+..|+++.|.++++++
T Consensus 502 ~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHcCCcHHHHHHHHHH
Confidence 7666666666666655555
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.3e-18 Score=154.22 Aligned_cols=234 Identities=14% Similarity=0.013 Sum_probs=192.0
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch----hhHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND----FIINTR 138 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~ 138 (311)
..|..+...|.+.| ++++|..+|+++.+ .+.+..++..++..+...|++++|.+.++.+. +.+..+. ...+..
T Consensus 108 ~~~~~La~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 108 LALQELGQDYLKAG-LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHH
Confidence 45788888999999 99999999999988 56677889999999999999999999999988 5442221 224566
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|.++|+++.. .+......++..+..++++.|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCC
Confidence 77788899999999999998763 3 566788889999999999999999999976 3322224568889999999999
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHh---CCCcchHHHHHH
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGFSE---NGFSCESFDLLI 290 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~---~g~~~~a~~l~~ 290 (311)
+++|...++.+.+.. |+...+..+...|.+.|++++|.++++++.+ |+...++.++..++. .|+.+++..+++
T Consensus 265 ~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 265 EAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 999999999988764 5666778899999999999999999998774 888889988888775 568999999999
Q ss_pred hhhhccCCCCCCce
Q 037178 291 KMMGCEEGFIPDVI 304 (311)
Q Consensus 291 ~m~~~~~g~~P~~~ 304 (311)
+| .+.+++|+..
T Consensus 343 ~~--~~~~~~~~p~ 354 (389)
T PRK11788 343 DL--VGEQLKRKPR 354 (389)
T ss_pred HH--HHHHHhCCCC
Confidence 99 7878887764
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=9.9e-18 Score=148.62 Aligned_cols=239 Identities=10% Similarity=-0.067 Sum_probs=197.9
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccC-C-CC---hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHN-A-DL---KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII 135 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~-~-~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 135 (311)
.+..+|..+...+.+.| ++++|..+++.+... . ++ ...+..+...+...|+++.|..+|+.+. +.. +.+..+
T Consensus 67 ~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~-~~~~~~ 143 (389)
T PRK11788 67 ETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV-DEG-DFAEGA 143 (389)
T ss_pred ccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCC-cchHHH
Confidence 34567899999999999 999999999998872 1 11 2467888899999999999999999998 543 457788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCC--C------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHH
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKTR--N------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCV 206 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~--~------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~l 206 (311)
++.++..|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|++++|...|+++.+ . .|+ ...+..+
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~l 220 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA-A--DPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-H--CcCCHHHHHHH
Confidence 999999999999999999999998642 1 12466788888999999999999999976 3 344 4577788
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCcch
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGFSENGFSCE 284 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~ 284 (311)
...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+ |+...++.++..+.+.|++++
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHH
Confidence 899999999999999999998775333357789999999999999999999999874 777778899999999999999
Q ss_pred HHHHHHhhhhccCCCCCCceeEeec
Q 037178 285 SFDLLIKMMGCEEGFIPDVITVVTV 309 (311)
Q Consensus 285 a~~l~~~m~~~~~g~~P~~~t~~~l 309 (311)
|.++++++ .+. .|+..+++.+
T Consensus 301 A~~~l~~~--l~~--~P~~~~~~~l 321 (389)
T PRK11788 301 AQALLREQ--LRR--HPSLRGFHRL 321 (389)
T ss_pred HHHHHHHH--HHh--CcCHHHHHHH
Confidence 99999998 443 6887766543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.68 E-value=1.3e-14 Score=141.23 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=83.4
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..+...+.+.| ++++|...|+++.+ .+.+...+..+...+...|++++|..+++.+. +.. +.+..++..+...+
T Consensus 603 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 603 AWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL-ELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHH
Confidence 3444444444444 44444444444443 22233334444444444444444444444443 221 22233444444444
Q ss_pred HhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178 144 SLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 220 (311)
.+.|++++|.++++.+.+ .+...+..+...+.+.|++++|.+.|+++.. ..|+..++..+..++.+.|++++|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHH
Confidence 444444444444444432 1333444444444455555555555554433 2233344444444444555555555
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+.++.+.+.. +.+..+++.+...|.+.|+.++|.++|+++.
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5444444432 3344445555555555555555555555443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.67 E-value=2.3e-14 Score=139.57 Aligned_cols=225 Identities=11% Similarity=0.004 Sum_probs=118.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+...|+.+...+...| ++++|...|+++.+ .+.+...+..+...+...|++++|.+.++.+. +.+ +.+..++..+.
T Consensus 464 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 464 NASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL-TID-PKNLRAILALA 540 (899)
T ss_pred CcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-cCcHHHHHHHH
Confidence 4445666666666666 66666666666665 33444455555566666666666666666665 332 33445555555
Q ss_pred HHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
..+.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++++.. . ...+..+|..+..++...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD-A-APDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHH
Confidence 566566666666666555431 2334445555555555555555555555543 1 1223344555555555555555
Q ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+|...++.+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554443 23344455555555555555555555555442 12334444444444444444444444444
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.56 E-value=7.7e-15 Score=89.64 Aligned_cols=50 Identities=26% Similarity=0.602 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
||+++||++|++|++.|++++|+++|++|.+ .|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 5777777777777777777777777777777 7777777777777777764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.52 E-value=5.5e-12 Score=118.51 Aligned_cols=219 Identities=7% Similarity=-0.094 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
|..+...+.+.| ++++|...+++... .+.+...+..+...+...|+.++|...++.+. ..... +...+..+ ..+.
T Consensus 113 ~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~-~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 113 VLLVASVLLKSK-QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA-QEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCCC-CHHHHHHH-HHHH
Confidence 444444444444 44444444444444 22233344444444444444444444444443 22111 11111111 1234
Q ss_pred hcCChhHHHHHHHhcCCC----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh-
Q 037178 145 LCGFPLDSRRVFDSLKTR----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF- 218 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~- 218 (311)
+.|++++|...++.+.+. +...+..+..++.+.|++++|...|++..+ . .|+ ...+..+...+...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~--~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA-R--GLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHcCCchhh
Confidence 445555555444443321 122223334445555555555555555543 2 232 3344455555555666554
Q ss_pred ---HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 219 ---GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 219 ---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|...++...+.. +.+..++..+...+.+.|++++|...+++..+ | +...+..+...|.+.|++++|...++++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555543 33455666666666666666666666666553 2 2345555666666677777777777666
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.50 E-value=7.6e-12 Score=117.55 Aligned_cols=226 Identities=7% Similarity=-0.062 Sum_probs=183.9
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
..+...|..+...+...| ++++|...++.+.. .+.+...+..+ ..+...|++++|...++.+. +....++...+..
T Consensus 141 P~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l-~~~~~~~~~~~~~ 217 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL-PFFALERQESAGL 217 (656)
T ss_pred CCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH-hcCCCcchhHHHH
Confidence 345667888999999999 99999999998877 33334444333 34778999999999999988 5543344455566
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhh----HHHHHHHhhhcCCCCCC-cchHHHHHHHH
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTD----VLSIFVELSSDTELKPD-NFTFPCVIKAC 210 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~p~-~~t~~~li~~~ 210 (311)
+...+.+.|++++|...|++..+ .+...+..+...+...|++++ |...|++..+ ..|+ ...+..+...+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHH
Confidence 67889999999999999998763 367788999999999999986 8999999876 4565 46788999999
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHHHhCCCcchHHH
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVS-WNSIICGFSENGFSCESFD 287 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~-y~~li~~~~~~g~~~~a~~ 287 (311)
.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+++.+ |+... +..+..++...|+.++|.+
T Consensus 295 ~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999998875 44677888899999999999999999999884 55433 4445678999999999999
Q ss_pred HHHhh
Q 037178 288 LLIKM 292 (311)
Q Consensus 288 l~~~m 292 (311)
.|++.
T Consensus 374 ~l~~a 378 (656)
T PRK15174 374 VFEHY 378 (656)
T ss_pred HHHHH
Confidence 99998
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=5.1e-14 Score=85.99 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 198 PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 198 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
||.++|+++|++|++.|++++|.++|++|.+.|++||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=1.4e-11 Score=115.49 Aligned_cols=225 Identities=11% Similarity=-0.039 Sum_probs=183.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
....|+.+-..+...| ++++|+..|++.....|+ ...|..+...+...|++++|...++.+. +.. +.+..+|..+.
T Consensus 330 ~a~a~~~lg~~~~~~g-~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 330 EAIALNLRGTFKCLKG-KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL-KLN-SEDPDIYYHRA 406 (615)
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHH
Confidence 4456888888888999 999999999999884444 6688888888999999999999999998 543 44577888899
Q ss_pred HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCCh
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADV 216 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~ 216 (311)
..|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++... ..|+ ...|+.+...+...|++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCH
Confidence 999999999999999998753 3 677888999999999999999999999876 3454 56788899999999999
Q ss_pred hhHHHHHHHHHHhCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHH
Q 037178 217 GFGSGVHGMAAKMGLIGDV------FVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
++|.+.++...+..-..+. ..++.....|...|++++|.+++++..+ | +...+..+...+.+.|++++|.+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999998775422111 1223333344557999999999998764 3 44578999999999999999999
Q ss_pred HHHhh
Q 037178 288 LLIKM 292 (311)
Q Consensus 288 l~~~m 292 (311)
.|++.
T Consensus 564 ~~e~A 568 (615)
T TIGR00990 564 LFERA 568 (615)
T ss_pred HHHHH
Confidence 99988
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=2e-11 Score=103.35 Aligned_cols=231 Identities=17% Similarity=0.236 Sum_probs=186.1
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
..+-.+|.++|.+.|+.. ..+.|.+++++..+ .+.+..+||.+|.+-.-. ...++..+|. ...+.||..|+|
T Consensus 204 PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi-sqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI-SQKMTPNLFTFN 277 (625)
T ss_pred CCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH-HhhcCCchHhHH
Confidence 456678999999999999 99999999999888 889999999999875533 2378899999 888999999999
Q ss_pred HHHHHHHhcCChhHHHH----HHHhcC----CCChHHHHHHHHHHHhCCChhh-HHHHHHHhhhc---CCCCC----Ccc
Q 037178 138 RLITMYSLCGFPLDSRR----VFDSLK----TRNLFQWNALVSGFTKNELYTD-VLSIFVELSSD---TELKP----DNF 201 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~----l~~~m~----~~~~~~y~~li~~~~~~g~~~~-a~~~~~~m~~~---~~~~p----~~~ 201 (311)
+++++..+.|+++.|.+ ++.+|+ +|...+|..+|..+++.++..+ |..++.+++.+ ..++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999999887655 455565 5888999999999999988754 44444444321 23444 456
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHH
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMG----LIGD---VFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWN 270 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~ 270 (311)
.|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.-...|+.|.- |+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 68889999999999999999988765331 2333 35567788888999999999999999984 7888888
Q ss_pred HHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178 271 SIICGFSENGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 271 ~li~~~~~~g~~~~a~~l~~~m~~~~~g 298 (311)
.++.+.-..|+++-.-++|.+| ...|
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~--~~~g 463 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDS--KEYG 463 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHH--HHhh
Confidence 8899999999999999999988 6666
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.3e-12 Score=110.51 Aligned_cols=222 Identities=14% Similarity=0.052 Sum_probs=106.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
|..-|..+...+-..+ +++.|...++++.. .+-+...+..++.. ...+++++|.++++... +. .++...+..++
T Consensus 43 ~~~~~~~~a~La~~~~-~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~-~~--~~~~~~l~~~l 117 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLG-DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAY-ER--DGDPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccc-ccccccccccccccccc-cc--ccccchhhHHH
Confidence 3333444444444556 89999999999888 44456667777777 68889999998888766 33 24566677788
Q ss_pred HHHHhcCChhHHHHHHHhcC-----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccC
Q 037178 141 TMYSLCGFPLDSRRVFDSLK-----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIA 214 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g 214 (311)
..+.+.|+++++.++++... +.+...|..+...+.+.|+.++|.+.+++..+ ..|+ ......++..+...|
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCC
Confidence 88899999999999988854 24677888888999999999999999999876 5675 567778888999999
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHh
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIK 291 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~ 291 (311)
+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+ .|......+..++...|+.++|.++.++
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999988887775 55667888899999999999999999998774 4777888889999999999999998877
Q ss_pred h
Q 037178 292 M 292 (311)
Q Consensus 292 m 292 (311)
.
T Consensus 274 ~ 274 (280)
T PF13429_consen 274 A 274 (280)
T ss_dssp -
T ss_pred c
Confidence 6
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=1.1e-10 Score=113.02 Aligned_cols=222 Identities=7% Similarity=-0.112 Sum_probs=176.0
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
+...|..+-.++.. + ++++|+..|.+.....|+......+...+...|++++|...++.+. .. +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~-~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-T-LPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKIS-LH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-C-CcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHh-cc--CCCcHHHHHHHH
Confidence 55567777777766 7 8888999888887755665554455556678999999999999876 43 344445566778
Q ss_pred HHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 142 MYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
.+.+.|++++|...|++..+. +...+..+.....+.|++++|...|++..+ ..|+...|..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 889999999999999887643 223333344445566999999999999876 56777788899999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|...+++..+.. +.+...++.+...+...|++++|...+++..+ | +...+..+..++...|++++|...+++.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999988875 55778888888899999999999999998875 4 5578899999999999999999999998
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=1.7e-12 Score=109.89 Aligned_cols=220 Identities=13% Similarity=0.068 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-C-CCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-N-ADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
.+-..+.+.| ++++|+++++.... . +|+. ..|..+...+...++.+.|...++.+. ..+ +-+...+..++.. .
T Consensus 13 ~~A~~~~~~~-~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-~~~-~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRG-DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-ASD-KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccc-c
Confidence 4466777889 99999999966544 4 4544 445556666677899999999999998 655 2356677777777 7
Q ss_pred hcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178 145 LCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 222 (311)
..+++++|.++++..-+ ++...+..++..+.+.|+++++.+++++.........+...|..+...+.+.|+.++|.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999887643 4667788899999999999999999999876344556777888899999999999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 223 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 223 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++..+.. +-|..+.+.++..+...|+.+++.++++...+ .|...|..+..+|...|+.++|..++++.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999885 44688899999999999999998888877663 57788999999999999999999999998
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.36 E-value=3.9e-10 Score=105.90 Aligned_cols=228 Identities=9% Similarity=-0.098 Sum_probs=127.2
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC--------
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS-------- 130 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-------- 130 (311)
.|+...|..+-.+|...| ++++|++.+++..+ .+.+...|..+..++...|++++|...+.......++.
T Consensus 157 ~p~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred CCchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 345566777777888888 88888888888777 44455677777888888888888877664332000000
Q ss_pred --------------------------------------------------------------------------------
Q 037178 131 -------------------------------------------------------------------------------- 130 (311)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (311)
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence
Q ss_pred ------------c-hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC
Q 037178 131 ------------N-DFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT 194 (311)
Q Consensus 131 ------------~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 194 (311)
| ....++.+...+...|++++|...|++..+ | +...|..+...+...|++++|...|++..+
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 393 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK-- 393 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 0 011222233333344445555555444331 2 233445555555555555555555555543
Q ss_pred CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHH
Q 037178 195 ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWN 270 (311)
Q Consensus 195 ~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~ 270 (311)
..| +...|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|++..+ | +...|+
T Consensus 394 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~ 471 (615)
T TIGR00990 394 -LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471 (615)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 122 23445555555555555555555555555443 23445555555555666666666666665543 2 345566
Q ss_pred HHHHHHHhCCCcchHHHHHHhh
Q 037178 271 SIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 271 ~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+...+...|++++|.+.|++.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666665
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.4e-10 Score=93.25 Aligned_cols=191 Identities=9% Similarity=-0.105 Sum_probs=122.6
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
..|..+...+...| ++++|...+++... .+.+...+..+...+...|++++|.+.+++.. +.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQG-DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHH
Confidence 45667777777888 88888888887776 44456667777777777888888888887777 443 3344556666777
Q ss_pred HHhcCChhHHHHHHHhcCC-----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCCh
Q 037178 143 YSLCGFPLDSRRVFDSLKT-----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADV 216 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~ 216 (311)
+...|++++|.+.|++..+ .....+..+...+...|++++|...|++... . .| +...+..+...+...|++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-I--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CcCChHHHHHHHHHHHHcCCH
Confidence 7777777777777776542 1234455566666667777777777766654 2 23 234555666666666666
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
++|...+++..+. .+.+...+..+...+.+.|+.++|..+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666555 2334455555566666666666666655543
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=4.2e-10 Score=112.65 Aligned_cols=228 Identities=9% Similarity=0.026 Sum_probs=159.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH-----
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL----- 139 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----- 139 (311)
+..+...+...| ++++|++.|++..+ .+-+...+..+...+.+.|++++|...++++. +.. +.+...+-.+
T Consensus 464 ~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al-~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA-QQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHH
Confidence 445566677888 99999999999888 44456677788888889999999999999887 432 1222222222
Q ss_pred ---------------------------------------HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCCh
Q 037178 140 ---------------------------------------ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY 180 (311)
Q Consensus 140 ---------------------------------------l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~ 180 (311)
...+...|+.++|.++++.- ..+...+..+...+.+.|++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 23344445555555555521 12444566777888888888
Q ss_pred hhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178 181 TDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (311)
++|.+.|++..+ ..| +...+..+...+...|+.++|.+.++.+.+.. +.+..++..+...+.+.|++++|.++++
T Consensus 620 ~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 620 AAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888876 345 35677888888888899999988888776543 3345666777788888899999999888
Q ss_pred hCCC--C-------ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178 260 VMPE--R-------NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 260 ~m~~--~-------~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
++.+ + +...+..+...+...|+.++|.+.|++.. ...|+.|+
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al-~~~~~~~~ 746 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM-VASGITPT 746 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhcCCCCC
Confidence 8764 1 12355566777888899999999988884 44556554
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=3.8e-10 Score=92.07 Aligned_cols=193 Identities=12% Similarity=0.002 Sum_probs=161.5
Q ss_pred ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHH
Q 037178 96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVS 172 (311)
Q Consensus 96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~ 172 (311)
....+..+...+...|++++|...+++.. +.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKAL-EHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 35667778888899999999999999988 543 44567888899999999999999999987653 46678888999
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
.+...|++++|.+.|++... ....+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999876 43223 34567778888999999999999999988765 44577888999999999999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 252 EEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 252 ~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++|.+.+++..+ .+...+..+...+...|+.++|..+.+.+
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998764 35567778888999999999999998887
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.34 E-value=9.6e-11 Score=103.52 Aligned_cols=226 Identities=9% Similarity=0.027 Sum_probs=174.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccCCC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHNAD-LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLITM 142 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll~~ 142 (311)
.|-.|-..|.+.+ .+++|+..|.+.....| ....+.-+...|-..|.++.|...|++.. +. .|+ ...||.|..+
T Consensus 254 AYiNLGnV~ke~~-~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral-~~--~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 254 AYINLGNVYKEAR-IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL-EL--QPNFPDAYNNLANA 329 (966)
T ss_pred HHhhHHHHHHHHh-cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH-hc--CCCchHHHhHHHHH
Confidence 4566666666666 67777777666666333 34556666666777788888888888877 33 343 4578888888
Q ss_pred HHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh
Q 037178 143 YSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~ 218 (311)
+-..|++.+|+..|.+... | -..+.+.|...|...|++++|..+|....+ +.|. ...++.|...|-..|++++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHH
Confidence 8888999998888887652 3 445678888888899999999999888765 6665 4578888888999999999
Q ss_pred HHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhhhh
Q 037178 219 GSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKMMG 294 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m~~ 294 (311)
|...+++..+- +|+ ...|+.+...|-..|+.++|.+.+.+...-|. ..++.|...|-..|++.+|+.-+++.
T Consensus 407 Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a-- 482 (966)
T KOG4626|consen 407 AIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA-- 482 (966)
T ss_pred HHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH--
Confidence 99999887764 554 57888899999999999999999988886444 47889999999999999999999998
Q ss_pred ccCCCCCCc
Q 037178 295 CEEGFIPDV 303 (311)
Q Consensus 295 ~~~g~~P~~ 303 (311)
. .++||.
T Consensus 483 L--klkPDf 489 (966)
T KOG4626|consen 483 L--KLKPDF 489 (966)
T ss_pred H--ccCCCC
Confidence 4 467874
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.32 E-value=4.1e-11 Score=105.84 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=171.4
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhh-----------------------------------HHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEA-----------------------------------TGVLLQ 105 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~-----------------------------------~~~ll~ 105 (311)
..+..|-.+-.++...| +.+.|...|.+..++.|+... |.-+.-
T Consensus 148 ~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 148 KFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred hhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 34556666666666666 666666666666654443322 222222
Q ss_pred hcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChh
Q 037178 106 ACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYT 181 (311)
Q Consensus 106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~ 181 (311)
.+-..|++..|.+-|++.. +. .|+ ...|-.|-+.|...+.+++|...|.+.. .| ..+.+..+...|...|..+
T Consensus 227 ~f~~~Gei~~aiq~y~eAv-kl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAV-KL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred HHhhcchHHHHHHHHHHhh-cC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 3334466666666666665 33 232 3455567788888888888888887644 23 5677888888888999999
Q ss_pred hHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 182 DVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
-|++.|++..+ +.|+ ...|+.+..++-..|++.+|+..+....... +......+.|...|...|++++|.++|..
T Consensus 304 lAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 304 LAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999876 6777 4689999999999999999999999988775 44678889999999999999999999999
Q ss_pred CCC--CCh-hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178 261 MPE--RNL-VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 261 m~~--~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
..+ |.. ..+|.|...|-+.|+.++|...+++. . .++|+
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea--l--rI~P~ 420 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA--L--RIKPT 420 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH--H--hcCch
Confidence 887 433 47899999999999999999999988 4 46775
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=2.7e-09 Score=94.77 Aligned_cols=214 Identities=8% Similarity=-0.074 Sum_probs=154.3
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCChhhHH--HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADLKEATG--VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
..+..+.| +++.|...+.++.+..|+..... .....+...|+.+.|...++.+. +.. +-+..+...+...|.+.|
T Consensus 125 A~aA~~~g-~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~-~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRG-DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLL-EVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHH
Confidence 33445666 78888888877777555544332 23456667777888888777776 444 445666777777777778
Q ss_pred ChhHHHHHHHhcCCC---------------------------------------------ChHHHHHHHHHHHhCCChhh
Q 037178 148 FPLDSRRVFDSLKTR---------------------------------------------NLFQWNALVSGFTKNELYTD 182 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~---------------------------------------------~~~~y~~li~~~~~~g~~~~ 182 (311)
++++|.+++..+.+. +......+..++...|+.++
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 877777666665521 22334556777788888899
Q ss_pred HHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 183 VLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 183 a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
|.+++++..+ . .||. -..++.+....++.+++.+..+...+.. +-|...+.++...+.+.|++++|.+.|+...
T Consensus 282 A~~~L~~~l~-~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 282 AQQIILDGLK-R--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHh-c--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9888888765 2 3333 2234455556688888888888887664 5577788888999999999999999999887
Q ss_pred C--CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 263 E--RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 263 ~--~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+ |+...|-.+...+.+.|+.++|.+++++-
T Consensus 356 ~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 356 KQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 88888888999999999999999998876
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.5e-09 Score=100.44 Aligned_cols=224 Identities=10% Similarity=-0.026 Sum_probs=166.5
Q ss_pred CCcccHHHHHHHHHh-----cCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcc---------cCCChhHHHHHHHHHHh
Q 037178 61 TQGLHFLQEITTLCE-----ESKSLNKALSLLQENLHNADL-KEATGVLLQACG---------HEKDIEIGKRVHELVSA 125 (311)
Q Consensus 61 ~~~~~~~~li~~~~~-----~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~ 125 (311)
.+...|...+++-.. .+ .+++|..+|++..+..|+ ...|..+..++. ..++.++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~-~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al- 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPY-SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT- 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH-
Confidence 344456666666422 23 467999999999984454 445544443332 3355889999999998
Q ss_pred hcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-
Q 037178 126 STQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF- 201 (311)
Q Consensus 126 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 201 (311)
+.+ +-+...+..+...+...|++++|...|++.. .| +...|..+...+...|++++|...+++..+ ..|+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChh
Confidence 654 4467788888888999999999999999865 34 567888999999999999999999999977 456532
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHh
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSE 278 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~ 278 (311)
.+..+...+...|++++|...+++..+..-+-+...+..+...|...|+.++|...++++.. | +....+.+...|+.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33344555777899999999999987765233556678888899999999999999998774 3 33456666677788
Q ss_pred CCCcchHHHHHHhh
Q 037178 279 NGFSCESFDLLIKM 292 (311)
Q Consensus 279 ~g~~~~a~~l~~~m 292 (311)
.| ++|...++.+
T Consensus 488 ~g--~~a~~~l~~l 499 (553)
T PRK12370 488 NS--ERALPTIREF 499 (553)
T ss_pred cH--HHHHHHHHHH
Confidence 88 4788877777
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.27 E-value=2.1e-09 Score=107.66 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=157.7
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHH----------------------------------
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQ---------------------------------- 105 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~---------------------------------- 105 (311)
.+...+..+-..+...| ++++|++.|++..+ .+.+...+..+..
T Consensus 383 ~~~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARK-DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 34556777888888889 99999999999887 3333333332222
Q ss_pred --------hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHH
Q 037178 106 --------ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGF 174 (311)
Q Consensus 106 --------~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~ 174 (311)
.+...|++++|.+.+++.. +.. +-+...+..+...|.+.|++++|...|++..+ | +...+..+...+
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRL-ALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL 539 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2335678888888888877 443 33455666788888888888888888887642 3 333333333333
Q ss_pred HhCCChhhHHHHHHHhhhcC---------------------------------------CCCCCcchHHHHHHHHhccCC
Q 037178 175 TKNELYTDVLSIFVELSSDT---------------------------------------ELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~---------------------------------------~~~p~~~t~~~li~~~~~~g~ 215 (311)
.+.|+.++|...++.+.. . ....+...+..+...+.+.|+
T Consensus 540 ~~~~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HhCCCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 344444444444433211 0 012234456677778888899
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++|...++...+.. +.+...+..+...|...|++++|.+.++...+ | +..++..+..++...|+.++|.++++++
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999988875 55788899999999999999999999998775 3 4456777888888999999999999998
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.26 E-value=1.7e-09 Score=104.81 Aligned_cols=216 Identities=10% Similarity=-0.088 Sum_probs=173.1
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCCh
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFP 149 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~ 149 (311)
..++.+.| ++++|...|+++...+|+...+..+...+.+.|+.++|...+++.. +.+ +.+...+..+.....+.|++
T Consensus 516 A~al~~~G-r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL-~l~-P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVE-DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE-QRG-LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCC-CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHhCCCH
Confidence 44445889 9999999999987755666667777788889999999999999998 654 33333343444455566999
Q ss_pred hHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHH
Q 037178 150 LDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 150 ~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
++|...|++.. .|+...|..+..++.+.|++++|...|++... ..|+. ..+..+-.++...|+.++|...++..
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999876 47788999999999999999999999999976 56764 56777778999999999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNL-VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+.. +-+...+..+..+|.+.|++++|+..|++..+ |+. .+.-.......+..+++.|.+-+++-
T Consensus 670 L~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 670 HKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8875 55788999999999999999999999999875 433 44555556666677777777766655
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.2e-10 Score=101.94 Aligned_cols=221 Identities=10% Similarity=-0.055 Sum_probs=174.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccC-----------------------------------CCChhhHHHHHHhccc
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHN-----------------------------------ADLKEATGVLLQACGH 109 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~-----------------------------------~~~~~~~~~ll~~~~~ 109 (311)
....+-++|.+-+ ++++|.++|+..++. +-.+.+|.++.++|.-
T Consensus 355 vl~q~GrayFEl~-~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 355 VLSQLGRAYFELI-EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 3456778899999 999999999988751 1245677777777888
Q ss_pred CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHH---HHHHHHhCCChhhHHHH
Q 037178 110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNA---LVSGFTKNELYTDVLSI 186 (311)
Q Consensus 110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~---li~~~~~~g~~~~a~~~ 186 (311)
.++.+.|.+.|++.. +.+ +...++|+.+-+-+.....+|.|...|+.....|...||+ +.-.|.+.++++.|.-.
T Consensus 434 Qkdh~~Aik~f~RAi-Qld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAI-QLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhh-ccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence 888899999998887 443 2377888888888888889999999999888777766655 56788899999999999
Q ss_pred HHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178 187 FVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-- 263 (311)
Q Consensus 187 ~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 263 (311)
|++..+ +.| +.+....+...+-+.|+.|+|..++++.....-+ |...---....+...++.++|++.++++++
T Consensus 512 fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 512 FQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 988865 666 4566677777888999999999999988776633 443434445566778999999999999986
Q ss_pred C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 264 R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 264 ~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
| +...|-.+...|-+.|+.+.|+.-|.-|
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 4 5678888889999999999999988877
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.3e-09 Score=87.97 Aligned_cols=224 Identities=15% Similarity=0.131 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch--hhHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND--FIINTRLITM 142 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~ll~~ 142 (311)
|-.=++.+.. . +.++|.++|-+|.+ .+-+..+-.++.+.+-+.|.+++|..++..+.+..++.-+ ....-.|-.-
T Consensus 39 Yv~GlNfLLs-~-Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLLS-N-QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHhh-c-CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 4444444433 4 68999999999998 4445556677888999999999999999998844343332 2234457788
Q ss_pred HHhcCChhHHHHHHHhcCCCC---hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCC
Q 037178 143 YSLCGFPLDSRRVFDSLKTRN---LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIAD 215 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~ 215 (311)
|...|-++.|+.+|..+.+.+ ..+...|+..|-...+|++|+++-++... .+-.+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhh
Confidence 899999999999999988643 34667889999999999999999998877 4444432 245556666667788
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCCcchHHHHHHh
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL----VSWNSIICGFSENGFSCESFDLLIK 291 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~y~~li~~~~~~g~~~~a~~l~~~ 291 (311)
++.|..++.+..+.+ +-++..--.+.+.+...|+++.|.+.++...+.|. .+-..|..+|...|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999888775 34555555677889999999999999999998665 3678899999999999999999998
Q ss_pred hh
Q 037178 292 MM 293 (311)
Q Consensus 292 m~ 293 (311)
+.
T Consensus 275 ~~ 276 (389)
T COG2956 275 AM 276 (389)
T ss_pred HH
Confidence 83
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.23 E-value=1e-08 Score=91.46 Aligned_cols=218 Identities=12% Similarity=-0.031 Sum_probs=150.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH-------HHHHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII-------NTRLI 140 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~-------~~~ll 140 (311)
....+...| +++.|...++.+.+ .+-+...+..+...+...|+++++.+++..+. +.+...+... +..++
T Consensus 159 ~a~l~l~~~-~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 159 RTRILLAQN-ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 355666677 77777777777777 44455667777777777777777777777777 6553322221 11111
Q ss_pred HHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH---HHHHHHHhccC
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF---PCVIKACGGIA 214 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~---~~li~~~~~~g 214 (311)
..-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+ ..||.... ....-.....+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCC
Confidence 111112223344444555443 3777788889999999999999999999876 34555421 22222234457
Q ss_pred ChhhHHHHHHHHHHhCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHh--hCC--CCChhhHHHHHHHHHhCCCcchHHHH
Q 037178 215 DVGFGSGVHGMAAKMGLIGDV--FVSNALIAMYGKCAFVEEMVKLFE--VMP--ERNLVSWNSIICGFSENGFSCESFDL 288 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~--~m~--~~~~~~y~~li~~~~~~g~~~~a~~l 288 (311)
+.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+ ... .||...+..+...+.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888777653 3344 667788999999999999999999 453 58888899999999999999999999
Q ss_pred HHhh
Q 037178 289 LIKM 292 (311)
Q Consensus 289 ~~~m 292 (311)
+++-
T Consensus 393 ~~~~ 396 (409)
T TIGR00540 393 RQDS 396 (409)
T ss_pred HHHH
Confidence 9885
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=6.3e-10 Score=94.46 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=155.9
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWN 168 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~ 168 (311)
.+.+..||.++|.+.|+-...++|.+++++.. ....+.+..++|.+|.+-.-... .++..+|. .||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 34577899999999999999999999999998 66668899999999877554322 56666664 58999999
Q ss_pred HHHHHHHhCCChhh----HHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh-HHHHHHHHHH----hCCCC----cH
Q 037178 169 ALVSGFTKNELYTD----VLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF-GSGVHGMAAK----MGLIG----DV 235 (311)
Q Consensus 169 ~li~~~~~~g~~~~----a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~~----~~ 235 (311)
+++++..+.|+++. |.+++.+|++ -|+.|...+|-.+|.-+++.++..+ +..++.++.. +-++| |.
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 99999999997764 5677888998 9999999999999999988887754 3344444332 22333 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCce
Q 037178 236 FVSNALIAMYGKCAFVEEMVKLFEVMPE--------RN---LVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVI 304 (311)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~---~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~ 304 (311)
..+..-|+.|.+..+.+-|.++..-.+. ++ -.-|..+....|+....+..+.+|+.| .-.-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--VP~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--VPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccceecCCch
Confidence 6777778888888888888888766553 22 134667788889999999999999999 5655666655
Q ss_pred eE
Q 037178 305 TV 306 (311)
Q Consensus 305 t~ 306 (311)
|-
T Consensus 435 ~m 436 (625)
T KOG4422|consen 435 TM 436 (625)
T ss_pred hH
Confidence 43
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=1.6e-08 Score=97.08 Aligned_cols=227 Identities=11% Similarity=0.005 Sum_probs=155.8
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...+..+..++...| ++++|..+|++..+ .+.+...+..+...+...|+.++|...++++. +.. +.+.. +..+
T Consensus 47 ~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l-~~~-P~~~~-~~~l 122 (765)
T PRK10049 47 LPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV-SGA-PDKAN-LLAL 122 (765)
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHH-HHHH
Confidence 34445778888888888 88888888888777 45556667777777788888888888888887 442 33444 7777
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHH--------------------------------
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVL-------------------------------- 184 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~-------------------------------- 184 (311)
..++...|+.++|...+++..+ | +...+..+...+...|..++|+
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 7788888888888888887653 3 4445555555555555555444
Q ss_pred --------------HHHHHhhhcCCCCCCcch-HH----HHHHHHhccCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHH
Q 037178 185 --------------SIFVELSSDTELKPDNFT-FP----CVIKACGGIADVGFGSGVHGMAAKMGLI-GDVFVSNALIAM 244 (311)
Q Consensus 185 --------------~~~~~m~~~~~~~p~~~t-~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 244 (311)
+.++.+.+.....|+... +. ..+.++...|+.++|...|+.+.+.+-+ |+. .-..+...
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 444444431122333221 11 1133456779999999999999887632 322 22225778
Q ss_pred HHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 245 YGKCAFVEEMVKLFEVMPERN-------LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~~-------~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|...|++++|..+|+++.+.+ ...+..+..++...|++++|.++++++
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999886422 234666777899999999999999999
No 35
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=2.9e-09 Score=95.15 Aligned_cols=228 Identities=12% Similarity=0.049 Sum_probs=174.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc--------CCCChhh-HHHHHHhcccCCChhHHHHHHHHHHhh----cC--C
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH--------NADLKEA-TGVLLQACGHEKDIEIGKRVHELVSAS----TQ--F 129 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--------~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~----~g--~ 129 (311)
+...+...|...| +++.|..++++..+ ..|...+ .+.+...|...+++.+|..+|+.+..- .| .
T Consensus 201 ~~~~La~~y~~~g-~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQG-RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444889999999 99999999999877 1444433 344667788899999999999987721 22 1
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----------CCh-HHHHHHHHHHHhCCChhhHHHHHHHhhhcC--CC
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----------RNL-FQWNALVSGFTKNELYTDVLSIFVELSSDT--EL 196 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~--~~ 196 (311)
+--..+++.|-.+|++.|++++|...+++..+ +.+ ..++.++..++..+++++|..++++..+-. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22345677788899999999999888776431 222 347788889999999999999988754311 12
Q ss_pred CCCc----chHHHHHHHHhccCChhhHHHHHHHHHHhC-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178 197 KPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKMG-------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-- 263 (311)
Q Consensus 197 ~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 263 (311)
.++. .+++.+-..+.+.|++++|++++....+.. ..-....++-|-..|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3333 579999999999999999999999876541 222356778888899999999999999987653
Q ss_pred -------CCh-hhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178 264 -------RNL-VSWNSIICGFSENGFSCESFDLLIKMM 293 (311)
Q Consensus 264 -------~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~ 293 (311)
|++ .+|..|...|-+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444 589999999999999999999988773
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=7.3e-09 Score=95.88 Aligned_cols=208 Identities=12% Similarity=-0.011 Sum_probs=154.3
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFD 157 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 157 (311)
++++|...+++..+ .+.+...+..+...+...|++++|...++++. +.+ +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN-LLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999 55567788888888889999999999999998 655 4456677888999999999999999999
Q ss_pred hcCC--CC-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 037178 158 SLKT--RN-LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG 233 (311)
Q Consensus 158 ~m~~--~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 233 (311)
+..+ |+ ...+..+...+...|++++|...+++... .. .|+. ..+..+..++...|+.++|...+.++.... +.
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~ 473 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-IT 473 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ch
Confidence 9763 43 33344455567778999999999999865 32 3543 346677788889999999999998876552 33
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178 234 DVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g 298 (311)
+....+.+...|+..| ++|...++++.+ ++-.-+ +-..|.-.|+-+.+..+ +++ .+.|
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~--~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKF--KNED 536 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHh--hccc
Confidence 4556666777778888 477777777654 222222 44455566776666666 888 5543
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.13 E-value=3.3e-08 Score=94.98 Aligned_cols=226 Identities=9% Similarity=-0.078 Sum_probs=162.4
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...+..+...+.+.| ++++|+..+++... .+.+.. +..+..++...|+.++|...++++. +.. +.+...+..+
T Consensus 81 ~~~~a~~~la~~l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al-~~~-P~~~~~~~~l 156 (765)
T PRK10049 81 QNDDYQRGLILTLADAG-QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL-PRA-PQTQQYPTEY 156 (765)
T ss_pred CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHH
Confidence 34556778888889999 99999999999988 555566 8888888889999999999999998 543 3344555556
Q ss_pred HHHHHhcCChhHHHHHHHhcCC---------------------------------------------------CChH-HH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT---------------------------------------------------RNLF-QW 167 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~---------------------------------------------------~~~~-~y 167 (311)
..++.+.|..++|.+.++.... |+.. .+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 7777766776666555543221 1110 01
Q ss_pred ----HHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC---cHHHHH
Q 037178 168 ----NALVSGFTKNELYTDVLSIFVELSSDTELK-PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG---DVFVSN 239 (311)
Q Consensus 168 ----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~ 239 (311)
...+.++...|++++|...|+++.+ .+.. |+. .-..+..++...|++++|...++.+.+..-.. ......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 1113345677999999999999987 5422 332 22235678999999999999999987653111 135667
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-------------C---hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPE--R-------------N---LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~--~-------------~---~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+..++.+.|++++|.++++++.+ | + ...+..+...+...|+.++|+++++++
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777788999999999999998875 2 1 124556777888899999999999988
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.11 E-value=1.2e-08 Score=90.61 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=163.9
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHhhccCCCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH--HHHH
Q 037178 66 FLQEITTLCE--ESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN--TRLI 140 (311)
Q Consensus 66 ~~~li~~~~~--~g~~~~~a~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~--~~ll 140 (311)
+..+..+... .| +++.|.+.+....+..+++ ..|.....+..+.|+.+.+.+.+.++. +. .|+...+ -...
T Consensus 85 ~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~-~~--~~~~~~~~~l~~a 160 (398)
T PRK10747 85 RKQTEQALLKLAEG-DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA-EL--ADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCcchHHHHHHHH
Confidence 4444444433 57 9999998888765522223 334444556689999999999999998 43 4554333 2446
Q ss_pred HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-------------------
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP------------------- 198 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p------------------- 198 (311)
..+...|++++|.+.++++.+ | +...+..+...|.+.|++++|.+++..+.+ .+..+
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999874 3 677899999999999999999999999886 43322
Q ss_pred ----------------------CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178 199 ----------------------DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 199 ----------------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (311)
+......+..++...|+.++|.+++.+..+. .+|... .++.+....|+.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence 1123334456667888888888888887764 444422 23344445688888888
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeE
Q 037178 257 LFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITV 306 (311)
Q Consensus 257 ~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~ 306 (311)
..++..+ | |...+.++-..+.+.|++++|.+.|+.. .+ ..|+..+|
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a--l~--~~P~~~~~ 364 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA--LK--QRPDAYDY 364 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--Hh--cCCCHHHH
Confidence 8887775 3 4556788899999999999999999999 53 46776553
No 39
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.9e-10 Score=63.39 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 230 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 230 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 40
>PF12854 PPR_1: PPR repeat
Probab=99.03 E-value=4e-10 Score=62.12 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=28.5
Q ss_pred cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
.|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.03 E-value=4.5e-09 Score=96.49 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=161.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178 58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII 135 (311)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 135 (311)
...|+.+||..+|.-||..| +.+.|- +|.-|+- .+.+...|+.++.+....++.+.+. .|...+
T Consensus 20 gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt 85 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT 85 (1088)
T ss_pred cCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence 45788899999999999999 999998 8888887 7777888999999999988876543 688899
Q ss_pred HHHHHHHHHhcCChhH---HHHHHHhcCCC----------------------ChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 136 NTRLITMYSLCGFPLD---SRRVFDSLKTR----------------------NLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~---A~~l~~~m~~~----------------------~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
|+.|+.+|...|++.. .++.++.+... ....-...+.-..-.|-++.+++++..|
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999998655 33322222210 0001123444445556667777776665
Q ss_pred hhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----h
Q 037178 191 SSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN----L 266 (311)
Q Consensus 191 ~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~ 266 (311)
.......|..+ +++-+.. +....+++.+.-+...-.|+..+|.++++.-..+|+.+.|..++.+|.+.. .
T Consensus 166 Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 43222222222 2443333 233445555443332225999999999999999999999999999999843 3
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeEee
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVT 308 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~~~ 308 (311)
.-|..|+.+ .|....+..+++.| .+.|+.||..|+..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgm--qe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGM--QEKGVQPGSETQAD 276 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHH--HHhcCCCCcchhHH
Confidence 445666666 88889999999999 89999999999853
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.00 E-value=4.1e-08 Score=87.64 Aligned_cols=230 Identities=9% Similarity=-0.069 Sum_probs=124.8
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCCChh--hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 71 TTLCEESKSLNKALSLLQENLHNADLKE--ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
.+..+.| +.+.|.+.+.+..+..|+.. ........+...|+.+.|...++.+. +.. +-+..+...+...|.+.|+
T Consensus 126 ~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~-~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRG-DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL-EMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHhh
Confidence 3444555 66666666666555223332 22223455555666666666666665 333 3344555566666666666
Q ss_pred hhHHHHHHHhcCCC---ChHHHH----HHHHHHHhCCChhhHHHHHHHhhhcCCC---CCCcchHHHHHHHHhccCChhh
Q 037178 149 PLDSRRVFDSLKTR---NLFQWN----ALVSGFTKNELYTDVLSIFVELSSDTEL---KPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 149 ~~~A~~l~~~m~~~---~~~~y~----~li~~~~~~g~~~~a~~~~~~m~~~~~~---~p~~~t~~~li~~~~~~g~~~~ 218 (311)
+++|.+++..+.+. +...+. ....+....+..+++.+.+..+.. ... +.+...+..+...+...|+.++
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 66666666665532 222221 111111222233333334444433 111 1255566667777778888888
Q ss_pred HHHHHHHHHHhCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch--hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 219 GSGVHGMAAKMGLIGDVFV-SNALIAMYGKCAFVEEMVKLFEVMPE--R-NL--VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~--~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|.+++++..+......... ...........++.+.+.+.+++..+ | |. ....++-..+.+.|++++|.+.|+..
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 8888888777642221111 11111222334667777777766653 3 33 45567888899999999999999954
Q ss_pred hhccCCCCCCceeE
Q 037178 293 MGCEEGFIPDVITV 306 (311)
Q Consensus 293 ~~~~~g~~P~~~t~ 306 (311)
......||...+
T Consensus 362 --~a~~~~p~~~~~ 373 (409)
T TIGR00540 362 --AACKEQLDANDL 373 (409)
T ss_pred --HHhhcCCCHHHH
Confidence 333456776543
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2e-08 Score=82.73 Aligned_cols=227 Identities=11% Similarity=-0.034 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC 146 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~ 146 (311)
+.+-++|.+-| .+.+|..-|+......|-+.||..+-++|.+..+++.|..++.+-. + .++-|+....-..+.+-..
T Consensus 227 ~Q~gkCylrLg-m~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gl-d-~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLG-MPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGL-D-SFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhc-ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhh-h-cCCchhhhhhhhHHHHHHH
Confidence 67788999999 9999999999988877888999999999999999999999999877 2 2344554445566777788
Q ss_pred CChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 037178 147 GFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 147 g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 223 (311)
++.++|.++|+...+ -++.+..++..+|.-.|+++-|++.|.++.+ .|+. +..-|+.+--+|.-.+++|.+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999998764 3677777888899999999999999999998 8874 4566777777888889999999999
Q ss_pred HHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178 224 GMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 224 ~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g 298 (311)
++....--.|+ ..+|-.+-....-.|++.-|.+.|+-.... +...+|.|..--.+.|+++.|..++... . .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A--~--s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA--K--S 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh--h--h
Confidence 98877654454 467878888888899999999999988753 4468999999999999999999999988 3 3
Q ss_pred CCCC
Q 037178 299 FIPD 302 (311)
Q Consensus 299 ~~P~ 302 (311)
+-|+
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 4555
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=5.2e-07 Score=76.38 Aligned_cols=232 Identities=11% Similarity=0.020 Sum_probs=156.3
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccC--CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHN--ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
..+..|-.-..+.-+.| +.+.+-..+.+.-+. .++...+.+..+.....|+.+.|..-.+++. +.+ +....+...
T Consensus 116 ~p~l~~l~aA~AA~qrg-d~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll-~~~-pr~~~vlrL 192 (400)
T COG3071 116 QPVLAYLLAAEAAQQRG-DEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL-EMT-PRHPEVLRL 192 (400)
T ss_pred chHHHHHHHHHHHHhcc-cHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH-HhC-cCChHHHHH
Confidence 34445555666666777 888888888887773 4444556666667777888888877777776 444 456666777
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCh-----------HHHH----------------------------------HHHHH
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKTRNL-----------FQWN----------------------------------ALVSG 173 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~~~~-----------~~y~----------------------------------~li~~ 173 (311)
...+|.+.|++.....++..|.+... .+|+ +++.-
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 78888888888888888777764211 2333 34444
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE 253 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 253 (311)
+.+.|+.++|.++.++-.+ .+-.|+ -...-.+.+.++.+.-.+..+...+. .+-+...+.+|...|.+.+.+.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk-~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALK-RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHH-hccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHH
Confidence 5555666666666555554 444444 11222334444444444444433322 24455888899999999999999
Q ss_pred HHHHHhhCCC--CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178 254 MVKLFEVMPE--RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 254 A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
|...|+...+ ++..+|+-+..+|.+.|+.++|.++.++- ...-..|+.
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~--L~~~~~~~~ 396 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREA--LLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHH--HHHhcCCCC
Confidence 9999998764 89999999999999999999999999988 554455543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.6e-08 Score=83.59 Aligned_cols=217 Identities=13% Similarity=0.063 Sum_probs=160.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc----CCCChhhHHHHHHhcccCCChhH-HHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH----NADLKEATGVLLQACGHEKDIEI-GKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~----~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+-+.+.++.-+.+++++|+++|+...+ .-.|..+|.-++-.--....+.- |+.++. + . +--..|+.++.
T Consensus 264 i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-i---d--KyR~ETCCiIa 337 (559)
T KOG1155|consen 264 IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-I---D--KYRPETCCIIA 337 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-h---c--cCCccceeeeh
Confidence 334444444444488999999998887 33456677766655332222211 111111 1 1 33456777788
Q ss_pred HHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCCh
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADV 216 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~ 216 (311)
+.|+-.++-++|...|++..+ .....|+-+.+-|....+...|++-+++..+ +.| |-..|-.|-++|.-.+..
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcch
Confidence 888888999999999988653 3567899999999999999999999988865 444 667888888999998888
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.-|.-.|++..+-. +.|..+|.+|.++|.+.++.++|.+.|..... .+...|..|.+.|-+.++..+|...|++-
T Consensus 415 ~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 415 FYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888888877764 66889999999999999999999999988774 34478889999999999999988887765
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.97 E-value=3.4e-07 Score=87.47 Aligned_cols=217 Identities=8% Similarity=0.008 Sum_probs=139.9
Q ss_pred HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChh
Q 037178 72 TLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPL 150 (311)
Q Consensus 72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~ 150 (311)
.+...| ++++|+++|+++.+ .+.+...+..++..+...++.++|.+.++.+. +. .|+...+-.++..+...++..
T Consensus 111 ly~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 111 AYRNEK-RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA-ER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc-cc--CcchHHHHHHHHHHHhcchHH
Confidence 455556 77777777777766 44445555566666666777777777777665 32 344444433333333344454
Q ss_pred HHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhh------------------------------------
Q 037178 151 DSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELS------------------------------------ 191 (311)
Q Consensus 151 ~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~------------------------------------ 191 (311)
+|.+.++++.+ | +...+..++.+..+.|-...|.++.++-.
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 56677766652 3 44555666666666665555554443211
Q ss_pred ------------hcCCCCCCcch-H----HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178 192 ------------SDTELKPDNFT-F----PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 192 ------------~~~~~~p~~~t-~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 254 (311)
...+-.|.... | .=.+-++...|+..++.+.++.+...|.+....+-.++.++|...+..++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 00111122111 1 122335567788888999999998888776777888999999999999999
Q ss_pred HHHHhhCCCC---------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 255 VKLFEVMPER---------NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 255 ~~~~~~m~~~---------~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..+++++... +......|..+|...+++++|..+++++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999987541 2333578999999999999999999999
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=4.9e-07 Score=77.07 Aligned_cols=91 Identities=7% Similarity=-0.127 Sum_probs=48.3
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHh
Q 037178 100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTK 176 (311)
Q Consensus 100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~ 176 (311)
|......+.+.|+.++|...|++.. +.. +.+...|+.+...|...|++++|...|++..+ | +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al-~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQAL-ALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444444555555555555555555 332 23345555555555555666666555555432 2 34455555555555
Q ss_pred CCChhhHHHHHHHhhh
Q 037178 177 NELYTDVLSIFVELSS 192 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~ 192 (311)
.|++++|.+.|++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666655555543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=1.8e-08 Score=90.02 Aligned_cols=217 Identities=12% Similarity=0.061 Sum_probs=155.2
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC---------------------------
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS--------------------------- 130 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~--------------------------- 130 (311)
+.++|+..|.+... +.-......-+.++|-..+++++++++|+.+.......
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 56789999999555 44445667788899999999999999999988322211
Q ss_pred -----chhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch
Q 037178 131 -----NDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT 202 (311)
Q Consensus 131 -----~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t 202 (311)
-...+|.++.++|.-.++.+.|.+.|++..+ ....+|+-+-+-+.....+|+|...|+.... .|...
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchh
Confidence 2345667777777777778888888877653 2556777777777777778888877766533 44444
Q ss_pred HH---HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 037178 203 FP---CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGF 276 (311)
Q Consensus 203 ~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~ 276 (311)
|+ -+--.|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++... .|+..---.+..+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 44 44556778888888888888776655 44666677777778888888888888887663 4655555566777
Q ss_pred HhCCCcchHHHHHHhhhhccCCCCCCcee
Q 037178 277 SENGFSCESFDLLIKMMGCEEGFIPDVIT 305 (311)
Q Consensus 277 ~~~g~~~~a~~l~~~m~~~~~g~~P~~~t 305 (311)
...++.++|+..++++ + .+.|+..+
T Consensus 568 ~~~~~~~eal~~LEeL--k--~~vP~es~ 592 (638)
T KOG1126|consen 568 FSLGRYVEALQELEEL--K--ELVPQESS 592 (638)
T ss_pred HhhcchHHHHHHHHHH--H--HhCcchHH
Confidence 7788888888888888 3 35666543
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.1e-07 Score=76.72 Aligned_cols=217 Identities=9% Similarity=-0.061 Sum_probs=158.4
Q ss_pred HHHHHhhcCccchhhhhcCCCCCcccH---HHHHHHHHhcCCCHHHHHHHHHhhccCCCC------hhhHHHHHHhcccC
Q 037178 40 LRSIFKEKSSLSLSAKTNNASTQGLHF---LQEITTLCEESKSLNKALSLLQENLHNADL------KEATGVLLQACGHE 110 (311)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~~a~~~~~~m~~~~~~------~~~~~~ll~~~~~~ 110 (311)
++-+++..+.-....|.++.+-|..+| -+|-+-|-+.| ..+.|+++-+.+.. .|| ....-.+.+-|-..
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG-EVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc-hHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHh
Confidence 333344444444556666655555554 34556677778 99999999988776 232 12234456667788
Q ss_pred CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh--------HHHHHHHHHHHhCCChhh
Q 037178 111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL--------FQWNALVSGFTKNELYTD 182 (311)
Q Consensus 111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~--------~~y~~li~~~~~~g~~~~ 182 (311)
|-++.|+.+|..+. +.| +.-.....-|+..|-+..+|++|.++-+++.+-+. .-|.-+...+....+++.
T Consensus 121 Gl~DRAE~~f~~L~-de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 121 GLLDRAEDIFNQLV-DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhHHHHHHHHHh-cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999998 544 33445667799999999999999999887654322 246666667777889999
Q ss_pred HHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 183 VLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 183 a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
|..++++..+ ..|+.+ .--.+-+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++
T Consensus 199 A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 199 ARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999998865 345443 333455677889999999999999999887777888999999999999999988888766
Q ss_pred CC
Q 037178 262 PE 263 (311)
Q Consensus 262 ~~ 263 (311)
.+
T Consensus 276 ~~ 277 (389)
T COG2956 276 ME 277 (389)
T ss_pred HH
Confidence 54
No 50
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=4.9e-07 Score=76.35 Aligned_cols=216 Identities=12% Similarity=-0.013 Sum_probs=144.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-chhhHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS-NDFIINTRLITM 142 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~ll~~ 142 (311)
...-+.+++...| +.+.++ .+... ..|.......+...+...++-+.+..-+++.. ..+.. .+..+.-..-..
T Consensus 37 ~~~~~~Rs~iAlg-~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~-~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYIALG-QYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELL-ADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHTT--HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCC-CTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-ChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHH-HhccccccHHHHHHHHHH
Confidence 4456677888888 777544 34433 45666666666666655455555555554443 22322 343333333455
Q ss_pred HHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh----ccCChhh
Q 037178 143 YSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG----GIADVGF 218 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~----~~g~~~~ 218 (311)
+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|++ ...| .+...+..++. ....+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHH
Confidence 66779999999998876 5666777888999999999999999999986 3334 34444555443 2346899
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCc-chHHHHHHhh
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSIICGFSENGFS-CESFDLLIKM 292 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~y~~li~~~~~~g~~-~~a~~l~~~m 292 (311)
|..+|+++.+. +.++..+.|.+..++...|++++|.+++.+..+. |..+.-.+|....-.|+. +.+.+.+.++
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 99999997654 5778899999999999999999999999987753 445555567776677766 6677888888
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.83 E-value=1.2e-06 Score=74.19 Aligned_cols=226 Identities=12% Similarity=0.015 Sum_probs=180.4
Q ss_pred hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHH
Q 037178 75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSR 153 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 153 (311)
-.| +|.+|.++..+-.+ ..--...|.....+.-..|+.+.+-.++.++. +.--.++..++-+........|+.+.|.
T Consensus 96 ~eG-~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEG-DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcC-cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 358 99999999998776 43445567888888889999999999999998 5533778888888999999999999999
Q ss_pred HHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-------chHHHHHHHHhccCChhhHHHHH
Q 037178 154 RVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-------FTFPCVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 154 ~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~t~~~li~~~~~~g~~~~a~~~~ 223 (311)
.-.++.. .++.........+|.+.|++.++..+...|.+ .|+--|+ .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 8887754 56888999999999999999999999999998 7765544 46788888777777776666666
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------------------------------CChhhH
Q 037178 224 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----------------------------------RNLVSW 269 (311)
Q Consensus 224 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------------------------~~~~~y 269 (311)
+..-+. .+.+...-.+++.-+.++|+.++|.++.++..+ -+.-.+
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 655333 355667777888888888888888888775542 145678
Q ss_pred HHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeEee
Q 037178 270 NSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVT 308 (311)
Q Consensus 270 ~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~~~ 308 (311)
.+|-.-|.+++.|.+|.+.|+.. . ...|+..+|+-
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaA--l--~~~~s~~~~~~ 366 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAA--L--KLRPSASDYAE 366 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH--H--hcCCChhhHHH
Confidence 89999999999999999999977 5 35777777653
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.81 E-value=1.6e-06 Score=83.02 Aligned_cols=188 Identities=10% Similarity=-0.005 Sum_probs=153.4
Q ss_pred HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC---------ChHHHHHHHH
Q 037178 102 VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR---------NLFQWNALVS 172 (311)
Q Consensus 102 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---------~~~~y~~li~ 172 (311)
-.+-++...|+..++.+.|+.+. ..|.+....+--++.++|...++.++|+.+|+++.+. +......|.-
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 34667778899999999999999 7786655667788999999999999999999987432 3344578899
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCC-----------CCCc---chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178 173 GFTKNELYTDVLSIFVELSSDTEL-----------KPDN---FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS 238 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~-----------~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 238 (311)
+|...+++++|..+++++.+ ... .||. ..+..++..+...|++.+|++.++.+.... +-|..+.
T Consensus 376 A~ld~e~~~~A~~~l~~~~~-~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~ 453 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSE-QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLR 453 (822)
T ss_pred HHHhcccHHHHHHHHHHHHh-cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 99999999999999999976 211 1221 134456777889999999999999997775 7799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..+.+.+...|+..+|++.++.... | +..+......++...|+++.|..+.+..
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999987663 4 5567778888999999999999988777
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=1.4e-06 Score=74.20 Aligned_cols=191 Identities=7% Similarity=-0.122 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
..|..+-..+...| +.++|...|++..+ .+.+...|+.+...+...|+++.|...|+... +.. +-+..++..+..+
T Consensus 65 ~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLG-LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL-ELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHH
Confidence 45777778889999 99999999999999 55567899999999999999999999999998 544 3346677778899
Q ss_pred HHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178 143 YSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 220 (311)
+...|++++|.+.|++..+ |+-.....+.......+++++|...|.+... . ..|+...+ .+ .....|+.+++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-~-~~~~~~~~-~~--~~~~lg~~~~~- 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-K-LDKEQWGW-NI--VEFYLGKISEE- 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-h-CCccccHH-HH--HHHHccCCCHH-
Confidence 9999999999999998653 3322222222234456789999999977543 2 23333222 22 22345666554
Q ss_pred HHHHHHHHhC---C---CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 221 GVHGMAAKMG---L---IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 221 ~~~~~m~~~g---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+.+..+.+.. . +.....|..+...|.+.|++++|...|++..+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445444321 1 11346899999999999999999999998875
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.80 E-value=1.1e-07 Score=87.62 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=137.5
Q ss_pred HHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh
Q 037178 87 LQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL 164 (311)
Q Consensus 87 ~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 164 (311)
+-.+.. +.|+..||..+|.-||..|+++.|- +|.-|+ ....+.+..+++.++.+....++.+.+. +|..
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 344444 8899999999999999999999999 999998 7788889999999999999999988776 7888
Q ss_pred HHHHHHHHHHHhCCChhh---HHHHHHHhhh---cCCCCCCcchHHHHHHHHhccCChhhHH---------HHHHHHHHh
Q 037178 165 FQWNALVSGFTKNELYTD---VLSIFVELSS---DTELKPDNFTFPCVIKACGGIADVGFGS---------GVHGMAAKM 229 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~---a~~~~~~m~~---~~~~~p~~~t~~~li~~~~~~g~~~~a~---------~~~~~m~~~ 229 (311)
.+|++|..+|...|+... +.+.++.... +.|+.--+.-+-..++++- +-...+. .++....+.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998665 2222222211 1222222222222222221 1111111 112222222
Q ss_pred CC-CCcHHHHHH---HHHHHHh-cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178 230 GL-IGDVFVSNA---LIAMYGK-CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 230 g~-~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
+. .|...-++. +++-... ...+++-..+.....+ ++..+|.+++.+-.-+|+++.|..++.+| ++.|+.-+.
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em--ke~gfpir~ 239 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM--KEKGFPIRA 239 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH--HHcCCCccc
Confidence 21 111111111 1222222 1234444444444444 89999999999999999999999999999 899999988
Q ss_pred eeEeecc
Q 037178 304 ITVVTVL 310 (311)
Q Consensus 304 ~t~~~li 310 (311)
+-|..||
T Consensus 240 HyFwpLl 246 (1088)
T KOG4318|consen 240 HYFWPLL 246 (1088)
T ss_pred ccchhhh
Confidence 8776654
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=2.3e-06 Score=67.53 Aligned_cols=190 Identities=10% Similarity=-0.051 Sum_probs=159.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
.-.|--.|.+.| +...|..-+++..+ .+-+..+|..+...|-+.|..+.|.+.|+... +.. +-+..+.|..-..+|
T Consensus 38 rlqLal~YL~~g-d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQG-DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcC-CCccchhhhhhHHHH
Confidence 456777899999 99999999999999 55556789999999999999999999999988 554 456778888999999
Q ss_pred hcCChhHHHHHHHhcC-CC----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhh
Q 037178 145 LCGFPLDSRRVFDSLK-TR----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~-~~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~ 218 (311)
..|++++|...|++.. .| -..+|..+.-+..+.|+++.|...|++-.+ ..|+ ..+...+..-..+.|++-.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999855 44 336888999999999999999999999876 4454 4678888899999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
|..+++.....+- ++....-..|..--+.|+.+.+.+.=..+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999888874 888888888888888898888777555444
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=7e-07 Score=76.90 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=138.0
Q ss_pred CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHH
Q 037178 110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~ 186 (311)
.|++++|.+.|++.. ...-.-....|| +--.+-+.|++++|+..|-++. ..++...-.+...|--..+...|+++
T Consensus 503 ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 478888888888887 444334444555 2334566789999999887764 35667777788888888888999998
Q ss_pred HHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC--C
Q 037178 187 FVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP--E 263 (311)
Q Consensus 187 ~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 263 (311)
+-+.. .+.| |......|...|-+.|+-.+|.+.+-+--+ -++-+..+..-|..-|....-.++|...|++.- +
T Consensus 581 ~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 581 LMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 86654 3445 567888888999999999999988765433 357788888888888999999999999999764 8
Q ss_pred CChhhHHHHHHHHH-hCCCcchHHHHHHhh
Q 037178 264 RNLVSWNSIICGFS-ENGFSCESFDLLIKM 292 (311)
Q Consensus 264 ~~~~~y~~li~~~~-~~g~~~~a~~l~~~m 292 (311)
|+.+-|..||..|. +.|++++|.++++..
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999987665 589999999999998
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=2.5e-06 Score=77.32 Aligned_cols=222 Identities=12% Similarity=0.003 Sum_probs=159.1
Q ss_pred HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC---
Q 037178 72 TLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG--- 147 (311)
Q Consensus 72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g--- 147 (311)
.+.+.| ++++|++.++.-.. +......+......+.+.|+.++|..+|..+. +.+ +.+..-|..|..+..-..
T Consensus 13 il~e~g-~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li-~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAG-DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI-DRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCC-CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-CCcHHHHHHHHHHHhhhcccc
Confidence 346778 99999999988766 55555666777888889999999999999998 665 344555555665553322
Q ss_pred --ChhHHHHHHHhcCC----------------------------------CCh-HHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 148 --FPLDSRRVFDSLKT----------------------------------RNL-FQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 148 --~~~~A~~l~~~m~~----------------------------------~~~-~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
..+...++|+++.. +++ .+++.|-.-|....+..-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 45666677776531 111 23555555555555555555666655
Q ss_pred hhc---CC----------CCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 191 SSD---TE----------LKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 191 ~~~---~~----------~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
... .+ -.|.. .++.-+...|...|++++|.+++++..+.- +-.+..|..-...|-..|++++|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 431 11 12333 355666778889999999999999988874 334788999999999999999999
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178 256 KLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF 299 (311)
Q Consensus 256 ~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~ 299 (311)
+..++.++ .|-..-+..+..+.++|++++|.+++... .+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F--tr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLF--TREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh--cCCCC
Confidence 99999886 45567788899999999999999999988 66555
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=6e-07 Score=77.92 Aligned_cols=212 Identities=10% Similarity=0.016 Sum_probs=169.5
Q ss_pred hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHH
Q 037178 75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSR 153 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 153 (311)
-.| +.-.|..-|+.... .+.+...|.-+...|....+.++....|+... +.+ +-+..+|-.-...+.-.+++++|.
T Consensus 338 L~g-~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~-~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 338 LKG-DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE-DLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hcC-CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH-hcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 446 88889999999888 33344448778888999999999999999998 555 445666666777777788999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 154 RVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 154 ~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
.=|++... .++..|-.+--+..+.++++++...|++.+. .++--...|+.....+...+++++|.+.|+...+..
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99998763 3777888888888899999999999999875 344456789999999999999999999999877542
Q ss_pred C-------CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 231 L-------IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 231 ~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
- .+...+.-+++..-.+ +++..|..++++..+-|. ..|.+|...-.+.|+.++|+++|++-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 2233444455544455 999999999999998554 68999999999999999999999875
No 59
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.4e-06 Score=84.08 Aligned_cols=201 Identities=12% Similarity=0.003 Sum_probs=103.0
Q ss_pred hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc---hhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-C-hHHHHHHH
Q 037178 97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN---DFIINTRLITMYSLCGFPLDSRRVFDSLKTR-N-LFQWNALV 171 (311)
Q Consensus 97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~-~~~y~~li 171 (311)
...|-..|......+++++|+++.+++....++.- ..-+|.++++.-..-|.-+...++|++..+- | -..|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34455555555555566666666555552222211 1234445555555555555555555555432 2 23455555
Q ss_pred HHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCC
Q 037178 172 SGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL-IGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~ 250 (311)
..|.+.+++++|.++|+.|.+..+ -....|...+..+.+..+-+.|..++.+.++.=- .-........+..-.+.|+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 666666666666666666553122 3344555555555555555555555555544310 1123344444444455566
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCC
Q 037178 251 VEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIP 301 (311)
Q Consensus 251 ~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P 301 (311)
.+.+..+|+.... +....|+..|+.-.++|+.+.+..+|++. ...++.|
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv--i~l~l~~ 1667 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV--IELKLSI 1667 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH--HhcCCCh
Confidence 6666666655553 23445666666666666666666666655 4444443
No 60
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-06 Score=75.89 Aligned_cols=221 Identities=12% Similarity=0.027 Sum_probs=164.1
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhc-c-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENL-H-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
-|..+|..++-.--... .+..+-+-. . .+-.+.|..++.+-|+-.++.++|...|+... +.+ +.....|+.
T Consensus 297 ~dmdlySN~LYv~~~~s-----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL-kLN-p~~~~aWTL 369 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKS-----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL-KLN-PKYLSAWTL 369 (559)
T ss_pred hhHHHHhHHHHHHhhhH-----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH-hcC-cchhHHHHH
Confidence 35567777665443322 222222221 1 44556788888888888899999999999988 666 455678888
Q ss_pred HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA 214 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g 214 (311)
+.+-|....+...|..-+++.. ..|-..|-.|..+|.-.+.+.-|+-.|++... ++| |...|.+|-++|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhc
Confidence 8899999999999999998755 45778899999999999999999999999876 677 5788999999999999
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChhh---HHHHHHHHHhCCCcch
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-------RNLVS---WNSIICGFSENGFSCE 284 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~---y~~li~~~~~~g~~~~ 284 (311)
+.++|.+.|.+....| ..+...+..|.+.|-+.++.++|-..|++-.+ .+..+ ---|..-+.+.+++++
T Consensus 447 ~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 9999999999988877 44668899999999999999999888876553 22211 1114455666666666
Q ss_pred HHHHHHhh
Q 037178 285 SFDLLIKM 292 (311)
Q Consensus 285 a~~l~~~m 292 (311)
|.......
T Consensus 526 As~Ya~~~ 533 (559)
T KOG1155|consen 526 ASYYATLV 533 (559)
T ss_pred HHHHHHHH
Confidence 66544333
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1e-06 Score=77.70 Aligned_cols=239 Identities=13% Similarity=0.035 Sum_probs=162.7
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+......-..-+-..+ ++.+..++++...+ .++....+..-|.++...|+..+-..+=..++ + ..+....+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c-~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-~-~yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGC-RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV-D-LYPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcC-hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH-H-hCCCCCcchhhH
Confidence 34444445555555667 77777777777777 66666666666666677777666655555565 2 224456667667
Q ss_pred HHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHH----------------------------------HHhCCChhh
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSG----------------------------------FTKNELYTD 182 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~----------------------------------~~~~g~~~~ 182 (311)
.-.|.-.|+.++|++.|.+-.. .-...|-...+. |.+.++.+-
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 7777777777777777766432 122333333333 344555566
Q ss_pred HHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh----C--CCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 183 VLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----G--LIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 183 a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
|.+.|.+.. ++-| |...++-+--.....+.+.+|..+|+..+.. + ..-...+++.|...|.+.+++++|.
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 666665553 3555 4556666666666778899999988876622 1 1124567899999999999999999
Q ss_pred HHHhhCC---CCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCceeEeec
Q 037178 256 KLFEVMP---ERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVITVVTV 309 (311)
Q Consensus 256 ~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t~~~l 309 (311)
..|++.. ..|..+|.++.-.|...|+++.|.+.|.+. . .+.||..+...+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa--L--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA--L--ALKPDNIFISEL 528 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH--H--hcCCccHHHHHH
Confidence 9999876 478899999999999999999999999988 4 688887654443
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.67 E-value=1.7e-06 Score=77.75 Aligned_cols=195 Identities=10% Similarity=0.006 Sum_probs=145.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHh----hcCC-Cch
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLH-----NADL----KEATGVLLQACGHEKDIEIGKRVHELVSA----STQF-SND 132 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~g~-~~~ 132 (311)
+.+-..|...+ ++++|..+|+++.. .-++ ..+++.|-.+|.+.|++++|...++...+ ..|. .++
T Consensus 245 ~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 245 NILALVYRSLG-KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 44666778889 99999999999986 1122 34567777789999999999888876652 1121 222
Q ss_pred h-hHHHHHHHHHHhcCChhHHHHHHHhcC--------CCC---hHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-----C
Q 037178 133 F-IINTRLITMYSLCGFPLDSRRVFDSLK--------TRN---LFQWNALVSGFTKNELYTDVLSIFVELSSDT-----E 195 (311)
Q Consensus 133 ~-~~~~~ll~~~~~~g~~~~A~~l~~~m~--------~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----~ 195 (311)
+ ..++.+...|+..+++++|..++.... +.+ ..+|+.|...|.+.|++++|.++|++..... +
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 2 245667778888899999998887643 123 2579999999999999999999999874411 1
Q ss_pred CCCC-cchHHHHHHHHhccCChhhHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 196 LKPD-NFTFPCVIKACGGIADVGFGSGVHGMAA----KMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 196 ~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..+. ...++.+-..|.+.+..++|.++|.+-. ..| .+-...+|..|...|.+.|++++|.++.+...
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1222 4578888999999999999998887643 233 23346899999999999999999999988765
No 63
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.65 E-value=3.1e-08 Score=55.10 Aligned_cols=35 Identities=37% Similarity=0.655 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
.+||++|.+|++.|++++|.++|++| .+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M--~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEM--LERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHH--HHcCCCCCC
Confidence 47999999999999999999999999 899999984
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.1e-07 Score=75.21 Aligned_cols=200 Identities=12% Similarity=-0.025 Sum_probs=167.9
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
.|-+.||--|-++|.+-. ++..|+.+|.+-.. .+-|+....-+.+.+-..++.+.+.++|+... +.. +.++....+
T Consensus 253 ~~~~dTfllLskvY~rid-QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl-k~~-~~nvEaiAc 329 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRID-QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL-KLH-PINVEAIAC 329 (478)
T ss_pred CCchhHHHHHHHHHHHhc-cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH-hcC-Cccceeeee
Confidence 355668888999999999 99999999999998 55565556778888889999999999999988 543 456666777
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhcc
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGI 213 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~ 213 (311)
+...|.-.|+.|-|+..|+++.+ .+...|+.+.-+|.-.++++-++.-|++... .--.|+. ..|-.+-......
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~i 408 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTI 408 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEec
Confidence 77888888999999999998765 4778899999999999999999999999876 5445554 4577777888899
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER 264 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (311)
||+..|.+.|+.....+ .-+...+|.|.-.-.+.|++++|..++......
T Consensus 409 GD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 409 GDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999887775 457789999999999999999999999987753
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=2.1e-05 Score=62.26 Aligned_cols=190 Identities=9% Similarity=-0.111 Sum_probs=152.4
Q ss_pred hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHH
Q 037178 99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFT 175 (311)
Q Consensus 99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~ 175 (311)
+..-+.-.|...|+...|..-+++.. +.. +-+..++..+-..|-+.|+.+.|.+-|++.. ..+....|.--.=+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL-~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKAL-EHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 35556677889999999999999998 655 4567788999999999999999999999854 346677888888889
Q ss_pred hCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178 176 KNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 254 (311)
..|++++|...|++... ...-| -..||..+.-+..+.|+.+.|.+.+.+..+.. +-...+.-.+.+...+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999877 33333 35688899888999999999999999988875 33456777888888999999999
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 255 VKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 255 ~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...++.... .+....-..|..--+.|+.+.+.+.=..+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999988775 34444555566677788888877766666
No 66
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=1e-05 Score=78.41 Aligned_cols=219 Identities=11% Similarity=0.006 Sum_probs=175.3
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADL-----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII 135 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 135 (311)
+...|-.-|..+.+.+ +.++|.+++++... +.+. ...|.++++.-...|.-+...++|+++. +.. -...+
T Consensus 1457 SSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qyc--d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QYC--DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hhc--chHHH
Confidence 4456889999999999 99999999999988 5443 2357777777777788889999999998 543 34567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC---cchHHHHHHH
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD---NFTFPCVIKA 209 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~t~~~li~~ 209 (311)
|..|...|.+.++.++|-++|+.|.++ ....|...+..+.+.++-++|..++++..+ .-|. .....-.+.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHH
Confidence 889999999999999999999999864 667899999999999999999999999876 3454 2334455555
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCCcc
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL------VSWNSIICGFSENGFSC 283 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~y~~li~~~~~~g~~~ 283 (311)
-.+.|+.++++.+|+...... +--...|+.+|++-.+.|+.+.++++|++..+... ..|..-+.---+.|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 679999999999999998875 44678999999999999999999999999886332 35666665555666655
Q ss_pred hHHHH
Q 037178 284 ESFDL 288 (311)
Q Consensus 284 ~a~~l 288 (311)
.++.+
T Consensus 1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred hHHHH
Confidence 54443
No 67
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.54 E-value=1.1e-07 Score=52.82 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD 199 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 199 (311)
+||++|.+|++.|++++|.++|++|.+ .|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCC
Confidence 577777777777777777777777777 777776
No 68
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.54 E-value=2.8e-05 Score=72.40 Aligned_cols=228 Identities=14% Similarity=0.122 Sum_probs=132.4
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...|-.|-..|-+.| +.++++..+-..-. .+.|...|..+-....+.|.++.|.-.|.++. +.. +++...+=--
T Consensus 171 ~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI-QAN-PSNWELIYER 247 (895)
T ss_pred cchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH-hcC-CcchHHHHHH
Confidence 34455666666666666 66666666555444 45555666666666666666666666666666 443 2333332234
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC--------------------------------------------ChHHHHHHHHHHH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTR--------------------------------------------NLFQWNALVSGFT 175 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~--------------------------------------------~~~~y~~li~~~~ 175 (311)
...|-+.|+...|...|.++.+. +...+|.++..|.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 55555666666665555554321 2233667777777
Q ss_pred hCCChhhHHHHHHHhhhcCCCC----------------------CCcchHH----HHHHHHhccCChhhHHHHHHHHHHh
Q 037178 176 KNELYTDVLSIFVELSSDTELK----------------------PDNFTFP----CVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~----------------------p~~~t~~----~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
+...++.|.....++.. .... |+...|. -++-++.+....+....+...+.+.
T Consensus 328 ~~~q~d~~~~~i~~~~~-r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRN-RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HhHHHHHhhHHHHHHhc-cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 77777777777666654 1111 1112221 1222334444444555555555555
Q ss_pred CC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 230 GL--IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 230 g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+ .-++..|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|..+.|.+.|+..
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 53 23566777777777777777777777777764 35566777777777777777777777776
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=3.3e-05 Score=67.63 Aligned_cols=218 Identities=10% Similarity=-0.026 Sum_probs=140.5
Q ss_pred HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHH---HHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 72 TLCEESKSLNKALSLLQENLH-NADLKEATGV---LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
.+...| ++++|.+++++..+ .+.|...+.. ........+..+.+.+.++.. ....+........+...+...|
T Consensus 52 ~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAG-DLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC
Confidence 455778 99999999999888 5555545442 222222345555555555542 2222333445556777889999
Q ss_pred ChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHH
Q 037178 148 FPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 148 ~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~ 222 (311)
++++|...+++..+ .+...+..+...+...|++++|...+++........|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998763 366788999999999999999999999886512112332 2455788889999999999999
Q ss_pred HHHHHHhCC-CCcHHHH-H--HHHHHHHhcCCHHHHHHH---HhhCCC--C-ChhhHH--HHHHHHHhCCCcchHHHHHH
Q 037178 223 HGMAAKMGL-IGDVFVS-N--ALIAMYGKCAFVEEMVKL---FEVMPE--R-NLVSWN--SIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 223 ~~~m~~~g~-~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~--~-~~~~y~--~li~~~~~~g~~~~a~~l~~ 290 (311)
+++...... .+..... + .++.-+...|..+.+.+. ...-.. + ....++ ....++...|+.+.|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999864432 1222111 1 333344444533333332 111111 1 122233 56777888999999999999
Q ss_pred hh
Q 037178 291 KM 292 (311)
Q Consensus 291 ~m 292 (311)
.+
T Consensus 289 ~l 290 (355)
T cd05804 289 AL 290 (355)
T ss_pred HH
Confidence 98
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=3.5e-06 Score=71.18 Aligned_cols=194 Identities=15% Similarity=0.031 Sum_probs=133.4
Q ss_pred CCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CC-CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH
Q 037178 59 ASTQGLHFLQEITTLCEESKSLNKALSLLQENLH--NA-DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII 135 (311)
Q Consensus 59 ~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 135 (311)
..|.......+...+...+ +-+.++.-++.... .. .+..........+...|++++|.+++... .+...
T Consensus 62 ~~~~l~av~~la~y~~~~~-~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~ 133 (290)
T PF04733_consen 62 SSPELQAVRLLAEYLSSPS-DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLEL 133 (290)
T ss_dssp SSCCCHHHHHHHHHHCTST-THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHH
T ss_pred CChhHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccH
Confidence 3555555544444443334 56666666655544 22 23333333445667889999888876532 34556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCC--ChH---HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKTR--NLF---QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
....+..|.+.++++.|.+.++.|.+- |.. ...+++..+...+++.+|..+|+++.+ ...++..+.+.+..++
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHH
Confidence 667899999999999999999999853 332 234445554455689999999999875 3567888899999999
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHhhCCC
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV-EEMVKLFEVMPE 263 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 263 (311)
...|++++|.+++.+....+ +-+..+...++.+..-.|+. +.+.+.+.++.+
T Consensus 212 l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999987655 44677777788888888887 778889998874
No 71
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.51 E-value=1.3e-07 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCC
Q 037178 266 LVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIP 301 (311)
Q Consensus 266 ~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P 301 (311)
+.+||++|.+|++.|+++.|.++|++| ++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M--~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEM--KEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHH--HHhCCCC
Confidence 368999999999999999999999999 7899998
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-05 Score=69.68 Aligned_cols=211 Identities=9% Similarity=-0.031 Sum_probs=165.1
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--C-CCchhhH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--Q-FSNDFII 135 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g-~~~~~~~ 135 (311)
....++|-++---|.--| +..+|.+.|.+... .+.-...|....+.++-.|.-+.|...+..+- +. | ..|. .
T Consensus 309 P~~a~sW~aVg~YYl~i~-k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa-rl~~G~hlP~--L 384 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIG-KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA-RLMPGCHLPS--L 384 (611)
T ss_pred CCCCcchhhHHHHHHHhc-CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH-HhccCCcchH--H
Confidence 346678988888888889 99999999998887 44446678889999999999999988888765 32 1 2232 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-CCCC----CcchHHHHH
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDT-ELKP----DNFTFPCVI 207 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~t~~~li 207 (311)
| +---|.+.+.++.|.+.|.+.. ..|....+-+.-.....+.+.+|...|+...... .+.+ -.-+++.|-
T Consensus 385 Y--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 385 Y--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462 (611)
T ss_pred H--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence 2 4556788899999999998865 3477888888877788899999999998875311 1111 234688999
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHH
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP--ERNLVSWNSIICGFS 277 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~y~~li~~~~ 277 (311)
.++.+.+.+++|...++...... +-+..+|.++.-.|...|+++.|.+.|.+.. +||-.+-..+++-+.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999988875 6689999999999999999999999999887 576655555555443
No 73
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=2.9e-07 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP 198 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p 198 (311)
.+||++|.+|++.|+++.|.++|++|++ .|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence 4566666666666666666666666666 66665
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.44 E-value=8.1e-06 Score=76.44 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=125.2
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCChh------hHHHHHHhcccCCChhHHHHHHHHHHhhcCC
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-----NADLKE------ATGVLLQACGHEKDIEIGKRVHELVSASTQF 129 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~ 129 (311)
......|.+-.-+...| ++++|...|..... ..+|.. +---+.+..-..++.+.|.+.|..+. +..
T Consensus 450 ip~E~LNNvaslhf~~g-~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il-keh- 526 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLG-NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL-KEH- 526 (1018)
T ss_pred CCHHHHHhHHHHHHHhc-ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHC-
Confidence 56667888888888999 99999999988776 223332 22224445556678888888888887 432
Q ss_pred Cchh-hHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH
Q 037178 130 SNDF-IINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC 205 (311)
Q Consensus 130 ~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~ 205 (311)
|+- ..|--|...--..+...+|...++...+ .+...|+-+-..+.+...+..|.+-|+...+..-..+|.++...
T Consensus 527 -p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 527 -PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred -chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 221 1222222112223566677777766542 34445555555555555666666555554331222244444444
Q ss_pred HHHHHh------------ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHH
Q 037178 206 VIKACG------------GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWN 270 (311)
Q Consensus 206 li~~~~------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~ 270 (311)
|-+.|. ..+..++|.++|...++.. +-|...-|-+.-.++..|++.+|..||.+..+ .+..+|-
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l 684 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence 444332 1223445555555555443 33555555555555556666666666655554 2334555
Q ss_pred HHHHHHHhCCCcchHHHHHHhh
Q 037178 271 SIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 271 ~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+..+|+..|++..|+++|+.-
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.1e-05 Score=70.28 Aligned_cols=189 Identities=11% Similarity=0.055 Sum_probs=150.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
|--+-.+|+... +.++....|..... .+-|+.+|..-.....-.+++++|..-|+..+ ... +-+...|--+--+..
T Consensus 363 yI~~a~~y~d~~-~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai-~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADEN-QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI-SLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhh-ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-hcC-hhhhHHHHHHHHHHH
Confidence 777777899999 99999999999999 66677888888777778889999999999988 544 345667766777777
Q ss_pred hcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-------cchH--HHHHHHHhc
Q 037178 145 LCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-------NFTF--PCVIKACGG 212 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~t~--~~li~~~~~ 212 (311)
|.+++++++..|++.+++ -...||-....+...++++.|.+.|+...+ +.|+ ..++ -.++- +.-
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~-~qw 515 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLV-LQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhh-hch
Confidence 889999999999998753 557899999999999999999999998765 3343 1111 11111 123
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+++..|..++....+.. +-....|-.|...-...|++++|.++|++-.
T Consensus 516 k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 489999999999887765 4467899999999999999999999999754
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=2e-05 Score=64.77 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPE--RN----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+...|.+.|++++|...+++..+ |+ ...+..+..++...|+.++|..+++.+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455678899999999999998864 32 358889999999999999999999988
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.39 E-value=0.00025 Score=64.57 Aligned_cols=226 Identities=11% Similarity=0.083 Sum_probs=156.7
Q ss_pred Cccc-HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhH-HHHHHhccc-----CCChhHHHHHHHHHHhhcC------
Q 037178 62 QGLH-FLQEITTLCEESKSLNKALSLLQENLHNADLKEAT-GVLLQACGH-----EKDIEIGKRVHELVSASTQ------ 128 (311)
Q Consensus 62 ~~~~-~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~-~~ll~~~~~-----~~~~~~a~~~~~~m~~~~g------ 128 (311)
|..+ .......+.+.| +.++|..+|..+....|+...| ..+..+..- ..+.+...++++++.....
T Consensus 36 Dk~~~~E~rA~ll~kLg-~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~ 114 (517)
T PF12569_consen 36 DKLAVLEKRAELLLKLG-RKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR 114 (517)
T ss_pred CHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence 4333 455666778889 9999999999999955555555 444444421 2246667777777652211
Q ss_pred -----CCch-------------------hhHHHHHHHHHHhcCChhHHHHHHHhcC------------------CCCh--
Q 037178 129 -----FSND-------------------FIINTRLITMYSLCGFPLDSRRVFDSLK------------------TRNL-- 164 (311)
Q Consensus 129 -----~~~~-------------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~------------------~~~~-- 164 (311)
+..+ +.+++.|-..|....+.+-..+++..+. .|..
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL 194 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence 0000 1233334444443333344444444431 1223
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.+|.-+...|-..|++++|++.+++..+ ..|+ ...|.+-.+.+-+.|++++|.+.++...+.. .-|..+-+....
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aK 270 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHH
Confidence 2446678888899999999999999876 4576 4578888899999999999999999998887 458999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCh----------hhH--HHHHHHHHhCCCcchHHHHHHhh
Q 037178 244 MYGKCAFVEEMVKLFEVMPERNL----------VSW--NSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~~~----------~~y--~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+.++|++++|.+++......+. ..| .....+|.+.|++..|++-|...
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999988876442 133 44567899999999988877666
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.35 E-value=0.0003 Score=63.77 Aligned_cols=223 Identities=11% Similarity=-0.037 Sum_probs=156.6
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
.+|+.--..|.+.+ .++-|..+|....+ .+-+...|......--..|..+....++..+. .. ++-....|-...+-
T Consensus 517 ~tw~~da~~~~k~~-~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav-~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRP-AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV-EQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcc-hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-Hh-CCcchhHHHHHHHH
Confidence 35666667777777 78888888888777 55666777777776667788888888888876 33 34555666667777
Q ss_pred HHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 143 YSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
+...|++..|..++.+.-+ .+...|-+-+..-..+..++.|..+|.+... ..|+...|.--+..---.+.+++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHH
Confidence 7788888888888877643 2556777788888888888888888887754 567777776666666666777777
Q ss_pred HHHHHHHHHh---------------------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 037178 220 SGVHGMAAKM---------------------------------GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--- 263 (311)
Q Consensus 220 ~~~~~~m~~~---------------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 263 (311)
.+++++..+. .++.....|-.|.+.--+.|.+-.|..++++..-
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 7777665543 1222344455555555555666666666665542
Q ss_pred CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 264 RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 264 ~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.|...|-..|..-.+.|..+.|..++.+.
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888888889999988888887777
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=7.8e-06 Score=72.50 Aligned_cols=214 Identities=13% Similarity=0.061 Sum_probs=164.9
Q ss_pred HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178 73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD 151 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 151 (311)
+.+.| ++.+|.=.|+.... .+-+...|--|.......++-..|+..+.+.. +.. +-+..+.-+|--.|...|.-.+
T Consensus 295 lm~nG-~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl-~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNG-DLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL-ELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcC-CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH-hcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 45778 89999999998888 66678889988888888888888999888887 554 4466777778888899999999
Q ss_pred HHHHHHhcCC--C----------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 152 SRRVFDSLKT--R----------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 152 A~~l~~~m~~--~----------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
|.+.|+.... | +...-+. +.+.....+....++|-++-...+.++|...+..|---|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999887631 1 1110000 233334455677778877765466556666677777777888999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLV-SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~-~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...|+..+... +-|..+||-|...++...+-++|...|++..+ |+.+ ++-.|.-+|...|.+++|.+.|-+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999998876 66889999999999999999999999999985 7654 6666777889999999998877654
No 80
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00014 Score=63.65 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=109.0
Q ss_pred HHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhh
Q 037178 143 YSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGF 218 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~ 218 (311)
+...|+.++|++.++.+. .| |..-+......+.+.|+.++|.+.++++.. ..|+. ...-.+-.++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence 445688999999998875 34 666777888899999999999999999976 66774 456677788999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|..++++..... +-|...|..|-.+|.+.|+..+|..-. -.+|...|+++.|...+...
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999887765 778899999999999999998888744 46788889999998888887
No 81
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=1.1e-05 Score=73.42 Aligned_cols=208 Identities=8% Similarity=-0.024 Sum_probs=149.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 68 QEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
.+...+...| -..+|+.+|++. ..|.-+|.+|+..|+..+|..+..+-. + -+||...|..|.+......
T Consensus 403 ~laell~slG-itksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLG-ITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcc-hHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhhccChH
Confidence 4455666778 889999999874 456777888888898888988888877 4 3788899998888888888
Q ss_pred ChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178 148 FPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
-+++|.++++..-.+ +-..+.....++++++++.+.|+.-.+ +.| -..||-.+-.+..+.++++.|.+.|..-
T Consensus 472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 888888888775433 111111122336788888888877654 223 3456666666677778888888777766
Q ss_pred HHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178 227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMM 293 (311)
Q Consensus 227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 293 (311)
.... +-+...||.+-.+|.+.|+-.+|...+.+..+ .+...|...+....+-|.+++|++.+.+|.
T Consensus 546 vtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 546 VTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5543 44567888888888888888888888888775 444567777777888888888888887773
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=7.7e-05 Score=65.05 Aligned_cols=232 Identities=9% Similarity=-0.047 Sum_probs=113.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
++..|---+.+=.+.. .+..|..+|++... .+.-...|--.+..--..|++..|.++|+.-. ...|+...|++.|
T Consensus 106 ~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI 181 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFI 181 (677)
T ss_pred cchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHH
Confidence 3334444444444444 55555555555544 22222233333333334455555555555443 2245555555555
Q ss_pred HHHHhcCChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCcchHHHHHHHHhccCChh
Q 037178 141 TMYSLCGFPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK-PDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~t~~~li~~~~~~g~~~ 217 (311)
+.=.+-..++.|..++++.. .|++.+|--...-=-+.|+...|..+|+...+..|-. -+...|.+...-=.+...++
T Consensus 182 ~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 4555555554444445555555555555543311110 01122222222223444455
Q ss_pred hHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHh--------hCCC---CChhhHHHHHHHHHhCCCcch
Q 037178 218 FGSGVHGMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFE--------VMPE---RNLVSWNSIICGFSENGFSCE 284 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~---~~~~~y~~li~~~~~~g~~~~ 284 (311)
.|.-++....+. ++-+ ...|..+...--+-|+.....+..- ++.. -|..+|--.+.---..|+.+.
T Consensus 262 Rar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~ 340 (677)
T KOG1915|consen 262 RARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDR 340 (677)
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHH
Confidence 555555554443 2222 3444444444334444433333221 1111 255677778888888899999
Q ss_pred HHHHHHhhhhccCCCCC
Q 037178 285 SFDLLIKMMGCEEGFIP 301 (311)
Q Consensus 285 a~~l~~~m~~~~~g~~P 301 (311)
..++|++. . .++.|
T Consensus 341 Ire~yErA--I-anvpp 354 (677)
T KOG1915|consen 341 IRETYERA--I-ANVPP 354 (677)
T ss_pred HHHHHHHH--H-ccCCc
Confidence 99999998 3 45666
No 83
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.7e-05 Score=74.35 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=118.6
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh------------
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL------------ 145 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~------------ 145 (311)
...+|...++.... ...++..+..+...+.....+..|..-|+.+..+....+|.++.-+|.+.|.+
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 45555555555555 44444444444445555555555555444444222233565655556665542
Q ss_pred cCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178 146 CGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 222 (311)
.+..++|.++|.+..+ .|..+-|-+..+++..|++.+|..+|.+.++ ... -+..+|..+.++|...|++..|.++
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE-a~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE-ATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH-HHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 2446677777776553 3667777788888888888888888888876 433 3445677888888888888888888
Q ss_pred HHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 223 HGMAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 223 ~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
|+...+. +-..+..+.+.|..++-++|++.+|.+......
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8776544 434567888888888888888888888776655
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.32 E-value=6.3e-05 Score=70.13 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=131.2
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----CCh---------------
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----RNL--------------- 164 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~--------------- 164 (311)
++.+...++.+.|.+.++....+.+-.-+...++.+...|.+..+++.|......+.. +|.
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 3334444444555555555552233344556677788888888888888777766543 111
Q ss_pred -------HHHH----HHHHHHHhCCChhhHHHHHHHhhhcCCCCC--CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178 165 -------FQWN----ALVSGFTKNELYTDVLSIFVELSSDTELKP--DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL 231 (311)
Q Consensus 165 -------~~y~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 231 (311)
.+|+ -++-++......+....+...... .++.| +..-|.-+.+++...|++.+|..++..+.....
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1121 123334444444444444444444 55434 456799999999999999999999999988766
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 232 IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.-+..+|-.+..+|...|..++|.+.|+...+ | +...--+|-..+-+.|+.++|.+.++.|
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 66788999999999999999999999999986 3 3345556777889999999999999998
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=6.9e-05 Score=61.60 Aligned_cols=183 Identities=9% Similarity=-0.116 Sum_probs=110.9
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCC-Ch---hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh-h
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNAD-LK---EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF-I 134 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~-~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~ 134 (311)
......+-.+...+...| ++++|...|++.....| +. .++..+..++...|++++|...++.+.+...-.+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG-DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445556777788888889 99999999988877333 32 356667778888899999999999887222211211 1
Q ss_pred HHHHHHHHHHhc--------CChhHHHHHHHhcCC--CCh-HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 135 INTRLITMYSLC--------GFPLDSRRVFDSLKT--RNL-FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 135 ~~~~ll~~~~~~--------g~~~~A~~l~~~m~~--~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
++..+..++.+. |+.++|.+.|+.+.+ |+. ..+..+.. ...+.. . .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--------------~~~~~~-~---~~-~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR--------------MDYLRN-R---LA-GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH--------------HHHHHH-H---HH-HHH
Confidence 333344444443 566777777766542 221 12211111 000000 0 00 001
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKMGL--IGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..+...+.+.|++++|...+....+..- +.....+..+...|.+.|++++|...++.+.
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345567777888888888888776531 2235677788888888888888888777654
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=0.00032 Score=56.65 Aligned_cols=164 Identities=12% Similarity=-0.048 Sum_probs=128.8
Q ss_pred ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHH
Q 037178 96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVS 172 (311)
Q Consensus 96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~ 172 (311)
|... .-.-..+...|+-+....+..... ...+-|....+.+.....+.|++.+|...|.+... +|..+|+.+--
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 4444 455556666777777777766654 23355666777788888999999999999998763 58899999999
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
+|-+.|++++|..-|.+..+ +.|+ ...++.+.-.+.-.|+.+.|+.++......+ .-|..+-..+.......|++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 99999999999999988876 5665 4567888888888999999999998887765 44777888888889999999
Q ss_pred HHHHHHHhhCCCCCh
Q 037178 252 EEMVKLFEVMPERNL 266 (311)
Q Consensus 252 ~~A~~~~~~m~~~~~ 266 (311)
++|.++...-..+..
T Consensus 219 ~~A~~i~~~e~~~~~ 233 (257)
T COG5010 219 REAEDIAVQELLSEQ 233 (257)
T ss_pred HHHHhhccccccchh
Confidence 999999887765433
No 87
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.30 E-value=0.00039 Score=63.09 Aligned_cols=226 Identities=13% Similarity=0.013 Sum_probs=137.9
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
+...|-+-+..-.+.. .+++|..+|.+.+...|+...|.--++.---.+..++|.+++++.. +. ++.=...|-.+..
T Consensus 617 seeiwlaavKle~en~-e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-k~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFEND-ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL-KS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccc-cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-Hh-CCchHHHHHHHhH
Confidence 4445555555555555 6666666666655544444444444444444555566666665554 21 1122234445555
Q ss_pred HHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 142 MYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
.+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|..-+|..++++-+- .+ .-|...|...|+.=.+.|..+.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl-kN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL-KN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh-cC-CCcchhHHHHHHHHHHcCCHHH
Confidence 55555666666666555432 2 444566666666677777888888877654 22 2356677788888888888888
Q ss_pred HHHHHHHHHHh-----------------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---h
Q 037178 219 GSGVHGMAAKM-----------------------------GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN---L 266 (311)
Q Consensus 219 a~~~~~~m~~~-----------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~ 266 (311)
|..+..+..+. .+..|..+.-++...|....++++|.+.|.+..+.| -
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 87776665553 224455555566666666667788888888777532 2
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+|--+...+.++|.-++-.+++..-
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57777788888888777777777665
No 88
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.29 E-value=6.3e-07 Score=48.21 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKMMGCEEGF 299 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~ 299 (311)
++||+||++|++.|++++|.++|++| .+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M--~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEM--RERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHH--hHCcC
Confidence 47888888888888888888888888 66664
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=0.00021 Score=62.63 Aligned_cols=195 Identities=11% Similarity=0.003 Sum_probs=134.0
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhh---HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH-
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEA---TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR- 138 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~- 138 (311)
..|..+...+...| +.+.+...+.+... .+.+... .......+...|++++|.+++++.. +.. +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~-P~~~~a~~~~ 83 (355)
T cd05804 7 LGHAAAALLLLLGG-ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL-DDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-CCcHHHHHHh
Confidence 34666666777778 88888777777666 3333222 2222334567899999999999988 443 334444442
Q ss_pred --HHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhc
Q 037178 139 --LITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGG 212 (311)
Q Consensus 139 --ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~ 212 (311)
+.......|..+.+.+.++.... + .......+...+...|++++|...+++..+ ..|+ ...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHH
Confidence 22222234666677777765332 2 334455667788899999999999999976 3454 5567788889999
Q ss_pred cCChhhHHHHHHHHHHhCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178 213 IADVGFGSGVHGMAAKMGL-IGDV--FVSNALIAMYGKCAFVEEMVKLFEVMPER 264 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (311)
.|++++|..+++...+..- .++. ..|..+...+...|++++|.+++++...+
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999998876532 2232 34567888999999999999999998753
No 90
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.0005 Score=59.02 Aligned_cols=221 Identities=9% Similarity=-0.038 Sum_probs=151.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
++.+-..+...+ ..++|+.+..++....|+ ..+|+.--..+...| +++++...++.+. +.. +-+..+|+..--.+
T Consensus 40 ~~~~ra~l~~~e-~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDE-RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA-EDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH-HHC-CcchHHhHHHHHHH
Confidence 344444455566 999999999999984444 445665555555666 5799999999988 554 44555676555555
Q ss_pred HhcCCh--hHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc---CC
Q 037178 144 SLCGFP--LDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI---AD 215 (311)
Q Consensus 144 ~~~g~~--~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~---g~ 215 (311)
.+.|+. +++..+++.+.+ .|..+|+....++...|+++++++.++++.+ .+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE-EDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 677888877653 5788999999999999999999999999987 4332 334455444444443 33
Q ss_pred h----hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC----
Q 037178 216 V----GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC----AFVEEMVKLFEVMPE---RNLVSWNSIICGFSENG---- 280 (311)
Q Consensus 216 ~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g---- 280 (311)
. ++...+...+.+.. +-|...|+-+...|... ++..+|.+.+.+..+ .+......|+..|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 3 35666666666654 55788999888888773 445668888877654 34567788888888643
Q ss_pred --------------CcchHHHHHHhh
Q 037178 281 --------------FSCESFDLLIKM 292 (311)
Q Consensus 281 --------------~~~~a~~l~~~m 292 (311)
..++|.++++.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHH
Confidence 235688888777
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.25 E-value=0.00049 Score=62.28 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-------hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 236 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLV-------SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..|..+.+.|-..|+++.|..+|++..+.+.. +|-.-...-.++.+++.|+++++..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 56667778888888888888888888874433 3444444445667777788777666
No 92
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.22 E-value=1.4e-06 Score=46.85 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
+||++|++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 455555555555555555555555554
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.00026 Score=66.88 Aligned_cols=144 Identities=6% Similarity=-0.117 Sum_probs=82.5
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNA 169 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~ 169 (311)
...+...+..+.....+.|..++|..+++... +.. +-+......+...+.+.+++++|+..+++..+ | +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH-QRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 33446666666666666666666666666665 332 22333444566666666666666666666553 2 4445556
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 242 (311)
+..++.+.|++++|..+|++... ..|+ ..++..+-.++-+.|+.++|...|+...+.- .+...-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 66666666666666666666654 2233 4556666666666666666666666665542 33334444433
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=5.4e-05 Score=60.41 Aligned_cols=116 Identities=8% Similarity=-0.070 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHH-HhCCC--hhhH
Q 037178 110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGF-TKNEL--YTDV 183 (311)
Q Consensus 110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~-~~~g~--~~~a 183 (311)
.++.+++...++... +.. +.|...|..|...|...|++++|...|++..+ .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L-~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKI-RAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 333444444444443 222 33444555555555555555555555554331 2444444444432 34444 2555
Q ss_pred HHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 184 LSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 184 ~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
.+++++..+ ..| +...+..+...+.+.|++++|...++.+.+..
T Consensus 130 ~~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555555543 223 23344444455555555555555555555443
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=6.1e-05 Score=68.80 Aligned_cols=202 Identities=12% Similarity=0.010 Sum_probs=159.2
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
..|..+|.+|+..| +..+|..+..+-.+-+||+..|..+........-+++|.++.++.-.+ .--.+-...
T Consensus 425 emw~~vi~CY~~lg-~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~ 495 (777)
T KOG1128|consen 425 EMWDPVILCYLLLG-QHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhcccc
Confidence 35889999999999 999999998887777899999999998888888888888888876522 111122222
Q ss_pred HhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhH
Q 037178 144 SLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a 219 (311)
...++++++.+.|+.-.+ | -..+|-.+-.+..+.+++..|.+.|..-.. ..||. ..||.+-.+|.+.|+-.+|
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 347899999999986432 2 556788888888899999999999998865 67765 5799999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHh
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIICGFSE 278 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~~~~~ 278 (311)
...+.+..+.+ .-+..+|-..+-.-.+.|.+++|.+.+.++.+ .|...-..++.+..+
T Consensus 573 ~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 573 FRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99999999888 56778888999999999999999999998874 344444444444433
No 96
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=5.5e-05 Score=66.28 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA 214 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g 214 (311)
.-.+|++.+...++++.|..+|+++.+.+....-.++..+...++-.+|.+++++... . .+-+......-.+.+.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~-~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK-E-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhcC
Confidence 3445666677779999999999999877666777788888888999999999988875 2 2224445555556688999
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+.+.|.++.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999988774 4466799999999999999999999998776
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=3.3e-05 Score=62.26 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL 145 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~ 145 (311)
..+-.++-..| +-+.+..+..+... .+.|....+..++...+.|++..|...+.+.. ... ++|..+|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G-~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRG-DADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcc-cccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccC-CCChhhhhHHHHHHHH
Confidence 44555566666 66666666666555 55566666667777777788888877777776 333 6777778877777788
Q ss_pred cCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178 146 CGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 222 (311)
.|++++|..-|.+.. ..+...+|.+.-.+.-.|+.+.|..++..... .+ .-|...-..+.-+....|++++|+.+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-SP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-CC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888777777654 23556677777777777788888877777664 22 22555566677777777777777776
Q ss_pred HHH
Q 037178 223 HGM 225 (311)
Q Consensus 223 ~~~ 225 (311)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
No 98
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.00036 Score=61.02 Aligned_cols=68 Identities=9% Similarity=-0.038 Sum_probs=59.9
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ 128 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g 128 (311)
+|+..+|++.|+.=.+-. .++.|.+++++..-+.|++.+|.-..+.--+.|.+..+.++|+.+.+..|
T Consensus 171 ~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred CCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 689999999999999999 99999999999888779999999988888889999999999988874444
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.00016 Score=62.71 Aligned_cols=197 Identities=10% Similarity=0.051 Sum_probs=95.4
Q ss_pred hcCCCHHHHHHHHHhhccCCCChhhHHHHH---HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178 75 EESKSLNKALSLLQENLHNADLKEATGVLL---QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD 151 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 151 (311)
..| ++++|.+.|++... -|...-.++. -.+-..|++++|.+.|-.+. .. +.-+..+.--+.+.|-...+...
T Consensus 502 ~ng-d~dka~~~ykeal~--ndasc~ealfniglt~e~~~~ldeald~f~klh-~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 502 ANG-DLDKAAEFYKEALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLH-AI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ecC-cHHHHHHHHHHHHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH-HH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 345 66666666666655 2222222221 12334566666666555443 11 12233333335555555555566
Q ss_pred HHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 152 SRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 152 A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
|.+++-+.. ..|.....-|...|-+.|+-..|++.+-+--+ -+.-|..|...|...|....=++++..+|++..
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa- 653 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA- 653 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence 666555433 23555555555556666665555555443321 122244455555555555555555555555432
Q ss_pred hCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 037178 229 MGLIGDVFVSNALIAMY-GKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENG 280 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g 280 (311)
-+.|+..-|..+|..| .+.|++.+|++++++... .|+....-|++.+...|
T Consensus 654 -liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 654 -LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred -hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 2455555555555433 334566666666655553 24444444444444333
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.14 E-value=5.7e-05 Score=57.04 Aligned_cols=88 Identities=14% Similarity=-0.046 Sum_probs=44.1
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA 214 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g 214 (311)
+...+...|++++|...|+.... .+...|..+..++.+.|++++|...|++... ..| +...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHcC
Confidence 44445555555555555554331 2444555555555555555555555555543 223 3344444555555555
Q ss_pred ChhhHHHHHHHHHHh
Q 037178 215 DVGFGSGVHGMAAKM 229 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~ 229 (311)
+.++|...++...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.11 E-value=0.00012 Score=58.47 Aligned_cols=144 Identities=9% Similarity=0.014 Sum_probs=103.0
Q ss_pred HHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCC
Q 037178 103 LLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNEL 179 (311)
Q Consensus 103 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~ 179 (311)
.+..|...|+++.+..-.+.+. .|. . .|...++.+++...+++.. ..|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-----~~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-----DPL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-----Ccc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Confidence 3445677788777644432222 111 1 2234566677776676644 2477889999999999999
Q ss_pred hhhHHHHHHHhhhcCCCCCC-cchHHHHHHHH-hccCC--hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 180 YTDVLSIFVELSSDTELKPD-NFTFPCVIKAC-GGIAD--VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
+++|...|++..+ ..|+ ...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|.
T Consensus 89 ~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 89 YDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHH
Confidence 9999999998866 4564 45666666664 56676 489999999988876 457788888888899999999999
Q ss_pred HHHhhCCC
Q 037178 256 KLFEVMPE 263 (311)
Q Consensus 256 ~~~~~m~~ 263 (311)
..|+++.+
T Consensus 165 ~~~~~aL~ 172 (198)
T PRK10370 165 ELWQKVLD 172 (198)
T ss_pred HHHHHHHh
Confidence 99998875
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=6.9e-05 Score=56.60 Aligned_cols=111 Identities=7% Similarity=-0.126 Sum_probs=69.5
Q ss_pred HHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---
Q 037178 85 SLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--- 161 (311)
Q Consensus 85 ~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--- 161 (311)
.+|++..+..|+. +......+...|++++|...|+... ... +.+...|..+..++.+.|++++|...|++..+
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLV-MAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3444444433332 3345555666777777777777766 443 34566666677777777777777777776543
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch
Q 037178 162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT 202 (311)
Q Consensus 162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t 202 (311)
.+...|..+..++.+.|++++|...|++... ..|+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~---~~p~~~~ 127 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK---MSYADAS 127 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChH
Confidence 2556677777777777777777777777655 4455433
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.00042 Score=65.47 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=130.5
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.++..+-.|..+..+.| ..++|..+++...+..|| ......+...+.+.+++++|....++.. ... +-+....+.+
T Consensus 84 ~~~~~~~~La~i~~~~g-~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAH-RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hcC-CCCHHHHHHH
Confidence 45667888888888999 999999999999994444 5677888888999999999999999988 544 4456667778
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV 216 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 216 (311)
-.++.+.|+.++|..+|++...+ +..++..+..++-+.|+.++|...|++..+ ...|....|+..+. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHHHH------HH
Confidence 88888999999999999998743 367888899999999999999999999865 23455566665544 33
Q ss_pred hhHHHHHHHHHHhC----CCCcHHHHHHHHHHHHhcC
Q 037178 217 GFGSGVHGMAAKMG----LIGDVFVSNALIAMYGKCA 249 (311)
Q Consensus 217 ~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g 249 (311)
..-..+++++.-.+ ......+...+|.-|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 33344555554333 2333455555666665544
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00011 Score=64.51 Aligned_cols=121 Identities=11% Similarity=0.055 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY 245 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 245 (311)
.-.+|+..+...++++.|..+|+++.+ .. |+ ....+++.+...++-.+|.+++.+..+.. +-+......-.+.|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE-RD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh-cC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345667777788999999999999987 33 55 44557888888888899999999988664 55788888888889
Q ss_pred HhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 246 GKCAFVEEMVKLFEVMPE--RN-LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~--~~-~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+.++.+.|.++.+++.+ |+ ..+|..|..+|.+.|+++.|+-.++.+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999986 54 469999999999999999999999877
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0012 Score=56.84 Aligned_cols=145 Identities=7% Similarity=-0.055 Sum_probs=89.4
Q ss_pred HhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH-HHHh-ccCChhh
Q 037178 144 SLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI-KACG-GIADVGF 218 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li-~~~~-~~g~~~~ 218 (311)
...|+.++|.-.|+... .| +...|..|+++|...|++.+|..+-.+... -+.-+..+.+.+- ..|. ...--++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHH
Confidence 34455555555554422 22 555666677777766766666655544322 1112333332221 1221 1122355
Q ss_pred HHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 219 GSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|.++++.-.+. .|+ ....+.+...+...|+.+++..+++.-.. +|.+..+.|-..+.-.+..++|++.|...
T Consensus 423 AKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 423 AKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666554433 343 56677788888889999999999988763 89999999999999999999988888766
No 106
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.04 E-value=9.4e-05 Score=51.88 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCCcchHHHHHHHHhccC--------ChhhHHHHHHHHHHhCCCCcHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTEL-KPDNFTFPCVIKACGGIA--------DVGFGSGVHGMAAKMGLIGDVF 236 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~ 236 (311)
+-...|..+...|++.....+|+.+++ .|+ .|+..+|+.++.+.++.. ++-+...+++.|...+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 334566677777999999999999999 999 899999999999887653 2345678999999999999999
Q ss_pred HHHHHHHHHHh
Q 037178 237 VSNALIAMYGK 247 (311)
Q Consensus 237 ~~~~li~~~~~ 247 (311)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 107
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=6.9e-05 Score=66.07 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=77.0
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-CC-----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RN-----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
+.+......+++.+....+++++..++-+... ++ ..|..++|..|.+.|..+++++++..=.. .|+-||.+||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~ 141 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSF 141 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhH
Confidence 34444555566666666666666666665542 11 12334777777777777777777777666 7777777777
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
+.+|+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666555666666655555554
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.03 E-value=0.00014 Score=54.05 Aligned_cols=91 Identities=4% Similarity=-0.110 Sum_probs=43.9
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHh
Q 037178 100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTK 176 (311)
Q Consensus 100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~ 176 (311)
...+...+...|+.++|.+.++.+. ..+ +.+...+..+...|.+.|++++|...|++.. ..+...|..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLA-AYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3344444445555555555555554 322 2344444445555555555555555554432 1233444444555555
Q ss_pred CCChhhHHHHHHHhhh
Q 037178 177 NELYTDVLSIFVELSS 192 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~ 192 (311)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.02 E-value=0.0002 Score=65.70 Aligned_cols=166 Identities=11% Similarity=0.068 Sum_probs=100.2
Q ss_pred HHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHH
Q 037178 73 LCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS 152 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 152 (311)
...+. .|.+|+.+++.+...+....-|..+..-|+..|+++.|.++|-+.- .++--|.+|.+.|+|++|
T Consensus 742 ai~ak-ew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAK-EWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred Hhhhh-hhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 33445 6777777777666533444557778888888888888888876542 234467788888888888
Q ss_pred HHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 153 RRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 153 ~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
.++-++...| .+..|-+-..-+-+.|++.+|.++|-.+.. |+. .|..|-+.|..++..++.++---.
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 8888776655 455666666666777777777777654433 432 345555666665555554332111
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 231 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.-..|..-+..-|-..|++.+|+.-|-+..
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 112233344444455555555555554443
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00082 Score=55.50 Aligned_cols=224 Identities=12% Similarity=-0.016 Sum_probs=130.0
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHH-HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVL-LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+......|-.+|-+.. ++..|-..++++....|...-|... ...+.+.+.+..|.++...|. .. ++...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~-D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLL-DN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc-CC---HHHHHHHHHH
Confidence 3334444444444555 5555555555554433333333221 223334444555555555444 11 1111111111
Q ss_pred HH--HHhcCChhHHHHHHHhcC-CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 141 TM--YSLCGFPLDSRRVFDSLK-TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 141 ~~--~~~~g~~~~A~~l~~~m~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
.+ ....|++..+..+.++.. +.+..+-+.......+.|++++|.+-|+...+..|..| ...|+..+.. .+.|+.+
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qya 195 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYA 195 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHH
Confidence 11 123355566666666665 34444555555556789999999999999888567665 4567766654 4568999
Q ss_pred hHHHHHHHHHHhCCC-------------Cc--------HHHHHHHHHH-------HHhcCCHHHHHHHHhhCCC-----C
Q 037178 218 FGSGVHGMAAKMGLI-------------GD--------VFVSNALIAM-------YGKCAFVEEMVKLFEVMPE-----R 264 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~-------------~~--------~~~~~~li~~-------~~~~g~~~~A~~~~~~m~~-----~ 264 (311)
.|.+...++.++|+. || ...-+.++.+ +-+.|+++.|.+.+.+|+- -
T Consensus 196 sALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~el 275 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 275 (459)
T ss_pred HHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccC
Confidence 999999999888652 12 1122334443 4578999999999999972 1
Q ss_pred C---------------------------------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 265 N---------------------------------LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 265 ~---------------------------------~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
| ..||-.++-.||++.-++-|-.++.+=
T Consensus 276 DPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 276 DPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 1 246667777888888888777776553
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.00031 Score=64.53 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE 252 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 252 (311)
+-.....|.+|+.+++.++. .+ .-..-|..+.+.|...|+++.|+++|-+. ..++--|++|.+.|+++
T Consensus 741 aai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33455666666666666654 21 22334566666666666666666666432 12345566666666666
Q ss_pred HHHHHHhhCCCCC--hhhHHHHHHHHHhCCCcchHHH
Q 037178 253 EMVKLFEVMPERN--LVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 253 ~A~~~~~~m~~~~--~~~y~~li~~~~~~g~~~~a~~ 287 (311)
+|.++-++...|. .+.|-+-..-+-++|++.+|.+
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 6666666555432 2233333333333444444333
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00034 Score=52.85 Aligned_cols=121 Identities=10% Similarity=0.007 Sum_probs=64.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc--HHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD--VFVSNA 240 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ 240 (311)
|..++..+ ..++...+...++.+.. . .|+. ...-.+...+...|++++|...|+........++ ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~-~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAK-D--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH-H--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 44444444 25566666666666654 1 1222 2222344555666666666666666666542221 123334
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCCcchHHHHHHh
Q 037178 241 LIAMYGKCAFVEEMVKLFEVMPER--NLVSWNSIICGFSENGFSCESFDLLIK 291 (311)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~l~~~ 291 (311)
|...+...|++++|+..++....+ ....+...-..|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455566666666666666554432 223445555666666666666666654
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0013 Score=53.42 Aligned_cols=116 Identities=11% Similarity=-0.020 Sum_probs=52.4
Q ss_pred HHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh----ccCCh
Q 037178 141 TMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG----GIADV 216 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~----~~g~~ 216 (311)
..|+..|++++|++.......-+....| +..+.+..+++-|.+.+++|.+ - -+..|.+-|..++. ..+.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~-i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ-I---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc-c---chHHHHHHHHHHHHHHhccchhh
Confidence 3445555555555555542222222222 2223344455555555555544 1 12334443333332 22345
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
.+|.-+|++|-++ .+|+..+.|-...++...|++++|..++++..+
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555555555432 345555555555555555555555555555543
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00065 Score=51.33 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=78.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC---hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh--hHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADL---KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF--IINTR 138 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~~~~ 138 (311)
.|..++..+ ..+ +...+...++.+.. .+.+ ....-.+...+...|++++|...|+... .....++. ...-.
T Consensus 14 ~y~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAG-DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHHHHHHHHHH
Confidence 455666666 366 77777777777777 3333 2223334566677788888888888877 54422221 23334
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVE 189 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~ 189 (311)
|...+...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777778888888888765533 334566677777778888888777765
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00061 Score=55.28 Aligned_cols=168 Identities=11% Similarity=-0.015 Sum_probs=117.5
Q ss_pred HHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC
Q 037178 85 SLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162 (311)
Q Consensus 85 ~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 162 (311)
++.+.+.. ...+......-...|+..|++++|.+...... ..+.... =+..+.|..+++-|.+.+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444 33333334444556889999999988876522 3333333 356678889999999999999975
Q ss_pred -ChHHHHHHHHHHH----hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHH
Q 037178 163 -NLFQWNALVSGFT----KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFV 237 (311)
Q Consensus 163 -~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 237 (311)
+-.+.+-|..+|. ..++..+|+-+|++|.+ ...|+..+.+-...++...|++++|..++++...+.. .+..+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpet 243 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPET 243 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHH
Confidence 4456665555554 45789999999999963 4789999999999999999999999999999988863 35555
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHhhCC
Q 037178 238 SNALIAMYGKCAFV-EEMVKLFEVMP 262 (311)
Q Consensus 238 ~~~li~~~~~~g~~-~~A~~~~~~m~ 262 (311)
...+|-.-.-.|+- +-..+...+.+
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 55555555555554 33445555544
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.88 E-value=0.001 Score=65.87 Aligned_cols=227 Identities=8% Similarity=-0.110 Sum_probs=149.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCC--hhhHHHHHHhcccCCChhHHHHHHHHHHh---hcCCC--c-
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-----NADL--KEATGVLLQACGHEKDIEIGKRVHELVSA---STQFS--N- 131 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~--~- 131 (311)
.++.+-..+...| ++++|...+++... ..+. ..++..+...+...|+++.|...+++... ..+.. +
T Consensus 493 a~~~lg~~~~~~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 493 ATSVLGEVHHCKG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 3455666677889 99999999998876 1111 22344556667789999999999887662 12211 1
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCC------C--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT------R--NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~------~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
....+..+...+...|++++|...+++... + ....+..+...+...|++++|.+.+++...-.........+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 233455566677778999999988887532 1 23345556778888999999999988874310111111111
Q ss_pred -----HHHHHHHhccCChhhHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----h
Q 037178 204 -----PCVIKACGGIADVGFGSGVHGMAAKMGLIGD---VFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RN----L 266 (311)
Q Consensus 204 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~ 266 (311)
...+..+...|+.+.|.+++........... ...+..+..++...|+.++|...+++..+ .. .
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1122444567889999888766543221111 11245677788899999999999988764 11 2
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+...+..++.+.|+.++|...+.+.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35666777888999999999999888
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00078 Score=59.12 Aligned_cols=149 Identities=12% Similarity=0.011 Sum_probs=93.4
Q ss_pred HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHHHHHHhcCChh
Q 037178 73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLITMYSLCGFPL 150 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll~~~~~~g~~~ 150 (311)
+.+.| .+++|+..++.+.. .+.|+..+......+.+.++.++|.+.++.+. .. .|+ ....-.+-.+|.+.|+..
T Consensus 316 ~~~~~-~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAG-QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL-AL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhc-ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hc--CCCccHHHHHHHHHHHhcCChH
Confidence 33556 67777777777666 44455555566666777777777777777776 33 233 344444667777777777
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 151 DSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 151 ~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
+|...++.... .|...|..|..+|...|+..++..-..++. ...|++++|...+....
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~-------------------~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY-------------------ALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH-------------------HhCCCHHHHHHHHHHHH
Confidence 77777776552 266677777777777777777766655543 35567777777766665
Q ss_pred HhC--CCCcHHHHHHHHHH
Q 037178 228 KMG--LIGDVFVSNALIAM 244 (311)
Q Consensus 228 ~~g--~~~~~~~~~~li~~ 244 (311)
+.. -.|+..-+...|+.
T Consensus 453 ~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 453 QQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HhccCCcHHHHHHHHHHHH
Confidence 543 23344444555543
No 118
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.00015 Score=57.20 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=80.3
Q ss_pred ChhhHHHHHHhcc-----cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHH
Q 037178 96 LKEATGVLLQACG-----HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNAL 170 (311)
Q Consensus 96 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~l 170 (311)
|..+|..++..+. +.|.++-....+..|. +.|+..|..+|+.|++.+=+ |.+- -..+|..+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 4444444444443 5688999999999999 99999999999999998876 4332 112222211
Q ss_pred HHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh-hhHHHHHHHHH
Q 037178 171 VSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV-GFGSGVHGMAA 227 (311)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~ 227 (311)
- -.-.+-+-|++++++|.. .|+.||..|+..+++.+++.+.. .+..++.-.|-
T Consensus 113 -~--hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 -M--HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred -c--cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 0 112356788999999999 99999999999999999887753 33444444443
No 119
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0032 Score=54.36 Aligned_cols=192 Identities=8% Similarity=-0.016 Sum_probs=140.9
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
..|-.-....-... +++.|+.+-++..+ ...+...|..=.+.+...+++++|.-.|+..+ ..- +.+...|.-|+++
T Consensus 301 ~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ-MLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH-hcc-hhhHHHHHHHHHH
Confidence 33444444444556 78888888888777 44455666666667778899999999999987 433 4688999999999
Q ss_pred HHhcCChhHHHHHHHh----cCCCChHHHHHHH-HHHH-hCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCC
Q 037178 143 YSLCGFPLDSRRVFDS----LKTRNLFQWNALV-SGFT-KNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIAD 215 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~----m~~~~~~~y~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~ 215 (311)
|...|.+.+|.-+-+. |. .+..+.+.+- ..+. ....-++|..+++.-.. +.|+- ...+.+..-|...|.
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCc
Confidence 9999999998766543 33 2333333331 2222 22234788888887654 66763 456777788899999
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER 264 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (311)
.+++..+++.-... .||....+.|.+.+...+.+.+|++.|......
T Consensus 454 ~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 454 TKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999987765 789999999999999999999999999876643
No 120
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00018 Score=56.74 Aligned_cols=89 Identities=8% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHh-----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc----------------cCChhhH
Q 037178 161 TRNLFQWNALVSGFTK-----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG----------------IADVGFG 219 (311)
Q Consensus 161 ~~~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~----------------~g~~~~a 219 (311)
.+|-.+|..+|+.|.+ .|.++=....+..|.+ .|+.-|..+|+.|++.+=+ -.+.+-|
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 3455555555555543 2455555555666666 6666666666666666543 1245678
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
.+++++|...|+-||..++..+++.+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999999987664
No 121
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00029 Score=62.24 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDT-ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNAL 241 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 241 (311)
+.+....+++.+....+.+.+..++.+.+... ....-..|..++|+.|.+.|..+++..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 56677888888888889999999998887621 22233456679999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhC
Q 037178 242 IAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSEN 279 (311)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~~ 279 (311)
|+.+.+.|++..|.+++.+|.. .+..|+.-.+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999874 4556776666666665
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.80 E-value=0.0016 Score=62.60 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=143.0
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCCh-hhHHHHHHhcccCCChhHHHHH------------------H
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRV------------------H 120 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~------------------~ 120 (311)
..+...|..|+..+...+ ++++|.++.+...+..|+. ..|-.+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 28 LSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred cchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 445667999999999999 9999999999777744443 3333333355555555544444 2
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC
Q 037178 121 ELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK 197 (311)
Q Consensus 121 ~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 197 (311)
..|. .. .-+...+-.|..+|-+.|+.++|..+++++.+ .|..+.|.+...|... +.++|.+++.+... .-
T Consensus 107 ~~i~-~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-~~-- 179 (906)
T PRK14720 107 DKIL-LY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-RF-- 179 (906)
T ss_pred HHHH-hh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-HH--
Confidence 2222 11 12224556688888888999999999999874 4788899999999999 99999999888765 21
Q ss_pred CCcchHHHHHHHH-----hccCChhhHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhh
Q 037178 198 PDNFTFPCVIKAC-----GGIADVGFGSGVHGMAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVS 268 (311)
Q Consensus 198 p~~~t~~~li~~~-----~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~ 268 (311)
-+..-|+.+.... +...+++.-.++.+.+... |..--..++-.+-..|-+.++++++..+++...+ .|..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 1222333333321 2233455555555555544 4445567777778889999999999999999885 56667
Q ss_pred HHHHHHHHH
Q 037178 269 WNSIICGFS 277 (311)
Q Consensus 269 y~~li~~~~ 277 (311)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 777888776
No 123
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00036 Score=49.03 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=68.3
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 037178 101 GVLLQACGHEKDIEIGKRVHELVSASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNEL 179 (311)
Q Consensus 101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~ 179 (311)
...|..|...+++...-.+|..++ +.|+ .|+..+|+.++.+.++..--.+ .-.++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~k 84 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIENK 84 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHHH
Confidence 445666667789999999999998 8888 8899999998888877533221 11235
Q ss_pred hhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc
Q 037178 180 YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI 213 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~ 213 (311)
+-..+.+|++|.. .+++|+..||+.++..+.+.
T Consensus 85 l~~LLtvYqDiL~-~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 85 LTNLLTVYQDILS-NKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHh
Confidence 6678889999998 99999999999999987653
No 124
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0075 Score=54.36 Aligned_cols=207 Identities=9% Similarity=0.020 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH--HHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR--LITMYS 144 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~--ll~~~~ 144 (311)
+=++.+...| ++++|.....++.. .+.|...+..=+-+....+.+++|..+.+. .+ -..+++. +=.+||
T Consensus 17 t~ln~~~~~~-e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk----~~---~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 17 TDLNRHGKNG-EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK----NG---ALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHhccch-HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh----cc---hhhhcchhhHHHHHH
Confidence 3356677888 99999999999999 655667788888888888999988854432 22 1112222 244554
Q ss_pred --hcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc-cCChhhHHH
Q 037178 145 --LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG-IADVGFGSG 221 (311)
Q Consensus 145 --~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~-~g~~~~a~~ 221 (311)
+.+..++|...++...+-+..+...=...+.+.|++++|+++|+.+.+ .+. ..+..-+.+-+. .+-.-.+
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~----dd~d~~~r~nl~a~~a~l~~-- 161 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNS----DDQDEERRANLLAVAAALQV-- 161 (652)
T ss_pred HHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCC----chHHHHHHHHHHHHHHhhhH--
Confidence 679999999999966665665666667788899999999999999965 332 222222222111 1100011
Q ss_pred HHHHHHHhCCCCcHHHHHH---HHHHHHhcCCHHHHHHHHhhCC--------CCCh----------hhHHHHHHHHHhCC
Q 037178 222 VHGMAAKMGLIGDVFVSNA---LIAMYGKCAFVEEMVKLFEVMP--------ERNL----------VSWNSIICGFSENG 280 (311)
Q Consensus 222 ~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~--------~~~~----------~~y~~li~~~~~~g 280 (311)
+.+......| ..+|.. ....+...|++.+|+++++... +-|. .+---|...+-..|
T Consensus 162 --~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 --QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred --HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1122223333 223333 3345678899999999998872 1111 12334566777899
Q ss_pred CcchHHHHHHhh
Q 037178 281 FSCESFDLLIKM 292 (311)
Q Consensus 281 ~~~~a~~l~~~m 292 (311)
+-++|..++...
T Consensus 239 qt~ea~~iy~~~ 250 (652)
T KOG2376|consen 239 QTAEASSIYVDI 250 (652)
T ss_pred chHHHHHHHHHH
Confidence 999999999988
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.72 E-value=0.0031 Score=60.73 Aligned_cols=178 Identities=11% Similarity=0.006 Sum_probs=122.0
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CC-------
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TR------- 162 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~------- 162 (311)
.+.+...+..++..+...+++++|.++.+...+...-.+....+... .+...++.+++..+ .+. ..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 44456778999999999999999999999776222222333333333 67777777776655 222 11
Q ss_pred ------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 163 ------------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 163 ------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
+..++-.+..+|-+.|+.++|..+|+++.+ .. .-|....|.+...+... ++++|.+++....+.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 113456677788888899999999988877 33 22466788888888888 888888888776655
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------------------CChhhHHHHHHHHHhCCCcchHHH
Q 037178 231 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----------------------RNLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------~~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
|...+++.++.++|.++.+ +-+.++--+-..|-..++++++.+
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 4444555556665555553 223445556677788889999999
Q ss_pred HHHhh
Q 037178 288 LLIKM 292 (311)
Q Consensus 288 l~~~m 292 (311)
+++..
T Consensus 245 iLK~i 249 (906)
T PRK14720 245 ILKKI 249 (906)
T ss_pred HHHHH
Confidence 99988
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.71 E-value=0.00034 Score=52.01 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=81.6
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+......+...+...| ++++|.+.|+.... .+.+...+..+...+...|+++.|..+++... +.+ +.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCChHHHHHHH
Confidence 3444667778888999 99999999999988 66677888889999999999999999999987 554 55667777788
Q ss_pred HHHHhcCChhHHHHHHHhcCC
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT 161 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~ 161 (311)
.+|...|++++|.+.|+...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999988763
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0016 Score=58.30 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
..++|-++....+..+|..+++.|--.|--.|++++|...|+... +| |...||-|-..++...+.++|+..|.+..+
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 334444443233434555555555555555556666666555543 22 455566665555555555666666655544
Q ss_pred cCCCCCCc-chHHHHHHHHhccCChhhHHHHHHH
Q 037178 193 DTELKPDN-FTFPCVIKACGGIADVGFGSGVHGM 225 (311)
Q Consensus 193 ~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~ 225 (311)
++|+- ...-.|--+|...|.+++|.+.|-.
T Consensus 493 ---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 493 ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred ---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 44542 2222333345555555555554433
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00048 Score=46.70 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 169 ALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
.+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344444445555555555555433 1121 1334444444444455555555555444432 2222344444444455
Q ss_pred cCCHHHHHHHHhh
Q 037178 248 CAFVEEMVKLFEV 260 (311)
Q Consensus 248 ~g~~~~A~~~~~~ 260 (311)
.|+.++|...+++
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555444443
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0012 Score=51.50 Aligned_cols=114 Identities=9% Similarity=0.016 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.|..+...+...|++++|...|++... ....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 344444444444444444444444433 111111 1234444444444455555555444444432 122333344444
Q ss_pred HHHhcCC--------------HHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 037178 244 MYGKCAF--------------VEEMVKLFEVMPERNLVSWNSIICGFSENGF 281 (311)
Q Consensus 244 ~~~~~g~--------------~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~ 281 (311)
.|...|+ +++|.+++++..+.+...|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 4444433 4555666665555454445555555544443
No 130
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.00054 Score=57.87 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCC---hHHHHHHHHH-HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTRN---LFQWNALVSG-FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~---~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
+|..+|+..-+.+..+.|..+|.+..+.. ...|-..... |...++.+.|..+|+...+ . +.-+...+..-++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk-~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK-K-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-H-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHH
Confidence 44445555555555555555555544321 1122221111 1112344445555555443 1 222333444444444
Q ss_pred hccCChhhHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGD---VFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+.|+.+.|+.+|++.... +..+ ...|...++.-.+.|+++.+.++.+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555544433 1111 1345555554445555555555444444
No 131
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.68 E-value=0.0066 Score=60.20 Aligned_cols=220 Identities=10% Similarity=-0.034 Sum_probs=145.5
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCC-Ch----hhHHHHHHhcccCCChhHHHHHHHHHHhhc----CC-CchhhHHHHH
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NAD-LK----EATGVLLQACGHEKDIEIGKRVHELVSAST----QF-SNDFIINTRL 139 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~-~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~-~~~~~~~~~l 139 (311)
..+...| ++++|...+++... ... +. ...+.+...+...|++++|...+++.. .. |- .....++..+
T Consensus 460 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al-~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 460 QVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE-QMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhhhcchHHHHHHHHHH
Confidence 3455778 99999999998766 222 21 234555556678999999999988876 32 21 1123355566
Q ss_pred HHHHHhcCChhHHHHHHHhcCC-------C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCCCCC--cchHHH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT-------R----NLFQWNALVSGFTKNELYTDVLSIFVELSSD-TELKPD--NFTFPC 205 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~-------~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~t~~~ 205 (311)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++.... ....+. ...+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 7778889999999998876432 1 1233555666777889999999998886431 111122 234445
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCC-cHHHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCh-------hhHHHH
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIG-DVFVS-----NALIAMYGKCAFVEEMVKLFEVMPERNL-------VSWNSI 272 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~y~~l 272 (311)
+.......|+.++|.+.+.......-.. ....+ ...+..+...|+.+.|.+.+.....+.. ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6667788999999999988875431111 11111 1123455668999999999887765321 113466
Q ss_pred HHHHHhCCCcchHHHHHHhh
Q 037178 273 ICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 273 i~~~~~~g~~~~a~~l~~~m 292 (311)
..++...|+.++|..++++.
T Consensus 698 a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77888999999999999887
No 132
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.66 E-value=0.017 Score=52.71 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=80.9
Q ss_pred CChhhHHHHHHHhhhcCCCCCCc------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc---HHHHHHHHHHHHhc
Q 037178 178 ELYTDVLSIFVELSSDTELKPDN------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD---VFVSNALIAMYGKC 248 (311)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 248 (311)
|+..+...+|.+... .+.|.. ..|..+.+-|-..|+++.|+.+|+...+-..+-- ..+|..-.++-.+.
T Consensus 361 ~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 455566666666543 344432 2466777778899999999999998877665433 46777777778888
Q ss_pred CCHHHHHHHHhhCCC---------------------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 249 AFVEEMVKLFEVMPE---------------------RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 249 g~~~~A~~~~~~m~~---------------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+++.|+++.+...- ++...|...++---..|-++....+++++
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999887652 23456777777767778888888888888
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0079 Score=57.59 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178 80 LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS 158 (311)
Q Consensus 80 ~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 158 (311)
..++.+..+++.. ..|+. ...+...+-+++|..+|+... .+....+.||. ..+.++.|.+.-++
T Consensus 1036 ~trVm~YI~rLdnyDa~~i------a~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1036 RTRVMEYINRLDNYDAPDI------AEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAER 1100 (1666)
T ss_pred hHHHHHHHHHhccCCchhH------HHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHh
Confidence 3445555555544 33332 222333444555555555432 22233333332 22445555555555
Q ss_pred cCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178 159 LKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS 238 (311)
Q Consensus 159 m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 238 (311)
..+|. .|..+..+-.+.|...+|++-|-+.. |...|.-+|+.+.+.|.+++..+++...++..-.|.. =
T Consensus 1101 ~n~p~--vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d 1169 (1666)
T KOG0985|consen 1101 CNEPA--VWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--D 1169 (1666)
T ss_pred hCChH--HHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--h
Confidence 44443 35555555555555555555443321 3334555555555555555555555554444433322 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-----------------C------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMP-----------------E------RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~-----------------~------~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+.||-+|++.+++.+.++....-. + .++.-|..|...+...|+++.|...-++.
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555555555554444332110 0 24455666777777777777776655544
No 134
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.001 Score=56.26 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHh-cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQA-CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
.+|-.+|+..-+.+ ..+.|..+|.+.+. ...+...|...... +...++.+.|..+|+... +. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~-g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl-k~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE-GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL-KK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-HH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHH
Confidence 35788888888888 89999999999887 33334444443333 333567777999999988 43 3567777888899
Q ss_pred HHHhcCChhHHHHHHHhcCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 142 MYSLCGFPLDSRRVFDSLKTR------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
.+.+.|+.+.|..+|++.... -...|...+.-=.+.|+.+.+..+.+++.+ ..|+......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~---~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE---LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH---HTTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HhhhhhHHHHHHHHh
Confidence 999999999999999987642 335788888888888999999999988876 455655555555544
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0014 Score=47.22 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=41.0
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC--CC----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHH
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT--RN----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIK 208 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~--~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~ 208 (311)
+...+.+.|++++|.+.|+.+.+ |+ ...+..+..++.+.|++++|...|++... . .|+ ...+..+..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-K--YPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-H--CCCCCcccHHHHHHHH
Confidence 44444445555555555544432 11 12344455555555555555555555443 1 121 223444444
Q ss_pred HHhccCChhhHHHHHHHHHHh
Q 037178 209 ACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~m~~~ 229 (311)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555544
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.00058 Score=46.29 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL 145 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~ 145 (311)
..+...+...| ++++|...+++..+ .+.+...+..+...+...++++.|.+.++... +.. +.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLG-DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL-ELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHh-cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC-CcchhHHHHHHHHHHH
Confidence 34444455555 55555555555554 22233344444444445555555555555544 322 2222344444444444
Q ss_pred cCChhHHHHHHHh
Q 037178 146 CGFPLDSRRVFDS 158 (311)
Q Consensus 146 ~g~~~~A~~l~~~ 158 (311)
.|+.++|...++.
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4554444444443
No 137
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.02 Score=49.13 Aligned_cols=83 Identities=8% Similarity=0.014 Sum_probs=34.6
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGF 281 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~ 281 (311)
+.+..|.-+...|+...|.++-.+. + .|+..-|-.-+.+|++.|++++-.++... ++.++-|.-.+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 3333344444444444444432222 1 23444444444444444444444443332 2333444444444444444
Q ss_pred cchHHHHHH
Q 037178 282 SCESFDLLI 290 (311)
Q Consensus 282 ~~~a~~l~~ 290 (311)
..+|..++.
T Consensus 253 ~~eA~~yI~ 261 (319)
T PF04840_consen 253 KKEASKYIP 261 (319)
T ss_pred HHHHHHHHH
Confidence 444444433
No 138
>PLN02789 farnesyltranstransferase
Probab=97.58 E-value=0.018 Score=49.52 Aligned_cols=192 Identities=8% Similarity=-0.024 Sum_probs=136.1
Q ss_pred CHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC-ChhHHHHHHH
Q 037178 79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG-FPLDSRRVFD 157 (311)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~ 157 (311)
++.+|...|+.... ..+..++|..+.+++. +.. +-+..+|+..-.++.+.| ++++++..++
T Consensus 35 ~~~~a~~~~ra~l~----------------~~e~serAL~lt~~aI-~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 35 EFREAMDYFRAVYA----------------SDERSPRALDLTADVI-RLN-PGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHH-HHC-chhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 67777777766544 5677889999999988 543 334456666666677777 6799999998
Q ss_pred hcCC---CChHHHHHHHHHHHhCCCh--hhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178 158 SLKT---RNLFQWNALVSGFTKNELY--TDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL 231 (311)
Q Consensus 158 ~m~~---~~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 231 (311)
++.+ .+..+|+.--..+.+.|+. ++++.+++++.+ ..| |..+|+...-++...|+++++.+.++++.+.+
T Consensus 97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d- 172 (320)
T PLN02789 97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED- 172 (320)
T ss_pred HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-
Confidence 8763 3556787666566666653 678888888876 445 45688888888889999999999999999987
Q ss_pred CCcHHHHHHHHHHHHhc---CCH----HHHHHHHhhCCC---CChhhHHHHHHHHHhCC----CcchHHHHHHhh
Q 037178 232 IGDVFVSNALIAMYGKC---AFV----EEMVKLFEVMPE---RNLVSWNSIICGFSENG----FSCESFDLLIKM 292 (311)
Q Consensus 232 ~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~m~~---~~~~~y~~li~~~~~~g----~~~~a~~l~~~m 292 (311)
+-+..+|+-....+.+. |+. +++.....++.+ .|..+|+-+...+...+ +..+|.+.+.+.
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 44667777776666554 223 456666655553 46788888888877733 345677777776
No 139
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0034 Score=48.68 Aligned_cols=79 Identities=9% Similarity=-0.064 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.|..+...+...|++++|...|++... ....+. ..++..+-..+...|++++|.+.+....+.. +.....+..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344445555555555555555555543 211111 1244455555555555555555555554432 222333444444
Q ss_pred HHH
Q 037178 244 MYG 246 (311)
Q Consensus 244 ~~~ 246 (311)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.029 Score=45.52 Aligned_cols=180 Identities=8% Similarity=-0.034 Sum_probs=91.4
Q ss_pred CHHHHHHHHHhhcc------CCCChh-hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178 79 SLNKALSLLQENLH------NADLKE-ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD 151 (311)
Q Consensus 79 ~~~~a~~~~~~m~~------~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 151 (311)
+.++.++++.++.. ..++.. .|.-++-+....|+.+.|...++++..+. +-+..+--.-.-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 55666666666654 223332 24445555556666666666666665222 2222221111111233466666
Q ss_pred HHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 152 SRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 152 A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
|.+.++.+.+. |.++|--=+...-..|+--+|++-+.+..+ .+.-|...|.-+-..|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666666532 444554444444445555566655555542 2445666666666666666666666666666654
Q ss_pred hCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHhhCCC
Q 037178 229 MGLIGDVFVSNALIAMYGKC---AFVEEMVKLFEVMPE 263 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 263 (311)
.. +.+...+..+.+.+--. .+++-|.+.|.+..+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43 22333333344333222 244555666655554
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00015 Score=49.10 Aligned_cols=20 Identities=0% Similarity=-0.247 Sum_probs=9.3
Q ss_pred HHHHHhccCChhhHHHHHHH
Q 037178 206 VIKACGGIADVGFGSGVHGM 225 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~ 225 (311)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00044 Score=46.81 Aligned_cols=78 Identities=13% Similarity=-0.037 Sum_probs=61.1
Q ss_pred cCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHH
Q 037178 213 IADVGFGSGVHGMAAKMGLI-GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDL 288 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l 288 (311)
.|+++.|..+++.+.+..-. ++...+-.+..+|.+.|++++|..++++ .+ .+....-.+..+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999887532 2555666689999999999999999988 43 3444555668899999999999999
Q ss_pred HHh
Q 037178 289 LIK 291 (311)
Q Consensus 289 ~~~ 291 (311)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 976
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.024 Score=45.99 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=124.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..++.+....| +.+.|...++++.. .+.+...-..-.--+-..|..++|.++++.+. +.+ +-|.++|--=+...
T Consensus 54 l~EqV~IAAld~~-~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTG-RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHH
Confidence 4777888888999 99999999999888 52222221111112335789999999999999 555 66778887777777
Q ss_pred HhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhc---cCCh
Q 037178 144 SLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGG---IADV 216 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~---~g~~ 216 (311)
-..|+--+|.+-+....+ .|...|--+...|...|++++|.-.++++.- +.|... -+..+.+.+.- ..++
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll---~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL---IQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 777888888888777664 4899999999999999999999999999976 556544 44455555433 3367
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~~li 242 (311)
+.+.+.+.+..+..-......|.+.+
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 77888998887765323333333333
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.48 E-value=0.041 Score=52.12 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=30.5
Q ss_pred cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChh
Q 037178 109 HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYT 181 (311)
Q Consensus 109 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~ 181 (311)
+.|+.++|..+++... ..+. -|..|...+-.+|-..|+.++|..+|++..+ |+......+..+|++.+.+.
T Consensus 55 r~gk~~ea~~~Le~~~-~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALY-GLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HhcCchhHHHHHhhhc-cCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433 2221 1444444444445555555555555544432 33333333444444444433
No 145
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.012 Score=56.41 Aligned_cols=209 Identities=11% Similarity=0.075 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
..|..+..+-.+.| .+.+|++-|-+.. |+..|..++..+.+.|.+++-...+...+ +..-+|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~-~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGG-LVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHH
Confidence 35888888888888 8888888775543 67889999999999999999999888877 666566555 4689999
Q ss_pred HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-------------------CCCCCCcchHH
Q 037178 144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSD-------------------TELKPDNFTFP 204 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~p~~~t~~ 204 (311)
++.+++.+-++++. .||+.....+-+-|...|.++.|.-+|.....- ..-.-+..||.
T Consensus 1177 Akt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 99999888776643 344444444555555555555554444333220 00012334555
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGF 281 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~ 281 (311)
-+-.+|...+.+..|. |...++.....-..-+++-|-..|-+++-..+++...- -..-.|+-|.--|++-.
T Consensus 1254 ~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk- 1327 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK- 1327 (1666)
T ss_pred HHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-
Confidence 5555555544443332 22233344455566777777778888877777776542 23345666666666543
Q ss_pred cchHHHHH
Q 037178 282 SCESFDLL 289 (311)
Q Consensus 282 ~~~a~~l~ 289 (311)
.++.++.+
T Consensus 1328 p~km~EHl 1335 (1666)
T KOG0985|consen 1328 PEKMMEHL 1335 (1666)
T ss_pred HHHHHHHH
Confidence 44444433
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.44 E-value=0.026 Score=53.37 Aligned_cols=206 Identities=9% Similarity=0.005 Sum_probs=136.8
Q ss_pred cHHHHHHHHH--hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 65 HFLQEITTLC--EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 65 ~~~~li~~~~--~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
.|...+.++. +.| +.++|..+++.... -..|..|...+-..|.+.++.+++..+|+... +..|+......+..
T Consensus 43 ~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~eell~~lFm 118 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCcHHHHHHHHH
Confidence 4666666654 778 99999999888877 44578899999999999999999999999988 33566777777888
Q ss_pred HHHhcCChhH----HHHHHHhcCCCChHHHHHHHHHHHhCCChh---------hHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178 142 MYSLCGFPLD----SRRVFDSLKTRNLFQWNALVSGFTKNELYT---------DVLSIFVELSSDTELKPDNFTFPCVIK 208 (311)
Q Consensus 142 ~~~~~g~~~~----A~~l~~~m~~~~~~~y~~li~~~~~~g~~~---------~a~~~~~~m~~~~~~~p~~~t~~~li~ 208 (311)
+|.+.+.+.+ |.++++..+++--.-|+.+--.+......+ -|.+.++.+.++.|-.-+..-.-.-..
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 9999887754 677777666554444543322222222222 344556666552331112222223334
Q ss_pred HHhccCChhhHHHHHHH-HHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 037178 209 ACGGIADVGFGSGVHGM-AAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIIC 274 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~ 274 (311)
.+-..|.+++|.+++.. ..+.-...+...-+--++.+.+.+++.+..++-.++.+++..-|-+.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~ 265 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD 265 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH
Confidence 45677889999999944 4444344466677788899999999998888877776532222444444
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0069 Score=51.41 Aligned_cols=183 Identities=8% Similarity=-0.029 Sum_probs=100.1
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH-----HHhcCChhHHHHHHHhcCCC-----ChHHHHHHHHH
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM-----YSLCGFPLDSRRVFDSLKTR-----NLFQWNALVSG 173 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~-----~~~~g~~~~A~~l~~~m~~~-----~~~~y~~li~~ 173 (311)
+--|.+.+++++|..+.+++. ...|-....-.++.+ .....++.-|...|.-..+. ++.--.++.++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 334556677777666655543 122222222222211 11112234455555444321 22234455666
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH-HHHHHHHHhcCCHH
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS-NALIAMYGKCAFVE 252 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~ 252 (311)
+.-..++++++-.+..++. .=..-|..-| .+..+.+..|.+.+|+++|-.+....++ |..+| ..|..+|.++++.+
T Consensus 369 fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 6666677777777766654 3222223222 4667777777777777777666555444 33444 34456777777777
Q ss_pred HHHHHHhhCCCCCh--hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 253 EMVKLFEVMPERNL--VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 253 ~A~~~~~~m~~~~~--~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.|.+++-++..|.. .....+..-|-+.+++--|.+.|+++
T Consensus 446 lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 77777777765432 23344455666777777777777777
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.34 E-value=0.0046 Score=44.45 Aligned_cols=95 Identities=9% Similarity=-0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CcHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI--GDVFVSN 239 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~ 239 (311)
++-.+...+.+.|++++|.+.|+++.. . .|+ ...+..+..++.+.|++++|...++.+....-. .....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK-K--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-H--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 344555566666777777777776654 2 122 234445666666777777777777666654211 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
.+...+.+.|+.++|.+.+++..+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH
Confidence 566666666666666666666553
No 149
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.33 E-value=0.079 Score=45.05 Aligned_cols=188 Identities=10% Similarity=-0.018 Sum_probs=112.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH-HHHHHHHHh
Q 037178 68 QEITTLCEESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN-TRLITMYSL 145 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~-~~ll~~~~~ 145 (311)
-+-..+..+| ++..|+.-|....+..|+. .++-.-...|...|+-..|..-+.... .++||-..- ----..+.+
T Consensus 43 ElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhchhhhh
Confidence 4555666777 8888888888777732322 223333345556666666666666655 235553221 112345667
Q ss_pred cCChhHHHHHHHhcCCCCh------HH------------HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHH
Q 037178 146 CGFPLDSRRVFDSLKTRNL------FQ------------WNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCV 206 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~~~~------~~------------y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~l 206 (311)
.|.+++|..=|+...+.+. .. ....+..+..+|+...|+.....+.+ +.| |...|..-
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~R 195 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQAR 195 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHH
Confidence 7888888887777663211 11 12344555667788888887777765 444 55566666
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..+|...|++..|..=+....+.. .-++.++--+-..+-..|+.+.++...++..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 777777777777766555544443 23445555556666677777777777776664
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.28 E-value=0.0078 Score=55.25 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
..|.++.-.....|++++|...+++... ..|+...|..+...+...|+.++|.+.+.+..+.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4455554444455666666666666554 3355555666666666666666666666555443
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.0014 Score=42.23 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=40.9
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHH
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSI 272 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~l 272 (311)
.+.|++++|.++++.+.+.. +-+..++..+..+|.+.|++++|.++++++.+ |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35677777777777777664 44667777777778888888888888877764 443344433
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.023 Score=51.36 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=116.7
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHH--HHHHH--Hh
Q 037178 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNA--LVSGF--TK 176 (311)
Q Consensus 101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~--li~~~--~~ 176 (311)
-+=++-+...|++++|.+....+. ..+ +-|...+..=+-++.+.+++++|+++.+.-.... +++. +=.+| .+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil-~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKIL-SIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHH-hcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHH
Confidence 334556678899999999999998 554 5566677777788899999999998777644221 2222 23444 47
Q ss_pred CCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHH
Q 037178 177 NELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 254 (311)
.++.++|+..++- ..++. .+.-.=...|.+.|++++|..+|+.+.+.+.+- +...-..++.+ +..-.+
T Consensus 92 lnk~Dealk~~~~------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKG------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQV 161 (652)
T ss_pred cccHHHHHHHHhc------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhH
Confidence 7899999999873 33333 355555677899999999999999998876432 23333333322 112222
Q ss_pred HHHHhhCCCCChhhHHHH---HHHHHhCCCcchHHHHHHhh
Q 037178 255 VKLFEVMPERNLVSWNSI---ICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 255 ~~~~~~m~~~~~~~y~~l---i~~~~~~g~~~~a~~l~~~m 292 (311)
. +.+...+....+|..+ ...+...|++.+|+++++..
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 3444444333344433 45677899999999999887
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0074 Score=51.23 Aligned_cols=194 Identities=13% Similarity=0.144 Sum_probs=121.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHh-----cccCCChhHHHHHHHHHHhhcCCCchh-hHHHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQA-----CGHEKDIEIGKRVHELVSASTQFSNDF-IINTRLIT 141 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~~~~ll~ 141 (311)
.|+.-|.+.+ ++.+|..+.+......|-......+..+ ......+..|.+.|...- ..+.+-|. .--.++.+
T Consensus 290 NL~iYyL~q~-dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQN-DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccc-cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHH
Confidence 4566688899 9999999998877655554444443333 233334566777776665 55554443 23344555
Q ss_pred HHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH-HHHHHhccCCh
Q 037178 142 MYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC-VIKACGGIADV 216 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~-li~~~~~~g~~ 216 (311)
++.-..++++.+-.++.++ ..|..-|| +..+++..|.+.+|.++|-++.. ..+ -|..+|.. +.++|.+.|..
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCc
Confidence 6666677777777776665 23444444 67788888899999998877754 222 35556654 45667888888
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHhhCCC--CChhhH
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSN-ALIAMYGKCAFVEEMVKLFEVMPE--RNLVSW 269 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y 269 (311)
+.|+.++ .+.+-+.+....- .+.+-|-+++.+--|-+.|++++. |++.-|
T Consensus 445 ~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 445 QLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred hHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 8887765 3444333443333 334567788888888888887763 444434
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.0071 Score=43.83 Aligned_cols=108 Identities=6% Similarity=-0.061 Sum_probs=73.5
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CcHHHHHHHHHHH
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI--GDVFVSNALIAMY 245 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~ 245 (311)
+..++-..|+.++|+.+|++... .|.... ...+-.+-+.+...|++++|..+++......-. .+......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556677888888888888887 776654 235666777888888888888888887765211 1222333334466
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 037178 246 GKCAFVEEMVKLFEVMPERNLVSWNSIICGFSE 278 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~ 278 (311)
...|+.++|.+.+-....++...|..-|..|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888877666666667666666653
No 155
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.26 E-value=0.076 Score=45.15 Aligned_cols=227 Identities=12% Similarity=0.047 Sum_probs=160.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
.+..+.-.| +...|++...++.+ .+-|...|..-..+|...|.+..|..-++... +..-..+...| -+-..+...|
T Consensus 161 ql~s~~~~G-D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs~DnTe~~y-kis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSG-DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLSQDNTEGHY-KISQLLYTVG 237 (504)
T ss_pred HHHHHhcCC-chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccchHHHH-HHHHHHHhhh
Confidence 344555678 99999999999999 77889999999999999999999998888877 55533333444 4777888999
Q ss_pred ChhHHHHHHHhcCC--CChH----HHHHH---------HHHHHhCCChhhHHHHHHHhhhcCCCCCCcc---hHHHHHHH
Q 037178 148 FPLDSRRVFDSLKT--RNLF----QWNAL---------VSGFTKNELYTDVLSIFVELSSDTELKPDNF---TFPCVIKA 209 (311)
Q Consensus 148 ~~~~A~~l~~~m~~--~~~~----~y~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---t~~~li~~ 209 (311)
+.+.++...++..+ ||-. .|-.+ +....+.++|.++++-.+...+ ..-.-..+ .+..+-.+
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk-~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK-NEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCcccceeeeeeheeeec
Confidence 99999999888764 3331 12111 3344567889999998888766 32221223 34556677
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---h------------------h
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---V------------------S 268 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~------------------~ 268 (311)
+...|.+.+|.+.-.+..+.. +.|+.++.--.++|.-..++++|..-|+...+.|. . -
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRD 395 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccch
Confidence 788899999999998887764 44588888888999999999999999988775221 1 1
Q ss_pred HHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCce
Q 037178 269 WNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVI 304 (311)
Q Consensus 269 y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~ 304 (311)
|-. |-+--++..-.+..+.|++| ...+.||..
T Consensus 396 YYK-ILGVkRnAsKqEI~KAYRKl---AqkWHPDNF 427 (504)
T KOG0624|consen 396 YYK-ILGVKRNASKQEITKAYRKL---AQKWHPDNF 427 (504)
T ss_pred HHH-HhhhcccccHHHHHHHHHHH---HHhcCCccc
Confidence 211 22333444556677788888 456777753
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.042 Score=47.19 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
.+..|.-+...|+...|.++-.+.+=||-.-|-..+.+++..|+|++-.++... + -+..-|-.++.+|.+.|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCCChHHHHHHHHHCCC
Confidence 334455556667777777777777767777777777777777777666554321 1 133666777777777777
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..+|..+... ..+..-+..|.++|++.+|.+.--+..
T Consensus 253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7777766654 122456667777777777766554443
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.081 Score=43.68 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhH---HHHHHhcccCCChhHHHHHHHHHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLHNADL-KEAT---GVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~---~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
....+.+.| ++++|.+.|+++....|+ .... -.+..++.+.++.+.|...+++..
T Consensus 38 ~A~~~~~~g-~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 38 TAQQKLQDG-NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445666 777777777777662222 2222 234455566777777777777666
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.23 E-value=0.0044 Score=54.29 Aligned_cols=88 Identities=8% Similarity=-0.100 Sum_probs=74.9
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
...+...| ++++|++.|++..+ .+.+...|..+..++...|++++|...++.+. +.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~-~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDD-DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCCHHHHHHHHHHHHHhCC
Confidence 44566778 99999999999999 66667788888889999999999999999998 554 3456778888999999999
Q ss_pred hhHHHHHHHhcC
Q 037178 149 PLDSRRVFDSLK 160 (311)
Q Consensus 149 ~~~A~~l~~~m~ 160 (311)
+++|...|++..
T Consensus 86 ~~eA~~~~~~al 97 (356)
T PLN03088 86 YQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 159
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.22 E-value=0.081 Score=49.45 Aligned_cols=226 Identities=14% Similarity=0.034 Sum_probs=156.1
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc------
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN------ 131 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~------ 131 (311)
.|++.-|-++ -|+..+ +++.|.+..++..+ ..-+...|..+...+...+++.+|..+.+...++.|...
T Consensus 477 dp~~if~lal--q~A~~R-~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQR-QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CchHHHHHHH--HHHHHH-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 4544444333 455667 89999999998888 455678899999999999999999999988775555311
Q ss_pred ------------hhhHHHHHHHHHHhc------CChhHHHHHHHhcC---------------------------------
Q 037178 132 ------------DFIINTRLITMYSLC------GFPLDSRRVFDSLK--------------------------------- 160 (311)
Q Consensus 132 ------------~~~~~~~ll~~~~~~------g~~~~A~~l~~~m~--------------------------------- 160 (311)
-..|+..++..+-.. |+-...+++...+.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 122333333333210 11111111111111
Q ss_pred -------CCC------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178 161 -------TRN------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 161 -------~~~------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
.|+ ...|......+.+.+..++|...+.+... +.| ....|...-..+...|..++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 011 12366777888888999999888877754 444 3445655556677788899999988877
Q ss_pred HHhCCCCcHHHHHHHHHHHHhcCCHHHHHH--HHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVK--LFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..-. +.++...+++..++.+.|+..-|.. ++.++.+ .|...|-.+-..+-+.|+.+.|.+.|.-.
T Consensus 711 l~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 711 LALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 7664 4468889999999999998877777 8888886 35679999999999999999999999876
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.22 E-value=0.0059 Score=47.52 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=79.0
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
....|..+...+...| ++++|...|++.....|+ ...+..+...+.+.|++++|...+++.. +.. +-+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-ELN-PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cccHHHHH
Confidence 3445677777777888 888888888887762222 3567777777888888888888888877 432 23455566
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
.+...|...|+...+..-++... ..+++|.+.+++... ..|+. |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~---~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIR---LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHh---hCchh--HHHHHHHHHhcCc
Confidence 66667777666544443222210 124566666666544 23333 5555555555443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.16 E-value=0.0076 Score=52.80 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=75.9
Q ss_pred HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChh
Q 037178 105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYT 181 (311)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~ 181 (311)
..+...|+++.|.+.|+++. +.. +-+...|..+..+|.+.|++++|...+++..+ .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al-~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAI-DLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34456788999999999888 544 44566777788888899999999998888753 36677888888889999999
Q ss_pred hHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178 182 DVLSIFVELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~ 209 (311)
+|...|++... +.|+.......+..
T Consensus 88 eA~~~~~~al~---l~P~~~~~~~~l~~ 112 (356)
T PLN03088 88 TAKAALEKGAS---LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 99999988866 55665555544433
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.15 E-value=0.034 Score=50.87 Aligned_cols=211 Identities=11% Similarity=0.037 Sum_probs=114.2
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFD 157 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 157 (311)
+-++|.+..+...+ ...+.+.|+.+.-.+-...++++|...|..+. +.+ +-|...+--|--.-.+.|+++.....-.
T Consensus 56 ~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 56 KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-KIE-KDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555555555554 33444555555555555555666666665555 433 3334444333333344455544444433
Q ss_pred hcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH------HHhccCChhhHHHHHHHHHH
Q 037178 158 SLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK------ACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 158 ~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~------~~~~~g~~~~a~~~~~~m~~ 228 (311)
+..+ .....|....-++.-.|+...|..+.++..+...-.|+...|..... ...+.|.+++|.+.+..-..
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 3332 23455777777777888888888888887762333466555543332 33566666676666654332
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHhCCCcchHH-HHHHhh
Q 037178 229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNS-IICGFSENGFSCESF-DLLIKM 292 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~-li~~~~~~g~~~~a~-~l~~~m 292 (311)
. +.-....-..-.+.+.+.|++++|..++..+.+ ||-.-|+. +..++.+-.+.-++. .+|...
T Consensus 214 ~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 214 Q-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred H-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2 222233334555677788888888888888876 44444444 444444233333333 455544
No 163
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.15 E-value=0.026 Score=50.55 Aligned_cols=178 Identities=10% Similarity=0.018 Sum_probs=123.7
Q ss_pred HHHHHHHHHhhcc--CCCChhhHHHHHHhcccCC---ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHH
Q 037178 80 LNKALSLLQENLH--NADLKEATGVLLQACGHEK---DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRR 154 (311)
Q Consensus 80 ~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 154 (311)
-+++.++++.... ..-+..+|..+...--..- ..+....+++.+.......|+. +|..+|+.--+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH
Confidence 4456666666555 3334444444333211111 2556666777766334445554 55568888888888999999
Q ss_pred HHHhcCC-----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 155 VFDSLKT-----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 155 l~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
+|.+..+ .++..++++|.-||. ++..-|.++|+--.... +|.- --...++-+...++-..++.+|++...
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 9998874 277888999998876 57789999998744313 3333 334667778888999999999999998
Q ss_pred hCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 229 MGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 229 ~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.++.+| ..+|..+|+--..-|++..+.++-+++.
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 877765 5899999999999999998888877654
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.13 E-value=0.011 Score=44.70 Aligned_cols=83 Identities=8% Similarity=0.020 Sum_probs=40.5
Q ss_pred HHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChh
Q 037178 142 MYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~ 217 (311)
.+...|++++|.++|+... .| +..-|-.|..++-..|++++|++.|..... +.| |...+-.+-.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHcCCHH
Confidence 3344555555555555443 22 334444555555555555555555555443 223 2344445555555555555
Q ss_pred hHHHHHHHHH
Q 037178 218 FGSGVHGMAA 227 (311)
Q Consensus 218 ~a~~~~~~m~ 227 (311)
.|.+.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.022 Score=48.23 Aligned_cols=124 Identities=9% Similarity=0.002 Sum_probs=59.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHh---hcCCCch--
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH--NADL-----KEATGVLLQACGHEKDIEIGKRVHELVSA---STQFSND-- 132 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~~~-- 132 (311)
.|+..-..|-..+ ++++|.+.|.+.-. .+.+ ...|......+ +.+++++|...+++..+ +.| .++
T Consensus 37 ~y~~Aa~~fk~~~-~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 37 LYEKAANCFKLAK-DWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 4777777777778 88888888887755 1111 12233333333 23366666666555441 112 111
Q ss_pred hhHHHHHHHHHHhc-CChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 133 FIINTRLITMYSLC-GFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 133 ~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
...+..+-..|-+. |++++|.+.|++..+ . -...+..+...+.+.|++++|.++|++..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22344444445444 555555555544321 1 11234445555555555555555555544
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0099 Score=46.06 Aligned_cols=78 Identities=5% Similarity=-0.148 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
..|..+...+...| ++++|+..|++.....++ ..++..+...+...|+.++|...++... ... +.....++.+
T Consensus 36 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~~-~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEG-EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCcHHHHHHH
Confidence 45666666777777 888888888877652222 2356666677777777777777777776 332 2223344445
Q ss_pred HHHHH
Q 037178 140 ITMYS 144 (311)
Q Consensus 140 l~~~~ 144 (311)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 167
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.10 E-value=0.037 Score=51.57 Aligned_cols=199 Identities=7% Similarity=-0.076 Sum_probs=129.9
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.|...|..+--+..+.| +++.+.+.|++... .-.....|..+-..+...|.-..|..+++.-.....-++|...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46777888888888888 88888888888777 55667778888888888888888888887755122222344444333
Q ss_pred HHHHHhc-CChhHHHHHHHhcC--------CCChHHHHHHHHHHHhC-----------CChhhHHHHHHHhhhcCCCCCC
Q 037178 140 ITMYSLC-GFPLDSRRVFDSLK--------TRNLFQWNALVSGFTKN-----------ELYTDVLSIFVELSSDTELKPD 199 (311)
Q Consensus 140 l~~~~~~-g~~~~A~~l~~~m~--------~~~~~~y~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~ 199 (311)
-..|.+. |.++++...-.+.. .-....|-.+.-+|... ....++++.+++..+..+-.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 3334333 55555443332221 11334444444444322 2345677777777653555566
Q ss_pred cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+..|.++-. +..++++.|.....+..+.+-.-+...|.-|.-.+...+++.+|+.+.+...
T Consensus 480 ~if~lalq~--A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 480 VIFYLALQY--AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHH--HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 665655544 4455788888888888887656788888888888888888988888887655
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.033 Score=52.51 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY 245 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 245 (311)
.|.=+....-..|+.+.|+.+|...+. |-++++..|-.|+.++|.++-++ .-|....--|.+.|
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHh
Confidence 333344444445666666666665554 55666667777777777766544 23666777788888
Q ss_pred HhcCCHHHHHHHHhhCC
Q 037178 246 GKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~ 262 (311)
-..|++.+|...|.+..
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88899998888887665
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.013 Score=55.02 Aligned_cols=51 Identities=4% Similarity=0.107 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++...|-.|+.++|-++-++- .|..+.-.|.+-|-+.|++.+|..+|.+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444444455555555555432 34455556777888888888888887765
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.07 E-value=0.016 Score=52.99 Aligned_cols=222 Identities=11% Similarity=0.087 Sum_probs=128.0
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHh---------hccCCCChhhHHHHHHhcccCCChhH--HHHHHHHHHhhcC
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQE---------NLHNADLKEATGVLLQACGHEKDIEI--GKRVHELVSASTQ 128 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~---------m~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~m~~~~g 128 (311)
.+..+.+.+-+..|.++| .+++|..+--- +-....+.-.+++.=++|.+..+..- ...-+++++ +.|
T Consensus 553 ~~~evp~~~~m~q~Ieag-~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k-~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERG-LFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERK-KRG 630 (1081)
T ss_pred ecccccccccchhhhhcc-chhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH-hcC
Confidence 344455666667777788 77777654211 10012233445555566666555443 233345666 667
Q ss_pred CCchhhHHHHH----------HHHHHhcCChhHHHHHHHhcCC----------CCh----------HHH-------HHHH
Q 037178 129 FSNDFIINTRL----------ITMYSLCGFPLDSRRVFDSLKT----------RNL----------FQW-------NALV 171 (311)
Q Consensus 129 ~~~~~~~~~~l----------l~~~~~~g~~~~A~~l~~~m~~----------~~~----------~~y-------~~li 171 (311)
-.|+....... .+.+.++|.-..|+++|.+|+- .+. ..| .+..
T Consensus 631 e~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA 710 (1081)
T KOG1538|consen 631 ETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA 710 (1081)
T ss_pred CCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence 66765542211 1223344444444444444320 000 011 2334
Q ss_pred HHHHhCCChhhHHHHHH-----HhhhcCCCC---CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 172 SGFTKNELYTDVLSIFV-----ELSSDTELK---PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 172 ~~~~~~g~~~~a~~~~~-----~m~~~~~~~---p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
..+..+|+.++|..+.. +|.-+-+-+ .+..+...+..-+.+...+..|-++|..|-+. ..+++
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVq 781 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQ 781 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhh
Confidence 45555666666665531 111001112 23445555666666777788888888877554 37888
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCh-----------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 244 MYGKCAFVEEMVKLFEVMPE--RNL-----------VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~--~~~-----------~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.....|++++|+.+-+...+ +|+ .-|.-.=.+|.++|+-.+|..+++++
T Consensus 782 lHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred heeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 89999999999999999886 443 23455667899999999999999988
No 171
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.04 E-value=0.086 Score=48.35 Aligned_cols=238 Identities=9% Similarity=-0.015 Sum_probs=142.8
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178 58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN 136 (311)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 136 (311)
....+.++|..+--.+-... ++++|+..|..... .+.|...|.-+--.-++.|+++.......+.. +.. +.....|
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL-ql~-~~~ra~w 146 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDK-KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL-QLR-PSQRASW 146 (700)
T ss_pred cCcccchhHHHHHHHHhhhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH-Hhh-hhhHHHH
Confidence 44567788888777776666 88999999988888 55556667666555567788887777777766 332 3344567
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC-----CChHHHHHHHH------HHHhCCChhhHHHHHHHhhhcCCCCCCcchHH-
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQWNALVS------GFTKNELYTDVLSIFVELSSDTELKPDNFTFP- 204 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~y~~li~------~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~- 204 (311)
..+.-++--.|+...|..+.+...+ ++...|.-... ...++|..++|.+.+..-+. ...|...|.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e 223 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhh
Confidence 7777777778888888888877652 45555554433 33456777777777665543 223444443
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHH-HHHHHHHHHhcCCHHHHH-HHHhhCCC--CChhhHHHHHHHHHh-C
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFV-SNALIAMYGKCAFVEEMV-KLFEVMPE--RNLVSWNSIICGFSE-N 279 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~-~~~~~m~~--~~~~~y~~li~~~~~-~ 279 (311)
+-..-+.+.|++++|..++..+...+ ||..- |-.+..++++--+.-++. .+|....+ |-...-..+-..... .
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e 301 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE 301 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence 44556678888999999988888774 44444 444445554333333333 55555544 111111111111112 2
Q ss_pred CCcchHHHHHHhhhhccCCCCCCcee
Q 037178 280 GFSCESFDLLIKMMGCEEGFIPDVIT 305 (311)
Q Consensus 280 g~~~~a~~l~~~m~~~~~g~~P~~~t 305 (311)
.-.+..-+++..+ .+.|+.+-...
T Consensus 302 el~~~vdkyL~~~--l~Kg~p~vf~d 325 (700)
T KOG1156|consen 302 ELKEIVDKYLRPL--LSKGVPSVFKD 325 (700)
T ss_pred hhHHHHHHHHHHH--hhcCCCchhhh
Confidence 2233445556666 67777654333
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.04 E-value=0.0071 Score=45.65 Aligned_cols=83 Identities=13% Similarity=-0.026 Sum_probs=37.7
Q ss_pred HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178 73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD 151 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 151 (311)
+.+.| ++++|..+|+.... .+-+..-|-.+.-+|-..|++++|...|.... ... +-|...+-.+-.++.+.|+.+.
T Consensus 45 ly~~G-~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVK-EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCchHHHHHHHHHHHcCCHHH
Confidence 33444 55555555555444 22223333344444444455555555555544 333 2333333334455555555555
Q ss_pred HHHHHHh
Q 037178 152 SRRVFDS 158 (311)
Q Consensus 152 A~~l~~~ 158 (311)
|++.|+.
T Consensus 122 A~~aF~~ 128 (157)
T PRK15363 122 AIKALKA 128 (157)
T ss_pred HHHHHHH
Confidence 5554443
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.03 E-value=0.014 Score=55.83 Aligned_cols=160 Identities=12% Similarity=0.040 Sum_probs=107.9
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..|-..|.... +...|...|++..+ ...|..........+++..+++.|..+.-..-++.....-..-|--+--.|
T Consensus 494 af~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4666666666666 77778888888777 666677788888888888888888877333321111001111122233446
Q ss_pred HhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH--HHHhccCChhh
Q 037178 144 SLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI--KACGGIADVGF 218 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li--~~~~~~g~~~~ 218 (311)
.+.++..+|..-|....+ .|...|..+..+|.++|++..|.++|.+... +.|+.. |...- -.-|..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s~-y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLSK-YGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHhH-HHHHHHHHHHHHhhhHHH
Confidence 677888888888876543 3777889999999999999999999988855 667543 22222 22477889999
Q ss_pred HHHHHHHHHHh
Q 037178 219 GSGVHGMAAKM 229 (311)
Q Consensus 219 a~~~~~~m~~~ 229 (311)
+...++.....
T Consensus 649 ald~l~~ii~~ 659 (1238)
T KOG1127|consen 649 ALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHH
Confidence 98888877654
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.089 Score=43.87 Aligned_cols=153 Identities=8% Similarity=-0.016 Sum_probs=97.7
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-----------------Ch-----
Q 037178 107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR-----------------NL----- 164 (311)
Q Consensus 107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----------------~~----- 164 (311)
..+.|+.+.|.+-|....+-.|+.| ...||.-+.- .+.|+.+.|++...++.++ |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 3467888888888888875556554 4567744443 4557888888877765421 21
Q ss_pred ----------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc
Q 037178 165 ----------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD 234 (311)
Q Consensus 165 ----------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 234 (311)
..+|.-...+.+.|+++.|.+-+.+|.-+..-..|.+|...+.-.- -.+++.+..+-+.-+...+ +-.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCC
Confidence 1233334445677888888888888864344556777665443221 2344555555555555554 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 235 VFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..|+..++-.|||+.-++-|-+++.+-..
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 67888888889999888888888876554
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.029 Score=45.85 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
..|+.-+.++++-. .+++|..-++....
T Consensus 70 q~wT~r~~~l~kLR-~~~~a~~EL~~f~~ 97 (366)
T KOG2796|consen 70 QLWTVRLALLVKLR-LFQNAEMELEPFGN 97 (366)
T ss_pred HHHHHHHHHHHHHh-hhHHHHhhhhhhcc
Confidence 34677777778777 77877766655554
No 176
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.043 Score=49.06 Aligned_cols=213 Identities=10% Similarity=-0.113 Sum_probs=136.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH-------HH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN-------TR 138 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~-------~~ 138 (311)
+..+.++.-+.. +++.|+.-+....++.-+..-++..-.++...|...+....-+... +.|.+ ...-| ..
T Consensus 227 ek~lgnaaykkk-~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKK-DFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAV-EVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhHH-HHHHHHHHHHHHHH
Confidence 456677777777 8999999998888844555556666677888888877777766666 44421 11122 22
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIAD 215 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~ 215 (311)
+-++|.+.++++.|...|.+... ++.. ...+....+++....+...- +.|... -...--..+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence 34466777888888888877432 1211 11233344555554444432 444431 12233556778889
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+..|.+.|.++++.. +-|...|....-+|.+.|.+..|++-.+...+.|. ..|..=..++.-..++++|++.|.+-
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887 66888999999999999999888887777665433 23333333334445777777777766
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.14 Score=39.79 Aligned_cols=132 Identities=7% Similarity=-0.054 Sum_probs=87.4
Q ss_pred CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCCcch
Q 037178 128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL-KPDNFT 202 (311)
Q Consensus 128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~t 202 (311)
...|++..--.|-.+..+.|+..+|...|++-.. .|....-.+..+....+++..|...++++.+ .+- .-+..+
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e-~~pa~r~pd~ 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME-YNPAFRSPDG 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh-cCCccCCCCc
Confidence 3456655555677777788888888888777542 4666677777777777888888888888766 331 112345
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
...+.+.+...|+..+|+.-|+...+. .|+...---.-..+.+.|+.++|..-+.++.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 566677778888888888888777665 4555444445556677777776655444443
No 178
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.86 E-value=0.017 Score=42.26 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
..++.++|-++++.|+++....+++..=.-|+ .+-...+. ........|+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~----------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD----------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc----------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 45566666677777776666666655321110 00000000 11124566777777777777777
Q ss_pred cCChhhHHHHHHHHHHh-CCCCcHHHHHHHHHHHH
Q 037178 213 IADVGFGSGVHGMAAKM-GLIGDVFVSNALIAMYG 246 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~ 246 (311)
.|++..|.++++...+. +++.+..+|..|++-..
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777776543 56666777777776443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.82 E-value=0.036 Score=51.01 Aligned_cols=140 Identities=4% Similarity=-0.142 Sum_probs=91.6
Q ss_pred CCCchhhHHHHHHHHHHhc-----CChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCC--------ChhhHHHHHHHhh
Q 037178 128 QFSNDFIINTRLITMYSLC-----GFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNE--------LYTDVLSIFVELS 191 (311)
Q Consensus 128 g~~~~~~~~~~ll~~~~~~-----g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g--------~~~~a~~~~~~m~ 191 (311)
+.+.+...|...+.+.... +..+.|..+|++..+ | +...|..+..++.... +...+.+..++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3366777777777775443 236678888887653 4 3344544433332221 2233344444432
Q ss_pred hcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhH
Q 037178 192 SDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSW 269 (311)
Q Consensus 192 ~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y 269 (311)
.......+...|.++.-.....|++++|...+++..+.+ |+...|..+...|...|+.++|.+.+++... |...+|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 201122344667777666667899999999999998886 5788999999999999999999999998774 444444
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.79 E-value=0.081 Score=44.80 Aligned_cols=126 Identities=9% Similarity=-0.049 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhC-CChhhHHHHHHHhhhc---CCCCCC--cchHHHHHHHHhccCChhhHHHHHHHHHHhCCC-----Cc
Q 037178 166 QWNALVSGFTKN-ELYTDVLSIFVELSSD---TELKPD--NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI-----GD 234 (311)
Q Consensus 166 ~y~~li~~~~~~-g~~~~a~~~~~~m~~~---~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~ 234 (311)
.+..+...|-.. |++++|.+.|++..+- .+ .+. ..++..+...+.+.|++++|.++|++....... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 455667777777 8999999988876431 22 121 245677778889999999999999998765432 22
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhC--CCcchHHHHHHhh
Q 037178 235 VF-VSNALIAMYGKCAFVEEMVKLFEVMPERNL--------VSWNSIICGFSEN--GFSCESFDLLIKM 292 (311)
Q Consensus 235 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~y~~li~~~~~~--g~~~~a~~l~~~m 292 (311)
.. .|-..+-++...|+...|.+.|++..+.++ ..-..||.+|-.. ..+++|..-|+.+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 22 233344466778999999999998775321 2344556665432 2344455555444
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.047 Score=50.53 Aligned_cols=165 Identities=9% Similarity=0.019 Sum_probs=86.1
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH--------HHHHHHHhcCChhHHHHHHHhcCCCCh
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT--------RLITMYSLCGFPLDSRRVFDSLKTRNL 164 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~--------~ll~~~~~~g~~~~A~~l~~~m~~~~~ 164 (311)
..|.+..|..+.......-+++.|+..|-+...-.|++.-...-+ +=+.+| -|++++|+++|-+|.++|.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh
Confidence 457777888777776666667777776665542233322211111 112222 3888999999888887765
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH-------------HHHH----
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH-------------GMAA---- 227 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~-------------~~m~---- 227 (311)
. |..+.+.|+|-.+.++++.-..+..-.--...|+.+-..+.....+++|.+.+ -++.
T Consensus 766 A-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 766 A-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred h-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 3 34445555555555554331110000001123333333333333333333222 1111
Q ss_pred ----HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178 228 ----KMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER 264 (311)
Q Consensus 228 ----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (311)
...++-+....-.+.+++.+.|.-++|.+.|-+-..|
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 1123556667777778888888888887777666544
No 182
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.77 E-value=0.02 Score=41.96 Aligned_cols=101 Identities=12% Similarity=-0.026 Sum_probs=77.0
Q ss_pred ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh--cCCCChHHHHHHHHH
Q 037178 96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS--LKTRNLFQWNALVSG 173 (311)
Q Consensus 96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~--m~~~~~~~y~~li~~ 173 (311)
|..++..+|.++++.|+++....+.+..- |+..+...-. +. +.. -..|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~~---------~~-------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKKE---------GD-------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcccc---------Cc-------cCCCCCCCCCHHHHHHHHHH
Confidence 56789999999999999999999887644 5544432100 00 111 124788999999999
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
|+.+|++..|+++.+...+..++.-+..+|..|++-+...-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999987768888888999999987755444
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.77 E-value=0.0034 Score=40.35 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
.|++++|.++++.+. ... +-+..++-.+..+|.+.|++++|..+++++.
T Consensus 4 ~~~~~~A~~~~~~~l-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKAL-QRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHH-HHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555 322 2234444445555555555555555555554
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.77 E-value=0.045 Score=52.61 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=50.3
Q ss_pred hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh-----HHHHHHHHH
Q 037178 99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL-----FQWNALVSG 173 (311)
Q Consensus 99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-----~~y~~li~~ 173 (311)
.|..+...|+..-+..+|...|+... +.+ .-|........+.|++..+++.|..+.-.-.+.+. ..|--.--.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAF-eLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAF-ELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34444444444444444444444444 222 22333444444445555555554444222211110 111112222
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
|.+.++..+|+.-|+...+ +.| |...|..+.++|...|++..|.++|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred ccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 3344444444444444432 233 2334445555555555555555555443
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.69 E-value=0.15 Score=40.88 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCC---ChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NAD---LKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
...+.+.| ++.+|...|+.+.. .+. -....-.+..++-+.|+.+.|...++...
T Consensus 12 a~~~~~~g-~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 12 ALEALQQG-DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445666 67777777777665 111 12334455556666677777776666665
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.2 Score=38.90 Aligned_cols=127 Identities=12% Similarity=-0.051 Sum_probs=71.6
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CChHHH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQW 167 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~y 167 (311)
..|++..-..+..+..+.|+..+|...|.+.. ..-+..|....-.+-++....++...|...++++-+ +...+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45555555566666666777777777777665 444555666666666666666777776666666542 122233
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 037178 168 NALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 223 (311)
-.+...+...|++..|..-|+.... .-|+...-...-..+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455566666666666666666655 3344332222233344555555544433
No 187
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.66 E-value=0.097 Score=47.15 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=111.4
Q ss_pred HHHHhcCCCHHHHHHHHH--hhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 71 TTLCEESKSLNKALSLLQ--ENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~--~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
....-++ +++++.++.+ ++.. .....-...+++-+-+.|..+.|.++-.+-. .-.+...+.|+
T Consensus 269 k~av~~~-d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRG-DFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT--HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-
T ss_pred HHHHHcC-Chhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCC
Confidence 3445667 8998887776 2232 1124557888888889998888887755432 23556688999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 149 PLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 149 ~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
++.|.++.++.. +...|..|.+...+.|+++-|.+.|++... |..|+--|.-.|+.+...++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999887776 666899999999999999999999999877 77888888889999888888888777
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.| -+|....++.-.|+++++.+++.+-.
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 77 24666666677788888888877644
No 188
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.63 E-value=0.18 Score=37.58 Aligned_cols=125 Identities=11% Similarity=0.057 Sum_probs=65.8
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCCh
Q 037178 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY 180 (311)
Q Consensus 101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~ 180 (311)
..++..+...+.......+++.+. ..+ ..+...+|.++..|++.+. ++..+.++. ..+......++..|.+.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 445555555666777777777776 555 3566677777777776532 333333331 22333334456666666666
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGI-ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG 246 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 246 (311)
+++..++.++.. |...++.+... ++++.|.++... ..+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666655543 22233333222 555555555543 124445555555443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.57 E-value=0.01 Score=38.20 Aligned_cols=58 Identities=16% Similarity=-0.025 Sum_probs=28.0
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHhh
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA-FVEEMVKLFEV 260 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 260 (311)
+|..+-..+...|++++|...|.+..+.. +.+..+|..+..+|.+.| ++++|.+.+++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444444445555555555555554443 334445555555555555 45555554443
No 190
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.47 E-value=0.026 Score=46.60 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=77.1
Q ss_pred CChhhHHHHHHhcc-----cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHH
Q 037178 95 DLKEATGVLLQACG-----HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNA 169 (311)
Q Consensus 95 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~ 169 (311)
.|-..|...+..+. +.+.++-....++.|. +.|+..|..+|+.|++.+-|....-. |.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~----------------nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQ----------------NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccH----------------HH
Confidence 34445555444443 4567788888899999 99999999999999988876433211 11
Q ss_pred HHHHHHhC-CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh-hhHHHHHHHH
Q 037178 170 LVSGFTKN-ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV-GFGSGVHGMA 226 (311)
Q Consensus 170 li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m 226 (311)
+=..|..- .+-+-+++++++|.. .|+.||..+=..+++++++.+-. .+..++.-.|
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 11111111 234668899999999 99999999999999999887743 2333333333
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.47 E-value=0.012 Score=37.38 Aligned_cols=10 Identities=10% Similarity=-0.041 Sum_probs=3.2
Q ss_pred HhcCCHHHHH
Q 037178 246 GKCAFVEEMV 255 (311)
Q Consensus 246 ~~~g~~~~A~ 255 (311)
...|++++|.
T Consensus 42 ~~~g~~~~A~ 51 (65)
T PF13432_consen 42 YQQGRYDEAL 51 (65)
T ss_dssp HHTT-HHHHH
T ss_pred HHcCCHHHHH
Confidence 3333333333
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.45 E-value=0.062 Score=44.86 Aligned_cols=96 Identities=7% Similarity=-0.073 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHhCC--CCcHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKMGL--IGDVFVS 238 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~ 238 (311)
..|+..+..+.+.|++++|...|+.+.. ..|+. ..+-.+...+...|++++|...|..+.+.-- +.....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~---~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK---KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3455555555666777777777777765 33443 2555666677777777777777777765421 1123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
-.+...|.+.|+.++|.++|++..+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445566667777777777766543
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.43 E-value=0.028 Score=46.75 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=66.1
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhH
Q 037178 107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDV 183 (311)
Q Consensus 107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a 183 (311)
..+.+++++|...|.+.+ +.. +-|.+-|..--.+|++.|.++.|.+=.+.-.. .-..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI-~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI-ELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHH-hcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345677777777777776 443 44566666677777777777777766665443 2345677777777777777777
Q ss_pred HHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 184 LSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 184 ~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
.+.|++..+ +.|+-.+|-.=++..
T Consensus 169 ~~aykKaLe---ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE---LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc---cCCCcHHHHHHHHHH
Confidence 777777655 677777776666554
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.41 E-value=0.011 Score=37.48 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
..+.+.| ++++|.+.|++..+ .+-+...+..+..++...|++++|...|+.+.
T Consensus 5 ~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666 66666666666666 43345556666666666666666666666665
No 195
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.39 E-value=0.03 Score=46.19 Aligned_cols=110 Identities=13% Similarity=0.196 Sum_probs=78.3
Q ss_pred HHHHHHhcC--CCChHHHHHHHHHHHhC-----CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC----------
Q 037178 152 SRRVFDSLK--TRNLFQWNALVSGFTKN-----ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA---------- 214 (311)
Q Consensus 152 A~~l~~~m~--~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g---------- 214 (311)
.++.|.... ++|-.+|-+.+..|... +.++-....++.|++ .|+.-|..+|+.|++.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345555555 56667777777766543 455555666778888 888888888888888775443
Q ss_pred ------ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 037178 215 ------DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV-EEMVKLFEVMP 262 (311)
Q Consensus 215 ------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 262 (311)
+-+-+.+++++|...|+.||..+-..|++++++.|-. .+..++.--|.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345789999999999999999999999999987753 23333333343
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.38 E-value=0.036 Score=46.11 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=69.5
Q ss_pred HHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhH
Q 037178 73 LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLD 151 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 151 (311)
+.+.+ ++++|+..|.+... .+-|...|.--..+|++.|..+.|.+-.+... ..+ +.-..+|..|-.+|...|++++
T Consensus 91 ~m~~~-~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNK-DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhh-hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 44567 88888888888888 55666777777888888888888888877776 443 3346688888888888888888
Q ss_pred HHHHHHhcC--CCChHHH
Q 037178 152 SRRVFDSLK--TRNLFQW 167 (311)
Q Consensus 152 A~~l~~~m~--~~~~~~y 167 (311)
|.+.|++.. +|+-.+|
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 888888765 4544444
No 197
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.37 E-value=0.56 Score=42.48 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.+|...|..--+..-.+.|..+|.+.++ .+..+ +++.++++|.-+|. ++.+-|.++|+.=.+. +.-+..-....++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 4688888888888889999999999998 77777 77888999998886 5788899998763332 2344556678888
Q ss_pred HHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 244 MYGKCAFVEEMVKLFEVMPER------NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
-+...|+-..|..+|++.... ...+|..+|.--..-|+...+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888999999999999998753 3468999999999999999999988887
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.32 E-value=0.0048 Score=40.89 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---------CC-hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVMPE---------RN-LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~-~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+|+.+...|.+.|++++|+..|++..+ ++ ..+++.+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443331 11 234444555555555555555555443
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.31 E-value=0.11 Score=37.62 Aligned_cols=50 Identities=8% Similarity=-0.092 Sum_probs=23.8
Q ss_pred cCCChhHHHHHHHHHHhhcCCCch--hhHHHHHHHHHHhcCChhHHHHHHHhc
Q 037178 109 HEKDIEIGKRVHELVSASTQFSND--FIINTRLITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 109 ~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m 159 (311)
..|+.++|..+|++.. ..|+... ...+-.+-+.|-..|++++|..+|++.
T Consensus 13 ~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 13 SLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred hcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555 4444332 122333444444445555555555443
No 200
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.24 E-value=0.00079 Score=50.68 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChh
Q 037178 102 VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYT 181 (311)
Q Consensus 102 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~ 181 (311)
.+++.+.+.+.++....+++.+. ..+...+....+.|+..|++.+..++..++++.... .....++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 35677778888888888999988 666567788899999999999888888888774332 44456777778888888
Q ss_pred hHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 182 DVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
+|..++.++.. ..- .+..+...++++.|.++..+ ..+..+|..+++.+...++
T Consensus 88 ~a~~Ly~~~~~-~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGN-HDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTT-HTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHccc-HHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 88888877754 111 11113444556666543322 2345667777766655543
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.11 Score=42.63 Aligned_cols=143 Identities=7% Similarity=-0.057 Sum_probs=82.6
Q ss_pred CHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178 79 SLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS 158 (311)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 158 (311)
..+..+++|++-.. ..-+.+++.+...|.+.-...++...+ +..-+.+......|++.-.+.|+.+.|...|++
T Consensus 164 ~~ESsv~lW~KRl~-----~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 164 AEESSIRLWRKRLG-----RVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred chhhHHHHHHHHHH-----HHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45666777766443 444556666666666666677777776 555455666667777777777777777777775
Q ss_pred cCCC----ChHHHH-----HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 159 LKTR----NLFQWN-----ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 159 m~~~----~~~~y~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
..+. |..+.+ .....|.-++++.+|...|.+...... -|....|.-.-+..-.|+..+|.+..+.|+..
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5421 222222 223344555677777777766654111 12233333333334456777777777777665
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.08 E-value=0.025 Score=42.59 Aligned_cols=71 Identities=21% Similarity=0.132 Sum_probs=47.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHh----hcCCCchhhHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSA----STQFSNDFIIN 136 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~~ 136 (311)
....++..+...| ++++|..+.+.+.. .+-|...|..+|.++...|+...|.++|+.+.. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455666666778 88888888888888 666777888888888888888888888876542 35777776553
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.27 Score=41.08 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhC---CChhhHHHHHHHhhhcCCCCCCc-chHH
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKN---ELYTDVLSIFVELSSDTELKPDN-FTFP 204 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~p~~-~t~~ 204 (311)
|...|-.|-..|...|+++.|..-|.+-. .+|...+..+..++..+ ....++..+|+++.. ..|+. .+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHHHH
Confidence 44455555555555555555555554432 12333333333333222 123345555555543 33332 2333
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHh
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.|-..+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3444455555555555555555544
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.01 E-value=0.015 Score=37.44 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVS 124 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~ 124 (311)
.|..+-..+.+.| ++++|+..|++..+ .+-+...|..+..++...| ++++|.+.++...
T Consensus 5 ~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444445555555 55555555555555 3333444444555555555 4555555554443
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.12 Score=43.09 Aligned_cols=110 Identities=10% Similarity=-0.005 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH---hccCChhhHHHHHHHHHHhCCCCcHHHHH
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC---GGIADVGFGSGVHGMAAKMGLIGDVFVSN 239 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 239 (311)
|+..|-.|-.+|...|+++.|..-|.+..+-.|-. ...+..+..++ ....+-.++..+++++.+.. +-|..+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 78889999999999999999999999986623333 33344444443 33445678899999998876 55777777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHH
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICG 275 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~ 275 (311)
-|-..+...|++.+|...|+.|.+ |.-..+..+|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 788889999999999999999986 444555555543
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.81 E-value=0.019 Score=37.91 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC---------CC-hHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT---------RN-LFQWNALVSGFTKNELYTDVLSIFVE 189 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~---------~~-~~~y~~li~~~~~~g~~~~a~~~~~~ 189 (311)
+|+.+-..|...|++++|+..|++..+ ++ ..+++.+...|...|++++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444455555444444443220 11 23444444555555555555555444
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.77 E-value=0.047 Score=41.09 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHH-----hCCCCcHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAK-----MGLIGDVFV 237 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 237 (311)
+...++..+...|++++|.++.+.... ..| |...|..+|.++...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555556666666666655544 223 445566666666666666666665555432 255555544
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.69 E-value=0.039 Score=35.80 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.|.+.+++++|.++++++.. ..|+ ...+...-..+.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44555555555555555544 2232 233444444555555555555555555544
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.68 E-value=0.045 Score=35.53 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=40.3
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
..|.+.+ ++++|+++++.+.. .+.+...+......+...|++++|.+.++...
T Consensus 3 ~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4566777 88888888888887 55566667777777778888888888888777
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.65 E-value=0.16 Score=45.04 Aligned_cols=63 Identities=10% Similarity=-0.119 Sum_probs=51.5
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CCCh----HHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TRNL----FQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
+.+...++.+..+|.+.|++++|...|++.. +|+- .+|..+..+|...|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456788889999999999999999998854 3442 4589999999999999999999998876
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.57 E-value=0.15 Score=42.55 Aligned_cols=92 Identities=5% Similarity=-0.113 Sum_probs=73.1
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHH
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN----LVSWNSI 272 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~y~~l 272 (311)
..|...+.-..+.|++++|...|+.+.+..-... ..++--+...|...|++++|...|+.+.+ |+ ...+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3466666655677999999999999998742211 35777888999999999999999999984 33 3455566
Q ss_pred HHHHHhCCCcchHHHHHHhh
Q 037178 273 ICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 273 i~~~~~~g~~~~a~~l~~~m 292 (311)
...+...|+.++|.++|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77888999999999999998
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.49 Score=43.22 Aligned_cols=188 Identities=12% Similarity=-0.013 Sum_probs=117.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh-----hHHHHHHHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF-----IINTRLITM 142 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-----~~~~~ll~~ 142 (311)
-+....+.| +.-...+|.-+.. ++|. +..++...+-.||-+.+.+.+.+..+..++.-.. -.|...+..
T Consensus 164 ~~d~~~~sg--v~~G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~ 238 (468)
T PF10300_consen 164 PIDEFFESG--VYFGFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPS 238 (468)
T ss_pred hhHHHHHHh--HHHHHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 455555555 4555666666666 5443 4456666777889999988888877333333221 234444444
Q ss_pred HHh----cCChhHHHHHHHhcCC--CChHHHHHH-HHHHHhCCChhhHHHHHHHhhhcCC--CCCCcchHHHHHHHHhcc
Q 037178 143 YSL----CGFPLDSRRVFDSLKT--RNLFQWNAL-VSGFTKNELYTDVLSIFVELSSDTE--LKPDNFTFPCVIKACGGI 213 (311)
Q Consensus 143 ~~~----~g~~~~A~~l~~~m~~--~~~~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~~~--~~p~~~t~~~li~~~~~~ 213 (311)
++. ....+.|.++++.+.+ |+...|... ...+...|+.++|++.|++...... .......+--+.-.+.-.
T Consensus 239 ~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 239 FLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred HcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH
Confidence 443 3567788899988876 676666443 3444567899999999986543011 111233444555567778
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHH-HHHhcCCH-------HHHHHHHhhCC
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIA-MYGKCAFV-------EEMVKLFEVMP 262 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~ 262 (311)
+++++|.+.+..+.+.. ..+..+|.-+.. +|...|+. ++|.++|.+..
T Consensus 319 ~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred chHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 89999999999888764 444555554443 34456777 88888887765
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.45 E-value=0.99 Score=39.53 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=11.8
Q ss_pred HHHHhcccCCChhHHHHHHHHHH
Q 037178 102 VLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 102 ~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
.++-+|....+++...++.+.+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~ 168 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLE 168 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhh
Confidence 33334445555555555555555
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.17 E-value=1.5 Score=36.17 Aligned_cols=165 Identities=8% Similarity=-0.036 Sum_probs=90.2
Q ss_pred hcccCCChhHHHHHHHHHHhhcCCCchhhHH---HHHHHHHHhcCChhHHHHHHHhcCC--C--ChHHHHHHHHHHHh--
Q 037178 106 ACGHEKDIEIGKRVHELVSASTQFSNDFIIN---TRLITMYSLCGFPLDSRRVFDSLKT--R--NLFQWNALVSGFTK-- 176 (311)
Q Consensus 106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~l~~~m~~--~--~~~~y~~li~~~~~-- 176 (311)
.+...|+++.|...|+.+. ..- +-+.... -.+..+|.+.|++++|...|++..+ | .-+.|-..+.|.+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~-~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALD-NRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3345677777777777776 322 1111221 2355666777777777777776542 2 22333333333321
Q ss_pred CC---------------Ch---hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178 177 NE---------------LY---TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS 238 (311)
Q Consensus 177 ~g---------------~~---~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 238 (311)
.+ +. .+|+..|++ +|+-|=...-..+|...+..+...= ...-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~l----a~~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRL----AKYE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHH----HHHH
Confidence 00 11 122222333 3333333333444444333332210 0011
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMPE--RNL----VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
-.+...|.+.|++..|..=|+.+.+ |+. .....++.+|...|..++|.++...+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1455678889999888888888875 433 35667889999999999998887766
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=3 Score=39.43 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc------CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH------NADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
-+.++|..+.+..-..| +++-|..+++.=.. .-.+..-+...+.-+...|+.+....++-++.
T Consensus 505 ~~~iSy~~iA~~Ay~~G-R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEG-RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCceeHHHHHHHHHhcC-cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 56678999999888999 99999998875443 22234456777888888899888888777766
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.01 E-value=0.21 Score=44.44 Aligned_cols=64 Identities=11% Similarity=-0.060 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc----hHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF----TFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
+...|+.+..+|.+.|++++|+..|++..+ +.|+.. +|..+..+|...|++++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667899999999999999999999999866 567743 5888999999999999999999988775
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.90 E-value=1.1 Score=33.25 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI 213 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~ 213 (311)
..++..+.+.+........++.+... +....|.++..|++.+ ..+..+.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 35677777778888888888776533 4556788888888753 3344444432 13456666778888888
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-AFVEEMVKLFEVMPERNLVSWNSIICGFSE 278 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~y~~li~~~~~ 278 (311)
+.++++..++..+.. |...++.+... ++++.|.+.+.+-. +...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 877777777765422 12233333334 77888888777633 45567777766654
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.73 E-value=0.54 Score=34.41 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178 238 SNALIAMYGKCAFVEEMVKLFEVMP---ERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF 299 (311)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~ 299 (311)
....++.+.+.|+-+.-.+++.++. ++++...-.+..+|.+-|+..++.+++++. .+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A--CekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA--CEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH--HHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH--HHhch
Confidence 3444455555555555555555543 345555555555566666666666666655 55554
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.7 Score=43.42 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=88.4
Q ss_pred cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHH
Q 037178 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCV 206 (311)
Q Consensus 127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~l 206 (311)
.|..-..-+.+--+.-+...|+..+|.++-.+.+-||-..|--=+.+++..++|++-+++-+.++. ..-|.-.
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PF 750 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPF 750 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhH
Confidence 343333344455566677789999999999999988888888888889999998888777655542 3446668
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+.+|.+.|+.++|.+++.+.. +. .-.+.+|.+.|++.+|.++--+-+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~-----~l----~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVG-----GL----QEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHHhcccHHHHhhhhhccC-----Ch----HHHHHHHHHhccHHHHHHHHHHhc
Confidence 889999999999998876532 11 157788899999988887665433
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=1.3 Score=37.88 Aligned_cols=150 Identities=9% Similarity=-0.104 Sum_probs=106.9
Q ss_pred hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHhcCChhH
Q 037178 75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSNDFIINTRLITMYSLCGFPLD 151 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~ll~~~~~~g~~~~ 151 (311)
-+| ++.+|-..++++.. .+.|...+...=.+|.-.|+.+.....++.+.-+.+ ++...++-..+--++..+|.+++
T Consensus 115 ~~g-~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRG-KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccc-cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456 88888889999988 888888899888999999999998888888872222 22223344445555668899999
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC--CCCcchHHHHHHHHhccCChhhHHHHHHH
Q 037178 152 SRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL--KPDNFTFPCVIKACGGIADVGFGSGVHGM 225 (311)
Q Consensus 152 A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 225 (311)
|++.-++-.+ .|.-+-.+..+.+-..|++.++.+.+.+-..+-.. ..-..-|-...-.+...+.++.|.++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9999988764 36666678888888999999999987765431110 01112233333345566899999999875
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=2.6 Score=35.40 Aligned_cols=143 Identities=7% Similarity=-0.005 Sum_probs=92.3
Q ss_pred HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC----ChHHHHHHHHHHHhCCCh
Q 037178 105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR----NLFQWNALVSGFTKNELY 180 (311)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~y~~li~~~~~~g~~ 180 (311)
......|+..++..+|+... ... +-+...--.|..+|...|+++.|..+++.++.. ......+-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al-~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQAL-QAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHH-HhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34557788888888888877 433 223444455888888888888888888888742 122233445566666666
Q ss_pred hhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCCHHH
Q 037178 181 TDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEE 253 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~ 253 (311)
.+..++-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++.. --|...-..|++.+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 666666555544 35 445555677778888888888776665554421 3355677777777777764443
No 222
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.28 E-value=0.63 Score=39.60 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh--c----CChhHHHHHHHhcCC-------CChHHHHHHHHHHHhCCC
Q 037178 113 IEIGKRVHELVSASTQFSNDFIINTRLITMYSL--C----GFPLDSRRVFDSLKT-------RNLFQWNALVSGFTKNEL 179 (311)
Q Consensus 113 ~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~--~----g~~~~A~~l~~~m~~-------~~~~~y~~li~~~~~~g~ 179 (311)
++....+++.|. +.|+..+..+|-+....... . ....+|.++|+.|++ ++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 466788889999 88998888777654333333 2 235678899999985 244566666665 3333
Q ss_pred ----hhhHHHHHHHhhhcCCCCCCcc--hHHHHHHHHhccCC--hhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178 180 ----YTDVLSIFVELSSDTELKPDNF--TFPCVIKACGGIAD--VGFGSGVHGMAAKMGLIGDVFVSNALIAM 244 (311)
Q Consensus 180 ----~~~a~~~~~~m~~~~~~~p~~~--t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 244 (311)
.+.+...|+.+.. .|+..+.. ..+.++.-+..... +.++.++++.+.+.|+++....|..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3566777888887 78876543 33333333322222 44788899999999998887777655443
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.28 E-value=1.6 Score=41.04 Aligned_cols=86 Identities=14% Similarity=0.030 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH---------
Q 037178 199 DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW--------- 269 (311)
Q Consensus 199 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y--------- 269 (311)
|....-.+.+.+.+.|.-++|.+.+-+ .+.+ .+.+..|...+++.+|.++-+...-|-+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 445555666677777777766665532 2211 2445566666677777777665553333221
Q ss_pred -----HHHHHHHHhCCCcchHHHHHHhhh
Q 037178 270 -----NSIICGFSENGFSCESFDLLIKMM 293 (311)
Q Consensus 270 -----~~li~~~~~~g~~~~a~~l~~~m~ 293 (311)
---|.-+-+.|++-+|.+++.+|.
T Consensus 922 ~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 922 ADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred hhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 113556677888888888888883
No 224
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=2.6 Score=38.22 Aligned_cols=193 Identities=8% Similarity=-0.022 Sum_probs=119.2
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHH-------HHhcccCCChhHHHHHHHHHHhhcCCCch
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVL-------LQACGHEKDIEIGKRVHELVSASTQFSND 132 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~g~~~~ 132 (311)
.++.-++..-.+|...| .+.+....-+...+ ..-...-|+.+ ..++.+.++.+.+...|.+.. .....||
T Consensus 255 ~~it~~~n~aA~~~e~~-~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL-te~Rt~~ 332 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERG-KYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL-TEHRTPD 332 (539)
T ss_pred hhhHHHHHHHHHHHhcc-HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh-hhhcCHH
Confidence 34444677777888888 77777766665544 22223333333 335556678888888888877 4443444
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcC--CCChH-HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLK--TRNLF-QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~ 209 (311)
.. .+....+++.+..+... .|... ---.-...+.+.|++..|+..|.++.. .. +-|...|..-.-+
T Consensus 333 ~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk-r~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 333 LL---------SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK-RD-PEDARLYSNRAAC 401 (539)
T ss_pred HH---------HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cC-CchhHHHHHHHHH
Confidence 33 23344455555554432 23221 111225667888999999999999876 33 3357789999999
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLV 267 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 267 (311)
|.+.|.+..|.+=-+.-.+.. ++....|.-=..++.-..++++|++.|++..+.|..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999988887666555543 223333333333444455788888888888876643
No 225
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.06 E-value=3.6 Score=37.35 Aligned_cols=176 Identities=15% Similarity=0.070 Sum_probs=123.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
|-...-++|..+.++. .+.-+..+..+|....-+-..|..++..|... .-+.-..+|+++. +..+. |.+.-.-|..
T Consensus 65 ~d~~l~~~~~~f~~n~-k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~v-e~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNH-KNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLV-EYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccch-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHH-Hhcch-hHHHHHHHHH
Confidence 4445678888898888 88888888888888556677788888888877 5677788899888 66543 3333333555
Q ss_pred HHHhcCChhHHHHHHHhcCCC------Ch---HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 142 MYSLCGFPLDSRRVFDSLKTR------NL---FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~~------~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
.|-+ ++.+.+...|.....+ +. ..|.-++.. -..+.+...++..+++.+.|..--.+.+--+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 8888888888775422 11 357766663 2357788888888887756666666777777778888
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY 245 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 245 (311)
..++++|.+++..+.+.. .-|.-.-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 889999999988777665 33444444555443
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.93 E-value=1.7 Score=38.71 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH---NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+.|...|++..+.. .++.|..+|-+.++ +.+++..++++|.-++ .|+...|..+|+.-. .. ++.+..--+..
T Consensus 397 t~v~C~~~N~v~r~~-Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl-~~-f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKR-GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGL-LK-FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHh-hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHH-Hh-CCCchHHHHHH
Confidence 456788888888887 79999999999888 6788888888888765 467778888888654 22 22333334567
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC---C--hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTR---N--LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG 211 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~---~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~ 211 (311)
+..+...++-+.|..+|+.-.++ + ...|..+|+-=..-|+...|..+=++|.. +.|-..+..+..+-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---~~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---HcCcHhHHHHHHHHHh
Confidence 88888889999999999965432 2 35688999988899999999888888866 5666666555555554
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.92 E-value=0.59 Score=34.17 Aligned_cols=87 Identities=20% Similarity=0.082 Sum_probs=65.8
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH---HHHHHHHHHhc
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII---NTRLITMYSLC 146 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~---~~~ll~~~~~~ 146 (311)
.+.++.| +.+.|++.|.+... .+-....||.-..++--.|+.++|.+-+++..+-.|-. .... |.---..|-..
T Consensus 51 valaE~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3567888 99999999999998 77788999999999999999999999999888444422 3222 33333455666
Q ss_pred CChhHHHHHHHhc
Q 037178 147 GFPLDSRRVFDSL 159 (311)
Q Consensus 147 g~~~~A~~l~~~m 159 (311)
|+.+.|..=|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 8888887777654
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.92 E-value=4.1 Score=35.73 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=54.3
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcc--cCCChhHHHHHHHHHHhhcCCCchhhHHH--HHHHHHHhcCChhHHH
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACG--HEKDIEIGKRVHELVSASTQFSNDFIINT--RLITMYSLCGFPLDSR 153 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~ 153 (311)
+-..|.++-.+... +.-|..-+..++.+-. -.|+.+.|.+-|+.|. . .|...... .|.-.--+.|..+.|.
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~---dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-D---DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-c---ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 45555555555444 4445554444444322 3466666666666665 2 12221111 1111112335555554
Q ss_pred HHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc
Q 037178 154 RVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN 200 (311)
Q Consensus 154 ~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 200 (311)
..-++--+ | -.-.+.+.+...|..|+|+.|+++.+.-++..-+.+++
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 44443321 1 22345556666666666666666665554433344443
No 229
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.77 E-value=2.4 Score=32.61 Aligned_cols=125 Identities=7% Similarity=-0.080 Sum_probs=73.5
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS 172 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~ 172 (311)
++|+...+..++..+.+.|+..... ++. ..++-+|.......+-.+. +....+.++=-+|.++=...+..+++
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~----qll-q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~~~~~iie 97 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLH----QLL-QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGTAYEEIIE 97 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHH----HHH-hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhhhHHHHHH
Confidence 6677778888888888887765533 333 4454555444443332222 22233333333333332335667777
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.+...|++-+|.+....... -+......++++..+.+|...-..+++...++
T Consensus 98 vLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 98 VLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888776532 23334466777777777777666666666554
No 230
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.75 E-value=0.062 Score=40.24 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=32.9
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+|+.+.+.+..+...++++.+.+.+...+....+.++..|++.++.++.+++++.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~ 67 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT 67 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence 4555555666666666666666555455566666666666666666666666653
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.72 E-value=2 Score=38.31 Aligned_cols=125 Identities=11% Similarity=0.115 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCC-CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTE-LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.+|...|..-.+..-.+.|..+|.+..+ .| +.++++.++++|..++. |+...|..+|+.=... ++-+..--+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4577888888888889999999999988 77 77889999999998775 6777888888753322 2333444456777
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CC--hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 244 MYGKCAFVEEMVKLFEVMPE---RN--LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~---~~--~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
-+.+-++-+.|..+|+...+ .+ ..+|-.+|.--..-|+...|..+=++|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 77888999999999996654 23 357888888888888887776665555
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.68 E-value=1.5 Score=39.61 Aligned_cols=158 Identities=16% Similarity=0.054 Sum_probs=101.9
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH
Q 037178 107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~ 186 (311)
..-.++++.+.++.+.-.--..++ ..-.+.++..+-+.|..+.|+++-.+- ..-.+...+.|+.+.|.++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHH
Confidence 345677777666665211011222 445788999999999999999886542 2233344678999999887
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 037178 187 FVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL 266 (311)
Q Consensus 187 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 266 (311)
-++. .+...|..|-+...+.|+++-|++.+.+..+ +..|+-.|.-.|+.+.-.++.+...+.+.
T Consensus 341 a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 341 AKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp CCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5433 3667999999999999999999999987543 45788888889998888777766554322
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+|....++.-.|+.++..+++.+-
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 556666667778888887777654
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=0.6 Score=38.55 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC--C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT--R----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVI 207 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~--~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li 207 (311)
.|+.-+.. .+.|++.+|...|....+ | ....+-=|..++...|++++|..+|..+.++.+-.|-. ..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46544443 344556666666665543 1 11233335566666666666666666665534333332 4555555
Q ss_pred HHHhccCChhhHHHHHHHHHHh
Q 037178 208 KACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 234
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.7 Score=39.01 Aligned_cols=105 Identities=9% Similarity=-0.078 Sum_probs=80.6
Q ss_pred hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc
Q 037178 53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLH-----NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST 127 (311)
Q Consensus 53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 127 (311)
.-|......++.+-..++..-.... +++.+...+-+++. ..++ .+-.++++.|.+. +++++..++..=+ ..
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllky-~pq~~i~~l~npI-qY 129 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLKY-DPQKAIYTLVNPI-QY 129 (418)
T ss_pred hhhhcCCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHcc-ChHHHHHHHhCcc-hh
Confidence 4456666667777788888777788 89999999888876 2333 2334455555443 5678888888888 89
Q ss_pred CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 037178 128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT 161 (311)
Q Consensus 128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 161 (311)
|+-||..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999988777653
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=93.47 E-value=0.37 Score=36.73 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=37.5
Q ss_pred HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHH
Q 037178 74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS 152 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 152 (311)
-..| ++++|..+|+-+.. ..-+..-|..+..++-..+.+++|...|.... ..+. -|...+-..-.+|...|+.+.|
T Consensus 48 y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3445 55555555555444 22233333333334444455555555555444 3321 2222222244555555555555
Q ss_pred HHHHHhc
Q 037178 153 RRVFDSL 159 (311)
Q Consensus 153 ~~l~~~m 159 (311)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555443
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.38 E-value=5.2 Score=35.18 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=102.5
Q ss_pred hcCCCCCcccHH---HHHHHHHhcCCCHHHHHHHHHhhccC-CC----ChhhHHHHHHhccc---CCChhHHHHHHHHHH
Q 037178 56 TNNASTQGLHFL---QEITTLCEESKSLNKALSLLQENLHN-AD----LKEATGVLLQACGH---EKDIEIGKRVHELVS 124 (311)
Q Consensus 56 ~~~~~~~~~~~~---~li~~~~~~g~~~~~a~~~~~~m~~~-~~----~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~ 124 (311)
.++..|...+=. .++-.|-... +++..+++++.+... .. ....--...-++-+ .|+.++|.+++..+.
T Consensus 131 ~rLd~~~~ls~div~~lllSyRdiq-dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 131 QRLDDPELLSPDIVINLLLSYRDIQ-DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred HhhCCHhhcChhHHHHHHHHhhhhh-hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 344444444433 3444677788 999999999999882 11 11111223344456 899999999999966
Q ss_pred hhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--
Q 037178 125 ASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT-- 202 (311)
Q Consensus 125 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t-- 202 (311)
...-.++..+|..+...|-.. |.+-...|.. ..++|+..|.+--+ +.||.++
T Consensus 210 -~~~~~~~~d~~gL~GRIyKD~---------~~~s~~~d~~-------------~ldkAi~~Y~kgFe---~~~~~Y~GI 263 (374)
T PF13281_consen 210 -ESDENPDPDTLGLLGRIYKDL---------FLESNFTDRE-------------SLDKAIEWYRKGFE---IEPDYYSGI 263 (374)
T ss_pred -hccCCCChHHHHHHHHHHHHH---------HHHcCccchH-------------HHHHHHHHHHHHHc---CCccccchH
Confidence 445567777887777666432 1111111111 15666666665533 3455443
Q ss_pred -HHHHHHHHhccC-ChhhHHHHH----HHHHHhCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH
Q 037178 203 -FPCVIKACGGIA-DVGFGSGVH----GMAAKMGL---IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW 269 (311)
Q Consensus 203 -~~~li~~~~~~g-~~~~a~~~~----~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y 269 (311)
+.+|+....... .-.+..++. ..+.+.|. ..+--.+.++++++.-.|+.++|.+..++|...+...|
T Consensus 264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 333333332211 111222222 22223332 22444556777777778888888888888776544444
No 237
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.28 E-value=1.5 Score=34.26 Aligned_cols=94 Identities=14% Similarity=-0.023 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCC---CCc----HH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGL---IGD----VF 236 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~----~~ 236 (311)
.+..+..-|++.|+.++|.+.|.++.. ....+.. ..+..+|+.....|++..+.....+....-- .++ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345555555555555555555555554 4333332 2344555555555565555555544432211 111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+|..+.. ...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccC
Confidence 3333332 34678888888887765
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.05 E-value=3.1 Score=38.05 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC-CCh---------HHHHHHHHHHHhC----CChhhHHHHHHHhhhcCCCCCCcch
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT-RNL---------FQWNALVSGFTKN----ELYTDVLSIFVELSSDTELKPDNFT 202 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~-~~~---------~~y~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~t 202 (311)
..+++..+=.|+-+.+++++.+-.+ .++ ..|..++..++.. ...+.|.++++++.+ .-|+..-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RYPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hCCCcHH
Confidence 3466666777899999888877553 222 3577777766654 567889999999976 5688776
Q ss_pred HHHHH-HHHhccCChhhHHHHHHHHHHhC--C-CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHH-H
Q 037178 203 FPCVI-KACGGIADVGFGSGVHGMAAKMG--L-IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN---LVSWNSII-C 274 (311)
Q Consensus 203 ~~~li-~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~y~~li-~ 274 (311)
|...- +.+...|++++|.+.++...... . +.....+--+.-.++-.+++++|.+.|..+.+-+ ..+|.=+. .
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 65443 44678899999999999765321 1 2234555556667888999999999999999632 23333332 3
Q ss_pred HHHhCCCc-------chHHHHHHhh
Q 037178 275 GFSENGFS-------CESFDLLIKM 292 (311)
Q Consensus 275 ~~~~~g~~-------~~a~~l~~~m 292 (311)
++...|+. ++|.++|.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 44557777 8888888876
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.01 E-value=0.7 Score=38.70 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhh----cCCCCCCcchHHH
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSS----DTELKPDNFTFPC 205 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~t~~~ 205 (311)
..++..++..+..+|+.+.+.+.++++.+ | +...|..+|.+|.++|+...|++.|+++.. +.|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566677777777878877777777653 2 667788888888888888888877777644 2466665555544
Q ss_pred HHHH
Q 037178 206 VIKA 209 (311)
Q Consensus 206 li~~ 209 (311)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 240
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.01 E-value=1.6 Score=37.21 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=93.9
Q ss_pred cccHHHHHHHHHh-cCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhccc--CC----ChhHHHHHHHHHHhhcCC--Cc
Q 037178 63 GLHFLQEITTLCE-ESKSLNKALSLLQENLH--NADLKEATGVLLQACGH--EK----DIEIGKRVHELVSASTQF--SN 131 (311)
Q Consensus 63 ~~~~~~li~~~~~-~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~g~--~~ 131 (311)
..++.+++..... -...+++.+.+++.|.+ .+-+..+|.+..-.... .. ...++.++|+.|++.+.+ .+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 3444555544443 11135567777888887 66666777664333322 22 356799999999954443 45
Q ss_pred hhhHHHHHHHHHHhcCCh----hHHHHHHHhcCC-----CChHHHHHHHHHHHhCCC---hhhHHHHHHHhhhcCCCCCC
Q 037178 132 DFIINTRLITMYSLCGFP----LDSRRVFDSLKT-----RNLFQWNALVSGFTKNEL---YTDVLSIFVELSSDTELKPD 199 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~----~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~p~ 199 (311)
+-..+..|+.. ..++. +.++.+|+.+.+ .|..-+.+-|-++..... ...+.++++.+++ .|+++.
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik 216 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIK 216 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccc
Confidence 66677777655 33333 445666666543 344444444444443322 4578899999999 999998
Q ss_pred cchHHHHHHHH-hccCC---hhhHHHHHHHHHH
Q 037178 200 NFTFPCVIKAC-GGIAD---VGFGSGVHGMAAK 228 (311)
Q Consensus 200 ~~t~~~li~~~-~~~g~---~~~a~~~~~~m~~ 228 (311)
...|..+--.. ...+. ++...++.+.+.+
T Consensus 217 ~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 217 YMHYPTLGLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred cccccHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 88776553322 22222 3444455555543
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=5.1 Score=33.75 Aligned_cols=149 Identities=10% Similarity=-0.092 Sum_probs=105.8
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
-.......|++.+|..+|+...+ .+...--.++.+|...|+++.|..++..+.. .--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHHHhc
Confidence 34456778999999999988653 3556677889999999999999999999865 2222222333344555666666
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER-----NLVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
..+...+..+.-.. +-|...--.+...|...|+.++|.+.+-.+..+ |-..-..|+..+---|..|.+...++
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666665555433 347788888999999999999999988877753 45667778887777776555444443
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.73 E-value=1.2 Score=33.13 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHhcCChhHHHHHHHhcCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhcc
Q 037178 143 YSLCGFPLDSRRVFDSLKTR------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGI 213 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~ 213 (311)
..+.|++++|.+.|+.+..+ ...+--.++.+|.+.|++++|...+++..+-....| .+-|...+.|++.-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHH
Confidence 34557777777777777642 334455677777778888888877777765122222 24555556655443
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=92.66 E-value=0.62 Score=35.55 Aligned_cols=91 Identities=11% Similarity=-0.088 Sum_probs=66.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 169 ALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
...--+...|++++|..+|.-+.. ..|. ..-+..|-.++-..+++++|...|......+ .-|...+--...+|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 344456778999999999998876 3333 3334566666777889999999998776554 2344455566788889
Q ss_pred cCCHHHHHHHHhhCCC
Q 037178 248 CAFVEEMVKLFEVMPE 263 (311)
Q Consensus 248 ~g~~~~A~~~~~~m~~ 263 (311)
.|+.+.|+..|+...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999998887665
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.45 E-value=0.36 Score=27.80 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATG 101 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~ 101 (311)
.|..+-.+|.+.| ++++|.++|++..+ .+-|...+.
T Consensus 3 ~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHH
Confidence 3555666677777 77777777777766 433444443
No 245
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.8 Score=38.68 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=70.5
Q ss_pred cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-CCh-----HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc
Q 037178 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RNL-----FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN 200 (311)
Q Consensus 127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~~-----~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 200 (311)
.|.+....+...++..-....+.+++...+-+++. ++. .+-.+++.-+. .-++.+++.+...=.+ .|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence 34455555555555555556677777777666653 211 11122333333 3477799999888888 9999999
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
+|++.+|+.+.+.+++.+|..+.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.29 E-value=4.4 Score=40.49 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 037178 243 AMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m 261 (311)
..|++...+++|.++...-
T Consensus 1034 ~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHhhHhHHHHHHHHHHhc
Confidence 3344444455555544433
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.27 E-value=8.7 Score=34.90 Aligned_cols=163 Identities=10% Similarity=0.009 Sum_probs=88.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 68 QEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
.+|...=+.. +...-++.-++..++.||-.+.-+++ +--....+.++.+++++.. +.|- ..+. .......
T Consensus 173 ~IMq~AWRER-np~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAv-kAgE----~~lg---~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRER-NPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAV-KAGE----ASLG---KSQFLQH 242 (539)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHH-HHHH----Hhhc---hhhhhhc
Confidence 3344444555 67777777777777556543322222 2223455788888888887 4431 1100 0000000
Q ss_pred ChhHHHHHHHhcCCCC----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 037178 148 FPLDSRRVFDSLKTRN----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 223 (311)
. -..++.+..++ ...-.-+..+.-+.|+.++|++.|.+|.++....-+....-.|+.++...+.+.++..++
T Consensus 243 ~----g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 243 H----GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c----cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 01111122222 222234556666788889999998888651221122346668888888888888888888
Q ss_pred HHHHHhCCC-CcHHHHHHHHHH
Q 037178 224 GMAAKMGLI-GDVFVSNALIAM 244 (311)
Q Consensus 224 ~~m~~~g~~-~~~~~~~~li~~ 244 (311)
.+-.+...+ .-...|+..+--
T Consensus 319 ~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHhccccCCchHHHHHHHHHHH
Confidence 876443322 235667765543
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=1.6 Score=36.09 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc----CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-hhHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH----NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-FIINTRLI 140 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~ll 140 (311)
|+.-+..+ ..| ++..|...|..... ..-....+-.|..++...|+.+.|..+|..+....+-.|. ....-.|.
T Consensus 145 Y~~A~~~~-ksg-dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDLY-KSG-DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HcC-CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 55544433 555 56666666666555 1112233444555666666666666666666533222222 23444455
Q ss_pred HHHHhcCChhHHHHHHHhcC
Q 037178 141 TMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~ 160 (311)
.+..+.|+.++|..+|++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 55555566666666555544
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=2.3 Score=32.84 Aligned_cols=119 Identities=12% Similarity=-0.047 Sum_probs=74.5
Q ss_pred HhcCChhHHHHHHHhcCCCChHHHHHH-----HHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHH--HHhccCC
Q 037178 144 SLCGFPLDSRRVFDSLKTRNLFQWNAL-----VSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIK--ACGGIAD 215 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~~~y~~l-----i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~--~~~~~g~ 215 (311)
++.+..++|+.-|.++.+.+--.|-.| .......|+..+|...|.+.-. ..-.|-.. -..-|=. .+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677777777777776544444333 2344567888888888888866 33333222 1112222 2356777
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+++...-.+-+-..|-+.-...-.+|--+-.+.|++.+|.+.|..+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777776666555455555666677777788888888888887764
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.07 E-value=1.5 Score=39.09 Aligned_cols=134 Identities=6% Similarity=0.000 Sum_probs=83.8
Q ss_pred hcCCCHHHHHHHHHhhcc-CCCChhh------HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 75 EESKSLNKALSLLQENLH-NADLKEA------TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~-~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
+.+ ++.+|..+|.+... ...+... -+.+++++. ..+++..........+..|-.+-...+-.|+ +.+.+
T Consensus 18 kq~-~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k 93 (549)
T PF07079_consen 18 KQK-KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQK 93 (549)
T ss_pred HHh-hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhh
Confidence 446 89999999998877 4344333 245566654 4556666666666663444333333333222 24668
Q ss_pred ChhHHHHHHHhcCCC------------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC----CCCCcchHHH
Q 037178 148 FPLDSRRVFDSLKTR------------------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTE----LKPDNFTFPC 205 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~------------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~p~~~t~~~ 205 (311)
++++|.+.|....+. |...=+..++++.+.|++.++..++++|.. .= ..-+..+|+.
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~-~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE-RLLKRECEWNSDMYDR 172 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhhhhhcccHHHHHH
Confidence 888888887665421 122236677888888888888888888765 32 3367778877
Q ss_pred HHHHHhcc
Q 037178 206 VIKACGGI 213 (311)
Q Consensus 206 li~~~~~~ 213 (311)
++-.+++.
T Consensus 173 ~vlmlsrS 180 (549)
T PF07079_consen 173 AVLMLSRS 180 (549)
T ss_pred HHHHHhHH
Confidence 76666654
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.01 E-value=3.8 Score=30.18 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178 168 NALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL 231 (311)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 231 (311)
+..++...+.|+-+.-.+++.++.. +-.++....-.+..||.+.|+..++.+++.+..+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344445555555555555555432 2234444444555555555555555555555555553
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.89 E-value=4.5 Score=30.82 Aligned_cols=104 Identities=18% Similarity=0.106 Sum_probs=57.9
Q ss_pred HhcCChhHHHHHHHhcC--CC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 144 SLCGFPLDSRRVFDSLK--TR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~--~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
.+.++.++++.+++.+. .| ...++..++ +...|++.+|.++|+++.. . .|.. -|..-+-++|-...-+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~-~--~~~~-p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE-R--APGF-PYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc-c--CCCC-hHHHHHHHHHHHHcCCh
Confidence 45578888888888765 34 333444444 4578899999999998865 2 2333 33333334433333333
Q ss_pred HHHHH-HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178 219 GSGVH-GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 219 a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (311)
.++.+ +++.+.+-.|+. ..++..+.+..+...|..
T Consensus 95 ~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 34333 445555534333 455555555555555544
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.80 E-value=0.33 Score=26.58 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVE 189 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~ 189 (311)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556666666666666666655
No 254
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.77 E-value=1.7 Score=38.72 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=98.0
Q ss_pred cCCChhHHHHHHHHHHhhcCCCc---h-hhHHHHHHHHHHhcCChhHHHHHHHhcCCC-ChHHHHHHHHHH--HhCCChh
Q 037178 109 HEKDIEIGKRVHELVSASTQFSN---D-FIINTRLITMYSLCGFPLDSRRVFDSLKTR-NLFQWNALVSGF--TKNELYT 181 (311)
Q Consensus 109 ~~~~~~~a~~~~~~m~~~~g~~~---~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~~y~~li~~~--~~~g~~~ 181 (311)
+.++++++..+|..+.++..-.| . ....+.++++|.. ++++.....+....+. ....|-.+..+. .+.|.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 56788999999888873322122 1 3455677788775 3455555555444432 233455554443 4678889
Q ss_pred hHHHHHHHhhhc-CCCCC------------CcchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCcHHHHHHHHHH
Q 037178 182 DVLSIFVELSSD-TELKP------------DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIGDVFVSNALIAM 244 (311)
Q Consensus 182 ~a~~~~~~m~~~-~~~~p------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~ 244 (311)
+|.+.+..-... .+-.| |-.-=++.++++.+.|++.+++.+++++...= ...+..+|+-++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888887666541 12222 11122355667789999999999888877553 44889999998888
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 037178 245 YGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSEN 279 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~ 279 (311)
+++.=-+| +-+.+...=..-|--||..|.+.
T Consensus 177 lsrSYfLE----l~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 177 LSRSYFLE----LKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HhHHHHHH----HHHhcccccChHHHHHHHHHHHH
Confidence 87642221 11122221223466667777654
No 255
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.54 E-value=8.1 Score=36.26 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcH------
Q 037178 162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV------ 235 (311)
Q Consensus 162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------ 235 (311)
.+..+...+...+.+...+.-|-++|..|-. ...+++.....+++++|..+-+..-+. .+|+
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaq 812 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQ 812 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHH
Confidence 3445555555666666778888888888865 346778888889999998876654322 2222
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 236 -----FVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 236 -----~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.-+.-.-.+|-|+|+-.||.++++++.
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 122233356677777777777777765
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.36 E-value=0.39 Score=26.26 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCCcchHHHHHHh
Q 037178 269 WNSIICGFSENGFSCESFDLLIK 291 (311)
Q Consensus 269 y~~li~~~~~~g~~~~a~~l~~~ 291 (311)
|+.|-..|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444555555555555555554
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=7.3 Score=31.98 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
|.---.+|-.+. ++++|..-+.+..+ ...+...|+. ....+.|.-+.+++. +. +--+..|+.-...|.
T Consensus 34 yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~-kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELS-KL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHH-Hh--HHHHHHHHHHHHHHH
Confidence 555555666666 77777776666554 3233333322 233455556666665 32 233456777778888
Q ss_pred hcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc----CCCCCCcchHHHHHHHHhccCChhhHH
Q 037178 145 LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSD----TELKPDNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~~a~ 220 (311)
.+|..+.|-..+++.-+ ..++-++++|+++|++-... ...+.-..-|..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 88887777666655321 12334566666666554320 001111123455555667777777766
Q ss_pred HHHHHHHHh----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHhCCCcchHHHH
Q 037178 221 GVHGMAAKM----GLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPE-------RNLVSWNSIICGFSENGFSCESFDL 288 (311)
Q Consensus 221 ~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~y~~li~~~~~~g~~~~a~~l 288 (311)
..+..-... .-.++ -..|-+.|-.|.-..++..|.+.+++-.+ .+..+...|+.+|- .|+.+.+.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 555332211 11122 23455666667777899999999998443 35567788888874 4555655554
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=9.1 Score=32.99 Aligned_cols=144 Identities=8% Similarity=-0.056 Sum_probs=73.3
Q ss_pred hcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHH--HHHHHHhccCChh
Q 037178 145 LCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFP--CVIKACGGIADVG 217 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~--~li~~~~~~g~~~ 217 (311)
..|+..+|...++++.+ .|..+++--=.+|.-.|+...-...++++.- . -.||. ++|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-K-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-c-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555666555555543 2555666666666666666666666665543 1 12222 2222 2222334556666
Q ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----C---hhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER----N---LVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~---~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
+|++.-++..+-+ +.|.-...+....+-..|++.++.+...+-.+. + ..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6666655555444 345555555555556666666666655554431 0 1122223334445566666666665
Q ss_pred h
Q 037178 291 K 291 (311)
Q Consensus 291 ~ 291 (311)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=91.15 E-value=11 Score=33.93 Aligned_cols=125 Identities=15% Similarity=0.068 Sum_probs=61.8
Q ss_pred ccH--HHHHHHHHhcC----CCHHHHHHHHHhhc---cCCCC-hhhHHHHHHhcc---------cCCChhHHHHHHHHHH
Q 037178 64 LHF--LQEITTLCEES----KSLNKALSLLQENL---HNADL-KEATGVLLQACG---------HEKDIEIGKRVHELVS 124 (311)
Q Consensus 64 ~~~--~~li~~~~~~g----~~~~~a~~~~~~m~---~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~ 124 (311)
..| ...+++..+.. -..+.|+.+|.+.. +..|+ ...|..+.-++. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66666655421 03456777777777 34443 223322221111 1223344555555555
Q ss_pred hhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 125 ASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TRN-LFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 125 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
+.+ +-|......+-.+..-.|+++.|..+|++-. .|| ..+|........-+|+.++|.+.+++.
T Consensus 332 -eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 332 -DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred -hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444 3445555555555555566666666666543 332 233444444444556666666666663
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.14 E-value=10 Score=33.42 Aligned_cols=148 Identities=13% Similarity=0.021 Sum_probs=89.2
Q ss_pred HHhcCCCHHHHHHHHHhhccCCCChhhHHHHHH----hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 73 LCEESKSLNKALSLLQENLHNADLKEATGVLLQ----ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
-.-.| +.+.|.+-|+.|.. |++|-..=++ ..-+.|+.+.|.++-+..- ..- +--...+.+++...|..|+
T Consensus 130 al~eG-~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa-~~A-p~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 130 ALLEG-DYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAA-EKA-PQLPWAARATLEARCAAGD 203 (531)
T ss_pred HHhcC-chHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH-hhc-cCCchHHHHHHHHHHhcCC
Confidence 34568 99999999999997 6665433333 3457899999999888876 221 2345678889999999999
Q ss_pred hhHHHHHHHhcC-----CCChHH--HHHHHHHHHh---CCChhhHHHHHHHhhhcCCCCCCcch-HHHHHHHHhccCChh
Q 037178 149 PLDSRRVFDSLK-----TRNLFQ--WNALVSGFTK---NELYTDVLSIFVELSSDTELKPDNFT-FPCVIKACGGIADVG 217 (311)
Q Consensus 149 ~~~A~~l~~~m~-----~~~~~~--y~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~p~~~t-~~~li~~~~~~g~~~ 217 (311)
|+.|+++.+.-+ ++|+.- -..|+.+-.. ..+...|.+.-.+- ..+.||.+- -..-..++.+.|++.
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchh
Confidence 999999998754 333321 1122222111 11233333333222 234455432 223344556666666
Q ss_pred hHHHHHHHHHHh
Q 037178 218 FGSGVHGMAAKM 229 (311)
Q Consensus 218 ~a~~~~~~m~~~ 229 (311)
++-.+++.+-+.
T Consensus 281 Kg~~ilE~aWK~ 292 (531)
T COG3898 281 KGSKILETAWKA 292 (531)
T ss_pred hhhhHHHHHHhc
Confidence 666666665554
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.06 E-value=0.92 Score=26.02 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=6.6
Q ss_pred HHhccCChhhHHHHHHHH
Q 037178 209 ACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~m 226 (311)
++...|++++|.+++++.
T Consensus 10 ~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333333333333333333
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=2.9 Score=36.67 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=77.7
Q ss_pred HHHHHhcCChhHHHHHHHhcCC------------------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCc
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT------------------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK-PDN 200 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~------------------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~ 200 (311)
-+.|.+.|++..|..-|++... .-+.+++.+..++.+.+++.+|++.-.+... .. +|.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~ 291 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNV 291 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCch
Confidence 3567788888888888776321 0224577788888888888888888777654 33 345
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH-HHHHhhCC
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM-VKLFEVMP 262 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 262 (311)
...----.++...|+++.|+..|+.+.+.. +-|-.+-+-|+.+--+..+..+. .++|..|-
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556677788888888888888887764 33455555555554444444333 55666554
No 263
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=5.8 Score=35.04 Aligned_cols=227 Identities=10% Similarity=-0.080 Sum_probs=132.8
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCCChhHHHHHHHHHH---------------h
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEKDIEIGKRVHELVS---------------A 125 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~---------------~ 125 (311)
++.-|..-...+...| ++++|+--.++-.+++|. .......-+++...++..+|.+.++.-. .
T Consensus 82 ~a~yy~nRAa~~m~~~-~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~ 160 (486)
T KOG0550|consen 82 NASYYSNRAATLMMLG-RFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAP 160 (486)
T ss_pred chhhhchhHHHHHHHH-hHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccc
Confidence 3444666666677777 788777777666663222 3344444555555555555554443211 0
Q ss_pred hcCCCchhhHHHHHH-HHHHhcCChhHHHHHHHhcCCCC-hHHHHHHHHHH--HhCCChhhHHHHHHHhhhcCCCCCCcc
Q 037178 126 STQFSNDFIINTRLI-TMYSLCGFPLDSRRVFDSLKTRN-LFQWNALVSGF--TKNELYTDVLSIFVELSSDTELKPDNF 201 (311)
Q Consensus 126 ~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~l~~~m~~~~-~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~p~~~ 201 (311)
..--+|...++-.|- .++.-.|+.++|.+.--...+-| .-.+...+.+. .-.++.+.|...|++-.. ..|+..
T Consensus 161 s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~ 237 (486)
T KOG0550|consen 161 SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQ 237 (486)
T ss_pred cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhh
Confidence 011123334443222 33445577787777655544322 22333333333 345677788888877654 556544
Q ss_pred hHHHH---HH----------HHhccCChhhHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 037178 202 TFPCV---IK----------ACGGIADVGFGSGVHGMAAKM---GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN 265 (311)
Q Consensus 202 t~~~l---i~----------~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 265 (311)
.-... .+ -..+.|.+.+|.+.+.+.+.. ..+++...|........+.|+.++|..--++..+-|
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 32222 22 235788899999998887654 356677788888888889999999998888888766
Q ss_pred hh---hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 266 LV---SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 266 ~~---~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.. .|-.-..++.-.++|++|.+-++..
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 3333334555567777777777665
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.91 E-value=1.8 Score=36.26 Aligned_cols=59 Identities=19% Similarity=0.062 Sum_probs=28.1
Q ss_pred hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhc
Q 037178 99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m 159 (311)
++..++..+...|+.+.+...++++. ... +-+...|..+|.+|.+.|+...|...|+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li-~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLI-ELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34444444444455555555555444 222 334444555555555555555555555444
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.86 E-value=9 Score=32.33 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=122.9
Q ss_pred HhcCCCHHHHHHHHHhhcc-C-CCChhh--------HHHHHHhcccCC-ChhHHHHHHHHHHhhc--------CCCch--
Q 037178 74 CEESKSLNKALSLLQENLH-N-ADLKEA--------TGVLLQACGHEK-DIEIGKRVHELVSAST--------QFSND-- 132 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~~-~-~~~~~~--------~~~ll~~~~~~~-~~~~a~~~~~~m~~~~--------g~~~~-- 132 (311)
.+.| +++.|..++.+... . ..++.. |+.-...+ ..+ +++.|...+++.. +. ...++
T Consensus 4 ~~~~-~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~-~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 4 WKQG-DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAY-DILEKPGKMDKLSPDGS 80 (278)
T ss_pred hhhC-CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHH-HHHHhhhhccccCCcHH
Confidence 3567 89999999998887 2 333332 33333333 344 7777766666544 22 12222
Q ss_pred ---hhHHHHHHHHHHhcCChhH---HHHHHHhcCC--CC-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 133 ---FIINTRLITMYSLCGFPLD---SRRVFDSLKT--RN-LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 133 ---~~~~~~ll~~~~~~g~~~~---A~~l~~~m~~--~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
..+...|+.+|...+..+. |.++++.+.. ++ ...+---+..+.+.++.+++.+++.+|.. . +.-....+
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~-~-~~~~e~~~ 158 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR-S-VDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH-h-cccccchH
Confidence 3467788888888877654 5555555542 23 44555666777778999999999999986 2 33244556
Q ss_pred HHHHHHHhcc--CChhhHHHHHHHHHHhCCCCcHH--HHHHHHHHH---Hhc------CCHHHHHHHHhhCCC-----CC
Q 037178 204 PCVIKACGGI--ADVGFGSGVHGMAAKMGLIGDVF--VSNALIAMY---GKC------AFVEEMVKLFEVMPE-----RN 265 (311)
Q Consensus 204 ~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~---~~~------g~~~~A~~~~~~m~~-----~~ 265 (311)
..+++..... .....+...++.+....+.|... .=..++... .+. ++++...++++...+ -+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 6666655222 23456667777776665665543 111111111 111 125555555653321 12
Q ss_pred h--------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 266 L--------VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 266 ~--------~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
. ..|+. ...+.+.++++.|.++|+--
T Consensus 239 ~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 239 AEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHH
Confidence 1 23443 35567789999999999753
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.81 E-value=13 Score=33.92 Aligned_cols=78 Identities=5% Similarity=-0.035 Sum_probs=59.8
Q ss_pred CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---C--ChhhHHH
Q 037178 198 PDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI-GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---R--NLVSWNS 271 (311)
Q Consensus 198 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~~~y~~ 271 (311)
|-.++-.-+..++-+.|+.++|.+.+.+|.+..-. -+..+...|+.++...+.+.++..++.+-.+ | -...|+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 33444456777888999999999999999876422 2456888999999999999999999998764 2 2357877
Q ss_pred HHHH
Q 037178 272 IICG 275 (311)
Q Consensus 272 li~~ 275 (311)
.+--
T Consensus 337 ALLk 340 (539)
T PF04184_consen 337 ALLK 340 (539)
T ss_pred HHHH
Confidence 5543
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.78 E-value=9.2 Score=38.37 Aligned_cols=111 Identities=9% Similarity=0.006 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG 246 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 246 (311)
|.+....+...+.+++|.-.|+...+ .--.+.+|-..|++.+|..+..++.... .--..+--.|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH
Confidence 33344444455666666666655433 2235566666777777766665543211 001122245666666
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 247 KCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..|+.-+|-++..+-... +.-.+.-||+...+++|.++...-
T Consensus 1011 e~~kh~eAa~il~e~~sd----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 677777777666665431 233455666777777777766544
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.73 E-value=5.7 Score=30.27 Aligned_cols=72 Identities=13% Similarity=-0.092 Sum_probs=45.1
Q ss_pred HHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH-HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 172 SGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI-KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
..-.+.++.+++..++..++- +.|.......+- .-+...|++.+|.++++++.... |......+|+..|...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 334567788888888888865 666654433222 23467788888888888876553 4444445555544433
No 269
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.50 E-value=7.7 Score=30.96 Aligned_cols=162 Identities=9% Similarity=-0.013 Sum_probs=88.6
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C--ChHHHHHHHHHHHhC-
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R--NLFQWNALVSGFTKN- 177 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~--~~~~y~~li~~~~~~- 177 (311)
...+...|++.+|...|+.+...... +.-....-.+..++.+.|++++|...|+++.+ | ....+-..+.|.+.-
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34455778889999999888833221 12233444577888888888888888887652 2 222233233322211
Q ss_pred ------------CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178 178 ------------ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY 245 (311)
Q Consensus 178 ------------g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 245 (311)
+...+|... |..+|.-|=...-..+|...+..+.+.= ...--.+.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y 151 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFY 151 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 111222333 3344444444455555555444443220 01112356778
Q ss_pred HhcCCHHHHHHHHhhCCC--CChh----hHHHHHHHHHhCCCcchH
Q 037178 246 GKCAFVEEMVKLFEVMPE--RNLV----SWNSIICGFSENGFSCES 285 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~--~~~~----~y~~li~~~~~~g~~~~a 285 (311)
.+.|++..|..-++.+.+ |+.. ..-.|+.+|-+.|..+.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 888888888888888775 5543 456678888888877644
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.43 E-value=1.4 Score=34.38 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=39.1
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCC--ChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH--NAD--LKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
.+..+...|++.| +.+.|++.|.++.. ..+ -...+-.+|+.+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4667777777777 77777777777776 222 23445666677777777777766666554
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=5.8 Score=32.55 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=93.1
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhh-cCCCchh--hHHHHHHHHHHhcCChhHHHHHHH
Q 037178 81 NKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAS-TQFSNDF--IINTRLITMYSLCGFPLDSRRVFD 157 (311)
Q Consensus 81 ~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~ 157 (311)
+.|.-+.+++....--+..|+-....|...|.++.|-..++..-.. .++.||. ..|.--+...-..++...|.++
T Consensus 75 EqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-- 152 (308)
T KOG1585|consen 75 EQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-- 152 (308)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH--
Confidence 3333444444432223445666777777888887777666654411 2344543 2343333333333443333333
Q ss_pred hcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC----CCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhC--
Q 037178 158 SLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL----KPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMG-- 230 (311)
Q Consensus 158 ~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 230 (311)
|..+-.++++..++++|-..|.+-.. ... -++. ..|...|-.+.-..++..|.++++.--+.+
T Consensus 153 ---------~gk~sr~lVrl~kf~Eaa~a~lKe~~-~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 153 ---------YGKCSRVLVRLEKFTEAATAFLKEGV-AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred ---------HHHhhhHhhhhHHhhHHHHHHHHhhh-HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 45566677777788777766654322 111 1221 235555556666778888888887743332
Q ss_pred -CCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178 231 -LIGDVFVSNALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 231 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (311)
-+-+..+...|+.+| ..|+.|++.++..
T Consensus 223 ~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 223 LKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 233567788888887 4688888777664
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.89 E-value=5 Score=29.50 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=38.7
Q ss_pred HhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH---HHHHhcCC
Q 037178 175 TKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI---AMYGKCAF 250 (311)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~ 250 (311)
...|+.+.|++.|.+... +-| ....||.-..++.-.|+.++|..=+++..+..-.-+...+.+.+ ..|...|+
T Consensus 54 aE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445555555555555433 222 23445555555555555555555554444321111222222222 23445555
Q ss_pred HHHHHHHHhhC
Q 037178 251 VEEMVKLFEVM 261 (311)
Q Consensus 251 ~~~A~~~~~~m 261 (311)
.+.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 56555555543
No 273
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.77 E-value=0.84 Score=39.06 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=37.5
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
-|.+.|++++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 46778888888888877654 566 77888888888888887776665444443
No 274
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.55 E-value=7.4 Score=32.75 Aligned_cols=186 Identities=10% Similarity=-0.019 Sum_probs=100.9
Q ss_pred CCCCcccHHHHHHHHHhc----CCC--HHHHHHHHHhhcc-CCCCh-hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178 59 ASTQGLHFLQEITTLCEE----SKS--LNKALSLLQENLH-NADLK-EATGVLLQACGHEKDIEIGKRVHELVSASTQFS 130 (311)
Q Consensus 59 ~~~~~~~~~~li~~~~~~----g~~--~~~a~~~~~~m~~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 130 (311)
..|....++.++.-|... |.. -++-...++-... ...+. .-|..++.. ...+.+|..+|+...-+..+-
T Consensus 85 ~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~---N~~Vv~aL~L~~~~~~~~~Ii 161 (292)
T PF13929_consen 85 ADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKR---NKIVVEALKLYDGLNPDESII 161 (292)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHh---hHHHHHHHHHhhccCccccee
Confidence 355666666666655422 211 1233344444333 22221 114444432 334566667776443112345
Q ss_pred chhhHHHHHHHHHHhcCC--hhHHHHHHHhcC-----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 131 NDFIINTRLITMYSLCGF--PLDSRRVFDSLK-----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~--~~~A~~l~~~m~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
-|..+...|++......+ ...-.++.+-+. ..+..+-..+|..+++.+++.+-+++++.-....+..-|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 566666666666665221 222222222222 2455666778888888888888888877765423455577778
Q ss_pred HHHHHHHhccCChhhHHHHHHH-----HHHhCCCCcHHHHHHHHHHHHh
Q 037178 204 PCVIKACGGIADVGFGSGVHGM-----AAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~~~~ 247 (311)
..+|+.....|+..-..++.++ +++.|+..+...-..+-..+-+
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 8888888888887766666543 3444556666665555555443
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.11 E-value=9.1 Score=29.79 Aligned_cols=210 Identities=17% Similarity=0.044 Sum_probs=133.3
Q ss_pred CHHHHHHHHHhhccCCC---ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc-CCCchhhHHHHHHHHHHhcCChhHHHH
Q 037178 79 SLNKALSLLQENLHNAD---LKEATGVLLQACGHEKDIEIGKRVHELVSAST-QFSNDFIINTRLITMYSLCGFPLDSRR 154 (311)
Q Consensus 79 ~~~~a~~~~~~m~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~ 154 (311)
....+...+.......+ ....+......+...+....+...+.... .. ........+..+...+...+..+.+.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL-ELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH-hhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555566555555222 24666666777777777777777777765 32 334455566666777777777888888
Q ss_pred HHHhcCC--C-ChHHHHHHHH-HHHhCCChhhHHHHHHHhhhcCCCCC----CcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178 155 VFDSLKT--R-NLFQWNALVS-GFTKNELYTDVLSIFVELSSDTELKP----DNFTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 155 l~~~m~~--~-~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
.+..... + +......... .+...|+++.|...|++... ..| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 8777654 2 2122333333 67788888888888888743 333 2233334444456777888888888877
Q ss_pred HHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 227 AKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN---LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 227 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+.........+..+...+...+++++|...+....+.+ ...+..+...+...+..+.+...+.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 766422146777778888888888888888888777532 234444444444666777777777666
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.03 E-value=0.7 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=16.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 232 IGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 446677777777777777777664
No 277
>PRK11906 transcriptional regulator; Provisional
Probab=88.96 E-value=14 Score=33.29 Aligned_cols=162 Identities=8% Similarity=-0.087 Sum_probs=99.5
Q ss_pred hhH--HHHHHhcccC-----CChhHHHHHHHHHHhhcCCCchh-hHHHHHHHHHHh---------cCChhHHHHHHHhcC
Q 037178 98 EAT--GVLLQACGHE-----KDIEIGKRVHELVSASTQFSNDF-IINTRLITMYSL---------CGFPLDSRRVFDSLK 160 (311)
Q Consensus 98 ~~~--~~ll~~~~~~-----~~~~~a~~~~~~m~~~~g~~~~~-~~~~~ll~~~~~---------~g~~~~A~~l~~~m~ 160 (311)
..| ...+++.... .+.+.|..+|.+......+.|+- ..|..+-.++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 6666665542 23567888888887455566653 334333333222 123345555555543
Q ss_pred ---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHhC-CCCcH
Q 037178 161 ---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKMG-LIGDV 235 (311)
Q Consensus 161 ---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~ 235 (311)
..|..+...+..+..-.|+++.|..+|++... +.||.. +|...--.+.-.|+.++|.+.+++..+.. ...-.
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 34777777777777777889999999999866 667653 44444445566788999999988855442 22233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 236 FVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
.+..-.++.|+..+ +++|.+++-+-.+
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 44445556777654 6777777765443
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=9.1 Score=36.95 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCh-HHHHHHHHHHHhCCChhhHHHH
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKTRNL-FQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~~y~~li~~~~~~g~~~~a~~~ 186 (311)
+.|+.+|.|.++.++-.+..+...+... .-....+..+-+.+-.++|..+
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 4456666666665555555554441111 1133344444444444444444
No 279
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.25 E-value=6.8 Score=27.25 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 112 DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 112 ~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
..++|..+-+.+. ..+-. ...+--+-+..+...|++++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~-~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLH-LKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHh-cCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 3567777777765 43311 333444455666777888888888888888888888777664 6666666666666665
Q ss_pred h
Q 037178 192 S 192 (311)
Q Consensus 192 ~ 192 (311)
.
T Consensus 96 ~ 96 (115)
T TIGR02508 96 A 96 (115)
T ss_pred h
Confidence 5
No 280
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.22 E-value=5.9 Score=27.53 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..++|..+-+.+...+- ....+--+-+..++..|++++|..+.+.+.-||...|-+|-.. +.|-.+++..-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 45677777777666552 2444444555677889999999999999988999998776543 556666666666666
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.20 E-value=3 Score=29.03 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 82 KALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 82 ~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
+..+-++.+.. ..|++....+.+++|.+.+++..|.++++-++.+.|-. ...|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34444444444 77888888888888888888888888888887555433 226665553
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.76 E-value=4.4 Score=27.90 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=38.3
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
-++.+-+..+.. ..+.|+.....+.++||.+.+|+..|.++++-++.+. ..+...|..+++
T Consensus 24 we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344455555555 6667777777777777777777777777777665332 224445665554
No 283
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.76 E-value=14 Score=31.19 Aligned_cols=66 Identities=9% Similarity=-0.125 Sum_probs=32.3
Q ss_pred CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 195 ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 195 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+-.++..+...+|+.+++.+++.+..++++.-... +..-|...|..+|+.-.+.|+..-..++.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34445555555555555555555555555443333 3333445555555555555555544444443
No 284
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=9.6 Score=35.46 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 242 (311)
+..-|..|-++....|++..|.+.|.+.+. |..|+-.+...|+.+....+-....+.|.- |.-.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHH
Confidence 556688888888888888888888887765 667777777788877766666666666632 4445
Q ss_pred HHHHhcCCHHHHHHHHhhCC
Q 037178 243 AMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~ 262 (311)
-+|...|+++++.+++.+-.
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 56777899999998887653
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.26 E-value=1.4 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666544
No 286
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.90 E-value=6.1 Score=33.02 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
-.=|.|+++.+ +|.+++...-+-.. .+.-......-|-.|.+.+.+..+.++-..-. ...-.-+..-|.++...|.
T Consensus 87 vvGIQALAEmn-rWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMN-RWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHh-hHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHH
Confidence 34478999999 99999987665554 22223344445556778898888888877666 4333445555777777766
Q ss_pred h-----cCChhHHHHHHH
Q 037178 145 L-----CGFPLDSRRVFD 157 (311)
Q Consensus 145 ~-----~g~~~~A~~l~~ 157 (311)
. .|.+++|+++..
T Consensus 165 l~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHhccccHHHHHHHHh
Confidence 5 499999999873
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.62 E-value=18 Score=30.46 Aligned_cols=191 Identities=8% Similarity=0.004 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc----------CCCC-----hhhHHHHHHhcccCCCh---hHHHHHHHHHHh
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH----------NADL-----KEATGVLLQACGHEKDI---EIGKRVHELVSA 125 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~----------~~~~-----~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~ 125 (311)
..||.-...+.+.. +++.|...+++..+ ..++ ..++..++.++...+.. ++|..+.+.+..
T Consensus 37 ~~yn~G~~l~~~~~-~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 37 VCYNIGKSLLSKKD-KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45777777777775 67777666665543 2233 23456667777766654 557777777864
Q ss_pred hcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHH---HhCCChhhHHHHHHHhhhcCCCCCC
Q 037178 126 STQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGF---TKNELYTDVLSIFVELSSDTELKPD 199 (311)
Q Consensus 126 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~p~ 199 (311)
+.|-+|. ++-.-++.+.+.++.+++.+++.+|... ....+..++..+ ... ....|...+..+.. ..+.|.
T Consensus 116 e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~-~r~~~~ 191 (278)
T PF08631_consen 116 EYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLL-NRFKSS 191 (278)
T ss_pred hCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHH-HHhCCC
Confidence 4444444 4444577777789999999999998742 234555555555 443 34566666666655 455555
Q ss_pred cc-hH-HHHHHH---HhccC------ChhhHHHHHHHHHH-hCCCCcHHHHHHHHHH-------HHhcCCHHHHHHHHh
Q 037178 200 NF-TF-PCVIKA---CGGIA------DVGFGSGVHGMAAK-MGLIGDVFVSNALIAM-------YGKCAFVEEMVKLFE 259 (311)
Q Consensus 200 ~~-t~-~~li~~---~~~~g------~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~-------~~~~g~~~~A~~~~~ 259 (311)
.. -. ..++.. ....+ +++....+++.+.+ .+.+.+..+-.++... .-+.+++++|.+.|+
T Consensus 192 ~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 192 EDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred hhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 43 11 111111 12211 24455555554433 2334455555555444 346788999999887
No 288
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.60 E-value=1.5 Score=24.37 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+++.|...|...|++++|..++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHH
Confidence 444455555555555555555443
No 289
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.33 E-value=8.4 Score=28.87 Aligned_cols=80 Identities=6% Similarity=-0.024 Sum_probs=65.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-------CCCChhhHHHHHHhcccCCC-hhHHHHHHHHHHhhcCCCchhhHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-------NADLKEATGVLLQACGHEKD-IEIGKRVHELVSASTQFSNDFIIN 136 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-------~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~g~~~~~~~~ 136 (311)
..|.++.-.+..+ ++...+.+++.+.. ...+...|++++++.+.... .-.+..+|+.++ +.+.+.+..-|
T Consensus 41 fiN~iL~hl~~~~-nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy 118 (145)
T PF13762_consen 41 FINCILNHLASYQ-NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHcc-chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHH
Confidence 3688888888888 99999999888865 34567789999999987776 566789999998 77888999999
Q ss_pred HHHHHHHHhc
Q 037178 137 TRLITMYSLC 146 (311)
Q Consensus 137 ~~ll~~~~~~ 146 (311)
..+|.++.+.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 9999887765
No 290
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.25 E-value=3.4 Score=33.20 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCcHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGDVFVSNALI 242 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li 242 (311)
|.+..|+.+.+.+...+|+...++-.+ -+| |..+--.+++-+|-.|++++|..-++-.-+. ...+...+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 345667888889999999988777544 245 4556667888999999999998776655433 2344567788877
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC-----hhhHHHHHHH-H-HhCCCcchHHHHHHhh
Q 037178 243 AMYGKCAFVEEMVKLFEVMPERN-----LVSWNSIICG-F-SENGFSCESFDLLIKM 292 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~~-----~~~y~~li~~-~-~~~g~~~~a~~l~~~m 292 (311)
.+-.-. .++|..-..|+ ...|-..+.+ . +..+...+|.+-+++-
T Consensus 80 r~ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreq 130 (273)
T COG4455 80 RCEAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQ 130 (273)
T ss_pred HHHHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHH
Confidence 653221 23454444443 2345554443 2 2334355555555544
No 291
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.15 E-value=5.5 Score=34.98 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=53.1
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
+++.+..++.+.+ .+..|+..-++.+. -++|+-.+-.-.+++...|+++.|+..|+.++ +.. +-|..+-+-|+.+-
T Consensus 259 ~~lNlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLK-EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLE-PSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhh-hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHH
Confidence 4666666677777 77777777777766 55566666666667777777777777777766 332 22333333333333
Q ss_pred HhcCChh-HHHHHHHhc
Q 037178 144 SLCGFPL-DSRRVFDSL 159 (311)
Q Consensus 144 ~~~g~~~-~A~~l~~~m 159 (311)
-+..... ...++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3333322 234455554
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.06 E-value=23 Score=31.02 Aligned_cols=54 Identities=6% Similarity=-0.086 Sum_probs=25.5
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhcCCCC----CCcchHHHHHHHHhccCChhhHHHHH
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSDTELK----PDNFTFPCVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~----p~~~t~~~li~~~~~~g~~~~a~~~~ 223 (311)
+-.++...+.++++++.|+....-..-. .....|..|-+-|....|+++|.-+.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhh
Confidence 4444445555555555555543201110 12234555555555666665555443
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.00 E-value=1.2 Score=23.93 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=13.4
Q ss_pred chhhHHHHHHHHHHhcCChhHHH
Q 037178 131 NDFIINTRLITMYSLCGFPLDSR 153 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~ 153 (311)
-+...|+.|-..|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555666666666666666554
No 294
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.86 E-value=1.8 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345566666666666666666665543
No 295
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.24 E-value=1.3 Score=38.85 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=96.5
Q ss_pred HHHhcCCCHHHHHHHHHhhcc-CCCChhh----HHHHHHhcccCCChhHHHHHHHHHH--h-hcCCC-chhhHHHHHHHH
Q 037178 72 TLCEESKSLNKALSLLQENLH-NADLKEA----TGVLLQACGHEKDIEIGKRVHELVS--A-STQFS-NDFIINTRLITM 142 (311)
Q Consensus 72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~--~-~~g~~-~~~~~~~~ll~~ 142 (311)
-+++.| +.+....+|+...+ ..-|..| |.-+-++|.-.+++++|.+++..=. . ..|-+ -.......|-+.
T Consensus 26 RLck~g-dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMG-DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhcc-chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467889 99999999998888 4444443 5556667777788888887754311 0 01101 011122234444
Q ss_pred HHhcCChhHHHHH-HHhcC------CC--ChHHHHHHHHHHHhCCCh--------------------hhHHHHHHHh---
Q 037178 143 YSLCGFPLDSRRV-FDSLK------TR--NLFQWNALVSGFTKNELY--------------------TDVLSIFVEL--- 190 (311)
Q Consensus 143 ~~~~g~~~~A~~l-~~~m~------~~--~~~~y~~li~~~~~~g~~--------------------~~a~~~~~~m--- 190 (311)
+--.|.+++|.-. |+.+. .+ ...+|-.+...|...|+. +.|.+.|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666433 22221 11 223344455555544421 1233333221
Q ss_pred hhcCCCC-CCcchHHHHHHHHhccCChhhHHHHHHHHH----HhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 191 SSDTELK-PDNFTFPCVIKACGGIADVGFGSGVHGMAA----KMGL-IGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 191 ~~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
.+..|-. .-...|..|-+.|.-.|+++.|...++.=. +-|- ......+..+.+++.-.|+++.|.+.|+.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 1101111 123456666666666777777776665422 1221 12345666677777777777777666653
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.09 E-value=14 Score=27.79 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=30.0
Q ss_pred hCCChhhHHHHHHHhhhcCCCCCCcc---hHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 176 KNELYTDVLSIFVELSSDTELKPDNF---TFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
..++.+++..+++.|.- +.|+.. +|-..+ +...|++++|.++++++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 46677777777777754 455433 333333 356667777777777766554
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.98 E-value=5.2 Score=27.86 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=30.4
Q ss_pred hHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 182 DVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
+..+-+..+.. ..+.|+.....+.++||.+.+++..|.++++-++.+- ......|..+++
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33444444444 5566666666666666666666666666666554432 222225555554
No 298
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.95 E-value=14 Score=27.60 Aligned_cols=78 Identities=5% Similarity=-0.130 Sum_probs=55.2
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
...+.|++++|.+.|+.+..+....| ....-.-++.++.+.|++++|...+++.++..-.....-|-..+.+++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34567899999999999876333222 2345677888999999999999999999888644444566666666554433
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.80 E-value=4.6 Score=27.82 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHH
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSII 273 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li 273 (311)
|..++.+-++.+....+.|+..+..+-+.+|.|.+++.-|.++|+..+. .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 6667888888888889999999999999999999999999999997763 2334565554
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=12 Score=35.77 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCc---hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCCh
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSN---DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY 180 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~ 180 (311)
++.+.+.+.+++|..+-+.-. |..+ -..+...+|+.+.-.|++++|-.+.-.|...+...|.-.+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 344455566666666655433 3344 3456677888888888888888888888888888888888888877776
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHH------------------HHHHhCCCCcHHHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHG------------------MAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~------------------~m~~~g~~~~~~~~~~li 242 (311)
.....+. .. ..-..+...|-.++..+.. .+...-.++.. +..+. .-+...-..|.
T Consensus 440 ~~Ia~~l---Pt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 440 TDIAPYL---PT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred chhhccC---CC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 6554432 21 1112244456666665554 22222221111 11111 12233444588
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh
Q 037178 243 AMYGKCAFVEEMVKLFEVMPERNL 266 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~~~ 266 (311)
..|...|+++.|++++-...++++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHccChHHHHHHHHhccChHH
Confidence 999999999999999998887554
No 301
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.65 E-value=9.2 Score=32.02 Aligned_cols=86 Identities=5% Similarity=-0.148 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHh-cCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH--
Q 037178 137 TRLITMYSLCGFPLDSRRVFDS-LKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC-- 210 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~-m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~-- 210 (311)
..=|.+++..|+|.++....-+ ...| -.......|--|.|.|.+..+.++-..-.. ..-.-+...|.+++.-|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHH
Confidence 3347888888999888765433 3322 334455667778888888888887666544 21122233477666554
Q ss_pred ---hccCChhhHHHHH
Q 037178 211 ---GGIADVGFGSGVH 223 (311)
Q Consensus 211 ---~~~g~~~~a~~~~ 223 (311)
.=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 4568888888776
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.51 E-value=2.4 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHh
Q 037178 239 NALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~ 259 (311)
..+...+...|++++|.++++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 303
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.43 E-value=17 Score=28.17 Aligned_cols=194 Identities=15% Similarity=-0.006 Sum_probs=138.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH---NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
...+......+...+ .+..+...+..... .......+..........+....+...+.... .....+ .......
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLG-RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL-ALDPDP-DLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH-cCCCCc-chHHHHH
Confidence 456778888888888 99999998888764 34445566677777777888889999999887 443333 1222223
Q ss_pred HH-HHHhcCChhHHHHHHHhcCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHH
Q 037178 140 IT-MYSLCGFPLDSRRVFDSLKTR------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--NFTFPCVIKAC 210 (311)
Q Consensus 140 l~-~~~~~g~~~~A~~l~~~m~~~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~ 210 (311)
.. .+...|+++.|...|++...- ....+......+...++.+.+...+.+... ..++ ...+..+-..+
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHH
Confidence 33 788999999999999886432 223344444446778899999999999875 3333 56788888888
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
...++++.+...+.......-. ....+..+...+...|..+++...+.+..+
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888999999999888776422 234444444555577789999988887765
No 304
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.93 E-value=16 Score=27.42 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=60.1
Q ss_pred hcCCCchh--hHHHHHHHHHHhcCChhHHHHHHHhcCC---------CChHHHHHHHHHHHhCCC-hhhHHHHHHHhhhc
Q 037178 126 STQFSNDF--IINTRLITMYSLCGFPLDSRRVFDSLKT---------RNLFQWNALVSGFTKNEL-YTDVLSIFVELSSD 193 (311)
Q Consensus 126 ~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~---------~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~ 193 (311)
+.+..++. ...|++++-....+.+.....+++.+.. .+-..|.+++.+..++.- ---+..+|.-|++
T Consensus 30 ~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~- 108 (145)
T PF13762_consen 30 EENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK- 108 (145)
T ss_pred hcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-
Confidence 44555544 3457777777777777777777777641 244567778887766655 4456677777777
Q ss_pred CCCCCCcchHHHHHHHHhccCCh
Q 037178 194 TELKPDNFTFPCVIKACGGIADV 216 (311)
Q Consensus 194 ~~~~p~~~t~~~li~~~~~~g~~ 216 (311)
.+.+++..-|..+|+++.+....
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCC
Confidence 77777778888888877665333
No 305
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=83.77 E-value=13 Score=26.24 Aligned_cols=76 Identities=11% Similarity=0.018 Sum_probs=50.3
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...++|..+.+.+...+- ....+--+-+..+.+.|++++|+..=.....||...|-+| +-.+.|-.+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 356788888888887763 4455555666678888999988555555556888888655 344677777777777777
No 306
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=83.31 E-value=13 Score=26.13 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
...++|..+.+.+. ..+- -...+--+-+..+.+.|++++|+..=.....||...|-+|-.. +.|..+++...+.++
T Consensus 20 HcH~EA~tIa~wL~-~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLE-QEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHH-HTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 35677888888877 5442 3444444456667778888888444444456788888777654 777777777777777
Q ss_pred hh
Q 037178 191 SS 192 (311)
Q Consensus 191 ~~ 192 (311)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 55
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.21 E-value=9.1 Score=30.90 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=53.5
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--CCCchhhHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--QFSNDFIINTRLIT 141 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g~~~~~~~~~~ll~ 141 (311)
|.+..|+.+.+.+ ...+|+.+.+.-.+ .+.|..+-..+++.+|-.|++++|..-++..- .. ...+...+|..+|.
T Consensus 3 Tl~~t~seLL~~~-sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a-~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDN-SLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA-TLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhc-cHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh-hcCcccchHHHHHHHHHH
Confidence 3456677778888 88888888777666 66666777888888888888888877666554 32 23344566666665
Q ss_pred HH
Q 037178 142 MY 143 (311)
Q Consensus 142 ~~ 143 (311)
+-
T Consensus 81 ~e 82 (273)
T COG4455 81 CE 82 (273)
T ss_pred HH
Confidence 43
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.83 E-value=3.3 Score=21.67 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
|..+...+.+.|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.54 E-value=2.2 Score=22.58 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=20.7
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccCCC
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHNAD 95 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~ 95 (311)
+|..+-.++...| ++++|+..|++..++.|
T Consensus 3 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLG-DYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHCc
Confidence 4667777777788 88888888877766333
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.91 E-value=36 Score=29.42 Aligned_cols=60 Identities=7% Similarity=-0.120 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 233 GDVFVSNALIAMYGKCAFVEEMVKLFEVMPER-------NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
....+|..+...+.+.|+++.|...+..+.+. .....-.-.+.+-..|+.++|...+++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567777778888888888888887777652 2344444566667778888888877777
No 311
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.83 E-value=31 Score=28.57 Aligned_cols=77 Identities=8% Similarity=-0.057 Sum_probs=46.8
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCC---ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NAD---LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
.|+.- ..-.+.| ++++|.+.|+.+.. .+- ...+...++.++-+.++.+.|....++.....+-.||. -|-..|
T Consensus 37 LY~~g-~~~L~~g-n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 37 LYNEG-LTELQKG-NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHH-HHHHhcC-CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 34443 3445777 88888888888877 222 23445556667777888888888888777344434432 333344
Q ss_pred HHHH
Q 037178 141 TMYS 144 (311)
Q Consensus 141 ~~~~ 144 (311)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4444
No 312
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=80.56 E-value=18 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
-|..++.-|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888887754
No 313
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.96 E-value=15 Score=24.79 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHH
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.++++.+. +..-.|...+.++-..|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 4566777777773 333344444443346688888888888888 888888888888888887666544
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.36 E-value=36 Score=28.53 Aligned_cols=97 Identities=10% Similarity=-0.113 Sum_probs=48.6
Q ss_pred CCCCCcccHHHHHHHHH-hcCCCHHHHHHHHHhhccCCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc---C
Q 037178 58 NASTQGLHFLQEITTLC-EESKSLNKALSLLQENLHNADL-----KEATGVLLQACGHEKDIEIGKRVHELVSAST---Q 128 (311)
Q Consensus 58 ~~~~~~~~~~~li~~~~-~~g~~~~~a~~~~~~m~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---g 128 (311)
...||+..-|.--.+-+ +.. .+++|++-|++..+..+. -.....++....+.|++++....+.++. .. .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~-~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL-TYIkSA 98 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKED-EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL-TYIKSA 98 (440)
T ss_pred CCCCCcchHhhhhcccccccc-CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHH
Confidence 34555554333322222 334 677777777776662222 2234456666677777777666666654 21 0
Q ss_pred --CCchhhHHHHHHHHHHhcCChhHHHHHH
Q 037178 129 --FSNDFIINTRLITMYSLCGFPLDSRRVF 156 (311)
Q Consensus 129 --~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 156 (311)
-..+....|++++.-....+.+--..++
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FY 128 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFY 128 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1123344555665555554444433333
No 315
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.04 E-value=4.7 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=16.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhC
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
+..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666544
No 316
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.32 E-value=32 Score=27.25 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC------------------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPE------------------RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~------------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++..|-+..++.+.+++++.|.+ +.-..-|.....+.+.|..|.|+.++++=
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 566667777777777777777653 11245677778888888888888888654
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.66 E-value=74 Score=31.16 Aligned_cols=174 Identities=9% Similarity=0.046 Sum_probs=112.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcc----cCCChhHHHHHHHHHHhhcC-CCchhhHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACG----HEKDIEIGKRVHELVSASTQ-FSNDFIINTRL 139 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~g-~~~~~~~~~~l 139 (311)
....-|....+.. .++-|+.+-+.-. .|..+...+.+.|+ +.|++++|..-|-+-. | ++|.. +
T Consensus 336 ~le~kL~iL~kK~-ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI---~~le~s~-----V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKN-LYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI---GFLEPSE-----V 403 (933)
T ss_pred cHHHHHHHHHHhh-hHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc---ccCChHH-----H
Confidence 4556777888888 8888888876644 46666666655544 6899999988877655 3 23322 3
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV 216 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 216 (311)
|.-|.......+-...++.+.+. +...-+.|+.+|.+.++.++-.+..+.-.. |.. ..-....+..|.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChH
Confidence 44444444444444445554432 445567899999999999888777655432 211 12356677778888877
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
++|..+-... ..+..+...+++ ..|++++|.+.+..++
T Consensus 480 ~~a~~LA~k~-----~~he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKF-----KKHEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHh-----ccCHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 7777654432 224444455544 5688999999999887
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.96 E-value=24 Score=28.10 Aligned_cols=41 Identities=15% Similarity=-0.029 Sum_probs=19.2
Q ss_pred CChhhHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178 214 ADVGFGSGVHGMAAKM---GLIGDVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 254 (311)
.+.+++..++.+..+. +-.+|...+.+|...|.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444322 1234455555555555555555544
No 319
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.94 E-value=39 Score=29.63 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHH-------HHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC---cc
Q 037178 134 IINTRLITMYSLCGFPLDSRRV-------FDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD---NF 201 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l-------~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~ 201 (311)
.++..+..+.++.|.+++++.. +.+..+. -..+|-.+..++-+--++.+++.+-+.-..-.|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3555566666666666665432 1111111 1245666666766666677777665554332344442 23
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChh-h
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGL-----IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-------RNLV-S 268 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~-~ 268 (311)
.-.++-.++...+.++++.+.|+...+--. -....+|-.|-..|.+..++++|.-...+..+ .|.. -
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 455677788888899999998887665321 22457889999999999999987765554432 3332 1
Q ss_pred H-----HHHHHHHHhCCCcchHHHHHHhh
Q 037178 269 W-----NSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 269 y-----~~li~~~~~~g~~~~a~~l~~~m 292 (311)
| -.|..++-..|+..+|.+.-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 2 23556778889998888888776
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.85 E-value=23 Score=33.08 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=59.3
Q ss_pred hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 176 KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
+.|+.+.|.++-.+.. +..-|..|-++..+.|++..|.+.+.+..+. ..|+-.|...|+.+...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHH
Confidence 4456666665544432 3455777777777777777777777655433 35555666666655444
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 256 KLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 256 ~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+-...++. --.|...-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~--g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQ--GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhh--cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 443333321 12344556778888998888887654
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.74 E-value=81 Score=31.10 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=106.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc------CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH------NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
.|+++=.......++++.|.++-+.... ..+....+..+..+..-.|+.++|..+..+.. +..-..|.+.+..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~-~~a~~~~~~~l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE-QMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH-HHHHHcccHHHHH
Confidence 4666655444443389999998887776 33345556667777777899999988887776 4433444444432
Q ss_pred HH-----HHHHhcCCh--hHHHHHHHhcC-----CC-----ChHHHHHHHHHHHhCC-ChhhHHHHHHHhhhcCCCCCCc
Q 037178 139 LI-----TMYSLCGFP--LDSRRVFDSLK-----TR-----NLFQWNALVSGFTKNE-LYTDVLSIFVELSSDTELKPDN 200 (311)
Q Consensus 139 ll-----~~~~~~g~~--~~A~~l~~~m~-----~~-----~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~ 200 (311)
+. ..+-..|+. ++.+..|.... +. -...+..+..++.+.. .-.++..-++--.. ....|-.
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~ 616 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLL 616 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh-cccchhH
Confidence 22 224455633 33334444332 11 2234555666665521 11111111211111 1122211
Q ss_pred c--hHHHHHHHHhccCChhhHHHHHHHHHHhCCCC----cHHHHHHHH--HHHHhcCCHHHHHHHHhhCCC
Q 037178 201 F--TFPCVIKACGGIADVGFGSGVHGMAAKMGLIG----DVFVSNALI--AMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 201 ~--t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~ 263 (311)
. .+..++......|+.++|...++++......+ +...-...+ ......|+.+++.....+-..
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 2 22367778888999999999888887654333 222222222 223456787777777766443
No 322
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.40 E-value=11 Score=29.65 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=23.7
Q ss_pred cCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhc
Q 037178 109 HEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 109 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m 159 (311)
..++.+......+.+.+.....|+..+|..++.++...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333443333333333322334455555555555555555555555554443
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.93 E-value=23 Score=28.16 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC-------CCChHHHHHHHHHHHhCCChhhHH
Q 037178 114 EIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK-------TRNLFQWNALVSGFTKNELYTDVL 184 (311)
Q Consensus 114 ~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~-------~~~~~~y~~li~~~~~~g~~~~a~ 184 (311)
+.|.+.|-++. ..+.--+....-+|...|. ..+.+++..++.+.. +.|...+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666665 5554445555555555555 455666666665532 346677777777777777777664
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.74 E-value=7.5 Score=20.30 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+|..+...|...|++++|.+.|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555555555555544
No 325
>PRK09687 putative lyase; Provisional
Probab=74.54 E-value=52 Score=27.84 Aligned_cols=218 Identities=8% Similarity=-0.085 Sum_probs=132.3
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCCh----hHHHHHHHHHHhhcCCCchh
Q 037178 58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDI----EIGKRVHELVSASTQFSNDF 133 (311)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~g~~~~~ 133 (311)
+..+|.......+.++...| .. ++...+..+.. .+|...-...+.+++..|+. +++...+..+. .. .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~-~~-~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~-~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRG-GQ-DVFRLAIELCS-SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA-LE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcC-cc-hHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH-hc--CCCH
Confidence 34566666677777777777 43 33333333332 24556666666777777763 45666666553 22 4566
Q ss_pred hHHHHHHHHHHhcCC-----hhHHHHHHHh-cCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH
Q 037178 134 IINTRLITMYSLCGF-----PLDSRRVFDS-LKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI 207 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~-----~~~A~~l~~~-m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li 207 (311)
.+-...+.+++..+. ...+...+.. +..++..+--..+.++.+.|+ .++...+..+.. .+|...-...+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~ 180 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHH
Confidence 666666666666542 1233444433 345566677777888877776 456666666654 24555666666
Q ss_pred HHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHH
Q 037178 208 KACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 208 ~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~ 286 (311)
.++++.+ +-+.+...+..+.. .++..+-...+.++++.|+..-...+.+.+..++ ..-..+.++...|.. +|.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~ 254 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLL 254 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHH
Confidence 6666653 23455555555553 4577788888888888888554444444444444 344677888888875 677
Q ss_pred HHHHhh
Q 037178 287 DLLIKM 292 (311)
Q Consensus 287 ~l~~~m 292 (311)
..+.++
T Consensus 255 p~L~~l 260 (280)
T PRK09687 255 PVLDTL 260 (280)
T ss_pred HHHHHH
Confidence 777777
No 326
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=74.26 E-value=94 Score=31.43 Aligned_cols=136 Identities=11% Similarity=0.055 Sum_probs=68.6
Q ss_pred hhhhcCCCCCccc------HHHHHHHHHhcCCCHHHHHHHHHhhcc-----CCCChhhHHHHHHhcc-cCCChhHHHHHH
Q 037178 53 SAKTNNASTQGLH------FLQEITTLCEESKSLNKALSLLQENLH-----NADLKEATGVLLQACG-HEKDIEIGKRVH 120 (311)
Q Consensus 53 ~~~~~~~~~~~~~------~~~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~~ll~~~~-~~~~~~~a~~~~ 120 (311)
+.--+||+.|..| --+.|+.+...+ ++.+|+.+.++=+- ..-|+..|-.=+..+. +.++.+..-.++
T Consensus 678 ~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~-~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFl 756 (928)
T PF04762_consen 678 SVVLQMPRGNLETIYPRALVLAGIRKLLDAK-DYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFL 756 (928)
T ss_pred eEEEEcCCCchhhhccHhHHHHHHHHHHhhc-cHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4456788777765 345667778889 99999998887553 3334444433333333 223333333333
Q ss_pred HHHHhhcCCCchhhHHHHH------------HHHHHhcCChhHHHHHH-HhcC-CCCh-HHHHHHHHHHHhCC--ChhhH
Q 037178 121 ELVSASTQFSNDFIINTRL------------ITMYSLCGFPLDSRRVF-DSLK-TRNL-FQWNALVSGFTKNE--LYTDV 183 (311)
Q Consensus 121 ~~m~~~~g~~~~~~~~~~l------------l~~~~~~g~~~~A~~l~-~~m~-~~~~-~~y~~li~~~~~~g--~~~~a 183 (311)
..+. +.++.- ..|... .......++++.....+ +.|. ..+. .-...++.+|++.+ ++++|
T Consensus 757 s~L~-~EDvt~--tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~a 833 (928)
T PF04762_consen 757 SSLR-NEDVTK--TMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEA 833 (928)
T ss_pred Hhcc-cccccc--cccccccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHH
Confidence 3333 221111 111100 01111223333333332 3343 2232 33456777777777 77777
Q ss_pred HHHHHHhhh
Q 037178 184 LSIFVELSS 192 (311)
Q Consensus 184 ~~~~~~m~~ 192 (311)
+.+..++++
T Consensus 834 L~~I~~l~~ 842 (928)
T PF04762_consen 834 LQLIKELRE 842 (928)
T ss_pred HHHHHHHHh
Confidence 777777776
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.70 E-value=86 Score=29.98 Aligned_cols=218 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc---
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC--- 146 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~--- 146 (311)
...+.-.| .++.|++.+-.......|...+.+.+..++-.+-.+....=+-... ..+..| .-+..||..|++.
T Consensus 265 f~~LlLtg-qFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~-~~~~~~--ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTG-QFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVD-PGDPPP--LNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT--HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHh-hHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeec-CCCCCC--cCHHHHHHHHHHHHhc
Q ss_pred CChhHHHHHHHhcCCCCh-----HHHHHHHHHHHhCCChhhHHHHHHHhhhcCC---------------CCCCcchHHHH
Q 037178 147 GFPLDSRRVFDSLKTRNL-----FQWNALVSGFTKNELYTDVLSIFVELSSDTE---------------LKPDNFTFPCV 206 (311)
Q Consensus 147 g~~~~A~~l~~~m~~~~~-----~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------~~p~~~t~~~l 206 (311)
.+..+|.+.|--+..... .....+-......+ +-..++.++.. .| +..+......+
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletr---ef~~LLG~i~~-dG~r~~G~i~~~~~Li~~~~~~~~~~~i 416 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETR---EFDLLLGDINP-DGSRTPGLIERRLSLIKFDDDEDFLREI 416 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH-----HHHHHEEE-T-TS-EEE-HHHHTGGGGT-SSSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccC---CHHHHCCCCCC-CCccccceeeccccccCCCCcHHHHHHH
Q ss_pred HHHHh----ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC-----------HHHHHHHHhhCCC--------
Q 037178 207 IKACG----GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF-----------VEEMVKLFEVMPE-------- 263 (311)
Q Consensus 207 i~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~-------- 263 (311)
+...+ ..|++++|..+|....+.. ..=...-..|-+....... ...|.++.+....
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~~~d-~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAEEYD-KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT-HH-HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Q ss_pred --CChhhHHHHHHH-----HHhCCCcchHHHHHHhhhhccCCCCC
Q 037178 264 --RNLVSWNSIICG-----FSENGFSCESFDLLIKMMGCEEGFIP 301 (311)
Q Consensus 264 --~~~~~y~~li~~-----~~~~g~~~~a~~l~~~m~~~~~g~~P 301 (311)
.+..|+..|+.. +...|++++|++.++++ ++-|
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L-----~liP 535 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL-----DLIP 535 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT-----T-S-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCC
No 328
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=48 Score=28.11 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=56.5
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCCCcc-------hHHHHHHHHhccCChhhHHHHHHHH----HHhCCCCcHHHHHHHH
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKPDNF-------TFPCVIKACGGIADVGFGSGVHGMA----AKMGLIGDVFVSNALI 242 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------t~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~~~~li 242 (311)
.++.++.++|+.++.+... .|+.-|.. |...+.+-|...|+.....++.... .+---+-.+.+..+|+
T Consensus 13 ~v~~~~~~~ai~~yk~iL~-kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILG-KGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred hhhhhhHHHHHHHHHHHhc-CCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3455666666666666665 55555443 3344555556666555544443322 1111122344445555
Q ss_pred HHHHhc-CCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 243 AMYGKC-AFVEEMVKLFEVMPE-----R----NLVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 243 ~~~~~~-g~~~~A~~~~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
+.+-.. ..++.-.++.....+ . ....-..+|..+.+.|++.+|..+..
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 544322 334444444444432 1 11122346666777777777666443
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.02 E-value=40 Score=25.44 Aligned_cols=47 Identities=9% Similarity=-0.047 Sum_probs=25.9
Q ss_pred hcCCCHHHHHHHHHhhccCCC---ChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 75 EESKSLNKALSLLQENLHNAD---LKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
..+ +++++..+++.|.-..| ...++..++.. ..|++.+|.++++...
T Consensus 22 ~~~-d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i--~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSA-DPYDAQAMLDALRVLRPNLKELDMFDGWLLI--ARGNYDEAARILRELL 71 (153)
T ss_pred hcC-CHHHHHHHHHHHHHhCCCccccchhHHHHHH--HcCCHHHHHHHHHhhh
Confidence 355 66666666666655222 23344444333 5666666666666665
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.50 E-value=26 Score=27.97 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCCCc------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKPDN------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
+.++|++++|..-|.+... ..|.. +.|..-..++.+.+.++.|..--....+.+ +......---..+|-+
T Consensus 105 ~F~ngdyeeA~skY~~Ale---~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE---SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHH---hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3455666666666555543 11211 223333344555555555555444444433 1111111122335666
Q ss_pred cCCHHHHHHHHhhCCCCC
Q 037178 248 CAFVEEMVKLFEVMPERN 265 (311)
Q Consensus 248 ~g~~~~A~~~~~~m~~~~ 265 (311)
..++++|+.-|.++.+.|
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 666666666666666533
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.86 E-value=1.1e+02 Score=30.15 Aligned_cols=217 Identities=11% Similarity=-0.022 Sum_probs=119.8
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc---CCCChhhHH-----------------HHHHh--cccCCChhHHHHHHHHHHhhc
Q 037178 70 ITTLCEESKSLNKALSLLQENLH---NADLKEATG-----------------VLLQA--CGHEKDIEIGKRVHELVSAST 127 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~---~~~~~~~~~-----------------~ll~~--~~~~~~~~~a~~~~~~m~~~~ 127 (311)
|.-...+| +++.|-+++++-.. ......+.. .++.+ .....++.+|..+..+.. ..
T Consensus 367 I~hAlaA~-d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~-~~ 444 (894)
T COG2909 367 IDHALAAG-DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLE-HF 444 (894)
T ss_pred HHHHHhCC-CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHH-HH
Confidence 44455677 78888887777632 111111111 12222 234577888888888776 33
Q ss_pred CCCchhh-------HHHHHHHHHH-hcCChhHHHHHHHhcC--------CCChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 128 QFSNDFI-------INTRLITMYS-LCGFPLDSRRVFDSLK--------TRNLFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 128 g~~~~~~-------~~~~ll~~~~-~~g~~~~A~~l~~~m~--------~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
--.|+.. .+++|-.... ..|++++|.++-+... ...++.+.++..+..-.|++++|..+.++-.
T Consensus 445 l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 445 LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 2232222 3443333322 3478888887766543 2367888899999999999999999887766
Q ss_pred hcCCCCCCcchHHHHH-----HHHhccCChhhH--HHHHHHHHHh---CC---CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037178 192 SDTELKPDNFTFPCVI-----KACGGIADVGFG--SGVHGMAAKM---GL---IGDVFVSNALIAMYGKCAFVEEMVKLF 258 (311)
Q Consensus 192 ~~~~~~p~~~t~~~li-----~~~~~~g~~~~a--~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (311)
+ ..-.-+.+.|.... ..+...|+...+ ...+...... .. .+-.-++..+..++.+ ++.+..-.
T Consensus 525 ~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ea 600 (894)
T COG2909 525 Q-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEA 600 (894)
T ss_pred H-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHh
Confidence 5 32333444333322 234555633322 2233322221 11 1223445555555555 44443333
Q ss_pred hhCCC------CCh--h--hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 259 EVMPE------RNL--V--SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 259 ~~m~~------~~~--~--~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..-.+ +.. . .+..|+..+...|+.++|...++++
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 32221 211 1 2346788889999999999999998
No 332
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.73 E-value=15 Score=29.01 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=21.0
Q ss_pred CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 195 ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 195 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
...|+..+|..++.++...|+.++|.++..++...
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566666666666666666666666666555443
No 333
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.59 E-value=79 Score=28.23 Aligned_cols=154 Identities=12% Similarity=0.024 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCC------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC---------CCC
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKT------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDT---------ELK 197 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~~ 197 (311)
...+.-+...|..+|+++.|.+.|.+.++ ..+..|-.+|..-...|+|..+.....+..+ . .+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s-t~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES-TPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh-CchhhhhHHHhcC
Confidence 34677788899999999999999999652 3556788888888888999988888777765 2 122
Q ss_pred CCcchHHHHHHHHhccCChhhHHHHHHHHHHh-C-----CCC-cHHHHHHHHHHHHhcCCHHHHHH-----HHhhCCCCC
Q 037178 198 PDNFTFPCVIKACGGIADVGFGSGVHGMAAKM-G-----LIG-DVFVSNALIAMYGKCAFVEEMVK-----LFEVMPERN 265 (311)
Q Consensus 198 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----~~~-~~~~~~~li~~~~~~g~~~~A~~-----~~~~m~~~~ 265 (311)
+-...+..+..-+ .++++.|.+.|-..... + +.| |+.+|. .+.+++-.++-+--.. .|+...+-.
T Consensus 229 ~kl~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel~ 305 (466)
T KOG0686|consen 229 AKLKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLELE 305 (466)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhcC
Confidence 2222333333322 23555555444222211 1 223 344443 3344443333332222 222333344
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 266 LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 266 ~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+..+..+-.-| .+++...+++++++
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~ 330 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREI 330 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHh
Confidence 44555444444 35677888888887
No 334
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=70.59 E-value=47 Score=25.64 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 238 SNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+..+++.+...|++-+|.+..+.....+......++.+-.+.++...-..+++-.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566667777788888888877766555555566677776766666555555444
No 335
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.58 E-value=16 Score=21.44 Aligned_cols=33 Identities=3% Similarity=-0.123 Sum_probs=22.8
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.+.|-++++..++++|.+.|+-.+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666677777777777777777777766654
No 336
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.23 E-value=15 Score=25.96 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 268 SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 268 ~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
-|..|+.-|...|..++|.+++.+.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHH
Confidence 4888999999999999999999998
No 337
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=69.98 E-value=97 Score=29.02 Aligned_cols=29 Identities=7% Similarity=-0.152 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
+..+|+..+..-.+.|+.+.+.-+|++..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercl 324 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCL 324 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHH
Confidence 34455555555555566666655555554
No 338
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.45 E-value=84 Score=28.06 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHhhCCCCC
Q 037178 246 GKCAFVEEMVKLFEVMPERN 265 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~~ 265 (311)
++.|+.+-+.-+++.-.+++
T Consensus 210 ~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 210 IENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred HHcCCHHHHHHHHHCCcCcc
Confidence 34455544444444333333
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.80 E-value=16 Score=30.91 Aligned_cols=75 Identities=8% Similarity=0.041 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcc--CCCChhhHHHHHHhccc------CCC-----hhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 81 NKALSLLQENLH--NADLKEATGVLLQACGH------EKD-----IEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 81 ~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~------~~~-----~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
+.-.+..++... ......++.+.+++++. .|. -.+|.++|..+.+..|- ..+-+-++.++....
T Consensus 104 ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk---~v~~~~~ie~lwpe~ 180 (361)
T COG3947 104 EKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK---EVTSWEAIEALWPEK 180 (361)
T ss_pred HHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC---cccHhHHHHHHcccc
Confidence 333334444333 33345566666666652 121 25788899888844442 233345777777777
Q ss_pred ChhHHHHHHHh
Q 037178 148 FPLDSRRVFDS 158 (311)
Q Consensus 148 ~~~~A~~l~~~ 158 (311)
+..+|...|..
T Consensus 181 D~kka~s~lhT 191 (361)
T COG3947 181 DEKKASSLLHT 191 (361)
T ss_pred chhhHHHHHHH
Confidence 77777666543
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.68 E-value=87 Score=27.95 Aligned_cols=213 Identities=11% Similarity=-0.092 Sum_probs=113.7
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHHHHhcC
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITMYSLCG 147 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~~~~~g 147 (311)
+...++.| +.+-+..+++.-...........+.+..++..|+.+-+ +.+. +.|..++.. ...+.+...++.|
T Consensus 6 L~~A~~~g-~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll-~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFG-ELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLM-KHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHHHhC-CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHH-hCCCCccccCCCcccHHHHHHHCC
Confidence 44455677 78777666654322111112234455666677777644 4444 555555432 1234566777889
Q ss_pred ChhHHHHHHHhcCCCChH---HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--HHHHHHHHhccCChhhHHHH
Q 037178 148 FPLDSRRVFDSLKTRNLF---QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--FPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~ 222 (311)
+.+.+..+++.-...+.. .-.+.+...+..|+.+-+. .+.+ .|..|+... -.+.+...+..|+.+-+..
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~----~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~- 153 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK----LLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIEL- 153 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHH----HHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHH-
Confidence 999988888765422111 1123344445667664443 3344 565555432 1244555566777655444
Q ss_pred HHHHHHhCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh---HHHHHHHHHhCCCcchHHHHHHhhhhcc
Q 037178 223 HGMAAKMGLIGDV---FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVS---WNSIICGFSENGFSCESFDLLIKMMGCE 296 (311)
Q Consensus 223 ~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---y~~li~~~~~~g~~~~a~~l~~~m~~~~ 296 (311)
+.+.|..++. .-. +.+..-+..|+.+-+..+++.-.+++... ..+++..-+..|+. ++.+-+ .+
T Consensus 154 ---Ll~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~L--l~ 223 (413)
T PHA02875 154 ---LIDHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLF--IK 223 (413)
T ss_pred ---HHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHH--HH
Confidence 4455544332 222 23334456788887777777655554432 23455544556664 344555 56
Q ss_pred CCCCCCce
Q 037178 297 EGFIPDVI 304 (311)
Q Consensus 297 ~g~~P~~~ 304 (311)
.|..||..
T Consensus 224 ~gad~n~~ 231 (413)
T PHA02875 224 RGADCNIM 231 (413)
T ss_pred CCcCcchH
Confidence 78777753
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.43 E-value=78 Score=27.31 Aligned_cols=63 Identities=8% Similarity=-0.097 Sum_probs=38.5
Q ss_pred cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG---DVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..++..+.+.+.+.|.++.|...+..+.+.+... +..+.-.-.......|+-++|...+++..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3466777777777777777777777766543211 23344444555666677777776665444
No 342
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=67.87 E-value=71 Score=26.67 Aligned_cols=157 Identities=13% Similarity=0.007 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCCh-----hHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDI-----EIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
.-.+.+|+.+.+.+ ....|..+.+++...+-=......++......... ......+....+-.. . ...|-.
T Consensus 83 l~L~~iL~~lL~~~-~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~-~--f~~~l~ 158 (258)
T PF07064_consen 83 LFLHHILRHLLRRN-LDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQ-E--FPEYLE 158 (258)
T ss_pred echHHHHHHHHhcC-CcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH-c--CcchHH
Confidence 34688999999999 89999999988887322334444444432221111 111112221110000 0 112333
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-----CcchHHHHHHHHhcc
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-----DNFTFPCVIKACGGI 213 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~t~~~li~~~~~~ 213 (311)
++..|.|.=+...-..+|+....|- .++.-|.+.|+.+.|-.++--+....+... +...-.-++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 4444444444444445555553221 355556666666666655544443111212 222333455555566
Q ss_pred CChhhHHHHHHHHHHh
Q 037178 214 ADVGFGSGVHGMAAKM 229 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~ 229 (311)
|+++-+.++.+-+..-
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 6666666666655543
No 343
>PRK10941 hypothetical protein; Provisional
Probab=67.86 E-value=60 Score=27.33 Aligned_cols=78 Identities=9% Similarity=-0.117 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
.+.+-.+|.+.+ +++.|+++.+.+.. .+.|+.-+.--.-.+.+.|....|..-++...+...-.|+.......+...-
T Consensus 184 l~nLK~~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 566667777888 88888888888888 5555555666666677888888888877777634444555555554444443
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.74 E-value=1.1e+02 Score=28.81 Aligned_cols=175 Identities=12% Similarity=0.039 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHhhcCC-CchhhHHHHHHHH-HHhcCChhHHHHHHHhcCC--------CChHHHHHHHHHHHhCC----
Q 037178 113 IEIGKRVHELVSASTQF-SNDFIINTRLITM-YSLCGFPLDSRRVFDSLKT--------RNLFQWNALVSGFTKNE---- 178 (311)
Q Consensus 113 ~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~-~~~~g~~~~A~~l~~~m~~--------~~~~~y~~li~~~~~~g---- 178 (311)
...+.+.++... +.|. ..-...-.....+ +....+.+.|...|+...+ -+.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a-~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAA-KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHH-hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 456788888877 5552 2222333334444 5677889999999887643 13345666777777654
Q ss_pred -ChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc-cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH--hcCCHHHH
Q 037178 179 -LYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG-IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG--KCAFVEEM 254 (311)
Q Consensus 179 -~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A 254 (311)
+.+.|+.++...-+ .|. |+...+...+.-... ..+..+|.++|...-+.|.. +...+-+++.... ...+.+.|
T Consensus 307 ~d~~~A~~~~~~aA~-~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAE-LGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccHHHHHHHHHHHHh-cCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 55668888888766 543 444433333332222 34678899999998888843 2222222222222 33578888
Q ss_pred HHHHhhCCCCCh-hhHHHHH--HHHHhCCCcchHHHHHHhh
Q 037178 255 VKLFEVMPERNL-VSWNSII--CGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 255 ~~~~~~m~~~~~-~~y~~li--~~~~~~g~~~~a~~l~~~m 292 (311)
..++.+.-+.+. .+.-.+. ..+.. ++.+.+.-.+..+
T Consensus 384 ~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 384 FAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 888888777653 2222222 22222 5666666555555
No 345
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.68 E-value=61 Score=26.72 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=15.7
Q ss_pred CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCC
Q 037178 264 RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIP 301 (311)
Q Consensus 264 ~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P 301 (311)
|.+..-..++..|. .+++++|.+.+.++ .+.|+.|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~l--w~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAEL--WKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHH--HHcCCCH
Confidence 44443333433332 23355555555555 4555544
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.44 E-value=18 Score=30.61 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
+.+..-+.|.++|.+.+|..+-++... -+...|-.++..+...|+--+|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455667777777777777776653 255667777777777777666666666664
No 347
>PRK09687 putative lyase; Provisional
Probab=67.34 E-value=77 Score=26.83 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=119.9
Q ss_pred CcccHHHHHHHHHhcCCCH----HHHHHHHHhhccCCCChhhHHHHHHhcccCCCh-----hHHHHHHHHHHhhcCCCch
Q 037178 62 QGLHFLQEITTLCEESKSL----NKALSLLQENLHNADLKEATGVLLQACGHEKDI-----EIGKRVHELVSASTQFSND 132 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~----~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~g~~~~ 132 (311)
|...=...+.++++-| .. ++++.++..+....++...-...+.+++..+.. ..+...+.... ..++
T Consensus 67 d~~vR~~A~~aLg~lg-~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~----~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLG-MAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA----FDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh----hCCC
Confidence 3333444455556666 42 456666665533346666666666666655422 12233332222 2346
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCC-ChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNE-LYTDVLSIFVELSSDTELKPDNFTFPCVIKACG 211 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~ 211 (311)
..+--..+.++++.|+-+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.++.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHH
Confidence 6666778888888887555555555566677766667777777653 24566666666654 467788888999999
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHH
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGF 276 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y~~li~~~ 276 (311)
+.|+. .+...+-...+.+. .....+.++++.|.. +|...+..+.+ +|..+-...+.++
T Consensus 218 ~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 98884 55555555555442 234677888888885 67777777664 4554444444444
No 348
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.28 E-value=61 Score=26.41 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=9.7
Q ss_pred HHHHHHhcCChhHHHHHHHhcC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
++.++...|+.+.|..+++.+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC
Confidence 3344444444444444444443
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.23 E-value=7.7 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=10.1
Q ss_pred HHHHHhCCCcchHHHHHHhh
Q 037178 273 ICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 273 i~~~~~~g~~~~a~~l~~~m 292 (311)
..+|...|+.+.|.+++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 34455555555555555554
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.39 E-value=63 Score=25.69 Aligned_cols=88 Identities=6% Similarity=-0.050 Sum_probs=47.5
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCc--hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHH--HHHHHHHHHhCCC
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSN--DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQ--WNALVSGFTKNEL 179 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~--y~~li~~~~~~g~ 179 (311)
...+...+++++|..-++... ...-.- ...+--.|-......|.+++|+++++...+++-.. -..--+.+...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l-~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQAL-AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 344556677777776666654 211110 11112224445556677777777777666653322 3333445666677
Q ss_pred hhhHHHHHHHhhh
Q 037178 180 YTDVLSIFVELSS 192 (311)
Q Consensus 180 ~~~a~~~~~~m~~ 192 (311)
-++|..-|+.-.+
T Consensus 175 k~~Ar~ay~kAl~ 187 (207)
T COG2976 175 KQEARAAYEKALE 187 (207)
T ss_pred hHHHHHHHHHHHH
Confidence 7777766666655
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.78 E-value=27 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=24.3
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ 128 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g 128 (311)
+.|++......+++|-+.+|+..|.++++-++.+.|
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 667777777777777777777777777776653333
No 352
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.45 E-value=1.5e+02 Score=29.40 Aligned_cols=146 Identities=10% Similarity=0.123 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH-----HH
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK-----AC 210 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~-----~~ 210 (311)
+..-...|...+.+..|-+++.++.+ .+..+.--|....+.+ ++..|-.-+- ..+.|...+-..++. .+
T Consensus 392 l~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~~~~~~-~L~~~L~KKL-~~lt~~dk~q~~~Lv~WLlel~ 465 (911)
T KOG2034|consen 392 LLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLEINQER-ALRTFLDKKL-DRLTPEDKTQRDALVTWLLELY 465 (911)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHhcCCHH-HHHHHHHHHH-hhCChHHHHHHHHHHHHHHHHH
Confidence 33344556667788888888888743 3333444444444444 6655544444 455555444333222 11
Q ss_pred -hccCChh----hHHHHHH--------HHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 037178 211 -GGIADVG----FGSGVHG--------MAAKM-GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGF 276 (311)
Q Consensus 211 -~~~g~~~----~a~~~~~--------~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~ 276 (311)
.+.++.+ ++..-++ ++... ....+...+.+........|+.+++..+-.-|.+ |..++.-+
T Consensus 466 L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~ 540 (911)
T KOG2034|consen 466 LEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYW 540 (911)
T ss_pred HHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHH
Confidence 2333333 2222111 11111 1122333444455555667777777766665554 66777788
Q ss_pred HhCCCcchHHHHHHhh
Q 037178 277 SENGFSCESFDLLIKM 292 (311)
Q Consensus 277 ~~~g~~~~a~~l~~~m 292 (311)
++.+.+++|.+++..-
T Consensus 541 ~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 541 IQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888777543
No 353
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=64.57 E-value=77 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
||-|---+..+| +++.|.+.|+...+
T Consensus 102 fNyLG~Yl~~a~-~fdaa~eaFds~~E 127 (297)
T COG4785 102 FNYLGIYLTQAG-NFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHhcc-cchHHHHHhhhHhc
Confidence 444444444555 55555555555555
No 354
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.10 E-value=39 Score=29.81 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHhcccCCCh---hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC
Q 037178 101 GVLLQACGHEKDI---EIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 162 (311)
Q Consensus 101 ~~ll~~~~~~~~~---~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 162 (311)
..++..+...++. -+|..+++....+. +.+...--.|+..|...|-.+.|.+.|+.+.-+
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s--~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK 246 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS--PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK 246 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH
Confidence 3444444444443 45566666655222 334444445788888888888888888887743
No 355
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=63.72 E-value=85 Score=26.06 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 240 ALIAMYGKCAFVEEMVKLFEVMPE--RNL----VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+.+-|.+.|.+..|..=+++|.+ ++. ...-.|..+|-..|-.++|.+.-+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445667788888888888887775 222 24455677888888888877776666
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.97 E-value=48 Score=24.30 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 183 VLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 183 a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
..+.+..... ..+.|+....-.-+++|.+.+|+..|.++++-++.+ +.+...+|-.+++
T Consensus 68 vrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3334444444 666777777777777777777777777777765543 2333334555543
No 357
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.87 E-value=60 Score=23.66 Aligned_cols=43 Identities=5% Similarity=0.017 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 218 FGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
.+.++|..|...|+-- ....|......+.+.|++++|.+||+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777776543 356667777777777777777777753
No 358
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.47 E-value=39 Score=31.31 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
-..++.-|.+.+ ++++|..++..|..
T Consensus 411 ~~eL~~~yl~~~-qi~eAi~lL~smnW 436 (545)
T PF11768_consen 411 LVELISQYLRCD-QIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHhCCc
Confidence 457888999999 99999999999988
No 359
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.24 E-value=14 Score=18.89 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=11.0
Q ss_pred HHHhccCChhhHHHHHHHHHHh
Q 037178 208 KACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.++.+.|+.++|.+.++++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3444455555555555555443
No 360
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.17 E-value=18 Score=30.73 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=30.9
Q ss_pred CCCCCcch-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHH
Q 037178 195 ELKPDNFT-FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSN 239 (311)
Q Consensus 195 ~~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 239 (311)
.+.||..+ |+..|+...+.||+++|..++++.++.|+.--..++-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34455544 5678888888888888888888888888665444443
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.48 E-value=33 Score=22.72 Aligned_cols=19 Identities=16% Similarity=-0.099 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhcCChhHHH
Q 037178 135 INTRLITMYSLCGFPLDSR 153 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~ 153 (311)
+...|+.+|+.-|++++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.41 E-value=31 Score=22.83 Aligned_cols=44 Identities=14% Similarity=-0.101 Sum_probs=20.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHH
Q 037178 213 IADVGFGSGVHGMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~ 256 (311)
..+.++|...+....+.-..+. -.+...++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444332221 2444555555555555555544
No 363
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.66 E-value=23 Score=30.61 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=26.2
Q ss_pred HHHhccCChhhHHHHHHHHHHh---CCCCcHHHH--HHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 208 KACGGIADVGFGSGVHGMAAKM---GLIGDVFVS--NALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
...-+.++.++|.++++++.+. .-.|+.+.| +.....+...|++.++.+++++.+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3334444666666666655433 113333333 233344445555555555555443
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.65 E-value=17 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHh
Q 037178 167 WNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
|..+...+...|++++|...|++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444445555555544443
No 365
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.56 E-value=2.4e+02 Score=31.55 Aligned_cols=151 Identities=11% Similarity=-0.020 Sum_probs=88.5
Q ss_pred HHHHhcccCCChhHHHHHHHHHHh-hcCCCchhhHHHHHHHHHHhcCChhHHHHHHH-hcCCCChHHHHHHHHHHHhCCC
Q 037178 102 VLLQACGHEKDIEIGKRVHELVSA-STQFSNDFIINTRLITMYSLCGFPLDSRRVFD-SLKTRNLFQWNALVSGFTKNEL 179 (311)
Q Consensus 102 ~ll~~~~~~~~~~~a~~~~~~m~~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~-~m~~~~~~~y~~li~~~~~~g~ 179 (311)
++..+--+.+.+.+|...++.-.. +..-......|-.+...|+..++.|...-+.. +...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 344455566777777777776210 00112234455556668888888887777766 3444442 234455677899
Q ss_pred hhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHH
Q 037178 180 YTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKL 257 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 257 (311)
++.|...|+++.+ ..|+ ..+++-++......|.++...-..+-..... .+. ...++.=+.+-.+.++++.....
T Consensus 1465 ~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999865 5566 5677777776666777766665444433332 222 22333334444666666665555
Q ss_pred Hh
Q 037178 258 FE 259 (311)
Q Consensus 258 ~~ 259 (311)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 366
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.51 E-value=61 Score=27.58 Aligned_cols=109 Identities=7% Similarity=0.008 Sum_probs=50.9
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
++..+-+.+++.+..+.++.+. .+..-...+..+...|++.+|+++..+.+. .- . .-.-|.+ ++.+. .++++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-~l-~-~l~~~~c-~~~L~--~~L~e 175 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ-LL-E-ELKGYSC-VRHLS--SQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HH-H-hcccchH-HHHHh--HHHHH
Confidence 3444444444444444444442 333344455666677777777777776654 10 0 0011111 11000 12222
Q ss_pred HHHHHHHHHHh-----CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 219 GSGVHGMAAKM-----GLIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 219 a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
.......+.+. -...|...|..++.+|.-.|+...+.
T Consensus 176 ~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 22222222221 11456777777777777777665544
No 367
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.49 E-value=1e+02 Score=25.49 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=23.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178 203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS 238 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 238 (311)
+.-+..--+..+++.+|.++|+++.+..+..+..-|
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 333344446778889999999988877655444333
No 368
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.16 E-value=57 Score=31.14 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC------CChHHHHHHHHHHHhCCCh
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKT------RNLFQWNALVSGFTKNELY 180 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~------~~~~~y~~li~~~~~~g~~ 180 (311)
+|+.+|...|++-.+.++++.... .-+..||.-|..+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 344555555555555544444331 1223444445555555443
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.54 E-value=11 Score=23.57 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCcchHHHHHHhh
Q 037178 271 SIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 271 ~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+|.||...|++++|.+.++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4566777777777777766665
No 370
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.37 E-value=1.1e+02 Score=27.76 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
-..+|+-|...| +..+..+.++.+-.
T Consensus 348 ~~~IIqEYFlsg-Dt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 348 LTPIIQEYFLSG-DTPEVIRSLRDLNL 373 (645)
T ss_pred hHHHHHHHHhcC-ChHHHHHHHHHcCC
Confidence 356677777777 77776666665443
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.26 E-value=42 Score=27.72 Aligned_cols=53 Identities=15% Similarity=-0.032 Sum_probs=26.1
Q ss_pred HHHHHhccCChhhHHHHHHHHH----HhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037178 206 VIKACGGIADVGFGSGVHGMAA----KMGL-IGDVFVSNALIAMYGKCAFVEEMVKLF 258 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (311)
+..-|.+.|++++|.++++.+. +.|. .+...+...+..++.+.|+.++...+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3344555555555555555443 1232 234445555555555556655555443
No 372
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=57.19 E-value=21 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=9.1
Q ss_pred HHHHHhcCChhHHHHHHHhcC
Q 037178 140 ITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~ 160 (311)
+.-|...|+.++|...+.++.
T Consensus 9 l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHhC
Confidence 334444444444444444443
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.23 E-value=78 Score=29.10 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=20.2
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
...|+..|...+..|-+.+.+.+...+|.+|...++-.||..+|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~a 145 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYA 145 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhh
Confidence 333444444444444444444444444444443344444444443
No 374
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=56.14 E-value=60 Score=21.90 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
++|+.....|+..|..+|..+++.+.-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777888888888888888888777777777777777765
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.08 E-value=33 Score=20.12 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=25.8
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 108 GHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 108 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
.+.|-++++..+++.|. +.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~-~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQ-QAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHH-HcCcccCHHHHHHHHH
Confidence 46777788888888887 8888888877776664
No 376
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.81 E-value=1e+02 Score=25.16 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=28.4
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhc---CC--CChHHH--HHHHHHHHhCCChhhHHHHHHHhh
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSL---KT--RNLFQW--NALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m---~~--~~~~~y--~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
.++..-+|.|+--|.-...+.+|-+.|..= .. .|..++ ..-|....+.|+.++|++...+..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344444444444444444444444444331 12 122222 234445566666666666665554
No 377
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=54.72 E-value=61 Score=21.73 Aligned_cols=63 Identities=8% Similarity=0.047 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchH
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCES 285 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a 285 (311)
...+++.+.+.|+- +.... -.......+.+.|.++++.+..++..+|.+...++-..|..+-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~---e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMI---EEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHH---HHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 44577777777743 22222 22223556788899999998899999999999888888765544
No 378
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.51 E-value=1.1e+02 Score=24.29 Aligned_cols=100 Identities=8% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC-
Q 037178 152 SRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG- 230 (311)
Q Consensus 152 A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g- 230 (311)
|+.+.++-+++-.+.|.....+-++.-..+++.+.|-- .+=-+++-.|.+.-++.+++++++.|-+..
T Consensus 95 a~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG-----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i 163 (233)
T PF14669_consen 95 AEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG-----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQI 163 (233)
T ss_pred HHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455556666666666666555554443311 112256667788888889998888887652
Q ss_pred -------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 231 -------------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 231 -------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..+-....|.....+.+.|.+|.|..++++-.
T Consensus 164 ~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 164 HFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred hhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 24456788999999999999999999998543
No 379
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.47 E-value=76 Score=29.47 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCC--ChH---HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKTR--NLF---QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~~--~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
-|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..--++....++.+.. .=..|..-.-...+.-|..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg-sF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG-SFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh-hccCCCcCccHHHHHHHHH
Confidence 3666777777777777777776521 222 233344444444434444444444432 1122222111111111111
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLV 267 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 267 (311)
-=.+-|+++ ...+.|.+++++|+.+--++..+|..
T Consensus 492 -~V~~~aRRf-------------------FhhLLR~~rfekAFlLAvdi~~~DLF 526 (545)
T PF11768_consen 492 -PVSDLARRF-------------------FHHLLRYQRFEKAFLLAVDIGDRDLF 526 (545)
T ss_pred -HHHHHHHHH-------------------HHHHHHhhHHHHHHHHHHhccchHHH
Confidence 111122222 23345667888888888887776653
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.30 E-value=19 Score=22.47 Aligned_cols=23 Identities=9% Similarity=-0.174 Sum_probs=11.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
.+|.++...|++++|.++.+.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555554443
No 381
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.25 E-value=1.2e+02 Score=26.35 Aligned_cols=83 Identities=12% Similarity=-0.022 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-----CCCChhhHH--HHHHhcccCCChhHHHHHHHHHHhh-----cCCCchhh-
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-----NADLKEATG--VLLQACGHEKDIEIGKRVHELVSAS-----TQFSNDFI- 134 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~-----~g~~~~~~- 134 (311)
.++...-+-+ +.++|++.++++.+ -.|+...|. ...+.+...||..++.+++++.. + .+++++++
T Consensus 80 i~l~~~~~~~-D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~-~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 80 ILLVVSEQIS-DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK-SMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhcccCCChhhhh
Confidence 3444444556 88999999999887 556666553 44556667899999999988887 5 56777554
Q ss_pred HHHHHHHHHHhc-CChhHH
Q 037178 135 INTRLITMYSLC-GFPLDS 152 (311)
Q Consensus 135 ~~~~ll~~~~~~-g~~~~A 152 (311)
.|..+-+-|.+. |+++..
T Consensus 158 ~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hHHHHHHHHHHHHHhHHHH
Confidence 455555555544 555544
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.04 E-value=20 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred ChHH-HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHH
Q 037178 163 NLFQ-WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCV 206 (311)
Q Consensus 163 ~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~l 206 (311)
|..+ ||..|..-.+.|+.++|+.+++|.++ .|+.--..||-.-
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~-LG~~~Ar~tFik~ 298 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAER-LGSTSARSTFISS 298 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCchHHHHHHHH
Confidence 4433 67999999999999999999999998 8876544555433
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.61 E-value=1.6e+02 Score=25.65 Aligned_cols=96 Identities=10% Similarity=-0.136 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhh---cCCCCCCcchHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCcH----H
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSS---DTELKPDNFTFPCVIKAC-GGIADVGFGSGVHGMAAKMGLIGDV----F 236 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~~~t~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~~----~ 236 (311)
..+-....-||+-|+-+.|++.+.+-.+ ..|.+.|.+.+.+=+.-+ ....-+.+-.+..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3456667778888888888877766433 045566666554444332 2333344555555566666655442 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+|..+-. +...++.+|-.+|-+..
T Consensus 185 vY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 4443332 23457777777776665
No 384
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=52.38 E-value=2.1e+02 Score=26.97 Aligned_cols=183 Identities=10% Similarity=-0.029 Sum_probs=116.7
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
..+...|+.-+.--...| +++.+.-+|+.... +..-...|--.++.....|+.+.+..++.... +.-+ ++......
T Consensus 294 ~aql~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~-~i~~-k~~~~i~L 370 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC-KIHV-KKTPIIHL 370 (577)
T ss_pred HHHHHHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh-hhcC-CCCcHHHH
Confidence 345567999999999999 99999999999887 66666667666666666699998888887766 4433 33333332
Q ss_pred HHHHHHhc-CChhHHHHHHHhcCC--CChH-HHHHHHHHHHhCCChhhHH---HHHHHhhhcCCCCCCcchHHHHHHH--
Q 037178 139 LITMYSLC-GFPLDSRRVFDSLKT--RNLF-QWNALVSGFTKNELYTDVL---SIFVELSSDTELKPDNFTFPCVIKA-- 209 (311)
Q Consensus 139 ll~~~~~~-g~~~~A~~l~~~m~~--~~~~-~y~~li~~~~~~g~~~~a~---~~~~~m~~~~~~~p~~~t~~~li~~-- 209 (311)
+=..+.+. |+++.|..+++.+.+ |+.+ .-..-+..-.+.|..+.+. +++..... ... +..+...+.--
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~--~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE--NNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc--CcchhHHHHHHHH
Confidence 33334443 799999999988764 4332 2223344455677777777 33333322 111 22222222211
Q ss_pred ---HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 037178 210 ---CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA 249 (311)
Q Consensus 210 ---~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 249 (311)
+.-.++.+.|..++.++.+.- +++...|..+++.....+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 223467888888888887763 677888888888766555
No 385
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.35 E-value=1.1e+02 Score=23.94 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHH-----HHHhcccCCChhHHHHHHHHHHhhcCCCchhh-
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGV-----LLQACGHEKDIEIGKRVHELVSASTQFSNDFI- 134 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~- 134 (311)
.+...|-+-+. +++.+ ..++|+.-|..+.. .....|-. +.......|+...|...|+++- ...-.|-..
T Consensus 57 ~sgd~flaAL~-lA~~~-k~d~Alaaf~~lek--tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-~dt~~P~~~r 131 (221)
T COG4649 57 KSGDAFLAALK-LAQEN-KTDDALAAFTDLEK--TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGR 131 (221)
T ss_pred cchHHHHHHHH-HHHcC-CchHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-ccCCCcchhh
Confidence 33344444443 33445 56667766666665 11111211 1222345666666666666665 333233222
Q ss_pred HHHHHHHH--HHhcCChhHHHHHHHhcCCC-C---hHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 135 INTRLITM--YSLCGFPLDSRRVFDSLKTR-N---LFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 135 ~~~~ll~~--~~~~g~~~~A~~l~~~m~~~-~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
-..-|=.+ +...|-+++.....+.+..+ + ...-.+|--+-.+.|++.+|.+.|+.+..
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 11112222 23445555555555554422 1 12233444444556666666666666554
No 386
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.02 E-value=53 Score=20.53 Aligned_cols=14 Identities=14% Similarity=-0.178 Sum_probs=6.0
Q ss_pred cCChhhHHHHHHHH
Q 037178 213 IADVGFGSGVHGMA 226 (311)
Q Consensus 213 ~g~~~~a~~~~~~m 226 (311)
.|++-+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444444444444
No 387
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.51 E-value=1.6e+02 Score=25.39 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----------cCCHHH
Q 037178 184 LSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----------CAFVEE 253 (311)
Q Consensus 184 ~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~ 253 (311)
.++++.|++ .++.|.-+.|.-+---+...=.+.+..++++.+...... |..|+..||. .|++..
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 466777776 889999888888887788888888899999888765433 4555555542 477888
Q ss_pred HHHHHhhCCCCChhh
Q 037178 254 MVKLFEVMPERNLVS 268 (311)
Q Consensus 254 A~~~~~~m~~~~~~~ 268 (311)
..++++.-...|+..
T Consensus 337 nmkLLQ~yp~tdi~~ 351 (370)
T KOG4567|consen 337 NMKLLQNYPTTDISK 351 (370)
T ss_pred HHHHHhcCCCCCHHH
Confidence 888777666555543
No 388
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.23 E-value=47 Score=28.94 Aligned_cols=53 Identities=9% Similarity=-0.060 Sum_probs=41.6
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCC-ChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 71 TTLCEESKSLNKALSLLQENLHNAD-LKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
+.|.+.| .+++|++.|.......| |..++.--..+|.+...+..|+.-.....
T Consensus 105 N~yFKQg-Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQG-KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhcc-chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577889 99999999998888444 88888888888888888777666666555
No 389
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.08 E-value=2.3e+02 Score=27.09 Aligned_cols=84 Identities=10% Similarity=-0.036 Sum_probs=44.2
Q ss_pred hcCCCHHHHHHHHHhhcc---CCCC-----hhhHHHHHHh--cccCCChhHHHHHHH--------HHHhhcCCCchhhHH
Q 037178 75 EESKSLNKALSLLQENLH---NADL-----KEATGVLLQA--CGHEKDIEIGKRVHE--------LVSASTQFSNDFIIN 136 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~---~~~~-----~~~~~~ll~~--~~~~~~~~~a~~~~~--------~m~~~~g~~~~~~~~ 136 (311)
-.+ ++..|...++.|.. ..|+ ...+...+.+ +-..|+++.|...|. ... ..+...+..++
T Consensus 373 ~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~-~~~~~~El~il 450 (608)
T PF10345_consen 373 IRG-DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAAN-RKSKFRELYIL 450 (608)
T ss_pred HCc-CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhc-cCCcchHHHHH
Confidence 346 78888888887776 1122 1222223322 224588888888886 443 55555566555
Q ss_pred HHHHHHH--HhcC--ChhH--HHHHHHhcC
Q 037178 137 TRLITMY--SLCG--FPLD--SRRVFDSLK 160 (311)
Q Consensus 137 ~~ll~~~--~~~g--~~~~--A~~l~~~m~ 160 (311)
..|=.+. ...+ .-++ +.++++.+.
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~ 480 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIE 480 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcC
Confidence 4322222 1112 2222 667777665
No 390
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.64 E-value=2.1e+02 Score=26.62 Aligned_cols=177 Identities=11% Similarity=0.082 Sum_probs=121.8
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNA 169 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~ 169 (311)
...|.....+++..++..-..+-++.+..+|. ..| -+...|-.++.+|... .-++-..+++++.+ .|++--..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l-~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVL-EYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHH-Hhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Confidence 34577778889999998888899999999998 666 4566777799999998 55777788886654 34444445
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhcCCCCCC------cchHHHHHHHHhccCChhhHHHHHHHHHH-hCCCCcHHHHHHHH
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSDTELKPD------NFTFPCVIKACGGIADVGFGSGVHGMAAK-MGLIGDVFVSNALI 242 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~------~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li 242 (311)
|..-|-+ ++...+...|.+... . +-|- ...|.-++..- ..+.|....+...+.. .|..--...+.-+-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~y-r-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALY-R-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHH-H-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5555544 788888888887754 2 2231 12344444322 3456666666666654 35455567777777
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 037178 243 AMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSE 278 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~ 278 (311)
.-|....++.+|.+++..+.+ +|+.+-..+|.-+-.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 889999999999999997764 666666666655443
No 391
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.63 E-value=60 Score=23.15 Aligned_cols=41 Identities=15% Similarity=-0.099 Sum_probs=28.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG 246 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 246 (311)
++|+-+.++...++|.++.+.|.+.| ..+...-+.|-..+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45666777778888999999998888 555555555444433
No 392
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=50.59 E-value=85 Score=22.00 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHhCCChhhHHHHHHHhh
Q 037178 170 LVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~ 191 (311)
++..|...|++++|.+-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4445555556666666655554
No 393
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.52 E-value=1.6e+02 Score=25.11 Aligned_cols=77 Identities=10% Similarity=-0.148 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHhCC----CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 216 VGFGSGVHGMAAKMGL----IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-RNLVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
.++|.+.+......+. ..+......++....+.|..++-..+++.... ++..-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455566666555321 33455555566666666666555555555443 345555666666666666666666666
Q ss_pred hh
Q 037178 291 KM 292 (311)
Q Consensus 291 ~m 292 (311)
..
T Consensus 226 ~~ 227 (324)
T PF11838_consen 226 LL 227 (324)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 394
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.52 E-value=1.2e+02 Score=24.36 Aligned_cols=84 Identities=11% Similarity=-0.144 Sum_probs=62.1
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH---HHHHHHhCCC
Q 037178 209 ACGGIADVGFGSGVHGMAAKMGLIGD----VFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNS---IICGFSENGF 281 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~---li~~~~~~g~ 281 (311)
-+.+.|++++|..-|.+.+...-... .+.|..-..++.+.++.+.|..-..+..+-+..---+ -..+|-+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 35788999999999999887742222 3556666678899999999998888877755432222 3446788889
Q ss_pred cchHHHHHHhh
Q 037178 282 SCESFDLLIKM 292 (311)
Q Consensus 282 ~~~a~~l~~~m 292 (311)
+++|++=|..+
T Consensus 184 ~eealeDyKki 194 (271)
T KOG4234|consen 184 YEEALEDYKKI 194 (271)
T ss_pred HHHHHHHHHHH
Confidence 99999888887
No 395
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.36 E-value=1.1e+02 Score=28.02 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=67.7
Q ss_pred cCCChhHH-HHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHH
Q 037178 109 HEKDIEIG-KRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVL 184 (311)
Q Consensus 109 ~~~~~~~a-~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~ 184 (311)
..|++..| .++++.+. ...-.|+....-+ ..+...|+++.+...+..... .+..+-.+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr-~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALR-NQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHH-hCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45665544 45555555 4433455443332 334566888888877766543 45567777888888888888888
Q ss_pred HHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 185 SIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 185 ~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.+-+.|.. ..+.-.+ ..+...-..-..|-+|++...|+++..-
T Consensus 378 s~a~~~l~-~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLS-NEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhc-cccCChh-heeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88777765 4443222 1222222234456677777777666543
No 396
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=2e+02 Score=25.97 Aligned_cols=113 Identities=5% Similarity=-0.082 Sum_probs=62.0
Q ss_pred CHHHHHHHHHhhccCCCChhhHHHHH-------------HhcccCCChhHHHHHHHHHHhhc---CCCchhhHHHHHHHH
Q 037178 79 SLNKALSLLQENLHNADLKEATGVLL-------------QACGHEKDIEIGKRVHELVSAST---QFSNDFIINTRLITM 142 (311)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~~~~~~~ll-------------~~~~~~~~~~~a~~~~~~m~~~~---g~~~~~~~~~~ll~~ 142 (311)
+.+.|...|++.....||...-..+- +-..+.|.+..|.+.|.+.+ .. +.+++...|-..-..
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhh
Confidence 56667777777666555544332221 12334567777777777766 32 233444555555556
Q ss_pred HHhcCChhHHHHHHHhcCCCChH---HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 143 YSLCGFPLDSRRVFDSLKTRNLF---QWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
..+.|+.++|..--+...+-|.. .|---..++.-.++|++|.+-|+...+
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667777777666655544332 222222333444667777777766544
No 397
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.62 E-value=1.1e+02 Score=22.85 Aligned_cols=63 Identities=6% Similarity=-0.094 Sum_probs=42.1
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 186 IFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 186 ~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
+.+.+++ .|++++.. -..+++.+...++.-.|.++++++.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~-~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKE-AGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHH-cCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3344455 77766543 346677777777778899999999988766665555555566666664
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.39 E-value=2.2e+02 Score=28.47 Aligned_cols=113 Identities=9% Similarity=0.013 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCC--h-----HHHHHHHHHHHhCCCh--hhHHHHHHHhhhcCCCCCCcchHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTRN--L-----FQWNALVSGFTKNELY--TDVLSIFVELSSDTELKPDNFTFPC 205 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~-----~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~p~~~t~~~ 205 (311)
-|..|+..|...|+-++|+++|.+....+ . ..+.-++.-..+.+.. +-+++.-....+ ..-.-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~-~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN-KNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc-cCchhheeeeec
Confidence 36678888888888888888888776421 1 1233344444444443 333333333322 111111111111
Q ss_pred ------------HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 206 ------------VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 206 ------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
-+-.+.+....+-+..+++.+....-..+....+.++..|++.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2234456667777788888887776677888888888888753
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.05 E-value=1.6e+02 Score=24.53 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH--------------------HHHHHHHHhCCCcchHHHHHHhh
Q 037178 234 DVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW--------------------NSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y--------------------~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|......+...|.+.|++.+|+..|-.-.+++...+ ...+--|+-.++...|.++++..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 678888888999999999998887755443222221 23444566678888888888777
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.77 E-value=1.9e+02 Score=25.23 Aligned_cols=55 Identities=4% Similarity=-0.063 Sum_probs=30.5
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (311)
-+.-+..+.|+..+|.+.++.+.+.-- ..-..+...||+++....-+.++..++-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677777777777777655421 1112334456666666655555555543
No 401
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.65 E-value=76 Score=25.30 Aligned_cols=61 Identities=7% Similarity=-0.169 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
...+.+++.+.-.|+++.|-+.|.-+....++..- ..|..=+..+.+.+.-....++++.|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHHHHH
Confidence 45788999999999999999999888762222211 13444444444444443333444433
No 402
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=47.35 E-value=69 Score=21.01 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=5.3
Q ss_pred hcCChhHHHHHHH
Q 037178 145 LCGFPLDSRRVFD 157 (311)
Q Consensus 145 ~~g~~~~A~~l~~ 157 (311)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444443
No 403
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.97 E-value=59 Score=20.60 Aligned_cols=51 Identities=6% Similarity=-0.153 Sum_probs=35.4
Q ss_pred CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 196 LKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 196 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
+.|....++-++...++..-.+++...+++..+.| ..+..+|-.-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34666677778888888777888888888888777 3566666666666655
No 404
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=45.85 E-value=1.5e+02 Score=26.50 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH--------------------HHhhCCCCChhhHHHHHHHHHhCC
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK--------------------LFEVMPERNLVSWNSIICGFSENG 280 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~--------------------~~~~m~~~~~~~y~~li~~~~~~g 280 (311)
..+..+.+.|.-.|...+...+..+...-.++||.+ +++..-.||+..|.++...++.-+
T Consensus 172 ~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~ 251 (391)
T cd07229 172 RRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSA 251 (391)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcc
Confidence 334444555655566666666666555556666653 344444599999999998888776
Q ss_pred CcchHHHH
Q 037178 281 FSCESFDL 288 (311)
Q Consensus 281 ~~~~a~~l 288 (311)
-+.....+
T Consensus 252 ~~~~~~~L 259 (391)
T cd07229 252 ALYRSVTL 259 (391)
T ss_pred ccCCCceE
Confidence 55533333
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.65 E-value=17 Score=34.23 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred hCCCcchHHHHHHhhhhccCCCCCCceeE
Q 037178 278 ENGFSCESFDLLIKMMGCEEGFIPDVITV 306 (311)
Q Consensus 278 ~~g~~~~a~~l~~~m~~~~~g~~P~~~t~ 306 (311)
+.|++.+|.+.+-.+ ...++.|...-.
T Consensus 507 ~~~~~~~Aa~~Lv~L--l~~~~~Pk~f~~ 533 (566)
T PF07575_consen 507 DEGDFREAASLLVSL--LKSPIAPKSFWP 533 (566)
T ss_dssp -----------------------------
T ss_pred hhhhHHHHHHHHHHH--HCCCCCcHHHHH
Confidence 347777787777777 677777765433
No 406
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.38 E-value=40 Score=16.79 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=6.3
Q ss_pred ChhHHHHHHHHHH
Q 037178 112 DIEIGKRVHELVS 124 (311)
Q Consensus 112 ~~~~a~~~~~~m~ 124 (311)
+.+.+..+|+.+.
T Consensus 2 ~~~~~r~i~e~~l 14 (33)
T smart00386 2 DIERARKIYERAL 14 (33)
T ss_pred cHHHHHHHHHHHH
Confidence 3444555555544
No 407
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=45.10 E-value=1.1e+02 Score=21.85 Aligned_cols=72 Identities=8% Similarity=-0.069 Sum_probs=50.2
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC------------------CCcHHHHHHHHHHHHh
Q 037178 186 IFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL------------------IGDVFVSNALIAMYGK 247 (311)
Q Consensus 186 ~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------~~~~~~~~~li~~~~~ 247 (311)
.|.++....+-.|..+|..-+...++-. -..+..++..|.+.|+ ..-...+...+..+..
T Consensus 5 ~y~~L~~~~~~~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~ 82 (115)
T PF12793_consen 5 QYQRLWQHYGGQPVEVTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLE 82 (115)
T ss_pred HHHHHHHHcCCCCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHH
Confidence 3444443244456677888777776543 3367788888888764 2335667777888889
Q ss_pred cCCHHHHHHHHh
Q 037178 248 CAFVEEMVKLFE 259 (311)
Q Consensus 248 ~g~~~~A~~~~~ 259 (311)
.|++++|.++++
T Consensus 83 ~g~~~~a~~ll~ 94 (115)
T PF12793_consen 83 QGKYEQALQLLD 94 (115)
T ss_pred cCCHHHHHHHHH
Confidence 999999999888
No 408
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.82 E-value=2.8e+02 Score=26.22 Aligned_cols=152 Identities=9% Similarity=-0.015 Sum_probs=86.2
Q ss_pred hcCCCHHHHHHHHHhhcc------CCCChhhHHHHHHhcccCC-----ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 75 EESKSLNKALSLLQENLH------NADLKEATGVLLQACGHEK-----DIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~------~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
... +++.|+..|+.+.+ .+-+.....-+..+|.+.. +.+.|..++...- +.| .|+....-..+...
T Consensus 261 ~~~-d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQ-DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccc-cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcC-CchHHHHHHHHHHc
Confidence 445 88888888887632 2224445555666665543 5566888888887 666 44444332222222
Q ss_pred Hh-cCChhHHHHHHHhcCCC-ChHHHHHHHHHHH----hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 144 SL-CGFPLDSRRVFDSLKTR-NLFQWNALVSGFT----KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 144 ~~-~g~~~~A~~l~~~m~~~-~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
.. ..+...|.+.|...-+. .+.++-.+..+|. -..+...|+.++++.-+ .| .|...--...+..+.. ++.+
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~-~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAE-KG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHH-cc-ChhhHHHHHHHHHHcc-cccc
Confidence 22 23567888888876543 3322222222221 23467788888888877 66 3333333334444444 7777
Q ss_pred hHHHHHHHHHHhCCC
Q 037178 218 FGSGVHGMAAKMGLI 232 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~ 232 (311)
.+...+..+...|.+
T Consensus 415 ~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 415 TALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777777776666643
No 409
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.72 E-value=1.4e+02 Score=23.00 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=5.8
Q ss_pred ChhhHHHHHHHhhh
Q 037178 179 LYTDVLSIFVELSS 192 (311)
Q Consensus 179 ~~~~a~~~~~~m~~ 192 (311)
+.-.|.++++++.+
T Consensus 40 ~hlSa~eI~~~L~~ 53 (169)
T PRK11639 40 GAISAYDLLDLLRE 53 (169)
T ss_pred CCCCHHHHHHHHHh
Confidence 33344444444443
No 410
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.51 E-value=56 Score=30.86 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFV 188 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~ 188 (311)
.-..++..|.+.|..+.|.++.+.+..+ ...-|..-+.-+.++|+...+..+-.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444556666666666666665554322 11224444444444444444444433
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.33 E-value=1.2e+02 Score=22.01 Aligned_cols=42 Identities=5% Similarity=0.063 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcCCCc-hhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178 115 IGKRVHELVSASTQFSN-DFIINTRLITMYSLCGFPLDSRRVFD 157 (311)
Q Consensus 115 ~a~~~~~~m~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~ 157 (311)
.+.++|..|. ..|+-- -...|...-..+.+.|++++|.++|.
T Consensus 81 ~~~~if~~l~-~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLY-SKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHH-HHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6667777776 555433 33455666666666677777766665
No 412
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.02 E-value=1.1e+02 Score=21.38 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=8.4
Q ss_pred HHhcccCCChhHHHHHHHHH
Q 037178 104 LQACGHEKDIEIGKRVHELV 123 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m 123 (311)
+..|...|+.++|..-+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33344444555544444443
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.73 E-value=1.6e+02 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=11.4
Q ss_pred HHHHHhCCChhhHHHHHHHhh
Q 037178 171 VSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~ 191 (311)
+..|.++|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 444555555555555555553
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.29 E-value=41 Score=17.90 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=14.5
Q ss_pred CHHHHHHHHHhhccCCCChhhHHH
Q 037178 79 SLNKALSLLQENLHNADLKEATGV 102 (311)
Q Consensus 79 ~~~~a~~~~~~m~~~~~~~~~~~~ 102 (311)
.++.|..+|++...+.|++.+|..
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHH
Confidence 456666666666665566655543
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.16 E-value=1e+02 Score=20.86 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=22.2
Q ss_pred hcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhH
Q 037178 145 LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDV 183 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a 183 (311)
..|+.+.|..+++.+. +..-.|...++++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466666666666666 5555566666666655554433
No 416
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.14 E-value=76 Score=21.10 Aligned_cols=35 Identities=14% Similarity=-0.071 Sum_probs=24.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNA 240 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 240 (311)
++++.+.+..-.++|.++++.|.+.| ..+...-+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45666677777888888888888888 445444443
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.95 E-value=21 Score=26.34 Aligned_cols=33 Identities=15% Similarity=-0.043 Sum_probs=25.3
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM 244 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 244 (311)
..+.|.-.+|..+|..|++.|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3456777889999999999998887 46666654
No 418
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.59 E-value=1.9e+02 Score=27.41 Aligned_cols=110 Identities=10% Similarity=-0.025 Sum_probs=68.7
Q ss_pred hHHHHHHHhcCCCChHHHHHH---HHHHHhCCChhhHHHHHHHhhhcCCCCC--CcchHHHHHHHHhccCChhhHHHHHH
Q 037178 150 LDSRRVFDSLKTRNLFQWNAL---VSGFTKNELYTDVLSIFVELSSDTELKP--DNFTFPCVIKACGGIADVGFGSGVHG 224 (311)
Q Consensus 150 ~~A~~l~~~m~~~~~~~y~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~ 224 (311)
+-+-.+|-.|.+++..-|-+| --.+-..|+...|...+..... ..| .-+....|.+...+.|..-+|-.++.
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 335566666666655444322 1122345777777777766543 333 33455566667777777777777777
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 225 MAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 225 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
....-. .....++-.+.++|....+++.|.+.|++..+
T Consensus 667 q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 667 QALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 665554 34456666777788888888888888877664
No 419
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.48 E-value=2.1e+02 Score=24.27 Aligned_cols=109 Identities=7% Similarity=0.000 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG 246 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 246 (311)
--.++..+-+.++..+..+.++.++. ...-...++.+...|++..|.++..+..+.= . +..-|+++=..
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L-- 169 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL-- 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH--
Confidence 34455666666666667766666643 3334566777789999999999988776531 0 11111111111
Q ss_pred hcCCHHHHHHHHhhCC---------CCChhhHHHHHHHHHhCCCcchHHH
Q 037178 247 KCAFVEEMVKLFEVMP---------ERNLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 247 ~~g~~~~A~~~~~~m~---------~~~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
..++++-....+++. +-|...|..++.||.-.|+.+.+.+
T Consensus 170 -~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 170 -SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 123334444444333 2688999999999999998766653
No 420
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.18 E-value=88 Score=22.04 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=24.8
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
+++.+...+..-.|.++++.+.+.+...+..|.--.++.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444445555666666666665555555544555555555543
No 421
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.70 E-value=1.6e+02 Score=24.31 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=13.0
Q ss_pred HhCCCcchHHHHHHhh
Q 037178 277 SENGFSCESFDLLIKM 292 (311)
Q Consensus 277 ~~~g~~~~a~~l~~~m 292 (311)
+..+++.+|+++|++.
T Consensus 165 a~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567888999999887
No 422
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=41.58 E-value=1.1e+02 Score=20.74 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCc
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFS 282 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~ 282 (311)
...+++.+.+.|+- +...+..+ .....+.+.+.++++.+..++..+|..+..++-..|..
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I---~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESI---MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHH---HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 44577777777743 22222222 23446778888899888888888999998888765543
No 423
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.16 E-value=1.1e+02 Score=20.51 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=27.1
Q ss_pred HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhh
Q 037178 144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTD 182 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~ 182 (311)
+..-..+.|.++++.++.++..+|....+++-..|...-
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 344556777777777777777777777777777665443
No 424
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.99 E-value=55 Score=26.36 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHhhhcCCCCC-------CcchHHHHHHHHhccC---------ChhhHHHHHHHHHHhCCCC-cHHHHHHH
Q 037178 179 LYTDVLSIFVELSSDTELKP-------DNFTFPCVIKACGGIA---------DVGFGSGVHGMAAKMGLIG-DVFVSNAL 241 (311)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~p-------~~~t~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~~-~~~~~~~l 241 (311)
..+.|..++.+|-- ..++. ...-|..+..+|.+.| +.+...++++..++.|++- =..+|+++
T Consensus 136 ~vetAiaml~dmG~-~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDMGG-SSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHcCC-CeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 35677778877765 43332 2234777788887776 3455566777777777543 34678888
Q ss_pred HHHHHhcCCHHHHHHHHhhCC
Q 037178 242 IAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~ 262 (311)
|+--.-.-+.++..+++..++
T Consensus 215 IDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccccCCCCHHHHHHHHHHhh
Confidence 876555567777777776654
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.66 E-value=71 Score=25.14 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhhcCCCch-hh-----HHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 113 IEIGKRVHELVSASTQFSND-FI-----INTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 113 ~~~a~~~~~~m~~~~g~~~~-~~-----~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
++.|..+|+.+.++...+-+ .. .--..+-.|.+.|.+++|.+++++.-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 35577777777633332111 11 12233455677777777777777654
No 426
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.14 E-value=2.3e+02 Score=24.26 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=46.5
Q ss_pred HHHHHHh---CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh-----hHHHHHHHHHHhCCCC
Q 037178 170 LVSGFTK---NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG-----FGSGVHGMAAKMGLIG 233 (311)
Q Consensus 170 li~~~~~---~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~-----~a~~~~~~m~~~g~~~ 233 (311)
+|+++.| ..+++.|+-.+.+|.+ .|-.|.-..-..++-+.-..|.-+ .|...++....-|++-
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~-~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLD-NGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Confidence 4566654 4689999999999999 998888888888888888777543 4555566666667544
No 427
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.86 E-value=2.5e+02 Score=24.28 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHhCCCcch
Q 037178 267 VSWNSIICGFSENGFSCE 284 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~ 284 (311)
.+|.-|+.++|..|+.+-
T Consensus 322 K~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HhhhHHHHHHhcCChHHH
Confidence 345556666666665554
No 428
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.62 E-value=1.2e+02 Score=24.98 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
-+-.-|.+.|++++|.++|+.+.. . .......+..++.+.|+.+..+.+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 466667777788888877777641 1 2234456667777777777777765554
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.35 E-value=1.2e+02 Score=27.21 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcC--CC---------ChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLK--TR---------NLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~--~~---------~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
..-.|++..+-.|++..|+++++.+. ++ .+.+|--+.=+|...+++.+|.++|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888899999999988875 11 3455667777888888999999988775
No 430
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.21 E-value=2e+02 Score=22.94 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC------CChHHHHHHHH-HHHhCCC--hhhHHHHHHHhhh
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKT------RNLFQWNALVS-GFTKNEL--YTDVLSIFVELSS 192 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~------~~~~~y~~li~-~~~~~g~--~~~a~~~~~~m~~ 192 (311)
++...-.....|++++|..-++.+.+ +-...|..+.. +++..+. +-+|.-++.-...
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 33344444566778888877777653 23345666655 5666554 4566666655554
No 431
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=1.3e+02 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=16.9
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
++-+........+.| ++++|..-++++.+
T Consensus 29 i~r~s~~aI~~~H~~-~~eeA~~~l~~a~~ 57 (204)
T COG2178 29 IVRLSGEAIFLLHRG-DFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 334445555555666 67766666666554
No 432
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.73 E-value=3.4e+02 Score=25.59 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=101.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
+..+....++.|++.+.... .+.-.++++++.. .+ ...+..++.+....|-.+...-+.+.+. ...+.+ ...-.
T Consensus 305 ~~~~~~~~f~~lv~~lR~~~--~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~-~~~~~~-~ea~~ 378 (574)
T smart00638 305 VQEPAAAKFLRLVRLLRTLS--EEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIK-NKKITP-LEAAQ 378 (574)
T ss_pred hccchHHHHHHHHHHHHhCC--HHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCCCH-HHHHH
Confidence 33445556777777665444 6777777777654 22 5678888888888888877777777776 544433 22222
Q ss_pred HHHHHHHhc-CChhHHHHHHHhc-CC----CC-------hHHHHHHHHHHHhCCCh------hhHHHHHHHhhhcCCCCC
Q 037178 138 RLITMYSLC-GFPLDSRRVFDSL-KT----RN-------LFQWNALVSGFTKNELY------TDVLSIFVELSSDTELKP 198 (311)
Q Consensus 138 ~ll~~~~~~-g~~~~A~~l~~~m-~~----~~-------~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~p 198 (311)
.+.....-. .-..+..+.+..+ .. +. ..+|.+++.-+|..... ++....+.+.....--.-
T Consensus 379 ~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 458 (574)
T smart00638 379 LLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKG 458 (574)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 233322222 2223333333333 21 12 35677777766665542 334444443322011112
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc--CCHHHHHHHH
Q 037178 199 DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC--AFVEEMVKLF 258 (311)
Q Consensus 199 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~ 258 (311)
|..--...|++++..|...-...+...+. .....+...-...+.++.+. ...+++..++
T Consensus 459 ~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 459 DEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred CchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 33334567788888887655444433333 22334555566666666543 2344444433
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.69 E-value=1.2e+02 Score=20.46 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=9.9
Q ss_pred HhcCCCHHHHHHHHHhhcc
Q 037178 74 CEESKSLNKALSLLQENLH 92 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~~ 92 (311)
.+.| ++.+|.+-+.+...
T Consensus 9 ~~~~-dy~~A~d~L~~~fD 26 (94)
T PF12862_consen 9 LRSG-DYSEALDALHRYFD 26 (94)
T ss_pred HHcC-CHHHHHHHHHHHHH
Confidence 3555 66666555555443
No 434
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=3.3e+02 Score=25.29 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=88.6
Q ss_pred hhHHHHHHHhcCCCCh----------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--c-hHH----HHHH-HH
Q 037178 149 PLDSRRVFDSLKTRNL----------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--F-TFP----CVIK-AC 210 (311)
Q Consensus 149 ~~~A~~l~~~m~~~~~----------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~-t~~----~li~-~~ 210 (311)
.|+|....++.++.|. .+...++-+-.-.|++.+|++-..+|++-..-.|.. . ... .++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4455555555665441 223344444556799999999999997622333431 1 112 2222 24
Q ss_pred hccCChhhHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH--------HHHHH--Hh
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNS--------IICGF--SE 278 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~--------li~~~--~~ 278 (311)
+..+.++.|+.-|....+.--.-| ...-..+.-.|.+.|+.+.-.++++.+.-+|..++.. ++.|+ ..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 567889999887766655422223 3334455667899999999999999888765544322 12222 35
Q ss_pred CCCcchHHHHHHhh
Q 037178 279 NGFSCESFDLLIKM 292 (311)
Q Consensus 279 ~g~~~~a~~l~~~m 292 (311)
.|++.+|...+++-
T Consensus 458 qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 458 QNDLNEAKRFLRET 471 (629)
T ss_pred hccHHHHHHHHHHH
Confidence 78899999888876
No 435
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.66 E-value=99 Score=22.03 Aligned_cols=47 Identities=4% Similarity=0.002 Sum_probs=28.8
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
.+++.+...+..-.|.++++.+.+.|...+..|.---++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45666666666777777777777777666655444455566666543
No 436
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=38.64 E-value=28 Score=31.07 Aligned_cols=126 Identities=9% Similarity=-0.052 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcC-------C--CChHHHHHHHHHHHhCCChhhHHHHHHHhhh---cCCCC-CCcc
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLK-------T--RNLFQWNALVSGFTKNELYTDVLSIFVELSS---DTELK-PDNF 201 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~-------~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~-p~~~ 201 (311)
.|..|-+.|.-.|+++.|...-+.-. . ....++..+..++.-.|+++.|.+.|+.-.. +.|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44455555556678888876554321 1 1335678888888888999999888876432 01111 1234
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHh-----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKM-----GLIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
++-+|-+.|.-..++++|..++.+-..- ...-....|-+|..+|...|..++|+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5556777777778888888877653321 1233456778888888888888888776653
No 437
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.14 E-value=1.5e+02 Score=27.33 Aligned_cols=120 Identities=7% Similarity=-0.069 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCHHHHHH-HHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 67 LQEITTLCEESKSLNKALS-LLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~-~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
..-|..-...| +...|-+ +|..++. ..|+.....+.|. ...|+++.+.+.+.... + -+.....+-.+++...
T Consensus 293 ~~si~k~~~~g-d~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~-~-~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 293 TLSITKQLADG-DIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVE-K-IIGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHhhcc-CHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchh-h-hhcCCchHHHHHHHhh
Confidence 34455555667 6665554 4444444 4455444444443 46788888887777664 1 2234455667788888
Q ss_pred HhcCChhHHHHHHHhcCCCCh---HHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 144 SLCGFPLDSRRVFDSLKTRNL---FQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
.+.|++++|..+-+-|....+ ...+.....--..|-++++.-.+++..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 888888888888777653211 111111111122355666666666553
No 438
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.35 E-value=72 Score=22.50 Aligned_cols=48 Identities=10% Similarity=-0.030 Sum_probs=31.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 169 ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
.++..+...+..-.|.++++++.+ .+...+..|.--.++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~-~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRK-KGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355556666677778888888877 666666666656666666666544
No 439
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.25 E-value=2.2e+02 Score=24.79 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc---CCCChhhHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH---NADLKEATGVL 103 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~~~~~~l 103 (311)
.+++.|.+.| .+++|+++....++ .-|+......+
T Consensus 111 ~Lm~~ci~~g-~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 111 QLMDTCIRNG-NYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHhcc-cHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 6677888888 88888887777665 44554444433
No 440
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.85 E-value=2.7e+02 Score=23.58 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-----C--CCChhhHHHHHHhcccCCChhHHHHHHHHHHhh----cCCCchhh
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-----N--ADLKEATGVLLQACGHEKDIEIGKRVHELVSAS----TQFSNDFI 134 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-----~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~ 134 (311)
...+|....+.| ++++..+.+.++.. + .-+....|+++...+...+.+...+.++.-.+. .+-..--.
T Consensus 68 LKQmiKI~f~l~-~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLG-NYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 456788999999 99999999999876 2 223446777777766666665555555432211 11111122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC---------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTR---------------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD 199 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 199 (311)
|-+.|-..|...|.+.+-.++++++.+. =...|..=|..|....+-.+-..+|++...-..--|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 4456777888888888888888877521 1245777788888887777778888776432333455
Q ss_pred cchHHHHHHHH-----hccCChhhHHH
Q 037178 200 NFTFPCVIKAC-----GGIADVGFGSG 221 (311)
Q Consensus 200 ~~t~~~li~~~-----~~~g~~~~a~~ 221 (311)
.....+ |+-| .+.|++++|..
T Consensus 227 PlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 227 PLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hHHHhH-HHHcCCccccccchHHHHHh
Confidence 554443 3333 35567776643
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.29 E-value=3.1e+02 Score=23.98 Aligned_cols=131 Identities=9% Similarity=-0.027 Sum_probs=67.9
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC--------Ch
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR--------NL 164 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--------~~ 164 (311)
++.|...++.+..+ ....+++-.+..++..+..|-.--...+-.....||+.|+-+.|++.++.--++ |+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 56677777777665 334455555555555533343333445556777888888888888888764432 55
Q ss_pred HHHHHHHHHHHh-CCChhhHHHHHHHhhhcCCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 165 FQWNALVSGFTK-NELYTDVLSIFVELSSDTELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 165 ~~y~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
+-+.+=+.-+.. ..-+.+-++.-+.+.+ .|..-+. .+|-.+-. -...++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE-~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIE-EGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH-hCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 444433332222 1123333333344444 4443332 23433322 223366777776655443
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.16 E-value=1.4e+02 Score=20.15 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHhhCC
Q 037178 244 MYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~ 262 (311)
.....|+.++|.+.+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444555555555555443
No 443
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.91 E-value=3.8e+02 Score=24.94 Aligned_cols=95 Identities=7% Similarity=0.017 Sum_probs=56.7
Q ss_pred CCCCcchHH-HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH---HhcCCHHHHHHHHhhCCC---CChhh
Q 037178 196 LKPDNFTFP-CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY---GKCAFVEEMVKLFEVMPE---RNLVS 268 (311)
Q Consensus 196 ~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~---~~~~~ 268 (311)
..|+..|+. .+++.+-..|-..+|++++..+.... +|+...|.-+|+.- ..+| +.-+.++++.|.. .|+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 345555543 55566666667777777777665553 55666776666532 2223 5566666666552 56666
Q ss_pred HHHHHHHHHhCCCcchHHHHHHhh
Q 037178 269 WNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 269 y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|--.+.--...|+.+.+-.++-+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHH
Confidence 666666666677776666665554
No 444
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=34.52 E-value=1.5e+02 Score=20.24 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 179 LYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
+.+....+|....+ .+|.+.|...|++++..++..
T Consensus 40 ~~~~il~l~l~~L~----d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 40 DIPKILDLFLSQLK----DEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred hHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHHHHC
Confidence 34555566655544 467888888888777765543
No 445
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.43 E-value=1.9e+02 Score=21.23 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=39.5
Q ss_pred CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178 128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVE 189 (311)
Q Consensus 128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~ 189 (311)
|-+-...+--++..++.-.|..++|.++++..+=- -...-.-+++.|.+..+.++..++-++
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33344555667777777778888888888777632 222334577777777777776666444
No 446
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.14 E-value=1.5e+02 Score=20.01 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHH
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~ 286 (311)
+..+++.+.+.|+ .+..-+..+- .+..+.++|.++++.+..++..+|....+++-..|..+-|.
T Consensus 16 v~~ild~L~~~gv-lt~~~~e~I~---~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 16 TSYIMDHMISDGV-LTLDEEEKVK---SKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHH---cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHH
Confidence 4557777777773 3333333332 35667888888888888888888888888887766554443
No 447
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.12 E-value=1.9e+02 Score=28.97 Aligned_cols=111 Identities=8% Similarity=0.069 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC---cchHHHHHHHHhccCCh--hhHHHHHHHHHHhCCCCcHHHHHH-
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPD---NFTFPCVIKACGGIADV--GFGSGVHGMAAKMGLIGDVFVSNA- 240 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~- 240 (311)
|..|+.-|...|+.++|++++.+... .--.-| ..-+--+++-+.+.+.- +.++++-+...+..-.-...+++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d-~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD-EDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc-cccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 88999999999999999999999875 110111 12233467777666655 556665555554432212222222
Q ss_pred -----------HHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHh
Q 037178 241 -----------LIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGFSE 278 (311)
Q Consensus 241 -----------li~~~~~~g~~~~A~~~~~~m~~----~~~~~y~~li~~~~~ 278 (311)
-+-.|.+....+-+...++.+.. .+....|.++.-|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 22344555566666777776652 456667777777765
No 448
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=33.49 E-value=21 Score=32.21 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred CChhHHHHHHHhcC--CCCh----------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHH---HHHHHHh
Q 037178 147 GFPLDSRRVFDSLK--TRNL----------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFP---CVIKACG 211 (311)
Q Consensus 147 g~~~~A~~l~~~m~--~~~~----------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~---~li~~~~ 211 (311)
|.-..-+++|+.+. .|.+ ..|++|..++.++-.+.+. .+=.+|.. .+-.-+.++.. .-..+.|
T Consensus 461 ~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~-~ik~E~i~-~~nqkse~im~~Gkht~~~~c 538 (650)
T KOG4334|consen 461 GKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDL-VIKKEMIG-NGNQKSEVIMILGKHTEEAEC 538 (650)
T ss_pred ccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcce-eeeeeccC-CCCccceeEeeeccceeeeee
Confidence 34455678888876 3333 3488898888887655422 22234433 33334444321 1112223
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
+ ...++.++-.+-.-..+-|...+|.+|++.|++.
T Consensus 539 k--nkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 539 K--NKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred e--chhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 3 3334444443333334578999999999999876
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.46 E-value=4.8e+02 Score=26.28 Aligned_cols=129 Identities=13% Similarity=0.004 Sum_probs=82.3
Q ss_pred HHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178 141 TMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 220 (311)
.....+|+++.|++.-..+.++ .+|..|...-.+.|+.+-|...|++.+. |..|---|.-.|+.++..
T Consensus 651 ~LaLe~gnle~ale~akkldd~--d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDDK--DVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCcH--HHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHH
Confidence 3445677777777776666544 4799999999999999999999988876 222223345567777777
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++......++ |... .+.. -.-.|++++=.++++.....+.. | ..-..+|.-+.|.++.++.
T Consensus 719 Km~~iae~r~---D~~~--~~qn-alYl~dv~ervkIl~n~g~~~la-y----lta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 719 KMMKIAEIRN---DATG--QFQN-ALYLGDVKERVKILENGGQLPLA-Y----LTAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHHHHHHhhh---hhHH--HHHH-HHHhccHHHHHHHHHhcCcccHH-H----HHHhhcCcHHHHHHHHHhh
Confidence 6665554332 2211 1111 12357888888888876653321 1 1123467778899999888
No 450
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=32.94 E-value=1.4e+02 Score=19.46 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.5
Q ss_pred CCcchHHHHHHhh
Q 037178 280 GFSCESFDLLIKM 292 (311)
Q Consensus 280 g~~~~a~~l~~~m 292 (311)
|....|.+-|.+|
T Consensus 59 G~L~~aL~ey~~~ 71 (82)
T PF11123_consen 59 GELAAALEEYKKM 71 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566666665
No 451
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.65 E-value=1.2e+02 Score=18.31 Aligned_cols=29 Identities=10% Similarity=-0.083 Sum_probs=16.7
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCChhh
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADLKEA 99 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~~~ 99 (311)
--++.+.| ++++|.+..+.+.+..|+...
T Consensus 8 Aig~ykl~-~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 8 AIGHYKLG-EYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHhh-hHHHHHHHHHHHHhhCCCcHH
Confidence 34556666 777777777776665555433
No 452
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.55 E-value=2.2e+02 Score=24.99 Aligned_cols=70 Identities=14% Similarity=-0.013 Sum_probs=55.7
Q ss_pred hcCCCHHHHHHHHHhhccCCCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178 75 EESKSLNKALSLLQENLHNADLK----EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL 145 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~ 145 (311)
..|...++++.++..+...-|++ -.|..+.+.....|.++.+..+|+.++ ..|..|-...-.++++.+-.
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi-~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI-LAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHh
Confidence 34535678888888887744553 458888899999999999999999999 99999988888877777653
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.48 E-value=3.4e+02 Score=24.44 Aligned_cols=90 Identities=8% Similarity=-0.092 Sum_probs=58.6
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCh----------------HHHHHHHHHHHhCCChhhHHHHHHHhhhc-CC----C
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKTRNL----------------FQWNALVSGFTKNELYTDVLSIFVELSSD-TE----L 196 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~~~~----------------~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~----~ 196 (311)
.++..+....+..+-.+..+....++. .+.-.|++.++-.|++..|+++++.+.-. .+ +
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V 159 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV 159 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC
Confidence 355555666666666665555443322 34567888889999999999998877431 11 1
Q ss_pred CC-CcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 197 KP-DNFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 197 ~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
.+ ...||-.+--+|...+++.+|.++|....
T Consensus 160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 23456666667788889999988887654
No 454
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=32.45 E-value=2.4e+02 Score=24.43 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=39.3
Q ss_pred HHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 184 LSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 184 ~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.+-++.+..+.|+.-|...+..+++ ...|++.+|+.+++.+-..|-..+....+.++.
T Consensus 194 v~rL~~Ia~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 194 VDRLEKIASKEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSLLGKRITTSLVNEELA 251 (346)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhccCcccchHHHHHHHh
Confidence 3344555444788888888888877 567899999999988877665555444444443
No 455
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.43 E-value=1.5e+02 Score=23.28 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCC-----------hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 180 YTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIAD-----------VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
+++|+.-|++... +.|+. .++..+-.++...+. +++|...|+...+. .|+..+|+.-++...+
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh
Q ss_pred c
Q 037178 248 C 248 (311)
Q Consensus 248 ~ 248 (311)
.
T Consensus 126 a 126 (186)
T PF06552_consen 126 A 126 (186)
T ss_dssp H
T ss_pred h
No 456
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.40 E-value=2.9e+02 Score=25.83 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 182 DVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
+....++...+..|+..+......++.. ..|++..|...++.+.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 3344444433325665555555555543 3466666666666653
No 457
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.32 E-value=3.3e+02 Score=23.50 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc---CChhHHHHH
Q 037178 80 LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC---GFPLDSRRV 155 (311)
Q Consensus 80 ~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~---g~~~~A~~l 155 (311)
.+.-+.++++..+ .+.+...+...|+.+.+..+.+...+-++.+. ... +-+...|-..|+..... -.+++...+
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l-~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL-FKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4566778888777 55556677778888888888888888888887 442 33566666666655442 345555555
Q ss_pred HHhcC-------CCC-------hHH-------HHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCCc
Q 037178 156 FDSLK-------TRN-------LFQ-------WNALVSGFTKNELYTDVLSIFVELSSDTEL-KPDN 200 (311)
Q Consensus 156 ~~~m~-------~~~-------~~~-------y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~ 200 (311)
|.+.. ... ..+ +.-+..-...+|..+.|+.+++-+.+ .++ .|..
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE-~n~~~P~~ 190 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE-FNFFRPES 190 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH-HHcCCccc
Confidence 55432 110 112 22233334567888899888888877 554 4543
No 458
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.62 E-value=2.7e+02 Score=22.28 Aligned_cols=122 Identities=10% Similarity=-0.024 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH-----HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC-----VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNA 240 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 240 (311)
.|..++.... .+.. +.....+.+.. . +...+|.. +...+...|++++|..-++..... +....+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~-~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQ-A---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHh-h---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 3555555543 2333 44444455544 1 22333332 234566777788877777665432 12222333
Q ss_pred -----HHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCCcchHHHHHHhhhhccCC
Q 037178 241 -----LIAMYGKCAFVEEMVKLFEVMPERNLVS--WNSIICGFSENGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 241 -----li~~~~~~g~~~~A~~~~~~m~~~~~~~--y~~li~~~~~~g~~~~a~~l~~~m~~~~~g 298 (311)
|-......|.+++|+..++...+++-.. ...--+.+...|+-++|..-|++. ...+
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kA--l~~~ 189 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKA--LESD 189 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHH--HHcc
Confidence 3345566788888888888777764433 344455677888888888887777 4443
No 459
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.35 E-value=4e+02 Score=24.19 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=8.8
Q ss_pred HHHHHHhcC--ChhHHHHHHHh
Q 037178 139 LITMYSLCG--FPLDSRRVFDS 158 (311)
Q Consensus 139 ll~~~~~~g--~~~~A~~l~~~ 158 (311)
.+...++.| +.+-+..+++.
T Consensus 144 ~L~~A~~~~~~~~~iv~~Ll~~ 165 (480)
T PHA03100 144 LLHLYLESNKIDLKILKLLIDK 165 (480)
T ss_pred HHHHHHHcCCChHHHHHHHHHC
Confidence 344444444 44444444443
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.29 E-value=2.3e+02 Score=27.35 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCC---hhhHHHHHHhcccCCChhH------HHHHHHHHHhhcCCCchhhHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADL---KEATGVLLQACGHEKDIEI------GKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~---~~~~~~ll~~~~~~~~~~~------a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
+|+.+|...| ++..+.++++.... .+.| ...||..|+...+.|.++. +.++++ ..-+.-|..||.
T Consensus 33 sl~eacv~n~-~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq----~a~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNG-DFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ----QARLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HhhcCCcchHHH
Confidence 7888999999 99999999888776 2222 4567888888888887643 333333 333556777776
Q ss_pred HHHHHH
Q 037178 138 RLITMY 143 (311)
Q Consensus 138 ~ll~~~ 143 (311)
.|+.+-
T Consensus 108 ll~~~s 113 (1117)
T COG5108 108 LLCQAS 113 (1117)
T ss_pred HHHHhh
Confidence 665543
No 461
>PRK09857 putative transposase; Provisional
Probab=31.05 E-value=3e+02 Score=23.50 Aligned_cols=64 Identities=3% Similarity=-0.078 Sum_probs=31.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc
Q 037178 169 ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD 234 (311)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 234 (311)
.++....+.|+.++..++++...+ . +.......-++..-+...|.-+++.++...|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~-~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAE-R-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHH-h-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344433444555555555555543 2 222333334455555555555555555666666665443
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.12 E-value=2.6e+02 Score=21.55 Aligned_cols=61 Identities=5% Similarity=-0.061 Sum_probs=42.9
Q ss_pred hhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 037178 190 LSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE 252 (311)
Q Consensus 190 m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 252 (311)
+++ .|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|.---++.+.+.|-+.
T Consensus 17 L~~-~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQ-RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHH-cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344 7776665433 555555556677789999999999987777666666677778777553
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.84 E-value=4e+02 Score=23.71 Aligned_cols=55 Identities=13% Similarity=-0.033 Sum_probs=38.2
Q ss_pred hcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHHHH--hcCChhHHHHHHHhcCCC
Q 037178 106 ACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITMYS--LCGFPLDSRRVFDSLKTR 162 (311)
Q Consensus 106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~~~--~~g~~~~A~~l~~~m~~~ 162 (311)
.+-..+++..|.++++.+. .. ++++.. .+..+..+|. ...++++|.+.|+.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~-~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELL-RR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHH-Hh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3447889999999999998 54 555444 4455555553 457788898888876654
No 464
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.03 E-value=2e+02 Score=20.02 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCC
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKTR 162 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~~ 162 (311)
.++.-|...|++++|...+.++.-|
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCC
Confidence 3566677777778877777777654
No 465
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.01 E-value=3.3e+02 Score=23.85 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=28.3
Q ss_pred hcCChhHHHHHHHhcCC-CChH----HHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 145 LCGFPLDSRRVFDSLKT-RNLF----QWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~-~~~~----~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
|.|++.+|.+.|+++.+ -... .-..+|.++....-+.++..++.+-.
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45888888888877543 2221 23456777766666666666655443
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.62 E-value=3.7e+02 Score=22.84 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhhcC-C---CchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-CChHHHHHHHHHHHhCCChhhHHHHH
Q 037178 113 IEIGKRVHELVSASTQ-F---SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RNLFQWNALVSGFTKNELYTDVLSIF 187 (311)
Q Consensus 113 ~~~a~~~~~~m~~~~g-~---~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~~g~~~~a~~~~ 187 (311)
.+.+.+.|+... ..+ - ..+......++....+.|..++-..+++.... ++......++.+.+...+.+...+++
T Consensus 146 ~~~a~~~~~~~~-~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWL-DGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHH-HTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 567788888877 431 1 34555556677777788887776777776664 46677888999998888888888888
Q ss_pred HHhhhcCC-CCCCcchHHHHHHHHhccCCh--hhHHHHHHH----HHHhCCCCcHHHHHHHHHH----HHhcCCHHHHHH
Q 037178 188 VELSSDTE-LKPDNFTFPCVIKACGGIADV--GFGSGVHGM----AAKMGLIGDVFVSNALIAM----YGKCAFVEEMVK 256 (311)
Q Consensus 188 ~~m~~~~~-~~p~~~t~~~li~~~~~~g~~--~~a~~~~~~----m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~ 256 (311)
+.... .+ +++.. ...++.++...+.. +.+.+++.. +.+. +..+......++.. ++.....++..+
T Consensus 225 ~~~l~-~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 225 DLLLS-NDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHC-TSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHcC-CcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 88876 43 44333 34444455433333 455544432 2222 22222233444443 334445566666
Q ss_pred HHhhCC
Q 037178 257 LFEVMP 262 (311)
Q Consensus 257 ~~~~m~ 262 (311)
.|+.-.
T Consensus 301 f~~~~~ 306 (324)
T PF11838_consen 301 FFEDKP 306 (324)
T ss_dssp HHHHHC
T ss_pred HHhhCc
Confidence 664433
No 467
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.58 E-value=5.8e+02 Score=25.15 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=62.4
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
++.--|+-++|..+.++|.. .. .|-. .-.-++..+|+..|+..-..+++.-....+ .-|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~-dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLR-DK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhc-CC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHheeeEecC
Confidence 34445666777777777765 22 2321 123345566777777766666665544443 3455555555556666666
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHH--HHHhCCCcchHHHHHHhh
Q 037178 251 VEEMVKLFEVMPE---RNLVSWNSIIC--GFSENGFSCESFDLLIKM 292 (311)
Q Consensus 251 ~~~A~~~~~~m~~---~~~~~y~~li~--~~~~~g~~~~a~~l~~~m 292 (311)
.+....+..-+.+ |.+.-=.++.- +|+..| ..+|..+++-|
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl 632 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPL 632 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhh
Confidence 6666666655554 22222222222 333333 35567777666
No 468
>COG5210 GTPase-activating protein [General function prediction only]
Probab=28.50 E-value=2.3e+02 Score=26.29 Aligned_cols=41 Identities=7% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
+++..+.+.|+.....++..++..+.+....+.|.++++.+
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~l 403 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCL 403 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555543
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.41 E-value=1.2e+02 Score=27.62 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
..-+...+ .++.|..++.+..+ .+-.+..|..--.++.+.+++..|..=...+. +.| -+.+.+|.+.|.
T Consensus 11 an~~l~~~-~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai-----e~d----P~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 11 ANEALKDK-VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI-----ELD----PTYIKAYVRRGT 80 (476)
T ss_pred Hhhhcccc-hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh-----hcC----chhhheeeeccH
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 149 PLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 149 ~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
++.+.+++.+|+..|+.... +.|+..-..-.+.-|-+...-++
T Consensus 81 ------------------------a~m~l~~~~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 81 ------------------------AVMALGEFKKALLDLEKVKK---LAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred ------------------------HHHhHHHHHHHHHHHHHhhh---cCcCcHHHHHHHHHHHHHHHHHh
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.26 E-value=4.3e+02 Score=23.53 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=31.4
Q ss_pred HhCCChhhHHHHHHHhhhcCCCCCCcc--hHHHHHHHHh--ccCChhhHHHHHHHHHHh
Q 037178 175 TKNELYTDVLSIFVELSSDTELKPDNF--TFPCVIKACG--GIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~p~~~--t~~~li~~~~--~~g~~~~a~~~~~~m~~~ 229 (311)
...+++..|.++|+++.. . +.++.. .|..+..+|. ...++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 466777777777777776 4 444443 3334444442 445666777777665544
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.24 E-value=2.6e+02 Score=20.93 Aligned_cols=22 Identities=9% Similarity=0.298 Sum_probs=10.2
Q ss_pred HHHHHHhcCChhHHHHHHHhcC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
+++.+.+.++.-.|..+++.+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~ 47 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELR 47 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHH
Confidence 4444444444444455544444
No 472
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.14 E-value=48 Score=24.51 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred hCCCcchHHHHHHhhhhccCCCCCCc
Q 037178 278 ENGFSCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 278 ~~g~~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
..|.-.+|..+|++| .+.|-.||.
T Consensus 107 ~ygsk~DaY~VF~kM--L~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKM--LERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHH--HhCCCCCcc
Confidence 346777899999999 899999986
No 473
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.10 E-value=3.9e+02 Score=23.04 Aligned_cols=137 Identities=8% Similarity=-0.079 Sum_probs=85.9
Q ss_pred CCCChhhHHHHHHhcc---c---------CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 93 NADLKEATGVLLQACG---H---------EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~---~---------~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
.+-|+.+|..++..-- . ..-.+.-..+++.+. +.+ +.+....-.+|..+.+..+.++..+-++++.
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL-~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERAL-KHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556666666654321 1 112456678889888 553 4677788889999999998888888888887
Q ss_pred C--C-ChHHHHHHHHHHHh---CCChhhHHHHHHHhhhc-----CCC----CCCcc-------hHHHHHHHHhccCChhh
Q 037178 161 T--R-NLFQWNALVSGFTK---NELYTDVLSIFVELSSD-----TEL----KPDNF-------TFPCVIKACGGIADVGF 218 (311)
Q Consensus 161 ~--~-~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~~-----~~~----~p~~~-------t~~~li~~~~~~g~~~~ 218 (311)
. | +...|-..|.-... .-.++++..+|.+-.+. .+. .+-.. .+.-+..-+...|-.+.
T Consensus 93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 4 3 55667666665544 23455666555543220 111 01111 22233333468899999
Q ss_pred HHHHHHHHHHhCC
Q 037178 219 GSGVHGMAAKMGL 231 (311)
Q Consensus 219 a~~~~~~m~~~g~ 231 (311)
|..+++-+.+.++
T Consensus 173 Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 173 AVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998875
No 474
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.06 E-value=54 Score=20.61 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=15.6
Q ss_pred CCChhhHHHHHHHhhhcCCCCCCc
Q 037178 177 NELYTDVLSIFVELSSDTELKPDN 200 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~p~~ 200 (311)
.-+++.|...|.+++....+.|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 347788888888887633444443
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.82 E-value=92 Score=20.09 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=12.9
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
|+.+.+.+++++..+.|..+.......+.-
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p 44 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMP 44 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 444444444444444444444433333333
No 476
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=27.79 E-value=1.9e+02 Score=19.31 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=20.2
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchH
Q 037178 247 KCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCES 285 (311)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a 285 (311)
..|+.+.|..+++.+. +..--|..++.++-..|..+-|
T Consensus 44 ~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 44 NSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred cCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHHHH
Confidence 4455555555555555 3444455555555555544433
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.45 E-value=80 Score=22.51 Aligned_cols=48 Identities=8% Similarity=-0.043 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178 168 NALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV 216 (311)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 216 (311)
..++..+...+.+-.|.++++.+.+ .+...+..|.---++.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRK-KGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHH-TTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhh-ccCCcCHHHHHHHHHHHHHCCeE
Confidence 3456666666667777888887776 66666665554455555555543
No 478
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.27 E-value=3.4e+02 Score=22.07 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=29.8
Q ss_pred hcCCCchhhHHHHHHHHHHhc--CChhHHHHHHHhcCCCChH-HH-HHHHHHHHhCCChhhHHHHHHHh
Q 037178 126 STQFSNDFIINTRLITMYSLC--GFPLDSRRVFDSLKTRNLF-QW-NALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 126 ~~g~~~~~~~~~~ll~~~~~~--g~~~~A~~l~~~m~~~~~~-~y-~~li~~~~~~g~~~~a~~~~~~m 190 (311)
..++++. |..++.+|.-. +++++|.+.+. .|.+. ++ .-++.++...|+.+.|..+++.+
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhc
Confidence 3454443 33355555543 45555555553 23221 11 23666666667777776666554
No 479
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.02 E-value=2.1e+02 Score=19.42 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=25.8
Q ss_pred hcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 037178 145 LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNEL 179 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~ 179 (311)
..-..+++.++++.++.++..+|..+..++-..|.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 44556778888888888888888888888766554
No 480
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=4.1e+02 Score=22.80 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=54.5
Q ss_pred hcccCCChhHHHHHHHHHHhhcCCCchhh-------HHHHHHHHHHhcCChhHHHHHHH-------hcCCC-ChHHHHHH
Q 037178 106 ACGHEKDIEIGKRVHELVSASTQFSNDFI-------INTRLITMYSLCGFPLDSRRVFD-------SLKTR-NLFQWNAL 170 (311)
Q Consensus 106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-------~~~~ll~~~~~~g~~~~A~~l~~-------~m~~~-~~~~y~~l 170 (311)
-..+.+++++|...+..+. ..|+..|.. +..-+...|...|+...-.++.. +..+| .+....++
T Consensus 12 ~~v~~~~~~~ai~~yk~iL-~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRIL-GKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HhhhhhhHHHHHHHHHHHh-cCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 3445566666666666666 555554433 23345555666665444333222 22222 22334444
Q ss_pred HHHHHhC-CChhhHHHHHHHhhhcCCCCCCc-----chHHHHHHHHhccCChhhHHHHHHH
Q 037178 171 VSGFTKN-ELYTDVLSIFVELSSDTELKPDN-----FTFPCVIKACGGIADVGFGSGVHGM 225 (311)
Q Consensus 171 i~~~~~~-g~~~~a~~~~~~m~~~~~~~p~~-----~t~~~li~~~~~~g~~~~a~~~~~~ 225 (311)
|.-+-.. ..++..+.+.....+ ...+-+. .-=.-++..+.+.|.+.+|..+.+.
T Consensus 91 iekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444332 234444444333322 1111111 1122456677777777777765443
No 481
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=26.30 E-value=40 Score=20.53 Aligned_cols=34 Identities=9% Similarity=0.304 Sum_probs=23.9
Q ss_pred CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
|-.++.+.+|+.|.. +...|....|+-.++-|..
T Consensus 6 gy~~~lI~vFK~~pS-r~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPS-RNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcc-cccCccceeeeeeHHHHHH
Confidence 556777888888887 7777777777666655543
No 482
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=25.83 E-value=1.8e+02 Score=19.82 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=6.4
Q ss_pred chHHHHHHHHhccCC
Q 037178 201 FTFPCVIKACGGIAD 215 (311)
Q Consensus 201 ~t~~~li~~~~~~g~ 215 (311)
.|...|+.++...+.
T Consensus 66 Atv~~Lv~AL~~c~l 80 (90)
T cd08780 66 ATLQRLVQALEENGL 80 (90)
T ss_pred chHHHHHHHHHHccc
Confidence 344444444444433
No 483
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.60 E-value=3.7e+02 Score=24.91 Aligned_cols=45 Identities=13% Similarity=-0.068 Sum_probs=24.2
Q ss_pred hHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 182 DVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
+..+.+++.....|+..+......++. ...|+...|..+++....
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 334444444332566555555554444 334677777777766543
No 484
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.50 E-value=2.7e+02 Score=20.31 Aligned_cols=43 Identities=2% Similarity=0.017 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178 217 GFGSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 259 (311)
++..++|..|.+.|+--. ...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345667777777766443 4455566666667777777777765
No 485
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.47 E-value=4e+02 Score=22.23 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG 211 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~ 211 (311)
|......+...|.+.|++.+|+.-|=.-..++...+..++.-+...|...++ |...-.+++. |.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------------DLFIARAVLQ-YL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------------HHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------------hHHHHHHHHH-HH
Confidence 5667777888888888888888777555444444443333333333333322 2222223333 34
Q ss_pred ccCChhhHHHHHHHHHHh
Q 037178 212 GIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~ 229 (311)
-.|++..|..+++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 445677777766655544
No 486
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.22 E-value=5.2e+02 Score=27.08 Aligned_cols=24 Identities=4% Similarity=-0.045 Sum_probs=13.1
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHH
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~ 186 (311)
....|..+...+.+.|+.++|...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHh
Confidence 334455555555555666555554
No 487
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=25.22 E-value=5.4e+02 Score=24.18 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=40.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
++.-|-.++.-|+..+ ++++|+++.+...+ ...|.++.....+..+..-++..|..+.
T Consensus 572 sV~py~~iL~e~~sss-KWeqavRLCrfv~e----qTMWAtlAa~Av~~~~m~~~EiAYaA~~ 629 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSS-KWEQAVRLCRFVQE----QTMWATLAAVAVRKHQMQISEIAYAAAL 629 (737)
T ss_pred eccccHHHHHHHhccc-hHHHHHHHHHhccc----hHHHHHHHHHHHhhccccHHHHHHHHhh
Confidence 4455888889999999 99999999877664 5556666666566666655555555444
No 488
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.17 E-value=2.1e+02 Score=18.95 Aligned_cols=58 Identities=12% Similarity=-0.076 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 037178 217 GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSE 278 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~ 278 (311)
..+..+++.+.+.|+ .+..-|..+-. +.-.-++|.++++....++..++..+..++..
T Consensus 15 ~~v~~ilD~L~~~~V-it~e~~~~I~a---~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~e 72 (82)
T cd08330 15 TNVDPILDKLHGKKV-ITQEQYSEVRA---EKTNQEKMRKLFSFVRSWGASCKDIFYQILRE 72 (82)
T ss_pred hhHHHHHHHHHHCCC-CCHHHHHHHHc---CCCcHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345667777777773 45555555443 55677888888888888888888887777743
No 489
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.13 E-value=2.3e+02 Score=19.24 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 118 RVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 118 ~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
++|+-.. ..|+..|..+|..+++.+--+=-.+...++++.|.
T Consensus 29 EL~ELa~-~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQ-LAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHH-HhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566665 66777777777766666555545555555555553
No 490
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.06 E-value=53 Score=20.80 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=14.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
...++.++..+++.. -.+.++..+.++..
T Consensus 8 ~~l~~Ql~el~Aed~-AieDtiy~L~~al~ 36 (65)
T PF09454_consen 8 DPLSNQLYELVAEDH-AIEDTIYYLDRALQ 36 (65)
T ss_dssp SHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334445555555554 45555555554444
No 491
>PRK02287 hypothetical protein; Provisional
Probab=24.60 E-value=3.4e+02 Score=21.10 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=39.0
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHhcCCC--ChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 131 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTR--NLFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
-...+.-++..++.-.|..++|.++++...=. -...-..+++.|.+..+.++..++-++..
T Consensus 105 ~kLs~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 105 FKLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34455666777777778778888777766522 22233457777777777777776655543
No 492
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.30 E-value=2.3e+02 Score=25.58 Aligned_cols=86 Identities=10% Similarity=-0.041 Sum_probs=51.4
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--CCCchh-hHHHHHHHHHHhc
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--QFSNDF-IINTRLITMYSLC 146 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g~~~~~-~~~~~ll~~~~~~ 146 (311)
.++...+ +++..-..|.+..- ....-....-+++.+.-.||.+...+..+.|. +. |..|-. +||- +.-+|.-.
T Consensus 209 ~~~~s~~-dp~~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~p-k~iy~t~p~c~VTY~-VGFayLmm 285 (525)
T KOG3677|consen 209 TASVSNK-DPALVALIFGASQPYANLGYFSLLGLLRMHILLGDHQATSQILDIMP-KEIYGTEPMCRVTYQ-VGFAYLMM 285 (525)
T ss_pred HHHhcCC-ChhhhhhhhccccHHHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCc-hhhcCcccceeEeee-hhHHHHHH
Confidence 3444444 55544444433322 22334455667788888888777778888776 32 334432 2333 56677777
Q ss_pred CChhHHHHHHHhc
Q 037178 147 GFPLDSRRVFDSL 159 (311)
Q Consensus 147 g~~~~A~~l~~~m 159 (311)
|++.+|.++|-..
T Consensus 286 rryadai~~F~ni 298 (525)
T KOG3677|consen 286 RRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888664
No 493
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=23.97 E-value=4.1e+02 Score=21.83 Aligned_cols=43 Identities=5% Similarity=0.036 Sum_probs=22.1
Q ss_pred hHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 150 LDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 150 ~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
++|...++.-.. .+..+-..+.-++...|+...+.++++.+..
T Consensus 116 ~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 116 NKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 445555544422 2433333333445556666777777666643
No 494
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.71 E-value=5e+02 Score=25.46 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=26.9
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
++....+.+..+..|+..+......+++.. .|++..+..+++.+..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 344444444433366666666666666544 4777777777766554
No 495
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=23.67 E-value=3.2e+02 Score=25.37 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=72.0
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhcCCC---CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178 168 NALVSGFTKNELYTDVLSIFVELSSDTEL---KPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM 244 (311)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 244 (311)
.+++.+.......++-..+|..... ... .-|..-+...++-+...|.+.+...+-..|++.=-. -+..++
T Consensus 212 GaivAsl~~v~~~eEl~~Ll~~~~~-~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~~~~~~~------lTFqEA 284 (543)
T KOG2214|consen 212 GAIVASLVGVRSNEELKQLLTNFLH-SLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVMKKRLGN------LTFQEA 284 (543)
T ss_pred hHHHHHHHhhcchHHHHHHhccchH-hhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------hhHHHH
Confidence 4455555555556666666655443 222 223334556666666666666665555555443111 134455
Q ss_pred HHhcCCH----------HHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCcee
Q 037178 245 YGKCAFV----------EEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVIT 305 (311)
Q Consensus 245 ~~~~g~~----------~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t 305 (311)
|-+.|++ -+.=++++-.-.||+..|.++..+|+--|=++ ...++.+- ....+.|-..+
T Consensus 285 Y~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aScs~pgif~-~~~Ll~Kd--~t~ei~p~~~~ 352 (543)
T KOG2214|consen 285 YDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASCSVPGIFE-STPLLAKD--LTNEIEPFIVT 352 (543)
T ss_pred HHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhcccccccC-ccHHHHhh--ccCcEeeccCC
Confidence 5555542 23334555555699999999999988887554 45566655 45556665444
No 496
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=23.61 E-value=1.2e+02 Score=20.18 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=24.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
...+++.+.. ++++++...+.++...|+.++ ...+.+.+...+.
T Consensus 8 i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 8 IEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 3444444433 478888888887777776543 3444555555544
No 497
>PRK07914 hypothetical protein; Reviewed
Probab=23.45 E-value=4.7e+02 Score=22.47 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=20.6
Q ss_pred HHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHH
Q 037178 188 VELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMA 226 (311)
Q Consensus 188 ~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 226 (311)
++.++ .|+..+......|+..+. ++......-++.+
T Consensus 139 ~~a~~-~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL 174 (320)
T PRK07914 139 KEFRS-LRVKVDDDTVTALLDAVG--SDLRELASACSQL 174 (320)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHH
Confidence 33444 777777777777776664 3444444444444
No 498
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=23.38 E-value=6.6e+02 Score=24.02 Aligned_cols=163 Identities=10% Similarity=0.015 Sum_probs=93.8
Q ss_pred hhHHHHHHhcc-cCCChhHHHHHHHHHHhhcCCCch-----hhHHHHHHHHHHhcCChhHHHHHHHhcCCC----Ch---
Q 037178 98 EATGVLLQACG-HEKDIEIGKRVHELVSASTQFSND-----FIINTRLITMYSLCGFPLDSRRVFDSLKTR----NL--- 164 (311)
Q Consensus 98 ~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~g~~~~-----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~--- 164 (311)
.++-.+.+.+. ...++++|+..+.+.. ...-.++ -.....++..|.+.+... |....++..+. ..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 34445555554 5678889988888765 3322222 123345667777777666 77777764421 11
Q ss_pred -HHHHHH-HHHHHhCCChhhHHHHHHHhhhcCC--CCCCcchHHHHHHHHh--ccCChhhHHHHHHHHHHhCC-------
Q 037178 165 -FQWNAL-VSGFTKNELYTDVLSIFVELSSDTE--LKPDNFTFPCVIKACG--GIADVGFGSGVHGMAAKMGL------- 231 (311)
Q Consensus 165 -~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~~~--~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~m~~~g~------- 231 (311)
..+.-+ +.-+...+++..|.+.++.+..... ..|-..++..++.+.. +.+..+++.+.++++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 122223 2233334799999999988866332 3344455656666654 44556667777766643322
Q ss_pred --CCcHHHHHHHHHHHH--hcCCHHHHHHHHhhCC
Q 037178 232 --IGDVFVSNALIAMYG--KCAFVEEMVKLFEVMP 262 (311)
Q Consensus 232 --~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 262 (311)
.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677777777654 5677666666555443
No 499
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.32 E-value=3.8e+02 Score=21.82 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=54.7
Q ss_pred hhHHHHHHHhcCCC-----------ChHHHHHHHHHHHhCCC---------hhhHHHHHHHhhhcCCCCC-CcchHHHHH
Q 037178 149 PLDSRRVFDSLKTR-----------NLFQWNALVSGFTKNEL---------YTDVLSIFVELSSDTELKP-DNFTFPCVI 207 (311)
Q Consensus 149 ~~~A~~l~~~m~~~-----------~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~~p-~~~t~~~li 207 (311)
.+.|..++.+|.-. ...-|-.+..+|.+.|- .+.-.++++...+ .|++- =.+.|+.+|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ld-aGv~kviPHIYssiI 215 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALD-AGVEKVIPHVYSSII 215 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHH-cCCCeeccccceecc
Confidence 67788888888742 44568899999999873 3344455555555 66643 346788888
Q ss_pred HHHhccCChhhHHHHHHHHH
Q 037178 208 KACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~ 227 (311)
+--...-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 77666678888888887664
No 500
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.30 E-value=5.4e+02 Score=23.00 Aligned_cols=54 Identities=11% Similarity=-0.142 Sum_probs=34.8
Q ss_pred HHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh------ccCChhhHHHHHHH
Q 037178 171 VSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG------GIADVGFGSGVHGM 225 (311)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~------~~g~~~~a~~~~~~ 225 (311)
+..+.+.+++..|.++|+++.. ....|....+-..+..+| ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~-r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLR-RLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHh-cccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3355677888888888888887 666565554433333333 34566777777764
Done!